Query 002086
Match_columns 969
No_of_seqs 985 out of 5072
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 2.4E-39 8.2E-44 387.9 52.7 477 287-880 35-533 (577)
2 1nr0_A Actin interacting prote 100.0 9.9E-40 3.4E-44 396.9 49.5 438 295-880 26-561 (611)
3 1nr0_A Actin interacting prote 100.0 9.7E-38 3.3E-42 379.4 48.6 376 289-761 38-568 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 5.9E-36 2E-40 358.4 52.0 478 287-880 76-574 (577)
5 2ynn_A Coatomer subunit beta'; 100.0 4.9E-35 1.7E-39 323.4 41.4 252 441-761 3-260 (304)
6 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-34 5.2E-39 378.4 47.9 555 293-958 621-1246(1249)
7 1pgu_A Actin interacting prote 100.0 1E-34 3.5E-39 349.0 42.6 452 295-866 26-541 (615)
8 1vyh_C Platelet-activating fac 100.0 4.3E-35 1.5E-39 338.3 37.1 247 442-759 141-410 (410)
9 1got_B GT-beta; complex (GTP-b 100.0 1E-34 3.5E-39 326.0 39.0 289 441-757 45-340 (340)
10 1vyh_C Platelet-activating fac 100.0 8E-35 2.7E-39 336.1 38.8 248 444-761 101-370 (410)
11 4gqb_B Methylosome protein 50; 100.0 1.4E-34 4.9E-39 326.6 39.6 247 449-762 80-333 (344)
12 3ow8_A WD repeat-containing pr 100.0 2.8E-34 9.5E-39 320.6 39.7 251 442-761 23-280 (321)
13 3iz6_a 40S ribosomal protein R 100.0 1.6E-34 5.4E-39 329.9 36.3 304 436-761 51-376 (380)
14 3ow8_A WD repeat-containing pr 100.0 4.4E-34 1.5E-38 319.0 38.2 243 446-759 75-320 (321)
15 2pbi_B Guanine nucleotide-bind 100.0 1.2E-33 4E-38 319.8 41.7 290 441-757 54-354 (354)
16 3frx_A Guanine nucleotide-bind 100.0 9.4E-34 3.2E-38 315.5 38.4 303 440-845 6-317 (319)
17 3frx_A Guanine nucleotide-bind 100.0 3E-33 1E-37 311.4 39.0 292 331-760 10-317 (319)
18 4g56_B MGC81050 protein; prote 100.0 1E-33 3.4E-38 320.9 35.5 310 315-761 28-344 (357)
19 3sfz_A APAF-1, apoptotic pepti 100.0 5.6E-34 1.9E-38 373.0 38.4 530 287-875 634-1237(1249)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-32 3.6E-37 310.5 40.6 257 440-762 4-285 (345)
21 2ynn_A Coatomer subunit beta'; 100.0 5E-33 1.7E-37 307.3 37.2 253 437-760 41-302 (304)
22 2xzm_R RACK1; ribosome, transl 100.0 6.6E-33 2.3E-37 311.5 36.3 295 330-760 13-340 (343)
23 2xzm_R RACK1; ribosome, transl 100.0 9.5E-33 3.2E-37 310.2 36.8 308 441-844 11-339 (343)
24 4g56_B MGC81050 protein; prote 100.0 2.6E-33 9E-38 317.4 31.4 251 447-761 38-302 (357)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.7E-32 1.3E-36 306.1 38.6 305 330-763 7-338 (345)
26 4gqb_B Methylosome protein 50; 100.0 8.5E-33 2.9E-37 312.1 33.4 256 448-761 27-290 (344)
27 1erj_A Transcriptional repress 100.0 4.9E-32 1.7E-36 310.7 39.4 311 449-843 62-387 (393)
28 1pgu_A Actin interacting prote 100.0 9.4E-32 3.2E-36 323.2 43.2 406 289-761 38-573 (615)
29 2pm7_B Protein transport prote 100.0 3.9E-32 1.3E-36 299.1 35.4 253 444-760 2-285 (297)
30 1erj_A Transcriptional repress 100.0 8.7E-32 3E-36 308.6 39.5 246 453-760 125-389 (393)
31 2hes_X YDR267CP; beta-propelle 100.0 9.8E-32 3.3E-36 300.7 37.1 297 439-760 2-328 (330)
32 4ery_A WD repeat-containing pr 100.0 2E-31 6.9E-36 294.1 39.0 291 440-759 12-311 (312)
33 1gxr_A ESG1, transducin-like e 100.0 1.9E-30 6.5E-35 286.6 42.7 324 337-758 8-335 (337)
34 3mkq_A Coatomer beta'-subunit; 100.0 4.3E-31 1.5E-35 329.5 42.0 252 441-762 3-261 (814)
35 4aow_A Guanine nucleotide-bind 100.0 5E-31 1.7E-35 292.3 37.5 293 438-761 25-338 (340)
36 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-31 1.3E-35 335.2 38.6 397 288-761 37-606 (902)
37 1r5m_A SIR4-interacting protei 100.0 2.4E-31 8.1E-36 303.3 33.4 304 436-846 30-362 (425)
38 1r5m_A SIR4-interacting protei 100.0 3.4E-31 1.2E-35 302.0 34.4 357 316-759 28-424 (425)
39 1got_B GT-beta; complex (GTP-b 100.0 8.3E-31 2.8E-35 294.2 36.0 288 331-715 48-340 (340)
40 2pbi_B Guanine nucleotide-bind 100.0 1E-30 3.6E-35 295.6 35.8 290 332-715 58-354 (354)
41 3zwl_B Eukaryotic translation 100.0 6.2E-30 2.1E-34 285.8 41.4 292 440-846 21-347 (369)
42 3jrp_A Fusion protein of prote 100.0 1.6E-30 5.6E-35 292.0 34.9 255 442-760 2-287 (379)
43 3bg1_A Protein SEC13 homolog; 100.0 1.7E-31 5.8E-36 296.9 26.3 248 446-760 8-293 (316)
44 3dm0_A Maltose-binding peripla 100.0 3.4E-30 1.2E-34 317.3 39.0 242 445-759 424-692 (694)
45 3f3f_A Nucleoporin SEH1; struc 100.0 4.2E-30 1.4E-34 283.3 35.0 254 445-762 5-339 (351)
46 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-30 9.6E-35 327.2 37.8 342 335-762 14-521 (902)
47 4ery_A WD repeat-containing pr 100.0 2.1E-29 7.3E-34 277.9 39.4 272 546-867 15-290 (312)
48 1gxr_A ESG1, transducin-like e 100.0 2.7E-29 9.4E-34 277.2 40.3 248 445-761 45-297 (337)
49 4e54_B DNA damage-binding prot 100.0 8.4E-31 2.9E-35 304.4 29.2 302 437-846 105-431 (435)
50 3dm0_A Maltose-binding peripla 100.0 8.1E-30 2.8E-34 314.0 38.9 311 441-843 372-691 (694)
51 3dwl_C Actin-related protein 2 100.0 4.6E-31 1.6E-35 298.4 25.5 252 446-760 6-281 (377)
52 3k26_A Polycomb protein EED; W 100.0 2.4E-30 8.1E-35 289.2 29.9 258 437-759 50-365 (366)
53 3odt_A Protein DOA1; ubiquitin 100.0 2.2E-29 7.5E-34 275.3 36.8 289 439-764 6-300 (313)
54 3zwl_B Eukaryotic translation 100.0 4.7E-29 1.6E-33 278.6 39.0 251 438-761 61-347 (369)
55 3ei3_B DNA damage-binding prot 100.0 7.4E-30 2.5E-34 289.7 32.4 299 436-760 58-382 (383)
56 3gre_A Serine/threonine-protei 100.0 5.5E-30 1.9E-34 296.1 31.6 258 440-762 51-361 (437)
57 2pm9_A Protein WEB1, protein t 100.0 5.9E-31 2E-35 300.6 22.6 337 337-760 11-414 (416)
58 2pm9_A Protein WEB1, protein t 100.0 7.4E-30 2.5E-34 291.5 31.6 324 449-845 65-414 (416)
59 1sq9_A Antiviral protein SKI8; 100.0 9.9E-30 3.4E-34 288.9 31.7 295 442-761 7-396 (397)
60 3iz6_a 40S ribosomal protein R 100.0 2.4E-30 8.2E-35 295.2 25.4 303 332-718 60-375 (380)
61 3vl1_A 26S proteasome regulato 100.0 1.1E-29 3.8E-34 291.2 29.8 253 437-761 84-366 (420)
62 3v7d_B Cell division control p 100.0 7.7E-29 2.6E-33 288.8 37.2 302 443-865 113-442 (464)
63 3vl1_A 26S proteasome regulato 100.0 9.5E-29 3.2E-33 283.4 37.0 321 339-760 57-419 (420)
64 3i2n_A WD repeat-containing pr 100.0 2.4E-29 8.4E-34 280.3 30.7 294 445-761 12-354 (357)
65 1k8k_C P40, ARP2/3 complex 41 100.0 4.9E-29 1.7E-33 279.9 33.3 252 447-760 4-274 (372)
66 3mkq_A Coatomer beta'-subunit; 100.0 1E-28 3.5E-33 308.1 39.0 428 331-874 6-486 (814)
67 3k26_A Polycomb protein EED; W 100.0 2.2E-29 7.4E-34 281.4 28.6 302 446-843 13-364 (366)
68 2hes_X YDR267CP; beta-propelle 100.0 7.4E-29 2.5E-33 277.3 32.6 301 331-717 7-327 (330)
69 4aez_A CDC20, WD repeat-contai 100.0 1.6E-28 5.4E-33 281.7 35.2 257 435-764 117-384 (401)
70 4a11_B DNA excision repair pro 100.0 2.1E-28 7.1E-33 277.7 35.5 281 435-764 27-369 (408)
71 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-29 5.4E-34 301.1 27.2 203 549-760 202-428 (524)
72 3dw8_B Serine/threonine-protei 100.0 1.3E-28 4.4E-33 284.4 33.9 255 449-761 26-374 (447)
73 1k8k_C P40, ARP2/3 complex 41 100.0 3E-28 1E-32 273.5 35.5 255 437-761 36-362 (372)
74 3mmy_A MRNA export factor; mRN 100.0 3.7E-28 1.3E-32 271.2 35.9 256 437-761 25-305 (368)
75 4h5i_A Guanine nucleotide-exch 100.0 1.1E-28 3.6E-33 280.5 31.6 203 552-761 131-344 (365)
76 3dwl_C Actin-related protein 2 100.0 1.3E-29 4.6E-34 286.4 23.6 252 442-758 46-377 (377)
77 1yfq_A Cell cycle arrest prote 100.0 1.3E-28 4.6E-33 273.3 31.2 249 444-761 4-283 (342)
78 4gga_A P55CDC, cell division c 100.0 4.2E-28 1.4E-32 280.1 36.1 255 435-762 129-397 (420)
79 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9E-28 3.1E-32 278.9 38.5 238 442-761 109-349 (445)
80 3gre_A Serine/threonine-protei 100.0 5.1E-29 1.7E-33 288.0 27.1 304 332-757 56-437 (437)
81 3v7d_B Cell division control p 100.0 5.2E-27 1.8E-31 273.3 40.4 251 435-763 146-424 (464)
82 4ggc_A P55CDC, cell division c 100.0 3E-27 1E-31 259.3 35.9 253 435-760 49-315 (318)
83 3ei3_B DNA damage-binding prot 100.0 1.7E-27 6E-32 270.2 34.8 271 544-851 63-345 (383)
84 3jro_A Fusion protein of prote 100.0 1.8E-28 6.2E-33 305.2 28.5 254 444-761 2-286 (753)
85 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.8E-27 1.3E-31 273.7 37.9 320 331-760 111-442 (445)
86 4aow_A Guanine nucleotide-bind 100.0 4.9E-27 1.7E-31 260.2 34.9 300 332-718 32-337 (340)
87 4aez_A CDC20, WD repeat-contai 100.0 4.1E-27 1.4E-31 270.0 34.3 294 444-850 84-385 (401)
88 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-28 7.8E-33 291.1 23.9 257 444-760 200-517 (524)
89 2aq5_A Coronin-1A; WD40 repeat 100.0 5.5E-28 1.9E-32 276.9 26.1 255 443-760 73-342 (402)
90 1yfq_A Cell cycle arrest prote 100.0 2.2E-27 7.6E-32 263.5 30.0 244 447-758 52-322 (342)
91 2xyi_A Probable histone-bindin 100.0 3.2E-27 1.1E-31 274.0 31.5 258 445-760 122-410 (430)
92 4e54_B DNA damage-binding prot 100.0 1.3E-27 4.5E-32 277.4 27.3 297 548-880 113-424 (435)
93 4gga_A P55CDC, cell division c 100.0 5E-26 1.7E-30 262.7 39.9 283 453-847 107-397 (420)
94 1sq9_A Antiviral protein SKI8; 100.0 1.3E-26 4.4E-31 263.2 30.8 273 547-853 9-330 (397)
95 2pm7_B Protein transport prote 100.0 2.2E-26 7.6E-31 253.1 31.0 251 549-843 4-283 (297)
96 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-26 8.2E-31 266.5 32.6 246 435-762 157-416 (435)
97 1p22_A F-BOX/WD-repeat protein 100.0 9.2E-26 3.1E-30 261.6 36.7 234 446-761 128-366 (435)
98 4ggc_A P55CDC, cell division c 100.0 2.7E-25 9.2E-30 243.7 38.4 279 454-844 28-314 (318)
99 4a11_B DNA excision repair pro 99.9 6.3E-26 2.1E-30 257.3 32.6 291 544-880 33-359 (408)
100 3dw8_B Serine/threonine-protei 99.9 5.2E-26 1.8E-30 262.5 31.8 285 440-759 70-445 (447)
101 3mmy_A MRNA export factor; mRN 99.9 5.4E-26 1.8E-30 253.7 30.8 250 445-760 80-346 (368)
102 3vu4_A KMHSV2; beta-propeller 99.9 6.8E-26 2.3E-30 256.2 29.9 252 437-761 5-272 (355)
103 4h5i_A Guanine nucleotide-exch 99.9 1.6E-25 5.3E-30 254.4 30.4 198 448-717 130-342 (365)
104 3i2n_A WD repeat-containing pr 99.9 8.4E-26 2.9E-30 251.7 27.0 297 333-719 13-354 (357)
105 4gq1_A NUP37; propeller, trans 99.9 1.9E-26 6.6E-31 264.4 22.2 256 447-759 85-388 (393)
106 3odt_A Protein DOA1; ubiquitin 99.9 5.2E-25 1.8E-29 240.5 31.6 282 331-719 11-297 (313)
107 2aq5_A Coronin-1A; WD40 repeat 99.9 4E-25 1.4E-29 253.0 30.7 243 453-761 36-300 (402)
108 1l0q_A Surface layer protein; 99.9 5.7E-24 2E-28 241.4 39.9 253 435-762 16-277 (391)
109 3jrp_A Fusion protein of prote 99.9 3.4E-25 1.1E-29 248.6 29.4 254 546-844 3-286 (379)
110 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.9E-24 6.6E-29 251.7 34.5 290 451-758 4-337 (450)
111 3bg1_A Protein SEC13 homolog; 99.9 9.7E-26 3.3E-30 250.4 21.9 207 549-760 8-247 (316)
112 3f3f_A Nucleoporin SEH1; struc 99.9 1.8E-24 6.3E-29 238.1 30.1 293 549-847 6-339 (351)
113 2j04_A TAU60, YPL007P, hypothe 99.9 7.8E-25 2.7E-29 256.8 27.4 264 449-759 13-296 (588)
114 3lrv_A PRE-mRNA-splicing facto 99.9 2.3E-25 7.7E-30 249.9 22.1 230 457-761 42-293 (343)
115 2j04_A TAU60, YPL007P, hypothe 99.9 2.2E-24 7.6E-29 252.9 29.1 288 338-749 15-350 (588)
116 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.3E-24 2.2E-28 247.4 32.6 251 447-760 98-391 (450)
117 3bws_A Protein LP49; two-domai 99.9 1.8E-23 6.3E-28 240.6 33.9 242 446-760 164-432 (433)
118 3bws_A Protein LP49; two-domai 99.9 8.7E-24 3E-28 243.3 30.5 252 442-761 114-391 (433)
119 3lrv_A PRE-mRNA-splicing facto 99.9 7.2E-24 2.5E-28 237.6 26.0 256 436-760 63-333 (343)
120 3vu4_A KMHSV2; beta-propeller 99.9 2.7E-23 9.2E-28 234.8 28.7 247 437-762 46-338 (355)
121 2w18_A PALB2, fancn, partner a 99.9 1.3E-22 4.6E-27 224.6 31.7 296 438-758 22-355 (356)
122 1l0q_A Surface layer protein; 99.9 3E-22 1E-26 227.2 35.4 275 464-855 3-285 (391)
123 3jro_A Fusion protein of prote 99.9 2.8E-23 9.6E-28 258.4 29.3 253 548-845 3-285 (753)
124 2xyi_A Probable histone-bindin 99.9 1.8E-22 6.3E-27 233.8 28.4 208 548-761 122-354 (430)
125 2w18_A PALB2, fancn, partner a 99.9 1.7E-21 5.9E-26 215.7 32.0 285 289-716 41-355 (356)
126 4gq1_A NUP37; propeller, trans 99.9 4.4E-23 1.5E-27 236.4 16.2 210 551-761 86-349 (393)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.6E-21 1.9E-25 220.8 28.9 251 435-760 97-387 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-21 6.8E-26 224.6 23.9 247 565-869 143-410 (415)
129 1ri6_A Putative isomerase YBHE 99.8 6.6E-19 2.3E-23 194.6 30.9 250 449-759 35-307 (343)
130 1nir_A Nitrite reductase; hemo 99.8 1.4E-18 4.8E-23 207.9 31.4 260 435-762 163-460 (543)
131 1k32_A Tricorn protease; prote 99.8 4.4E-18 1.5E-22 219.1 38.3 283 450-762 294-639 (1045)
132 1k32_A Tricorn protease; prote 99.8 3.1E-18 1.1E-22 220.6 33.6 281 444-760 196-502 (1045)
133 1nir_A Nitrite reductase; hemo 99.8 1.6E-18 5.6E-23 207.2 28.5 262 439-763 210-517 (543)
134 3u4y_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 188.3 29.1 254 435-760 24-304 (331)
135 2ojh_A Uncharacterized protein 99.8 2.8E-18 9.7E-23 184.3 25.9 241 437-751 28-293 (297)
136 2ecf_A Dipeptidyl peptidase IV 99.8 1E-18 3.5E-23 215.9 23.8 260 451-759 36-366 (741)
137 3hfq_A Uncharacterized protein 99.8 2.7E-17 9.3E-22 183.6 31.9 252 447-759 35-316 (347)
138 1ri6_A Putative isomerase YBHE 99.8 1E-17 3.6E-22 184.9 27.4 203 552-760 35-262 (343)
139 3u4y_A Uncharacterized protein 99.8 5E-17 1.7E-21 179.6 31.8 238 457-761 3-253 (331)
140 1pby_B Quinohemoprotein amine 99.8 7.3E-18 2.5E-22 185.7 23.4 256 436-761 16-311 (337)
141 3vgz_A Uncharacterized protein 99.8 7.3E-17 2.5E-21 179.4 31.1 243 450-761 39-304 (353)
142 2ojh_A Uncharacterized protein 99.8 9.2E-17 3.2E-21 172.5 26.1 199 550-761 37-259 (297)
143 2ecf_A Dipeptidyl peptidase IV 99.8 2.8E-17 9.5E-22 203.1 25.1 257 444-760 144-459 (741)
144 1pby_B Quinohemoprotein amine 99.8 5.7E-17 2E-21 178.5 24.3 273 464-854 2-319 (337)
145 3vgz_A Uncharacterized protein 99.7 7.5E-16 2.6E-20 171.2 32.5 250 437-751 75-335 (353)
146 3scy_A Hypothetical bacterial 99.7 2E-15 6.9E-20 169.5 36.1 245 450-759 48-336 (361)
147 1xfd_A DIP, dipeptidyl aminope 99.7 7.1E-17 2.4E-21 198.7 25.5 258 435-760 41-393 (723)
148 3o4h_A Acylamino-acid-releasin 99.7 4.5E-17 1.5E-21 195.8 22.8 232 450-758 20-274 (582)
149 2z3z_A Dipeptidyl aminopeptida 99.7 4.8E-17 1.6E-21 199.9 22.9 197 553-759 80-341 (706)
150 2oit_A Nucleoporin 214KDA; NH2 99.7 7.9E-17 2.7E-21 187.3 23.0 260 450-759 35-332 (434)
151 1jmx_B Amine dehydrogenase; ox 99.7 1.3E-16 4.4E-21 176.9 23.6 238 456-761 4-326 (349)
152 2oit_A Nucleoporin 214KDA; NH2 99.7 5.4E-16 1.8E-20 180.2 27.7 169 449-668 90-279 (434)
153 1xfd_A DIP, dipeptidyl aminope 99.7 5.7E-17 2E-21 199.5 20.5 238 453-757 18-341 (723)
154 2z3z_A Dipeptidyl aminopeptida 99.7 3.8E-16 1.3E-20 191.9 27.7 275 452-761 82-436 (706)
155 3hfq_A Uncharacterized protein 99.7 1.5E-14 5.1E-19 161.3 30.7 201 553-760 38-271 (347)
156 1jof_A Carboxy-CIS,CIS-muconat 99.7 5E-15 1.7E-19 167.4 26.1 248 450-760 38-341 (365)
157 1q7f_A NHL, brain tumor CG1071 99.7 1.9E-13 6.4E-18 148.1 35.1 246 448-760 26-280 (286)
158 3o4h_A Acylamino-acid-releasin 99.6 6.8E-15 2.3E-19 176.8 22.8 183 559-760 114-315 (582)
159 3pe7_A Oligogalacturonate lyas 99.6 1.9E-14 6.6E-19 162.5 24.5 254 437-760 16-329 (388)
160 1z68_A Fibroblast activation p 99.6 8.8E-16 3E-20 189.2 14.0 241 456-761 20-347 (719)
161 1jmx_B Amine dehydrogenase; ox 99.6 1.1E-14 3.8E-19 161.1 21.1 239 560-855 5-335 (349)
162 4a5s_A Dipeptidyl peptidase 4 99.6 7.3E-15 2.5E-19 182.2 19.9 249 452-761 17-354 (740)
163 3pe7_A Oligogalacturonate lyas 99.6 9E-14 3.1E-18 157.0 26.4 259 437-759 66-381 (388)
164 3fvz_A Peptidyl-glycine alpha- 99.6 6.1E-13 2.1E-17 148.1 29.9 200 552-760 88-322 (329)
165 1z68_A Fibroblast activation p 99.6 2.2E-14 7.4E-19 176.7 18.0 255 436-760 41-391 (719)
166 3scy_A Hypothetical bacterial 99.6 1.2E-12 4.1E-17 146.8 30.2 202 553-759 48-290 (361)
167 2oiz_A Aromatic amine dehydrog 99.6 7E-13 2.4E-17 150.0 27.9 264 437-761 37-335 (361)
168 2dg1_A DRP35, lactonase; beta 99.5 5.4E-12 1.8E-16 139.6 33.8 245 443-751 36-301 (333)
169 3c5m_A Oligogalacturonate lyas 99.5 1.6E-13 5.6E-18 154.7 18.7 249 438-761 17-330 (396)
170 3e5z_A Putative gluconolactona 99.5 8.3E-12 2.8E-16 136.1 30.6 241 443-760 19-286 (296)
171 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.8E-12 6.2E-17 146.3 25.7 198 555-759 40-290 (365)
172 3azo_A Aminopeptidase; POP fam 99.5 5.1E-13 1.7E-17 162.7 22.0 255 445-759 17-322 (662)
173 4a5s_A Dipeptidyl peptidase 4 99.5 1.5E-12 5.2E-17 161.3 25.8 260 436-761 97-450 (740)
174 3c5m_A Oligogalacturonate lyas 99.5 7.9E-13 2.7E-17 149.1 19.7 251 454-758 83-380 (396)
175 1rwi_B Serine/threonine-protei 99.4 1.5E-11 5E-16 131.5 25.3 237 453-761 25-265 (270)
176 2gop_A Trilobed protease; beta 99.4 2.2E-11 7.4E-16 135.3 27.5 220 452-759 59-330 (347)
177 2xdw_A Prolyl endopeptidase; a 99.4 1.8E-11 6.1E-16 150.9 28.0 242 449-762 122-416 (710)
178 3azo_A Aminopeptidase; POP fam 99.4 9.9E-12 3.4E-16 151.3 23.6 205 553-761 128-370 (662)
179 2dg1_A DRP35, lactonase; beta 99.4 1.7E-11 5.8E-16 135.6 23.0 201 549-759 39-262 (333)
180 3dsm_A Uncharacterized protein 99.4 7.5E-11 2.6E-15 131.3 26.5 235 452-762 44-303 (328)
181 2bkl_A Prolyl endopeptidase; m 99.4 8.7E-12 3E-16 153.3 19.9 243 449-762 118-399 (695)
182 2z2n_A Virginiamycin B lyase; 99.4 1.6E-09 5.6E-14 116.7 34.8 240 447-759 10-254 (299)
183 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 5.4E-10 1.8E-14 121.9 30.8 247 448-760 14-299 (314)
184 2gop_A Trilobed protease; beta 99.3 1.3E-10 4.6E-15 128.9 26.1 183 555-760 59-291 (347)
185 2oiz_A Aromatic amine dehydrog 99.3 7.9E-11 2.7E-15 133.1 23.6 257 559-867 54-358 (361)
186 2z2n_A Virginiamycin B lyase; 99.3 6.7E-09 2.3E-13 111.8 36.4 237 449-760 54-295 (299)
187 2mad_H Methylamine dehydrogena 99.3 4.2E-09 1.4E-13 119.6 35.5 266 435-762 51-352 (373)
188 3no2_A Uncharacterized protein 99.3 5.7E-10 2E-14 121.2 27.2 210 462-748 4-231 (276)
189 1q7f_A NHL, brain tumor CG1071 99.3 1.5E-09 5E-14 117.3 29.6 199 551-759 26-237 (286)
190 3fvz_A Peptidyl-glycine alpha- 99.3 6.3E-10 2.2E-14 123.6 27.3 220 437-717 75-321 (329)
191 1qks_A Cytochrome CD1 nitrite 99.3 2E-09 7E-14 128.7 33.5 258 435-761 181-478 (567)
192 2qc5_A Streptogramin B lactona 99.2 1.6E-08 5.4E-13 109.0 34.6 239 448-759 16-259 (300)
193 1yr2_A Prolyl oligopeptidase; 99.2 3.6E-10 1.2E-14 140.0 23.3 239 449-762 160-443 (741)
194 3dsm_A Uncharacterized protein 99.2 1.6E-09 5.4E-14 120.5 25.9 214 437-717 70-301 (328)
195 2qc5_A Streptogramin B lactona 99.2 4.3E-08 1.5E-12 105.5 34.7 236 449-759 59-299 (300)
196 3e5z_A Putative gluconolactona 99.2 5.8E-09 2E-13 113.4 26.9 197 546-759 19-245 (296)
197 3hrp_A Uncharacterized protein 99.2 1.3E-08 4.5E-13 116.9 30.5 243 451-759 130-409 (409)
198 3no2_A Uncharacterized protein 99.2 4.4E-09 1.5E-13 114.3 24.9 190 563-762 3-197 (276)
199 1qks_A Cytochrome CD1 nitrite 99.1 9.4E-09 3.2E-13 123.0 28.2 197 565-762 167-375 (567)
200 2xdw_A Prolyl endopeptidase; a 99.1 8.9E-09 3E-13 126.8 27.4 201 552-761 122-369 (710)
201 3dr2_A Exported gluconolactona 99.1 2.4E-08 8.1E-13 109.5 27.9 235 445-757 38-303 (305)
202 3g4e_A Regucalcin; six bladed 99.1 7.3E-08 2.5E-12 105.2 31.4 232 447-749 8-261 (297)
203 3sjl_D Methylamine dehydrogena 99.1 1.3E-08 4.3E-13 115.3 24.8 267 435-762 63-365 (386)
204 2ghs_A AGR_C_1268P; regucalcin 99.1 1.1E-07 3.8E-12 105.4 32.0 226 453-750 50-292 (326)
205 1xip_A Nucleoporin NUP159; bet 99.1 2.6E-09 8.7E-14 121.3 18.8 188 453-704 39-230 (388)
206 2qe8_A Uncharacterized protein 99.1 3.4E-08 1.2E-12 110.4 27.0 248 452-757 17-318 (343)
207 3iuj_A Prolyl endopeptidase; h 99.0 7.8E-09 2.7E-13 127.0 23.4 241 449-761 126-406 (693)
208 2bkl_A Prolyl endopeptidase; m 99.0 6.2E-09 2.1E-13 127.9 21.6 194 552-759 118-348 (695)
209 1rwi_B Serine/threonine-protei 99.0 1.8E-08 6.1E-13 107.3 21.7 194 556-760 25-222 (270)
210 3c75_H MADH, methylamine dehyd 99.0 1.9E-08 6.5E-13 115.6 23.3 268 435-762 103-404 (426)
211 3g4e_A Regucalcin; six bladed 98.9 4.3E-07 1.5E-11 99.0 29.8 198 551-761 9-230 (297)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 2E-07 6.9E-12 101.3 26.5 200 550-761 13-257 (314)
213 1xip_A Nucleoporin NUP159; bet 98.9 6.6E-08 2.3E-12 109.7 23.1 133 449-653 86-230 (388)
214 2mad_H Methylamine dehydrogena 98.9 8.8E-07 3E-11 100.4 32.2 239 559-851 70-356 (373)
215 1yr2_A Prolyl oligopeptidase; 98.9 1.7E-07 5.9E-12 115.9 25.2 192 553-759 161-392 (741)
216 1mda_H Methylamine dehydrogena 98.9 2.1E-08 7.2E-13 113.3 15.5 260 435-762 50-348 (368)
217 3hrp_A Uncharacterized protein 98.8 3E-07 1E-11 105.5 24.9 200 555-760 131-354 (409)
218 3sjl_D Methylamine dehydrogena 98.8 5.2E-07 1.8E-11 102.0 24.1 233 458-762 39-322 (386)
219 2ghs_A AGR_C_1268P; regucalcin 98.8 4.2E-06 1.5E-10 92.6 30.8 190 555-759 49-259 (326)
220 2ece_A 462AA long hypothetical 98.7 3E-06 1E-10 96.8 26.5 190 558-748 141-399 (462)
221 2iwa_A Glutamine cyclotransfer 98.7 5E-06 1.7E-10 89.2 25.8 213 440-717 8-236 (266)
222 1yiq_A Quinohemoprotein alcoho 98.6 6.8E-06 2.3E-10 100.7 27.1 189 573-764 181-509 (689)
223 3dr2_A Exported gluconolactona 98.6 3.8E-06 1.3E-10 91.7 21.6 198 546-759 36-266 (305)
224 3c75_H MADH, methylamine dehyd 98.5 3.4E-06 1.2E-10 96.8 21.7 194 559-761 122-360 (426)
225 1kb0_A Quinohemoprotein alcoho 98.5 3.4E-06 1.1E-10 103.2 22.2 188 574-764 189-511 (677)
226 2hz6_A Endoplasmic reticulum t 98.5 1E-07 3.4E-12 107.9 7.1 219 462-761 8-237 (369)
227 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.9E-05 6.5E-10 88.6 25.5 180 565-762 143-339 (376)
228 3iuj_A Prolyl endopeptidase; h 98.5 3E-06 1E-10 104.0 20.2 195 552-760 126-359 (693)
229 3nol_A Glutamine cyclotransfer 98.4 3.9E-05 1.3E-09 81.6 24.9 199 441-705 31-243 (262)
230 2hz6_A Endoplasmic reticulum t 98.4 2.5E-08 8.7E-13 112.9 0.2 179 565-763 9-195 (369)
231 3nok_A Glutaminyl cyclase; bet 98.4 2.2E-05 7.6E-10 83.5 22.8 197 442-705 44-253 (268)
232 1npe_A Nidogen, entactin; glyc 98.4 0.00016 5.3E-09 77.1 29.3 195 555-761 36-239 (267)
233 3q7m_A Lipoprotein YFGL, BAMB; 98.4 5.4E-05 1.9E-09 84.8 25.7 181 565-761 103-297 (376)
234 2qe8_A Uncharacterized protein 98.4 9.6E-06 3.3E-10 90.3 19.1 202 449-714 64-317 (343)
235 2fp8_A Strictosidine synthase; 98.4 5.1E-05 1.7E-09 83.4 24.6 258 452-760 19-313 (322)
236 3mbr_X Glutamine cyclotransfer 98.3 0.00013 4.5E-09 76.8 26.0 199 441-705 9-222 (243)
237 3hxj_A Pyrrolo-quinoline quino 98.3 2E-05 6.7E-10 86.1 20.1 180 561-760 143-324 (330)
238 2p4o_A Hypothetical protein; p 98.3 0.001 3.4E-08 72.5 31.9 239 438-751 19-279 (306)
239 1fwx_A Nitrous oxide reductase 98.3 1.6E-05 5.5E-10 93.8 18.1 186 573-760 173-431 (595)
240 2iwa_A Glutamine cyclotransfer 98.2 0.00016 5.6E-09 77.4 24.0 197 556-760 22-237 (266)
241 1kb0_A Quinohemoprotein alcoho 98.2 3.6E-05 1.2E-09 94.1 20.6 192 565-758 128-421 (677)
242 4a2l_A BT_4663, two-component 98.2 0.00065 2.2E-08 84.4 32.3 199 555-761 215-437 (795)
243 3hxj_A Pyrrolo-quinoline quino 98.2 1.2E-05 4.2E-10 87.7 14.4 174 565-758 107-282 (330)
244 1fwx_A Nitrous oxide reductase 98.2 4.2E-05 1.4E-09 90.2 18.9 186 565-760 101-361 (595)
245 4a2l_A BT_4663, two-component 98.2 0.0022 7.4E-08 79.7 35.6 244 451-761 262-527 (795)
246 1kv9_A Type II quinohemoprotei 98.2 6.9E-05 2.4E-09 91.4 21.4 187 574-763 177-491 (668)
247 1yiq_A Quinohemoprotein alcoho 98.2 0.00015 5.2E-09 88.7 24.5 180 559-749 239-538 (689)
248 3nol_A Glutamine cyclotransfer 98.1 0.00025 8.4E-09 75.4 22.2 184 557-749 45-244 (262)
249 1npe_A Nidogen, entactin; glyc 98.1 0.0022 7.4E-08 68.1 30.1 176 555-742 79-263 (267)
250 2ece_A 462AA long hypothetical 98.1 0.00011 3.7E-09 84.0 20.6 188 565-760 96-352 (462)
251 3nok_A Glutaminyl cyclase; bet 98.1 0.00038 1.3E-08 74.0 21.9 183 556-748 56-253 (268)
252 1mda_H Methylamine dehydrogena 98.0 2.1E-05 7.3E-10 88.6 12.7 101 565-667 32-158 (368)
253 3mbr_X Glutamine cyclotransfer 98.0 0.0013 4.4E-08 69.2 25.4 186 555-749 21-223 (243)
254 3qqz_A Putative uncharacterize 98.0 0.002 6.9E-08 68.5 26.3 207 549-758 21-251 (255)
255 2fp8_A Strictosidine synthase; 97.9 0.00091 3.1E-08 73.3 22.7 195 551-758 15-267 (322)
256 2ad6_A Methanol dehydrogenase 97.9 0.00091 3.1E-08 79.9 23.1 195 566-763 161-497 (571)
257 3v65_B Low-density lipoprotein 97.8 0.0089 3E-07 67.5 29.2 201 552-761 113-319 (386)
258 3v64_C Agrin; beta propeller, 97.8 0.013 4.5E-07 65.2 30.0 199 553-760 71-275 (349)
259 2p4o_A Hypothetical protein; p 97.8 0.0033 1.1E-07 68.3 24.4 198 555-759 32-241 (306)
260 1ijq_A LDL receptor, low-densi 97.8 0.016 5.4E-07 63.4 30.0 200 553-761 28-239 (316)
261 4hw6_A Hypothetical protein, I 97.8 0.0049 1.7E-07 70.9 26.7 203 555-759 182-432 (433)
262 3v9f_A Two-component system se 97.7 0.012 4.3E-07 72.6 31.4 197 555-761 363-569 (781)
263 3tc9_A Hypothetical hydrolase; 97.7 0.0073 2.5E-07 69.4 27.0 203 555-759 179-429 (430)
264 3v9f_A Two-component system se 97.7 0.028 9.5E-07 69.5 34.1 200 555-761 211-437 (781)
265 3p5b_L Low density lipoprotein 97.7 0.051 1.7E-06 61.6 32.8 209 544-761 101-321 (400)
266 1k3i_A Galactose oxidase precu 97.7 0.00062 2.1E-08 82.7 17.8 202 559-761 247-498 (656)
267 1w6s_A Methanol dehydrogenase 97.6 0.0034 1.2E-07 75.2 23.1 101 573-674 180-349 (599)
268 2xe4_A Oligopeptidase B; hydro 97.6 0.0026 8.8E-08 78.6 21.6 147 559-716 225-398 (751)
269 1ijq_A LDL receptor, low-densi 97.6 0.015 5.3E-07 63.5 25.7 179 574-760 9-195 (316)
270 3kya_A Putative phosphatase; s 97.6 0.018 6.1E-07 67.0 27.2 207 556-763 187-478 (496)
271 3v64_C Agrin; beta propeller, 97.5 0.031 1.1E-06 62.1 28.0 195 557-760 36-234 (349)
272 2ad6_A Methanol dehydrogenase 97.5 0.016 5.4E-07 69.2 25.8 191 565-759 115-415 (571)
273 3sov_A LRP-6, low-density lipo 97.5 0.041 1.4E-06 60.3 27.3 197 555-761 35-239 (318)
274 1flg_A Protein (quinoprotein e 97.5 0.0091 3.1E-07 71.4 23.7 145 617-763 291-519 (582)
275 3qqz_A Putative uncharacterize 97.4 0.088 3E-06 55.8 28.0 206 445-715 20-250 (255)
276 3v65_B Low-density lipoprotein 97.4 0.027 9.2E-07 63.5 25.1 193 559-760 81-277 (386)
277 3m0c_C LDL receptor, low-densi 97.3 0.14 4.7E-06 63.3 31.7 206 547-761 416-633 (791)
278 3p5b_L Low density lipoprotein 97.3 0.046 1.6E-06 62.0 25.6 186 566-760 84-277 (400)
279 2xe4_A Oligopeptidase B; hydro 97.2 0.011 3.9E-07 72.8 21.1 193 556-758 175-398 (751)
280 2xbg_A YCF48-like protein; pho 97.1 0.35 1.2E-05 52.9 29.7 187 555-760 80-278 (327)
281 2p9w_A MAL S 1 allergenic prot 97.1 0.06 2.1E-06 59.0 22.8 199 556-759 14-264 (334)
282 1kv9_A Type II quinohemoprotei 97.1 0.0079 2.7E-07 73.2 17.6 194 565-764 66-337 (668)
283 3tc9_A Hypothetical hydrolase; 97.0 0.019 6.5E-07 65.8 19.1 157 596-760 138-301 (430)
284 3amr_A 3-phytase; beta-propell 97.0 0.082 2.8E-06 58.4 22.7 187 565-759 40-262 (355)
285 1k3i_A Galactose oxidase precu 97.0 0.0091 3.1E-07 72.4 16.7 233 450-749 241-530 (656)
286 4hw6_A Hypothetical protein, I 97.0 0.034 1.2E-06 63.8 20.7 196 556-758 140-372 (433)
287 3amr_A 3-phytase; beta-propell 96.8 0.15 5.2E-06 56.3 23.3 142 574-717 98-262 (355)
288 3sov_A LRP-6, low-density lipo 96.8 0.17 5.9E-06 55.3 24.1 179 574-760 12-197 (318)
289 3m0c_C LDL receptor, low-densi 96.8 0.23 7.9E-06 61.2 27.4 180 573-760 402-589 (791)
290 4a0p_A LRP6, LRP-6, low-densit 96.8 0.56 1.9E-05 56.3 30.2 197 555-762 37-239 (628)
291 1flg_A Protein (quinoprotein e 96.8 0.038 1.3E-06 66.0 19.7 60 616-675 465-524 (582)
292 2p9w_A MAL S 1 allergenic prot 96.7 0.053 1.8E-06 59.4 18.1 166 593-760 11-215 (334)
293 2xbg_A YCF48-like protein; pho 96.6 0.98 3.4E-05 49.2 28.3 190 557-758 124-320 (327)
294 1w6s_A Methanol dehydrogenase 96.6 0.069 2.4E-06 63.9 19.8 196 565-764 62-346 (599)
295 1n7d_A LDL receptor, low-densi 96.4 0.0053 1.8E-07 75.1 9.3 197 555-760 406-614 (699)
296 3s94_A LRP-6, low-density lipo 96.3 0.44 1.5E-05 57.2 24.6 201 553-762 38-245 (619)
297 2ism_A Putative oxidoreductase 96.2 1.4 4.8E-05 48.6 26.8 190 555-749 75-334 (352)
298 3kya_A Putative phosphatase; s 96.2 0.3 1E-05 56.7 21.3 155 556-715 140-338 (496)
299 1n7d_A LDL receptor, low-densi 96.0 0.021 7.3E-07 69.7 11.6 178 574-760 385-571 (699)
300 3a9g_A Putative uncharacterize 96.0 2.5 8.5E-05 46.7 28.4 189 555-748 73-330 (354)
301 4a0p_A LRP6, LRP-6, low-densit 95.9 2.1 7.3E-05 51.2 28.1 197 555-761 340-550 (628)
302 2g8s_A Glucose/sorbosone dehyd 95.8 2.7 9.4E-05 46.3 26.8 70 687-758 271-350 (353)
303 2xzh_A Clathrin heavy chain 1; 95.7 3.2 0.00011 45.3 30.8 203 556-761 108-333 (365)
304 3sre_A PON1, serum paraoxonase 95.5 3 0.0001 46.1 25.2 191 556-757 51-295 (355)
305 3pbp_A Nucleoporin NUP82; beta 95.4 0.58 2E-05 52.8 19.1 149 606-756 31-208 (452)
306 3s94_A LRP-6, low-density lipo 95.4 4.6 0.00016 48.2 28.6 196 555-760 349-551 (619)
307 3sre_A PON1, serum paraoxonase 95.2 0.89 3E-05 50.4 19.9 139 615-760 81-252 (355)
308 1tl2_A L10, protein (tachylect 95.1 0.19 6.4E-06 51.8 12.7 182 566-761 5-209 (236)
309 3ei3_A DNA damage-binding prot 95.0 3.5 0.00012 53.0 27.1 180 565-757 844-1059(1158)
310 3das_A Putative oxidoreductase 94.7 6.3 0.00022 43.4 28.3 243 447-748 27-326 (347)
311 2vpj_A Kelch-like protein 12; 94.6 0.97 3.3E-05 48.1 17.8 184 564-761 62-279 (301)
312 2xn4_A Kelch-like protein 2; s 94.6 1.2 4.2E-05 47.4 18.5 185 564-761 61-277 (302)
313 3ott_A Two-component system se 94.5 12 0.0004 45.5 31.0 192 555-761 63-261 (758)
314 1bpo_A Protein (clathrin); cla 94.4 8.4 0.00029 43.6 31.5 198 561-761 112-332 (494)
315 1bpo_A Protein (clathrin); cla 94.4 8.8 0.0003 43.4 25.5 177 573-761 84-290 (494)
316 3ii7_A Kelch-like protein 7; p 94.4 1.2 4.2E-05 47.4 17.9 185 564-761 55-273 (306)
317 1cru_A Protein (soluble quinop 94.3 9.6 0.00033 43.5 31.9 34 451-484 26-59 (454)
318 2ism_A Putative oxidoreductase 94.0 3.9 0.00013 44.9 21.4 99 553-654 29-152 (352)
319 2xzh_A Clathrin heavy chain 1; 93.8 9.3 0.00032 41.6 27.2 189 573-779 85-303 (365)
320 3a9g_A Putative uncharacterize 93.3 9 0.00031 42.1 22.8 100 553-654 27-152 (354)
321 4asc_A Kelch repeat and BTB do 93.0 2.6 8.9E-05 45.2 17.6 188 560-760 41-277 (315)
322 3pbp_A Nucleoporin NUP82; beta 92.9 1.1 3.6E-05 50.7 14.0 145 565-714 32-208 (452)
323 2vpj_A Kelch-like protein 12; 92.7 2.1 7.2E-05 45.4 16.1 183 565-761 15-232 (301)
324 2be1_A Serine/threonine-protei 92.5 3.7 0.00013 45.0 17.8 92 572-664 64-181 (339)
325 2uvk_A YJHT; unknown function, 92.4 2 6.8E-05 46.9 15.8 187 564-761 65-343 (357)
326 3ott_A Two-component system se 92.1 26 0.00089 42.4 30.9 182 556-756 104-303 (758)
327 1zgk_A Kelch-like ECH-associat 92.0 4.7 0.00016 42.9 17.9 183 564-760 70-287 (308)
328 3ii7_A Kelch-like protein 7; p 91.8 3.9 0.00013 43.4 16.9 181 566-761 13-226 (306)
329 2xn4_A Kelch-like protein 2; s 91.7 3.9 0.00013 43.3 16.8 181 566-760 17-229 (302)
330 2woz_A Kelch repeat and BTB do 91.3 5.3 0.00018 42.7 17.4 188 560-760 52-287 (318)
331 3das_A Putative oxidoreductase 91.1 6.3 0.00021 43.4 17.7 109 594-705 31-157 (347)
332 3ei3_A DNA damage-binding prot 91.0 44 0.0015 42.8 34.7 184 554-748 553-755 (1158)
333 1cru_A Protein (soluble quinop 90.5 6 0.00021 45.2 17.6 109 594-705 26-161 (454)
334 1zgk_A Kelch-like ECH-associat 90.4 3.6 0.00012 43.9 14.9 183 565-761 25-241 (308)
335 2be1_A Serine/threonine-protei 89.9 0.47 1.6E-05 52.3 7.2 195 565-763 10-234 (339)
336 4asc_A Kelch repeat and BTB do 89.6 18 0.00062 38.3 19.7 181 567-761 7-222 (315)
337 1xi4_A Clathrin heavy chain; a 89.1 9.3 0.00032 49.4 18.7 202 557-761 108-332 (1630)
338 1tl2_A L10, protein (tachylect 88.6 2.3 7.8E-05 43.8 10.6 138 607-754 4-157 (236)
339 2g8s_A Glucose/sorbosone dehyd 87.7 6.4 0.00022 43.2 14.7 108 594-705 17-147 (353)
340 3b7f_A Glycosyl hydrolase, BNR 86.6 28 0.00096 38.3 19.5 158 555-715 55-259 (394)
341 2woz_A Kelch repeat and BTB do 86.3 19 0.00066 38.2 17.3 180 567-761 18-232 (318)
342 3uc1_A DNA gyrase subunit A; D 85.4 42 0.0014 36.4 19.4 111 556-667 147-279 (327)
343 2zwa_A Leucine carboxyl methyl 84.4 16 0.00054 44.1 17.0 195 563-761 396-636 (695)
344 3sbq_A Nitrous-oxide reductase 81.6 48 0.0017 38.7 18.2 195 565-760 142-408 (638)
345 1xi4_A Clathrin heavy chain; a 81.1 16 0.00056 47.2 15.4 194 562-767 73-296 (1630)
346 3b7f_A Glycosyl hydrolase, BNR 80.2 73 0.0025 34.8 19.7 189 565-756 22-258 (394)
347 3s25_A Hypothetical 7-bladed b 79.2 58 0.002 34.7 17.5 161 574-760 36-216 (302)
348 3no0_A DNA gyrase subunit A; D 78.7 69 0.0024 33.6 20.1 200 556-760 25-246 (276)
349 3q6k_A 43.2 kDa salivary prote 77.0 95 0.0033 34.3 21.9 171 576-748 124-342 (381)
350 3qhy_B Beta-lactamase inhibito 76.8 77 0.0026 33.2 18.3 182 556-761 64-247 (282)
351 1wp5_A Topoisomerase IV; broke 76.4 89 0.003 33.7 25.5 197 564-760 49-277 (323)
352 2zwa_A Leucine carboxyl methyl 75.3 36 0.0012 41.0 15.9 105 564-669 451-579 (695)
353 3uc1_A DNA gyrase subunit A; D 73.8 1E+02 0.0035 33.2 22.9 149 565-716 109-277 (327)
354 3no0_A DNA gyrase subunit A; D 73.5 87 0.003 32.9 16.6 149 564-716 79-244 (276)
355 2wg3_C Hedgehog-interacting pr 71.7 41 0.0014 38.3 14.5 114 637-751 14-160 (463)
356 1zi0_A DNA gyrase subunit A; b 70.5 1.2E+02 0.004 32.4 25.7 195 564-760 52-277 (307)
357 3s25_A Hypothetical 7-bladed b 69.1 1.2E+02 0.0042 32.1 17.0 159 575-760 88-255 (302)
358 1suu_A DNA gyrase subunit A; t 66.9 1.4E+02 0.0047 31.9 21.4 191 565-761 8-232 (312)
359 2uvk_A YJHT; unknown function, 64.1 49 0.0017 35.5 12.6 91 564-657 19-128 (357)
360 3sbq_A Nitrous-oxide reductase 63.8 24 0.00082 41.2 10.0 137 618-760 299-478 (638)
361 3l6v_A GYRA, DNA gyrase subuni 61.9 1.9E+02 0.0065 31.7 22.0 194 565-763 7-268 (370)
362 3qhy_B Beta-lactamase inhibito 61.2 93 0.0032 32.6 13.8 182 556-761 25-208 (282)
363 1sqj_A OXG-RCBH, oligoxylogluc 58.7 2E+02 0.0068 35.0 18.0 161 594-754 14-195 (789)
364 1zi0_A DNA gyrase subunit A; b 57.1 2E+02 0.0068 30.5 22.2 191 565-760 3-226 (307)
365 1suu_A DNA gyrase subunit A; t 56.7 2E+02 0.007 30.5 27.6 196 564-760 57-283 (312)
366 3q6k_A 43.2 kDa salivary prote 53.8 2.6E+02 0.0089 30.8 19.5 143 617-760 123-306 (381)
367 4gq2_M Nucleoporin NUP120; bet 48.9 1.6E+02 0.0055 36.7 15.0 39 637-675 236-274 (950)
368 4gq2_M Nucleoporin NUP120; bet 40.5 31 0.0011 43.3 6.6 39 452-490 236-274 (950)
369 4hvt_A Ritya.17583.B, post-pro 38.7 5.8E+02 0.02 30.5 22.3 178 574-759 215-429 (711)
370 3a0f_A Xyloglucanase; beta-pro 37.1 6.2E+02 0.021 30.3 19.0 160 592-751 18-203 (763)
371 3l6v_A GYRA, DNA gyrase subuni 36.6 4.5E+02 0.015 28.6 29.0 206 555-760 46-316 (370)
372 3kci_A Probable E3 ubiquitin-p 30.6 5.4E+02 0.019 27.8 25.7 197 556-761 106-346 (389)
373 2cn3_A Xyloglucanase, beta-1,4 30.1 6.6E+02 0.023 29.9 16.0 113 596-708 24-153 (737)
374 4fhn_B Nucleoporin NUP120; pro 28.5 33 0.0011 43.9 4.1 38 453-490 239-276 (1139)
375 2cn3_A Xyloglucanase, beta-1,4 27.3 8.5E+02 0.029 28.9 16.6 102 555-657 23-153 (737)
376 2wg3_C Hedgehog-interacting pr 26.0 7.3E+02 0.025 27.8 28.9 29 452-480 14-43 (463)
377 3f7f_A Nucleoporin NUP120; nuc 25.9 71 0.0024 38.4 5.9 37 452-490 222-258 (729)
378 4fhn_B Nucleoporin NUP120; pro 24.6 2.2E+02 0.0077 36.2 10.8 36 731-766 239-274 (1139)
379 3kci_A Probable E3 ubiquitin-p 23.9 7E+02 0.024 26.8 24.6 197 557-760 55-293 (389)
380 1sqj_A OXG-RCBH, oligoxylogluc 21.6 1.1E+03 0.037 28.2 21.7 155 554-713 14-196 (789)
381 1zvt_A Topoisomerase IV subuni 20.1 7E+02 0.024 25.4 14.9 151 608-761 3-164 (256)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-39 Score=387.87 Aligned_cols=477 Identities=18% Similarity=0.284 Sum_probs=347.4
Q ss_pred cCCcEEEEeeCCCCcEE----------EEeeccCCCcee---------EEEecCCCceeeeeehhhccCCCcceeeeecc
Q 002086 287 RLGAFFLIKNLDTGKEF----------IVNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRR 347 (969)
Q Consensus 287 ~~~~~~~i~~ld~g~~~----------vv~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~ 347 (969)
+.++.++|||+ +|+.+ ....|++||.++ +|||+ +++. +..+.||...|.++++.
T Consensus 35 ~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~-----~~~~~~~~~~v~~~~~s 107 (577)
T 2ymu_A 35 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQL-----LQTLTGHSSSVRGVAFS 107 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE-----EEEECCCSSCEEEEEEC
T ss_pred eCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCE-----EEEEECCCCCEEEEEEC
Confidence 35678888886 34332 234466776655 89996 5555 35678999999999998
Q ss_pred cccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEE
Q 002086 348 ENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVK 427 (969)
Q Consensus 348 ~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~ 427 (969)
.+...+++++.+..+..|....... ..............+.++...+... ..... +.
T Consensus 108 ~d~~~l~~~~~d~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~---------------~~~~~--~~ 164 (577)
T 2ymu_A 108 PDGQTIASASDDKTVKLWNRNGQLL------QTLTGHSSSVWGVAFSPDGQTIASA---------------SDDKT--VK 164 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTCCEE------EEECCCSSCEEEEEECTTSSCEEEE---------------ETTSE--EE
T ss_pred CCCCEEEEEcCCCceeeccccccee------eeccCCCCceeeeeeecCCccceec---------------ccccc--ee
Confidence 8888888888888777665321111 1122222333344444444332111 01111 11
Q ss_pred EccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCC
Q 002086 428 VRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKA 507 (969)
Q Consensus 428 v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~ 507 (969)
++ . ........+..|.+.|.+++|+|++++|++++.|+.|++||. +++.+..+.++...+..+.+.+....
T Consensus 165 ~~-------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 165 LW-------N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp EE-------C-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred cc-------c-cceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCE
Confidence 11 1 123445667889999999999999999999999999999996 46666666666666655554443221
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc
Q 002086 508 SSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS 586 (969)
Q Consensus 508 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~ 586 (969)
....+ ......+|....+.+..+.+|...|.+++|+| +..|++++.|++|++||... +
T Consensus 236 l~~~~--------------------~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~ 294 (577)
T 2ymu_A 236 IASAS--------------------DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-Q 294 (577)
T ss_dssp EEEEE--------------------TTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-C
T ss_pred EEEEe--------------------CCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-c
Confidence 11100 01112456666777888999999999999999 78999999999999999764 4
Q ss_pred EEEE-eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002086 587 CLKL-FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSI 665 (969)
Q Consensus 587 ~i~~-~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl 665 (969)
.+.. .+|...|.+++|+| ++.+|++++.|+.|++||+....+..+..+...+.+++|+|++++|++|+.||.|++||.
T Consensus 295 ~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 4444 48999999999999 999999999999999999998888888889999999999999999999999999999996
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
.. +.... ...|...|.+++|+|++ .+|++++.|+.|++||... ........|...|++++|+||+++|+
T Consensus 374 ~~-~~~~~--------~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 374 NG-QLLQT--------LTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp TC-CEEEE--------EECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CC-CEEEE--------ecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEE
Confidence 54 33221 25688899999999998 7999999999999999543 22233345677899999999999999
Q ss_pred EEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCC
Q 002086 746 SASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPT 825 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~ 825 (969)
+++.|+.|++||+.. +.+.....+.. .....+++|+
T Consensus 443 ~~~~d~~v~~w~~~~-------~~~~~~~~~~~-------------------------------------~v~~~~~spd 478 (577)
T 2ymu_A 443 SASDDKTVKLWNRNG-------QLLQTLTGHSS-------------------------------------SVRGVAFSPD 478 (577)
T ss_dssp EEETTSEEEEEETTS-------CEEEEEECCSS-------------------------------------CEEEEEECTT
T ss_pred EEcCCCEEEEEECCC-------CEEEEEcCCCC-------------------------------------CEEEEEEcCC
Confidence 999999999999753 22211111111 1123457889
Q ss_pred CCCccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccC-CCccc
Q 002086 826 KEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 826 ~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s-~~~~r 880 (969)
+.++++++.++.+..|.. ++...+.+..|...+.++.++|.-.-+++.+ +..+|
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEE
Confidence 999999999999999985 4666777788999999999999866555554 45555
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.9e-40 Score=396.89 Aligned_cols=438 Identities=15% Similarity=0.158 Sum_probs=324.8
Q ss_pred eeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccc
Q 002086 295 KNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSK 374 (969)
Q Consensus 295 ~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k 374 (969)
++. +|+.++... +..++|||+++++. ...+.||...|.++++..++..+++++.|..+..|..... .
T Consensus 26 ~sp-dg~~l~~~~----~~~v~l~~~~~~~~-----~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~---~ 92 (611)
T 1nr0_A 26 NTP-AGDKIQYCN----GTSVYTVPVGSLTD-----TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT---T 92 (611)
T ss_dssp ECT-TSSEEEEEE----TTEEEEEETTCSSC-----CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST---T
T ss_pred eCC-CCCEEEeCC----CCEEEEecCCCccc-----CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC---c
Confidence 444 455555442 34678999988876 3556899999999999999999999999998877763211 0
Q ss_pred cccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCE
Q 002086 375 RRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSI 454 (969)
Q Consensus 375 ~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I 454 (969)
......+..+.+.+..++|+++...+... + .+......++++..+ ....+|.+|.+.|
T Consensus 93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~----~---------~~~~~~~~v~~wd~~---------~~~~~l~gh~~~v 150 (611)
T 1nr0_A 93 HILKTTIPVFSGPVKDISWDSESKRIAAV----G---------EGRERFGHVFLFDTG---------TSNGNLTGQARAM 150 (611)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEE----E---------CCSSCSEEEEETTTC---------CBCBCCCCCSSCE
T ss_pred ceeeEeecccCCceEEEEECCCCCEEEEE----E---------CCCCceeEEEEeeCC---------CCcceecCCCCCc
Confidence 11111233344566677777776553321 0 111122344454433 3455688999999
Q ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 455 WTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 455 ~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
++++|+|++. +|++|+.|++|+|||..+++++.
T Consensus 151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~---------------------------------------------- 184 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---------------------------------------------- 184 (611)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE----------------------------------------------
T ss_pred eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee----------------------------------------------
Confidence 9999999987 69999999999999987665443
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--------ecCCCeEEEEEec
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--------AHNDYVTCIQFNP 604 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--------~h~~~V~sv~fsp 604 (969)
.+.+|...|.+++|+| +++|++|+.|++|+|||+.+++++..+ +|.+.|.+++|+|
T Consensus 185 ---------------~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 185 ---------------TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp ---------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred ---------------eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 5678999999999999 889999999999999999999998877 6999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEE--------------------------------------------EecCCCCEE
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVD--------------------------------------------WTDLHEMVT 640 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~--------------------------------------------~~~~~~~V~ 640 (969)
++.+|++++.|++|++||+.+++.+. +.+|...|+
T Consensus 250 -dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~ 328 (611)
T 1nr0_A 250 -DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328 (611)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred -CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence 99999999999999999998765432 235778899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
+++|+|+|++|++++.|++|++||+.++...... ...|...|.+++|++++ .+++++.|+.+++|+.....
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~-------~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGISNRVF-------PDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-------SCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSS
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec-------ccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCcc
Confidence 9999999999999999999999999988754321 14688899999999764 78899999999999853210
Q ss_pred E---------------E-------------------------EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 721 H---------------K-------------------------FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 721 ~---------------~-------------------------~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
. . .....+...+.+++|+|||++|++|+.|+.|+|||+.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 0 0 01112345678999999999999999999999999976
Q ss_pred CCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCcccc
Q 002086 761 HRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPP 840 (969)
Q Consensus 761 ~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~ 840 (969)
. .........| .......++||++.++++++.++.+..
T Consensus 480 ~------~~~~~~~~~h------------------------------------~~~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 480 A------SVSEVKTIVH------------------------------------PAEITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp T------EEEEEEEEEC------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred C------ceeeeeccCC------------------------------------CCceEEEEECCCCCEEEEEcCCCCEEE
Confidence 2 1100000000 011224567999999999999999999
Q ss_pred CCCCC-CccccC--CCCCCCCccccccCCCCCCccccC-CCccc
Q 002086 841 LPKKT-NKVERV--PSPPEEELSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 841 ~~~~s-~~~~~~--l~~pee~l~~is~hP~~~~~~~~s-~~~~r 880 (969)
|.... +.+... ...|...+.++.++|.-.-+.+.| +.++|
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEE
Confidence 98765 444433 234889999999999865455444 66666
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.7e-38 Score=379.37 Aligned_cols=376 Identities=16% Similarity=0.237 Sum_probs=280.7
Q ss_pred CcEEEEeeCCCCcE----------EEEeeccCCCcee---------EEEecCCCceeeeeehhhccCCCcceeeeecccc
Q 002086 289 GAFFLIKNLDTGKE----------FIVNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRREN 349 (969)
Q Consensus 289 ~~~~~i~~ld~g~~----------~vv~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~ 349 (969)
+..++||++++++. +.+..|++||.++ +|||+.+++.+. ...+.+|...|.++++..+
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~---~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL---KTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE---EEEEECSSSCEEEEEECTT
T ss_pred CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCccee---eEeecccCCceEEEEECCC
Confidence 35788888876543 3345577777765 999998776532 2345799999999998888
Q ss_pred cccccCCCCc----ccccccccccccccccccccccceeeeeEEEeeecCCccc-cCCCCcccchHHHHHHhhccccCcc
Q 002086 350 VNRINDSAGK----FSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKEC-INPNPLLGDQREQKEQKQNKNVSNH 424 (969)
Q Consensus 350 ~~~~~t~s~d----~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (969)
+..+++++.+ ..+..|.. ......+..+...+.++.|+++... +.+ ...+..+
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd~-------~~~~~~l~gh~~~v~~v~f~p~~~~~l~s---------------~s~D~~v 172 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFDT-------GTSNGNLTGQARAMNSVDFKPSRPFRIIS---------------GSDDNTV 172 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETTT-------CCBCBCCCCCSSCEEEEEECSSSSCEEEE---------------EETTSCE
T ss_pred CCEEEEEECCCCceeEEEEeeC-------CCCcceecCCCCCceEEEECCCCCeEEEE---------------EeCCCeE
Confidence 7777665443 23444431 1122234445555666666666431 111 1123333
Q ss_pred eEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 425 WVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 425 ~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
. +|+....++..+|.+|.+.|++++|+|||++||||+.|++|+|||+.+++.+..+...
T Consensus 173 ~---------lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~------------ 231 (611)
T 1nr0_A 173 A---------IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD------------ 231 (611)
T ss_dssp E---------EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT------------
T ss_pred E---------EEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccc------------
Confidence 2 3355667788899999999999999999999999999999999999988776532100
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME 583 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~ 583 (969)
.....+|.+.|.+++|+| +.+|++++.|++|+|||+.
T Consensus 232 ------------------------------------------~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 232 ------------------------------------------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp ------------------------------------------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ------------------------------------------cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 001236999999999999 7899999999999999998
Q ss_pred CCcEEEEe--------------------------------------------ecCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 584 TKSCLKLF--------------------------------------------AHNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 584 t~~~i~~~--------------------------------------------~h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
+++++..+ +|...|++++|+| ++.+|++++.|++|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v 348 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHI 348 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcE
Confidence 87655322 6889999999999 99999999999999
Q ss_pred EEEeCCCceEEEEe------------------------------------------------------------------
Q 002086 620 RIWSISDRLVVDWT------------------------------------------------------------------ 633 (969)
Q Consensus 620 ~IWDl~~~~~~~~~------------------------------------------------------------------ 633 (969)
++||+.++......
T Consensus 349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~ 428 (611)
T 1nr0_A 349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 428 (611)
T ss_dssp EEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred EEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence 99998765432211
Q ss_pred -----------------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 634 -----------------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 634 -----------------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+...+.+++|+|+|++|++|+.|++|++||+.+....... . ..|...|++++|+|
T Consensus 429 ~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~------~-~~h~~~v~~v~fsp 501 (611)
T 1nr0_A 429 ACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK------T-IVHPAEITSVAFSN 501 (611)
T ss_dssp EESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE------E-EECSSCEEEEEECT
T ss_pred EeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee------c-cCCCCceEEEEECC
Confidence 11234678999999999999999999999999876542211 1 46888999999999
Q ss_pred CCCceEEEEeCCCcEEEEeCCc-ceEEEE-ee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRILDGLD-IVHKFR-GF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~-~~~~~~-~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++ .+|++++.|++|++|+... ...... .. .|...|.+++|+|||++|++|+.|++|+||++.++
T Consensus 502 dg-~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 502 NG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp TS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CC-CEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 98 8999999999999999765 222111 12 27788999999999999999999999999999874
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.9e-36 Score=358.40 Aligned_cols=478 Identities=18% Similarity=0.265 Sum_probs=347.7
Q ss_pred cCCcEEEEeeCCCCcEE----------EEeeccCCCcee---------EEEecCCCceeeeeehhhccCCCcceeeeecc
Q 002086 287 RLGAFFLIKNLDTGKEF----------IVNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRR 347 (969)
Q Consensus 287 ~~~~~~~i~~ld~g~~~----------vv~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~ 347 (969)
+.|..++|||++ |+.+ ....|++||.++ ++|+...... ....+|...|..+.+.
T Consensus 76 ~~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 76 SDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL------QTLTGHSSSVWGVAFS 148 (577)
T ss_dssp ETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE------EEECCCSSCEEEEEEC
T ss_pred eCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccccee------eeccCCCCceeeeeee
Confidence 357788899864 3332 223466666655 7888766544 4457899999999977
Q ss_pred cccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEE
Q 002086 348 ENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVK 427 (969)
Q Consensus 348 ~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~ 427 (969)
.+...+..++.+.....|..... .........+....+.+.++...+... ..++ .++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~---------------~~d~--~v~ 205 (577)
T 2ymu_A 149 PDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASA---------------SDDK--TVK 205 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTTSC------EEEEEECCSSCEEEEEECTTSSCEEEE---------------ETTS--EEE
T ss_pred cCCccceecccccceecccccee------eeeeccCCCcceeeeeecCCCCEEEEE---------------cCCC--EEE
Confidence 77766666666665554432111 111112222333444455554432221 1222 233
Q ss_pred EccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCC
Q 002086 428 VRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKA 507 (969)
Q Consensus 428 v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~ 507 (969)
++ +. ..+.++.+.+|.+.|.+++|+|++++|++++.|+.|++||.. ++.+..+.++...+..+.+.+....
T Consensus 206 ~w-------~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~ 276 (577)
T 2ymu_A 206 LW-------NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQT 276 (577)
T ss_dssp EE-------CT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EE-------eC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCE
Confidence 33 22 345678899999999999999999999999999999999964 5666667766666655544433221
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc
Q 002086 508 SSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS 586 (969)
Q Consensus 508 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~ 586 (969)
..... ......+|....+.+..+.+|...|++++|+| +.+|++++.|++|++||+....
T Consensus 277 l~~~~--------------------~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~ 336 (577)
T 2ymu_A 277 IASAS--------------------DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336 (577)
T ss_dssp EEEEE--------------------TTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE
T ss_pred EEEEe--------------------CCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 11100 01123456667778888999999999999999 7899999999999999998777
Q ss_pred EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 587 CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 587 ~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
.....+|...|.+++|+| ++.+|++++.|+.|++||.....+..+..|...|.+++|+|++++|++++.|+.|++||..
T Consensus 337 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 337 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 666668999999999999 9999999999999999998776677778888999999999999999999999999999965
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
. +.... ...|...|++++|+|++ .+|++++.|+.|++||... ........|...|.+++|+||+++|++
T Consensus 416 ~-~~~~~--------~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 416 G-QLLQT--------LTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp C-CEEEE--------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred C-CEEEE--------ecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 4 32221 25788999999999988 7999999999999999543 223344456788999999999999999
Q ss_pred EeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCC
Q 002086 747 ASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTK 826 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~ 826 (969)
++.|+.|+||+.. ++.+..+..+... ....+++|++
T Consensus 485 ~~~d~~i~iw~~~-------~~~~~~~~~h~~~-------------------------------------v~~l~~s~dg 520 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-------GQLLQTLTGHSSS-------------------------------------VRGVAFSPDG 520 (577)
T ss_dssp EETTSEEEEEETT-------SCEEEEEECCSSC-------------------------------------EEEEEECTTS
T ss_pred EeCCCEEEEEcCC-------CCEEEEEeCCCCC-------------------------------------EEEEEEcCCC
Confidence 9999999999964 2322222111111 1234578999
Q ss_pred CCccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccC-CCccc
Q 002086 827 EGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 827 ~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s-~~~~r 880 (969)
.++++++.++.+..|.. ++....++..|...+.++.++|.-..+++.+ |.++|
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 99999999999999985 4566677788999999999999866565554 44444
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.9e-35 Score=323.37 Aligned_cols=252 Identities=19% Similarity=0.280 Sum_probs=220.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+++.++|++|.+.|++|+|+|++++|++|+.||+|+|||+.+++.+.
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------------------------- 49 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------------------------- 49 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---------------------------------
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---------------------------------
Confidence 45677899999999999999999999999999999999998876544
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVT 598 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~ 598 (969)
.+.+|...|.+++|++ +++|++|+.|++|++||+.+++++..+ +|...|.
T Consensus 50 ----------------------------~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 50 ----------------------------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (304)
T ss_dssp ----------------------------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ----------------------------EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 5667899999999999 899999999999999999999998877 7999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCc-eEE-EEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDR-LVV-DWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~-~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
+++|+| ++.+|++|+.|++|++||++++ .+. .+..|...|.+++|+| ++.+|++|+.|++|++||+.........
T Consensus 102 ~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~- 179 (304)
T 2ynn_A 102 SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL- 179 (304)
T ss_dssp EEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE-
T ss_pred EEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee-
Confidence 999999 8999999999999999999876 333 4567889999999999 6789999999999999999876543221
Q ss_pred eeecccccCCCCCeEEEEEcCC-CCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPS-NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd-~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
...+...+..+.|+|. +..+|++++.|++|++||............|...|.+++|+|++.+|++|+.||+|+
T Consensus 180 ------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~ 253 (304)
T 2ynn_A 180 ------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (304)
T ss_dssp ------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEE
Confidence 1456678999999873 236899999999999999887766666667788899999999999999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
|||+.+.
T Consensus 254 iWd~~~~ 260 (304)
T 2ynn_A 254 IWNSSTY 260 (304)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9999874
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-34 Score=378.36 Aligned_cols=555 Identities=13% Similarity=0.116 Sum_probs=377.0
Q ss_pred EEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccc
Q 002086 293 LIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRM 372 (969)
Q Consensus 293 ~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~ 372 (969)
.-|.. +|+.+++. +.|| .+++||+.+++.+ ..+.+|...|.++++..++..+++++.|..+..|....
T Consensus 621 ~~~s~-~~~~l~s~--~~d~-~i~vw~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--- 688 (1249)
T 3sfz_A 621 ACFSQ-DGQRIASC--GADK-TLQVFKAETGEKL-----LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--- 688 (1249)
T ss_dssp EEECT-TSSEEEEE--ETTS-CEEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---
T ss_pred EEECC-CCCEEEEE--eCCC-eEEEEECCCCCEE-----EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC---
Confidence 34444 45555443 3545 4789999999874 45679999999999988888888888888887776432
Q ss_pred cccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEeccccc
Q 002086 373 SKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEG 452 (969)
Q Consensus 373 ~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~ 452 (969)
.+....+....+.+.++.|+++... .++.. ...++.+. +|++...+....+.+|.+
T Consensus 689 --~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~s---------g~~d~~v~---------vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 689 --GKLVHTYDEHSEQVNCCHFTNKSNH----LLLAT---------GSNDFFLK---------LWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSC----CEEEE---------EETTSCEE---------EEETTSSSEEEEECCCSS
T ss_pred --CceEEEEcCCCCcEEEEEEecCCCc----eEEEE---------EeCCCeEE---------EEECCCcchhheecCCCC
Confidence 2222233333344455555543211 01111 11222222 446777788889999999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccC-------------cccccccCCCCCccCCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTP-------------IHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~-------------v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.|++++|+|++++|++|+.||+|++||+.+++....+...... +..+.+.+........
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-------- 816 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-------- 816 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE--------
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE--------
Confidence 9999999999999999999999999999998877654322110 0011111100000000
Q ss_pred ccccCCCCCCCCcccccceeeecCC-CceeEe-ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSE-KPFCSF-IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHND 595 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~-k~~~~l-~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~ 595 (969)
......+|.... ..+..+ .+|...|.+++|+| +.++++++.|+.|++||+.++..+..+ +|..
T Consensus 817 -------------~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 817 -------------AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp -------------ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred -------------cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence 001122333322 223333 48999999999999 899999999999999999999988877 8999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCce------------------------------EE--------EEecCCC
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL------------------------------VV--------DWTDLHE 637 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~------------------------------~~--------~~~~~~~ 637 (969)
.|.+++|+| ++.+|++++.||.|++||+.+.. .. .......
T Consensus 884 ~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 884 WVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred ceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 999999999 99999999999999999975310 00 0112345
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
.+.+++|+|+++++++|+.+|.|++||+.+++.... ...|...|++++|+|++ .++++++.|+.|++||..
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~--------~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS--------GVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE--------CCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeee--------cccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECC
Confidence 699999999999999999999999999998875433 25788999999999998 799999999999999987
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcc-c
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMV-K 796 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i-~ 796 (969)
..... ....+...+.++.|++++ .+++++.||.|++||+.+++. ......+...+.+..++.. -..++ .
T Consensus 1034 ~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~------~~~~~~~~~~v~~~~~s~d--~~~l~s~ 1103 (1249)
T 3sfz_A 1034 TGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI------ERDFTCHQGTVLSCAISSD--ATKFSST 1103 (1249)
T ss_dssp TTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC------CEEEECCSSCCCCEEECSS--SSSCEEE
T ss_pred CCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce------eEEEcccCCcEEEEEECCC--CCEEEEE
Confidence 65443 344677889999999976 678899999999999998543 3333334444443333321 12222 3
Q ss_pred CCCCCccEEEcccccc------cCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCC---------CCCCCCccc
Q 002086 797 GEPPPTPVQTKKHAKR------ISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVP---------SPPEEELSL 861 (969)
Q Consensus 797 G~~~~~~v~~~~~~~~------~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l---------~~pee~l~~ 861 (969)
+.+..+.+|.....+. ........+++|++.++++++.++.+..|...++.....+ ..|...+.+
T Consensus 1104 s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp CCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred cCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence 4567777886554432 1223346779999999999999999999988777665554 456777888
Q ss_pred cccCCCCCCccccCCCccccCCCCCCcccCCCCCCCCCCCCCCCcccccccCCCCCCccccccccccCCCCCCcccccee
Q 002086 862 ISHDPGISESFTSNSSSIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSSFTNWSSWFDVGSHSSHTVQATAW 941 (969)
Q Consensus 862 is~hP~~~~~~~~s~~~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (969)
+.++|.-.-+++. +..++.=+..+.. . + ..+.....--..+.....
T Consensus 1184 l~fs~dg~~l~s~-~g~v~vwd~~~g~-----~---~-------------------------~~~~~~~~~i~~~~~s~d 1229 (1249)
T 3sfz_A 1184 VCFSPDSKTLVSA-GGYLKWWNVATGD-----S---S-------------------------QTFYTNGTNLKKIHVSPD 1229 (1249)
T ss_dssp EEECTTSSCEEEE-SSSEEEBCSSSCB-----C---C-------------------------CCCCCSSCCCCCCEECSS
T ss_pred EEECCCCCEEEEC-CCeEEEEECCCCc-----e---e-------------------------eeeeccCCcccEEEECCC
Confidence 8898886544443 3455533322111 0 0 000000000112334456
Q ss_pred eEEEEEeecCCEEEEEE
Q 002086 942 GLVIVTATLGGEIKTYQ 958 (969)
Q Consensus 942 g~~~vt~g~dg~~r~~~ 958 (969)
|..|||++.||.|++|+
T Consensus 1230 g~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1230 FRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp SCCEEEECTTCCEEEEC
T ss_pred CCEEEEecCCcEEEEEe
Confidence 78899999999999997
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1e-34 Score=349.00 Aligned_cols=452 Identities=14% Similarity=0.113 Sum_probs=332.2
Q ss_pred eeCCCCcEEEEeeccCCCceeEEEecCCC----ceeeeeehhhccCCCcc-eeeeeccc--ccccccCCCCccccccccc
Q 002086 295 KNLDTGKEFIVNEYSENGMWNKLSDLQTG----KQLTMEEFEKSVGHSPV-VKELMRRE--NVNRINDSAGKFSANSYLS 367 (969)
Q Consensus 295 ~~ld~g~~~vv~~~~~dg~~~~lWd~~tg----k~l~~~E~~~~~GHs~~-V~~l~~~~--~~~~~~t~s~d~~v~~~~~ 367 (969)
|+. +|+.+++.. +..++|||++++ +. ...+.||... |.++++.. +...+++++.|..+..|..
T Consensus 26 ~sp-dg~~l~~~~----~~~v~v~~~~~~~~~~~~-----~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 26 YDP-TTNAIAYPC----GKSAFVRCLDDGDSKVPP-----VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp EET-TTTEEEEEE----TTEEEEEECCSSCCSSCS-----EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred ECC-CCCEEEEec----CCeEEEEECCCCCCcccc-----ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 454 445555543 235789999988 55 3566899999 99999887 8888898888888877764
Q ss_pred cccccc---ccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceee
Q 002086 368 KSLRMS---KRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLC 444 (969)
Q Consensus 368 ~~~~~~---k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~ 444 (969)
...+.. .......+....+....+.|+++...+... . .+......++++. ..+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~---------~~~~~~~~v~~~d---------~~~~~ 153 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV----G---------EGRDNFGVFISWD---------SGNSL 153 (615)
T ss_dssp EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE----E---------CCSSCSEEEEETT---------TCCEE
T ss_pred CCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe----c---------cCCCCccEEEEEE---------CCCcc
Confidence 311000 111112233334455666666665543221 0 1111123444443 34467
Q ss_pred eEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..+.+|.+.|++++|+|+++ +|++++.|+.|++||+.+++.+.
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~------------------------------------ 197 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA------------------------------------ 197 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE------------------------------------
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee------------------------------------
Confidence 78889999999999999998 89999999999999998776654
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCC---CEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-----ec
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLD---DVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-----AH 593 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~---~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-----~h 593 (969)
.+.+|.. .|.+++|+| +++|++++.|+.|++||+.+++.+..+ .|
T Consensus 198 -------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 198 -------------------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252 (615)
T ss_dssp -------------------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred -------------------------eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence 4556888 999999998 478999999999999999999999988 89
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-----CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-----EMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-----~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
...|.+++|+ ++.+|++++.|+.|++||+.+++.+...... ..+.++.|. ++.++++++.+|.|++||+.++
T Consensus 253 ~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 253 QGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp CSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE
T ss_pred CCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC
Confidence 9999999999 7899999999999999999998877655544 678888886 8899999999999999999876
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
+.... ...|...|.+++| |+ +++++.|+.|++|+.. .+. ..|...|.+++| +++.+|++++
T Consensus 330 ~~~~~--------~~~~~~~v~~~~~-~~----l~~~~~dg~i~~w~~~----~~~-~~~~~~v~~~~~-~~~~~l~~~~ 390 (615)
T 1pgu_A 330 EVLKT--------ISGHNKGITALTV-NP----LISGSYDGRIMEWSSS----SMH-QDHSNLIVSLDN-SKAQEYSSIS 390 (615)
T ss_dssp EEEEE--------ECCCSSCEEEEET-TT----TEEEETTSCEEETTTT----EEE-CCCCSCEEEEEC-CSTTCCEEEE
T ss_pred cEEEE--------EeCCCCCEEEEEe-cC----cEEECCCCeEEEEEch----hhc-CcccCceEEEEE-CCCcEEEEEe
Confidence 54332 2578899999999 85 9999999999999987 233 667888999999 6688999999
Q ss_pred CCCcEEEEEcCCCCccC----------------------------CCceeEEecccCCceeeeeeEEeecCCCcccC-C-
Q 002086 749 EDSQVYVWKREEHRNAS----------------------------TGKRAIITTRNHEHFQCKDVSVAIPWPGMVKG-E- 798 (969)
Q Consensus 749 ~Dg~I~IWdl~t~~~~~----------------------------t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G-~- 798 (969)
.|+.|++|++.+.+... .++.+.... ......+..+. -..++.+ .
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~l~~~~~~ 465 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS----QNYVAVGLEE 465 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC----SSEEEEEETT
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc----CCEEEEeecC
Confidence 99999999987643211 111111111 11222222222 1222222 3
Q ss_pred CCCccEEEccccc-------ccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCC-CCCCccccccCC
Q 002086 799 PPPTPVQTKKHAK-------RISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSP-PEEELSLISHDP 866 (969)
Q Consensus 799 ~~~~~v~~~~~~~-------~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~-pee~l~~is~hP 866 (969)
+....+|...... ..........++|++.++++++.++.+..|...++.....+.. |...+.++.++|
T Consensus 466 d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred CCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcC
Confidence 5666666554322 1233445678899999999999999999999988888888777 999999999999
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-35 Score=338.32 Aligned_cols=247 Identities=23% Similarity=0.410 Sum_probs=217.2
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
++.+++++|.+.|++++|+|++++|++|+.|++|+|||+.+++.+.
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~---------------------------------- 186 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR---------------------------------- 186 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE----------------------------------
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----------------------------------
Confidence 3445688999999999999999999999999999999998765543
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
.+.+|...|.+++|+| +++|++|+.|++|++||+.++.++..+ +|...|.+
T Consensus 187 ---------------------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 187 ---------------------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239 (410)
T ss_dssp ---------------------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ---------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence 4567999999999999 789999999999999999999998887 79999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccC--------------------CCEEEEEeCCC
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPD--------------------GQNALIGSHKG 658 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspd--------------------g~~Lasgs~dg 658 (969)
+.|+| ++.+|++|+.|++|++||+.++.... +..|...|.+++|+|+ +.+|++|+.|+
T Consensus 240 ~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 240 VRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 99999 99999999999999999999887654 5577889999999996 67899999999
Q ss_pred cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe
Q 002086 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 659 ~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs 738 (969)
.|++||+.++...... .+|...|.+++|+|++ .+|++++.|+.|++||............|...|++++|+
T Consensus 319 ~i~iwd~~~~~~~~~~--------~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 389 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTL--------VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389 (410)
T ss_dssp EEEEEETTTTEEEEEE--------ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCceEEEE--------ECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence 9999999988765432 5688999999999988 799999999999999976654444445567789999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcC
Q 002086 739 ADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 739 pdg~~LaSgs~Dg~I~IWdl~ 759 (969)
|++.+|++|+.||+|+||+++
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC--
T ss_pred CCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999863
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-34 Score=326.04 Aligned_cols=289 Identities=20% Similarity=0.345 Sum_probs=238.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
++...+|++|.+.|++++|+||+++|+||+.||+|+|||+.+++.+..+..+...+..+.+.+........+..
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------ 118 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD------ 118 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT------
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC------
Confidence 45677899999999999999999999999999999999999999888777766666555555443222111110
Q ss_pred cccCCCCCCCCcccccceeeecCC-----CceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSE-----KPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~-----k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
....+|.... .....+.+|.+.|.++.|+++..|++++.|++|++||+.+++++..+ +|.
T Consensus 119 --------------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 119 --------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp --------------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred --------------CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 0112233221 23456889999999999999778999999999999999999998887 799
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
..|.+++|+| ++.+|++|+.|++|++||++++.... +..|...|.+++|+|++++|++|+.||+|++||++..+....
T Consensus 185 ~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 185 GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 9999999999 89999999999999999999887654 556788999999999999999999999999999998765433
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
.. ...+...|++++|+|++ .+|++|+.|+.|++||............|...|.+++|+|+|.+|++|+.||.|
T Consensus 264 ~~------~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 264 YS------HDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp EC------CTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred Ec------cCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 21 13345679999999998 899999999999999987665555556678899999999999999999999999
Q ss_pred EEEE
Q 002086 754 YVWK 757 (969)
Q Consensus 754 ~IWd 757 (969)
+|||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8e-35 Score=336.07 Aligned_cols=248 Identities=22% Similarity=0.409 Sum_probs=222.3
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
...|.+|.++|++++|+|++.+|++|+.||+|+|||+.+++...
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~------------------------------------ 144 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER------------------------------------ 144 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE------------------------------------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------------
Confidence 45688999999999999999999999999999999998754432
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
.+.+|.+.|.+++|++ +.+|++|+.|++|+|||+.+++++..+ +|...|.+++
T Consensus 145 -------------------------~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~ 199 (410)
T 1vyh_C 145 -------------------------TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199 (410)
T ss_dssp -------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred -------------------------EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE
Confidence 6778999999999999 889999999999999999999998877 8999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
|+| ++++|++|+.|++|++||+.++..+. +..|...|.++.|+|++.+|++|+.|+.|++||+.+++.....
T Consensus 200 ~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~------ 272 (410)
T 1vyh_C 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL------ 272 (410)
T ss_dssp ECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------
T ss_pred EeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe------
Confidence 999 89999999999999999999887654 5667889999999999999999999999999999988754332
Q ss_pred cccCCCCCeEEEEEcCCC-------------------CceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC
Q 002086 681 KKKSSTRKITGFQFSPSN-------------------PSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~-------------------~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg 741 (969)
..|...|.+++|+|++ +.+|++|+.|+.|++||............|...|.+++|+|+|
T Consensus 273 --~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 273 --REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp --CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred --cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC
Confidence 5788999999999963 3589999999999999988776666666778889999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 002086 742 KYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++|++|+.||.|+|||+.++
T Consensus 351 ~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 351 KFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp SCEEEEETTTEEEEECCTTS
T ss_pred CEEEEEeCCCeEEEEECCCC
Confidence 99999999999999999874
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=326.61 Aligned_cols=247 Identities=20% Similarity=0.281 Sum_probs=207.8
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|...|++++|+|++ .|++|+.||+|+|||+.+++.+...
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~--------------------------------------- 119 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVS--------------------------------------- 119 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEE---------------------------------------
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEe---------------------------------------
Confidence 478899999999985 6889999999999999876543321
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~ 606 (969)
...+.+|.+.|++|+|+| +++|++|+.|++|+|||+.+++++..+ +|...|++++|++..
T Consensus 120 ------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 120 ------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp ------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred ------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 114568999999999999 899999999999999999999999888 799999999999944
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEec---CCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWTD---LHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
..+|++|+.|++|++||+++++....+. +...+.+++|+|+ +++|++|+.||.|+|||+++++.....
T Consensus 182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-------- 253 (344)
T 4gqb_B 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-------- 253 (344)
T ss_dssp TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------
T ss_pred CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------
Confidence 4689999999999999999987665443 4457999999995 568899999999999999988764332
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK-YIISASEDSQVYVWKREEH 761 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~-~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+|...|++++|+|++..+|++++.|++|+|||..... .+....|...|++++|+|+++ +|++|+.|++|++|++.+.
T Consensus 254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 67899999999999987789999999999999976543 344566788999999999986 6779999999999999874
Q ss_pred C
Q 002086 762 R 762 (969)
Q Consensus 762 ~ 762 (969)
.
T Consensus 333 ~ 333 (344)
T 4gqb_B 333 P 333 (344)
T ss_dssp -
T ss_pred C
Confidence 3
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=320.58 Aligned_cols=251 Identities=24% Similarity=0.390 Sum_probs=218.6
Q ss_pred eeeeEecccccCEEEEEEeCC----CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 442 HLCQEIQAHEGSIWTIKFSLD----ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpD----g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
.+.+.+++|.+.|++|+|+|+ +.+|+||+.|++|+||++.+++...
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~------------------------------ 72 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL------------------------------ 72 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE------------------------------
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee------------------------------
Confidence 345677899999999999984 6799999999999999987654321
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCC
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHND 595 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~ 595 (969)
...+.+|...|.+++|++ +.++++++.|++|++||+.+++++..+ .|..
T Consensus 73 -----------------------------~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~ 123 (321)
T 3ow8_A 73 -----------------------------QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV 123 (321)
T ss_dssp -----------------------------EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred -----------------------------eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc
Confidence 125778999999999999 789999999999999999999998877 6788
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
.+.+++|+| ++.+|++++.||.|++||+.+++.. .+..+...|.+++|+|++++|++|+.||.|++||+.+++.....
T Consensus 124 ~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 124 DAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp CCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 999999999 9999999999999999999987655 45566788999999999999999999999999999988765432
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
..|...|.+++|+|++ .+|++++.|+.|++||............|...|.+++|+|++.+|++++.|+.|+
T Consensus 203 --------~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 203 --------EGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp --------CCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --------cccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 5788899999999988 7999999999999999877665555666788899999999999999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
|||+.++
T Consensus 274 iwd~~~~ 280 (321)
T 3ow8_A 274 VWDVGTR 280 (321)
T ss_dssp EEETTTT
T ss_pred EEeCCCC
Confidence 9999873
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-34 Score=329.85 Aligned_cols=304 Identities=20% Similarity=0.347 Sum_probs=244.1
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++...+.+.++|++|.+.|++++|+|++++|+||+.|++|+|||+.+++.+..+..+...+..+.+.+........+...
T Consensus 51 ~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred cccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 34456678889999999999999999999999999999999999999999888888777776666655543332222111
Q ss_pred CCCcccccCCCCCCCCcccccceeeec--------CCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSL--------SEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK 585 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~ 585 (969)
. ..+|.+ .......+.+|.+.|.++.|.| +..|++|+.|++|++||+.++
T Consensus 131 ~--------------------v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 131 A--------------------CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp C--------------------CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC
T ss_pred c--------------------EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC
Confidence 1 111211 1123346789999999999998 468999999999999999999
Q ss_pred cEEEEe------ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-c-eEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 586 SCLKLF------AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-R-LVVDWTDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 586 ~~i~~~------~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
+++..+ +|...|.+++|++.++++|++|+.|++|++||++. + .+..+..|...|.+++|+|++++|++|+.|
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence 998876 58899999999886889999999999999999974 3 345567788999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe----ecCCCCeE
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG----FRNTSSQI 733 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~----~~~~~~V~ 733 (969)
|+|++||+++++......... .....+...|++++|+|++ .+|++|+.|+.|++||.......... ..|...|.
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCC-SSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCC
T ss_pred CeEEEEECCCCcEEEEecccc-cccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceE
Confidence 999999999987655432211 1112234468999999998 89999999999999997655444333 45778899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 734 SAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 734 sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+++|+|||.+|++|+.||+|+||++...
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999999874
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=318.98 Aligned_cols=243 Identities=17% Similarity=0.342 Sum_probs=218.4
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.+|...|.+++|++++.+|++|+.|++|+|||+.+++.+.
T Consensus 75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~-------------------------------------- 116 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK-------------------------------------- 116 (321)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------------
T ss_pred eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE--------------------------------------
Confidence 477999999999999999999999999999999999877654
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fs 603 (969)
.+..|...+.+++|+| +++|++|+.|+.|++||+.+++....+ .|...|.+++|+
T Consensus 117 -----------------------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s 173 (321)
T 3ow8_A 117 -----------------------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173 (321)
T ss_dssp -----------------------EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC
T ss_pred -----------------------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC
Confidence 3455777788999999 899999999999999999999988776 688899999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
| ++.+|++|+.||.|++||+++++.+.. ..|...|.+++|+|++++|++|+.|+.|++||++..+.... .
T Consensus 174 p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--------~ 244 (321)
T 3ow8_A 174 P-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--------L 244 (321)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--------E
T ss_pred C-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--------E
Confidence 9 999999999999999999999887654 45778899999999999999999999999999998775433 2
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+|...|.+++|+|++ .+|++++.|++|++||..+.........|...|.+++|+|++++|++++.||.|+|||+.
T Consensus 245 ~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 6788999999999988 799999999999999988777666666788899999999999999999999999999973
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-33 Score=319.78 Aligned_cols=290 Identities=22% Similarity=0.328 Sum_probs=235.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+..++|++|.+.|++|+|+|++++||||+.||+|+|||..+++....+..+...+..+.+.+........+....
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~---- 129 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK---- 129 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSE----
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCC----
Confidence 3567889999999999999999999999999999999999998887776666555555555544332222111100
Q ss_pred cccCCCCCCCCcccccceeeec-------CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-
Q 002086 521 KKKKGKHSSPDYVHVPETVFSL-------SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF- 591 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~-------~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~- 591 (969)
..+|.. .......+.+|...|.++.|++ +..|++++.|++|++||+.+++++..+
T Consensus 130 ----------------i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 130 ----------------CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp ----------------EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ----------------EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 011111 1123456788999999999999 789999999999999999999998887
Q ss_pred ecCCCeEEEEEecC-CCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPM-DDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
+|...|.+++|+|. ++++|++|+.||+|++||+++++.+. +..|...|.+++|+|++.+|++|+.|++|++||++..+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 79999999999883 35799999999999999999988665 45677899999999999999999999999999999876
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
...... ...+...+.+++|+|++ .+|++++.|+.|++||..+.........|...|.+++|+|||++|++|+.
T Consensus 274 ~~~~~~------~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 274 EVAIYS------KESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp EEEEEC------CTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEEc------CCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 543221 12344578999999988 79999999999999998766555555677889999999999999999999
Q ss_pred CCcEEEEE
Q 002086 750 DSQVYVWK 757 (969)
Q Consensus 750 Dg~I~IWd 757 (969)
||+|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.4e-34 Score=315.49 Aligned_cols=303 Identities=18% Similarity=0.273 Sum_probs=244.9
Q ss_pred cceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.+.+..+|.+|.+.|++|+|+|++ ++|+||+.|++|++|++......
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-------------------------------- 53 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-------------------------------- 53 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--------------------------------
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--------------------------------
Confidence 356778899999999999999965 89999999999999998642110
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
...++..+.+|...|.+++|++ +.+|++|+.|++|+|||+.+++++..+ +|...
T Consensus 54 ------------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~ 109 (319)
T 3frx_A 54 ------------------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109 (319)
T ss_dssp ------------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred ------------------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc
Confidence 0123447889999999999999 899999999999999999999998877 89999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccC------CCEEEEEeCCCcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPD------GQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspd------g~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
|.+++|+| ++.+|++|+.|++|++||++...+..+..|...|.++.|.|. +..|++++.|+.|++||+...+.
T Consensus 110 v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 110 VMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp EEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 99999999 999999999999999999998888888899999999999995 44899999999999999998765
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
... ..+|...|.+++|+|++ .+|++++.|+.|++||........... ....|.+++|+|++.+|++++.+
T Consensus 189 ~~~--------~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 189 EAD--------FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT 258 (319)
T ss_dssp EEE--------ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT
T ss_pred hee--------ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC
Confidence 432 26789999999999988 799999999999999987765544433 45679999999999999998855
Q ss_pred CcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcc
Q 002086 751 SQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSP 830 (969)
Q Consensus 751 g~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~ 830 (969)
.|++|+++.. ............+ .+.........++||++.+++
T Consensus 259 -~i~v~~~~~~------~~~~~~~~~~~~~-----------------------------~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 259 -GIKVFSLDPQ------YLVDDLRPEFAGY-----------------------------SKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp -EEEEEEETTE------EEEEEECCCCTTC-----------------------------CGGGCCCEEEEEECTTSSEEE
T ss_pred -CcEEEEeCcC------eeeeccCcccccc-----------------------------ccCcCcceeEEEECCCCCEEE
Confidence 5999999862 1111111000000 000111223467899999999
Q ss_pred ccCCCCccccCCCCC
Q 002086 831 AGHSRRLLPPLPKKT 845 (969)
Q Consensus 831 ~~~~~~~L~~~~~~s 845 (969)
+++.++.+..|...+
T Consensus 303 sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 303 AGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEETTSCEEEEEEEE
T ss_pred EeecCceEEEEEEee
Confidence 999999999996543
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3e-33 Score=311.39 Aligned_cols=292 Identities=20% Similarity=0.319 Sum_probs=235.5
Q ss_pred hhhccCCCcceeeeeccc-ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 331 FEKSVGHSPVVKELMRRE-NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~-~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
...+.||...|.+|++.. ++..+++++.|..+..|.. .....
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~-----~~~~~-------------------------------- 52 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-----TGDDQ-------------------------------- 52 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEE-----EEETT--------------------------------
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecC-----CCCCc--------------------------------
Confidence 345689999999999754 5577888888987766641 10000
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
.....+..|++|...|++++|+|+|++|++|+.|++|+|||+.+++.+.
T Consensus 53 -----------------------------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~-- 101 (319)
T 3frx_A 53 -----------------------------KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-- 101 (319)
T ss_dssp -----------------------------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--
T ss_pred -----------------------------cccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE--
Confidence 0011245678999999999999999999999999999999998876644
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL 568 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L 568 (969)
.+.+|...|.+++|++ +.+|
T Consensus 102 -----------------------------------------------------------~~~~h~~~v~~~~~~~~~~~l 122 (319)
T 3frx_A 102 -----------------------------------------------------------RFVGHKSDVMSVDIDKKASMI 122 (319)
T ss_dssp -----------------------------------------------------------EEECCSSCEEEEEECTTSCEE
T ss_pred -----------------------------------------------------------EEccCCCcEEEEEEcCCCCEE
Confidence 5678999999999999 7899
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC-----CCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEE
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM-----DDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAA 642 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~-----~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv 642 (969)
++|+.|++|++||+.........+|...|.++.|.|. ++.+|++++.|+.|++||+++.+.. .+..|...|.++
T Consensus 123 ~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 202 (319)
T 3frx_A 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202 (319)
T ss_dssp EEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEE
Confidence 9999999999999986555555589999999999983 2348999999999999999988755 456788999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
+|+|++++|++|+.||.|+|||+.+.+..... .+...|.+++|+|++ .++++++ +..|++|+.......
T Consensus 203 ~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~sp~~-~~la~~~-~~~i~v~~~~~~~~~ 271 (319)
T 3frx_A 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---------SAQDEVFSLAFSPNR-YWLAAAT-ATGIKVFSLDPQYLV 271 (319)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTTEEEEEE---------ECCSCEEEEEECSSS-SEEEEEE-TTEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---------cCCCcEEEEEEcCCC-CEEEEEc-CCCcEEEEeCcCeee
Confidence 99999999999999999999999988765432 134679999999987 5666655 556999996653322
Q ss_pred EEe--------ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 723 FRG--------FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 ~~~--------~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
... ..+...+.+++|+|||++|++|+.||.|+|||+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 221 12345688999999999999999999999999976
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-33 Score=320.88 Aligned_cols=310 Identities=17% Similarity=0.251 Sum_probs=231.4
Q ss_pred eEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeec
Q 002086 315 NKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVK 394 (969)
Q Consensus 315 ~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~ 394 (969)
...|++..... .+|...|++|++..++..+++++.+. ...|.+.++.+.....
T Consensus 28 ~~~w~~p~~~p---------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~~v~~~~~~~~----------------- 80 (357)
T 4g56_B 28 GSAWGRPVTAP---------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGGSIWVFKDPEG----------------- 80 (357)
T ss_dssp ---------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCEEEEEESSCC------------------
T ss_pred ccccCCCCCCc---------ccccCCEEEEEECCCCCEEEEEcCCC-CccccCeEEEEECCCC-----------------
Confidence 35787765543 57999999999999999999987775 3455433211110000
Q ss_pred CCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCc
Q 002086 395 GDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRV 474 (969)
Q Consensus 395 gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~Dgt 474 (969)
. ....+.....+|.+.|++++|+|+++ +++++.||+
T Consensus 81 -~------------------------------------------~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 81 -A------------------------------------------PNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp ---------------------------------------------CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred -C------------------------------------------cceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 0 00011223457999999999999986 556788999
Q ss_pred EEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC
Q 002086 475 IHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL 554 (969)
Q Consensus 475 VrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~ 554 (969)
|+|||+.+++..... .....+|.
T Consensus 117 v~lWd~~~~~~~~~~---------------------------------------------------------~~~~~~h~ 139 (357)
T 4g56_B 117 VELWEILEKESLLVN---------------------------------------------------------KFAKYEHD 139 (357)
T ss_dssp EEEC--------CCC---------------------------------------------------------CEEECCCS
T ss_pred EEEeeccccceeEEE---------------------------------------------------------eeccCCCC
Confidence 999999876543210 11456799
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
+.|++++|+| +++|++|+.|++|++||+.+++++..+ +|...|++++|++....+|++++.||+|++||+++++....
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 9999999999 899999999999999999999999887 79999999999994446899999999999999998875543
Q ss_pred ---ecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 633 ---TDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 633 ---~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
..+...+.+++|+|+ +.+|++|+.|+.|++||+++++..... ..|...|++++|+|++..+|++++.|
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--------~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--------AVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--------CCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE--------eccceeEEEEEEcCCCCCEEEEEeCC
Confidence 335577999999997 468889999999999999988754332 57888999999999987789999999
Q ss_pred CcEEEEeCCcceEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC
Q 002086 709 SRIRILDGLDIVHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++|+|||...... +....|...|++++|+| |+.+|++|+.||+|++|++.+.
T Consensus 292 ~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 292 CTVAVLDADFSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SCEEEECTTSCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEECCCCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999775433 34456888999999998 8999999999999999999763
No 19
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.6e-34 Score=373.00 Aligned_cols=530 Identities=14% Similarity=0.121 Sum_probs=364.4
Q ss_pred cCCcEEEEeeCCCCcEEE----------EeeccCCCcee---------EEEecCCCceeeeeehhhccCCCcceeeeecc
Q 002086 287 RLGAFFLIKNLDTGKEFI----------VNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRR 347 (969)
Q Consensus 287 ~~~~~~~i~~ld~g~~~v----------v~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~ 347 (969)
+.++.++|||+.+|+.+. ...++.||.++ ++||+.+|+.+ ..+.+|...|.++.+.
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~ 708 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV-----HTYDEHSEQVNCCHFT 708 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE-----EEEcCCCCcEEEEEEe
Confidence 467889999988886643 23355665544 89999999874 4567999999999976
Q ss_pred c--ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCccc-----chHHH--------
Q 002086 348 E--NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLG-----DQREQ-------- 412 (969)
Q Consensus 348 ~--~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~-----~~~~~-------- 412 (969)
. +...+++++.|..+..|.... ......+..+.+....+.|+++...+.....-+ +....
T Consensus 709 ~~~~~~~l~sg~~d~~v~vwd~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 783 (1249)
T 3sfz_A 709 NKSNHLLLATGSNDFFLKLWDLNQ-----KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783 (1249)
T ss_dssp SSSSCCEEEEEETTSCEEEEETTS-----SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred cCCCceEEEEEeCCCeEEEEECCC-----cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence 5 555688888888887776432 222222333334445555555543322210000 00000
Q ss_pred -------HH-Hh---------hccccCcceEEEccCCCcccccccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCc
Q 002086 413 -------KE-QK---------QNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRV 474 (969)
Q Consensus 413 -------~~-~~---------~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~Dgt 474 (969)
.. .. ....++...+........++++........+. +|.+.|.+++|+|+++++++++.|+.
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 00 00 00011111222222223345666666666665 89999999999999999999999999
Q ss_pred EEEEecccceEEEeecCCccCcccccccCCCCCccCC---CCCCCCCcccccCCCCCCCC------cccc----------
Q 002086 475 IHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLD---GSSPNPPPEKKKKGKHSSPD------YVHV---------- 535 (969)
Q Consensus 475 VrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~------~~~~---------- 535 (969)
|++||+.++..+..+.++...+..+.+.+........ +....+.............. +...
T Consensus 864 v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1249)
T 3sfz_A 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI 943 (1249)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS
T ss_pred EEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCC
Confidence 9999999999999888888887777776654322221 11111111100000000000 0000
Q ss_pred -cceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEE
Q 002086 536 -PETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFIS 612 (969)
Q Consensus 536 -~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~s 612 (969)
....+.... ......+...|.+++|+| +.++++|+.||.|++||+.+++....+ +|...|++++|+| ++.+|++
T Consensus 944 ~~~~~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s 1020 (1249)
T 3sfz_A 944 RGLQLIAGKT--GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLIS 1020 (1249)
T ss_dssp SSEEEEEESS--CCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEE
T ss_pred cceEEEecCc--ceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEE
Confidence 000000000 111223456799999999 899999999999999999999988776 7999999999999 9999999
Q ss_pred EECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEE
Q 002086 613 GSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l 692 (969)
++.||.|++||+.++.......+...|.+++|+|++ .+++++.||.|++||+.+++..... ..|...|+++
T Consensus 1021 ~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~--------~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDF--------TCHQGTVLSC 1091 (1249)
T ss_dssp ECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEE--------ECCSSCCCCE
T ss_pred EcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEE--------cccCCcEEEE
Confidence 999999999999999998888899999999999965 6788999999999999988764332 5688899999
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEE
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAII 772 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~ 772 (969)
+|+|++ .++++++.|++|++||............|...|++++|+|+|++|++|+.||.|++||+.+++...+......
T Consensus 1092 ~~s~d~-~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~ 1170 (1249)
T 3sfz_A 1092 AISSDA-TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170 (1249)
T ss_dssp EECSSS-SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-
T ss_pred EECCCC-CEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc
Confidence 999998 7899999999999999765544444455778899999999999999999999999999998654432210000
Q ss_pred ecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCC
Q 002086 773 TTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVP 852 (969)
Q Consensus 773 ~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l 852 (969)
.. ............+++|++.++++++ +.+..|...++......
T Consensus 1171 ~~----------------------------------~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~ 1214 (1249)
T 3sfz_A 1171 EE----------------------------------GTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF 1214 (1249)
T ss_dssp ----------------------------------------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCC
T ss_pred cc----------------------------------cccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeee
Confidence 00 0000112233556899999988876 78999998888888887
Q ss_pred CCCCCCccccccCCCCCCccccC
Q 002086 853 SPPEEELSLISHDPGISESFTSN 875 (969)
Q Consensus 853 ~~pee~l~~is~hP~~~~~~~~s 875 (969)
..+...+.++.+.|...-+++.+
T Consensus 1215 ~~~~~~i~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1215 YTNGTNLKKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp CCSSCCCCCCEECSSSCCEEEEC
T ss_pred eccCCcccEEEECCCCCEEEEec
Confidence 78888888999888866555543
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=310.53 Aligned_cols=257 Identities=19% Similarity=0.321 Sum_probs=214.1
Q ss_pred cceeeeEeccccc-CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEG-SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~-~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.++++++|.+|.+ .|++|+|+|+|++||||+.|++|+|||+.++.....
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~------------------------------ 53 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK------------------------------ 53 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE------------------------------
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee------------------------------
Confidence 3567888999998 999999999999999999999999999887653321
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHN 594 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~ 594 (969)
.....+|...|.+++|+| +++|++|+.|++|+|||+..+. ++..+ +|.
T Consensus 54 ----------------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 54 ----------------------------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp ----------------------------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS
T ss_pred ----------------------------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC
Confidence 012357999999999999 8999999999999999998774 44555 799
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
..|.+++|+| ++++|++|+.|++|++||+..+. +..+..|...|.+++|+|++++|++|+.|+.|++||+.....
T Consensus 106 ~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~ 184 (345)
T 3fm0_A 106 NEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184 (345)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE
T ss_pred CCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE
Confidence 9999999999 99999999999999999998753 234556788999999999999999999999999999987754
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---------------eEEEEee-cCCCCeEE
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---------------VHKFRGF-RNTSSQIS 734 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---------------~~~~~~~-~~~~~V~s 734 (969)
.... ...+|...|.+++|+|++ .+|++++.|++|+||+.... ....... .|...|.+
T Consensus 185 ~~~~------~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 257 (345)
T 3fm0_A 185 VCCA------TLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD 257 (345)
T ss_dssp EEEE------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEE
T ss_pred EEEE------EecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEE
Confidence 3222 226789999999999988 89999999999999984210 1111111 26678999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
++|+|++.+|++++.|+.|++|++....
T Consensus 258 v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 258 IAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 9999999999999999999999998643
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5e-33 Score=307.27 Aligned_cols=253 Identities=21% Similarity=0.311 Sum_probs=211.3
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++.+...+..+.+|...|.+++|+|++++|++|+.|++|+|||+.+++.+.
T Consensus 41 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~----------------------------- 91 (304)
T 2ynn_A 41 NYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV----------------------------- 91 (304)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----------------------------
T ss_pred ECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE-----------------------------
Confidence 333444556678899999999999999999999999999999998776543
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE-EEEe-ec
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC-LKLF-AH 593 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~-i~~~-~h 593 (969)
.+.+|.+.|.+++|+| +.+|++|+.|++|++||+.++.. ...+ +|
T Consensus 92 --------------------------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 92 --------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp --------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred --------------------------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 5678999999999999 78999999999999999998854 4444 89
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EE-ecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEcCCCc
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DW-TDLHEMVTAACYTP--DGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~-~~~~~~V~sv~fsp--dg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
...|.+++|+|.++.+|++|+.|++|++||+...... .. ..+...+..+.|+| ++.+|++|+.|++|++||+++++
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 9999999999966789999999999999999876432 22 34557899999987 67899999999999999999887
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC--EEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK--YIISA 747 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~--~LaSg 747 (969)
..... .+|...|.+++|+|++ .+|++++.|++|++||..+.........+...+.+++|+|++. +|++|
T Consensus 220 ~~~~~--------~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 220 CVATL--------EGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp EEEEE--------ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEE
T ss_pred cceee--------CCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEe
Confidence 65432 6788999999999988 7999999999999999877655555556677899999999875 57777
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.| .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 654 578888865
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.6e-33 Score=311.51 Aligned_cols=295 Identities=16% Similarity=0.308 Sum_probs=231.8
Q ss_pred ehhhccCCCcceeeeec-----cc-ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCC
Q 002086 330 EFEKSVGHSPVVKELMR-----RE-NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPN 403 (969)
Q Consensus 330 E~~~~~GHs~~V~~l~~-----~~-~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~ 403 (969)
....+.||...|.++.+ .. +...+++++.|..+..|.. ......
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~-----~~~~~~------------------------- 62 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL-----YEEEQN------------------------- 62 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEE-----CSSCCS-------------------------
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEEC-----CcCCcc-------------------------
Confidence 34567899999999986 33 6677888888887766641 111000
Q ss_pred CcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccc
Q 002086 404 PLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC 483 (969)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg 483 (969)
. ........+.+|.+.|++++|+|++.+|++|+.|++|+|||+.++
T Consensus 63 ----------------~------------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~ 108 (343)
T 2xzm_R 63 ----------------G------------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG 108 (343)
T ss_dssp ----------------S------------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS
T ss_pred ----------------c------------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 0 001223457899999999999999999999999999999999876
Q ss_pred eEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEec
Q 002086 484 EVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS 563 (969)
Q Consensus 484 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs 563 (969)
+.+. .+.+|...|.+++|+
T Consensus 109 ~~~~-------------------------------------------------------------~~~~h~~~v~~v~~s 127 (343)
T 2xzm_R 109 TTYK-------------------------------------------------------------RFVGHQSEVYSVAFS 127 (343)
T ss_dssp CEEE-------------------------------------------------------------EEECCCSCEEEEEEC
T ss_pred cEEE-------------------------------------------------------------EEcCCCCcEEEEEEC
Confidence 5543 567899999999999
Q ss_pred C-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCC----------CEEEEEECCCeEEEEeCCCceE
Q 002086 564 R-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDD----------DYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 564 ~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~----------~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
| +.+|++|+.|++|++||+......... .|...|.+++|+| ++ .+|++++.|+.|++||......
T Consensus 128 p~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 206 (343)
T 2xzm_R 128 PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR 206 (343)
T ss_dssp SSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEE
T ss_pred CCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCcee
Confidence 9 889999999999999999854433333 6889999999999 54 7999999999999999766666
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 630 VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 630 ~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
..+..|...|.+++|+|+|++|++|+.||.|++||+......... ..+...|.+++|+|++ .+ ++++.|+
T Consensus 207 ~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~v~~sp~~-~~-la~~~d~ 276 (343)
T 2xzm_R 207 YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE--------FDAGSTINQIAFNPKL-QW-VAVGTDQ 276 (343)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE--------EECSSCEEEEEECSSS-CE-EEEEESS
T ss_pred EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee--------ecCCCcEEEEEECCCC-CE-EEEECCC
Confidence 677788899999999999999999999999999999543321110 1234569999999987 44 4566788
Q ss_pred cEEEEeCCcce--E--EEEe---------ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 710 RIRILDGLDIV--H--KFRG---------FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 710 ~I~IwD~~~~~--~--~~~~---------~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.|++|+..... . .+.. ..+...|.+++|+|+|++|++|+.||.|++|++++
T Consensus 277 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99999965422 1 2221 13566799999999999999999999999999876
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.5e-33 Score=310.23 Aligned_cols=308 Identities=20% Similarity=0.302 Sum_probs=235.5
Q ss_pred ceeeeEecccccCEEEEEE-----eC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 441 LHLCQEIQAHEGSIWTIKF-----SL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~f-----Sp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+.+..+|++|.+.|++|+| ++ |+++||||+.|++|+|||+.+.+...
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------------- 63 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------------------- 63 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------------
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------------
Confidence 4567789999999999999 77 99999999999999999987532100
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-e
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-A 592 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~ 592 (969)
....+...+.+|...|.+++|++ +.+|++|+.|++|++||+.+++++..+ +
T Consensus 64 ---------------------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 116 (343)
T 2xzm_R 64 ---------------------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG 116 (343)
T ss_dssp ---------------------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC
T ss_pred ---------------------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 00123346889999999999999 789999999999999999999988877 7
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe---cCCCCEEEEEEccCC----------CEEEEEeCCCc
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT---DLHEMVTAACYTPDG----------QNALIGSHKGS 659 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~---~~~~~V~sv~fspdg----------~~Lasgs~dg~ 659 (969)
|...|.+++|+| ++.+|++++.|++|++||+......... .|...|.+++|+|++ .+|++++.||.
T Consensus 117 h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 195 (343)
T 2xzm_R 117 HQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195 (343)
T ss_dssp CCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred CCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence 999999999999 9999999999999999999866555444 567889999999987 79999999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
|++||.. ..... ....|...|.+++|+|++ .+|++++.|+.|++||............+...|.+++|+|
T Consensus 196 i~iwd~~-~~~~~--------~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp 265 (343)
T 2xzm_R 196 LKVWNTN-FQIRY--------TFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265 (343)
T ss_dssp EEEEETT-TEEEE--------EEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECS
T ss_pred EEEEcCC-CceeE--------EEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECC
Confidence 9999953 22221 125788999999999998 8999999999999999743222222223445699999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcc
Q 002086 740 DGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTS 819 (969)
Q Consensus 740 dg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~ 819 (969)
++.+|+++ .|+.|++|++.+.+... ..... .. . ... ....+........
T Consensus 266 ~~~~la~~-~d~~v~iw~~~~~~~~~----~~~~~-~~-~--------------~~~----------~~~~~~~~~~v~~ 314 (343)
T 2xzm_R 266 KLQWVAVG-TDQGVKIFNLMTQSKAP----VCTIE-AE-P--------------ITK----------AEGQKGKNPQCTS 314 (343)
T ss_dssp SSCEEEEE-ESSCEEEEESSSCCSCS----EEECC-CC-S--------------GGG----------BTTBCCSCCCEEE
T ss_pred CCCEEEEE-CCCCEEEEEeCCCCCCc----eEEee-cC-c--------------chh----------hhhhcCCCCceEE
Confidence 99888755 58889999998743221 00000 00 0 000 0000001112235
Q ss_pred cccCCCCCCccccCCCCccccCCCC
Q 002086 820 ATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 820 ~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
.+++|++.++++++.++.+..|...
T Consensus 315 ~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 315 LAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEECSSSCCEEEEETTSEEEEEEEE
T ss_pred EEECCCCCeEEEecCCceEEEEEEE
Confidence 6789999999999999999998653
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-33 Score=317.42 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=201.3
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeC------CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGE------DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~------DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
..+|++.|++|+|+|||++||||+. |+.|++|+..++....
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--------------------------------- 84 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--------------------------------- 84 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---------------------------------
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---------------------------------
Confidence 4579999999999999999999998 6677777766543211
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEE-----EeecCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK-----LFAHND 595 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~-----~~~h~~ 595 (969)
.......+|...|.+++|+|+..+++++.||+|+|||+.+++... ..+|..
T Consensus 85 ------------------------~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 85 ------------------------SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp ------------------------GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred ------------------------eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 111245679999999999997788899999999999999887653 237999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
.|++|+|+| ++.+|++|+.|+.|++||+.+++++.. ..|...|++++|++++. ++++++.||.|++||+++++....
T Consensus 141 ~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 141 IVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp CEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 999999999 999999999999999999999887654 55788999999999875 788999999999999998775433
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC-CEEEEEeCCCc
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG-KYIISASEDSQ 752 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~ 752 (969)
.. ...+...+++++|+|+++.+|++++.|+.|++||............+...|++++|+|++ ++|++|+.|++
T Consensus 220 ~~------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 220 ID------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp CC------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred ee------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 21 245677899999999987899999999999999987655555555677889999999987 68999999999
Q ss_pred EEEEEcCCC
Q 002086 753 VYVWKREEH 761 (969)
Q Consensus 753 I~IWdl~t~ 761 (969)
|+|||++++
T Consensus 294 i~iwd~~~~ 302 (357)
T 4g56_B 294 VAVLDADFS 302 (357)
T ss_dssp EEEECTTSC
T ss_pred EEEEECCCC
Confidence 999999873
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=306.07 Aligned_cols=305 Identities=17% Similarity=0.288 Sum_probs=235.3
Q ss_pred ehhhccCCCc-ceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccc
Q 002086 330 EFEKSVGHSP-VVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGD 408 (969)
Q Consensus 330 E~~~~~GHs~-~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~ 408 (969)
.+..+.||.. .|.++++..++..+++++.|..+..|.. ....
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~-----~~~~-------------------------------- 49 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGT-----EGDS-------------------------------- 49 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEE-----ETTE--------------------------------
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEc-----CCCc--------------------------------
Confidence 3556678988 8999998888888888888887766531 1000
Q ss_pred hHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe
Q 002086 409 QREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM 488 (969)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~ 488 (969)
++ .....+.+|.+.|++++|+|+|++||+|+.|++|+|||+..+...
T Consensus 50 ----------------~~---------------~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~-- 96 (345)
T 3fm0_A 50 ----------------WI---------------CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE-- 96 (345)
T ss_dssp ----------------EE---------------EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE--
T ss_pred ----------------ce---------------eeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE--
Confidence 00 000113579999999999999999999999999999998754321
Q ss_pred ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE
Q 002086 489 SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL 567 (969)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~ 567 (969)
.+..+.+|...|.+++|+| +++
T Consensus 97 ---------------------------------------------------------~~~~~~~h~~~v~~v~~sp~~~~ 119 (345)
T 3fm0_A 97 ---------------------------------------------------------CVTTLEGHENEVKSVAWAPSGNL 119 (345)
T ss_dssp ---------------------------------------------------------EEEEECCCSSCEEEEEECTTSSE
T ss_pred ---------------------------------------------------------EEEEccCCCCCceEEEEeCCCCE
Confidence 1236778999999999999 899
Q ss_pred EEEEeCCCcEEEEECCCCc---EEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE---EEEecCCCCEE
Q 002086 568 LLSSSMDKTVRLWDMETKS---CLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV---VDWTDLHEMVT 640 (969)
Q Consensus 568 L~Sgs~DgtV~IWDl~t~~---~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~~~~~~V~ 640 (969)
|++|+.|++|++||+.++. ++..+ .|...|.+++|+| ++.+|++++.|++|++||+..+.. ..+..|...|+
T Consensus 120 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE
Confidence 9999999999999998764 34444 7999999999999 899999999999999999988753 35667889999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-------eee-ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN-------QVD-FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~-------~~~-~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
+++|+|+|++|++|+.|++|+||+.......... ... +......|...|.+++|+|++ ..|++++.|+.|+
T Consensus 199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~ 277 (345)
T 3fm0_A 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIR 277 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEE
Confidence 9999999999999999999999997432211000 000 111113478899999999988 7899999999999
Q ss_pred EEeCCcc------eEEEEe---ecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCCc
Q 002086 713 ILDGLDI------VHKFRG---FRNTSSQISAAFNADG-KYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 713 IwD~~~~------~~~~~~---~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
+|+.... ...+.. ..|...|.+++|+|++ .+||+|+.||+|+||++.+++.
T Consensus 278 vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9984321 111221 2567889999999988 5999999999999999998543
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.5e-33 Score=312.06 Aligned_cols=256 Identities=16% Similarity=0.251 Sum_probs=204.3
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..|...|.+++|+|||++|++++ |+++++||.... .+......
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~----~~~~~~~~-------------------------------- 69 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW----LFKDPCAA-------------------------------- 69 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE----EESSGGGT--------------------------------
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceee----eecccccc--------------------------------
Confidence 35788899999999999999988 889999984321 11100000
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEE-----eecCCCeEEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKL-----FAHNDYVTCIQF 602 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~-----~~h~~~V~sv~f 602 (969)
...........|...|.+++|++++.|++|+.||+|+|||+.+++++.. .+|...|++|+|
T Consensus 70 --------------~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~ 135 (344)
T 4gqb_B 70 --------------PNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV 135 (344)
T ss_dssp --------------TCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE
T ss_pred --------------CCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE
Confidence 0000111334577889999999988999999999999999999875433 279999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeecc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
+| ++.+|++|+.|++|++||+.+++++. +..|...|++++|++++. +|++++.|++|++||+++++......
T Consensus 136 sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----- 209 (344)
T 4gqb_B 136 LS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG----- 209 (344)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----
T ss_pred CC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee-----
Confidence 99 99999999999999999999988765 456889999999999985 78899999999999999887654322
Q ss_pred cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcC
Q 002086 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG-KYIISASEDSQVYVWKRE 759 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~ 759 (969)
...+...+.+++|+|++..+|++|+.|+.|+|||............|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus 210 -~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 210 -CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp -----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred -cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 134566799999999887889999999999999987655555555677889999999998 689999999999999998
Q ss_pred CC
Q 002086 760 EH 761 (969)
Q Consensus 760 t~ 761 (969)
++
T Consensus 289 ~~ 290 (344)
T 4gqb_B 289 LS 290 (344)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-32 Score=310.67 Aligned_cols=311 Identities=18% Similarity=0.308 Sum_probs=237.8
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+|.+.|++++|+|||++||+|+ |++++||++.+++.+..+..+...... .
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~--------------------~--------- 111 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD--------------------P--------- 111 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccc--------------------c---------
Confidence 6999999999999999999986 789999999999887755432110000 0
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~ 606 (969)
..........+...|.+++|+| +++|++|+.|++|+|||+.+++++..+ +|...|.+++|+| +
T Consensus 112 --------------~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~ 176 (393)
T 1erj_A 112 --------------ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-S 176 (393)
T ss_dssp -----------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-T
T ss_pred --------------ccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-C
Confidence 0000001223455799999999 899999999999999999999988777 7999999999999 9
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
+.+|++++.|++|++||+++++......+...+.+++|+| ++++|++|+.|+.|++||++++......... .....+|
T Consensus 177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~~h 255 (393)
T 1erj_A 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-NESGTGH 255 (393)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CCC
T ss_pred CCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-ccCCCCC
Confidence 9999999999999999999999888788888999999999 8999999999999999999988765432211 1112568
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
...|.+++|+|++ .+|++++.|+.|++||+... ........|...|.+++|+|++.+|++|+.|+.|
T Consensus 256 ~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 256 KDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred CCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE
Confidence 8999999999988 79999999999999996542 1223344567789999999999999999999999
Q ss_pred EEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccC
Q 002086 754 YVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGH 833 (969)
Q Consensus 754 ~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~ 833 (969)
++||+.+ ++.+..+..+...+.+..+.. ...++|++.++++++
T Consensus 335 ~iwd~~~------~~~~~~l~~h~~~v~~v~~~~-------------------------------~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 335 LFWDKKS------GNPLLMLQGHRNSVISVAVAN-------------------------------GSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEETTT------CCEEEEEECCSSCEEEEEECS-------------------------------SCTTCTTCEEEEEEE
T ss_pred EEEECCC------CeEEEEECCCCCCEEEEEecC-------------------------------CcCcCCCCCEEEEEC
Confidence 9999987 344444433333333222211 112456777788888
Q ss_pred CCCccccCCC
Q 002086 834 SRRLLPPLPK 843 (969)
Q Consensus 834 ~~~~L~~~~~ 843 (969)
.|+.+..|..
T Consensus 378 ~Dg~i~iW~~ 387 (393)
T 1erj_A 378 GDCKARIWKY 387 (393)
T ss_dssp TTSEEEEEEE
T ss_pred CCCcEEECcc
Confidence 8888888854
No 28
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.4e-32 Score=323.21 Aligned_cols=406 Identities=12% Similarity=0.142 Sum_probs=278.1
Q ss_pred CcEEEEeeCCCC----cE-----------EEEeeccC--CCcee---------EEEecCCC------ceeeeeehhhccC
Q 002086 289 GAFFLIKNLDTG----KE-----------FIVNEYSE--NGMWN---------KLSDLQTG------KQLTMEEFEKSVG 336 (969)
Q Consensus 289 ~~~~~i~~ld~g----~~-----------~vv~~~~~--dg~~~---------~lWd~~tg------k~l~~~E~~~~~G 336 (969)
+..++||+++++ +. +....+++ ||.++ +|||+.++ +.. .+..+.+
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~---~~~~~~~ 114 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN---VKSEFQV 114 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE---EEEEEEC
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccc---ccchhhc
Confidence 557888888776 32 33455666 77655 89999877 221 2456678
Q ss_pred CCcceeeeecccccccccCCCCc----ccccccccccccccccccccccceeeeeEEEeeecCCcc-ccCCCCcccchHH
Q 002086 337 HSPVVKELMRRENVNRINDSAGK----FSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKE-CINPNPLLGDQRE 411 (969)
Q Consensus 337 Hs~~V~~l~~~~~~~~~~t~s~d----~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~-~~~~~~l~~~~~~ 411 (969)
|...|.++++..+...+++++.+ ..+..|.. ......+.........+.|+++.. .+..
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--------- 178 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-------GNSLGEVSGHSQRINACHLKQSRPMRSMT--------- 178 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-------CCEEEECCSCSSCEEEEEECSSSSCEEEE---------
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-------CCcceeeecCCccEEEEEECCCCCcEEEE---------
Confidence 99999999988777777766555 44555541 111223333444555666666543 1111
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEeccccc---CEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEE
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEG---SIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMS 487 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~---~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~ 487 (969)
...++.+. +|++...+.+..+.+|.+ .|++++|+|+ +++|++++.|+.|++||+.+++.+.
T Consensus 179 ------~~~d~~v~---------vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 179 ------VGDDGSVV---------FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp ------EETTTEEE---------EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred ------EeCCCcEE---------EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 11222222 346777888899999999 9999999999 9999999999999999999999888
Q ss_pred ee-c---CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC-CCceeEeccC----CCCEE
Q 002086 488 MS-E---GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS-EKPFCSFIGH----LDDVL 558 (969)
Q Consensus 488 ~~-~---~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~k~~~~l~gH----~~~I~ 558 (969)
.+ . .+...+..+.+. ........+.. ....+|... .+.+..+..| ...+.
T Consensus 244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWL-DSQKFATVGAD--------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp ECCBTTBCCCSCEEEEEES-SSSEEEEEETT--------------------SEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred EecccccccCCceEEEEEc-CCCEEEEEcCC--------------------CcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 77 4 555555555554 22111111100 011233332 2333344433 34556
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-e---------------------------------cCCCeEEEEEec
Q 002086 559 DLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-A---------------------------------HNDYVTCIQFNP 604 (969)
Q Consensus 559 ~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~---------------------------------h~~~V~sv~fsp 604 (969)
++.|..+.++++++.|+.|++||+.+++.+..+ + |...|.+++| +
T Consensus 303 ~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~ 381 (615)
T 1pgu_A 303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-S 381 (615)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-C
T ss_pred EEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-C
Confidence 666654566666666666666666665555444 3 4455555555 2
Q ss_pred CCCCEEEEEECCCeEEEEeCC----------------------------------CceEEEEecCCCCEEEEEEccCCCE
Q 002086 605 MDDDYFISGSLDAKVRIWSIS----------------------------------DRLVVDWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~----------------------------------~~~~~~~~~~~~~V~sv~fspdg~~ 650 (969)
.+..|++++.|+.|++||+. +++.+....+...+.+++|+ +++
T Consensus 382 -~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 458 (615)
T 1pgu_A 382 -KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNY 458 (615)
T ss_dssp -STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSE
T ss_pred -CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCE
Confidence 36677777888887777764 23344444567788999998 889
Q ss_pred EEEEeC-CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec-C
Q 002086 651 ALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR-N 728 (969)
Q Consensus 651 Lasgs~-dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~-~ 728 (969)
|++++. ++.|++||+.+++... .....|...|++++|+|++ .+|++++.|+.|++||............ |
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h 530 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSF-------DLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVKTSRWAFR 530 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEE-------ECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred EEEeecCCCeEEEEECCCccccc-------cccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCCCcceeEeecCC
Confidence 999999 9999999998765431 2236788999999999998 7999999999999999887766655555 7
Q ss_pred CCCeEEEEEeC----------CCCEEEEEeCCCcEEEEEcCCC
Q 002086 729 TSSQISAAFNA----------DGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 729 ~~~V~sl~fsp----------dg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
...|++++|+| ++++|++++.||.|+|||+.++
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 88999999999 9999999999999999999874
No 29
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.9e-32 Score=299.06 Aligned_cols=253 Identities=17% Similarity=0.282 Sum_probs=209.1
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+..+.+|.+.|++++|+|+|++||||+.|++|+|||+..+.
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~--------------------------------------- 42 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET--------------------------------------- 42 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------------------------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------------------------------
Confidence 34578999999999999999999999999999999986321
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~V 597 (969)
.+.+..+.+|.+.|++++|++ +++|++|+.|++|+|||+.+++ .+..+ .|...|
T Consensus 43 --------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v 102 (297)
T 2pm7_B 43 --------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV 102 (297)
T ss_dssp --------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCE
T ss_pred --------------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCce
Confidence 112347889999999999975 6899999999999999999874 33444 799999
Q ss_pred EEEEEecCC--CCEEEEEECCCeEEEEeCCCce---EEEEecCCCCEEEEEEccC-------------CCEEEEEeCCCc
Q 002086 598 TCIQFNPMD--DDYFISGSLDAKVRIWSISDRL---VVDWTDLHEMVTAACYTPD-------------GQNALIGSHKGS 659 (969)
Q Consensus 598 ~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~~---~~~~~~~~~~V~sv~fspd-------------g~~Lasgs~dg~ 659 (969)
.+++|+| + +.+|++++.|++|++||++.+. ...+..|...|.+++|+|+ +++|++|+.|++
T Consensus 103 ~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~ 181 (297)
T 2pm7_B 103 NSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (297)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC
T ss_pred eEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc
Confidence 9999999 5 7899999999999999998753 4556778889999999997 579999999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC--CceEEEEeCCCcEEEEeCCcce-----EEEEeecCCCCe
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN--PSEVLVTSADSRIRILDGLDIV-----HKFRGFRNTSSQ 732 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~--~~~l~sgs~Dg~I~IwD~~~~~-----~~~~~~~~~~~V 732 (969)
|+|||++++..... ......+|...|.+++|+|++ ..+|++++.|++|+|||..... ..+....+...|
T Consensus 182 v~lwd~~~~~~~~~----~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v 257 (297)
T 2pm7_B 182 VKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (297)
T ss_dssp EEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred EEEEEEcCCCceEE----EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE
Confidence 99999987652211 112236799999999999985 4799999999999999965421 112123456789
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.+++|+|+|++|++++.||.|+||+...
T Consensus 258 ~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 258 WRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999999999874
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-32 Score=308.55 Aligned_cols=246 Identities=25% Similarity=0.424 Sum_probs=209.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.|++++|+|||++||+|+.|++|+|||+.+++.+.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------------------- 159 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM--------------------------------------------- 159 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---------------------------------------------
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---------------------------------------------
Confidence 59999999999999999999999999998766543
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~ 611 (969)
.+.+|...|.+++|+| +.+|++|+.|++|++||+.++++...+.+...+.+++|+|.++.+|+
T Consensus 160 ----------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (393)
T 1erj_A 160 ----------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223 (393)
T ss_dssp ----------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred ----------------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEE
Confidence 5678999999999999 88999999999999999999999999999999999999997789999
Q ss_pred EEECCCeEEEEeCCCceEEEEe--------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee----eeec
Q 002086 612 SGSLDAKVRIWSISDRLVVDWT--------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ----VDFQ 679 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~--------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~----~~~~ 679 (969)
+|+.|+.|++||++++..+... .|...|.+++|+|++++|++|+.|+.|++||++......... ....
T Consensus 224 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~ 303 (393)
T 1erj_A 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303 (393)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE
T ss_pred EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcce
Confidence 9999999999999988766543 577889999999999999999999999999998654321100 0011
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC------CCCEEEEEeCCCcE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA------DGKYIISASEDSQV 753 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp------dg~~LaSgs~Dg~I 753 (969)
....+|...|.+++|+|++ .+|++++.|+.|++||............|...|.+++|++ ++.+|++|+.||+|
T Consensus 304 ~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i 382 (393)
T 1erj_A 304 VTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 382 (393)
T ss_dssp EEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred EEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcE
Confidence 2235788999999999988 7999999999999999877665555566788899999986 68899999999999
Q ss_pred EEEEcCC
Q 002086 754 YVWKREE 760 (969)
Q Consensus 754 ~IWdl~t 760 (969)
+||++..
T Consensus 383 ~iW~~~~ 389 (393)
T 1erj_A 383 RIWKYKK 389 (393)
T ss_dssp EEEEEEE
T ss_pred EECcccc
Confidence 9999865
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-32 Score=300.67 Aligned_cols=297 Identities=16% Similarity=0.281 Sum_probs=215.7
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccc--eEEEee-cC-CccCcccccccCCCCCccCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC--EVMSMS-EG-NLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg--~~l~~~-~~-~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
..++++++|++|.+.|++++|+++ +||||+.|++|+|||+..+ +.+..+ .+ +...+..+.+.+........+..
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 346678899999999999999988 9999999999999999875 344444 33 55566666555543222111110
Q ss_pred CCCCcccccCCCCCCCCcccccceeeec--------CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSL--------SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET- 584 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t- 584 (969)
....+|.. ..+.+..+.+|...|.+++|+| +++|++|+.|++|+|||+..
T Consensus 80 --------------------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 80 --------------------STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp --------------------SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred --------------------CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 01122222 2234567899999999999999 89999999999999999943
Q ss_pred ---CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--e-EEEEecCCCCEEEEEEccC--CCEEEEEe
Q 002086 585 ---KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--L-VVDWTDLHEMVTAACYTPD--GQNALIGS 655 (969)
Q Consensus 585 ---~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~-~~~~~~~~~~V~sv~fspd--g~~Lasgs 655 (969)
.+++..+ +|...|.+++|+| ++.+|++|+.|++|++||+.++ + +..+..|...|.+++|+|+ +.+|++|+
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 218 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred CCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence 2455555 7999999999999 8999999999999999999765 3 3456678899999999998 77899999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccc-cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEE-eecCCC-
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKK-KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFR-GFRNTS- 730 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~-~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~-~~~~~~- 730 (969)
.|++|++||+................. ..|...|.+++|++++ +|++++.|+.|+||+..... .... ...|..
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~ 296 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVY 296 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTS
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccc
Confidence 999999999875421100000011111 2488899999999754 89999999999999965432 1212 234555
Q ss_pred CeEEEEEeC--CCCEEEEEeCCCcEEEEEcCC
Q 002086 731 SQISAAFNA--DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 731 ~V~sl~fsp--dg~~LaSgs~Dg~I~IWdl~t 760 (969)
.|.+++|+| ++++|++|+.||+|+||++++
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 799999999 789999999999999999875
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-31 Score=294.08 Aligned_cols=291 Identities=23% Similarity=0.355 Sum_probs=236.1
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
...+..++.+|.+.|++++|+|++++|++|+.||.|+||++.+++....+.++...+..+.+.+........+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------ 85 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD------ 85 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET------
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC------
Confidence 35567789999999999999999999999999999999999999988888877777766665554322211111
Q ss_pred ccccCCCCCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.....+|.. ..+.+..+.+|...|.++.|+| +++|++|+.|++|++||+.+++++..+ .|...
T Consensus 86 --------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 86 --------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp --------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred --------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 011234444 3456678899999999999999 899999999999999999999988877 78999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
|.+++|+| ++.+|++++.||.|++||+++++.+... .+...+..++|+|++++|++++.||.|++||+.+++.....
T Consensus 152 v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 152 VSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 99999999 8999999999999999999998766543 34567999999999999999999999999999988765432
Q ss_pred eeeecccccCCCCC--eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe--CC
Q 002086 675 QVDFQTKKKSSTRK--ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS--ED 750 (969)
Q Consensus 675 ~~~~~~~~~~h~~~--It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs--~D 750 (969)
..|... .....+++.+..+|++++.|+.|++||............|...|.+++|+|++.+|++++ .|
T Consensus 231 --------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d 302 (312)
T 4ery_A 231 --------TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302 (312)
T ss_dssp --------CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTT
T ss_pred --------EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCC
Confidence 223322 223345544447999999999999999877665555566788899999999999999997 69
Q ss_pred CcEEEEEcC
Q 002086 751 SQVYVWKRE 759 (969)
Q Consensus 751 g~I~IWdl~ 759 (969)
+.|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999975
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-30 Score=286.56 Aligned_cols=324 Identities=15% Similarity=0.207 Sum_probs=248.6
Q ss_pred CCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHh
Q 002086 337 HSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQK 416 (969)
Q Consensus 337 Hs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~ 416 (969)
|...|.++++..++..++.+..+..+..|... ..........+.....++.|+++...+...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~------------- 69 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIP-----RHARQINTLNHGEVVCAVTISNPTRHVYTG------------- 69 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCC-----SEEEEEEEECCSSCCCEEEECSSSSEEEEE-------------
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccC-----CccccceeccCCCceEEEEEecCCcEEEEc-------------
Confidence 45678888887777766555444433333211 110000111223344445555555443322
Q ss_pred hccccCcceEEEccCCCcccccccceeeeEec--ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc
Q 002086 417 QNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ--AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT 494 (969)
Q Consensus 417 ~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~--gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~ 494 (969)
.++.+.++....+... ..+..+. +|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 70 ---~dg~i~iw~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~------- 133 (337)
T 1gxr_A 70 ---GKGCVKVWDISHPGNK------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI------- 133 (337)
T ss_dssp ---CBSEEEEEETTSTTCC------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE-------
T ss_pred ---CCCeEEEEECCCCCce------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce-------
Confidence 1333333333222211 1222333 899999999999999999999999999999998654211
Q ss_pred CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC
Q 002086 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM 573 (969)
Q Consensus 495 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~ 573 (969)
...+.+|...|.+++|++ +++|++++.
T Consensus 134 ----------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 134 ----------------------------------------------------KAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp ----------------------------------------------------EEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred ----------------------------------------------------eeecccCCCceEEEEECCCCCEEEEEeC
Confidence 225667999999999999 789999999
Q ss_pred CCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEE
Q 002086 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~La 652 (969)
|+.|++||+.+++.+..+ .|...|.+++|+| ++.+|++++.||.|++||+++++.+....+...+.+++|+|++++|+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEE
Confidence 999999999999988877 6999999999999 89999999999999999999999888888889999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCe
Q 002086 653 IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQ 732 (969)
Q Consensus 653 sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V 732 (969)
+++.++.|++||+.+.+... ...|...|.+++|+|++ .+|++++.|+.|++||......... ..+...+
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v 309 (337)
T 1gxr_A 241 VGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSV 309 (337)
T ss_dssp EEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE-EECSSCE
T ss_pred EEcCCCcEEEEECCCCCeEE---------EcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEEEE-ecCCCcE
Confidence 99999999999999876432 15678899999999988 7899999999999999776554433 4467789
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.+++|+|++++|++++.||.|++|++
T Consensus 310 ~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 310 LSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999999997
No 34
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.3e-31 Score=329.55 Aligned_cols=252 Identities=19% Similarity=0.288 Sum_probs=221.3
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+++.+.|.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+.
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------------------------- 49 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------------------------- 49 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---------------------------------
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---------------------------------
Confidence 45667899999999999999999999999999999999998876654
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVT 598 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~ 598 (969)
.+.+|...|.+++|+| +++|++|+.||.|++||+.+++.+..+ +|...|+
T Consensus 50 ----------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~ 101 (814)
T 3mkq_A 50 ----------------------------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (814)
T ss_dssp ----------------------------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ----------------------------EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE
Confidence 5667999999999999 889999999999999999999998877 6999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCc-eE-EEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDR-LV-VDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~-~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
+++|+| ++.+|++++.||.|++||+.++ .. ..+..|...|.+++|+| ++..|++++.||.|++||+.++.......
T Consensus 102 ~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 102 SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp EEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence 999999 9999999999999999999876 43 34556788999999999 88999999999999999998776533221
Q ss_pred eeecccccCCCCCeEEEEEcC--CCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 676 VDFQTKKKSSTRKITGFQFSP--SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fsp--d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
..+...+.+++|+| ++ .++++++.|+.|++||............|...|.+++|+|++.+|++++.||.|
T Consensus 181 -------~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 181 -------TGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (814)
T ss_dssp -------CCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred -------cCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 34458899999999 66 799999999999999987766555556677889999999999999999999999
Q ss_pred EEEEcCCCC
Q 002086 754 YVWKREEHR 762 (969)
Q Consensus 754 ~IWdl~t~~ 762 (969)
++||+.+++
T Consensus 253 ~vwd~~~~~ 261 (814)
T 3mkq_A 253 KIWNSSTYK 261 (814)
T ss_dssp EEEETTTCS
T ss_pred EEEECCCCc
Confidence 999998743
No 35
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5e-31 Score=292.34 Aligned_cols=293 Identities=20% Similarity=0.349 Sum_probs=226.5
Q ss_pred cccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccce-----EEEeecCCccCcccccccCCCCCccCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECE-----VMSMSEGNLTPIHPSLCNSSDKASSLD 511 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~-----~l~~~~~~~~~v~~~~~~~~~~~~~~~ 511 (969)
-+.+++..+|+||.+.|++|+|+|+ +++|||||.|++|+|||+.+.+ ....+.++...+..+.+.+........
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 3456677899999999999999997 6899999999999999987643 344566666666665555433222111
Q ss_pred CCCCCCCcccccCCCCCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEE
Q 002086 512 GSSPNPPPEKKKKGKHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLK 589 (969)
Q Consensus 512 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~ 589 (969)
+.. ....+|.. ..........+...+..+.+++ +.+|++|+.|+.+++||+.......
T Consensus 105 ~~d--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 105 SWD--------------------GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 164 (340)
T ss_dssp ETT--------------------SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred ccc--------------------ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE
Confidence 100 00112222 2233445667888899999998 8899999999999999998776655
Q ss_pred Ee--ecCCCeEEEEEecCC-CCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002086 590 LF--AHNDYVTCIQFNPMD-DDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSI 665 (969)
Q Consensus 590 ~~--~h~~~V~sv~fsp~~-~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl 665 (969)
.. +|...|.+++|++.. ..++++++.|+.|++||+.+++++. +..|...|++++|+|++++|++|+.||.|++||+
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 44 789999999998732 3578899999999999999987665 4567889999999999999999999999999999
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE---------eecCCCCeEEEE
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR---------GFRNTSSQISAA 736 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~---------~~~~~~~V~sl~ 736 (969)
.+.+..... .+...|.++.|+|++ .+++++.|+.|++||......... ...+...|++++
T Consensus 245 ~~~~~~~~~---------~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 245 NEGKHLYTL---------DGGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp TTTEEEEEE---------ECSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred ccCceeeee---------cCCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence 988765432 234679999999975 677888899999999765433222 234677899999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 737 FNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 737 fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|+|||++|++|+.||.|+|||+.++
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 9999999999999999999999985
No 36
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-31 Score=335.25 Aligned_cols=397 Identities=12% Similarity=0.089 Sum_probs=260.5
Q ss_pred CCcEEEEeeCCCCcEEE---------EeeccCCCc---------eeEEEecCCCceeeeeehhhccCCCcceeeeecccc
Q 002086 288 LGAFFLIKNLDTGKEFI---------VNEYSENGM---------WNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRREN 349 (969)
Q Consensus 288 ~~~~~~i~~ld~g~~~v---------v~~~~~dg~---------~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~ 349 (969)
.++.++||+.++++... ...|+. |. .++|||+++++.+. .+ .|...|.++++..+
T Consensus 37 ~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~--~~----~~~~~V~~v~~sp~ 109 (902)
T 2oaj_A 37 VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT--TV----FVPGKITSIDTDAS 109 (902)
T ss_dssp TTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE--EE----ECSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE--EE----cCCCCEEEEEECCC
Confidence 56788888877654332 222333 33 35899999998754 22 26678999999888
Q ss_pred cccccCCCCccccccccccccccccccc-----c-cccceeeeeEEEeeecCCcc-ccCCCCcccchHHHHHHhhccccC
Q 002086 350 VNRINDSAGKFSANSYLSKSLRMSKRRG-----A-ALLKNIKGVAHSMSVKGDKE-CINPNPLLGDQREQKEQKQNKNVS 422 (969)
Q Consensus 350 ~~~~~t~s~d~~v~~~~~~~~~~~k~~~-----~-~~l~~v~gv~~s~~~~gd~~-~~~~~~l~~~~~~~~~~~~~~~~~ 422 (969)
...+++++.+..+..|.....++..... . ..++.+.+.+.+++|+++.. .+.. ...++
T Consensus 110 g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~---------------g~~dg 174 (902)
T 2oaj_A 110 LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI---------------SYEYV 174 (902)
T ss_dssp CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE---------------ECSSC
T ss_pred CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE---------------EeCCC
Confidence 8888888899988888654322210000 0 11223334445555555421 1111 11222
Q ss_pred cceEEEccCCCcccccccceeeeEeccc------------------ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce
Q 002086 423 NHWVKVRQSGKSYKDLSALHLCQEIQAH------------------EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484 (969)
Q Consensus 423 ~~~v~v~~~~~~l~dl~~~~l~~~L~gH------------------~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~ 484 (969)
.+ +|++...+.++.+.+| ...|++++|+|||++||||+.||+|+|||+.+++
T Consensus 175 ~v----------lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 175 TL----------TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EE----------EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred cE----------EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 22 2355555556666554 6889999999999999999999999999999888
Q ss_pred EEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEec-
Q 002086 485 VMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS- 563 (969)
Q Consensus 485 ~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs- 563 (969)
.+..........+. .. ...+. .-..|...|++++|+
T Consensus 245 ~~~~r~l~~~~~~~----------------~~--------------------------~~~~~-~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 245 MIMARTVFETEINV----------------PQ--------------------------PDYIR-DSSTNAAKISKVYWMC 281 (902)
T ss_dssp EEEEECSSCSCTTS----------------CC--------------------------TTCCC-CCSSCCCEEEEEEEEE
T ss_pred EEEEEeecccccCC----------------CC--------------------------CcCCC-CCccccCCeeEEEEEe
Confidence 76531100000000 00 00000 000356789999995
Q ss_pred ---CC--cEEEEEeCC-----CcEEEEECC------------------CCcEEEEe--ecCCCeEEEEEec---------
Q 002086 564 ---RS--HLLLSSSMD-----KTVRLWDME------------------TKSCLKLF--AHNDYVTCIQFNP--------- 604 (969)
Q Consensus 564 ---~~--~~L~Sgs~D-----gtV~IWDl~------------------t~~~i~~~--~h~~~V~sv~fsp--------- 604 (969)
|+ .+|++|+.| +.|.+|++. +.++...+ .+...|.++.+.+
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence 32 567777776 389999853 33445554 5788899999865
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEE--------ecCCCCEE----------------------------------EE
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDW--------TDLHEMVT----------------------------------AA 642 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~--------~~~~~~V~----------------------------------sv 642 (969)
.+...+++++.||.|++||+.++..... ..+...|+ .+
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv 441 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK 441 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcc
Confidence 1345889999999999999977643221 12223344 44
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec---ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ---TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI 719 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~---~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~ 719 (969)
+|+|++++|++|+.|++|++||+.++.......+... ....+|...|.+++|+|++ .+|++|+.|++|+|||....
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEEC
T ss_pred cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCc
Confidence 5578899999999999999999988753211111100 0013788899999999998 79999999999999995432
Q ss_pred ---------------------------------------------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 720 ---------------------------------------------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 720 ---------------------------------------------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
........|...|++++|+||| +||+|+.|++|+
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~ 599 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLM 599 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEE
Confidence 1122334478899999999999 999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
|||++++
T Consensus 600 lwd~~~~ 606 (902)
T 2oaj_A 600 LIDRRGP 606 (902)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9999764
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=303.30 Aligned_cols=304 Identities=17% Similarity=0.211 Sum_probs=227.1
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEec----ccceE------EEeecCCccCcccccccCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEV----QECEV------MSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl----~tg~~------l~~~~~~~~~v~~~~~~~~ 504 (969)
++++..........|.+.|++++|+|+++ +||+|+.|+.|+||++ .+++. ...+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~------------ 97 (425)
T 1r5m_A 30 DDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP------------ 97 (425)
T ss_dssp ----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC------------
T ss_pred ccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc------------
Confidence 34444444444556779999999999999 9999999999999999 77662 2211100
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME 583 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~ 583 (969)
........+|.+.|++++|+| +++|++|+.||.|++|| .
T Consensus 98 ---------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~ 137 (425)
T 1r5m_A 98 ---------------------------------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-K 137 (425)
T ss_dssp ---------------------------------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-T
T ss_pred ---------------------------------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-C
Confidence 000013346888999999999 88999999999999999 5
Q ss_pred CCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-CC---------------EEEEEEcc
Q 002086 584 TKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-EM---------------VTAACYTP 646 (969)
Q Consensus 584 t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-~~---------------V~sv~fsp 646 (969)
+++.+..+ .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+...... .. +.+++|++
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (425)
T 1r5m_A 138 TGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216 (425)
T ss_dssp TSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE
T ss_pred CCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC
Confidence 56666655 7999999999999 9999999999999999999998876655443 33 88999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~ 726 (969)
++ .+++++.+|.|++||+..++..... ..|...|.+++|+|++ .+|++++.|+.|++||...........
T Consensus 217 ~~-~~~~~~~~g~i~~~d~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~ 286 (425)
T 1r5m_A 217 DD-KFVIPGPKGAIFVYQITEKTPTGKL--------IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFY 286 (425)
T ss_dssp TT-EEEEECGGGCEEEEETTCSSCSEEE--------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEEC
T ss_pred CC-EEEEEcCCCeEEEEEcCCCceeeee--------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEec
Confidence 85 6889999999999999987654322 5688899999999988 799999999999999977654444445
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEE
Q 002086 727 RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQT 806 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~ 806 (969)
.+...|.+++|+|++ +|++++.||.|++||+.++ +.......+..
T Consensus 287 ~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~---------------------------- 331 (425)
T 1r5m_A 287 GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------TLLALSIVDGV---------------------------- 331 (425)
T ss_dssp CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT------EEEEEEECTTC----------------------------
T ss_pred CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC------cEeEecccCCc----------------------------
Confidence 567889999999999 9999999999999999873 32222211111
Q ss_pred cccccccCCCCcccccCCCCCCccccCCCCccccCCCCCC
Q 002086 807 KKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTN 846 (969)
Q Consensus 807 ~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~ 846 (969)
......++|++.++++++.++.+..|...+.
T Consensus 332 ---------~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 332 ---------PIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp ---------CEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred ---------cEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 1123456778888888888888888876543
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-31 Score=302.04 Aligned_cols=357 Identities=15% Similarity=0.130 Sum_probs=259.2
Q ss_pred EEEecCCCceeeeeehhhccCCCcceeeeecccccc-cccCCCCccccccccc----ccccc----ccccc-ccccc---
Q 002086 316 KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVN-RINDSAGKFSANSYLS----KSLRM----SKRRG-AALLK--- 382 (969)
Q Consensus 316 ~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~-~~~t~s~d~~v~~~~~----~~~~~----~k~~~-~~~l~--- 382 (969)
.+|+++..... -....|...|.++++..+.. .+++++.+..+..|.. ...+. ..... .+.+.
T Consensus 28 ~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 28 SSDDLDGFVKI-----LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp ------CCCEE-----CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred ccccchhhhhh-----eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence 57888766542 23346778999999877777 8888888888888765 22110 00000 00000
Q ss_pred ---eeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEE
Q 002086 383 ---NIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKF 459 (969)
Q Consensus 383 ---~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~f 459 (969)
...+...++.|+++...++.. ..++.+.++ + ...+.+..+.+|.+.|++++|
T Consensus 103 ~~~~~~~~v~~~~~s~~~~~l~~~---------------~~dg~i~i~---------~-~~~~~~~~~~~~~~~v~~~~~ 157 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSHDGNSIVTG---------------VENGELRLW---------N-KTGALLNVLNFHRAPIVSVKW 157 (425)
T ss_dssp -----CBCEEEEEECTTSSEEEEE---------------ETTSCEEEE---------E-TTSCEEEEECCCCSCEEEEEE
T ss_pred cccCCCCceEEEEEcCCCCEEEEE---------------eCCCeEEEE---------e-CCCCeeeeccCCCccEEEEEE
Confidence 123355566666655442221 123333333 2 334567788999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccccccee
Q 002086 460 SLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETV 539 (969)
Q Consensus 460 SpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 539 (969)
+|++++|++++.|+.|++||+.+++.+..+..+......
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------------------------------------- 196 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS----------------------------------------- 196 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------------------------------------------
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc-----------------------------------------
Confidence 999999999999999999999998887754432111000
Q ss_pred eecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCe
Q 002086 540 FSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAK 618 (969)
Q Consensus 540 ~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~ 618 (969)
.......++...|.++.|+++..+++++.|+.|++||+.+++.+..+ .|...|.+++|+| ++.+|++++.|+.
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 197 -----INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGT 270 (425)
T ss_dssp --------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred -----eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCE
Confidence 00001223344588899999889999999999999999999887776 7999999999999 8999999999999
Q ss_pred EEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 619 VRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 619 I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
|++||+.+++.+. +..+...|.+++|+|++ +|++++.|+.|++||+.+++..... ..|...|.+++|+|+
T Consensus 271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS--------IVDGVPIFAGRISQD 341 (425)
T ss_dssp EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE--------ECTTCCEEEEEECTT
T ss_pred EEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec--------ccCCccEEEEEEcCC
Confidence 9999999876554 44578899999999999 9999999999999999988765432 457889999999998
Q ss_pred CCceEEEEeCCCcEEEEeCCcce--------------------EEEEeecCCC--CeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 698 NPSEVLVTSADSRIRILDGLDIV--------------------HKFRGFRNTS--SQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~~--------------------~~~~~~~~~~--~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
+ .+|++++.|+.|++||..... .......+.. .|.+++|+|++++|++++.||.|+|
T Consensus 342 ~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 342 G-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp S-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred C-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 8 799999999999999976544 3333444444 8999999999999999999999999
Q ss_pred EEcC
Q 002086 756 WKRE 759 (969)
Q Consensus 756 Wdl~ 759 (969)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9986
No 39
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.3e-31 Score=294.22 Aligned_cols=288 Identities=16% Similarity=0.258 Sum_probs=230.2
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
...+.||...|.++++..+...+++++.|..+..|.... ......+......+..+.|+++...+...
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~------- 115 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACG------- 115 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-----CCEEEEEECSSSCEEEEEECTTSSEEEEE-------
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-----CCcceEeecCCccEEEEEECCCCCEEEEE-------
Confidence 356689999999999988888899999999887775332 22222223333445556666665443221
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..+..+.++...... ........+.+|.+.|.++.|++++. |++++.|++|+|||+.+++.+.
T Consensus 116 --------~~d~~v~iw~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~--- 178 (340)
T 1got_B 116 --------GLDNICSIYNLKTRE-----GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT--- 178 (340)
T ss_dssp --------ETTCEEEEEETTTCS-----BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE---
T ss_pred --------eCCCeEEEEECccCC-----CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE---
Confidence 123333333222111 12356678999999999999998875 8999999999999998876544
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL 569 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~ 569 (969)
.+.+|.+.|.+++|+| +.+|+
T Consensus 179 ----------------------------------------------------------~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 179 ----------------------------------------------------------TFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp ----------------------------------------------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------------EEcCCCCceEEEEECCCCCEEE
Confidence 5668999999999999 78999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC---CCEEEEEEc
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYT 645 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~fs 645 (969)
+|+.|++|++||+.++.++..+ +|...|++++|+| ++.+|++|+.||+|++||++.++.+....+. ..|.+++|+
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence 9999999999999999998887 7999999999999 9999999999999999999998877665544 479999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 646 PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 646 pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
|+|++|++|+.||.|++||+.+.+..... .+|...|.+++|+|++ .+|++++.|+.|+|||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVL--------AGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEe--------ecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence 99999999999999999999887754332 6789999999999988 7999999999999997
No 40
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-30 Score=295.58 Aligned_cols=290 Identities=18% Similarity=0.223 Sum_probs=229.6
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
..+.||...|+++++..+...+++++.|..+..|.....+... .+......+.++.|+++...+..
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-----~~~~~~~~v~~~~~sp~g~~las--------- 123 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-----AVTMPCTWVMACAYAPSGCAIAC--------- 123 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----EEECSSSCCCEEEECTTSSEEEE---------
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-----EEecCCCCEEEEEECCCCCEEEE---------
Confidence 4568999999999998888899999999999888744322211 11112223344555555544322
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecC
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEG 491 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~ 491 (969)
...+....++....... .........+.+|.+.|.+++|+|++.+|++|+.|++|+|||+.+++.+.
T Consensus 124 ------g~~d~~i~v~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~---- 190 (354)
T 2pbi_B 124 ------GGLDNKCSVYPLTFDKN---ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ---- 190 (354)
T ss_dssp ------ESTTSEEEEEECCCCTT---CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE----
T ss_pred ------eeCCCCEEEEEEecccc---ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE----
Confidence 22333444443322211 11123456788999999999999999999999999999999998776544
Q ss_pred CccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEE
Q 002086 492 NLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLL 568 (969)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L 568 (969)
.+.+|...|.+++|++ +++|
T Consensus 191 ---------------------------------------------------------~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 191 ---------------------------------------------------------SFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ---------------------------------------------------------EEECCSSCEEEEEECCCSSCCEE
T ss_pred ---------------------------------------------------------EEcCCCCCeEEEEEEeCCCCCEE
Confidence 5678999999999987 4799
Q ss_pred EEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC---CCEEEEEE
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACY 644 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~f 644 (969)
++|+.||+|++||+.+++++..+ .|...|++++|+| ++.+|++|+.|++|++||++.+..+...... ..+.+++|
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 99999999999999999999887 7999999999999 8999999999999999999988766555433 46899999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 645 TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 645 spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
+|++.+|++|+.|+.|++||+.+++.... ..+|...|++++|+|++ .+|++++.|++|+||+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--------l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSI--------LFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEE--------ECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEE--------EECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence 99999999999999999999988775432 26789999999999998 7999999999999996
No 41
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-30 Score=285.75 Aligned_cols=292 Identities=15% Similarity=0.259 Sum_probs=238.7
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.......|.+|.+.|++|+|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-------------------------------- 68 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-------------------------------- 68 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--------------------------------
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--------------------------------
Confidence 344556799999999999999999999999999999999998766544
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT 598 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~ 598 (969)
.+.+|...|.+++|++ +++|++++.||.|++||+.+++++..+.+...|.
T Consensus 69 -----------------------------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 119 (369)
T 3zwl_B 69 -----------------------------TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK 119 (369)
T ss_dssp -----------------------------EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE
T ss_pred -----------------------------hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE
Confidence 5667999999999999 8899999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEECC-----CeEEEEeCCCce------------EEEEecCCC--CEEEEEEccCCCEEEEEeCCCc
Q 002086 599 CIQFNPMDDDYFISGSLD-----AKVRIWSISDRL------------VVDWTDLHE--MVTAACYTPDGQNALIGSHKGS 659 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~------------~~~~~~~~~--~V~sv~fspdg~~Lasgs~dg~ 659 (969)
+++|+| ++.+|++++.+ +.|++||+.... ......+.. .+.+++|+|++++|++++.||.
T Consensus 120 ~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 198 (369)
T 3zwl_B 120 RVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198 (369)
T ss_dssp EEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred EEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence 999999 99999999999 999999996542 223344444 8999999999999999999999
Q ss_pred EEEEEcCC-CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe
Q 002086 660 CRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 660 I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs 738 (969)
|++||+.+ ...... ...|...|.+++|+|++ .+|++++.|+.|++||.......... .+...+..++|+
T Consensus 199 i~i~d~~~~~~~~~~--------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~ 268 (369)
T 3zwl_B 199 ISKYDVSNNYEYVDS--------IDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKY-ETDCPLNTAVIT 268 (369)
T ss_dssp EEEEETTTTTEEEEE--------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC
T ss_pred EEEEECCCCcEeEEE--------EecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeee-cCCCCceeEEec
Confidence 99999998 443322 15678899999999987 79999999999999998765443333 367789999999
Q ss_pred CCCCEEEEEeCCC--------------cEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccE
Q 002086 739 ADGKYIISASEDS--------------QVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPV 804 (969)
Q Consensus 739 pdg~~LaSgs~Dg--------------~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v 804 (969)
|++++|++++.++ .|++||+.++ +.......+...
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~------------------------- 317 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE------EEIGRVQGHFGP------------------------- 317 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTTC------CEEEEEECCSSC-------------------------
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC------cchhheecccCc-------------------------
Confidence 9999999999998 7888887763 222222111111
Q ss_pred EEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCC
Q 002086 805 QTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTN 846 (969)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~ 846 (969)
.....++|++.++++++.++.+..|....+
T Consensus 318 ------------v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 318 ------------LNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ------------EEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ------------EEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 223456788888888888998988876543
No 42
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-30 Score=292.00 Aligned_cols=255 Identities=17% Similarity=0.282 Sum_probs=213.4
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+++..+.+|.+.|++++|+|++++||+|+.||.|+|||+......
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------------- 46 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK----------------------------------- 46 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-----------------------------------
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-----------------------------------
Confidence 456778999999999999999999999999999999998732211
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~ 595 (969)
.+..+.+|...|++++|++ +.+|++|+.||.|++||+.+++ .+..+ .|..
T Consensus 47 ------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 102 (379)
T 3jrp_A 47 ------------------------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA 102 (379)
T ss_dssp ------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred ------------------------eeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc
Confidence 1235778999999999975 6899999999999999999987 44444 6999
Q ss_pred CeEEEEEecCC--CCEEEEEECCCeEEEEeCCCc---eEEEEecCCCCEEEEEEcc-------------CCCEEEEEeCC
Q 002086 596 YVTCIQFNPMD--DDYFISGSLDAKVRIWSISDR---LVVDWTDLHEMVTAACYTP-------------DGQNALIGSHK 657 (969)
Q Consensus 596 ~V~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~---~~~~~~~~~~~V~sv~fsp-------------dg~~Lasgs~d 657 (969)
.|.+++|+| + +.+|++++.|+.|++||+..+ .......+...|.+++|+| ++.+|++++.|
T Consensus 103 ~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 181 (379)
T 3jrp_A 103 SVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181 (379)
T ss_dssp CEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred ceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence 999999999 7 899999999999999999876 3456667889999999999 69999999999
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC--CceEEEEeCCCcEEEEeCCcc-----eEEEEeecCCC
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN--PSEVLVTSADSRIRILDGLDI-----VHKFRGFRNTS 730 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~--~~~l~sgs~Dg~I~IwD~~~~-----~~~~~~~~~~~ 730 (969)
|.|++||++....... .......|...|.+++|+|++ +.+|++++.|+.|++||.... ...+....+..
T Consensus 182 g~i~i~d~~~~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (379)
T 3jrp_A 182 NLVKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 257 (379)
T ss_dssp SCEEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred CeEEEEEecCCCccee----eEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC
Confidence 9999999987654322 112236788999999999993 489999999999999997653 22233334778
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 731 SQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 731 ~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.|.+++|+|+|++|++++.||.|+||++..
T Consensus 258 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 258 VLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 899999999999999999999999999985
No 43
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.7e-31 Score=296.88 Aligned_cols=248 Identities=17% Similarity=0.267 Sum_probs=199.7
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+.+++...
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~-------------------------------------- 49 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL-------------------------------------- 49 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE--------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE--------------------------------------
Confidence 467999999999999999999999999999999997654211
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCCeEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDYVTC 599 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~V~s 599 (969)
+..+.+|.+.|++++|++ +++|++|+.|++|+|||+.+++ .+..+ +|...|.+
T Consensus 50 ---------------------~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~ 108 (316)
T 3bg1_A 50 ---------------------IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNS 108 (316)
T ss_dssp ---------------------EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCE
T ss_pred ---------------------EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEE
Confidence 226789999999999975 6899999999999999999874 44444 79999999
Q ss_pred EEEecCC--CCEEEEEECCCeEEEEeCCCceEE----EEecCCCCEEEEEEccC-----------------CCEEEEEeC
Q 002086 600 IQFNPMD--DDYFISGSLDAKVRIWSISDRLVV----DWTDLHEMVTAACYTPD-----------------GQNALIGSH 656 (969)
Q Consensus 600 v~fsp~~--~~~L~sgs~Dg~I~IWDl~~~~~~----~~~~~~~~V~sv~fspd-----------------g~~Lasgs~ 656 (969)
++|+| + +.+|++|+.|++|++||++.+... ....|...|.+++|+|+ +++|++|+.
T Consensus 109 v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 187 (316)
T 3bg1_A 109 VCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC 187 (316)
T ss_dssp EEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT
T ss_pred EEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC
Confidence 99999 5 779999999999999999876322 23456678999999997 478999999
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC---CceEEEEeCCCcEEEEeCCcc------eEEEEeec
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN---PSEVLVTSADSRIRILDGLDI------VHKFRGFR 727 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~---~~~l~sgs~Dg~I~IwD~~~~------~~~~~~~~ 727 (969)
|+.|++||++...... ......+|...|.+++|+|++ ..+|++++.|++|+||+.... ...+ ..
T Consensus 188 D~~v~lWd~~~~~~~~-----~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~--~~ 260 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQWK-----EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL--HK 260 (316)
T ss_dssp TSBCCEEEECTTSCEE-----EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE--EE
T ss_pred CCeEEEEEeCCCCccc-----eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh--hc
Confidence 9999999997542111 111236789999999999985 368999999999999996541 1222 34
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 728 NTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+...|.+++|+|+|++|++++.|+.|+||+...
T Consensus 261 ~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 261 FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 567899999999999999999999999999864
No 44
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=3.4e-30 Score=317.35 Aligned_cols=242 Identities=24% Similarity=0.413 Sum_probs=201.7
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+.+.+|.+.|++++|+|++++|+||+.|++|+|||+.+++.+.
T Consensus 424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~------------------------------------- 466 (694)
T 3dm0_A 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR------------------------------------- 466 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee-------------------------------------
Confidence 4578999999999999999999999999999999998776543
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe----ecCCCeEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF----AHNDYVTC 599 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~~V~s 599 (969)
.+.+|...|.+++|+| +.+|++|+.|++|+|||+......... +|...|.+
T Consensus 467 ------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 467 ------------------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp ------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred ------------------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 5678999999999999 889999999999999998766554443 68899999
Q ss_pred EEEecCCC--CEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 600 IQFNPMDD--DYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 600 v~fsp~~~--~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
++|+| ++ ..|++++.|++|++||++++++.. +..|...|++++|+|++++|++|+.||.|+|||+.+++....
T Consensus 523 ~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~--- 598 (694)
T 3dm0_A 523 VRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS--- 598 (694)
T ss_dssp EEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC---
T ss_pred EEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE---
Confidence 99999 54 689999999999999999887664 556788999999999999999999999999999998876433
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee-------------------cCCCCeEEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF-------------------RNTSSQISAAF 737 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-------------------~~~~~V~sl~f 737 (969)
..+...|.+++|+|++ .+++++.++.|+|||........... .+...+++++|
T Consensus 599 ------~~~~~~v~~~~~sp~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 599 ------LEANSVIHALCFSPNR--YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp ------CBCSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred ------ecCCCcEEEEEEcCCC--cEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 1234679999999986 45555567779999976543322211 11224789999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcC
Q 002086 738 NADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+|||++|++|+.||.|+||++.
T Consensus 671 spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 671 SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999985
No 45
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=4.2e-30 Score=283.32 Aligned_cols=254 Identities=18% Similarity=0.260 Sum_probs=211.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
..+.+|.+.|++|+|+|++++||+|+.||.|+|||+.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4578999999999999999999999999999999987542110
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCC---------cEEEEe-
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETK---------SCLKLF- 591 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~---------~~i~~~- 591 (969)
+....+.+|...|.+++|++ +.+|++|+.||+|++||+.++ +++..+
T Consensus 48 --------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 107 (351)
T 3f3f_A 48 --------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN 107 (351)
T ss_dssp --------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC
T ss_pred --------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec
Confidence 12236778999999999998 789999999999999999987 445544
Q ss_pred ecCCCeEEEEEecCC--CCEEEEEECCCeEEEEeCCCceEEEE--------------ecCCCCEEEEEEccC---CCEEE
Q 002086 592 AHNDYVTCIQFNPMD--DDYFISGSLDAKVRIWSISDRLVVDW--------------TDLHEMVTAACYTPD---GQNAL 652 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~~~~~~--------------~~~~~~V~sv~fspd---g~~La 652 (969)
.|...|.+++|+| + +.+|++++.||.|++||+++++.+.. ..+...+.+++|+|+ +.+|+
T Consensus 108 ~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 186 (351)
T 3f3f_A 108 DSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 186 (351)
T ss_dssp CCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEE
T ss_pred ccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEE
Confidence 7999999999999 7 89999999999999999987643211 145678999999997 89999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC---ceEEEEeCCCcEEEEeCCcc----------
Q 002086 653 IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP---SEVLVTSADSRIRILDGLDI---------- 719 (969)
Q Consensus 653 sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~---~~l~sgs~Dg~I~IwD~~~~---------- 719 (969)
+++.++.+.+|+...++..... ....|...|++++|+|+++ .+|++++.|+.|++||....
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 260 (351)
T 3f3f_A 187 VSALEQAIIYQRGKDGKLHVAA------KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESL 260 (351)
T ss_dssp EEETTEEEEEEECTTSCEEEEE------ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------
T ss_pred EecCCCcEEEEccCCCceeeee------ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcc
Confidence 9999999988888777653322 2267899999999999874 68999999999999996542
Q ss_pred ------------------------------------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 720 ------------------------------------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 720 ------------------------------------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
........|...|++++|+|++++|++|+.||.|+||++.+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 2223334577889999999999999999999999999999753
No 46
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.8e-30 Score=327.18 Aligned_cols=342 Identities=10% Similarity=0.065 Sum_probs=233.8
Q ss_pred cCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHH
Q 002086 335 VGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKE 414 (969)
Q Consensus 335 ~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~ 414 (969)
.||...|.+|++..+...+++|+.|..+..|.......... ..+ ...+..+.|++ ...+.+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~~~----~~~V~~l~fsp-g~~L~S------------ 74 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--LED----RSAIKEMRFVK-GIYLVV------------ 74 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--CSS----CCCEEEEEEET-TTEEEE------------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--cCC----CCCEEEEEEcC-CCEEEE------------
Confidence 59999999999988888899999999888876432211110 011 23344455554 222111
Q ss_pred HhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc
Q 002086 415 QKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT 494 (969)
Q Consensus 415 ~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~ 494 (969)
...+..+. +|++...+++.++. |.+.|++++|+|++++|++|+.||+|++||+.++++... ...
T Consensus 75 ---~s~D~~v~---------lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~i~-- 138 (902)
T 2oaj_A 75 ---INAKDTVY---------VLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-KLD-- 138 (902)
T ss_dssp ---EETTCEEE---------EEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-EEC--
T ss_pred ---EECcCeEE---------EEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-eec--
Confidence 11222222 34566666777775 778999999999999999999999999999998765321 000
Q ss_pred CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC--cEEEEEe
Q 002086 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS--HLLLSSS 572 (969)
Q Consensus 495 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~--~~L~Sgs 572 (969)
. .+. ....+.+|.+.|++++|+|. ..|++|+
T Consensus 139 ~-------------------------------------------~~~----~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 139 N-------------------------------------------LQK----SSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp C-------------------------------------------HHH----HHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred c-------------------------------------------ccc----cccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 0 000 00123579999999999993 6899999
Q ss_pred CCCcEEEEECCCCcEEEEee-c------------------CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe
Q 002086 573 MDKTVRLWDMETKSCLKLFA-H------------------NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~-h------------------~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~ 633 (969)
.||+| +||+.+++++..+. | ...|++++|+| ++.+|++|+.||+|++||+++++++...
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 99999 99999999888773 3 47899999999 8999999999999999999988776531
Q ss_pred c-------------------CCCCEEEEEEcc----CC-CEEEEEeCC-----CcEEEEEcC------------------
Q 002086 634 D-------------------LHEMVTAACYTP----DG-QNALIGSHK-----GSCRLYSIE------------------ 666 (969)
Q Consensus 634 ~-------------------~~~~V~sv~fsp----dg-~~Lasgs~d-----g~I~IwDl~------------------ 666 (969)
. +...|++++|++ ++ .+|++|+.+ ..+.+|++.
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~ 329 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA 329 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence 1 234699999964 33 456666554 266666631
Q ss_pred -----------------------------------------------------CCceeeeeeeeecccccCCCCCeEEE-
Q 002086 667 -----------------------------------------------------DSKLHQLNQVDFQTKKKSSTRKITGF- 692 (969)
Q Consensus 667 -----------------------------------------------------~~~~~~~~~~~~~~~~~~h~~~It~l- 692 (969)
++...... .........|...|+++
T Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~-~~~~~~l~~~~~~v~~~~ 408 (902)
T 2oaj_A 330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA-SLFPQNLSWLRPLATTSM 408 (902)
T ss_dssp SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG-GGSCGGGTTBTTBEEEEE
T ss_pred CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc-ccCCCcccccCCCeeEEE
Confidence 11000000 00000011122344444
Q ss_pred ---------------------------------EEcCCCCceEEEEeCCCcEEEEeCCcce----EEEEe-------ecC
Q 002086 693 ---------------------------------QFSPSNPSEVLVTSADSRIRILDGLDIV----HKFRG-------FRN 728 (969)
Q Consensus 693 ---------------------------------~fspd~~~~l~sgs~Dg~I~IwD~~~~~----~~~~~-------~~~ 728 (969)
+|+|++ .+|++|+.|++|++||..... ..+.. ..|
T Consensus 409 ~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 409 AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 456766 799999999999999965421 11111 156
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 729 TSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...|.+++|+|||++||+|+.||+|+||++.+++
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 6789999999999999999999999999998753
No 47
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=2.1e-29 Score=277.87 Aligned_cols=272 Identities=18% Similarity=0.255 Sum_probs=219.0
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
....+.+|.+.|++++|+| +++|++|+.||.|++|++.+++....+ +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEE
Confidence 4457889999999999999 889999999999999999999988877 7999999999999 999999999999999999
Q ss_pred CCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 624 ISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 624 l~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
+.+++.+. +..|...|.+++|+|++++|++|+.|+.|++||+++++..... ..|...|.+++|+|++ .+|
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~l 164 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL--------PAHSDPVSAVHFNRDG-SLI 164 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTS-SEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe--------cCCCCcEEEEEEcCCC-CEE
Confidence 99887654 5567889999999999999999999999999999988754332 5678899999999988 799
Q ss_pred EEEeCCCcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCcee
Q 002086 703 LVTSADSRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQ 781 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~ 781 (969)
++++.|+.|++||.......... ..+...+..++|+|++++|++++.||.|++||+.++ +.......+.....
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKY 238 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------EEEEEECSSCCSSS
T ss_pred EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEEecCCceE
Confidence 99999999999998765443333 234567889999999999999999999999999873 32222221111100
Q ss_pred eeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccc
Q 002086 782 CKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSL 861 (969)
Q Consensus 782 ~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~ 861 (969)
+ .......+++.++++++.++.++.|...++.+...+..|...+.+
T Consensus 239 ~----------------------------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 239 C----------------------------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp C----------------------------------CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred E----------------------------------EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 0 001122356778899999999999998887777766666666665
Q ss_pred cccCCC
Q 002086 862 ISHDPG 867 (969)
Q Consensus 862 is~hP~ 867 (969)
+.+||.
T Consensus 285 ~~~~p~ 290 (312)
T 4ery_A 285 TACHPT 290 (312)
T ss_dssp EEECSS
T ss_pred EeecCc
Confidence 554443
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=2.7e-29 Score=277.22 Aligned_cols=248 Identities=15% Similarity=0.258 Sum_probs=209.6
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
....+|.+.|++++|+|++++|++++ ||.|+|||+.+++....
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~------------------------------------ 87 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP------------------------------------ 87 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC------------------------------------
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee------------------------------------
Confidence 33458999999999999999999999 99999999976432110
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCCeEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDYVTCI 600 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~V~sv 600 (969)
.......+|...|.+++|+| +++|++++.|+.|++||+.+++ ....+ .|...|.++
T Consensus 88 --------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~ 147 (337)
T 1gxr_A 88 --------------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147 (337)
T ss_dssp --------------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred --------------------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE
Confidence 00012237899999999999 7899999999999999999887 33333 788999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
+|+| ++.+|++++.||.|++||+++++..... .|...|.+++|+|++++|++++.||.|++||+++++....
T Consensus 148 ~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------ 220 (337)
T 1gxr_A 148 AISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ------ 220 (337)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------
T ss_pred EECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee------
Confidence 9999 8999999999999999999998766544 5778999999999999999999999999999998876543
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
..+...+.+++|+|++ .++++++.++.|++||...... .....+...+.+++|+|++++|++++.||.|++|++.
T Consensus 221 ---~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 221 ---HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ---EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ---ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 2356789999999998 7999999999999999776543 3455677889999999999999999999999999998
Q ss_pred CC
Q 002086 760 EH 761 (969)
Q Consensus 760 t~ 761 (969)
++
T Consensus 296 ~~ 297 (337)
T 1gxr_A 296 YG 297 (337)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 49
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=8.4e-31 Score=304.36 Aligned_cols=302 Identities=13% Similarity=0.146 Sum_probs=226.8
Q ss_pred ccccceeeeEecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
.+....+.....+|...|+||+|+| ++++||+|+.||+|+|||+.+++...
T Consensus 105 ~~~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~---------------------------- 156 (435)
T 4e54_B 105 TLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT---------------------------- 156 (435)
T ss_dssp TTTTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE----------------------------
T ss_pred cccceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee----------------------------
Confidence 3444556667889999999999999 56799999999999999987643221
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEee-
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA- 592 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~- 592 (969)
+..+.+|.+.|++|+|+| +++|++|+.||+|+|||+.++.......
T Consensus 157 -------------------------------~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 157 -------------------------------FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205 (435)
T ss_dssp -------------------------------EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred -------------------------------EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence 123568999999999997 6899999999999999998776555442
Q ss_pred --cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCc
Q 002086 593 --HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 593 --h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~ 669 (969)
+...+.+++|+| ++.+|++|+.||.|++||++...+..+..|...|++++|+|++. +|++|+.|+.|+|||++..+
T Consensus 206 ~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 206 DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 345688999999 99999999999999999999887777888899999999999886 77889999999999998866
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE--eecC----CCCeEEEEEeCCCCE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR--GFRN----TSSQISAAFNADGKY 743 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~--~~~~----~~~V~sl~fspdg~~ 743 (969)
..... .....|...|++++|+|++ .+|++++.|+.|+|||......... .+.+ ...+..+.|+|++.+
T Consensus 285 ~~~~~-----~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
T 4e54_B 285 GKASF-----LYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL 358 (435)
T ss_dssp SSSCC-----SBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred ccceE-----EEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE
Confidence 43221 1125688999999999988 7999999999999999765433222 2211 122345677777777
Q ss_pred EEEEeC------------CCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEccccc
Q 002086 744 IISASE------------DSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAK 811 (969)
Q Consensus 744 LaSgs~------------Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~ 811 (969)
+++++. ++.|++||+.++ +.+..+...+..
T Consensus 359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g------~~~~~l~~~~~~-------------------------------- 400 (435)
T 4e54_B 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSG------KMMCQLYDPESS-------------------------------- 400 (435)
T ss_dssp EEEECCCCTTSCCSSTTCCCCEEEECSSSC------CEEEEECCSSCC--------------------------------
T ss_pred EEEEEcCCCCeEEEEecCCCEEEEEECCCC------cEEEEEeCCCCC--------------------------------
Confidence 776642 357999998873 322222111110
Q ss_pred ccCCCCcccccCCCCCCccccCCCCccccCCCCCC
Q 002086 812 RISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTN 846 (969)
Q Consensus 812 ~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~ 846 (969)
.......++|++.++++++ +..+.+|....+
T Consensus 401 ---~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 401 ---GISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp ---CCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred ---cEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 0011234789998888765 678999987655
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=8.1e-30 Score=314.02 Aligned_cols=311 Identities=18% Similarity=0.252 Sum_probs=239.4
Q ss_pred ceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
+++...|++|.+.|++|+|++++ .+|+||+.|++|+||++.+....
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------------------------------- 418 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--------------------------------- 418 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------------------------------
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------------------------------
Confidence 34556799999999999999865 79999999999999998642110
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
.......+.+|...|.+++|++ +++|++|+.|++|+|||+.++.++..+ +|...|
T Consensus 419 -----------------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v 475 (694)
T 3dm0_A 419 -----------------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475 (694)
T ss_dssp -----------------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred -----------------------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCE
Confidence 0112346789999999999999 899999999999999999999988776 899999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe----cCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT----DLHEMVTAACYTPDG--QNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~~~~V~sv~fspdg--~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
.+++|+| ++.+|++|+.|++|++||+......... .|...|.+++|+|++ ..|++|+.|++|++||+++.+..
T Consensus 476 ~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 476 LSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp EEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 9999999 9999999999999999999876655443 466789999999987 58999999999999999987754
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
.. ..+|...|++++|+|++ .+|++++.|+.|++||..+....... .+...+.+++|+|++.+|++++ |+
T Consensus 555 ~~--------~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~~ 623 (694)
T 3dm0_A 555 ST--------LAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFSPNRYWLCAAT-EH 623 (694)
T ss_dssp EE--------ECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECC-BCSSCEEEEEECSSSSEEEEEE-TT
T ss_pred EE--------EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEe-cCCCcEEEEEEcCCCcEEEEEc-CC
Confidence 33 26789999999999988 89999999999999998876654443 4556799999999998888776 56
Q ss_pred cEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccc
Q 002086 752 QVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPA 831 (969)
Q Consensus 752 ~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~ 831 (969)
.|+|||+.+++. +........... .... . .+ . ...+..........+||++.++++
T Consensus 624 ~i~iwd~~~~~~------~~~~~~~~~~~~---~~~~--~----~~----~-----~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 624 GIKIWDLESKSI------VEDLKVDLKAEA---EKAD--N----SG----P-----AATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp EEEEEETTTTEE------EEEECCCCC----------------------------------CCCCEEEEEECTTSSEEEE
T ss_pred CEEEEECCCCCC------hhhhcccccccc---cccc--c----cc----c-----ccCCceeEEeeeEEEcCCCCEEEE
Confidence 699999997432 221111111000 0000 0 00 0 000000001124568999999999
Q ss_pred cCCCCccccCCC
Q 002086 832 GHSRRLLPPLPK 843 (969)
Q Consensus 832 ~~~~~~L~~~~~ 843 (969)
++.++.+..|..
T Consensus 680 gs~Dg~i~iW~i 691 (694)
T 3dm0_A 680 GYTDGVIRVWGI 691 (694)
T ss_dssp EETTSEEEEEEC
T ss_pred EcCCCeEEEEec
Confidence 999999999964
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.6e-31 Score=298.38 Aligned_cols=252 Identities=13% Similarity=0.149 Sum_probs=195.6
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.++.|.+.|++++|+|++++||+|+.|+.|+|||+.++....
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~-------------------------------------- 47 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH-------------------------------------- 47 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE--------------------------------------
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE--------------------------------------
Confidence 345678899999999999999999999999999998653111
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc----EEEEeecCCCeEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS----CLKLFAHNDYVTCI 600 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----~i~~~~h~~~V~sv 600 (969)
+..+.+|...|.+++|+| +++|++++.|++|++||+.+++ ......|...|.++
T Consensus 48 ---------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 48 ---------------------ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp ---------------------CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred ---------------------EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 114567999999999999 7899999999999999999887 33444899999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCce----EEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL-- 673 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~-- 673 (969)
+|+| ++.+|++++.|+.|++||++++. ...+.. |...|.+++|+|++++|++++.|+.|++||+........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999 99999999999999999999876 445555 789999999999999999999999999999964432110
Q ss_pred --------eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE----EEEeecCCCCeEEEEEeCCC
Q 002086 674 --------NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH----KFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 674 --------~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~----~~~~~~~~~~V~sl~fspdg 741 (969)
......... .|...|.+++|+|++ .+|++++.|+.|++||...... ......|...|.+++|+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 000111222 788999999999998 7999999999999999765433 33344567789999999999
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 002086 742 KYIISASEDSQVYVWKREE 760 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t 760 (969)
++|++|+.|+.+ +|+...
T Consensus 264 ~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEEEEESSSSEE-EECCCC
T ss_pred CEEEEEcCCcEE-EEEeCC
Confidence 999998866555 777764
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.4e-30 Score=289.22 Aligned_cols=258 Identities=17% Similarity=0.313 Sum_probs=210.6
Q ss_pred ccccceeeeEecc-----cccCEEEEEEeCC----CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCC
Q 002086 437 DLSALHLCQEIQA-----HEGSIWTIKFSLD----ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKA 507 (969)
Q Consensus 437 dl~~~~l~~~L~g-----H~~~I~~l~fSpD----g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~ 507 (969)
++...+.+..++. |.+.|++++|+|+ +++|++|+.||.|+|||+.+++.+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------------------- 109 (366)
T 3k26_A 50 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK-------------------- 109 (366)
T ss_dssp EECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE--------------------
T ss_pred EcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee--------------------
Confidence 3343344444443 6688999999999 6799999999999999998765543
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC
Q 002086 508 SSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK 585 (969)
Q Consensus 508 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~ 585 (969)
.+.+|...|.+++|+| +.+|++|+.||.|++||+.++
T Consensus 110 -----------------------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 110 -----------------------------------------HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp -----------------------------------------EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred -----------------------------------------eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 5667999999999998 589999999999999999999
Q ss_pred cEEEEe----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-----------------------------E
Q 002086 586 SCLKLF----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-----------------------------W 632 (969)
Q Consensus 586 ~~i~~~----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-----------------------------~ 632 (969)
+.+..+ .|...|.+++|+| ++.+|++++.||.|++||+++++... .
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred eEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 998887 6999999999999 99999999999999999998764332 1
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee------eeeeecccccCCCCCeEEEEEcCC--CCceEEE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL------NQVDFQTKKKSSTRKITGFQFSPS--NPSEVLV 704 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~------~~~~~~~~~~~h~~~It~l~fspd--~~~~l~s 704 (969)
..+...|.+++|+ +++|++++.||.|++||+.+...... ...........|...|.+++|+|+ + .+|++
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~ 304 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLAL 304 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEE
Confidence 2277889999999 77999999999999999987654110 000112223567888999999998 6 89999
Q ss_pred EeCCCcEEEEeCCcc------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 705 TSADSRIRILDGLDI------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
++.|+.|++||.... ...+..+.+...|.+++|+|++++|++++.||.|+|||+.
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999997652 2244445457899999999999999999999999999985
No 53
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=275.34 Aligned_cols=289 Identities=19% Similarity=0.310 Sum_probs=230.9
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
...++.++|.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..+...+..+.+.+........+....
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-- 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM-- 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC--
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe--
Confidence 456788899999999999999 99999999999999999999999888877766666666665554332221111100
Q ss_pred cccccCCCCCCCCcccccceeeec----CCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ec
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSL----SEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AH 593 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~----~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h 593 (969)
..+|.+ ..+++..+.+|...|.++.|. +++|++++.|+.|++|| .++.+..+ .|
T Consensus 83 ------------------i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 83 ------------------INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ------------------EEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred ------------------EEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 011111 234566788999999999994 68999999999999999 55555555 79
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
...|.+++|.|.++++|++++.||.|++||... ....+.. +...+.+++|+|++. +++++.||.|++||+++++...
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~ 219 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDK-VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR 219 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEecCc-eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh
Confidence 999999999987889999999999999999433 3333344 778999999999988 9999999999999999887654
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
.. ..|...|++++|+|++ .|++++.|+.|++||............+...|.+++|+|+++ +++++.||.
T Consensus 220 ~~--------~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 220 TY--------EGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp EE--------ECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred hh--------hcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc
Confidence 32 5688999999999987 599999999999999877665555556677899999999998 667999999
Q ss_pred EEEEEcCCCCcc
Q 002086 753 VYVWKREEHRNA 764 (969)
Q Consensus 753 I~IWdl~t~~~~ 764 (969)
|++|++.+++..
T Consensus 289 i~iw~~~~~~~~ 300 (313)
T 3odt_A 289 VRIFSQEKSRWA 300 (313)
T ss_dssp EEEEESCGGGCC
T ss_pred EEEEeCCCCcee
Confidence 999999985443
No 54
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-29 Score=278.59 Aligned_cols=251 Identities=15% Similarity=0.243 Sum_probs=213.3
Q ss_pred cccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+...+.+..+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+.
T Consensus 61 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------------------------ 110 (369)
T 3zwl_B 61 SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA------------------------------ 110 (369)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE------------------------------
T ss_pred CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------
Confidence 33344556678999999999999999999999999999999998776554
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC-----CcEEEEECCCCcE----
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD-----KTVRLWDMETKSC---- 587 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D-----gtV~IWDl~t~~~---- 587 (969)
.+. |...|.+++|++ +.+|++++.+ +.|++||+..+..
T Consensus 111 -------------------------------~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 111 -------------------------------TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp -------------------------------EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred -------------------------------Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 222 778899999999 8999999999 9999999976532
Q ss_pred --------EEEeecCC--CeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEE-EEecCCCCEEEEEEccCCCEEEEEe
Q 002086 588 --------LKLFAHND--YVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVV-DWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 588 --------i~~~~h~~--~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~-~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
.....|.. .+.+++|+| ++.+|++++.||.|++||+.+ ...+ .+..+...|.+++|+|++.+|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 12234555 999999999 999999999999999999998 4544 4556788999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC--------------cEEEEeCCcceE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--------------RIRILDGLDIVH 721 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--------------~I~IwD~~~~~~ 721 (969)
.||.|++||+.+++..... .+...+..++|+|++ .++++++.++ .|++||......
T Consensus 238 ~d~~i~v~d~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKY---------ETDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp TTSEEEEEETTTCCEEEEE---------ECSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred CCceEEEEECCCCceeeee---------cCCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 9999999999988765442 256789999999998 7888888887 899999877666
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
......|...|.+++|+|++++|++++.||.|+||+++++
T Consensus 308 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 6666667889999999999999999999999999999874
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=7.4e-30 Score=289.75 Aligned_cols=299 Identities=17% Similarity=0.205 Sum_probs=227.0
Q ss_pred cccccceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeec--CCccCcccccccCCCCCccCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSE--GNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~--~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+++..+++...+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. ++...+..+.+.+.+....+.+
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 3556777888999999999999999999 899999999999999999887766554 4555555555544211111111
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccC---CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGH---LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL 588 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH---~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i 588 (969)
. ......+|......+..+..| ...|.+++|++ +.+|++|+.|+.|++||+. ++++
T Consensus 138 ~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 197 (383)
T 3ei3_B 138 S-------------------IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI 197 (383)
T ss_dssp E-------------------TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE
T ss_pred e-------------------CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE
Confidence 0 011224555555556566544 48899999999 8999999999999999995 5555
Q ss_pred EEe-ecCCCeEEEEEecCCCC-EEEEEECCCeEEEEeCCC----ceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 002086 589 KLF-AHNDYVTCIQFNPMDDD-YFISGSLDAKVRIWSISD----RLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCR 661 (969)
Q Consensus 589 ~~~-~h~~~V~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~----~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~ 661 (969)
..+ .|...|.+++|+| ++. +|++++.|+.|++||+++ +.++....+...|.+++|+| ++.+|++++.|+.|+
T Consensus 198 ~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 555 7999999999999 777 999999999999999987 66777778999999999999 999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCC----------CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEEeecCC
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSS----------TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFRGFRNT 729 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h----------~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~ 729 (969)
+||+++++......... .....+ ...+..++|+|++ .+ +++.|+.|++||..... ..+..+.+.
T Consensus 277 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHP-HRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp EEETTBTTSCSEEEECC-BCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred EEECCCCcccccccccc-ccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 99999877543322110 000112 2345556777766 33 77899999999976544 444444456
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+..++|+|++++|++|+ ||.|+|||+++
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 6677789999999999997 99999999975
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-30 Score=296.13 Aligned_cols=258 Identities=15% Similarity=0.212 Sum_probs=205.2
Q ss_pred cceeeeEe-cccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 440 ALHLCQEI-QAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 440 ~~~l~~~L-~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
..+++.+| .+|.+.|++|+|+| ++++||||+.||+|+|||+.+.+....
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----------------------------- 101 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV----------------------------- 101 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-----------------------------
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-----------------------------
Confidence 35677788 99999999999999 999999999999999999875210000
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC---CCcEEEEee-
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME---TKSCLKLFA- 592 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~---t~~~i~~~~- 592 (969)
.+....+ +|...|.+++|++ +.+|++|+.||+|++||+. +++++..+.
T Consensus 102 --------------------------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 154 (437)
T 3gre_A 102 --------------------------YSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC 154 (437)
T ss_dssp --------------------------CSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE
T ss_pred --------------------------cceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc
Confidence 0001122 5999999999999 8899999999999999994 555554331
Q ss_pred ------------cCCCeEEEE--EecCCCCEEEEEECCCeEEEEeCCCceEEEEec---CCCCEEEEEEccCCCEEEEEe
Q 002086 593 ------------HNDYVTCIQ--FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---LHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 593 ------------h~~~V~sv~--fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~~~V~sv~fspdg~~Lasgs 655 (969)
+...+.++. +++ ++.+|++++.|+.|++||+++++.+..+. |...|++++|+|++.+|++|+
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 155 ECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred ceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 566777777 446 78899999999999999999987765443 578999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC---CCceEEEEeCCCcEEEEeCCcce--EEEEeec---
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS---NPSEVLVTSADSRIRILDGLDIV--HKFRGFR--- 727 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd---~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~--- 727 (969)
.||.|++||++.++...... ..|...|.+++|+|. +..+|++++.|+.|++||..... ..+..+.
T Consensus 234 ~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSWS-------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp TTSCEEEEETTTTEEEEEEB-------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred CCCeEEEEEcCCccEEEEEe-------cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 99999999999877654321 256678999977763 22689999999999999976543 3333221
Q ss_pred ---------------------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 728 ---------------------NTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 728 ---------------------~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+...|.+++|+ ++++|++|+.||.|++||+.+++
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 55568899999 88999999999999999999843
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.9e-31 Score=300.65 Aligned_cols=337 Identities=13% Similarity=0.218 Sum_probs=245.9
Q ss_pred CCcceeeeecccccc-cccCC----------CCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCc
Q 002086 337 HSPVVKELMRRENVN-RINDS----------AGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPL 405 (969)
Q Consensus 337 Hs~~V~~l~~~~~~~-~~~t~----------s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l 405 (969)
+...|.++++..+.. .++++ +.|..+..|........+. ...+ .......++.|+++...++..
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~-- 85 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--IASL-QVDSKFNDLDWSHNNKIIAGA-- 85 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--SCCC-CCSSCEEEEEECSSSSCEEEE--
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--EEEE-ecCCceEEEEECCCCCeEEEE--
Confidence 345678888766543 66666 6677777665432221111 1111 123445555566555442221
Q ss_pred ccchHHHHHHhhccccCcceEEEccCCCccccccc----ceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEec
Q 002086 406 LGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSA----LHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEV 480 (969)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~----~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl 480 (969)
..++.+.++ ++.. .+.+..+.+|.+.|++++|+|+ +++|++++.|+.|+|||+
T Consensus 86 -------------~~dg~v~vw---------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 86 -------------LDNGSLELY---------STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp -------------ESSSCEEEE---------CCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred -------------ccCCeEEEe---------ecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 122233322 3333 3477889999999999999998 899999999999999999
Q ss_pred ccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEE
Q 002086 481 QECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDL 560 (969)
Q Consensus 481 ~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l 560 (969)
.+++..... . ....+..+.+|...|.++
T Consensus 144 ~~~~~~~~~-----------------------------~-----------------------~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 144 NKCTESPSN-----------------------------Y-----------------------TPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp TTTSSCTTT-----------------------------C-----------------------CCBCCCCSCCSSCCCCEE
T ss_pred CCCcccccc-----------------------------c-----------------------cccccccccCCCCCeeEE
Confidence 865410000 0 000001235689999999
Q ss_pred EecC--CcEEEEEeCCCcEEEEECCCCcEEEEee-c------CCCeEEEEEecCCCCEEEEEECCC---eEEEEeCCCc-
Q 002086 561 SWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA-H------NDYVTCIQFNPMDDDYFISGSLDA---KVRIWSISDR- 627 (969)
Q Consensus 561 ~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h------~~~V~sv~fsp~~~~~L~sgs~Dg---~I~IWDl~~~- 627 (969)
+|++ +.+|++++.|+.|++||+.+++++..+. + ...|.+++|+|....+|++++.|+ .|++||++++
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 9998 4799999999999999999999988873 3 789999999993347999999999 9999999985
Q ss_pred eEEE-Ee-cCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 628 LVVD-WT-DLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 628 ~~~~-~~-~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
..+. +. .|...|.+++|+| ++.+|++++.||.|++||+.+++..... ..|...|.+++|+|+++.+|++
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF--------PARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE--------ECSSSCCCCEEECTTCTTEEEE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee--------cCCCCceEEEEECCCCCCEEEE
Confidence 4443 33 5888999999999 9999999999999999999988765432 4678899999999998789999
Q ss_pred EeCCCcEEEEeCCcceEEEE----------------ee-------------------cCCCCeEEEEEeCCCCEEEEEeC
Q 002086 705 TSADSRIRILDGLDIVHKFR----------------GF-------------------RNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~~~~~----------------~~-------------------~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
++.|+.|++||+........ .+ .+...+.+++|+|||++|++++.
T Consensus 324 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC
Confidence 99999999999654321100 00 03456778999999999999999
Q ss_pred CCcEEEEEcCC
Q 002086 750 DSQVYVWKREE 760 (969)
Q Consensus 750 Dg~I~IWdl~t 760 (969)
|+.|+||++.+
T Consensus 404 d~~v~~w~~~~ 414 (416)
T 2pm9_A 404 GKGVSITNPKI 414 (416)
T ss_dssp SSCBCCBCCCC
T ss_pred CCeEEEEEecc
Confidence 99999999986
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-30 Score=291.51 Aligned_cols=324 Identities=12% Similarity=0.146 Sum_probs=239.1
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|.+.|++++|+|++++|++|+.||.|+|||+.+...
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~------------------------------------------- 101 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN------------------------------------------- 101 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------------------------------
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------------------------------
Confidence 5899999999999999999999999999999875110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc------EEEE----eecCCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS------CLKL----FAHNDY 596 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~------~i~~----~~h~~~ 596 (969)
..+.+..+.+|...|.+++|+| +.+|++++.|++|++||+.+++ .... ..|...
T Consensus 102 --------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 102 --------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp --------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred --------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 0112346778999999999998 5899999999999999999886 3322 378999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-------CCCEEEEEEccCC-CEEEEEeCCC---cEEEEEc
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-------HEMVTAACYTPDG-QNALIGSHKG---SCRLYSI 665 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-------~~~V~sv~fspdg-~~Lasgs~dg---~I~IwDl 665 (969)
|.+++|+|..+.+|++++.||.|++||+++++.+..... ...|.+++|+|++ .+|++++.++ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999993378999999999999999999887665544 6789999999997 6899999998 9999999
Q ss_pred CCCceeeeeeeeeccccc-CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC-CE
Q 002086 666 EDSKLHQLNQVDFQTKKK-SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG-KY 743 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~-~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg-~~ 743 (969)
++.... ..... .|...|.+++|+|.++.+|++++.|+.|++||............|...|.+++|+|++ .+
T Consensus 248 ~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 248 RNANTP-------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp TSTTSC-------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred CCCCCC-------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence 986321 11124 6889999999999444899999999999999987766655566677889999999999 89
Q ss_pred EEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCc-cccc
Q 002086 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPT-SATS 822 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~-~~~~ 822 (969)
|++++.||.|+||++.+............ ........+... -..+..+..... +.+ ....-...++ ..++
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETET----KQQESETDFWNN--VSREESKEKPSV--FHL-QAPTWYGEPSPAAHW 391 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------------CCSCCCS--SCC-CCCSTTCCCSCCCEE
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccc----cccCCccccccc--cccccccccccc--ccc-cCCccccCCccceEE
Confidence 99999999999999998654433211000 000000000000 000000100011 111 1111112233 6789
Q ss_pred CCCCCCccccCCCCccccCCCCC
Q 002086 823 SPTKEGSPAGHSRRLLPPLPKKT 845 (969)
Q Consensus 823 SP~~~~i~~~~~~~~L~~~~~~s 845 (969)
||+|.++++++.++.+.+|...+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999997654
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=9.9e-30 Score=288.93 Aligned_cols=295 Identities=13% Similarity=0.166 Sum_probs=228.2
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce------EEEeecCCccCcccccccCC----C---CCc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE------VMSMSEGNLTPIHPSLCNSS----D---KAS 508 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~------~l~~~~~~~~~v~~~~~~~~----~---~~~ 508 (969)
.....+.+|.+.|++|+|+| ++|++|+.||+|+|||+.+++ .+..+.++...+..+.+.+. . ...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677899999999999998 899999999999999999887 56666666666665555543 2 111
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCC-Cc-----eeEeccC-----CCCEEEEEec----C-CcE-EEEE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSE-KP-----FCSFIGH-----LDDVLDLSWS----R-SHL-LLSS 571 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-k~-----~~~l~gH-----~~~I~~l~fs----~-~~~-L~Sg 571 (969)
...+. .....+|.... +. +..+.+| ...|.+++|+ + +.+ |+++
T Consensus 85 ~s~~~--------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 85 ATTSF--------------------SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp EEEET--------------------TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred EEEcC--------------------CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 11110 01112333322 22 6778888 5999999999 8 788 9999
Q ss_pred eCCCcEEEEECCC------CcEEE-----Ee--------ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 572 SMDKTVRLWDMET------KSCLK-----LF--------AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 572 s~DgtV~IWDl~t------~~~i~-----~~--------~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
+.||.|++||+.+ ++.+. .+ .|...|.+++|+| ++ +|++++.||.|++||+++++.+..
T Consensus 145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEE
Confidence 9999999999988 55443 33 3789999999999 78 999999999999999998877655
Q ss_pred ec----C---CCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeee-----cccccCCCCCeEEEEEcCC
Q 002086 633 TD----L---HEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKLHQLNQVDF-----QTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 633 ~~----~---~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~~~~~~~~~-----~~~~~~h~~~It~l~fspd 697 (969)
+. | ...|.+++|+|++.+|++++.| |.|++||+.+++......... ......|...|.+++|+|+
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC
Confidence 44 5 8899999999999999999999 999999999887654321100 0000117889999999998
Q ss_pred CCceEEEEeCCCcEEEEeCCcceEEEEee------cC---------------CCCeEEEEEeCCC----------CEEEE
Q 002086 698 NPSEVLVTSADSRIRILDGLDIVHKFRGF------RN---------------TSSQISAAFNADG----------KYIIS 746 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~------~~---------------~~~V~sl~fspdg----------~~LaS 746 (969)
+ .+|++++.|+.|++||........... .+ ...|.+++|+|+| ++|++
T Consensus 303 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 303 G-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp S-SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred C-CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 8 799999999999999987665544444 45 7889999999998 79999
Q ss_pred EeCCCcEEEEEcCCC
Q 002086 747 ASEDSQVYVWKREEH 761 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~ 761 (969)
++.||.|+||++.++
T Consensus 382 ~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 382 VCLDRSIRWFREAGG 396 (397)
T ss_dssp EETTTEEEEEEEEC-
T ss_pred ecCCCcEEEEEcCCC
Confidence 999999999999873
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=2.4e-30 Score=295.23 Aligned_cols=303 Identities=19% Similarity=0.252 Sum_probs=228.3
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
..+.||...|+++++..+...+++++.|..+..|.... ......++.....+..+.|+++...++..
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-----~~~~~~~~~h~~~v~~~~~s~~g~~las~-------- 126 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-----SQKTHAIKLHCPWVMECAFAPNGQSVACG-------- 126 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-----TEEEEEEECCCTTCCCCEECTTSSEEEEC--------
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CccceEEecCCCCEEEEEECCCCCEEEEe--------
Confidence 55689999999999888888899999999888876432 21112222222333444555555443322
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..+..+.++...... ..-........+.+|.+.|.++.|+|+ +.+|+||+.|++|+|||+.+++.+..+.
T Consensus 127 -------~~d~~v~iw~~~~~~--~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 197 (380)
T 3iz6_a 127 -------GLDSACSIFNLSSQA--DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG 197 (380)
T ss_dssp -------CSSSCCEEEECCCCS--SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC
T ss_pred -------eCCCcEEEEECCCCc--cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEee
Confidence 123333333322111 111223345678999999999999997 4579999999999999999887765332
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLL 568 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L 568 (969)
.. ...+|...|.++.|++ +++|
T Consensus 198 ~~--------------------------------------------------------~~~~h~~~v~~~~~~~~~~~~l 221 (380)
T 3iz6_a 198 SE--------------------------------------------------------FPSGHTADVLSLSINSLNANMF 221 (380)
T ss_dssp CC--------------------------------------------------------SSSSCCSCEEEEEECSSSCCEE
T ss_pred cc--------------------------------------------------------cCCCCccCeEEEEeecCCCCEE
Confidence 10 1246899999999986 6899
Q ss_pred EEEeCCCcEEEEECC-CCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--------CC
Q 002086 569 LSSSMDKTVRLWDME-TKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--------EM 638 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~-t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--------~~ 638 (969)
++|+.|++|++||++ .++++..+ +|...|.+++|+| ++.+|++|+.||+|++||++++..+..+... ..
T Consensus 222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 999999999999998 44666655 8999999999999 9999999999999999999998877654332 24
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 639 VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
|++++|+|+|++|++|+.||.|++||+..++..... ......|...|++++|+|++ .+|++|+.|++|+||+...
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~----~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL----GTLQNSHEGRISCLGLSSDG-SALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE----CCSCSSCCCCCCEEEECSSS-SEEEEECTTSCEEEEECCS
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE----ecccCCCCCceEEEEECCCC-CEEEEeeCCCCEEEEecCC
Confidence 899999999999999999999999999887754332 12225789999999999998 7999999999999999653
No 61
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.1e-29 Score=291.15 Aligned_cols=253 Identities=15% Similarity=0.148 Sum_probs=207.1
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++...+....+..| ..+....|++++++||+|+.|+.|+|||+.+++...
T Consensus 84 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------- 133 (420)
T 3vl1_A 84 NTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE----------------------------- 133 (420)
T ss_dssp ECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-----------------------------
T ss_pred EecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-----------------------------
Confidence 44444455556666 555666789999999999999999999998765543
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
.+.+|.+.|.+++|+| +.+|++|+.|++|++||+.+++++..+ +|.
T Consensus 134 --------------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 181 (420)
T 3vl1_A 134 --------------------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR 181 (420)
T ss_dssp --------------------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS
T ss_pred --------------------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC
Confidence 3457999999999999 789999999999999999999888777 699
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec----CCCCEEEEE---------------------EccCCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD----LHEMVTAAC---------------------YTPDGQ 649 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~----~~~~V~sv~---------------------fspdg~ 649 (969)
..|.+++|+| ++.+|++++.||.|++||+++++.+..+. +...+.+++ |+|+++
T Consensus 182 ~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (420)
T 3vl1_A 182 ATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK 260 (420)
T ss_dssp SCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred CcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence 9999999999 89999999999999999999988776554 334455544 578899
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEee
Q 002086 650 NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGF 726 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~ 726 (969)
+|++|+.||.|++||+++++..... ...|...|.+++|+|++..+|++++.|+.|++||.... ...+..+
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKEQTIQL-------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE-------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred EEEEEcCCCeEEEEECCCCceeEEc-------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence 9999999999999999988754332 14678899999999998559999999999999997653 3344332
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 727 RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+...+.++ +.+++++|++++.||.|++|++..+
T Consensus 334 -~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 334 -EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCceEE-EeCCCCEEEEecCCccEEEEeccCC
Confidence 45567777 4558889999999999999999874
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=7.7e-29 Score=288.84 Aligned_cols=302 Identities=18% Similarity=0.317 Sum_probs=243.1
Q ss_pred eeeEecccccCE-EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQAHEGSI-WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~gH~~~I-~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
....|.+|.+.| .++.| ++++|++|+.||+|++||+.+++.+.
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---------------------------------- 156 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---------------------------------- 156 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE----------------------------------
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE----------------------------------
Confidence 456789999885 66666 57899999999999999998876554
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
.+.+|.+.|++++|+++.+|++|+.||+|++||+.+++++..+ +|...|.++
T Consensus 157 ---------------------------~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 209 (464)
T 3v7d_B 157 ---------------------------QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209 (464)
T ss_dssp ---------------------------EECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred ---------------------------EEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence 5668999999999999779999999999999999999998888 699999999
Q ss_pred EEec-CCCCEEEEEECCCeEEEEeCCCce------------------------EEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 601 QFNP-MDDDYFISGSLDAKVRIWSISDRL------------------------VVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 601 ~fsp-~~~~~L~sgs~Dg~I~IWDl~~~~------------------------~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
+|++ .++.+|++|+.||.|++||+.++. ......|...+.++ ++++.++++|+
T Consensus 210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~ 287 (464)
T 3v7d_B 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS 287 (464)
T ss_dssp EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence 9995 266899999999999999998764 23455566777766 67889999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISA 735 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl 735 (969)
.||.|++||+.+++..... ..|...|.+++|+|++ ..+++++.|+.|++||..+.........|...|.++
T Consensus 288 ~d~~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 358 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYIL--------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358 (464)
T ss_dssp TTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCeEEEEECCCCcEEEEe--------cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 9999999999988765432 5688999999999988 799999999999999988776666666778889999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCC
Q 002086 736 AFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISS 815 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~ 815 (969)
.|+ +.+|++++.||.|++||+.+++ ...... +. .
T Consensus 359 ~~~--~~~l~s~s~dg~v~vwd~~~~~------~~~~~~--~~------------------------------------~ 392 (464)
T 3v7d_B 359 RLS--DKFLVSAAADGSIRGWDANDYS------RKFSYH--HT------------------------------------N 392 (464)
T ss_dssp EEC--SSEEEEEETTSEEEEEETTTCC------EEEEEE--CT------------------------------------T
T ss_pred EEc--CCEEEEEeCCCcEEEEECCCCc------eeeeec--CC------------------------------------C
Confidence 997 5899999999999999998732 111110 00 0
Q ss_pred CCcccccCCCCCCccccCCCCccccCCCCCCccccC-CCCCCCCccccccC
Q 002086 816 NPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERV-PSPPEEELSLISHD 865 (969)
Q Consensus 816 ~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~-l~~pee~l~~is~h 865 (969)
.....+++|++.++++++ ++.+..|...++.+... ...+...+.++.++
T Consensus 393 ~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 393 LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 112234566676777766 78899999888877764 55667777777765
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=9.5e-29 Score=283.36 Aligned_cols=321 Identities=15% Similarity=0.139 Sum_probs=239.9
Q ss_pred cceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhc
Q 002086 339 PVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQN 418 (969)
Q Consensus 339 ~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~ 418 (969)
..++.+++..+...+++++.+..+..|.....+... .+... .+.....+.++...+...
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~--------------- 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-----MLKRA-DYTAVDTAKLQMRRFILG--------------- 115 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-----TSCSC-CEEEEEEECSSSCEEEEE---------------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee-----EEecC-CceEEEEEecCCCEEEEE---------------
Confidence 335577777777788888888877777543322211 11111 222222334443322111
Q ss_pred cccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCccc
Q 002086 419 KNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHP 498 (969)
Q Consensus 419 ~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~ 498 (969)
..++.+ .+|++...+....+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.+
T Consensus 116 ~~dg~i---------~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~------------ 174 (420)
T 3vl1_A 116 TTEGDI---------KVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP------------ 174 (420)
T ss_dssp ETTSCE---------EEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC------------
T ss_pred ECCCCE---------EEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc------------
Confidence 122222 24466677788888999999999999999999999999999999999865432
Q ss_pred ccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcE
Q 002086 499 SLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTV 577 (969)
Q Consensus 499 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV 577 (969)
..+.+|...|.+++|+| +.+|++++.|++|
T Consensus 175 -------------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 175 -------------------------------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp -------------------------------------------------EEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred -------------------------------------------------eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 25678999999999999 8899999999999
Q ss_pred EEEECCCCcEEEEe----ecCCCeEEEEE---------------------ecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 578 RLWDMETKSCLKLF----AHNDYVTCIQF---------------------NPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 578 ~IWDl~t~~~i~~~----~h~~~V~sv~f---------------------sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
++||+.+++++..+ .|...|.+++| +| ++.+|++|+.||.|++||+++++....
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 99999999998887 35556666665 56 788999999999999999998875544
Q ss_pred e--cCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCce-eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 633 T--DLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKL-HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 633 ~--~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~-~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
. .+...|.+++|+|++. +|++|+.||.|++||+++++. .... ...+...|.++.+. ++ .+|++++.|
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~~-~~-~~l~s~~~d 355 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF-------LINEGTPINNVYFA-AG-ALFVSSGFD 355 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-------EESTTSCEEEEEEE-TT-EEEEEETTT
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh-------hccCCCCceEEEeC-CC-CEEEEecCC
Confidence 3 3567899999999999 999999999999999998753 2111 13367788888665 45 699999999
Q ss_pred CcEEEEeCCcc---------eEEEEeecCCCCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCC
Q 002086 709 SRIRILDGLDI---------VHKFRGFRNTSSQISAAFNADGK---YIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 g~I~IwD~~~~---------~~~~~~~~~~~~V~sl~fspdg~---~LaSgs~Dg~I~IWdl~t 760 (969)
+.|++|++... ........+...|.+++|+|++. .|++.+.+|.+.+|++++
T Consensus 356 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 356 TSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 99999995431 11122345667899999999999 788888899999999975
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2.4e-29 Score=280.35 Aligned_cols=294 Identities=13% Similarity=0.151 Sum_probs=223.2
Q ss_pred eEecccccCEEEEEEeCCCCE-EEEEeC---CCcEEEEecccceEEEeec-CCccCcccccccCCC--CCccCCCCCCCC
Q 002086 445 QEIQAHEGSIWTIKFSLDARF-LASAGE---DRVIHVWEVQECEVMSMSE-GNLTPIHPSLCNSSD--KASSLDGSSPNP 517 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~-LaTgs~---DgtVrIWDl~tg~~l~~~~-~~~~~v~~~~~~~~~--~~~~~~g~~~~~ 517 (969)
..+++|.+.|++++|+|++.. +++|+. |+.|+|||+.+++...... ++...+..+.+.+.. ....+.+..
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--- 88 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF--- 88 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET---
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC---
Confidence 456789999999999999964 456665 9999999999887654322 344445544444431 111111110
Q ss_pred CcccccCCCCCCCCcccccceeeecCC-C-ceeEeccCCCCEEEEEe------cC-CcEEEEEeCCCcEEEEECCCCc-E
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSE-K-PFCSFIGHLDDVLDLSW------SR-SHLLLSSSMDKTVRLWDMETKS-C 587 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-k-~~~~l~gH~~~I~~l~f------s~-~~~L~Sgs~DgtV~IWDl~t~~-~ 587 (969)
.....+|.... + ++..+.+|...|.++.| ++ +.+|++++.||.|++||+.+++ .
T Consensus 89 ----------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 89 ----------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp ----------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred ----------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc
Confidence 11123344332 2 57788999999999965 55 7899999999999999999887 5
Q ss_pred EEEe-ecC----CCeEEEE----EecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEcc---CCCEEEEEe
Q 002086 588 LKLF-AHN----DYVTCIQ----FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP---DGQNALIGS 655 (969)
Q Consensus 588 i~~~-~h~----~~V~sv~----fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp---dg~~Lasgs 655 (969)
+..+ .|. ..|.+++ |+| ++.+|++++.||.|++||+++++......+...|.+++|+| ++.+|++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 5555 333 3899999 667 89999999999999999999999888888999999999999 999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc----------------
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---------------- 719 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---------------- 719 (969)
.||.|++||+++++........ ....|...|++++|+|++..+|++++.|+.|++||....
T Consensus 232 ~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 232 LEGKFHVFDMRTQHPTKGFASV---SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp STTEEEEEEEEEEETTTEEEEE---EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred CCCeEEEEeCcCCCcccceeee---ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence 9999999999876543222110 124788999999999998448999999999999995421
Q ss_pred ---eEEEEeecCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCCC
Q 002086 720 ---VHKFRGFRNTSSQISAAFNADGKYII-SASEDSQVYVWKREEH 761 (969)
Q Consensus 720 ---~~~~~~~~~~~~V~sl~fspdg~~La-Sgs~Dg~I~IWdl~t~ 761 (969)
........|...|.+++|+|++++|+ +++.||.|+|||+.+.
T Consensus 309 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 309 GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 23334455778899999999999998 8999999999999874
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=4.9e-29 Score=279.93 Aligned_cols=252 Identities=15% Similarity=0.233 Sum_probs=208.5
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+..|.++|++++|+|++++|++|+.|+.|+|||+.+++..
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---------------------------------------- 43 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------------------------- 43 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE----------------------------------------
Confidence 4569999999999999999999999999999999876521
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEE---eecCCCeEEEEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKL---FAHNDYVTCIQF 602 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~---~~h~~~V~sv~f 602 (969)
.+..+.+|...|.+++|+| +++|++++.||.|++||+.+++.... ..|...|.+++|
T Consensus 44 -------------------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 104 (372)
T 1k8k_C 44 -------------------QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104 (372)
T ss_dssp -------------------EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE
T ss_pred -------------------eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEE
Confidence 1225678999999999999 89999999999999999999886544 379999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCce----EEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee----
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRL----VVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL---- 673 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~---- 673 (969)
+| ++.+|++++.|+.|++||+..+. .... ..|...|.+++|+|++++|++++.||.|++||+........
T Consensus 105 ~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 105 AP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp CT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred CC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 99 89999999999999999998865 2223 45678899999999999999999999999999752211000
Q ss_pred ------eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 674 ------NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 674 ------~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
...........|...|.+++|+|++ .+|++++.|+.|++||............+...|.+++|+|++.+|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred ccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence 0000111224788899999999988 799999999999999987655555555667789999999999988888
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
.|+.|++|++.+
T Consensus 263 -~d~~i~i~~~~~ 274 (372)
T 1k8k_C 263 -HDCFPVLFTYDS 274 (372)
T ss_dssp -TTSSCEEEEEET
T ss_pred -eCCeEEEEEccC
Confidence 899999999987
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=1e-28 Score=308.11 Aligned_cols=428 Identities=13% Similarity=0.112 Sum_probs=305.9
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
...+.||+..|.++++..+...+++++.++.+..|.... ......+....+...++.|+++...+...
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------- 73 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET-----QVEVRSIQVTETPVRAGKFIARKNWIIVG------- 73 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----TEEEEEEECCSSCEEEEEEEGGGTEEEEE-------
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC-----CceEEEEecCCCcEEEEEEeCCCCEEEEE-------
Confidence 456789999999999888888888888888777775332 22222333334445555555555432221
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..++.+. +|++.+.+.+.++.+|.+.|++++|+|++++|++|+.||+|++||+.++...
T Consensus 74 --------~~dg~i~---------vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~---- 132 (814)
T 3mkq_A 74 --------SDDFRIR---------VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL---- 132 (814)
T ss_dssp --------ETTSEEE---------EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE----
T ss_pred --------eCCCeEE---------EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE----
Confidence 1223333 3356667788889999999999999999999999999999999999865221
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLL 568 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L 568 (969)
...+.+|...|.+++|+| +..|
T Consensus 133 --------------------------------------------------------~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 133 --------------------------------------------------------EQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp --------------------------------------------------------EEEEECCSSCEEEEEEETTEEEEE
T ss_pred --------------------------------------------------------EEEEcCCCCcEEEEEEEcCCCCEE
Confidence 125668999999999998 5799
Q ss_pred EEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC-CCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEE
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM-DDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACY 644 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~f 644 (969)
++++.||+|++||+.++.....+ .+...|.+++|+|. ++.+|++++.||.|++||+.++..+.. ..|...|.+++|
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 99999999999999888766655 45589999999973 577999999999999999998876654 457789999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE---
Q 002086 645 TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--- 721 (969)
Q Consensus 645 spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--- 721 (969)
+|++.+|++++.||.|++||+.+++..... ..+...+.+++|+|++...+++++.++.+.+|+......
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTL--------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLS 308 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEE--------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeE
Confidence 999999999999999999999988765432 456789999999999866556677788888888442111
Q ss_pred -------EEE---------------------------------eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 722 -------KFR---------------------------------GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 722 -------~~~---------------------------------~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
... ...+...+.+++|+|+|++|++++ |+.+.+|++...
T Consensus 309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 309 LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp ECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred ECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc
Confidence 110 011233567999999999999998 899999998652
Q ss_pred CccCCCceeEEecccCCceeeeeeEEeecCCCcccC-CCCCccEEEcccccccCCCCcccccCCCC---CCccccCCCCc
Q 002086 762 RNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKG-EPPPTPVQTKKHAKRISSNPTSATSSPTK---EGSPAGHSRRL 837 (969)
Q Consensus 762 ~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G-~~~~~~v~~~~~~~~~~~~~~~~~~SP~~---~~i~~~~~~~~ 837 (969)
..... ....+..++ ..-..++.+ .+..+.+|... ...........++|++ .+++++..++.
T Consensus 388 ~~~~~-----------~~i~~~~~s--pdg~~la~~~~~g~v~l~~~~--~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~ 452 (814)
T 3mkq_A 388 RNKAF-----------GKCQDFVWG--PDSNSYALIDETGQIKYYKNF--KEVTSWSVPMHSAIDRLFSGALLGVKSDGF 452 (814)
T ss_dssp EEEEE-----------EECSEEEEC--TTSSCEEEECTTCCEEEEETT--EECTTCCCCCSSCCCEEECSSSEEEEETTE
T ss_pred cccCC-----------CceEEEEEe--CCCCeEEEEeCCCcEEEEECC--CCccceEEcCCcCccceecceEEEEecCCE
Confidence 21110 111111111 111112223 34445555322 1222234566789998 57888888999
Q ss_pred cccCCCCCCccccCCCCCCCCccccccCCCCCCcccc
Q 002086 838 LPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTS 874 (969)
Q Consensus 838 L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~ 874 (969)
+..|...++.....+..+.. .+.|+|.-..+.+.
T Consensus 453 v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 453 VYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIV 486 (814)
T ss_dssp EEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEE
T ss_pred EEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEE
Confidence 99999888877776666554 67788875544433
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.2e-29 Score=281.41 Aligned_cols=302 Identities=14% Similarity=0.200 Sum_probs=231.1
Q ss_pred EecccccCEEEEEEeCC----CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 446 EIQAHEGSIWTIKFSLD----ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpD----g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
.+.+|.+.|++|+|+|+ ..++++++.++.|+|||+.+++.+..+...
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------------------- 63 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------------------- 63 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-----------------------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-----------------------------
Confidence 34589999999999984 446666666779999999877655432210
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC-----cEEEEEeCCCcEEEEECCCCcEEEEe-ecCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS-----HLLLSSSMDKTVRLWDMETKSCLKLF-AHND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~-----~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~ 595 (969)
....|...|++++|+++ .+|++|+.||.|++||+.+++++..+ +|..
T Consensus 64 ---------------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 64 ---------------------------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp ---------------------------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred ---------------------------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence 11237789999999973 58999999999999999999998887 5999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe----cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT----DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
.|.+++|+|.++.+|++++.||.|++||+++++.+... .+...|.+++|+|++.+|++++.||.|++||+++++..
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 99999999967899999999999999999998877765 67889999999999999999999999999999876543
Q ss_pred eeeee--------------------eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-----------
Q 002086 672 QLNQV--------------------DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV----------- 720 (969)
Q Consensus 672 ~~~~~--------------------~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~----------- 720 (969)
..... ........|...|.+++|+ + .++++++.|+.|++||.....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 21110 0011123488999999999 3 699999999999999965431
Q ss_pred ---EEEEeecCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcc
Q 002086 721 ---HKFRGFRNTSSQISAAFNAD--GKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMV 795 (969)
Q Consensus 721 ---~~~~~~~~~~~V~sl~fspd--g~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i 795 (969)
.......+...|.+++|+|+ +++|++|+.||.|++||+.+++.... ...... .+.
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~-~~~----------------- 333 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA--KCTTLT-HHK----------------- 333 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC--EEEEEC-CTT-----------------
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc--cceEEc-ccc-----------------
Confidence 23334456677889999999 99999999999999999998543211 111111 110
Q ss_pred cCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCC
Q 002086 796 KGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPK 843 (969)
Q Consensus 796 ~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~ 843 (969)
........+++|++.++++++.++.+..|..
T Consensus 334 -----------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 334 -----------------CGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp -----------------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -----------------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 0111223456888888899999999888864
No 68
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-29 Score=277.27 Aligned_cols=301 Identities=17% Similarity=0.201 Sum_probs=210.2
Q ss_pred hhhccCCCcceeeeecccccccccCCCCccccccccccccccccccccccc-ce-eeeeEEEeeecCCccccCCCCcccc
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALL-KN-IKGVAHSMSVKGDKECINPNPLLGD 408 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l-~~-v~gv~~s~~~~gd~~~~~~~~l~~~ 408 (969)
+..+.||...|.++++..+ .+++++.|..+..|....-.+... ..+ .. +.+.+.++.|+++...+..
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~---~~~~~~~h~~~v~~v~~sp~~~~las------ 75 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLI---DVLDETAHKKAIRSVAWRPHTSLLAA------ 75 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEE---EEECTTCCCSCEEEEEECTTSSEEEE------
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEE---EEEecCCccCCEEEEEECCCCCEEEE------
Confidence 4567899999999997655 788888999888776432111100 111 11 3344555666666543222
Q ss_pred hHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe
Q 002086 409 QREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM 488 (969)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~ 488 (969)
...++.+.++.. ..........+++..|.+|.+.|++++|+|+|++||+|+.|++|+|||+.....
T Consensus 76 ---------~s~D~~v~iw~~--~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~--- 141 (330)
T 2hes_X 76 ---------GSFDSTVSIWAK--EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE--- 141 (330)
T ss_dssp ---------EETTSCEEEEEC---------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC---
T ss_pred ---------EeCCCcEEEEEc--ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC---
Confidence 112333333322 111111123456788999999999999999999999999999999999853110
Q ss_pred ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE
Q 002086 489 SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL 567 (969)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~ 567 (969)
..+.+..+.+|...|.+++|+| +.+
T Consensus 142 ------------------------------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~ 167 (330)
T 2hes_X 142 ------------------------------------------------------EYECISVLQEHSQDVKHVIWHPSEAL 167 (330)
T ss_dssp ------------------------------------------------------CCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred ------------------------------------------------------CeEEEEEeccCCCceEEEEECCCCCE
Confidence 0112336778999999999999 889
Q ss_pred EEEEeCCCcEEEEECCCC--cEEEEe-ecCCCeEEEEEecCC--CCEEEEEECCCeEEEEeCCCc--------eEEEEe-
Q 002086 568 LLSSSMDKTVRLWDMETK--SCLKLF-AHNDYVTCIQFNPMD--DDYFISGSLDAKVRIWSISDR--------LVVDWT- 633 (969)
Q Consensus 568 L~Sgs~DgtV~IWDl~t~--~~i~~~-~h~~~V~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~--------~~~~~~- 633 (969)
|++|+.|++|++||+.++ +++..+ +|...|.+++|+| + +.+|++|+.|++|++||+..+ ......
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 999999999999999876 566666 7999999999999 6 568999999999999999754 223322
Q ss_pred c-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC-CeEEEEEcCC-CCceEEEEeCCCc
Q 002086 634 D-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR-KITGFQFSPS-NPSEVLVTSADSR 710 (969)
Q Consensus 634 ~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~-~It~l~fspd-~~~~l~sgs~Dg~ 710 (969)
. |...|.+++|++++ +|++++.||.|+|||..++...... .....|.. .|.+++|+|. ++.+|++++.|++
T Consensus 247 ~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~-----~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA-----KRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE-----EESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe-----ccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 2 77889999999765 8999999999999999876422111 11145665 8999999994 3378999999999
Q ss_pred EEEEeCC
Q 002086 711 IRILDGL 717 (969)
Q Consensus 711 I~IwD~~ 717 (969)
|+|||..
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999964
No 69
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.6e-28 Score=281.72 Aligned_cols=257 Identities=17% Similarity=0.282 Sum_probs=212.5
Q ss_pred ccccccceeeeEecc-cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~L~g-H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
+|++...+....+.. |.+.|++++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 117 lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------- 170 (401)
T 4aez_A 117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-------------------------- 170 (401)
T ss_dssp EEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------------
T ss_pred EeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE--------------------------
Confidence 345555666666665 89999999999999999999999999999998765543
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECC-CCcEEEEe-
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDME-TKSCLKLF- 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~-t~~~i~~~- 591 (969)
.+.+|...|.+++|+ +++|++|+.||.|++||+. .+..+..+
T Consensus 171 -----------------------------------~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 171 -----------------------------------TMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp -----------------------------------EECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred -----------------------------------EecCCCCceEEEEEC-CCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence 556799999999996 4899999999999999998 45555555
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCC-EEEEEe--CCCcEEEEEcCC
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQ-NALIGS--HKGSCRLYSIED 667 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~-~Lasgs--~dg~I~IwDl~~ 667 (969)
+|...|.+++|+| ++.+|++|+.||.|++||++++..+. +..+...|.+++|+|++. ++++++ .|+.|++||+.+
T Consensus 215 ~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 215 GHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred CCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 7999999999999 99999999999999999999887654 456788999999999775 555554 799999999998
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--eCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--SADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
++..... .+...|.+++|+|++ ..++++ +.|+.|++||... .........|...|.+++|+|+|++
T Consensus 294 ~~~~~~~---------~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 294 GARVNTV---------DAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp CCEEEEE---------ECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred CCEEEEE---------eCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence 8765432 245689999999998 677774 4899999999765 4444455667888999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCcc
Q 002086 744 IISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
|++++.||.|++|++.+++.+
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEECTTSEEEEEECCC----
T ss_pred EEEEeCCCcEEEEECCCCccc
Confidence 999999999999999986543
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.1e-28 Score=277.70 Aligned_cols=281 Identities=17% Similarity=0.244 Sum_probs=219.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
++++...+....+.+|.+.|++|+|+| ++++||+|+.||.|+|||+.+++.........
T Consensus 27 v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------- 86 (408)
T 4a11_B 27 VLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA-------------------- 86 (408)
T ss_dssp HHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE--------------------
T ss_pred eeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc--------------------
Confidence 445666667778899999999999999 99999999999999999998754432110000
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
... .......+|...|.+++|+| +.+|++++.||.|++||+.+++.+..+
T Consensus 87 -------------------------~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (408)
T 4a11_B 87 -------------------------VCS---IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF 138 (408)
T ss_dssp -------------------------EEE---ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -------------------------ccc---ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec
Confidence 000 00001246999999999998 469999999999999999999999999
Q ss_pred ecCCCeEEEEEecC--CCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCC
Q 002086 592 AHNDYVTCIQFNPM--DDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIED 667 (969)
Q Consensus 592 ~h~~~V~sv~fsp~--~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~ 667 (969)
.+...+.++.|.+. ++.+|++++.||.|++||+.++..+. +..|...|.+++|+|++. +|++|+.||.|++||++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 99999999999983 23499999999999999999876554 455788999999999998 588999999999999987
Q ss_pred Cceeeee--------eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-------------------
Q 002086 668 SKLHQLN--------QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV------------------- 720 (969)
Q Consensus 668 ~~~~~~~--------~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~------------------- 720 (969)
....... ..........|...|.+++|+|++ .+|++++.|+.|++||.....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF 297 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceecccccccccccccee
Confidence 6521110 000112225688999999999987 799999999999999954311
Q ss_pred ----------------------------EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 721 ----------------------------HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 721 ----------------------------~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
.......|...|.+++|+|++++|++++.||.|++|++.+.+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 298 TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred EEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 12222346788999999999999999999999999999986543
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=301.08 Aligned_cols=203 Identities=10% Similarity=0.133 Sum_probs=165.5
Q ss_pred EeccCCCCEEEEEecCC-------cEEEEEeCCCcEEEEECCCCcEE------------EEeecCCCeEEEEEecCCCCE
Q 002086 549 SFIGHLDDVLDLSWSRS-------HLLLSSSMDKTVRLWDMETKSCL------------KLFAHNDYVTCIQFNPMDDDY 609 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~~-------~~L~Sgs~DgtV~IWDl~t~~~i------------~~~~h~~~V~sv~fsp~~~~~ 609 (969)
.+.+|.+.|.+++|+|. .+|++++.||+|+|||+.++.+. ...+|...|++++|++ + ..
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~ 279 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TT 279 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-Ce
Confidence 45678899999999983 69999999999999999876421 2237999999999997 4 58
Q ss_pred EEEEECCCeEEEEeCCCce--EEEEecCCCCEEEE--EEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 610 FISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAA--CYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 610 L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv--~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
|++|+.||+|++||++++. ...+..|...|+++ +|+|++ .+|++|+.|++|+|||+++++....... ..
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~------~~ 353 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS------RF 353 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE------EC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc------cc
Confidence 9999999999999998753 23467788999999 578887 8999999999999999988765332210 11
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....|.+++|+|++ ..+++++.|++|++||............|...|++++|+|+|++|++|+.||+|+|||+..
T Consensus 354 ~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 354 RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred ccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 11357899999987 6799999999999999876543333445788899999999999999999999999999864
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=284.35 Aligned_cols=255 Identities=18% Similarity=0.339 Sum_probs=197.7
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|.+.|++|+|+|+|++||+|+.||.|+|||+.+++.......
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------------------------------------- 68 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR------------------------------------- 68 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC-------------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc-------------------------------------
Confidence 3789999999999999999999999999999987543210000
Q ss_pred CCCcccccceeeecCCCceeEeccCC------------CCEEEEEecC-C--cEEEEEeCCCcEEEEECCCCcEE-----
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHL------------DDVLDLSWSR-S--HLLLSSSMDKTVRLWDMETKSCL----- 588 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~------------~~I~~l~fs~-~--~~L~Sgs~DgtV~IWDl~t~~~i----- 588 (969)
...+....+.+|. +.|.+++|+| + .+|++++.|++|++||+.++...
T Consensus 69 -------------~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 135 (447)
T 3dw8_B 69 -------------GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYN 135 (447)
T ss_dssp -------------CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCS
T ss_pred -------------cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceec
Confidence 0112234677887 8899999999 4 69999999999999999875442
Q ss_pred ----------------------------------EE--eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEE
Q 002086 589 ----------------------------------KL--FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVD 631 (969)
Q Consensus 589 ----------------------------------~~--~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~ 631 (969)
.. .+|...|.+++|+| ++.+|++| .|+.|++||+.. +..+.
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~ 213 (447)
T 3dw8_B 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFN 213 (447)
T ss_dssp CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEE
T ss_pred ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceee
Confidence 12 26999999999999 89999998 899999999994 44444
Q ss_pred --------EecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC------------CCeE
Q 002086 632 --------WTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST------------RKIT 690 (969)
Q Consensus 632 --------~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~------------~~It 690 (969)
+..|...|.+++|+|++ .+|++|+.||.|++||+++++...... .....|. ..|.
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~ 289 (447)
T 3dw8_B 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS----KLFEEPEDPSNRSFFSEIISSIS 289 (447)
T ss_dssp EEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC----EEECCC-----CCHHHHHTTCEE
T ss_pred eeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee----eEeccCCCccccccccccCceEE
Confidence 34678889999999998 999999999999999999877411000 0113333 3899
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCC-------------eEEEEEeCCCCEEEEEeCCCcEE
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSS-------------QISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~-------------V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
+++|+|++ .+|++++. +.|++||... ....+..+..... +..++|+|++++|++|+.||.|+
T Consensus 290 ~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 290 DVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp EEEECTTS-SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred EEEECCCC-CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEE
Confidence 99999988 78888888 9999999764 3444544432111 33489999999999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
|||+.++
T Consensus 368 iwd~~~~ 374 (447)
T 3dw8_B 368 MFDRNTK 374 (447)
T ss_dssp EEETTTC
T ss_pred EEEcCCC
Confidence 9999984
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3e-28 Score=273.53 Aligned_cols=255 Identities=15% Similarity=0.166 Sum_probs=210.4
Q ss_pred ccccce--eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 437 DLSALH--LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 437 dl~~~~--l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
++...+ .+..+.+|.+.|++++|+|++++|++++.|+.|++||+.+++....
T Consensus 36 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------------- 89 (372)
T 1k8k_C 36 EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-------------------------- 89 (372)
T ss_dssp EEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE--------------------------
T ss_pred eCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee--------------------------
Confidence 444444 7888999999999999999999999999999999999987664331
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE---EEE
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC---LKL 590 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~---i~~ 590 (969)
..+.+|...|.+++|++ +.+|++++.|+.|++||+..+.. ...
T Consensus 90 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 90 ---------------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp ---------------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred ---------------------------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 13456889999999999 88999999999999999998772 233
Q ss_pred e--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC------------------CceEEE-EecCCCCEEEEEEccCCC
Q 002086 591 F--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS------------------DRLVVD-WTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 591 ~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~------------------~~~~~~-~~~~~~~V~sv~fspdg~ 649 (969)
+ .|...|.+++|+| ++.+|++++.||.|++||+. .+..+. +..|...|.+++|+|+++
T Consensus 137 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 137 IKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 215 (372)
T ss_dssp ECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred eecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence 2 6899999999999 89999999999999999964 455554 446778999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEE-----
Q 002086 650 NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHK----- 722 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~----- 722 (969)
+|++++.||.|++||+.+++..... ..|...|.+++|+|++ .+++++ .|+.|++|+... ....
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMAVATL--------ASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTEEEEE--------ECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEEEeCCCEEEEEECCCCceeEEE--------ccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 9999999999999999988765432 4577899999999987 556555 999999999655 2100
Q ss_pred ---------------------------------EEe-ecCCCCeEEEEEe-CCC---CEEEEEeCCCcEEEEEcCCC
Q 002086 723 ---------------------------------FRG-FRNTSSQISAAFN-ADG---KYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 723 ---------------------------------~~~-~~~~~~V~sl~fs-pdg---~~LaSgs~Dg~I~IWdl~t~ 761 (969)
... ..|...|++++|. ++| .+|++|+.||.|+||++.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 111 2577889999966 677 99999999999999999874
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.7e-28 Score=271.22 Aligned_cols=256 Identities=18% Similarity=0.303 Sum_probs=207.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCC---CCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLD---ARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpD---g~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
.....+.++.+++|.+.|++|+|+|+ |++|++|+.||.|+|||+.+ +..+.
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------------- 79 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------------- 79 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------------
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------------
Confidence 34556677789999999999999999 69999999999999999986 32221
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
..+.+|...|.+++|+| +++|++++.||.|++||+.+++++...
T Consensus 80 -----------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 124 (368)
T 3mmy_A 80 -----------------------------------KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA 124 (368)
T ss_dssp -----------------------------------EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -----------------------------------EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec
Confidence 25678999999999999 789999999999999999999999989
Q ss_pred ecCCCeEEEEE--ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQF--NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~f--sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.|...|.+++| ++ ++.+|++++.||.|++||+++++.+........+.++.+.+ ..+++++.++.+++|++....
T Consensus 125 ~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 125 QHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAERGLIVYQLENQP 201 (368)
T ss_dssp ECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSC
T ss_pred cccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCCCcEEEEEecccc
Confidence 99999999999 77 78899999999999999999988777777777777777764 588999999999999998765
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCC---CceEEEEeCCCcEEEEeCCcc-----eEEEEeecCC----------CC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSN---PSEVLVTSADSRIRILDGLDI-----VHKFRGFRNT----------SS 731 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~---~~~l~sgs~Dg~I~IwD~~~~-----~~~~~~~~~~----------~~ 731 (969)
..... ....+...+.++.+.++. +..+++++.|+.|++|+.... ...+..+... ..
T Consensus 202 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (368)
T 3mmy_A 202 SEFRR------IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA 275 (368)
T ss_dssp EEEEE------CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECC
T ss_pred chhhh------ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccc
Confidence 43221 112344455666655543 123999999999999997643 2334333221 16
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 732 QISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 732 V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|.+++|+|++++|++|+.||.|+|||+.++
T Consensus 276 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 999999999999999999999999999873
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.1e-28 Score=280.53 Aligned_cols=203 Identities=13% Similarity=0.075 Sum_probs=167.4
Q ss_pred cCCCCEEEEEecC-CcEEEEE--eCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 552 GHLDDVLDLSWSR-SHLLLSS--SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sg--s~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
.+...+.+++|+| +++|+++ +.|++|+|||+.+++++..+.|...|.+|+|+| ++.+|++++.++ +++|+..++.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEecccee-EEEEEeccCc
Confidence 4556799999999 7776644 479999999999999999999999999999999 999999998655 6666666554
Q ss_pred EE-E--EecCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 629 VV-D--WTDLHEMVTAACYTPDGQNALIGSHKG----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 629 ~~-~--~~~~~~~V~sv~fspdg~~Lasgs~dg----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
.+ . ...+...|.+++|+|++.++++++.++ .+++|++......... ......|...|++++|+|++ .+
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~V~~~~~Spdg-~~ 283 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR----SKQVTNRFKGITSMDVDMKG-EL 283 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE----EEEEESSCSCEEEEEECTTS-CE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee----eeeecCCCCCeEeEEECCCC-Cc
Confidence 43 2 234667899999999999999999887 6888998776543221 12235788899999999998 89
Q ss_pred EEEEeCCCcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 702 VLVTSADSRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|++|+.|++|+|||..+....... ..|...|++++|+|||++||+|+.|++|+||++...
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999998876665543 457889999999999999999999999999999754
No 76
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.3e-29 Score=286.38 Aligned_cols=252 Identities=15% Similarity=0.155 Sum_probs=190.5
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~------------------------------------ 89 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT------------------------------------ 89 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C------------------------------------
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc------------------------------------
Confidence 34556788999999999999999999999999999999986540
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE---EEEe-e-cCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC---LKLF-A-HND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~---i~~~-~-h~~ 595 (969)
.++...+.+|...|.+++|+| +++|++|+.|+.|++||+.+++. ...+ . |..
T Consensus 90 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 90 ----------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp ----------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred ----------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 011235667999999999999 78999999999999999998873 4444 4 999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCC------------------CceEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSIS------------------DRLVVDWTDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~------------------~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
.|.+++|+| ++.+|++++.|+.|++||+. .++++..+.|...|.+++|+|++++|++++.|
T Consensus 148 ~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 148 TILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp CEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT
T ss_pred CeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC
Confidence 999999999 89999999999999999985 24455545788899999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-----------------
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV----------------- 720 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~----------------- 720 (969)
|.|++||+.+++.... .......|...|.+++|+|++ .+|++++.++.+ +|+.....
T Consensus 227 ~~i~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPPR----ALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp TEEC-CEECSTTSCEE----ECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred CcEEEEECCCCCCcce----eeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 9999999998875211 112236788899999999998 677777655555 66633100
Q ss_pred ---------------------EEEEe--------------ecCCCCeEEEEEeCC-CC---EEEEEeCCCcEEEEEc
Q 002086 721 ---------------------HKFRG--------------FRNTSSQISAAFNAD-GK---YIISASEDSQVYVWKR 758 (969)
Q Consensus 721 ---------------------~~~~~--------------~~~~~~V~sl~fspd-g~---~LaSgs~Dg~I~IWdl 758 (969)
..+.. ..|...|+++.+.++ +. .|+||+.||.|+|||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00110 117778999997664 33 6999999999999986
No 77
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.3e-28 Score=273.33 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=208.6
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+....+|.+.|++++|+|++++|++++.|+.|+||++.+++...
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~------------------------------------ 47 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------------------ 47 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE------------------------------------
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc------------------------------------
Confidence 34456899999999999999999999999999999987653110
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEEC-CCCcEEEEee--cCCCeE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDM-ETKSCLKLFA--HNDYVT 598 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl-~t~~~i~~~~--h~~~V~ 598 (969)
+...+.+|...|.+++|++ +. +|++|+.||.|++||+ .+++...... |...|.
T Consensus 48 ----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~ 105 (342)
T 1yfq_A 48 ----------------------DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105 (342)
T ss_dssp ----------------------EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE
T ss_pred ----------------------cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE
Confidence 1124457999999999998 78 9999999999999999 9888866667 999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCC---------ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-C
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISD---------RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-S 668 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~---------~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~ 668 (969)
+++|+| +.+|++++.|+.|++||+++ ++.+....+...|.+++|+|++ +++++.++.|++||++. .
T Consensus 106 ~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 106 RICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp EEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCT
T ss_pred EEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccc
Confidence 999998 89999999999999999987 6666666688899999999987 99999999999999988 5
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcC-CCCceEEEEeCCCcEEEEeCC--------cceEEEEeecC-------CCCe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSP-SNPSEVLVTSADSRIRILDGL--------DIVHKFRGFRN-------TSSQ 732 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fsp-d~~~~l~sgs~Dg~I~IwD~~--------~~~~~~~~~~~-------~~~V 732 (969)
...... ....+...|.+++|+| ++ .++++++.|+.|++|+.. .....+..+.. ...|
T Consensus 182 ~~~~~~------~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (342)
T 1yfq_A 182 DDNGTI------EESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254 (342)
T ss_dssp TCCCEE------EECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCE
T ss_pred ccccee------eecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeE
Confidence 432111 1145778899999999 87 799999999999999954 33444554432 3489
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+++|+|++++|++++.||.|++||+.++
T Consensus 255 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred EEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 99999999999999999999999999873
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=4.2e-28 Score=280.09 Aligned_cols=255 Identities=19% Similarity=0.293 Sum_probs=211.8
Q ss_pred ccccccceeeeEe--cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEI--QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L--~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+|++.++++.+.+ .+|.+.|++|+|+|||++||+|+.||+|+|||+.+++.+.
T Consensus 129 lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~------------------------- 183 (420)
T 4gga_A 129 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR------------------------- 183 (420)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------------------------
T ss_pred EEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-------------------------
Confidence 3456666655544 5788899999999999999999999999999999877654
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-EEEEe
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-CLKLF 591 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-~i~~~ 591 (969)
.+.+|...|.++.|+ +.+|++|+.|+.+++||..... .+..+
T Consensus 184 ------------------------------------~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~ 226 (420)
T 4gga_A 184 ------------------------------------NMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATL 226 (420)
T ss_dssp ------------------------------------EECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ------------------------------------EEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEe
Confidence 566799999999987 4899999999999999998754 33444
Q ss_pred -ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-----EEEEecCCCCEEEEEEccCCC-EEEE--EeCCCcEEE
Q 002086 592 -AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-----VVDWTDLHEMVTAACYTPDGQ-NALI--GSHKGSCRL 662 (969)
Q Consensus 592 -~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-----~~~~~~~~~~V~sv~fspdg~-~Las--gs~dg~I~I 662 (969)
+|...+..+.|+| ++.++++++.|+.|++||...++ +.....+...|.+++|+|.+. .+++ |+.|++|++
T Consensus 227 ~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i 305 (420)
T 4gga_A 227 SGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305 (420)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred cccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence 8999999999999 99999999999999999998764 345667888999999999765 5554 457999999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe--CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS--ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs--~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd 740 (969)
||+.+++..... .+...+.++.|+|++ ..+++++ .|+.|+|||..+.........|...|++++|+||
T Consensus 306 wd~~t~~~~~~~---------~~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 306 WNVCSGACLSAV---------DAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp EETTTTEEEEEE---------ECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EeCCccccceee---------ccccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 999998865442 235678999999988 4555543 7899999998776666666667889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCC
Q 002086 741 GKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
|++|+||+.|++|+|||+.+..
T Consensus 376 g~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 376 GATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp SSCEEEEETTTEEEEECCSCSS
T ss_pred CCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999998643
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=9e-28 Score=278.91 Aligned_cols=238 Identities=20% Similarity=0.392 Sum_probs=202.3
Q ss_pred eeeeEecccccCE-EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 442 HLCQEIQAHEGSI-WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 442 ~l~~~L~gH~~~I-~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+....|.+|.+.| ++ ++++|++|++|+.||+|+|||+.+++.+.
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--------------------------------- 153 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------------------------------- 153 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEE---------------------------------
T ss_pred ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEE---------------------------------
Confidence 3456789999975 55 45568999999999999999998776544
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
.+.+|.+.|+++.|+ +++|++|+.||+|++||+.+++++..+ +|...|.+
T Consensus 154 ----------------------------~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 204 (445)
T 2ovr_B 154 ----------------------------TLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 204 (445)
T ss_dssp ----------------------------ECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred ----------------------------EEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEE
Confidence 456799999999998 589999999999999999999998887 79999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++|+ +++|++|+.||.|++||+.+++.+. +..|...|.+++| ++.++++|+.||.|++||+.+++.....
T Consensus 205 ~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~---- 275 (445)
T 2ovr_B 205 MHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL---- 275 (445)
T ss_dssp EEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE----
T ss_pred EEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe----
Confidence 9995 5789999999999999999887654 5567789999999 7889999999999999999988754332
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..|...|.++.| ++ ..+++++.|+.|++||............+...+.++.+ ++.+|++|+.||.|++||+
T Consensus 276 ----~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 276 ----QGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp ----CCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred ----cCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEEC
Confidence 568889999999 34 78999999999999998776655555566777777766 5679999999999999999
Q ss_pred CCC
Q 002086 759 EEH 761 (969)
Q Consensus 759 ~t~ 761 (969)
.++
T Consensus 347 ~~~ 349 (445)
T 2ovr_B 347 KTG 349 (445)
T ss_dssp TTC
T ss_pred CCC
Confidence 873
No 80
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.1e-29 Score=288.01 Aligned_cols=304 Identities=11% Similarity=0.081 Sum_probs=231.3
Q ss_pred hhc-cCCCcceeeeeccc-ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 332 EKS-VGHSPVVKELMRRE-NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 332 ~~~-~GHs~~V~~l~~~~-~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
..+ .||...|.++++.. ++..+++++.|..+..|... ..... . .
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~-----~~~~~-----------------~--~---------- 101 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK-----EIIVG-----------------E--V---------- 101 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH-----HHHTT-----------------C--C----------
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECc-----ccccC-----------------c--c----------
Confidence 445 78999999999877 88889998888877666521 11000 0 0
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecc---cceEE
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ---ECEVM 486 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~---tg~~l 486 (969)
.+....+ +|.+.|++|+|+|++++|++|+.||+|+|||+. +++.+
T Consensus 102 -------------------------------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 149 (437)
T 3gre_A 102 -------------------------------YSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149 (437)
T ss_dssp -------------------------------CSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred -------------------------------cceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee
Confidence 0001112 499999999999999999999999999999995 44444
Q ss_pred EeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCcee--Eecc--CCCCEEEEEe
Q 002086 487 SMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFC--SFIG--HLDDVLDLSW 562 (969)
Q Consensus 487 ~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~--~l~g--H~~~I~~l~f 562 (969)
....++ .+. .+.. +...+.++.+
T Consensus 150 ~~~~~~-----------------------------------------------------~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 150 KFLNCE-----------------------------------------------------CIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp EEEEEE-----------------------------------------------------EEEEEEGGGGSSCCCEEEEEE
T ss_pred eccccc-----------------------------------------------------eeEEEEccCcccccCceEEEE
Confidence 322211 011 1122 6677888884
Q ss_pred --cC-CcEEEEEeCCCcEEEEECCCCcEEEEe-e--cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe--c
Q 002086 563 --SR-SHLLLSSSMDKTVRLWDMETKSCLKLF-A--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT--D 634 (969)
Q Consensus 563 --s~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~ 634 (969)
++ +.+|++|+.|+.|++||+.+++++..+ . |...|++++|+| ++.+|++|+.||.|++||+++++.+... .
T Consensus 177 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 255 (437)
T 3gre_A 177 FVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFG 255 (437)
T ss_dssp EECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCT
T ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecC
Confidence 45 789999999999999999999998887 3 899999999999 8999999999999999999999887754 6
Q ss_pred CCCCEEEEEEcc----CCCEEEEEeCCCcEEEEEcCCCceeeeeeee--------ecc--------ccc--CCCCCeEEE
Q 002086 635 LHEMVTAACYTP----DGQNALIGSHKGSCRLYSIEDSKLHQLNQVD--------FQT--------KKK--SSTRKITGF 692 (969)
Q Consensus 635 ~~~~V~sv~fsp----dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~--------~~~--------~~~--~h~~~It~l 692 (969)
+...|.+++|+| ++.+|++|+.||.|++||+.+++........ +.. ... .|...|+++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 677899996664 6789999999999999999988765443211 000 011 277789999
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEEee-----------------------------------cCCCCeEEE
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLDI--VHKFRGF-----------------------------------RNTSSQISA 735 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~-----------------------------------~~~~~V~sl 735 (969)
+|+ ++ .+|++++.|+.|++||+.+. ...+..+ .|...|+++
T Consensus 336 ~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i 413 (437)
T 3gre_A 336 SVS-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI 413 (437)
T ss_dssp EEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred EEC-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence 999 55 79999999999999996643 2333321 167889999
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEE
Q 002086 736 AFNAD--GKYIISASEDSQVYVWK 757 (969)
Q Consensus 736 ~fspd--g~~LaSgs~Dg~I~IWd 757 (969)
+|+++ +.+|++|+.||.|+||+
T Consensus 414 ~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 414 STCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeeccCCceEEEEEcCCceEEEeC
Confidence 99998 78999999999999995
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=5.2e-27 Score=273.32 Aligned_cols=251 Identities=19% Similarity=0.363 Sum_probs=215.0
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|++.+.+.+.++.+|.+.|++++|++++ +|++|+.||+|+|||+.+++.+.
T Consensus 146 vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~--------------------------- 197 (464)
T 3v7d_B 146 VYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH--------------------------- 197 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE---------------------------
T ss_pred EEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE---------------------------
Confidence 34677788899999999999999999988 99999999999999998876554
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcE----
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSC---- 587 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~---- 587 (969)
.+.+|...|.+++|++ +.+|++|+.|++|++||+.++..
T Consensus 198 ----------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 198 ----------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ----------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred ----------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 5667999999999984 58999999999999999988753
Q ss_pred -------------------EEE-eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEcc
Q 002086 588 -------------------LKL-FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTP 646 (969)
Q Consensus 588 -------------------i~~-~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fsp 646 (969)
+.. .+|...|.++. + ++.+|++|+.||.|++||+.+++.+. +..|...|.+++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred cccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC
Confidence 222 37888888885 4 68999999999999999999987665 445778999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~ 726 (969)
++++|++|+.||.|++||+.+++..... ..|...|.++.|++ .++++++.|+.|++||..+....+..+
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENGELMYTL--------QGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEE--------eCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec
Confidence 9999999999999999999988765432 57889999999984 699999999999999988766655544
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 727 RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
+...+..++|++++.+|++|+ ||.|+|||+.+++.
T Consensus 390 -~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 390 -HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp -CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred -CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 455677889999999999999 99999999998543
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3e-27 Score=259.30 Aligned_cols=253 Identities=19% Similarity=0.289 Sum_probs=209.2
Q ss_pred ccccccceeeeEe--cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEI--QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L--~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+|++.++++++.+ .+|...|++|+|+|++++||+|+.||+|+|||+.+++.+.
T Consensus 49 iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~------------------------- 103 (318)
T 4ggc_A 49 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR------------------------- 103 (318)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------------------
T ss_pred EEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-------------------------
Confidence 4466666666655 5788899999999999999999999999999999887655
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcE-EEE-
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSC-LKL- 590 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~-i~~- 590 (969)
.+.+|...+.++.+. +..|++++.++.+++|+...... +..
T Consensus 104 ------------------------------------~~~~h~~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 104 ------------------------------------NMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp ------------------------------------EEECCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ------------------------------------EecCccceEEEeecC-CCEEEEEecCCceEeeecCCCceeEEEE
Confidence 456788888877765 48999999999999999987653 333
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-----EEEEecCCCCEEEEEEccCCCEE---EEEeCCCcEEE
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-----VVDWTDLHEMVTAACYTPDGQNA---LIGSHKGSCRL 662 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-----~~~~~~~~~~V~sv~fspdg~~L---asgs~dg~I~I 662 (969)
.+|...+.++.+.+ ++.+|++++.|+.|++||+++++ ......+...|.+++++|++..+ ++++.++.|++
T Consensus 147 ~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 147 SGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred cCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 48999999999999 89999999999999999998764 34556677889999999977643 35667899999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd 740 (969)
||......... ..+...+..+.|+|.+. .++++ +.|+.|+|||..+.........|...|++++|+||
T Consensus 226 wd~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 226 WNVCSGACLSA---------VDAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp EETTTCCEEEE---------EECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred Eeccccccccc---------ccceeeeeeeeeccccc-ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 99988765433 34567799999999884 44444 47999999998876666666667889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 002086 741 GKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t 760 (969)
|++|+||+.||+|+|||+.+
T Consensus 296 g~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 296 GATVASAAADETLRLWRCFE 315 (318)
T ss_dssp SSCEEEEETTTEEEEECCSC
T ss_pred CCEEEEEecCCeEEEEECCC
Confidence 99999999999999999976
No 83
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=1.7e-27 Score=270.16 Aligned_cols=271 Identities=13% Similarity=0.161 Sum_probs=207.5
Q ss_pred CCceeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCCe
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAK 618 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg~ 618 (969)
.+....+.+|...|++++|++ + .+|++|+.||.|+|||+.+++....+ +|...|.+++|+|.++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 344567899999999999999 5 79999999999999999998877766 599999999999955689999999999
Q ss_pred EEEEeCCCceEEEEecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 619 VRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
|++||+.+..+..+..+. ..|.+++|+|++++|++|+.|+.|++||++.. .... ...|...|.+++|+
T Consensus 143 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~--------~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 143 TTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-EIFK--------EKLHKAKVTHAEFN 213 (383)
T ss_dssp EEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-EEEE--------EECSSSCEEEEEEC
T ss_pred EEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-EEEE--------eccCCCcEEEEEEC
Confidence 999999987766665544 77999999999999999999999999999533 2221 15688999999999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCCccCCCceeE
Q 002086 696 PSNPSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREEHRNASTGKRAI 771 (969)
Q Consensus 696 pd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~ 771 (969)
|++..++++++.|+.|++||.... ........+...|.+++|+| ++.+|++++.|+.|+|||+.+.+...+
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----- 288 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ----- 288 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE-----
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc-----
Confidence 998559999999999999997651 12222235788999999999 999999999999999999998544321
Q ss_pred EecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccC
Q 002086 772 ITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERV 851 (969)
Q Consensus 772 ~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~ 851 (969)
...+..... .........| ..........++|++.+ +++.++.+..|...++....+
T Consensus 289 -~~~~~~~~~--------------~~~~~~~~~~------~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 289 -IIIHPHRQF--------------QHLTPIKATW------HPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp -EEECCBCCC--------------TTSCCCCCEE------CSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred -ccccccccc--------------ccccceEEec------cCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence 111100000 0000000111 11123344667899988 888999999998776654443
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-28 Score=305.19 Aligned_cols=254 Identities=17% Similarity=0.280 Sum_probs=209.1
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
...+.+|.+.|++++|+|+|++|++|+.||+|+|||+..+...
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------------------------------------- 44 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------------------------------- 44 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-------------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-------------------------------------
Confidence 3568899999999999999999999999999999998733211
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~V 597 (969)
....+.+|.+.|++++|++ +++|++|+.||+|++||+.+++ .+..+ .|...|
T Consensus 45 ----------------------~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V 102 (753)
T 3jro_A 45 ----------------------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102 (753)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ----------------------cceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence 1236778999999999985 6899999999999999999986 44444 799999
Q ss_pred EEEEEecCC--CCEEEEEECCCeEEEEeCCCc---eEEEEecCCCCEEEEEEcc-------------CCCEEEEEeCCCc
Q 002086 598 TCIQFNPMD--DDYFISGSLDAKVRIWSISDR---LVVDWTDLHEMVTAACYTP-------------DGQNALIGSHKGS 659 (969)
Q Consensus 598 ~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~---~~~~~~~~~~~V~sv~fsp-------------dg~~Lasgs~dg~ 659 (969)
++++|+| + +.+|++|+.||.|++||+.++ .......+...|.+++|+| ++.+|++|+.||.
T Consensus 103 ~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 103 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 9999999 7 899999999999999999876 3456677889999999999 5899999999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC--CceEEEEeCCCcEEEEeCCcce-----EEEEeecCCCCe
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN--PSEVLVTSADSRIRILDGLDIV-----HKFRGFRNTSSQ 732 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~--~~~l~sgs~Dg~I~IwD~~~~~-----~~~~~~~~~~~V 732 (969)
|++||++++..... .......|...|++++|+|++ +.++++++.||.|++||..... .......+...|
T Consensus 182 I~iwd~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 182 VKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (753)
T ss_dssp EEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred EEEEeccCCcccce----eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence 99999987753221 112236789999999999993 4899999999999999966532 222233467789
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++++|+|+|++|++|+.||.|++|++...
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 99999999999999999999999999864
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=3.8e-27 Score=273.65 Aligned_cols=320 Identities=17% Similarity=0.235 Sum_probs=246.6
Q ss_pred hhhccCCCcce-eeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 331 FEKSVGHSPVV-KELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 331 ~~~~~GHs~~V-~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
...+.||...| .++.+ ++..+++++.|..+..|.....+ ....+..+.+.+.++.+++.... .
T Consensus 111 ~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~--s------- 174 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRDNIII--S------- 174 (445)
T ss_dssp CEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEETTEEE--E-------
T ss_pred eEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEecCCEEE--E-------
Confidence 34568999875 44443 45678888888888777643322 22233333444455555433211 0
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
+..++.+. +|++.+.+.+.++.+|...|.+++|+ +++|++|+.||+|++||+.+++.+.
T Consensus 175 --------~~~dg~i~---------vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~-- 233 (445)
T 2ovr_B 175 --------GSTDRTLK---------VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH-- 233 (445)
T ss_dssp --------EETTSCEE---------EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE--
T ss_pred --------EeCCCeEE---------EEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE--
Confidence 11222222 34667778888999999999999996 6789999999999999998765543
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLL 569 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~ 569 (969)
.+.+|...|.++.| .+.+|+
T Consensus 234 -----------------------------------------------------------~~~~~~~~v~~~~~-~~~~l~ 253 (445)
T 2ovr_B 234 -----------------------------------------------------------VLMGHVAAVRCVQY-DGRRVV 253 (445)
T ss_dssp -----------------------------------------------------------EEECCSSCEEEEEE-CSSCEE
T ss_pred -----------------------------------------------------------EEcCCcccEEEEEE-CCCEEE
Confidence 56679999999999 568999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccC
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPD 647 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspd 647 (969)
+|+.||.|++||+.+++++..+ +|...|.+++| ++.+|++++.||.|++||+++++.+. +..+...+.++.+ +
T Consensus 254 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~ 328 (445)
T 2ovr_B 254 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--K 328 (445)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--E
T ss_pred EEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--e
Confidence 9999999999999999998887 69999999999 57899999999999999999887665 4456677888777 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe--
Q 002086 648 GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-- 725 (969)
Q Consensus 648 g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-- 725 (969)
+++|++|+.||.|++||+.+++....... ...|...|++++|++ .++++++.||.|++||..........
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTGQCLQTLQG-----PNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECS-----TTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcc-----CCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 67999999999999999998876543211 134788999999974 69999999999999997765443333
Q ss_pred ---ecCCCCeEEEEEeCCCCEEEEEeCCCc----EEEEEcCC
Q 002086 726 ---FRNTSSQISAAFNADGKYIISASEDSQ----VYVWKREE 760 (969)
Q Consensus 726 ---~~~~~~V~sl~fspdg~~LaSgs~Dg~----I~IWdl~t 760 (969)
..+...|.+++|+|++.+|++|+.||+ |.|||+..
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 356778999999999999999999998 99999985
No 86
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=4.9e-27 Score=260.18 Aligned_cols=300 Identities=15% Similarity=0.241 Sum_probs=229.9
Q ss_pred hhccCCCcceeeeecc-cccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 332 EKSVGHSPVVKELMRR-ENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~-~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
.++.||+..|++|++. ..+..++|++.|..+..|.....+.........++.+...+.++.|+++...+...
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~------- 104 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG------- 104 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE-------
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE-------
Confidence 3578999999999975 45778999999998888764322111111122233344555666666665443221
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..++.+. +++............|...+..+.+++++.+|++|+.|+.+++||+.......
T Consensus 105 --------~~d~~i~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~--- 164 (340)
T 4aow_A 105 --------SWDGTLR---------LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT--- 164 (340)
T ss_dssp --------ETTSEEE---------EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE---
T ss_pred --------cccccce---------EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE---
Confidence 1222222 23455566677788899999999999999999999999999999987543322
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHL 567 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~ 567 (969)
..+.+|...|.+++|++ ..+
T Consensus 165 ---------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 165 ---------------------------------------------------------VQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp ---------------------------------------------------------ECSSSCSSCEEEEEECSCSSSCE
T ss_pred ---------------------------------------------------------EEeccccCcccceEEccCCCCcE
Confidence 13456889999999986 468
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEcc
Q 002086 568 LLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP 646 (969)
Q Consensus 568 L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp 646 (969)
+++++.|++|++||+.+++++..+ +|...|++++|+| ++.+|++|+.||.|++||+++.+.+....+...|.+++|+|
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 266 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 266 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence 899999999999999999998877 7999999999999 99999999999999999999999988888889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeee-ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVD-FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
++.+ ++++.|+.|++||+++.......... .......|...|++++|+|++ .+|++|+.||.|+|||+.+
T Consensus 267 ~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 267 NRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp SSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC
T ss_pred CCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCC
Confidence 8754 55667999999999988765433221 122335788999999999998 7999999999999999654
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.1e-27 Score=269.96 Aligned_cols=294 Identities=13% Similarity=0.184 Sum_probs=228.0
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+....+|...+.+.++++++..|++++.|+.|+|||+.+++.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~---------------------------------- 129 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA---------------------------------- 129 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE----------------------------------
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEee----------------------------------
Confidence 3345577776544444434456888999999999999987765421
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
...|...|.+++|+| +.+|++|+.||.|++||+.+++.+..+ +|...|.+++
T Consensus 130 --------------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 183 (401)
T 4aez_A 130 --------------------------ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLS 183 (401)
T ss_dssp --------------------------ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred --------------------------ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEE
Confidence 123788999999999 889999999999999999999988887 8999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCC-c-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISD-R-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~-~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
|+ +.+|++++.||.|++||++. . ....+..|...|.+++|+|++.+|++|+.||.|++||+++++.....
T Consensus 184 ~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~----- 255 (401)
T 4aez_A 184 WN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK----- 255 (401)
T ss_dssp EE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-----
T ss_pred EC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-----
Confidence 95 57999999999999999984 3 35566778899999999999999999999999999999987654332
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEe--CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe--CCCcEEE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTS--ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS--EDSQVYV 755 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs--~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs--~Dg~I~I 755 (969)
..|...|.+++|+|++..++++++ .|+.|++||......... ..+...+.+++|+|++++|++++ .||.|+|
T Consensus 256 ---~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v 331 (401)
T 4aez_A 256 ---TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331 (401)
T ss_dssp ---CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EECSSCEEEEEECSSSSEEEEEECTTTCEEEE
T ss_pred ---cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-EeCCCcEEEEEECCCCCeEEEEeecCCCcEEE
Confidence 568889999999998877788766 799999999776544333 24567899999999999999954 8999999
Q ss_pred EEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCC
Q 002086 756 WKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSR 835 (969)
Q Consensus 756 Wdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~ 835 (969)
|++.+++.. .......+ ........++|++.++++++.+
T Consensus 332 ~~~~~~~~~----~~~~~~~h-------------------------------------~~~v~~~~~s~dg~~l~s~~~d 370 (401)
T 4aez_A 332 WSYSSSGLT----KQVDIPAH-------------------------------------DTRVLYSALSPDGRILSTAASD 370 (401)
T ss_dssp EEEETTEEE----EEEEEECC-------------------------------------SSCCCEEEECTTSSEEEEECTT
T ss_pred EecCCccce----eEEEecCC-------------------------------------CCCEEEEEECCCCCEEEEEeCC
Confidence 999873110 00000000 0112234678999999999999
Q ss_pred CccccCCCCCCcccc
Q 002086 836 RLLPPLPKKTNKVER 850 (969)
Q Consensus 836 ~~L~~~~~~s~~~~~ 850 (969)
+.+..|...++....
T Consensus 371 g~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 371 ENLKFWRVYDGDHVK 385 (401)
T ss_dssp SEEEEEECCC-----
T ss_pred CcEEEEECCCCcccc
Confidence 999999887665443
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-28 Score=291.08 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=200.6
Q ss_pred eeEecccccCEEEEEEeCC------CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 444 CQEIQAHEGSIWTIKFSLD------ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpD------g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
...+.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.+++....
T Consensus 200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~----------------------------- 250 (524)
T 2j04_B 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH----------------------------- 250 (524)
T ss_dssp EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-----------------------------
T ss_pred EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-----------------------------
Confidence 3557789999999999997 57999999999999999975432100
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-EEE-EeecCC
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-CLK-LFAHND 595 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-~i~-~~~h~~ 595 (969)
......++...+.+|...|++++|+++..|++|+.||+|++||+.++. +.. ..+|..
T Consensus 251 ---------------------~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~ 309 (524)
T 2j04_B 251 ---------------------VFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS 309 (524)
T ss_dssp ---------------------EEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSS
T ss_pred ---------------------cceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccc
Confidence 000011234467899999999999987799999999999999999764 333 348999
Q ss_pred CeEEE--EEecCCC-CEEEEEECCCeEEEEeCCCceEE-EEecCC--CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 596 YVTCI--QFNPMDD-DYFISGSLDAKVRIWSISDRLVV-DWTDLH--EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 596 ~V~sv--~fsp~~~-~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~--~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.|++| +|+| ++ .+|++|+.|++|+|||+++++.. .+..+. ..|.+++|+|+++.|++++.|++|++||++.+.
T Consensus 310 ~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 310 YILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp CEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred cEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence 99999 4566 66 89999999999999999886543 222333 347899999999999999999999999999876
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----c-e---------EE-------------
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----I-V---------HK------------- 722 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----~-~---------~~------------- 722 (969)
.... ..+|...|++++|+|++ ..|++|+.|++|++||... . . ..
T Consensus 389 ~~~~--------l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~ 459 (524)
T 2j04_B 389 AVHP--------LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR 459 (524)
T ss_dssp CCEE--------EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEE
T ss_pred ccee--------eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEE
Confidence 5332 14689999999999998 6899999999999998321 0 0 00
Q ss_pred -----------------EEeecCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCC
Q 002086 723 -----------------FRGFRNTSSQISAAFNADG---KYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 -----------------~~~~~~~~~V~sl~fspdg---~~LaSgs~Dg~I~IWdl~t 760 (969)
.....|...|.+++|+|++ ..||+|+.||.|+||++.-
T Consensus 460 ~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 460 IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 1112355678899999995 4999999999999999974
No 89
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=5.5e-28 Score=276.86 Aligned_cols=255 Identities=18% Similarity=0.279 Sum_probs=211.1
Q ss_pred eeeEecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
.+..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++....
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------------------------- 118 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------------------------- 118 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------------------------
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------------------------
Confidence 3456889999999999999 99999999999999999998653211
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLF---AHNDY 596 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~ 596 (969)
...+++..+.+|...|.+++|+| + .+|++++.|++|++||+.+++++..+ .|...
T Consensus 119 --------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 119 --------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp --------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred --------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 01123457889999999999999 4 69999999999999999999998877 59999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCC-EEEEEEccCCCEEEEE---eCCCcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEM-VTAACYTPDGQNALIG---SHKGSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~-V~sv~fspdg~~Lasg---s~dg~I~IwDl~~~~~ 670 (969)
|.+++|+| ++.+|++++.||.|++||+++++.+... .|... +.+++|+|++.+|++| +.|+.|++||+++...
T Consensus 179 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 179 IYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred eEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 99999999 9999999999999999999998877654 55554 8999999999999999 7899999999988654
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
.... ....+...+.+++|+|++..++++++.|+.|++||.... ...+..+.+...|.+++|+|++.++++
T Consensus 258 ~~~~------~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s- 330 (402)
T 2aq5_A 258 PLSL------QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN- 330 (402)
T ss_dssp CSEE------EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-
T ss_pred CceE------EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-
Confidence 1111 113466789999999998444456668999999996643 456666767788999999999998875
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
.++.+++|++.+
T Consensus 331 -~~~~~~~~~l~~ 342 (402)
T 2aq5_A 331 -KCEIARFYKLHE 342 (402)
T ss_dssp -GTEEEEEEEEET
T ss_pred -cceeEEEEEcCC
Confidence 567999999987
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=2.2e-27 Score=263.49 Aligned_cols=244 Identities=10% Similarity=0.051 Sum_probs=200.8
Q ss_pred ecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEec-ccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 447 IQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEV-QECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl-~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+.+|.+.|++++|+|+++ +|++|+.||.|++||+ .+++.
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--------------------------------------- 92 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--------------------------------------- 92 (342)
T ss_dssp EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---------------------------------------
T ss_pred eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---------------------------------------
Confidence 457999999999999999 9999999999999998 76533
Q ss_pred CCCCCCCcccccceeeecCCCceeEecc--CCCCEEEEEecCCcEEEEEeCCCcEEEEECCC---------CcEEEEeec
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIG--HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMET---------KSCLKLFAH 593 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~g--H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t---------~~~i~~~~h 593 (969)
..+.+ |...|.+++|+++.+|++++.|+.|++||+.+ ++++..+.|
T Consensus 93 -----------------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T 1yfq_A 93 -----------------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149 (342)
T ss_dssp -----------------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred -----------------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEee
Confidence 14456 99999999999988999999999999999988 777777789
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ce---EEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RL---VVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~---~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~ 668 (969)
...|.+++|+| +. |++++.|+.|++||+++ +. ......+...+.+++|+| ++++|++++.+|.|++|++...
T Consensus 150 ~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 150 KNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 99999999997 44 99999999999999988 43 234456778899999999 9999999999999999999876
Q ss_pred ------ceeeeeeeee-cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC-CCCeEEEEEeCC
Q 002086 669 ------KLHQLNQVDF-QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN-TSSQISAAFNAD 740 (969)
Q Consensus 669 ------~~~~~~~~~~-~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~-~~~V~sl~fspd 740 (969)
+......... ......|...|.+++|+|++ .+|++++.||.|++||............+ ...|.+++ |+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~ 303 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CS 303 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--EC
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CC
Confidence 3222211000 00011335599999999988 78999999999999998877666666666 78899998 99
Q ss_pred CCEEEEEeCCCc-EEEEEc
Q 002086 741 GKYIISASEDSQ-VYVWKR 758 (969)
Q Consensus 741 g~~LaSgs~Dg~-I~IWdl 758 (969)
+++|++++.||+ .+.|..
T Consensus 304 ~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 304 DNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SSEEEEEEECTHHHHCSSS
T ss_pred CCeEEEEecCCcccccccc
Confidence 999999999999 666554
No 91
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.2e-27 Score=273.95 Aligned_cols=258 Identities=22% Similarity=0.305 Sum_probs=209.9
Q ss_pred eEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..+.+|.+.|++|+|+|+ +.+||+++.||.|+|||+.+......
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----------------------------------- 166 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----------------------------------- 166 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------
Confidence 346689999999999997 77999999999999999875211000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcE-------EEEe-ec
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSC-------LKLF-AH 593 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~-------i~~~-~h 593 (969)
.....+++..+.+|...|++++|++ +. +|++|+.||+|++||+..+.. ...+ .|
T Consensus 167 ----------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h 230 (430)
T 2xyi_A 167 ----------------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 230 (430)
T ss_dssp ----------------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC
T ss_pred ----------------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC
Confidence 0001234557889999999999999 55 999999999999999987421 2233 79
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~ 668 (969)
...|.+++|+|.++.+|++++.||.|++||++++ .+..+..|...|++++|+|++. +|++|+.||.|++||++..
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 9999999999967789999999999999999876 3445567889999999999987 6889999999999999974
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--------------ceEEEEeecCCCCeEE
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--------------IVHKFRGFRNTSSQIS 734 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--------------~~~~~~~~~~~~~V~s 734 (969)
... ......|...|++++|+|++..+|++++.|+.|+|||+.. ....+....|...|.+
T Consensus 311 ~~~-------~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 383 (430)
T 2xyi_A 311 KLK-------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383 (430)
T ss_dssp TSC-------SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred CCC-------eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence 321 1112568899999999999877899999999999999765 2334444556778999
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEEcCC
Q 002086 735 AAFNADGK-YIISASEDSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~-~LaSgs~Dg~I~IWdl~t 760 (969)
++|+|++. +|++++.||.|+||++.+
T Consensus 384 ~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 384 FSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99999999 999999999999999976
No 92
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.3e-27 Score=277.42 Aligned_cols=297 Identities=13% Similarity=0.201 Sum_probs=215.7
Q ss_pred eEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEE---eecCCCeEEEEEecCCCCEEEEEECCCeEEEE
Q 002086 548 CSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKL---FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~---~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IW 622 (969)
....+|...|++|+|+| +.+|++|+.||+|+|||+.+++.... .+|.+.|++|+|+|.++++|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 35678999999999998 57999999999999999987764433 37999999999998678999999999999999
Q ss_pred eCCCceEEEEecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 623 SISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 623 Dl~~~~~~~~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
|++++....+..+. ..+.+++|+|++.+|++|+.||.|++||++..... ....|...|++++|+|++.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~---------~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW---------NLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC---------CSBCCSSCEEEEEECTTCS
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE---------EEecccceEEeeeecCCCc
Confidence 99987765554433 45789999999999999999999999999764321 2267899999999999987
Q ss_pred ceEEEEeCCCcEEEEeCCcceE---EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEeccc
Q 002086 700 SEVLVTSADSRIRILDGLDIVH---KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRN 776 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~~~---~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~ 776 (969)
.++++++.|+.|+|||+..... ......|...|++++|+|+|.+|++++.||.|+|||+.+++. ......+
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~------~~~~~~~ 337 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC------PLGLIPH 337 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS------EEEECCC
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc------ceEEecc
Confidence 7899999999999999764321 122345778899999999999999999999999999987432 2222111
Q ss_pred CCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccC-CCCccccCCCCCCccccCCC-C
Q 002086 777 HEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGH-SRRLLPPLPKKTNKVERVPS-P 854 (969)
Q Consensus 777 ~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~-~~~~L~~~~~~s~~~~~~l~-~ 854 (969)
..... .+.. .....+ ..........+++++...++.+ .+..+..|...++....++. .
T Consensus 338 ~~~~~--------~~~~------~~~~~~------~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~ 397 (435)
T 4e54_B 338 PHRHF--------QHLT------PIKAAW------HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397 (435)
T ss_dssp CCCCC--------SSSC------CCBCEE------CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred ccccc--------ccce------eEEEEE------cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence 11000 0000 000011 1112223444566666655544 44578899888887776665 4
Q ss_pred CCCCcccc-ccCCCCCCccccC-CCccc
Q 002086 855 PEEELSLI-SHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 855 pee~l~~i-s~hP~~~~~~~~s-~~~~r 880 (969)
+...+.++ .+||... .|+++ +.+++
T Consensus 398 ~~~~v~s~~~fspdg~-~lasg~d~~i~ 424 (435)
T 4e54_B 398 ESSGISSLNEFNPMGD-TLASAMGYHIL 424 (435)
T ss_dssp SCCCCCCEEEECTTSS-CEEEECSSEEE
T ss_pred CCCcEEEEEEECCCCC-EEEEEcCCcEE
Confidence 55566666 4688754 44443 44444
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=5e-26 Score=262.73 Aligned_cols=283 Identities=15% Similarity=0.205 Sum_probs=227.2
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.++.|+||++ ++||+|. |++|+|||+.+|+++..+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~------------------------------------------- 141 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL------------------------------------------- 141 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-------------------------------------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-------------------------------------------
Confidence 3678999975 5777765 999999999998876532
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEE
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYF 610 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L 610 (969)
.+.+|...|++|+|+| +++|++|+.||+|+|||+.+++++..+ +|...|.++.++ +.+|
T Consensus 142 ----------------~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l 202 (420)
T 4gga_A 142 ----------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYIL 202 (420)
T ss_dssp ----------------ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEE
T ss_pred ----------------EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEE
Confidence 3456889999999999 899999999999999999999998887 899999999885 5899
Q ss_pred EEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 611 ISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
++|+.|+.+++||.... .+..+..|...+..+.++|++.++++++.|+.|++|++..++.... .......|...
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~----~~~~~~~~~~~ 278 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV----PLQTFTQHQGA 278 (420)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC----CSEEECCCSSC
T ss_pred EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce----eeeeecccCCc
Confidence 99999999999999764 3455677889999999999999999999999999999988764221 11223678889
Q ss_pred eEEEEEcCCCCceEEEE--eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCCcc
Q 002086 689 ITGFQFSPSNPSEVLVT--SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS--EDSQVYVWKREEHRNA 764 (969)
Q Consensus 689 It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs--~Dg~I~IWdl~t~~~~ 764 (969)
|.+++|+|.+..+++++ +.|++|++||..+........ ....+.++.|+++++.|++++ .|+.|+|||+.++
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--- 354 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 354 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---
Confidence 99999999987777765 479999999988765544433 456789999999999998876 7999999999873
Q ss_pred CCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCC
Q 002086 765 STGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 765 ~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
+.+..+..+...+ ...+++|++.++++++.|+.+..|...
T Consensus 355 ---~~v~~l~gH~~~V-------------------------------------~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 355 ---AKVAELKGHTSRV-------------------------------------LSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ---CEEEEECCCSSCE-------------------------------------EEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ---cEEEEEcCCCCCE-------------------------------------EEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 3333332222211 123568999999999999999999765
Q ss_pred CCc
Q 002086 845 TNK 847 (969)
Q Consensus 845 s~~ 847 (969)
...
T Consensus 395 ~~~ 397 (420)
T 4gga_A 395 ELD 397 (420)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=1.3e-26 Score=263.21 Aligned_cols=273 Identities=13% Similarity=0.063 Sum_probs=204.9
Q ss_pred eeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-------EEEEeecCCCeEEEEEecCC----C---CEEEE
Q 002086 547 FCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-------CLKLFAHNDYVTCIQFNPMD----D---DYFIS 612 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-------~i~~~~h~~~V~sv~fsp~~----~---~~L~s 612 (969)
...+.+|.+.|++++|++ ++|++|+.||+|++||+.+++ ......|...|.+++|+| + + .+|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEE
Confidence 346789999999999999 999999999999999999987 444558999999999999 7 8 89999
Q ss_pred EECCCeEEEEeCCCce------EEEEecC-----CCCEEEEEEc----cCCCE-EEEEeCCCcEEEEEcCC------Cce
Q 002086 613 GSLDAKVRIWSISDRL------VVDWTDL-----HEMVTAACYT----PDGQN-ALIGSHKGSCRLYSIED------SKL 670 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~------~~~~~~~-----~~~V~sv~fs----pdg~~-Lasgs~dg~I~IwDl~~------~~~ 670 (969)
++.||.|++||+.++. ...+..+ ...|.+++|+ |++.+ |++++.||.|++||+.. .+.
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 9999999999998877 5555666 4889999999 99999 99999999999999987 443
Q ss_pred eeeeee-eec---ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec---C---CCCeEEEEEeCC
Q 002086 671 HQLNQV-DFQ---TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR---N---TSSQISAAFNAD 740 (969)
Q Consensus 671 ~~~~~~-~~~---~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~---~---~~~V~sl~fspd 740 (969)
...... .+. .....|...|.+++|+|++ ++++++.|+.|++||............ | ...|.+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 220000 000 0014578899999999987 999999999999999876655555544 6 788999999999
Q ss_pred CCEEEEEeCC---CcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCC
Q 002086 741 GKYIISASED---SQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNP 817 (969)
Q Consensus 741 g~~LaSgs~D---g~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~ 817 (969)
+.+|++++.| |.|++||+.++ +.+.........- . . ...........
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~------~~~~~~~~~~~~~--------------------~-~---~~~~~~~~~~v 294 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFG------ERIGSLSVPTHSS--------------------Q-A---SLGEFAHSSWV 294 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTC------CEEEEECBC--------------------------------CCBSBSSCE
T ss_pred CCEEEEEecCCCCceEEEEECCCC------cccceeccCcccc--------------------c-c---cccccccCCcE
Confidence 9999999999 99999999874 2222221100000 0 0 00000011223
Q ss_pred cccccCCCCCCccccCCCCccccCCCCCCccccCCC
Q 002086 818 TSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPS 853 (969)
Q Consensus 818 ~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~ 853 (969)
....++|++.++++++.++.+..|...++.....+.
T Consensus 295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 295 MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 345678899999999999999999887776555544
No 95
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=2.2e-26 Score=253.05 Aligned_cols=251 Identities=14% Similarity=0.171 Sum_probs=194.4
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC--cEEEEe-ecCCCeEEEEEecC-CCCEEEEEECCCeEEEEe
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK--SCLKLF-AHNDYVTCIQFNPM-DDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~--~~i~~~-~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWD 623 (969)
.+.+|.+.|++++|++ +++|++|+.|++|+|||+... +++..+ +|.+.|++++|++. ++.+|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 5778999999999999 899999999999999999753 555555 89999999999762 378999999999999999
Q ss_pred CCCce---EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 624 ISDRL---VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 624 l~~~~---~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
+.++. +..+..|...|.+++|+|+ +.+|++++.|+.|++||++....... .....|...|.+++|+|+.
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~------~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP------IIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC------EEEECCSSCEEEEEECCCC
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee------eeeecccCccceEeecCCc
Confidence 98763 3455668889999999997 89999999999999999987642211 1125788899999999973
Q ss_pred ------------CceEEEEeCCCcEEEEeCCcce----EEEEeecCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEcC
Q 002086 699 ------------PSEVLVTSADSRIRILDGLDIV----HKFRGFRNTSSQISAAFNADG---KYIISASEDSQVYVWKRE 759 (969)
Q Consensus 699 ------------~~~l~sgs~Dg~I~IwD~~~~~----~~~~~~~~~~~V~sl~fspdg---~~LaSgs~Dg~I~IWdl~ 759 (969)
..+|++++.|++|++||..... .......|...|.+++|+|++ .+|++++.|++|+|||+.
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 3689999999999999965422 223344577889999999984 899999999999999997
Q ss_pred CCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccc
Q 002086 760 EHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLP 839 (969)
Q Consensus 760 t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~ 839 (969)
+.... .......... .........++|++.++++++.++.+.
T Consensus 238 ~~~~~----~~~~~~~~~~----------------------------------~~~~v~~~~~s~~g~~las~~~D~~v~ 279 (297)
T 2pm7_B 238 NEQGP----WKKTLLKEEK----------------------------------FPDVLWRASWSLSGNVLALSGGDNKVT 279 (297)
T ss_dssp STTSC----CEEEESSSSC----------------------------------CSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred CCCCc----cceeeeeccc----------------------------------CCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 63210 0000000000 000112345788898999999999999
Q ss_pred cCCC
Q 002086 840 PLPK 843 (969)
Q Consensus 840 ~~~~ 843 (969)
.|..
T Consensus 280 lw~~ 283 (297)
T 2pm7_B 280 LWKE 283 (297)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9954
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=2.4e-26 Score=266.48 Aligned_cols=246 Identities=22% Similarity=0.441 Sum_probs=203.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|++.+++....+.+|.+.|++++| ++++|++|+.||+|+|||+.+++.+.
T Consensus 157 iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--------------------------- 207 (435)
T 1p22_A 157 IWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--------------------------- 207 (435)
T ss_dssp EEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE---------------------------
T ss_pred EEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE---------------------------
Confidence 3466677788889999999999998 78899999999999999998766543
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEE---EE-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCL---KL- 590 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i---~~- 590 (969)
.+.+|...|.+++|++ ++|++|+.||+|++||+.++... ..
T Consensus 208 ----------------------------------~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 252 (435)
T 1p22_A 208 ----------------------------------TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVL 252 (435)
T ss_dssp ----------------------------------EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred ----------------------------------EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence 5667999999999985 69999999999999999987754 23
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.+|...|.+++| ++++|++|+.||.|++||+++++.+. +..|...|.++.| ++.++++|+.||.|++||+++++
T Consensus 253 ~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 253 VGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp CCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC
Confidence 389999999999 47899999999999999999987665 4557788999999 46899999999999999999887
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce---------EEEEeecCCCCeEEEEEeCC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV---------HKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~---------~~~~~~~~~~~V~sl~fspd 740 (969)
..... ..|...|.+++|. + .+|++|+.||.|++||..... .......|...|.+++| +
T Consensus 328 ~~~~~--------~~h~~~v~~~~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~ 394 (435)
T 1p22_A 328 CLRVL--------EGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D 394 (435)
T ss_dssp EEEEE--------CCCSSCEEEEECC--S-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C
T ss_pred EEEEE--------eCCcCcEEEEEec--C-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C
Confidence 65432 5688999999993 3 789999999999999954322 34444567778999999 7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCC
Q 002086 741 GKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+.+|++|+.||.|++||+.+..
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp SSCEEECCSSSEEEEEC-----
T ss_pred CCEEEEEeCCCEEEEEECCCCC
Confidence 8899999999999999998743
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=9.2e-26 Score=261.56 Aligned_cols=234 Identities=20% Similarity=0.326 Sum_probs=202.4
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
...+|...|+|+.| ++++|++|+.||+|+|||+.+++.+.
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~-------------------------------------- 167 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-------------------------------------- 167 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE--------------------------------------
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE--------------------------------------
Confidence 34567888999988 79999999999999999998766544
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
.+.+|.+.|.+++| .+++|++|+.||+|++||+.+++++..+ .|...|.+++|+
T Consensus 168 -----------------------~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~- 222 (435)
T 1p22_A 168 -----------------------ILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN- 222 (435)
T ss_dssp -----------------------EECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-
T ss_pred -----------------------EEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-
Confidence 56689999999999 5689999999999999999999998887 799999999996
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceE----EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLV----VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~----~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
+++|++|+.||.|++||+.++.. .....|...|.+++| ++++|++|+.||.|++||+++++.....
T Consensus 223 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~------ 292 (435)
T 1p22_A 223 --NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL------ 292 (435)
T ss_dssp --TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE------
T ss_pred --CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE------
Confidence 46999999999999999987653 345678889999999 7889999999999999999998765432
Q ss_pred cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..|...|.++.|++ .++++++.|+.|++||............|...|.+++| ++.+|++|+.||.|++||+.+
T Consensus 293 --~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 293 --NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp --ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred --cCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 56888999999953 69999999999999998876665555667888999988 789999999999999999976
Q ss_pred C
Q 002086 761 H 761 (969)
Q Consensus 761 ~ 761 (969)
+
T Consensus 366 ~ 366 (435)
T 1p22_A 366 A 366 (435)
T ss_dssp H
T ss_pred C
Confidence 4
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=2.7e-25 Score=243.70 Aligned_cols=279 Identities=15% Similarity=0.224 Sum_probs=221.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+.+|+||+++ +||+| .|++|+|||+.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-------------------------------------------- 61 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-------------------------------------------- 61 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE--------------------------------------------
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE--------------------------------------------
Confidence 4679999886 77766 4999999999998876632
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~ 611 (969)
.+.+|...|++++|++ +++|++|+.||+|++||+.+++++..+ +|...+.++.+. +..++
T Consensus 62 ---------------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~ 123 (318)
T 4ggc_A 62 ---------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILS 123 (318)
T ss_dssp ---------------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEE
T ss_pred ---------------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEE
Confidence 3456889999999999 899999999999999999999998877 788888887764 68999
Q ss_pred EEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 612 SGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
+++.++.+++|+..... +.....|...+..+.+.+++++|++++.||.|++||+.+++..... ......+...|
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~v 199 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAV 199 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----SEEECCCCSCE
T ss_pred EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----eeeecccCCce
Confidence 99999999999998753 4556778899999999999999999999999999999887643221 12225677889
Q ss_pred EEEEEcCCCCceEE--EEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCCccC
Q 002086 690 TGFQFSPSNPSEVL--VTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS--EDSQVYVWKREEHRNAS 765 (969)
Q Consensus 690 t~l~fspd~~~~l~--sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs--~Dg~I~IWdl~t~~~~~ 765 (969)
.++.++|.+...+. +++.++.|++||........ ...+...+..+.|++++.++++++ .|+.|+|||+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---- 274 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---- 274 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC----
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC----
Confidence 99999998866654 44678999999976654433 344567799999999999888765 7999999999873
Q ss_pred CCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCC
Q 002086 766 TGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 766 t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
+.+..+..+...+ ...+++|++.++++++.|+.+..|...
T Consensus 275 --~~~~~l~gH~~~V-------------------------------------~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 275 --AKVAELKGHTSRV-------------------------------------LSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp --CEEEEECCCSSCE-------------------------------------EEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred --cEEEEEcCCCCCE-------------------------------------EEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 3333332222221 123568888899999999999999654
No 99
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=6.3e-26 Score=257.26 Aligned_cols=291 Identities=15% Similarity=0.191 Sum_probs=223.6
Q ss_pred CCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe--------------ecCCCeEEEEEecCCC
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF--------------AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~--------------~h~~~V~sv~fsp~~~ 607 (969)
.+....+.+|.+.|++++|+| +++|++|+.||.|++||+.+++....+ +|...|.+++|+|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 345567888999999999998 689999999999999999987654433 3999999999999667
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDG---QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg---~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
.+|++++.||.|++||+.+++......+...+.++.|++.+ .++++++.+|.|++||+.+++..... ..
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------~~ 184 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL--------QG 184 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE--------CC
T ss_pred cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee--------cC
Confidence 79999999999999999999998888889999999999954 49999999999999999987654332 56
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe----------------ecCCCCeEEEEEeCCCCEEEEEe
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG----------------FRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~----------------~~~~~~V~sl~fspdg~~LaSgs 748 (969)
|...|.+++|+|++..++++++.|+.|++||.......+.. ..+...|.+++|+|++++|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 88999999999998657999999999999997643211111 34677899999999999999999
Q ss_pred CCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCC
Q 002086 749 EDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEG 828 (969)
Q Consensus 749 ~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~ 828 (969)
.||.|++||+.+++...... ....... ............+..
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~------~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNY------GKVCNNS--------------------------------KKGLKFTVSCGCSSE 306 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCC------CCCCCCC--------------------------------SSCCCCEECCSSSSC
T ss_pred CCCeEEEEECCCCccceecc------ccccccc--------------------------------cccceeEEecCCCce
Confidence 99999999999854322111 0000000 000000011111223
Q ss_pred ccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccC-CCccc
Q 002086 829 SPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 829 i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s-~~~~r 880 (969)
++..+.++.+..|...++.....+..|...+.++.++|....+++.+ +..++
T Consensus 307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence 44456677889998888888888888999999999999876566554 44555
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=5.2e-26 Score=262.51 Aligned_cols=285 Identities=15% Similarity=0.255 Sum_probs=201.6
Q ss_pred cceeeeEecccc------------cCEEEEEEeCCC--CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCC
Q 002086 440 ALHLCQEIQAHE------------GSIWTIKFSLDA--RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSD 505 (969)
Q Consensus 440 ~~~l~~~L~gH~------------~~I~~l~fSpDg--~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~ 505 (969)
.+++...+++|. +.|++|+|+|++ .+|++++.|++|+|||+.+++......... ...
T Consensus 70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~---------~~~ 140 (447)
T 3dw8_B 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLK---------EED 140 (447)
T ss_dssp CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC------------
T ss_pred ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceeccc---------Ccc
Confidence 344688899998 899999999998 799999999999999998766543110000 000
Q ss_pred CCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEe-ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC
Q 002086 506 KASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSF-IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME 583 (969)
Q Consensus 506 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l-~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~ 583 (969)
|..... .......+.......+.....+...+ .+|...|.+++|+| +.+|++| .|++|++||+.
T Consensus 141 ------g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 206 (447)
T 3dw8_B 141 ------GRYRDP-------TTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLE 206 (447)
T ss_dssp -----------C-------CCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETT
T ss_pred ------ccccCc-------ccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECC
Confidence 000000 00000000000000011112222333 68999999999999 7899998 89999999999
Q ss_pred -CCcEEEEe--------ecCCCeEEEEEecCCC-CEEEEEECCCeEEEEeCCCceE-----EEEecCCC-----------
Q 002086 584 -TKSCLKLF--------AHNDYVTCIQFNPMDD-DYFISGSLDAKVRIWSISDRLV-----VDWTDLHE----------- 637 (969)
Q Consensus 584 -t~~~i~~~--------~h~~~V~sv~fsp~~~-~~L~sgs~Dg~I~IWDl~~~~~-----~~~~~~~~----------- 637 (969)
.++++..+ +|...|++++|+| ++ .+|++|+.||.|++||++++.. ..+..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (447)
T 3dw8_B 207 ITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEII 285 (447)
T ss_dssp EEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHT
T ss_pred CCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccC
Confidence 45555533 7999999999999 76 9999999999999999998774 44555554
Q ss_pred -CEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeeecccccCCCC---------------CeEEEEEcCCCCc
Q 002086 638 -MVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQLNQVDFQTKKKSSTR---------------KITGFQFSPSNPS 700 (969)
Q Consensus 638 -~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~---------------~It~l~fspd~~~ 700 (969)
.|.+++|+|++++|++++. +.|++||++. ++...... .|.. .+..++|+|++ .
T Consensus 286 ~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~ 355 (447)
T 3dw8_B 286 SSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--------VHEYLRSKLCSLYENDCIFDKFECCWNGSD-S 355 (447)
T ss_dssp TCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--------SCGGGTTTHHHHHHTSGGGCCCCEEECTTS-S
T ss_pred ceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee--------ccccccccccccccccccccceEEEECCCC-C
Confidence 8999999999999999999 9999999986 55433221 1211 13459999998 7
Q ss_pred eEEEEeCCCcEEEEeCCcceEE-EEee-------------------------------cCCCCeEEEEEeCCCCEEEEEe
Q 002086 701 EVLVTSADSRIRILDGLDIVHK-FRGF-------------------------------RNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~~~~~-~~~~-------------------------------~~~~~V~sl~fspdg~~LaSgs 748 (969)
+|++++.|+.|++||....... +..+ .....|..++|+|++.+||+++
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence 8999999999999997654322 2211 2235688999999999999998
Q ss_pred CCCcEEEEEcC
Q 002086 749 EDSQVYVWKRE 759 (969)
Q Consensus 749 ~Dg~I~IWdl~ 759 (969)
.++ +++|.-+
T Consensus 436 ~~~-~~~~~~~ 445 (447)
T 3dw8_B 436 TNN-LYIFQDK 445 (447)
T ss_dssp SSC-EEEEECC
T ss_pred cce-eeeeccc
Confidence 775 8888754
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=5.4e-26 Score=253.66 Aligned_cols=250 Identities=15% Similarity=0.230 Sum_probs=200.3
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
..+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------------- 122 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ------------------------------------- 122 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-------------------------------------
Confidence 4467899999999999999999999999999999998766543
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEe--cC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSW--SR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~f--s~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
+.+|...|.+++| ++ +.+|++++.||.|++||+.+++++..+.....+.++.
T Consensus 123 -------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 123 -------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177 (368)
T ss_dssp -------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred -------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence 3458999999999 77 6889999999999999999999998887777888888
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEE---ecCCCCEEEEEEccCCCE----EEEEeCCCcEEEEEcCCCce-eee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDW---TDLHEMVTAACYTPDGQN----ALIGSHKGSCRLYSIEDSKL-HQL 673 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~---~~~~~~V~sv~fspdg~~----Lasgs~dg~I~IwDl~~~~~-~~~ 673 (969)
+.+ ..+++++.++.+++|++........ ......+.++++.++... +++++.||.|++||+..... ...
T Consensus 178 ~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 178 VIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp EET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred ecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 864 5888999999999999987643322 123356777777776654 99999999999999988742 111
Q ss_pred eeeeec------ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 674 NQVDFQ------TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 674 ~~~~~~------~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
..+... .....|...|++++|+|++ .+|++++.|+.|++||............|...|.+++|+|+|++|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp EEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred eeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE
Confidence 111000 0011222379999999988 799999999999999988776666666778899999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.|+..+.|++.+
T Consensus 334 s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 334 SSYDWSKGHEFYN 346 (368)
T ss_dssp ECCCSTTCGGGCC
T ss_pred ecccccccccccC
Confidence 9998777666554
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=6.8e-26 Score=256.17 Aligned_cols=252 Identities=10% Similarity=0.109 Sum_probs=181.3
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
.+...+.+.++.+|.+.|++++|+|||++||+|+.|+ ++||++.+++.....
T Consensus 5 s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~--------------------------- 56 (355)
T 3vu4_A 5 SMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ--------------------------- 56 (355)
T ss_dssp --------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---------------------------
T ss_pred cccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---------------------------
Confidence 4444555667789999999999999999999998775 789998876554311
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE-EEEEeCCCcEEEEECCCCcEEEEeecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL-LLSSSMDKTVRLWDMETKSCLKLFAHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~-L~Sgs~DgtV~IWDl~t~~~i~~~~h~ 594 (969)
+...+..+.+.+ ++. +++++.|++|+|||+.+++++..+.|.
T Consensus 57 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~ 100 (355)
T 3vu4_A 57 ------------------------------------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD 100 (355)
T ss_dssp ------------------------------------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECS
T ss_pred ------------------------------------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECC
Confidence 111355566665 444 467888999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEE--EeCCCcEEEEEcCCCcee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALI--GSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Las--gs~dg~I~IwDl~~~~~~ 671 (969)
..|.+++|++ +.++++ .|+.|++||+.++ +.+..... ....+++++ .++++ |+.+|.|++||+.++...
T Consensus 101 ~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~ 172 (355)
T 3vu4_A 101 APVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSA 172 (355)
T ss_dssp SCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC----
T ss_pred CceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcc
Confidence 9999999986 344444 4789999999887 44332222 455667777 56666 588999999999876511
Q ss_pred eeeee-------ee-cccccCCCCCeEEEEEcCCCCceEEEEeCCCc-EEEEeCCcceEEEEee-c-CCCCeEEEEEeCC
Q 002086 672 QLNQV-------DF-QTKKKSSTRKITGFQFSPSNPSEVLVTSADSR-IRILDGLDIVHKFRGF-R-NTSSQISAAFNAD 740 (969)
Q Consensus 672 ~~~~~-------~~-~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~-I~IwD~~~~~~~~~~~-~-~~~~V~sl~fspd 740 (969)
..... .. .....+|...|++++|+|++ .+|++++.|++ |+|||..+........ . |...|.+++|+|+
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~ 251 (355)
T 3vu4_A 173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD 251 (355)
T ss_dssp --------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTT
T ss_pred ccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCC
Confidence 00000 00 12237899999999999988 89999999998 9999987655544444 2 7788999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 002086 741 GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|++|++++.|++|+|||+..+
T Consensus 252 ~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 252 GSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SCEEEEEETTCEEEEEESSCC
T ss_pred CCEEEEEECCCEEEEEEccCC
Confidence 999999999999999999875
No 103
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=1.6e-25 Score=254.39 Aligned_cols=198 Identities=19% Similarity=0.198 Sum_probs=165.4
Q ss_pred cccccCEEEEEEeCCCCEEEEEe--CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAG--EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs--~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
..+...+.+++|||||++||+++ .|++|+|||+.+++.+.
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~-------------------------------------- 171 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF-------------------------------------- 171 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE--------------------------------------
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE--------------------------------------
Confidence 45667799999999999887554 79999999999877654
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQ 601 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~ 601 (969)
.+ .|...|++|+|+| +++|++++. +.+++|+..+++.+... .|...|.+++
T Consensus 172 -----------------------~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 172 -----------------------EI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp -----------------------EE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred -----------------------Ee-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 22 3777899999999 788888875 55777777777766433 6888999999
Q ss_pred EecCCCCEEEEEECCC----eEEEEeCCCceE-----EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 602 FNPMDDDYFISGSLDA----KVRIWSISDRLV-----VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg----~I~IWDl~~~~~-----~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
|+| ++.++++++.|+ .+++|++..... ..+..+...|++++|+|+|++||+|+.|++|+|||+.+++...
T Consensus 227 fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 227 FIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp EEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence 999 999999999887 688999876543 3456778899999999999999999999999999999987643
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
.. ..+|...|++++|+|++ .+|++++.|++|+|||+.
T Consensus 306 ~~-------~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 306 IF-------KQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EE-------TTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECC
T ss_pred Ee-------cCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcC
Confidence 21 26799999999999998 899999999999999964
No 104
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=8.4e-26 Score=251.70 Aligned_cols=297 Identities=13% Similarity=0.130 Sum_probs=213.1
Q ss_pred hccCCCcceeeeeccccc-ccccCCCC---cccccccccccccccccccccccceeeeeEEEeeecCCc---cccCCCCc
Q 002086 333 KSVGHSPVVKELMRRENV-NRINDSAG---KFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDK---ECINPNPL 405 (969)
Q Consensus 333 ~~~GHs~~V~~l~~~~~~-~~~~t~s~---d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~---~~~~~~~l 405 (969)
...||...|.++++..+. ..+++++. |..+..|.....+...... ........++.|+++. ..++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~--- 85 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE----IEKAKPIKCGTFGATSLQQRYLAT--- 85 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE----EEESSCEEEEECTTCCTTTCCEEE---
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee----ecccCcEEEEEEcCCCCCCceEEE---
Confidence 346899999999976655 55566654 7777777543222211111 1223344555555552 22111
Q ss_pred ccchHHHHHHhhccccCcceEEEccCCCcccccccce-eeeEecccccCEEEEEE------eCCCCEEEEEeCCCcEEEE
Q 002086 406 LGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALH-LCQEIQAHEGSIWTIKF------SLDARFLASAGEDRVIHVW 478 (969)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~-l~~~L~gH~~~I~~l~f------SpDg~~LaTgs~DgtVrIW 478 (969)
...++.+. +|++...+ .+..+.+|.+.|.+++| +|++++|++|+.|+.|++|
T Consensus 86 ------------~~~dg~i~---------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 86 ------------GDFGGNLH---------IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp ------------EETTSCEE---------EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred ------------ecCCCeEE---------EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 11222222 33555555 67889999999999955 6799999999999999999
Q ss_pred ecccce-EEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccC----
Q 002086 479 EVQECE-VMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGH---- 553 (969)
Q Consensus 479 Dl~tg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH---- 553 (969)
|+.+++ .+. .+..|
T Consensus 145 d~~~~~~~~~-------------------------------------------------------------~~~~~~~~~ 163 (357)
T 3i2n_A 145 DPRQKDDPVA-------------------------------------------------------------NMEPVQGEN 163 (357)
T ss_dssp CTTSCSSCSE-------------------------------------------------------------EECCCTTSC
T ss_pred eCCCCCCcce-------------------------------------------------------------eccccCCCC
Confidence 998654 222 22222
Q ss_pred CCCEEEEE----ecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC--CCCEEEEEECCCeEEEEeCCC
Q 002086 554 LDDVLDLS----WSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM--DDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 554 ~~~I~~l~----fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~--~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
...|.++. |++ +.+|++++.||.|++||+.++++.....|...|.+++|+|. ++.+|++++.||.|++||+++
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 34788888 666 78999999999999999999999888899999999999985 578999999999999999987
Q ss_pred ceEE------EEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeee-----------eeeecccccCCCCC
Q 002086 627 RLVV------DWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLN-----------QVDFQTKKKSSTRK 688 (969)
Q Consensus 627 ~~~~------~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~-----------~~~~~~~~~~h~~~ 688 (969)
+... ....|...|++++|+|++. +|++++.||.|++||+......... ..........|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 6432 2337889999999999998 8999999999999999865432100 00112233678899
Q ss_pred eEEEEEcCCCCceEE-EEeCCCcEEEEeCCcc
Q 002086 689 ITGFQFSPSNPSEVL-VTSADSRIRILDGLDI 719 (969)
Q Consensus 689 It~l~fspd~~~~l~-sgs~Dg~I~IwD~~~~ 719 (969)
|++++|+|++ .+|+ +++.|+.|++||+.+.
T Consensus 324 v~~~~~s~~~-~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 324 ISSLDWSPDK-RGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEECSSS-TTEEEEEETTSEEEEEEECC-
T ss_pred eeEEEEcCCC-CeEEEEecCCCcEEEEECCCc
Confidence 9999999998 5555 8999999999996543
No 105
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.9e-26 Score=264.35 Aligned_cols=256 Identities=14% Similarity=0.166 Sum_probs=177.9
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
..+|.+.+....+.+++.+||+|+.|++|+|||+.+++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~------------------------------------- 127 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH------------------------------------- 127 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE-------------------------------------
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee-------------------------------------
Confidence 4467777777788889999999999999999999887654311
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---------CcEEEEEeCCCcEEEEECCCCcEE-EEeecCCC
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---------SHLLLSSSMDKTVRLWDMETKSCL-KLFAHNDY 596 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---------~~~L~Sgs~DgtV~IWDl~t~~~i-~~~~h~~~ 596 (969)
++..+.||.+.|++|+|+| +++|++|+.|++|+|||+.++.++ ..+.|...
T Consensus 128 -------------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 128 -------------------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp -------------------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred -------------------eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 1124678999999999985 479999999999999999877655 55699999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE--------------------------EecCCCCEEEEEEc-cCCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD--------------------------WTDLHEMVTAACYT-PDGQ 649 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~--------------------------~~~~~~~V~sv~fs-pdg~ 649 (969)
|.+++|+|.+..+|++++.|++|++||+++++... ...+...+.++.|+ ++++
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~ 268 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS 268 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC
T ss_pred cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC
Confidence 99999999334689999999999999998764321 12455678888887 7999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeee----------ecccccCCCCCeEEEEEcC-CCCceEEEEeCCCcEEEEeCCc
Q 002086 650 NALIGSHKGSCRLYSIEDSKLHQLNQVD----------FQTKKKSSTRKITGFQFSP-SNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~~~~~~~~~~~----------~~~~~~~h~~~It~l~fsp-d~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.|++++.|+++++||+..++........ ................|+| .+..++++|+.|+.|+|||...
T Consensus 269 ~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~ 348 (393)
T 4gq1_A 269 GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE 348 (393)
T ss_dssp EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC
T ss_pred EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC
Confidence 9999999999999999876543221100 0000011112222334444 3434566778899999999776
Q ss_pred ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 719 IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 719 ~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.........+...|.+++|+|||++||+++.|| |.+|++.
T Consensus 349 ~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 349 KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 555455556677899999999999999998665 7777664
No 106
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.2e-25 Score=240.52 Aligned_cols=282 Identities=19% Similarity=0.277 Sum_probs=215.0
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
+..+.||...|.++++ .+...+++++.|..+..|.... ......+....+...++.|+++...+...
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------- 77 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-----QWLGTVVYTGQGFLNSVCYDSEKELLLFG------- 77 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-----SEEEEEEEECSSCEEEEEEETTTTEEEEE-------
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-----CEEEEEeecCCccEEEEEECCCCCEEEEe-------
Confidence 4667899999999999 6666688888888887776432 22222333334555566666655442221
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..++.+.++. +++....+.+..+.+|...|++++| ++++|++++.|+.|++|| .++.+
T Consensus 78 --------~~dg~i~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~---- 135 (313)
T 3odt_A 78 --------GKDTMINGVP------LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV---- 135 (313)
T ss_dssp --------ETTSCEEEEE------TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE----
T ss_pred --------cCCCeEEEEE------eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE----
Confidence 1222222221 2233444667788999999999999 578999999999999999 33322
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLL 568 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L 568 (969)
..+..|...|.++.|.+ +++|
T Consensus 136 ---------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 136 ---------------------------------------------------------YNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp ---------------------------------------------------------EEEECCSSCEEEEEEEETTTTEE
T ss_pred ---------------------------------------------------------EecccCCCceeEEEEccCCCCEE
Confidence 25667999999999986 7899
Q ss_pred EEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEc
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYT 645 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fs 645 (969)
++++.|+.|++|| .++....+ .|...|.+++|+| ++. |++++.||.|++||+++++.+. +..|...|++++|+
T Consensus 159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence 9999999999999 44555555 3999999999999 665 9999999999999999887665 45588899999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc
Q 002086 646 PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI 719 (969)
Q Consensus 646 pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~ 719 (969)
|++ .|++++.||.|++||+.+++..... ..|...|.+++|+|++ . +++++.|+.|++||....
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVI--------TLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEE--------ECSSSCEEEEEECTTS-C-EEEEETTSCEEEEESCGG
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEE--------eccCceEEEEEEccCC-C-EEEEeCCCcEEEEeCCCC
Confidence 999 6899999999999999998765443 4567799999999998 3 778999999999997653
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=4e-25 Score=253.02 Aligned_cols=243 Identities=13% Similarity=0.221 Sum_probs=196.1
Q ss_pred CEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 453 SIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 453 ~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
....++++|+.. ++++++.||.|+||++.......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------------------------------------- 71 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------------------------------------- 71 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC--------------------------------------------
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC--------------------------------------------
Confidence 445688998775 44568899999999986432210
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC-------cEEEEe-ecCCCeEEEE
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK-------SCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~-------~~i~~~-~h~~~V~sv~ 601 (969)
+.+..+.+|.+.|++++|+| +.+|++|+.||+|+|||+.++ +++..+ +|...|.+++
T Consensus 72 -------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 72 -------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138 (402)
T ss_dssp -------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEE
T ss_pred -------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEE
Confidence 11224678999999999998 689999999999999999987 445444 7999999999
Q ss_pred EecCCC-CEEEEEECCCeEEEEeCCCceEEEEe---cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 602 FNPMDD-DYFISGSLDAKVRIWSISDRLVVDWT---DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 602 fsp~~~-~~L~sgs~Dg~I~IWDl~~~~~~~~~---~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
|+| ++ ++|++++.||.|++||+.+++.+... .|...|.+++|+|++.+|++++.||.|++||+++++......
T Consensus 139 ~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-- 215 (402)
T 2aq5_A 139 WHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-- 215 (402)
T ss_dssp ECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred ECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--
Confidence 999 65 79999999999999999998877654 578899999999999999999999999999999887643321
Q ss_pred ecccccCCCC-CeEEEEEcCCCCceEEEE---eCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEE-EeCC
Q 002086 678 FQTKKKSSTR-KITGFQFSPSNPSEVLVT---SADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIIS-ASED 750 (969)
Q Consensus 678 ~~~~~~~h~~-~It~l~fspd~~~~l~sg---s~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaS-gs~D 750 (969)
..|.. .+.++.|+|++ .+|+++ +.|+.|++||...... ......+...+.+++|+|++++|++ |+.|
T Consensus 216 -----~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 216 -----RPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp -----CSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred -----cCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 24444 48999999987 788888 7999999999765332 2233346677999999999999975 5579
Q ss_pred CcEEEEEcCCC
Q 002086 751 SQVYVWKREEH 761 (969)
Q Consensus 751 g~I~IWdl~t~ 761 (969)
|.|++|++.++
T Consensus 290 g~i~i~d~~~~ 300 (402)
T 2aq5_A 290 SSIRYFEITSE 300 (402)
T ss_dssp SCEEEEEECSS
T ss_pred CeEEEEEecCC
Confidence 99999999874
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=5.7e-24 Score=241.38 Aligned_cols=253 Identities=12% Similarity=0.131 Sum_probs=205.5
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
++++.+.+++..+.+|.. +.+++|+|+|++| ++++.|++|++||+.+++.+..
T Consensus 16 v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------------------------- 69 (391)
T 1l0q_A 16 VIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------------------------- 69 (391)
T ss_dssp EEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------------
T ss_pred EEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-------------------------
Confidence 346677788888887754 8999999999976 6777999999999998876552
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEe
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
+..| ..+.+++|+| +++|+ +++.++.|++||+.+++.+..+
T Consensus 70 ------------------------------------~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~ 112 (391)
T 1l0q_A 70 ------------------------------------VPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112 (391)
T ss_dssp ------------------------------------EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ------------------------------------EECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence 2223 3899999999 66664 5557799999999999999988
Q ss_pred ecCCCeEEEEEecCCCCEE-EEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPMDDDYF-ISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~ 669 (969)
.+...+.+++|+| ++.+| ++++.|+.|++||+.+++.+........+.+++|+|++++| ++++.++.|++||+.+++
T Consensus 113 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 113 KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 8888999999999 88866 78888999999999999988887777889999999999988 567788999999999887
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe---CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEE-E
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS---ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYI-I 745 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs---~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~L-a 745 (969)
..... .+...+.+++|+|++ .++++++ .++.|++||........... ....+.+++|+|+|++| +
T Consensus 192 ~~~~~---------~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 260 (391)
T 1l0q_A 192 VIDTV---------KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYV 260 (391)
T ss_dssp EEEEE---------ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEE
T ss_pred EEEEE---------ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCCCccEEEEccCCCEEEE
Confidence 65332 234578999999998 5666666 78999999987654433332 23457899999999987 6
Q ss_pred EEeCCCcEEEEEcCCCC
Q 002086 746 SASEDSQVYVWKREEHR 762 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~t~~ 762 (969)
+++.|+.|++||+.+++
T Consensus 261 s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 261 ALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EETTTTEEEEEETTTTE
T ss_pred EcCCCCEEEEEECCCCc
Confidence 77889999999999843
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.4e-25 Score=248.61 Aligned_cols=254 Identities=15% Similarity=0.181 Sum_probs=198.7
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC--CCcEEEEe-ecCCCeEEEEEecCC--CCEEEEEECCCeE
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME--TKSCLKLF-AHNDYVTCIQFNPMD--DDYFISGSLDAKV 619 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~--t~~~i~~~-~h~~~V~sv~fsp~~--~~~L~sgs~Dg~I 619 (969)
.+..+.+|.+.|++++|++ +.+|++|+.||.|+|||+. +++.+..+ +|...|++++|++ + +.+|++++.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEE
Confidence 3457889999999999999 8899999999999999998 45555555 7999999999987 5 8999999999999
Q ss_pred EEEeCCCce---EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 620 RIWSISDRL---VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 620 ~IWDl~~~~---~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
++||+.++. ......|...|.+++|+|+ +.+|++++.||.|++||+.......... ...|...|.+++|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------IDAHAIGVNSASW 155 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------EECCTTCEEEEEE
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------ecCCCCceEEEEE
Confidence 999999885 4455567889999999999 9999999999999999999875432222 2568899999999
Q ss_pred cCC------------CCceEEEEeCCCcEEEEeCCcc----eEEEEeecCCCCeEEEEEeCC---CCEEEEEeCCCcEEE
Q 002086 695 SPS------------NPSEVLVTSADSRIRILDGLDI----VHKFRGFRNTSSQISAAFNAD---GKYIISASEDSQVYV 755 (969)
Q Consensus 695 spd------------~~~~l~sgs~Dg~I~IwD~~~~----~~~~~~~~~~~~V~sl~fspd---g~~LaSgs~Dg~I~I 755 (969)
+|. ++.++++++.|+.|++||.... ........|...|.+++|+|+ +.+|++++.||.|+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 994 3489999999999999996532 222334457788999999999 899999999999999
Q ss_pred EEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCC
Q 002086 756 WKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSR 835 (969)
Q Consensus 756 Wdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~ 835 (969)
||+.++.... ......... .........++|++.++++++.+
T Consensus 236 wd~~~~~~~~----~~~~~~~~~----------------------------------~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 236 WTQDNEQGPW----KKTLLKEEK----------------------------------FPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp EEESSTTSCC----EEEESSSSC----------------------------------CSSCEEEEEECSSSCCEEEEESS
T ss_pred EeCCCCCccc----eeeeecccc----------------------------------CCCcEEEEEEcCCCCEEEEecCC
Confidence 9998742110 000100000 01112234578888888888888
Q ss_pred CccccCCCC
Q 002086 836 RLLPPLPKK 844 (969)
Q Consensus 836 ~~L~~~~~~ 844 (969)
+.+..|...
T Consensus 278 g~i~iw~~~ 286 (379)
T 3jrp_A 278 NKVTLWKEN 286 (379)
T ss_dssp SSEEEEEEE
T ss_pred CcEEEEeCC
Confidence 888888654
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.9e-24 Score=251.73 Aligned_cols=290 Identities=12% Similarity=0.056 Sum_probs=201.4
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce---EEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE---VMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~---~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..+|.+++|++||++|+++ .++.|++||+.+|+ .+..+..+.............. ............+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKE----QQGQSSENENENKKLKS 78 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchh----hcccccccccccccccc
Confidence 4578999999999977766 47899999999998 6655443321100000000000 00000000000000000
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECC--CCcEEEEe---ecCCCeEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDME--TKSCLKLF---AHNDYVTCI 600 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~--t~~~i~~~---~h~~~V~sv 600 (969)
..... ...... ....+.....+|.+.|.+++|+| +.+| ++|+.||+|+|||+. +++++..+ .|...|.++
T Consensus 79 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 79 NKGDS--IKRTAA-KVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred CcCcc--ccccCc-cccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence 00000 000000 00111224457888999999999 7775 899999999999999 88888776 678999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEE-----EEecCCCCEEEEEEccC---CCEEEEEeCCCcEEEEEcCCCceee
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVV-----DWTDLHEMVTAACYTPD---GQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-----~~~~~~~~V~sv~fspd---g~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
+|+| ++.+|++|+.||.|++|++.++... .+..|...|++++|+|+ +++|++|+.|+.|++||+.+++...
T Consensus 156 ~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 156 SIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp EECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 9999 9999999999999999999876543 45567889999999999 9999999999999999999877543
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EEEee-----------------------c
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KFRGF-----------------------R 727 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~-----------------------~ 727 (969)
.. ..+|...|.+++|+ ++ .+|++++.|+.|++||...... .+... .
T Consensus 235 ~~-------~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 235 KW-------LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp EE-------CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred ee-------ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence 21 25788999999999 66 8999999999999999765433 33221 2
Q ss_pred CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEc
Q 002086 728 NTSSQISAAFNADGKYIISAS-EDSQVYVWKR 758 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl 758 (969)
....|.+++|+|++++|++++ .|+.|+||++
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 235688999999999999999 8999999999
No 111
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=9.7e-26 Score=250.38 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=167.2
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE--EEEe-ecCCCeEEEEEec-CCCCEEEEEECCCeEEEEe
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC--LKLF-AHNDYVTCIQFNP-MDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~--i~~~-~h~~~V~sv~fsp-~~~~~L~sgs~Dg~I~IWD 623 (969)
.+.+|.+.|++++|++ +++|++|+.|++|+|||+.++.. +..+ +|...|++++|++ .++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4678999999999999 89999999999999999988753 4444 8999999999975 2478999999999999999
Q ss_pred CCCce---EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 624 ISDRL---VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 624 l~~~~---~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
++++. ...+..|...|.+++|+|+ +.+|++|+.|+.|++||+....... .......|...|.+++|+|+.
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-----VKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE-----ECCBTTSSSSCBCCCEECCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc-----eeeeeccccCCcceEEEcccc
Confidence 98863 3455678889999999998 7899999999999999998753211 112236788899999999973
Q ss_pred ----------------CceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCC----CEEEEEeCCCcEEE
Q 002086 699 ----------------PSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSSQISAAFNADG----KYIISASEDSQVYV 755 (969)
Q Consensus 699 ----------------~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg----~~LaSgs~Dg~I~I 755 (969)
..+|++++.|+.|++||.... ........|...|.+++|+|++ .+|++|+.|++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 258999999999999997532 2333345577889999999986 89999999999999
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|++.+
T Consensus 243 w~~~~ 247 (316)
T 3bg1_A 243 WTCDD 247 (316)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99976
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=1.8e-24 Score=238.09 Aligned_cols=293 Identities=13% Similarity=0.144 Sum_probs=205.6
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc----EEEEe-ecCCCeEEEEEecC-CCCEEEEEECCCeEEE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS----CLKLF-AHNDYVTCIQFNPM-DDDYFISGSLDAKVRI 621 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----~i~~~-~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~I 621 (969)
.+.+|.+.|++++|+| +.+|++|+.||.|++||+.++. .+..+ +|...|++++|+|. ++.+|++++.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 5789999999999999 8899999999999999999763 44444 79999999999984 3899999999999999
Q ss_pred EeCCCc---------e-EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeee-----ecccccC
Q 002086 622 WSISDR---------L-VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVD-----FQTKKKS 684 (969)
Q Consensus 622 WDl~~~---------~-~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-----~~~~~~~ 684 (969)
||+..+ + +..+..|...|.+++|+|+ +.+|++++.||.|++||+++.+........ .......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 999875 2 4556678899999999999 999999999999999999987754332211 1112246
Q ss_pred CCCCeEEEEEcCC--CCceEEEEeCCCcEEEEeCCcce--EEEEeecCCCCeEEEEEeCCC----CEEEEEeCCCcEEEE
Q 002086 685 STRKITGFQFSPS--NPSEVLVTSADSRIRILDGLDIV--HKFRGFRNTSSQISAAFNADG----KYIISASEDSQVYVW 756 (969)
Q Consensus 685 h~~~It~l~fspd--~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspdg----~~LaSgs~Dg~I~IW 756 (969)
+...+.++.|+|+ ++..+++++.++.+.+|+..... .......|...|.+++|+|++ .+|++|+.||.|++|
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 7889999999997 34899999999999888855433 244445678889999999998 899999999999999
Q ss_pred EcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCc--ccC-CCCCccE------EEcccccccCCCCcccccCCCCC
Q 002086 757 KREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGM--VKG-EPPPTPV------QTKKHAKRISSNPTSATSSPTKE 827 (969)
Q Consensus 757 dl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~--i~G-~~~~~~v------~~~~~~~~~~~~~~~~~~SP~~~ 827 (969)
|+.++........ ................... ..+ ......+ .................++|++.
T Consensus 246 d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 319 (351)
T 3f3f_A 246 KITEKLSPLASEE------SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT 319 (351)
T ss_dssp EEEECC---------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSC
T ss_pred eCCCCcCccccCC------cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCC
Confidence 9987533221110 0000000000000000000 000 0000000 00000111223345677899999
Q ss_pred CccccCCCCccccCCCCCCc
Q 002086 828 GSPAGHSRRLLPPLPKKTNK 847 (969)
Q Consensus 828 ~i~~~~~~~~L~~~~~~s~~ 847 (969)
++++++.++.+..|....+.
T Consensus 320 ~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 320 ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp CEEEEETTSCEEEEEECTTS
T ss_pred EEEEecCCCcEEEEecCcCc
Confidence 99999999999999876553
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.8e-25 Score=256.76 Aligned_cols=264 Identities=12% Similarity=0.087 Sum_probs=201.8
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.-...|.+++|+|||+++||++.|++|+ |...++. +.++...+..+.+.+.. ....+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~-------- 72 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFE-------- 72 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTS--------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEE--------
Confidence 4568899999999999999999999999 7555443 35666666666555433 11111111
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC-----CeEEEEE
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND-----YVTCIQF 602 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~-----~V~sv~f 602 (969)
...+..+..+ .|...|.+++|+| +.+|++++.||+|+|||..+ ++..+.|.. .|.+++|
T Consensus 73 ------------~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svaf 137 (588)
T 2j04_A 73 ------------LAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEW 137 (588)
T ss_dssp ------------CCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEE
T ss_pred ------------eCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEE
Confidence 0111111111 4688999999999 89999999999999999655 666666554 4999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceE--------EEE----ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLV--------VDW----TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~--------~~~----~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
+| ++++|++|+.||+|+|||+.++.+ ..+ .+|...|.+++|+|+| +++++.|++|++||+.++..
T Consensus 138 SP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 138 NP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp CS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred cC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence 99 999999999999999999998752 333 4566799999999999 88899999999999988763
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEE--eCCCCEEEEEe
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAF--NADGKYIISAS 748 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f--spdg~~LaSgs 748 (969)
..... .....|...|.+++|+ + ..+++++ +++|++||............|...+..+.| +||+..|++++
T Consensus 215 ~~~~~----tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 215 QPVSR----MIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp CCCEE----EEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred cccee----eecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 21000 0013577899999999 4 6888887 699999998876663333368888999999 99999999999
Q ss_pred CCCcEEEEEcC
Q 002086 749 EDSQVYVWKRE 759 (969)
Q Consensus 749 ~Dg~I~IWdl~ 759 (969)
+||+ ++|.++
T Consensus 287 edG~-klw~~d 296 (588)
T 2j04_A 287 KTSY-KVLLED 296 (588)
T ss_dssp SCEE-EEEESS
T ss_pred CCCC-EEEeec
Confidence 9999 999987
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-25 Score=249.86 Aligned_cols=230 Identities=13% Similarity=0.131 Sum_probs=178.0
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccccc
Q 002086 457 IKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVP 536 (969)
Q Consensus 457 l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (969)
..+.+++.+|++|+.||+|+|||+.+++.+..+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------------------------------- 75 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------------------------------------------- 75 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------------------------------------------
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------------------------------------------
Confidence 3445688899999999999999999877655321
Q ss_pred ceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECC---------CCcEEEEe--ecCCCeEEEEEec-
Q 002086 537 ETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDME---------TKSCLKLF--AHNDYVTCIQFNP- 604 (969)
Q Consensus 537 ~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~---------t~~~i~~~--~h~~~V~sv~fsp- 604 (969)
...|.++.|+|. +++++.|++|++|+.. +++.+..+ +|...|.+++|+|
T Consensus 76 -----------------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 76 -----------------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp -----------------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred -----------------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 233445566665 8999999999999655 56655544 6778999999998
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-eeeeeeeccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH-QLNQVDFQTK 681 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~-~~~~~~~~~~ 681 (969)
.++.+|++++.||+|++||+++++..... .+...+.+++|+|++.+|++|+.||.|++||+++++.. ...
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~------- 209 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF------- 209 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC-------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE-------
Confidence 25789999999999999999998876654 34457999999999999999999999999999988754 211
Q ss_pred ccC-CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE--EEee-cCCCCe--EEEEEeCCCCEEEEEeC-CCcEE
Q 002086 682 KKS-STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK--FRGF-RNTSSQ--ISAAFNADGKYIISASE-DSQVY 754 (969)
Q Consensus 682 ~~~-h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~--~~~~-~~~~~V--~sl~fspdg~~LaSgs~-Dg~I~ 754 (969)
.. |...|++++|+|++ .+|++++ ++.|++||+...... +..+ .+...+ .+++|+|+|++|++++. |+.|+
T Consensus 210 -~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 210 -PVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT 286 (343)
T ss_dssp -CCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred -eccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence 33 88999999999988 7888888 559999997654322 1110 011122 46999999999999998 99999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
||++.+.
T Consensus 287 v~~~~~~ 293 (343)
T 3lrv_A 287 IYKFDKK 293 (343)
T ss_dssp EEEECTT
T ss_pred EEEEccc
Confidence 9999764
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-24 Score=252.89 Aligned_cols=288 Identities=11% Similarity=0.078 Sum_probs=208.2
Q ss_pred CcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhh
Q 002086 338 SPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQ 417 (969)
Q Consensus 338 s~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~ 417 (969)
...|.+|++..++..+++++.|.++. .++.. ..++.+....+.+.|+|+...
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--------~~l~gh~~~v~~V~FsPdg~~------------------ 66 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--------KDINCNSKNLFHVKEFPLEFE------------------ 66 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC--------SCCSSBGGGTEEEEEECCCCC------------------
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc--------ceecCCCccEEEEEECCCCCc------------------
Confidence 46699999999999999999999886 22211 122233333344444444411
Q ss_pred ccccCcceEEEccCCCcccccccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 418 NKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 418 ~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
+ .+++...+....+. +|...|++++|||||++||+++.||+|+|||.+. ++.
T Consensus 67 --~--------------~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~--------- 119 (588)
T 2j04_A 67 --N--------------KLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLT--------- 119 (588)
T ss_dssp --C--------------TTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEE---------
T ss_pred --c--------------eEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eee---------
Confidence 1 11222111111222 5689999999999999999999999999999653 222
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC-----CCEEEEEecC-CcEEEE
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL-----DDVLDLSWSR-SHLLLS 570 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~-----~~I~~l~fs~-~~~L~S 570 (969)
.+. |. ..|.+++|+| +++|++
T Consensus 120 ----------------------------------------------------~l~-~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 120 ----------------------------------------------------NLD-SKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp ----------------------------------------------------ECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred ----------------------------------------------------ecc-CCCccccccEEEEEEcCCCCEEEE
Confidence 222 33 3589999999 899999
Q ss_pred EeCCCcEEEEECCCCc-------EEEEe-----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE----EEe-
Q 002086 571 SSMDKTVRLWDMETKS-------CLKLF-----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV----DWT- 633 (969)
Q Consensus 571 gs~DgtV~IWDl~t~~-------~i~~~-----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~----~~~- 633 (969)
|+.||+|+|||+.++. .+.++ +|...|.+++|+| ++ +++++.|++|++||+.++... .+.
T Consensus 147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 9999999999999885 34553 5778999999999 77 889999999999999887732 232
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE--cCCCCceEEEEeCCCcE
Q 002086 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF--SPSNPSEVLVTSADSRI 711 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f--spd~~~~l~sgs~Dg~I 711 (969)
.|...|.+++|+ |+.||+++ +++|++||+.+++..... .+|...|..++| +|++ ..+++++.||+
T Consensus 224 ~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~--------~gh~~~V~~va~~~s~d~-~~La~a~edG~- 290 (588)
T 2j04_A 224 ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK--------TGSLENFHIIPLNHEKES-TILLMSNKTSY- 290 (588)
T ss_dssp CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE--------CSCCSCCCEEEETTCSSC-EEEEECSSCEE-
T ss_pred cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE--------cCCCceEEEEEeeeCCCC-CEEEEEcCCCC-
Confidence 566889999999 68999887 699999999988763221 369999999999 9988 78999999999
Q ss_pred EEEeCCcceEE----------------------EEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 712 RILDGLDIVHK----------------------FRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 712 ~IwD~~~~~~~----------------------~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
++|........ +....+...|.+++|+|||+.+|+++.
T Consensus 291 klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 291 KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 99975311100 001111223778888888888888764
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.3e-24 Score=247.37 Aligned_cols=251 Identities=14% Similarity=0.079 Sum_probs=194.8
Q ss_pred ecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecc--cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 447 IQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQ--ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~--tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~---------------------------------- 143 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR---------------------------------- 143 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE----------------------------------
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee----------------------------------
Confidence 34677899999999999996 899999999999998 55444321
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEE----E-eecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLK----L-FAHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~----~-~~h~~~V 597 (969)
....|...|.+++|+| +.+|++|+.||.|++|++.++.... . .+|...|
T Consensus 144 -------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v 198 (450)
T 2vdu_B 144 -------------------------KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSML 198 (450)
T ss_dssp -------------------------EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCE
T ss_pred -------------------------ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCce
Confidence 1125778999999999 8899999999999999998877553 3 3799999
Q ss_pred EEEEEecCC---CCEEEEEECCCeEEEEeCCCceEEEE--ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 598 TCIQFNPMD---DDYFISGSLDAKVRIWSISDRLVVDW--TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 598 ~sv~fsp~~---~~~L~sgs~Dg~I~IWDl~~~~~~~~--~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
++++|+| + +.+|++|+.|+.|++||+.++..+.. ..|...|.+++|+ ++++|++++.|+.|++||+.+++...
T Consensus 199 ~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 199 TDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLS 276 (450)
T ss_dssp EEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEE
T ss_pred EEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEee
Confidence 9999999 7 88999999999999999998876543 3688999999999 99999999999999999999988765
Q ss_pred eeeeeec-----------------ccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeC--Ccc---eEEEEeecCC
Q 002086 673 LNQVDFQ-----------------TKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDG--LDI---VHKFRGFRNT 729 (969)
Q Consensus 673 ~~~~~~~-----------------~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~--~~~---~~~~~~~~~~ 729 (969)
....... .........|.+++|+|++ .+|++++ .++.|+||++ ... ........ .
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~ 354 (450)
T 2vdu_B 277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-P 354 (450)
T ss_dssp EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-S
T ss_pred eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEecc-C
Confidence 4432100 0001334679999999988 6777777 8999999998 322 22222222 3
Q ss_pred CCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~------Dg~I~IWdl~t 760 (969)
..+.+++|+|++.++++++. +..|.||.+..
T Consensus 355 ~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 355 YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 78999999996544444443 55689998764
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1.8e-23 Score=240.58 Aligned_cols=242 Identities=12% Similarity=0.136 Sum_probs=201.8
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.+|.+.|++++|+++++++++++.|+.|++||+.+++.+.
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~-------------------------------------- 205 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA-------------------------------------- 205 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE--------------------------------------
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE--------------------------------------
Confidence 567899999999999999999999999999999998766544
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
.+..|...+.+++|++ +.++ ++++.|+.|++||+.+++.+..+.+...+.+++|+
T Consensus 206 -----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 262 (433)
T 3bws_A 206 -----------------------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLS 262 (433)
T ss_dssp -----------------------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEEC
T ss_pred -----------------------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEc
Confidence 4456888999999999 6666 55558999999999999999888777889999999
Q ss_pred cCCCCEEEEEE--------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeee
Q 002086 604 PMDDDYFISGS--------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 604 p~~~~~L~sgs--------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~~~~~~ 674 (969)
| ++.+|++++ .|+.|++||+.+++++....+...+.+++|+|+++.+ ++++.++.|++||+.+++.....
T Consensus 263 ~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 263 K-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp T-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred C-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 9 888998888 5889999999999988887777789999999999765 56689999999999987765332
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeC---------------CCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA---------------DSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~---------------Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
.+...+.+++|+|++ .++++++. ||.|++||.......... .....+.+++|+|
T Consensus 342 ---------~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~-~~~~~~~~~~~s~ 410 (433)
T 3bws_A 342 ---------PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW-EAGNQPTGLDVSP 410 (433)
T ss_dssp ---------ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE-ECSSSEEEEEECT
T ss_pred ---------cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe-cCCCCCceEEEcC
Confidence 245678999999998 56666665 579999997665433332 2355789999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCC
Q 002086 740 DGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 740 dg~~LaSgs~-Dg~I~IWdl~t 760 (969)
+|++|++++. |+.|++|+++.
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999998875 99999999864
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=8.7e-24 Score=243.29 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=205.9
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..+..|. .+.+++|+|++.++++++.|+.|++||+.+++.+.....
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------------------------ 162 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP------------------------------ 162 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC------------------------------
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc------------------------------
Confidence 4555666554 456999999888889999999999999998876642110
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
..+.+|...|.+++|++ +.++++++.|+.|++||+.+++.+..+ .|...+.+
T Consensus 163 --------------------------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~ 216 (433)
T 3bws_A 163 --------------------------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI 216 (433)
T ss_dssp --------------------------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred --------------------------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence 13457889999999988 789999999999999999999988877 68889999
Q ss_pred EEEecCCCCEEE-EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe--------CCCcEEEEEcCCCce
Q 002086 600 IQFNPMDDDYFI-SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS--------HKGSCRLYSIEDSKL 670 (969)
Q Consensus 600 v~fsp~~~~~L~-sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs--------~dg~I~IwDl~~~~~ 670 (969)
++|+| ++.+++ +++.|+.|++||+.+++.+........+.+++|+|++++|++++ .||.|++||+.+++.
T Consensus 217 ~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~ 295 (433)
T 3bws_A 217 LLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL 295 (433)
T ss_dssp EEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE
T ss_pred EEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE
Confidence 99999 787775 55589999999999999888887778899999999999999888 488999999998876
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC-
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE- 749 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~- 749 (969)
.... .+...+.+++|+|++..++++++.++.|++||......... ..+...+.+++|+|+|++|++++.
T Consensus 296 ~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 296 IDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS-IPVFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE-EECSSSEEEEEECTTSSEEEEEECC
T ss_pred Eeec---------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE-ecCCCCCCeEEEcCCCCEEEEEecC
Confidence 4432 22346889999999866677779999999999875443332 335667899999999999998887
Q ss_pred --------------CCcEEEEEcCCC
Q 002086 750 --------------DSQVYVWKREEH 761 (969)
Q Consensus 750 --------------Dg~I~IWdl~t~ 761 (969)
||.|++||+.++
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred CCccccccccccccceEEEEEECCCC
Confidence 579999999873
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.2e-24 Score=237.58 Aligned_cols=256 Identities=8% Similarity=0.035 Sum_probs=193.1
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
|++...+.+..+. .+.|.++.|+|+ |++++.|++|++|+......+....
T Consensus 63 wd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~------------------------- 112 (343)
T 3lrv_A 63 TQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK------------------------- 112 (343)
T ss_dssp EEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT-------------------------
T ss_pred EECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC-------------------------
Confidence 3555555555565 678889999988 9999999999999987532211100
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeE-eccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCS-FIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~-l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
..+.+.. ..+|.+.|.+++|+| +++|++|+.||+|++||+.+++++..+
T Consensus 113 ---------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 113 ---------------------------TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp ---------------------------TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred ---------------------------CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 0111222 236788999999998 579999999999999999999997766
Q ss_pred --ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE--EEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 592 --AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV--DWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 592 --~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~--~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
.|...|.+++|+| ++.+|++|+.||.|++||+++++.. .+.. |...|++++|+|++.+|++++ ++.|++||++
T Consensus 166 ~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~ 243 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLR 243 (343)
T ss_dssp CCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETT
T ss_pred ecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcC
Confidence 4566899999999 9999999999999999999998755 5555 789999999999999999999 5599999999
Q ss_pred CCceeeeeeeeecccccCCCCCe--EEEEEcCCCCceEEEEeC-CCcEEEEeCCcceEEEEeecCCCCeEEEEEeC---C
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKI--TGFQFSPSNPSEVLVTSA-DSRIRILDGLDIVHKFRGFRNTSSQISAAFNA---D 740 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~I--t~l~fspd~~~~l~sgs~-Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp---d 740 (969)
..+....... ...+...+ .+++|+|++ .+|++++. |+.|++|+..+....+.. ..+..+.|.+ +
T Consensus 244 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 244 KDVGTLAYPT-----YTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp SSTTCBSSCC-----CBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred CCCcceeecc-----cccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 8765332110 01122223 579999998 78888888 999999996443322222 4567788888 8
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 002086 741 GKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t 760 (969)
+..|++++.||.+.++-...
T Consensus 314 ~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCEEEEEEETTEEEEEEECS
T ss_pred cceeEEEecCCceEEEEecC
Confidence 89999999999999886543
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=2.7e-23 Score=234.82 Aligned_cols=247 Identities=11% Similarity=0.157 Sum_probs=186.5
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++..++..... +...|..+++.++++++ ++++.|++|+|||+.+++.+..
T Consensus 46 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------------------------- 96 (355)
T 3vu4_A 46 NVHPVAHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------------------------- 96 (355)
T ss_dssp EETTEEEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE---------------------------
T ss_pred ecCCcceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE---------------------------
Confidence 44444444333 23358889999988877 5677889999999998876552
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCC-cEEEEeecC
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETK-SCLKLFAHN 594 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~-~~i~~~~h~ 594 (969)
+. |...|.++.|+++..++ + .|+.|++||+.++ +.+..+..
T Consensus 97 ----------------------------------~~-~~~~v~~v~~~~~~~~~-~-~~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 97 ----------------------------------IK-VDAPVKDLFLSREFIVV-S-YGDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp ----------------------------------EE-CSSCEEEEEECSSEEEE-E-ETTEEEEEESSTTCCBSSCCEE-
T ss_pred ----------------------------------EE-CCCceEEEEEcCCEEEE-E-EcCEEEEEECCCCceeeEEecc-
Confidence 22 55689999999754433 3 4789999999988 66555544
Q ss_pred CCeEEEEEecCCCCEEEE--EECCCeEEEEeCCCce-----------------EEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 595 DYVTCIQFNPMDDDYFIS--GSLDAKVRIWSISDRL-----------------VVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~s--gs~Dg~I~IWDl~~~~-----------------~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
....+++++ .++++ |+.||.|++||+.++. +..+..|...|++++|+|+|++|++|+
T Consensus 139 -~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 139 -FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp -EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 455566765 55655 5899999999999865 567788999999999999999999999
Q ss_pred CCCc-EEEEEcCCCceeeeeeeeecccccC-CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce----EE-------
Q 002086 656 HKGS-CRLYSIEDSKLHQLNQVDFQTKKKS-STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV----HK------- 722 (969)
Q Consensus 656 ~dg~-I~IwDl~~~~~~~~~~~~~~~~~~~-h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~----~~------- 722 (969)
.|++ |+|||+.+++...... .+ |...|.+++|+|++ .+|++++.|++|++||+.... ..
T Consensus 215 ~d~~~v~iwd~~~~~~~~~~~-------~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 215 QDGTIIRVFKTEDGVLVREFR-------RGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp TTCSEEEEEETTTCCEEEEEE-------CTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred CCCCEEEEEECCCCcEEEEEE-------cCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 9998 9999999887654321 23 88999999999988 799999999999999965321 00
Q ss_pred -----------EEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 723 -----------FRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 723 -----------~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+... ........++|++||++|++++.||.+++|++...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0000 011223568999999999999999999999997643
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=1.3e-22 Score=224.56 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=194.1
Q ss_pred cccceeeeEecccccC----EEEEEEeCCCC---EEEEEeCCCcEEEEecccc---eEEEeecCCccCcccccccCCCC-
Q 002086 438 LSALHLCQEIQAHEGS----IWTIKFSLDAR---FLASAGEDRVIHVWEVQEC---EVMSMSEGNLTPIHPSLCNSSDK- 506 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~----I~~l~fSpDg~---~LaTgs~DgtVrIWDl~tg---~~l~~~~~~~~~v~~~~~~~~~~- 506 (969)
...++++.+|+.-.+. +.++-|-..|- .++++++ .+|++|+..++ +.+.+..++..++..+.+.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 100 (356)
T 2w18_A 22 PGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN 100 (356)
T ss_dssp --CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS
T ss_pred cceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc
Confidence 3456677777766553 45555544333 6788885 57999999999 88888888887776666554321
Q ss_pred -CccCCCCCCCCCcccccCCCCCCCCcccccceeeecC---CCceeEeccCCCCEEEEEecCCcEEEEEe--CCCcEEEE
Q 002086 507 -ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS---EKPFCSFIGHLDDVLDLSWSRSHLLLSSS--MDKTVRLW 580 (969)
Q Consensus 507 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs--~DgtV~IW 580 (969)
.....|..... ......+... ......-.+|...|..+ ..++++.+++ .|+.|++|
T Consensus 101 ~~~~~~~~~~~~----------------~v~sla~spd~~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~ 162 (356)
T 2w18_A 101 LVCVALGNLEIR----------------EIRALFCSSDDESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVM 162 (356)
T ss_dssp CEEEEECSSSEE----------------EEEEECC------CCEEEEEEEEEEEEEEE--TTTEEEEEESSSTTCEEEEE
T ss_pred eeeeeecccccc----------------ceEEEEECCCccccccEEEeCCCeEEEEec--CCCcEEEecccCCCCcEEEE
Confidence 11111211110 0000111111 01222224555555554 2244444433 59999999
Q ss_pred ECC-CCcEEEEe-ecCCCeEEEEEecC--CCCEEEEEECCCeEEEEeCCCceEEEEec-CC---CCEEEEEEccCCCEE-
Q 002086 581 DME-TKSCLKLF-AHNDYVTCIQFNPM--DDDYFISGSLDAKVRIWSISDRLVVDWTD-LH---EMVTAACYTPDGQNA- 651 (969)
Q Consensus 581 Dl~-t~~~i~~~-~h~~~V~sv~fsp~--~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~---~~V~sv~fspdg~~L- 651 (969)
++. .++.+..+ .|...++.++|++. ++.+|++++.|++|+|||+.+++.+..+. +. ..+.+++|+|+|.++
T Consensus 163 ~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv 242 (356)
T 2w18_A 163 TFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI 242 (356)
T ss_dssp EECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred EECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence 994 47776654 88888888888874 56899999999999999999998776553 33 357888999999876
Q ss_pred -----------EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 652 -----------LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 652 -----------asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
++|+.|++|++||..+++......+.+ ..+|...+.+..++ + .++++++.|++|+|||.....
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~---p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL---PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp EEC------------CCEEEEEEETTTTEEEEEEEECC---CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec---cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc
Confidence 567889999999999998765433222 13455555555554 3 689999999999999987765
Q ss_pred EEEEeecCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 721 HKFRGFRNTSSQI-SAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 721 ~~~~~~~~~~~V~-sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.......|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5444444444444 5899999999999999999999996
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=3e-22 Score=227.19 Aligned_cols=275 Identities=11% Similarity=0.108 Sum_probs=210.1
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS 543 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 543 (969)
.++++++.|+.|++||+.+++.+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~-------------------------------------------------------- 26 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA-------------------------------------------------------- 26 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE--------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE--------------------------------------------------------
Confidence 468899999999999999887655
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCCeEE
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDAKVR 620 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg~I~ 620 (969)
.+.+| ..+.+++|+| +.+| ++++.|++|++||+.+++++..+.+...+.+++|+| ++.+|+ +++.++.|+
T Consensus 27 -----~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 27 -----TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLS 99 (391)
T ss_dssp -----EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred -----EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEE
Confidence 23334 3489999999 6655 677799999999999999999987777999999999 888775 455679999
Q ss_pred EEeCCCceEEEEecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+||+.+++.+....+...+.+++|+|++++| ++++.++.|++||+.+++...... ....+.+++|+|++.
T Consensus 100 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~dg~ 170 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VGRSPKGIAVTPDGT 170 (391)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CCSSEEEEEECTTSS
T ss_pred EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cCCCcceEEECCCCC
Confidence 9999999988888888889999999999987 677889999999999887654321 234579999999985
Q ss_pred ceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCCccCCCceeEEeccc
Q 002086 700 SEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS---EDSQVYVWKREEHRNASTGKRAIITTRN 776 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs---~Dg~I~IWdl~t~~~~~t~k~~~~~~~~ 776 (969)
.++++++.++.|++||......... ..+...+.+++|+|+|++|++++ .++.|++||+.++ +.+.....
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------~~~~~~~~- 242 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSVIDT-VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------KITARIPV- 242 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------EEEEEEEC-
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEE-EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC------eEEEEEec-
Confidence 4557778899999999876544332 33456788999999999999988 6899999999873 22211111
Q ss_pred CCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCc-cccCCCCccccCCCCCCccccCCCCC
Q 002086 777 HEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGS-PAGHSRRLLPPLPKKTNKVERVPSPP 855 (969)
Q Consensus 777 ~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i-~~~~~~~~L~~~~~~s~~~~~~l~~p 855 (969)
+. .+....++|++.++ ++...+..+..|...++.+...+..+
T Consensus 243 ~~-------------------------------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 243 GP-------------------------------------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp CS-------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CC-------------------------------------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 10 01223456777666 45566778888877776665554433
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.8e-23 Score=258.39 Aligned_cols=253 Identities=15% Similarity=0.188 Sum_probs=196.9
Q ss_pred eEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC--CCcEEEEe-ecCCCeEEEEEecCC--CCEEEEEECCCeEEE
Q 002086 548 CSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME--TKSCLKLF-AHNDYVTCIQFNPMD--DDYFISGSLDAKVRI 621 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~--t~~~i~~~-~h~~~V~sv~fsp~~--~~~L~sgs~Dg~I~I 621 (969)
..+.+|.+.|++++|+| +++|++|+.||+|+|||+. +++++..+ +|...|++++|+| + +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence 36789999999999999 8899999999999999998 44555555 7999999999998 5 899999999999999
Q ss_pred EeCCCce---EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 622 WSISDRL---VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 622 WDl~~~~---~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
||+.++. ......|...|.+++|+|+ +.++++|+.||.|++||+.......... ...|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------IDAHAIGVNSASWAP 155 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------EECCSSCEEEEEECC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------eecCCCceEEEEecC
Confidence 9999884 4456668899999999999 9999999999999999998875432221 256888999999999
Q ss_pred C------------CCceEEEEeCCCcEEEEeCCcc----eEEEEeecCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEE
Q 002086 697 S------------NPSEVLVTSADSRIRILDGLDI----VHKFRGFRNTSSQISAAFNAD---GKYIISASEDSQVYVWK 757 (969)
Q Consensus 697 d------------~~~~l~sgs~Dg~I~IwD~~~~----~~~~~~~~~~~~V~sl~fspd---g~~LaSgs~Dg~I~IWd 757 (969)
. ++..+++++.||.|++||.... ........|...|.+++|+|+ +.+|++|+.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5 2479999999999999996543 233344567788999999999 99999999999999999
Q ss_pred cCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCc
Q 002086 758 REEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRL 837 (969)
Q Consensus 758 l~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~ 837 (969)
+.+++...... ... ...........+++|++.++++++.++.
T Consensus 236 ~~~~~~~~~~~----~~~----------------------------------~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 236 QDNEQGPWKKT----LLK----------------------------------EEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp ESSSSSCCBCC----BSS----------------------------------SSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred CCCCCCcceeE----Eec----------------------------------cCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 98743211000 000 0001111234567888888888888888
Q ss_pred cccCCCCC
Q 002086 838 LPPLPKKT 845 (969)
Q Consensus 838 L~~~~~~s 845 (969)
+..|....
T Consensus 278 I~vwd~~~ 285 (753)
T 3jro_A 278 VTLWKENL 285 (753)
T ss_dssp EECCBCCS
T ss_pred EEEEecCC
Confidence 88887653
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.90 E-value=1.8e-22 Score=233.83 Aligned_cols=208 Identities=13% Similarity=0.180 Sum_probs=170.1
Q ss_pred eEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCC----------CcEEEEe-ecCCCeEEEEEecCCCC-EEEEE
Q 002086 548 CSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMET----------KSCLKLF-AHNDYVTCIQFNPMDDD-YFISG 613 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t----------~~~i~~~-~h~~~V~sv~fsp~~~~-~L~sg 613 (969)
....+|.+.|++++|+| +.+|++++.||.|++||+.+ ...+..+ +|...|.+++|+| ++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence 35678999999999999 46899999999999999986 4444444 8999999999999 666 99999
Q ss_pred ECCCeEEEEeCCCce--------EEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 614 SLDAKVRIWSISDRL--------VVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 614 s~Dg~I~IWDl~~~~--------~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
+.||.|++||+..+. ...+..|...|.+++|+| ++.+|++++.||.|++||++....... ......
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~-----~~~~~~ 275 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP-----SHTVDA 275 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC-----SEEEEC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc-----eeEeec
Confidence 999999999998731 234557888999999999 678999999999999999997631110 111146
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGK-YIISASEDSQVYVWKREEH 761 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~-~LaSgs~Dg~I~IWdl~t~ 761 (969)
|...|.+++|+|++..+|++++.|+.|++||.... ........|...|.+++|+|+++ +|++++.||.|+|||+...
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 88899999999998668999999999999997752 22223334677899999999985 7999999999999999863
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=1.7e-21 Score=215.70 Aligned_cols=285 Identities=13% Similarity=0.060 Sum_probs=185.5
Q ss_pred CcEEEEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccc
Q 002086 289 GAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSK 368 (969)
Q Consensus 289 ~~~~~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~ 368 (969)
|-+..-|-..+++|..+..-.+ ..++||+..++.+ -+.+.+..+|.-.|.++.+..+. .+.+++-++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~--~~v~lw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~ 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE--DVVSLWKALDAWQ--WEKLYTWHFAEVPVLQIVPVPDV--------YNLVCVALGN 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES--SEEEEEEESSSSB--EEEEEEEECCSSCEEEECCCTTC--------CSCEEEEECS
T ss_pred EEeeeeeccCCCCccEEEEecc--ceEEEcccCCCcc--ceeeEEEeccCceeEEEEEcCcc--------cceeeeeecc
Confidence 3345557778888876655555 4579999999943 13467788999889888843222 1222222111
Q ss_pred cccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEec
Q 002086 369 SLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ 448 (969)
Q Consensus 369 ~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~ 448 (969)
. +. ..+.+++|+++..+ ...++. -.
T Consensus 109 ~----------~~----~~v~sla~spd~~~----------------------~~~~l~-------------------s~ 133 (356)
T 2w18_A 109 L----------EI----REIRALFCSSDDES----------------------EKQVLL-------------------KS 133 (356)
T ss_dssp S----------SE----EEEEEECC----------------------------CCEEEE-------------------EE
T ss_pred c----------cc----cceEEEEECCCccc----------------------cccEEE-------------------eC
Confidence 0 11 22333433434222 011111 12
Q ss_pred ccccCEEEEEEeCCCCEEEEEe--CCCcEEEEecc-cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAG--EDRVIHVWEVQ-ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs--~DgtVrIWDl~-tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
+|...|+++ ++|+++.+++ .|++|++|++. +|+.+.
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------------------------------------- 172 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------------------------------------- 172 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE--------------------------------------
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee--------------------------------------
Confidence 345555554 5666666644 58888888874 344332
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC----CcEEEEEeCCCcEEEEECCCCcEEEEee-c---CCCe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR----SHLLLSSSMDKTVRLWDMETKSCLKLFA-H---NDYV 597 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~----~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h---~~~V 597 (969)
.+.+|...+..++|++ +.+|++|+.|++|+|||+.++++++++. | ...+
T Consensus 173 -----------------------s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v 229 (356)
T 2w18_A 173 -----------------------NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASV 229 (356)
T ss_dssp -----------------------EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCC
T ss_pred -----------------------eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeee
Confidence 4557888787888876 4899999999999999999999999883 3 3468
Q ss_pred EEEEEecCCCCEE------------EEEECCCeEEEEeCCCceEEEEe------cCCCCEEEEEEccCCCEEEEEeCCCc
Q 002086 598 TCIQFNPMDDDYF------------ISGSLDAKVRIWSISDRLVVDWT------DLHEMVTAACYTPDGQNALIGSHKGS 659 (969)
Q Consensus 598 ~sv~fsp~~~~~L------------~sgs~Dg~I~IWDl~~~~~~~~~------~~~~~V~sv~fspdg~~Lasgs~dg~ 659 (969)
.+++|+| ++.++ ++|+.|++|++||..+++.+... +|...+.+..++ +.++++|+.|++
T Consensus 230 ~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT 306 (356)
T 2w18_A 230 CHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGT 306 (356)
T ss_dssp EEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSC
T ss_pred EEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCc
Confidence 8889999 88776 56889999999999999876543 334444444443 789999999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeE-EEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT-GFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It-~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
|+|||+.+++..... .+|...+. .++|+|++ .+|++|+.|++|+|||.
T Consensus 307 IkIWDl~tGk~l~tL--------~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALL--------PPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEE--------CCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEe--------cCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 999999999876543 45655544 68999998 89999999999999983
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=4.4e-23 Score=236.39 Aligned_cols=210 Identities=15% Similarity=0.157 Sum_probs=145.4
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe------ecCCCeEEEEEec-------CCCCEEEEEECC
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF------AHNDYVTCIQFNP-------MDDDYFISGSLD 616 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~------~h~~~V~sv~fsp-------~~~~~L~sgs~D 616 (969)
..|...+....+.+ +.+|++|+.|++|+|||+.++++.... +|.+.|++|+|+| .++++|++|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 34555555555555 678999999999999999998765432 7999999999987 257899999999
Q ss_pred CeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeee-----------------
Q 002086 617 AKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVD----------------- 677 (969)
Q Consensus 617 g~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~----------------- 677 (969)
++|+|||+.++ .+.....+...|.+++|+|++. +|++|+.||+|++||+++++........
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 99999999765 5667788999999999999875 7999999999999999887643211100
Q ss_pred ecccccCCCCCeEEEEEc-CCCCceEEEEeCCCcEEEEeCCcceEEEE------------------eecCCCCeEEEEEe
Q 002086 678 FQTKKKSSTRKITGFQFS-PSNPSEVLVTSADSRIRILDGLDIVHKFR------------------GFRNTSSQISAAFN 738 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fs-pd~~~~l~sgs~Dg~I~IwD~~~~~~~~~------------------~~~~~~~V~sl~fs 738 (969)
......+|...+.++.|+ |++ ..+++++.|+++++||+........ ..........+.|+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 011124677889999987 555 8999999999999999653221111 11111222233454
Q ss_pred C--CCCEEEEEeCCCcEEEEEcCCC
Q 002086 739 A--DGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 739 p--dg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
| ++.++++|+.||.|+|||+.++
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCT
T ss_pred cCCCCEEEEEECCCCEEEEEECCCC
Confidence 4 4557788889999999999874
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=5.6e-21 Score=220.80 Aligned_cols=251 Identities=11% Similarity=0.077 Sum_probs=197.6
Q ss_pred cccc--ccceee--eEecccccCEEEEEEeC--------------CCCEEEEEeCC------CcEEEEecccceEEEeec
Q 002086 435 YKDL--SALHLC--QEIQAHEGSIWTIKFSL--------------DARFLASAGED------RVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 435 l~dl--~~~~l~--~~L~gH~~~I~~l~fSp--------------Dg~~LaTgs~D------gtVrIWDl~tg~~l~~~~ 490 (969)
+||+ .+.+++ ..+.+|...|..+++++ .+..|+.++.+ +.|++||+..+.
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------ 170 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------ 170 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC------
Confidence 4566 555555 56899999999888875 15666666654 799999986322
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL 569 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~ 569 (969)
...+.+|...|.+++|+| +++|+
T Consensus 171 --------------------------------------------------------~~~l~~~~~~v~~~~~Spdg~~la 194 (415)
T 2hqs_A 171 --------------------------------------------------------QFVVHRSPQPLMSPAWSPDGSKLA 194 (415)
T ss_dssp --------------------------------------------------------CEEEEEESSCEEEEEECTTSSEEE
T ss_pred --------------------------------------------------------CEEEeCCCCcceeeEEcCCCCEEE
Confidence 125667889999999999 88999
Q ss_pred EEeCCC---cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCCe--EEEEeCCCceEEEEecCCCCEEEEE
Q 002086 570 SSSMDK---TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDAK--VRIWSISDRLVVDWTDLHEMVTAAC 643 (969)
Q Consensus 570 Sgs~Dg---tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg~--I~IWDl~~~~~~~~~~~~~~V~sv~ 643 (969)
+++.++ .|++||+.++++.....|...+.+++|+| ++.+|+ +++.++. |++||+.+++...+..+...+.+++
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 273 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEE
T ss_pred EEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceE
Confidence 999885 99999999999988778999999999999 888777 6666655 9999999998888888888999999
Q ss_pred EccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC---CcEEEEeCC
Q 002086 644 YTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD---SRIRILDGL 717 (969)
Q Consensus 644 fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D---g~I~IwD~~ 717 (969)
|+|+|++|++++. ++ .|++||+.+++.... ..+...+..++|+|++ .+|++++.+ ..|++||..
T Consensus 274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l---------~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---------TWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---------CCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETT
T ss_pred ECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE---------ecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECC
Confidence 9999999998886 44 678889887764221 2345678899999998 566666553 589999976
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDS---QVYVWKREE 760 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg---~I~IWdl~t 760 (969)
..... ....+ ..+.+++|+|||++|++++.|+ .|++||+..
T Consensus 344 ~~~~~-~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 344 TGGVQ-VLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp TCCEE-ECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred CCCEE-EecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 54432 22223 3789999999999999998887 799999875
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=2e-21 Score=224.58 Aligned_cols=247 Identities=12% Similarity=0.143 Sum_probs=184.0
Q ss_pred CcEEEEEeCC------CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC---eEEEEeCCCceEEEEecC
Q 002086 565 SHLLLSSSMD------KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA---KVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 565 ~~~L~Sgs~D------gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg---~I~IWDl~~~~~~~~~~~ 635 (969)
+..++.++.+ ++|++||+..+.......|...|.+++|+| ++++|++++.++ .|++||+.+++...+..+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~ 221 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF 221 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecC
Confidence 4566666554 799999998777666668999999999999 999999999885 999999999998888888
Q ss_pred CCCEEEEEEccCCCEEE-EEeCCCc--EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC-CC--
Q 002086 636 HEMVTAACYTPDGQNAL-IGSHKGS--CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA-DS-- 709 (969)
Q Consensus 636 ~~~V~sv~fspdg~~La-sgs~dg~--I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~-Dg-- 709 (969)
...+.+++|+|+|++|+ +++.++. |++||+.+++.... ..+...+.+++|+|++ ..|++++. ++
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l---------~~~~~~~~~~~~spdg-~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV---------TDGRSNNTEPTWFPDS-QNLAFTSDQAGRP 291 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC---------CCCSSCEEEEEECTTS-SEEEEEECTTSSC
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC---------cCCCCcccceEECCCC-CEEEEEECCCCCc
Confidence 88999999999999888 5666654 99999988765322 4566789999999998 66666665 45
Q ss_pred cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCCccCCCceeEEecccCCceeeeeeE
Q 002086 710 RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED---SQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVS 786 (969)
Q Consensus 710 ~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D---g~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s 786 (969)
.|++||....... ....+...+.+++|+|||++|++++.+ ..|++||+.+++ .. ..... .
T Consensus 292 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~~-~l~~~-~-------- 354 (415)
T 2hqs_A 292 QVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQ-VLSST-F-------- 354 (415)
T ss_dssp EEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------EE-ECCCS-S--------
T ss_pred EEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------EE-EecCC-C--------
Confidence 6778886654322 222344568899999999999988865 589999998732 11 11100 0
Q ss_pred EeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCC---ccccCCCCCCccccCCCCCCCCccccc
Q 002086 787 VAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRR---LLPPLPKKTNKVERVPSPPEEELSLIS 863 (969)
Q Consensus 787 ~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~---~L~~~~~~s~~~~~~l~~pee~l~~is 863 (969)
....+.++|++.+++..+.+. .++.|+..+. ..+.++.+...+.+++
T Consensus 355 -----------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~~~~v~~~~ 404 (415)
T 2hqs_A 355 -----------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVKFPA 404 (415)
T ss_dssp -----------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCSSSEEEEEE
T ss_pred -----------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCCCCCCcCCc
Confidence 112345678887776666555 6888877644 4456678888899999
Q ss_pred cCCCCC
Q 002086 864 HDPGIS 869 (969)
Q Consensus 864 ~hP~~~ 869 (969)
|+|...
T Consensus 405 ~~~~~~ 410 (415)
T 2hqs_A 405 WSPYLH 410 (415)
T ss_dssp ECCCCC
T ss_pred cccccc
Confidence 988754
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=6.6e-19 Score=194.61 Aligned_cols=250 Identities=14% Similarity=0.179 Sum_probs=177.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCC-CcEEEEecc--cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGED-RVIHVWEVQ--ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~D-gtVrIWDl~--tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.|...+.+++|+|+|++|++++.+ +.|++|++. +++...
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-------------------------------------- 76 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-------------------------------------- 76 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--------------------------------------
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--------------------------------------
Confidence 478889999999999999998886 999999987 443221
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECC---CCcEEEEeecCCCeEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDME---TKSCLKLFAHNDYVTCI 600 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~---t~~~i~~~~h~~~V~sv 600 (969)
+..+..+. .+..++|+| +++|++++ .++.|.+||+. ..+.+..+.....+.++
T Consensus 77 ---------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 134 (343)
T 1ri6_A 77 ---------------------AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSA 134 (343)
T ss_dssp ---------------------EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCC
T ss_pred ---------------------ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEE
Confidence 01222222 677899999 67676665 48899999994 44455556666679999
Q ss_pred EEecCCCCEEEEEE-CCCeEEEEeCCC-ceEEE-----Ee-cCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC--Cc
Q 002086 601 QFNPMDDDYFISGS-LDAKVRIWSISD-RLVVD-----WT-DLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIED--SK 669 (969)
Q Consensus 601 ~fsp~~~~~L~sgs-~Dg~I~IWDl~~-~~~~~-----~~-~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~--~~ 669 (969)
+|+| ++++|++++ .++.|++||+.+ +++.. .. .....+..++|+|+++++++++ .++.|.+|++.. ++
T Consensus 135 ~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 135 NISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp EECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 9999 888888777 899999999987 65432 22 2345788999999999776655 789999999954 43
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
...................+..++|+|++..+++++..++.|++||... .............+..++|+|+|++|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 293 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEE
Confidence 3222111111111122456778999999844444566899999999762 2222222222334788999999999888
Q ss_pred Ee-CCCcEEEEEcC
Q 002086 747 AS-EDSQVYVWKRE 759 (969)
Q Consensus 747 gs-~Dg~I~IWdl~ 759 (969)
++ .++.|.+|+++
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 58999999765
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=1.4e-18 Score=207.87 Aligned_cols=260 Identities=12% Similarity=0.107 Sum_probs=195.3
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEec--ccceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEV--QECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl--~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
++|..+++++.++..+.. +.+++|+|||++|++++.|++|++||+ .+++++..
T Consensus 163 v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~------------------------ 217 (543)
T 1nir_A 163 LVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE------------------------ 217 (543)
T ss_dssp EEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE------------------------
T ss_pred EEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE------------------------
Confidence 446777788888884433 999999999999999999999999999 66665442
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-----CcEEEEEe-CCCcEEEEECCCCc
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-----SHLLLSSS-MDKTVRLWDMETKS 586 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-----~~~L~Sgs-~DgtV~IWDl~t~~ 586 (969)
+. +...+..++|+| +++|++++ .+++|.|||..+++
T Consensus 218 -------------------------------------i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 218 -------------------------------------IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp -------------------------------------EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred -------------------------------------Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 22 334578899997 57888887 48999999999999
Q ss_pred EEEEee-----------cC-CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE--EecCCCCEEEEEEccCCCEEE
Q 002086 587 CLKLFA-----------HN-DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD--WTDLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 587 ~i~~~~-----------h~-~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~--~~~~~~~V~sv~fspdg~~La 652 (969)
++..+. |. ..+.++.++|....++++...++.|.+||+.+.+.+. ...+...+..++|+|+|++|+
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 988773 22 3789999999444566777889999999998754332 445566788999999999877
Q ss_pred EEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCc-------ceEEE
Q 002086 653 IGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLD-------IVHKF 723 (969)
Q Consensus 653 sgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~-------~~~~~ 723 (969)
+++ .+++|.+||+.++++...... ....|......+ ++|++...++++. .|++|.+||... ....-
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~----g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~ 414 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDV----GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 414 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEEC----SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEecCCCeEEEEECCCCeEEEeecc----CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence 655 589999999999987654321 113354444443 5777546666665 689999999754 33333
Q ss_pred EeecCCCCeEEEEEeCCCCEEEEEe-------CCCcEEEEEcCCCC
Q 002086 724 RGFRNTSSQISAAFNADGKYIISAS-------EDSQVYVWKREEHR 762 (969)
Q Consensus 724 ~~~~~~~~V~sl~fspdg~~LaSgs-------~Dg~I~IWdl~t~~ 762 (969)
....+...+..+.|+|||++|++++ .+++|.|||+.+.+
T Consensus 415 ~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 415 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 3333445567899999999999987 27799999999854
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=4.4e-18 Score=219.15 Aligned_cols=283 Identities=12% Similarity=0.033 Sum_probs=202.7
Q ss_pred cccCEEEEEEe-CCCCEEEEEeCCCcEEEEecccceEEEeecCCcc-CcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 450 HEGSIWTIKFS-LDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT-PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 450 H~~~I~~l~fS-pDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~-~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
|.+.|.+++|+ |||++|++++ ++.|.+|++.+++.... ..+.. .+....+. .........
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s--------------- 355 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGT--------------- 355 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEE---------------
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEE---------------
Confidence 66789999999 9999999988 88999999988775542 22111 12111121 100000000
Q ss_pred CCCCcccccce-eeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 528 SSPDYVHVPET-VFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 528 ~~~~~~~~~~~-v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
. ..... ++.........+.+|...+..++|+| +++|++++.++.|++||+.+++..... .|...+.+++|+|
T Consensus 356 -~----~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 356 -R----EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp -T----TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred -C----CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence 0 00111 33444444555668889999999999 899999999999999999999988887 8899999999999
Q ss_pred CCCCEEEEEECCC----------eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-
Q 002086 605 MDDDYFISGSLDA----------KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL- 673 (969)
Q Consensus 605 ~~~~~L~sgs~Dg----------~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~- 673 (969)
++.+|++++.++ .|++||+.+++...+..+...+..++|+|+|++|++++.++...+|+.........
T Consensus 431 -DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~ 509 (1045)
T 1k32_A 431 -NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 509 (1045)
T ss_dssp -TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCS
T ss_pred -CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccccccc
Confidence 999998887654 89999999998777778888899999999999999999988888887654332100
Q ss_pred ----ee------------------------eeec------ccccCCCCCeEEEEEcCCCCceEEE-------------Ee
Q 002086 674 ----NQ------------------------VDFQ------TKKKSSTRKITGFQFSPSNPSEVLV-------------TS 706 (969)
Q Consensus 674 ----~~------------------------~~~~------~~~~~h~~~It~l~fspd~~~~l~s-------------gs 706 (969)
.. +.+. .....+...+..+.++|++ ..+++ ..
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g~~~~~~~~~~ 588 (1045)
T 1k32_A 510 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHGEFAAYYQGAP 588 (1045)
T ss_dssp CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCCSHHHHHHCCC
T ss_pred CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccCcccccccccC
Confidence 00 0000 0112355778999999988 55554 12
Q ss_pred CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 707 ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
....|++||.......... ..+..++|+|||++|++++.| .|++||+.+++
T Consensus 589 ~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 589 EKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 3457888887654432222 457789999999999999866 89999998865
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=3.1e-18 Score=220.58 Aligned_cols=281 Identities=14% Similarity=0.062 Sum_probs=202.8
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
...+.+|.+.|.++.|+++ .++++++.|++++||.+.. +.....+..+.. .....+.+.........
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~~---------- 263 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSK---------- 263 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEE----------
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEEe----------
Confidence 3456899999999999998 7778888899999998753 322222222111 11111111111110000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEec-----------cCCCCEEEEEec-C-CcEEEEEeCCCcEEEEECCCCcEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFI-----------GHLDDVLDLSWS-R-SHLLLSSSMDKTVRLWDMETKSCLK 589 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~-----------gH~~~I~~l~fs-~-~~~L~Sgs~DgtV~IWDl~t~~~i~ 589 (969)
.....++......+..+. .|...+.+++|+ | ++.|++++ ++.|.+|++..++...
T Consensus 264 -----------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 264 -----------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp -----------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE
T ss_pred -----------CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE
Confidence 000011111112222222 255678999999 9 77788877 8899999999988777
Q ss_pred EeecCC-CeEEEEEecCCCCEEEEEECCCeEE-EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 590 LFAHND-YVTCIQFNPMDDDYFISGSLDAKVR-IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 590 ~~~h~~-~V~sv~fsp~~~~~L~sgs~Dg~I~-IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
...|.. .+..++|+ ++..|+.++.++.|. +||+.+++...+..+...+..++|+|+|++|++++.++.|++||+.+
T Consensus 332 ~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 667777 89999998 788899988888899 99999888777776668899999999999999999999999999998
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC----------CcEEEEeCCcceEEEEeecCCCCeEEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD----------SRIRILDGLDIVHKFRGFRNTSSQISAAF 737 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D----------g~I~IwD~~~~~~~~~~~~~~~~V~sl~f 737 (969)
++..... ..|...+..++|+|++ .+|++++.+ +.|++||..... ......+...+..++|
T Consensus 410 g~~~~~~--------~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~ 479 (1045)
T 1k32_A 410 GKPTVIE--------RSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAF 479 (1045)
T ss_dssp CCEEEEE--------ECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEE
T ss_pred CceEEec--------cCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceE
Confidence 8764432 3567788999999998 667766654 489999987654 3344455667888999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCC
Q 002086 738 NADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+|||++|+.++.++...+|+...
T Consensus 480 spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 480 DADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CTTSCEEEEEESCCCCCEECSSS
T ss_pred cCCCCEEEEEecccCCcCcchhc
Confidence 99999999999999888888654
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.82 E-value=1.6e-18 Score=207.24 Aligned_cols=262 Identities=13% Similarity=0.115 Sum_probs=192.3
Q ss_pred ccceeeeEecccccCEEEEEEeC----CCCEEEEEeC-CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSL----DARFLASAGE-DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSp----Dg~~LaTgs~-DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
.+++++.++.. ...+..++|+| ||++|++++. +++|.|||..+++++..+.......
T Consensus 210 ~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~----------------- 271 (543)
T 1nir_A 210 KEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV----------------- 271 (543)
T ss_dssp SSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-----------------
T ss_pred CCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc-----------------
Confidence 56777888874 45679999999 9999999885 8999999999988877543210000
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC-CCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEE-
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL-DDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLK- 589 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~-~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~- 589 (969)
. ....|. ..+.++.+++ ..++++...+++|.+||+.+.+.+.
T Consensus 272 -----------------------------~-----~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~ 317 (543)
T 1nir_A 272 -----------------------------D-----TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV 317 (543)
T ss_dssp -----------------------------S-----SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE
T ss_pred -----------------------------C-----ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee
Confidence 0 000132 3788999998 4567778889999999998876544
Q ss_pred -EeecCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCceEEEEec-----CCCCEEEEEEccC-CCEEEEEe-CCCcE
Q 002086 590 -LFAHNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRLVVDWTD-----LHEMVTAACYTPD-GQNALIGS-HKGSC 660 (969)
Q Consensus 590 -~~~h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~~-----~~~~V~sv~fspd-g~~Lasgs-~dg~I 660 (969)
.+.+...+.+++|+| ++++|++++ .+++|.+||+.+++++.... |......+ ++|+ +..++++. .+++|
T Consensus 318 ~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 318 TSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred EEeccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceE
Confidence 557778899999999 888776654 58999999999998876554 33333333 5777 55566665 58999
Q ss_pred EEEEcCC-------CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-------CCCcEEEEeCCcceEEEEe-
Q 002086 661 RLYSIED-------SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-------ADSRIRILDGLDIVHKFRG- 725 (969)
Q Consensus 661 ~IwDl~~-------~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-------~Dg~I~IwD~~~~~~~~~~- 725 (969)
.+||+.+ .+.+.. ...+...+..++|+|++ .+|++++ .+++|.+||..+....+..
T Consensus 396 ~v~d~~~~~~~~~~~~~v~~--------l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~ 466 (543)
T 1nir_A 396 SLIGTDPKNHPQYAWKKVAE--------LQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 466 (543)
T ss_dssp EEEECCTTTCTTTBTSEEEE--------EECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred EEEEeCCCCCchhcCeEEEE--------EEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCCCCeEEe
Confidence 9999988 444332 24566778889999998 6777776 2779999997754433222
Q ss_pred --------ecCCCCeEEEEEeCCCCEEEEEe-----CCCcEEEEEcCCCCc
Q 002086 726 --------FRNTSSQISAAFNADGKYIISAS-----EDSQVYVWKREEHRN 763 (969)
Q Consensus 726 --------~~~~~~V~sl~fspdg~~LaSgs-----~Dg~I~IWdl~t~~~ 763 (969)
..+...+..+.|+|+|++|+.+. .|+.|.|||..+.++
T Consensus 467 ~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 467 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp CHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred echhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 23456788999999999998763 479999999998543
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.81 E-value=4.2e-18 Score=188.34 Aligned_cols=254 Identities=10% Similarity=0.102 Sum_probs=182.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeC-CCcEEEEecccceE-EEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEV-MSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~-DgtVrIWDl~tg~~-l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
++++.+.++...+..+...+ +++|+|||++|++++. ++.|.+||+.+++. ..
T Consensus 24 ~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~------------------------- 77 (331)
T 3u4y_A 24 FFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV------------------------- 77 (331)
T ss_dssp EEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE-------------------------
T ss_pred EEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE-------------------------
Confidence 44666677777777777778 9999999997766665 89999999987654 22
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC---cEEEEECCCCcEE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK---TVRLWDMETKSCL 588 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg---tV~IWDl~t~~~i 588 (969)
.+..+...+.+++|+| +++|+++..++ .|.+||+.+++.+
T Consensus 78 ------------------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 78 ------------------------------------AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp ------------------------------------EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred ------------------------------------ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 2333445555589999 77788555553 8999999999999
Q ss_pred EEeecCCCeEEEEEecCCCC-EEEEEECCCe-EEEEeCCCce-E----EEEecCCCCEEEEEEccCCCEEEEEe-CCCcE
Q 002086 589 KLFAHNDYVTCIQFNPMDDD-YFISGSLDAK-VRIWSISDRL-V----VDWTDLHEMVTAACYTPDGQNALIGS-HKGSC 660 (969)
Q Consensus 589 ~~~~h~~~V~sv~fsp~~~~-~L~sgs~Dg~-I~IWDl~~~~-~----~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I 660 (969)
..+.+...+.+++|+| +++ ++++...++. |.+|++.... + .........+..++|+|+|+++++++ .++.|
T Consensus 122 ~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 200 (331)
T 3u4y_A 122 STIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI 200 (331)
T ss_dssp EEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence 8888778889999999 776 4555566688 9999987532 2 23334456689999999999766554 68899
Q ss_pred EEEEcCCCce---eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-E-eecC----C--
Q 002086 661 RLYSIEDSKL---HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-R-GFRN----T-- 729 (969)
Q Consensus 661 ~IwDl~~~~~---~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~-~~~~----~-- 729 (969)
.+||+.+++. .... .....+..++|+|++..++++...++.|.+||........ . .... .
T Consensus 201 ~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
T 3u4y_A 201 GILETQNPENITLLNAV---------GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP 271 (331)
T ss_dssp EEEECSSTTSCEEEEEE---------ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred EEEECCCCcccceeeec---------cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC
Confidence 9999998876 2221 1235677899999984344444567889999976543311 1 1111 1
Q ss_pred -CCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 002086 730 -SSQISAAFNADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 730 -~~V~sl~fspdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
.....++|+|||++|++++. ++.|.+||+.+
T Consensus 272 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 272 LFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp GTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred cccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 11245899999998876655 56999999986
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.81 E-value=2.8e-18 Score=184.33 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=176.0
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++...+.. .+..|.+.|.+++|+|||++|++++ ++.|++||+.+ ++....
T Consensus 28 d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--------------------------- 78 (297)
T 2ojh_A 28 NIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--------------------------- 78 (297)
T ss_dssp ETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---------------------------
T ss_pred eCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---------------------------
Confidence 34444433 4667999999999999999999987 78999999987 654331
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccC-CCCEEEEEecC-CcEEEEEe--CCCcEEE--EECCCCcEEE
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGH-LDDVLDLSWSR-SHLLLSSS--MDKTVRL--WDMETKSCLK 589 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH-~~~I~~l~fs~-~~~L~Sgs--~DgtV~I--WDl~t~~~i~ 589 (969)
+.+| ...|.+++|+| +++|++++ .++.+.| |++.+++. .
T Consensus 79 ----------------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~ 123 (297)
T 2ojh_A 79 ----------------------------------DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-R 123 (297)
T ss_dssp ----------------------------------CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-E
T ss_pred ----------------------------------ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-E
Confidence 1122 35677899999 78898888 3344444 55566553 4
Q ss_pred EeecCCCeEEEEEecCCCCEEE-EEECCCeEEEEeC--CCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc
Q 002086 590 LFAHNDYVTCIQFNPMDDDYFI-SGSLDAKVRIWSI--SDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSI 665 (969)
Q Consensus 590 ~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg~I~IWDl--~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl 665 (969)
.+.+...+.+++|+| ++.+|+ ++..++.++||++ .++....+..+...+.+++|+|++++|++++ .++.++||++
T Consensus 124 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 124 LMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp ECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence 444445599999999 888776 7888999999985 5667777777788899999999999888766 5899999988
Q ss_pred C-CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-----------CcEEEEeCCcc--eEEEEeecCCCC
Q 002086 666 E-DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-----------SRIRILDGLDI--VHKFRGFRNTSS 731 (969)
Q Consensus 666 ~-~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-----------g~I~IwD~~~~--~~~~~~~~~~~~ 731 (969)
. ....... ...+...+..+.|+|++ .+|++++.+ +.|++||.... ........+...
T Consensus 203 ~~~~~~~~~--------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 273 (297)
T 2ojh_A 203 RVDGSSVER--------ITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT 273 (297)
T ss_dssp ETTSSCEEE--------CCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT
T ss_pred CCCCCCcEE--------EecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc
Confidence 6 2222211 13455678899999998 667666654 56999997643 333333456667
Q ss_pred eEEEEEeCCCCEEEEEeCCC
Q 002086 732 QISAAFNADGKYIISASEDS 751 (969)
Q Consensus 732 V~sl~fspdg~~LaSgs~Dg 751 (969)
+..++|+|+|++|++++.|.
T Consensus 274 ~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 274 MNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCSCCBCTTSSEEEEEEECC
T ss_pred cccceECCCCCEEEEEEecc
Confidence 88899999999999887664
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.80 E-value=1e-18 Score=215.92 Aligned_cols=260 Identities=10% Similarity=0.125 Sum_probs=183.9
Q ss_pred ccCEEEEEEeCCCCEEEEEeC-CC-----cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 451 EGSIWTIKFSLDARFLASAGE-DR-----VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~-Dg-----tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
...|.+++|+|||++|++++. |+ .|++||+.+++.......+... + ++.... ....
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-------~-------~~~~~~--~~~~-- 97 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-------P-------GTETLS--DEEK-- 97 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-------c-------cccccc--chhh--
Confidence 567999999999999999998 88 9999999998876644321100 0 000000 0000
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC---cEEEEeecCCCeEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK---SCLKLFAHNDYVTCI 600 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~---~~i~~~~h~~~V~sv 600 (969)
.......+. ....|.+++|+| +++|++++. +.|++||+.++ +......|...+.++
T Consensus 98 ------------------~~~~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~ 157 (741)
T 2ecf_A 98 ------------------ARRERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDA 157 (741)
T ss_dssp ----------------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEE
T ss_pred ------------------hhhhhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccc
Confidence 000000111 123477899999 788888886 99999999998 666666788899999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCC-----------------EEEEEEccCCCEEEEEeCCC-----
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM-----------------VTAACYTPDGQNALIGSHKG----- 658 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~-----------------V~sv~fspdg~~Lasgs~dg----- 658 (969)
+|+| ++++|+.++ ++.|++||+.+++...+...... +..++|+|||++|++++.|+
T Consensus 158 ~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~ 235 (741)
T 2ecf_A 158 KLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPV 235 (741)
T ss_dssp EECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCE
T ss_pred cCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCce
Confidence 9999 999999887 46899999999887765543322 47899999999999987765
Q ss_pred ----------------------------cEEEEEcCC-CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC--
Q 002086 659 ----------------------------SCRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA-- 707 (969)
Q Consensus 659 ----------------------------~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~-- 707 (969)
.|++||+.+ ++...... ...+...+..++| |++ ..|++++.
T Consensus 236 ~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~-pDg-~~l~~~~~~~ 307 (741)
T 2ecf_A 236 QKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDL------GKEQDIYLARVNW-RDP-QHLSFQRQSR 307 (741)
T ss_dssp EEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECC------CSCSSEEEEEEEE-EET-TEEEEEEEET
T ss_pred EecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecC------CCCcceEEEEEEe-CCC-CEEEEEEecc
Confidence 788999988 76432210 0246678999999 998 56665543
Q ss_pred ---CCcEEEEeCCcceE--EEEeecCCC---CeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 708 ---DSRIRILDGLDIVH--KFRGFRNTS---SQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 708 ---Dg~I~IwD~~~~~~--~~~~~~~~~---~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+..|++||..+... .+..+. .. .+..++|+|||+++++++.||.++||.++
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLAHETS-PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEEEEEC-SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred cCCeEEEEEEECCCCceEEEEEcCC-CCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 56799999765432 222221 11 34578999999999999999998888876
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=2.7e-17 Score=183.62 Aligned_cols=252 Identities=10% Similarity=0.145 Sum_probs=173.2
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeC---CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGE---DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~---DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+..+...+..++|+|||+ |++++. ++.|.+|++.+++....
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~----------------------------------- 78 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL----------------------------------- 78 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------------------------
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------------------------
Confidence 345667888999999999 554443 68999999976653221
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECC-CCc--EEEEeecC----
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDME-TKS--CLKLFAHN---- 594 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~-t~~--~i~~~~h~---- 594 (969)
..+..+...+..++|+| +++|++++ .++.|.+|++. .+. .+..+.+.
T Consensus 79 ------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p 134 (347)
T 3hfq_A 79 ------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGP 134 (347)
T ss_dssp ------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCS
T ss_pred ------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCC
Confidence 12334566778899999 77788877 78999999996 333 23333322
Q ss_pred ------CCeEEEEEecCCCCEEEEEECCCeEEEEeCC-CceEEEE----ecCCCCEEEEEEccCCCEEEE-EeCCCcEEE
Q 002086 595 ------DYVTCIQFNPMDDDYFISGSLDAKVRIWSIS-DRLVVDW----TDLHEMVTAACYTPDGQNALI-GSHKGSCRL 662 (969)
Q Consensus 595 ------~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~-~~~~~~~----~~~~~~V~sv~fspdg~~Las-gs~dg~I~I 662 (969)
..+.+++|+| +++++++...++.|++|++. ++.+... ......+..++|+|+|+++++ +..++.|.+
T Consensus 135 ~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp STTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 2488999999 88876777778999999998 5544322 122346888999999997666 556889999
Q ss_pred EEcCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCCeEEEEE
Q 002086 663 YSIED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSSQISAAF 737 (969)
Q Consensus 663 wDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~V~sl~f 737 (969)
|++.. ++......+............+..++|+|++..++++...++.|.+|+... .........+...+..++|
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp EEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE
T ss_pred EEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE
Confidence 99874 443222221111110111246889999999944446667799999999652 2222222233445779999
Q ss_pred eCCCCEEEEEeCC-CcEEEEEcC
Q 002086 738 NADGKYIISASED-SQVYVWKRE 759 (969)
Q Consensus 738 spdg~~LaSgs~D-g~I~IWdl~ 759 (969)
+|||++|++++.+ +.|.+|+++
T Consensus 294 spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEEEcCCCcEEEEEEe
Confidence 9999999888765 899999664
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=1e-17 Score=184.94 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=148.4
Q ss_pred cCCCCEEEEEecC-CcEEEEEeCC-CcEEEEECC--CCcE--EEEeecCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeC
Q 002086 552 GHLDDVLDLSWSR-SHLLLSSSMD-KTVRLWDME--TKSC--LKLFAHNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSI 624 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sgs~D-gtV~IWDl~--t~~~--i~~~~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl 624 (969)
.|...+.+++|+| +++|++++.+ +.|.+|++. +++. +..+.....+.+++|+| ++++|++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 3566788899999 7888888876 999999998 5553 34444455899999999 8887776665 889999999
Q ss_pred ---CCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC-Cceeeee--eeeecccccCCCCCeEEEEEcCC
Q 002086 625 ---SDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIED-SKLHQLN--QVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 625 ---~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~-~~~~~~~--~~~~~~~~~~h~~~It~l~fspd 697 (969)
..............+.+++|+|+|+++++++ .++.|.+||+.+ ++..... ... ......+..++|+|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-----TVEGAGPRHMVFHPN 188 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-----CSTTCCEEEEEECTT
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-----cCCCCCcceEEECCC
Confidence 4445555566666789999999999888877 899999999987 5543221 111 223457889999999
Q ss_pred CCceEEEEeCCCcEEEEeCCc--c----eEEEEee----cCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 002086 698 NPSEVLVTSADSRIRILDGLD--I----VHKFRGF----RNTSSQISAAFNADGKYIISA-SEDSQVYVWKREE 760 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~--~----~~~~~~~----~~~~~V~sl~fspdg~~LaSg-s~Dg~I~IWdl~t 760 (969)
+..+++++..++.|++|+... . ....... .....+..++|+|+|++|+.+ ..++.|++|++..
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 843445556899999999742 1 1112111 112356689999999988754 4789999999973
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.79 E-value=5e-17 Score=179.61 Aligned_cols=238 Identities=11% Similarity=0.137 Sum_probs=169.9
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 457 IKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 457 l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
..|.+++. .+++++.++.|.+||+.+++.+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~----------------------------------------------- 35 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ----------------------------------------------- 35 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-----------------------------------------------
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-----------------------------------------------
Confidence 34556555 578888899999999998877552
Q ss_pred cceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcE-EEEee-cCCCeEEEEEecCCCCEEE
Q 002086 536 PETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSC-LKLFA-HNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~-i~~~~-h~~~V~sv~fsp~~~~~L~ 611 (969)
+..+...+ +++|+| +++|++++. ++.|.+||+.+++. ...+. +..+..+++|+| ++++|+
T Consensus 36 --------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~ 99 (331)
T 3u4y_A 36 --------------ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAV 99 (331)
T ss_dssp --------------EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEE
T ss_pred --------------EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEE
Confidence 22234455 899999 665665555 89999999999987 66664 444444499999 899888
Q ss_pred EEECCC---eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeeecccccCCC
Q 002086 612 SGSLDA---KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG-SHKGS-CRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 612 sgs~Dg---~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~-I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
++..++ .|.+||+.+++++........+..++|+|+|++++++ ..++. |.+|++............ .....
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~----~~~~~ 175 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE----FISGG 175 (331)
T ss_dssp ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE----EECSS
T ss_pred EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc----cccCC
Confidence 655553 8999999999988877777788999999999866554 55688 999999864432211110 11334
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCC
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREEH 761 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t~ 761 (969)
..+..++|+|++..+++++..++.|++||...... ..........+..++|+|||++|+.++ .++.|.+||+.++
T Consensus 176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 55899999999844556666789999999764322 122222345677899999999776665 4788999999873
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.78 E-value=7.3e-18 Score=185.70 Aligned_cols=256 Identities=12% Similarity=0.091 Sum_probs=185.8
Q ss_pred cccccceeeeEecccc-c-CEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 436 KDLSALHLCQEIQAHE-G-SIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~-~-~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+++.+.+.+..+.... . .+.+++|+|||++| ++++.++.|.+||+.+++.+..+....
T Consensus 16 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------------- 76 (337)
T 1pby_B 16 IDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------------- 76 (337)
T ss_dssp EETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-------------------
T ss_pred EECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-------------------
Confidence 3555666666665322 2 58899999999865 556668999999999887765322100
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe------------CCCcEEE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS------------MDKTVRL 579 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs------------~DgtV~I 579 (969)
...|...+.+++|+| +++|+++. .++.|.+
T Consensus 77 -------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v 119 (337)
T 1pby_B 77 -------------------------------------PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119 (337)
T ss_dssp -------------------------------------TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred -------------------------------------cccccccccceEECCCCCEEEEEecccccccccccccCceEEE
Confidence 000122455788998 66888876 6799999
Q ss_pred EECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC-
Q 002086 580 WDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG- 658 (969)
Q Consensus 580 WDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg- 658 (969)
||+.+++.+..+.....+.+++|+| ++++|+++ ++.|++||+.++++............+.|+|++..+++.+..+
T Consensus 120 ~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 196 (337)
T 1pby_B 120 YDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196 (337)
T ss_dssp EETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred EECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCC
Confidence 9999999888887777889999999 88877777 6899999999998776554433112347899988776544332
Q ss_pred -----------------------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 659 -----------------------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 659 -----------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.|.+||+.+++.. .... ..+...+.+++|+|++ .+++++ ++.|++||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~------~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV------RIMDVFYFSTAVNPAK-TRAFGA--YNVLESFD 266 (337)
T ss_dssp EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE------EECSSCEEEEEECTTS-SEEEEE--ESEEEEEE
T ss_pred ceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec------CCCCCceeeEEECCCC-CEEEEe--CCeEEEEE
Confidence 4689999988764 2211 3345678899999998 566666 79999999
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.......... .....+.+++|+|||++|++++.++.|++||+.++
T Consensus 267 ~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 267 LEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCCCcCccee-cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 7764433222 23345778999999999999999999999999884
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=7.3e-17 Score=179.36 Aligned_cols=243 Identities=9% Similarity=0.074 Sum_probs=182.7
Q ss_pred cccCEEEEEEeCCCCEEEEEeC-------CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 450 HEGSIWTIKFSLDARFLASAGE-------DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~-------DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 86 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------------------------- 86 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------------------
Confidence 4567889999999998888774 5689999999887665321
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCC-----
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHND----- 595 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~----- 595 (969)
....+..++|++ ++ ++++...++.|.+||..+++.+..+....
T Consensus 87 ------------------------------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 136 (353)
T 3vgz_A 87 ------------------------------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE 136 (353)
T ss_dssp ------------------------------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS
T ss_pred ------------------------------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc
Confidence 112345678888 56 45555668999999999999888774321
Q ss_pred -----CeEEEEEecCCCCEEEEEE--CCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 596 -----YVTCIQFNPMDDDYFISGS--LDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 596 -----~V~sv~fsp~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
.+.+++|+| +++++++++ .++.|.+||+.+++...... +...+..++|+|+|+++++++.++.|.+||+.+
T Consensus 137 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~ 215 (353)
T 3vgz_A 137 EVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD 215 (353)
T ss_dssp SCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT
T ss_pred ccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 278999999 888777665 47899999999998887776 556688999999999999999999999999999
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
++....... ....+...+..++|+|++..++++...++.|++||..+........... ...++|+|+|++|+.+
T Consensus 216 ~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 216 NKILSRKKL----LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVT 289 (353)
T ss_dssp TEEEEEEEC----CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEE
T ss_pred CeEEEEEEc----CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEE
Confidence 876544322 1123456788999999985444455556999999976543322222222 2468999999976655
Q ss_pred e-CCCcEEEEEcCCC
Q 002086 748 S-EDSQVYVWKREEH 761 (969)
Q Consensus 748 s-~Dg~I~IWdl~t~ 761 (969)
+ .++.|.+||+.++
T Consensus 290 ~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 290 HRQAGKVSVIDAKSY 304 (353)
T ss_dssp ETTTTEEEEEETTTT
T ss_pred ECCCCeEEEEECCCC
Confidence 5 6899999999873
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.76 E-value=9.2e-17 Score=172.45 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=148.0
Q ss_pred eccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-CcEEEEe-ec-CCCeEEEEEecCCCCEEEEEEC--C--CeEEE
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-KSCLKLF-AH-NDYVTCIQFNPMDDDYFISGSL--D--AKVRI 621 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-~h-~~~V~sv~fsp~~~~~L~sgs~--D--g~I~I 621 (969)
+..|...|.+++|+| +++|++++ ++.|++||+.+ ++..... .+ ...|.+++|+| ++.+|++++. + ..|.+
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEE
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEE
Confidence 345788899999999 78888876 88999999999 8877666 33 47889999999 9999999983 3 44555
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcC--CCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNAL-IGSHKGSCRLYSIE--DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~La-sgs~dg~I~IwDl~--~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
|++.++....+.. ...+..++|+|++++|+ ++..++.++||++. ++.... ...+...+.++.|+|++
T Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 115 LPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR---------LTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp EETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE---------CCCSSSCEEEEEECTTS
T ss_pred EECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE---------cccCCCccccceECCCC
Confidence 5656666544433 44589999999999887 67889999999864 333211 13456789999999998
Q ss_pred CceEEEE-eCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC-----------CcEEEEEcCCC
Q 002086 699 PSEVLVT-SADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASED-----------SQVYVWKREEH 761 (969)
Q Consensus 699 ~~~l~sg-s~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D-----------g~I~IWdl~t~ 761 (969)
..|+++ ..++.++||+.. ..........+...+..++|+|+|++|++++.+ +.|++||+.++
T Consensus 185 -~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 185 -RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp -SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred -CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 455544 468999999853 222222333445678899999999999988876 56999999873
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.76 E-value=2.8e-17 Score=203.07 Aligned_cols=257 Identities=11% Similarity=0.151 Sum_probs=179.1
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
...+..|.+.|.+++|||||++||.++ ++.|++||+.+++...........+. .+.
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~-------------~g~---------- 199 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG-------------NGI---------- 199 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE-------------ESC----------
T ss_pred EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee-------------ccc----------
Confidence 345778889999999999999999988 56899999998876553221100000 000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC---------------------------
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK--------------------------- 575 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg--------------------------- 575 (969)
... ........+.++.|+| +++|++++.|+
T Consensus 200 ------~~~----------------v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 200 ------AEF----------------VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ------CCH----------------HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ------cce----------------eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 000 0001123356789999 78888887765
Q ss_pred ------cEEEEECCC-CcEEEEe---ecCCCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCCceEEEEecCCC---
Q 002086 576 ------TVRLWDMET-KSCLKLF---AHNDYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISDRLVVDWTDLHE--- 637 (969)
Q Consensus 576 ------tV~IWDl~t-~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~~~~~~~~~~~~--- 637 (969)
.|++||+.+ ++..... .|...+..++| | ++++|++++. +..|++||+.+++.........
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 899999998 8876654 47788999999 9 9998887654 5679999999987765544322
Q ss_pred --CEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeeecccccCCCCCeEEE-EEcCCCCceEEEEeCCC--cE
Q 002086 638 --MVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGF-QFSPSNPSEVLVTSADS--RI 711 (969)
Q Consensus 638 --~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l-~fspd~~~~l~sgs~Dg--~I 711 (969)
.+..++|+|+|++++++..+|.++||.+.. +. ... ...+...+..+ .|+|++..++++++.++ .+
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~--------l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA--------LTHGNWSVDELLAVDEKAGLAYFRAGIESARES 406 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE--------SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee--------eeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence 346899999999888999999888887652 22 111 13456678777 59999854555666666 88
Q ss_pred EEEeCCc---ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEcCC
Q 002086 712 RILDGLD---IVHKFRGFRNTSSQISAAFNADGKYIISASED----SQVYVWKREE 760 (969)
Q Consensus 712 ~IwD~~~---~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D----g~I~IWdl~t 760 (969)
+||+... ....+. ....+..++|+|||++|+....+ ..+++|+...
T Consensus 407 ~l~~~~~~g~~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 407 QIYAVPLQGGQPQRLS---KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEEEETTCCCCEECC---CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred EEEEEEcCCCCeeecc---cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 9998432 122222 24567899999999998876554 4689998764
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.76 E-value=5.7e-17 Score=178.52 Aligned_cols=273 Identities=10% Similarity=-0.019 Sum_probs=192.2
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS 543 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 543 (969)
++|++++.++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~---------------------------------------------------- 29 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI---------------------------------------------------- 29 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC----------------------------------------------------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc----------------------------------------------------
Confidence 4799999999999999998877653210
Q ss_pred CCceeEeccCCC-CEEEEEecC-CcE-EEEEeCCCcEEEEECCCCcEEEEeecCC------CeEEEEEecCCCCEEEEEE
Q 002086 544 EKPFCSFIGHLD-DVLDLSWSR-SHL-LLSSSMDKTVRLWDMETKSCLKLFAHND------YVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 544 ~k~~~~l~gH~~-~I~~l~fs~-~~~-L~Sgs~DgtV~IWDl~t~~~i~~~~h~~------~V~sv~fsp~~~~~L~sgs 614 (969)
++.. .+..++|+| ++. ++++..++.|.+||+.+++.+..+.... .+.+++|+| ++++|+++.
T Consensus 30 --------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~ 100 (337)
T 1pby_B 30 --------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYE 100 (337)
T ss_dssp --------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEE
T ss_pred --------CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEe
Confidence 1111 356789998 545 4566678999999999999887774333 788999999 888888886
Q ss_pred ------------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 615 ------------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 615 ------------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
.++.|.+||+.+++..........+..++|+|+|++|+++ ++.|++||+.+++.......
T Consensus 101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~------ 172 (337)
T 1pby_B 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI------ 172 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS------
T ss_pred cccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec------
Confidence 6799999999998887776666778899999999988888 68999999998876533211
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCC-----------------------cEEEEeCCcceE-EEEeecCCCCeEEEEEe
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADS-----------------------RIRILDGLDIVH-KFRGFRNTSSQISAAFN 738 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg-----------------------~I~IwD~~~~~~-~~~~~~~~~~V~sl~fs 738 (969)
......+ .|+|++..+++++..++ .|.+||...... ......+...+.+++|+
T Consensus 173 ~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 173 QSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp TTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred cccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEEC
Confidence 1111222 67888743333333333 468999765433 23333445567889999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCc
Q 002086 739 ADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPT 818 (969)
Q Consensus 739 pdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~ 818 (969)
|||++|+++ ++.|++||+.++ +........ ..+.
T Consensus 250 ~dg~~l~~~--~~~v~~~d~~~~------~~~~~~~~~--------------------------------------~~~~ 283 (337)
T 1pby_B 250 PAKTRAFGA--YNVLESFDLEKN------ASIKRVPLP--------------------------------------HSYY 283 (337)
T ss_dssp TTSSEEEEE--ESEEEEEETTTT------EEEEEEECS--------------------------------------SCCC
T ss_pred CCCCEEEEe--CCeEEEEECCCC------cCcceecCC--------------------------------------Ccee
Confidence 999999988 789999999873 211111000 1122
Q ss_pred ccccCCCCCCccccCCCCccccCCCCCCccccCCCC
Q 002086 819 SATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSP 854 (969)
Q Consensus 819 ~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~ 854 (969)
..+++|++.+++..+.+..+..|...++.....+..
T Consensus 284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 345688888777777788899998777765554433
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.75 E-value=7.5e-16 Score=171.16 Aligned_cols=250 Identities=10% Similarity=0.089 Sum_probs=182.4
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++.+++....+.. ...+.+++|+|+|++| +++..++.|.+||..+++.+..+.......
T Consensus 75 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------------- 134 (353)
T 3vgz_A 75 DPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR------------------- 134 (353)
T ss_dssp CTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-------------------
T ss_pred cCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-------------------
Confidence 5555666666654 3457899999999955 455568999999999988766433110000
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe--CCCcEEEEECCCCcEEEEee
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS--MDKTVRLWDMETKSCLKLFA 592 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs--~DgtV~IWDl~t~~~i~~~~ 592 (969)
.-......+.++.|+| ++++++++ .++.|.+||+.+++.+..+.
T Consensus 135 ---------------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 135 ---------------------------------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp ---------------------------------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred ---------------------------------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 0000112367899998 67666665 58899999999999998886
Q ss_pred -cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-----CCCEEEEEEccCCCEEEEEeC-CCcEEEEEc
Q 002086 593 -HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-----HEMVTAACYTPDGQNALIGSH-KGSCRLYSI 665 (969)
Q Consensus 593 -h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-----~~~V~sv~fspdg~~Lasgs~-dg~I~IwDl 665 (969)
+...+.+++|+| ++++|++++.++.|.+||+.+++....... ...+..++|+|+++++++++. ++.|.+||+
T Consensus 182 ~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 182 NTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp CCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred CCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 667799999999 999999999999999999999987765443 456888999999998877665 489999999
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
.+++....... . ....++|+|++..++++...++.|.+||.......... .....+.+++|+|||++|+
T Consensus 261 ~~~~~~~~~~~-------~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 261 RNGNILAKVAA-------P---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF-DTPTHPNSLALSADGKTLY 329 (353)
T ss_dssp TTCCEEEEEEC-------S---SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-ECCSEEEEEEECTTSCEEE
T ss_pred CCCcEEEEEEc-------C---CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE-ecCCCCCeEEEcCCCCEEE
Confidence 98876544321 1 12468999998545555557999999997655433322 2344678999999999887
Q ss_pred EEeCCC
Q 002086 746 SASEDS 751 (969)
Q Consensus 746 Sgs~Dg 751 (969)
.+..++
T Consensus 330 v~~~~~ 335 (353)
T 3vgz_A 330 VSVKQK 335 (353)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 777664
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=2e-15 Score=169.52 Aligned_cols=245 Identities=12% Similarity=0.194 Sum_probs=169.9
Q ss_pred cccCEEEEEEeCCCCEEEEEeCC----CcEEEEeccc--ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 450 HEGSIWTIKFSLDARFLASAGED----RVIHVWEVQE--CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~D----gtVrIWDl~t--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
|...+..++|+|||++|++++.+ +.|.+|++.. ++....
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~----------------------------------- 92 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL----------------------------------- 92 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE-----------------------------------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe-----------------------------------
Confidence 77888999999999999999886 7999999875 333211
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe-CCCcEEEEECCCCcEEE----Eeec-----
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS-MDKTVRLWDMETKSCLK----LFAH----- 593 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs-~DgtV~IWDl~t~~~i~----~~~h----- 593 (969)
.....+......+++ .+++|++++ .++.|.+|++.....+. ...+
T Consensus 93 ------------------------~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~ 147 (361)
T 3scy_A 93 ------------------------NTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP 147 (361)
T ss_dssp ------------------------EEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred ------------------------eEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence 122234456677777 666666665 68899999997543221 1122
Q ss_pred ------CCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCce-------E-------EEEecCCCCEEEEEEccCCCEEE
Q 002086 594 ------NDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRL-------V-------VDWTDLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 594 ------~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~-------~-------~~~~~~~~~V~sv~fspdg~~La 652 (969)
...+.+++|+| ++++|++++ .++.|.+|++.... + .........+..++|+|+|++++
T Consensus 148 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 148 DKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp CTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 23458899999 888666555 58899999887432 1 22334456688999999999888
Q ss_pred EEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC--CCcEEEEeCC--c-ceEEEEee
Q 002086 653 IGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA--DSRIRILDGL--D-IVHKFRGF 726 (969)
Q Consensus 653 sgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~--Dg~I~IwD~~--~-~~~~~~~~ 726 (969)
+++ .++.|.+|++.++.+.....+. ....+......++|+|++ ++|+++.. ++.|.+|+.. . ........
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVA---ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEE---SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEe---cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 777 6899999999877653332221 112344567899999999 56655554 5899999964 1 22222222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC
Q 002086 727 RNTSSQISAAFNADGKYIISAS-EDSQVYVWKRE 759 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~ 759 (969)
.....+..++|+|||++|++++ .++.|.+|+++
T Consensus 303 ~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 303 LTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred cCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2244577899999999998888 57899997765
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.74 E-value=7.1e-17 Score=198.70 Aligned_cols=258 Identities=8% Similarity=0.038 Sum_probs=180.9
Q ss_pred ccccccceeeeEeccccc---CEEEEEEeCCCCEEEEEeCC---------CcEEEEecccceEEEeecCCccCccccccc
Q 002086 435 YKDLSALHLCQEIQAHEG---SIWTIKFSLDARFLASAGED---------RVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~---~I~~l~fSpDg~~LaTgs~D---------gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~ 502 (969)
++++.+.+....+.+|.. .|.+++|||||++|++++.+ +.|.+||+.+++.... .
T Consensus 41 ~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~------------ 107 (723)
T 1xfd_A 41 LWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-D------------ 107 (723)
T ss_dssp EBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-C------------
T ss_pred EEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec-c------------
Confidence 346666666677777776 49999999999999999875 7788999987654211 0
Q ss_pred CCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEE
Q 002086 503 SSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWD 581 (969)
Q Consensus 503 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWD 581 (969)
...+|...+..++|+| ++.|++++. +.|++||
T Consensus 108 ----------------------------------------------~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 108 ----------------------------------------------PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp ----------------------------------------------CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ----------------------------------------------CCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 1123555677899999 778888876 7999999
Q ss_pred CCCCcEEEEee-cCCC------------------eEEEEEecCCCCEEEEEECCC-------------------------
Q 002086 582 METKSCLKLFA-HNDY------------------VTCIQFNPMDDDYFISGSLDA------------------------- 617 (969)
Q Consensus 582 l~t~~~i~~~~-h~~~------------------V~sv~fsp~~~~~L~sgs~Dg------------------------- 617 (969)
+.+++...... +... +.+++|+| ++++|++++.|+
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 99988776652 3333 37899999 999999887653
Q ss_pred ---------eEEEEeCCCceE-EEEecC------CCCEEEEEEccCCCEEEEEeC----CCcEEEEEcCCCceeeeeeee
Q 002086 618 ---------KVRIWSISDRLV-VDWTDL------HEMVTAACYTPDGQNALIGSH----KGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 618 ---------~I~IWDl~~~~~-~~~~~~------~~~V~sv~fspdg~~Lasgs~----dg~I~IwDl~~~~~~~~~~~~ 677 (969)
.|++||+.+++. ..+..+ ...+..++|+|||++|++... +..|++||+.+++.......
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~- 298 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED- 298 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-
Confidence 799999998874 444333 456899999999998877653 35799999998876443211
Q ss_pred ecccccCCCCCe----EEEEEcCCCCceEEE-EeCCC------cEEEEe-CCcce--EEEEeecCCCCeEE-EEEeCCCC
Q 002086 678 FQTKKKSSTRKI----TGFQFSPSNPSEVLV-TSADS------RIRILD-GLDIV--HKFRGFRNTSSQIS-AAFNADGK 742 (969)
Q Consensus 678 ~~~~~~~h~~~I----t~l~fspd~~~~l~s-gs~Dg------~I~IwD-~~~~~--~~~~~~~~~~~V~s-l~fspdg~ 742 (969)
.+...+ ..++|+|++..++++ +..++ .|++|| ..... .......+...+.. ++|+|||+
T Consensus 299 ------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~ 372 (723)
T 1xfd_A 299 ------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN 372 (723)
T ss_dssp ------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT
T ss_pred ------ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC
Confidence 112222 367899999545544 55666 577787 22221 01111122333444 69999999
Q ss_pred EEEEEeCC---CcEEEEEcCC
Q 002086 743 YIISASED---SQVYVWKREE 760 (969)
Q Consensus 743 ~LaSgs~D---g~I~IWdl~t 760 (969)
+|+..+.+ +.++||++..
T Consensus 373 ~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 373 KIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEESSSCTTCCEEEEECS
T ss_pred EEEEEEcCCCCcceEEEEEeC
Confidence 99876655 7899999874
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=4.5e-17 Score=195.83 Aligned_cols=232 Identities=12% Similarity=0.092 Sum_probs=171.5
Q ss_pred cccCEEEEEEeCCCCEEEEEeC-CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~-DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+..+|++++|+|||++||+++. ||+++||++.+++...
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----------------------------------------- 58 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----------------------------------------- 58 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-----------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-----------------------------------------
Confidence 3567999999999999999887 9999999986655432
Q ss_pred CCCcccccceeeecCCCceeEeccCC-CCEEEEEecCCcEEEEEeC---CCcEEEEECCC---CcEEEEeecCCCeEEEE
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHL-DDVLDLSWSRSHLLLSSSM---DKTVRLWDMET---KSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~-~~I~~l~fs~~~~L~Sgs~---DgtV~IWDl~t---~~~i~~~~h~~~V~sv~ 601 (969)
+..|. ..+..+.|+|++++++++. +....||.+.. +... .+.....+...+
T Consensus 59 ---------------------lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~ 116 (582)
T 3o4h_A 59 ---------------------LNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILS 116 (582)
T ss_dssp ---------------------CCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEE
T ss_pred ---------------------eecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeee
Confidence 22233 5788999999866776665 45556655432 2222 333333455678
Q ss_pred EecCCCC-EEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCCCceeeeeee
Q 002086 602 FNPMDDD-YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK----GSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 602 fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d----g~I~IwDl~~~~~~~~~~~ 676 (969)
|+| +++ .+++.+.++.+.+||+.+++...+..+.. .+++|+|||++|++++.+ +.|++||+.+++....
T Consensus 117 ~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l--- 190 (582)
T 3o4h_A 117 GVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF--- 190 (582)
T ss_dssp EEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE---
T ss_pred eCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe---
Confidence 888 554 44444555556699999998777665555 789999999999988776 7899999988875422
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCCcceEEEEeecCCCCeEEEE--------EeCCCCEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGLDIVHKFRGFRNTSSQISAA--------FNADGKYIIS 746 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~~~~~~~~~~~~~~~V~sl~--------fspdg~~LaS 746 (969)
..+...+..++|+||| +.|+++..++ .|++||....... ....+...+..+. |+|||.++++
T Consensus 191 ------~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~ 262 (582)
T 3o4h_A 191 ------DSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVV 262 (582)
T ss_dssp ------CCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred ------ecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEE
Confidence 4566778999999999 6777888888 8999997654444 3333444455556 9999999999
Q ss_pred EeCCCcEEEEEc
Q 002086 747 ASEDSQVYVWKR 758 (969)
Q Consensus 747 gs~Dg~I~IWdl 758 (969)
++.|+.++||++
T Consensus 263 ~~~~g~~~l~~~ 274 (582)
T 3o4h_A 263 ARREGRSAVFID 274 (582)
T ss_dssp EEETTEEEEEET
T ss_pred EEcCCcEEEEEE
Confidence 999999999999
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.74 E-value=4.8e-17 Score=199.94 Aligned_cols=197 Identities=13% Similarity=0.136 Sum_probs=151.2
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-----c
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-----R 627 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-----~ 627 (969)
+...|.+++|+|+..++.+ .++.|++||+.+++......+...+.+++|+| ++++|+++ .|+.|++||+.+ +
T Consensus 80 ~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 80 DAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp --CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cccCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCC
Confidence 3467899999997655555 46999999999998888888888899999999 99999885 689999999998 7
Q ss_pred eEEEEecCCCC---------------EEEEEEccCCCEEEEEe---------------------------------CCCc
Q 002086 628 LVVDWTDLHEM---------------VTAACYTPDGQNALIGS---------------------------------HKGS 659 (969)
Q Consensus 628 ~~~~~~~~~~~---------------V~sv~fspdg~~Lasgs---------------------------------~dg~ 659 (969)
+.......... +.+++|+|||++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 76665443332 48899999999999987 4468
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC-----cEEEEeCCcc-e-EEEEeecCCC--
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS-----RIRILDGLDI-V-HKFRGFRNTS-- 730 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg-----~I~IwD~~~~-~-~~~~~~~~~~-- 730 (969)
|++||+.+++...... ...+...+..++|+|++ ..|++++.++ .|++||..+. . ..+.......
T Consensus 237 l~~~d~~~~~~~~~~~------~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQT------GEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEETTTTEEEECCC------CSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred EEEEECCCCceEeecc------CCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 9999999887543211 12456779999999998 6777776665 8999997654 2 2222222222
Q ss_pred -CeEEEEEeC--CCCEEEEEeCCCcEEEEEcC
Q 002086 731 -SQISAAFNA--DGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 731 -~V~sl~fsp--dg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+..+.|+| ||++|++++.|+.++||.++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 235689999 99999999999999999886
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=7.9e-17 Score=187.28 Aligned_cols=260 Identities=13% Similarity=0.172 Sum_probs=171.8
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
+...+..|++++++.+|++++.|+ |+||+........... ...
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---------------------~~~--------------- 77 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---------------------DDP--------------- 77 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---------------------CCT---------------
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---------------------cCc---------------
Confidence 345689999999999999999998 8999875321100000 000
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE----EEeCCCcEEEEECCCC--------cE---EEEe-e
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL----SSSMDKTVRLWDMETK--------SC---LKLF-A 592 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~----Sgs~DgtV~IWDl~t~--------~~---i~~~-~ 592 (969)
..+. ...+. ....|...|.+++|++ +++|+ +|+.|++|+|||+.++ +. +..+ +
T Consensus 78 -------~~~~--~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 147 (434)
T 2oit_A 78 -------NKIV--DKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD 147 (434)
T ss_dssp -------TCEE--ECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS
T ss_pred -------cccc--ccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC
Confidence 0000 00011 1124678899999999 78888 7889999999998754 22 2333 6
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
|...|.+++|+|..+.+|++++.||+|++||++++... ....|...|.+++|+|+|++|++|+.||.|++||++ ++..
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 89999999999944889999999999999999987544 455677899999999999999999999999999998 3332
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEE-EeCCCc------EEEEeCCcc----eEEEEee--------cCCCCe
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV-TSADSR------IRILDGLDI----VHKFRGF--------RNTSSQ 732 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s-gs~Dg~------I~IwD~~~~----~~~~~~~--------~~~~~V 732 (969)
....... .....|...|.++.|++++ .++++ ...+|. +++|++.+. ...+..+ ......
T Consensus 227 ~~~~~~~-~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 304 (434)
T 2oit_A 227 KVIPCPP-FYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHH 304 (434)
T ss_dssp EEECCCT-TCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCC
T ss_pred ccccCCc-ccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcc
Confidence 2211110 0001234589999999976 34433 344433 899996643 1222221 111222
Q ss_pred EEEEEeCCCCEEEEEeC-CCcEEEEEcC
Q 002086 733 ISAAFNADGKYIISASE-DSQVYVWKRE 759 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~-Dg~I~IWdl~ 759 (969)
..+.+-++.+++++++. .+.|.|....
T Consensus 305 ~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 305 YYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred eeeehhccCCEEEEecCCCCceeEEEec
Confidence 23344477777766655 4446666644
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=1.3e-16 Score=176.87 Aligned_cols=238 Identities=11% Similarity=-0.003 Sum_probs=171.5
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 456 TIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 456 ~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
++++++++.++++++.++.|++||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------------------- 39 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------------------- 39 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------------------------
Confidence 456788899999999999999999998877653221
Q ss_pred cceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeec-------CCCeEEEEEecCC
Q 002086 536 PETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAH-------NDYVTCIQFNPMD 606 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h-------~~~V~sv~fsp~~ 606 (969)
+....+..++|+| ++++ +++..++.|.+||+.+++.+..+.. ...+.+++|+| +
T Consensus 40 ----------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-d 102 (349)
T 1jmx_B 40 ----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-D 102 (349)
T ss_dssp ----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-T
T ss_pred ----------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-C
Confidence 0111355788998 5544 5566789999999999998877643 23388999999 8
Q ss_pred CCEEEEEECC------------CeEEEEeCCCce---EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 607 DDYFISGSLD------------AKVRIWSISDRL---VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 607 ~~~L~sgs~D------------g~I~IWDl~~~~---~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+++|++++.+ +.|.+||+.+++ .+....+...+.+++|+|+|+ +++++ +.|.+||+.+++..
T Consensus 103 g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 103 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYT 179 (349)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEE
T ss_pred CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCcee
Confidence 9999988865 899999998743 333444555688999999999 66554 34999999888765
Q ss_pred eeeeeeec------------------------c------c------------------------------ccCCCCCeEE
Q 002086 672 QLNQVDFQ------------------------T------K------------------------------KKSSTRKITG 691 (969)
Q Consensus 672 ~~~~~~~~------------------------~------~------------------------------~~~h~~~It~ 691 (969)
........ . . .......+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 43221100 0 0 0001224567
Q ss_pred EEEcC-CCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 692 FQFSP-SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 692 l~fsp-d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++|+| ++ .+++++ ++.|++||..+........ ....+.+++|+|||++|++++.++.|++||+.+.
T Consensus 260 ~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 260 GLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEECSSCT-TEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred eEecCCCC-CEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 88889 87 566666 8899999987654322222 2334678999999999999888999999999874
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.73 E-value=5.4e-16 Score=180.23 Aligned_cols=169 Identities=11% Similarity=0.078 Sum_probs=129.0
Q ss_pred ccccCEEEEEEeCCCCEEE----EEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 449 AHEGSIWTIKFSLDARFLA----SAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~La----Tgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
.|.+.|++++|+|+|++|| +|+.|++|+|||+.++.. +.....
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~-----~~~~~~---------------------------- 136 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSN-----EAKQQK---------------------------- 136 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHC-----TTCSSC----------------------------
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccccc-----CCcCCc----------------------------
Confidence 3678999999999999999 888999999999875310 000000
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEE-eecCCCeEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKL-FAHNDYVTCIQ 601 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~-~~h~~~V~sv~ 601 (969)
.....+..+.+|...|.+++|+| +.+|++++.||+|++||++++..+.. .+|...|.+++
T Consensus 137 -----------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~ 199 (434)
T 2oit_A 137 -----------------RPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVC 199 (434)
T ss_dssp -----------------CCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEE
T ss_pred -----------------ceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEE
Confidence 00001234567999999999998 57999999999999999999876543 47899999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-------CCCEEEEEEccCCCEEEE-EeCCC------cEEEEEcCC
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-------HEMVTAACYTPDGQNALI-GSHKG------SCRLYSIED 667 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-------~~~V~sv~fspdg~~Las-gs~dg------~I~IwDl~~ 667 (969)
|+| ++.+|++|+.||+|++||++......+..+ ...|.+++|++++.++++ ...+| .+++|++..
T Consensus 200 wsp-dg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 200 WSP-KGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp ECT-TSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EcC-CCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 999 899999999999999999983333333222 227999999998877765 33443 389999986
Q ss_pred C
Q 002086 668 S 668 (969)
Q Consensus 668 ~ 668 (969)
.
T Consensus 279 ~ 279 (434)
T 2oit_A 279 K 279 (434)
T ss_dssp T
T ss_pred C
Confidence 5
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.72 E-value=5.7e-17 Score=199.54 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=168.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.+.+++|+|||+++++ +.||+|++||+.+++....+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~------------------------------------------- 53 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI------------------------------------------- 53 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-------------------------------------------
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-------------------------------------------
Confidence 4678999999998877 78999999999987654422
Q ss_pred ccccceeeecCCCceeEeccCCC---CEEEEEecC-CcEEEEEeCC---------CcEEEEECCCCcEEEEe---ecCCC
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLD---DVLDLSWSR-SHLLLSSSMD---------KTVRLWDMETKSCLKLF---AHNDY 596 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~---~I~~l~fs~-~~~L~Sgs~D---------gtV~IWDl~t~~~i~~~---~h~~~ 596 (969)
.+|.. .|.+++|+| +++|++++.+ +.|++||+.++++.... .|...
T Consensus 54 ------------------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 115 (723)
T 1xfd_A 54 ------------------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK 115 (723)
T ss_dssp ------------------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred ------------------ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccc
Confidence 22332 478999999 7889998775 78889999999874333 34455
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-CCC------------------EEEEEEccCCCEEEEEeCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-HEM------------------VTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-~~~------------------V~sv~fspdg~~Lasgs~d 657 (969)
+..++|+| ++++|+.++. +.|++||+.+++...+... ... +.+++|+|||++|++++.+
T Consensus 116 ~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 116 LQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp CSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 89999999 9999999886 7999999998876665443 222 3789999999999988755
Q ss_pred C----------------------------------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 658 G----------------------------------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 658 g----------------------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
+ .|++||+.+++...... .......+...+..++|+|++ .+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~~~~~~SpDg-~~l~ 270 (723)
T 1xfd_A 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM--PPDDPRMREYYITMVKWATST-KVAV 270 (723)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC--CCCCGGGSSEEEEEEEESSSS-EEEE
T ss_pred CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee--CCccCCCccceeEEEEEeCCC-eEEE
Confidence 3 78899998776422111 000112235678999999998 5665
Q ss_pred EEeC----CCcEEEEeCCcceEEEE-eecCCCCe----EEEEEeCCCCEEEE--EeCCC------cEEEEE
Q 002086 704 VTSA----DSRIRILDGLDIVHKFR-GFRNTSSQ----ISAAFNADGKYIIS--ASEDS------QVYVWK 757 (969)
Q Consensus 704 sgs~----Dg~I~IwD~~~~~~~~~-~~~~~~~V----~sl~fspdg~~LaS--gs~Dg------~I~IWd 757 (969)
+... +..|++||......... ...+...+ ..++|+|||++|+. +..++ .|++||
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 5543 35799999765432221 11122222 27899999997775 45677 466777
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.72 E-value=3.8e-16 Score=191.90 Aligned_cols=275 Identities=12% Similarity=0.104 Sum_probs=183.0
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
..|.+++|+|| ++|+.+. |+.|++||+.+++....... ...+....+.+..........
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~SpdG~~la~~~~------------------ 140 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDT-NEETASLDFSPVGDRVAYVRN------------------ 140 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECC-TTCCTTCEECTTSSEEEEEET------------------
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCC-cccccCCcCCCCCCEEEEEEC------------------
Confidence 57999999999 6555553 59999999999887654332 122333333333221111100
Q ss_pred cccccceeeecC------CCceeEeccCCC--------------CEEEEEecC-CcEEEEEe------------------
Q 002086 532 YVHVPETVFSLS------EKPFCSFIGHLD--------------DVLDLSWSR-SHLLLSSS------------------ 572 (969)
Q Consensus 532 ~~~~~~~v~~~~------~k~~~~l~gH~~--------------~I~~l~fs~-~~~L~Sgs------------------ 572 (969)
....++... ++.......+.. .+.++.|+| +++|++++
T Consensus 141 ---~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 141 ---HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp ---TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred ---CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence 011222222 122222222222 358899999 78899887
Q ss_pred ---------------CCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCc-e
Q 002086 573 ---------------MDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDR-L 628 (969)
Q Consensus 573 ---------------~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~-~ 628 (969)
.+..|++||+.+++..... .|...+.+++|+| ++++|++++.++ .|++||+.++ .
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF 296 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce
Confidence 4578999999999876655 4678899999999 999999888775 8999999998 5
Q ss_pred EEEEec--CCC---CEEEEEEcc--CCCEEEEEeCCCcEEEEEcC-CCceeeeeeeeecccccCCCCCeEE-EEEcCCCC
Q 002086 629 VVDWTD--LHE---MVTAACYTP--DGQNALIGSHKGSCRLYSIE-DSKLHQLNQVDFQTKKKSSTRKITG-FQFSPSNP 699 (969)
Q Consensus 629 ~~~~~~--~~~---~V~sv~fsp--dg~~Lasgs~dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~~~It~-l~fspd~~ 699 (969)
...... ... .+..++|+| +|++++++..++.++||.+. ++..... ...+...+.. ++|+|++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~--------l~~~~~~v~~~~~~spdg~ 368 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ--------VTKGEWEVTNFAGFDPKGT 368 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE--------CCCSSSCEEEEEEECTTSS
T ss_pred eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe--------cCCCCeEEEeeeEEcCCCC
Confidence 444332 222 246789999 99999999999999999876 3332221 1344556766 79999985
Q ss_pred ceEEEEeCCC----cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEcCCC
Q 002086 700 SEVLVTSADS----RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED----SQVYVWKREEH 761 (969)
Q Consensus 700 ~~l~sgs~Dg----~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D----g~I~IWdl~t~ 761 (969)
.+++++..++ .|+.||...... ....+...+.+++|+|||++|+..+.+ +.|++||+.++
T Consensus 369 ~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 369 RLYFESTEASPLERHFYCIDIKGGKT--KDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEEEESSSCTTCBEEEEEETTCCCC--EESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred EEEEEecCCCCceEEEEEEEcCCCCc--eeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 4555555555 677777654322 222345668899999999998877554 46999999874
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=1.5e-14 Score=161.34 Aligned_cols=201 Identities=14% Similarity=0.156 Sum_probs=140.0
Q ss_pred CCCCEEEEEecC-CcEEEEEeC---CCcEEEEECCCCcEE--EE-eecCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeC
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSM---DKTVRLWDMETKSCL--KL-FAHNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSI 624 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~---DgtV~IWDl~t~~~i--~~-~~h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl 624 (969)
+...+..++|+| ++ |++++. ++.|.+||+.++... .. ..+...+..++|+| ++++|++++ .++.|.+|++
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 445667899999 55 665554 689999999877643 33 35788899999999 899888887 7899999999
Q ss_pred C-Cce--EEEEecCC----------CCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeeecccccCCCCCeE
Q 002086 625 S-DRL--VVDWTDLH----------EMVTAACYTPDGQNALIGSHKGSCRLYSIE-DSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 625 ~-~~~--~~~~~~~~----------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
. ++. .+...... ..+.+++|+|+|+++++...++.|.+|++. ++++....... ......+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~g~~p~ 190 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-----MEAGFGPR 190 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-----CCTTCCEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-----cCCCCCCc
Confidence 6 333 22222221 248899999999966666678899999998 45443222111 12234678
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCc--ceE--EEEeecCC------CCeEEEEEeCCCCEE-EEEeCCCcEEEEEcC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLD--IVH--KFRGFRNT------SSQISAAFNADGKYI-ISASEDSQVYVWKRE 759 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~--~~~~~~~~------~~V~sl~fspdg~~L-aSgs~Dg~I~IWdl~ 759 (969)
.++|+|++..++++...++.|++|+... ... ........ ..+..++|+|||++| ++...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999844555567789999998542 211 11111111 347889999999987 555668999999997
Q ss_pred C
Q 002086 760 E 760 (969)
Q Consensus 760 t 760 (969)
.
T Consensus 271 ~ 271 (347)
T 3hfq_A 271 A 271 (347)
T ss_dssp G
T ss_pred C
Confidence 4
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.67 E-value=5e-15 Score=167.37 Aligned_cols=248 Identities=12% Similarity=0.065 Sum_probs=166.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecc-cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ-ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~-tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+...+..++|+|||++|++++.+ .|.+|++. ++++.....
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-------------------------------------- 78 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-------------------------------------- 78 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--------------------------------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--------------------------------------
Confidence 44578899999999999999988 99999997 666543211
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE--EEEEe-------------CCCcEEEEECC-CCcEEEEe
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL--LLSSS-------------MDKTVRLWDME-TKSCLKLF 591 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~--L~Sgs-------------~DgtV~IWDl~-t~~~i~~~ 591 (969)
...+ +.+.+++|+| +++ ++++. .++++.+|++. .++....+
T Consensus 79 ---------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~ 136 (365)
T 1jof_A 79 ---------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV 136 (365)
T ss_dssp ---------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred ---------------------eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE
Confidence 0000 1122366777 552 44443 68999999997 46655433
Q ss_pred e-----cCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCC-CceEEE--Eec---CCCCEEEEEEccCCCEEEEEeC-CC
Q 002086 592 A-----HNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSIS-DRLVVD--WTD---LHEMVTAACYTPDGQNALIGSH-KG 658 (969)
Q Consensus 592 ~-----h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~-~~~~~~--~~~---~~~~V~sv~fspdg~~Lasgs~-dg 658 (969)
. +...+.+++|+| ++++|+++.. ++.|++||+. ++++.. ... +...+..++|+|+|+++++++. ++
T Consensus 137 ~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 137 QNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp EEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred eeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 2 567899999999 8988887664 6899999998 676432 221 2466899999999999988775 68
Q ss_pred cEEEEEcC--CCceee-eeeee-ecccccCCCC------CeEEEE-EcCCCCceEEEEeC-CC-----cEEEEeCC-cce
Q 002086 659 SCRLYSIE--DSKLHQ-LNQVD-FQTKKKSSTR------KITGFQ-FSPSNPSEVLVTSA-DS-----RIRILDGL-DIV 720 (969)
Q Consensus 659 ~I~IwDl~--~~~~~~-~~~~~-~~~~~~~h~~------~It~l~-fspd~~~~l~sgs~-Dg-----~I~IwD~~-~~~ 720 (969)
.|.+|++. ++++.. ...+. +.....++.. .+..++ |+|++ ++|+++.. +. .|.+|++. ...
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 99999875 454321 01111 1000011222 588999 99998 56666543 33 89999964 222
Q ss_pred EE--EE-eecCCCCeEEEEEeC---CCCEEEEEeCC-CcEEEEEcCC
Q 002086 721 HK--FR-GFRNTSSQISAAFNA---DGKYIISASED-SQVYVWKREE 760 (969)
Q Consensus 721 ~~--~~-~~~~~~~V~sl~fsp---dg~~LaSgs~D-g~I~IWdl~t 760 (969)
.. .. ..........++|+| ||++|++++.+ +.|.||+++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 11 11 111233456789999 89999999875 8999999976
No 157
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=1.9e-13 Score=148.15 Aligned_cols=246 Identities=7% Similarity=0.118 Sum_probs=176.7
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|-..+.+|+++++|+++++...++.|.+||.. ++.+..+....
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~---------------------------------- 70 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG---------------------------------- 70 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS----------------------------------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC----------------------------------
Confidence 4567789999999999999998889999999987 44433221000
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEec-CCcEEEEEe-C-CCcEEEEECCCCcEEEEee--cCCCeEEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS-RSHLLLSSS-M-DKTVRLWDMETKSCLKLFA--HNDYVTCIQF 602 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-~~~~L~Sgs-~-DgtV~IWDl~t~~~i~~~~--h~~~V~sv~f 602 (969)
...+|...+.++++. ++..|+.+. . ++.|.+|| .+++.+..+. +...+.++++
T Consensus 71 ---------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~ 128 (286)
T 1q7f_A 71 ---------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV 128 (286)
T ss_dssp ---------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred ---------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence 001345567889994 544444444 3 89999999 6677777663 4467899999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
++ +++++++...++.|.+||........+. .....+..++++++|+++++...++.|++||...... ....
T Consensus 129 ~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~----- 201 (286)
T 1q7f_A 129 DN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL-RQIG----- 201 (286)
T ss_dssp CT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE-EEES-----
T ss_pred eC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE-EEEc-----
Confidence 99 8888888778899999997654433332 2345689999999999877778899999999854322 1110
Q ss_pred cccCCCCCeEEEEEcCCCCceEEEEeCCC-cEEEEeCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 681 KKKSSTRKITGFQFSPSNPSEVLVTSADS-RIRILDGLD-IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~~~~l~sgs~Dg-~I~IwD~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..++...+..+++++++ .++++...++ .|.+||... ....+........+.+++++|+|+++++ +.|+.|++|++
T Consensus 202 -~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 202 -GEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp -CTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred -cCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 12234678999999988 6777777775 999999543 3334443333345779999999987777 67999999998
Q ss_pred CC
Q 002086 759 EE 760 (969)
Q Consensus 759 ~t 760 (969)
..
T Consensus 279 ~~ 280 (286)
T 1q7f_A 279 VQ 280 (286)
T ss_dssp SC
T ss_pred cc
Confidence 75
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.64 E-value=6.8e-15 Score=176.80 Aligned_cols=183 Identities=10% Similarity=0.056 Sum_probs=142.1
Q ss_pred EEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC----CeEEEEeCCCceEEEE
Q 002086 559 DLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD----AKVRIWSISDRLVVDW 632 (969)
Q Consensus 559 ~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D----g~I~IWDl~~~~~~~~ 632 (969)
..+|++ +..+++.+.++.+.+||+.++++.....+.. .+++|+| ++++|++++.+ +.|++||+.+++...+
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l 190 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 190 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence 345555 4444555555555699999998877776555 8999999 99999988877 7899999999988888
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE--------EcCCCCceE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ--------FSPSNPSEV 702 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~--------fspd~~~~l 702 (969)
..+...+..++|+|||+.|+++..++ .|++||+.+++.. .. ..+...+..+. |+|++ .++
T Consensus 191 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~spdg-~~~ 260 (582)
T 3o4h_A 191 DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--------ELPSKDFSSYRPTAITWLGYLPDG-RLA 260 (582)
T ss_dssp CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--------CCSCSHHHHHCCSEEEEEEECTTS-CEE
T ss_pred ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--------cCCCcChhhhhhccccceeEcCCC-cEE
Confidence 88888899999999999999888888 8999999988764 21 33444455555 99999 899
Q ss_pred EEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc---EEEEEcCC
Q 002086 703 LVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ---VYVWKREE 760 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~---I~IWdl~t 760 (969)
++++.++.+++|+. ... .. .....+.+++|+ +++++++++.+.. |++|+..+
T Consensus 261 ~~~~~~g~~~l~~~--g~~-~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARREGRSAVFID--GER-VE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEET--TEE-EC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCcEEEEEE--CCe-ec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999998 221 11 233568899999 9999999888754 77777653
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.63 E-value=1.9e-14 Score=162.54 Aligned_cols=254 Identities=13% Similarity=0.104 Sum_probs=173.3
Q ss_pred ccccceeeeEecccccCEEE-----EEEeCCCCEEEEEeC-CCc--EEEEecccceEEEeecCCccCcccccccCCCCCc
Q 002086 437 DLSALHLCQEIQAHEGSIWT-----IKFSLDARFLASAGE-DRV--IHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKAS 508 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~-----l~fSpDg~~LaTgs~-Dgt--VrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~ 508 (969)
+..+...+..|..|.+.+.. .+|+|||++|+.++. ++. |.+||+.+++.....
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt------------------- 76 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT------------------- 76 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-------------------
T ss_pred cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-------------------
Confidence 33445556677788877776 899999999999887 674 888888887765421
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC 587 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~ 587 (969)
.+|...+..+.|+| ++.|+.++.++.|++||+.+++.
T Consensus 77 ------------------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 77 ------------------------------------------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp ------------------------------------------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred ------------------------------------------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 12333333467999 78999999999999999999998
Q ss_pred EEEee-cCCCeEEEE--EecCCCCEEEEE----------------------ECCCeEEEEeCCCceEEEEecCCCCEEEE
Q 002086 588 LKLFA-HNDYVTCIQ--FNPMDDDYFISG----------------------SLDAKVRIWSISDRLVVDWTDLHEMVTAA 642 (969)
Q Consensus 588 i~~~~-h~~~V~sv~--fsp~~~~~L~sg----------------------s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv 642 (969)
...+. +...+.... +++ ++.+++.. ..+..|++||+.+++...+..+...+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 193 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHP 193 (388)
T ss_dssp EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEE
T ss_pred eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcccccc
Confidence 77664 344444444 377 78877643 24478999999999888887777889999
Q ss_pred EEcc-CCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeecccccCCC-CCeEEEEEcCCCCceEEEEeCCC----c
Q 002086 643 CYTP-DGQNALIGSHK------GSCRLYSIEDSKLHQLNQVDFQTKKKSST-RKITGFQFSPSNPSEVLVTSADS----R 710 (969)
Q Consensus 643 ~fsp-dg~~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~-~~It~l~fspd~~~~l~sgs~Dg----~ 710 (969)
+|+| +|+.|+..... ..|.++|+.+....... .... ..+..+.|+|++..+++++..++ .
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (388)
T 3pe7_A 194 IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK--------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRF 265 (388)
T ss_dssp EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC--------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee--------eCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence 9999 99999877753 37888888766543221 1111 35778899999944444444322 3
Q ss_pred EEEEeCCcceE-EEEeecCCCC----eEEEEEeCCCCEEEEE---------eCCCcEEEEEcCC
Q 002086 711 IRILDGLDIVH-KFRGFRNTSS----QISAAFNADGKYIISA---------SEDSQVYVWKREE 760 (969)
Q Consensus 711 I~IwD~~~~~~-~~~~~~~~~~----V~sl~fspdg~~LaSg---------s~Dg~I~IWdl~t 760 (969)
|++||...... .+........ ...+.|+|||++|+.. ..+..|++||+.+
T Consensus 266 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 266 IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 99999765432 2211111000 1123799999988854 4566899999987
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=8.8e-16 Score=189.16 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=164.6
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 456 TIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 456 ~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
+++|+|||++++++ .|++|++||+.+++....+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~--------------------------------------------- 53 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILS--------------------------------------------- 53 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEEC---------------------------------------------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEc---------------------------------------------
Confidence 78999999766654 69999999999877654221
Q ss_pred cceeeecCCCceeEeccCCC---CEEEEEecC-CcEEEEEeC---------CCcEEEEECCCCcEEEEeecCCCeEEEEE
Q 002086 536 PETVFSLSEKPFCSFIGHLD---DVLDLSWSR-SHLLLSSSM---------DKTVRLWDMETKSCLKLFAHNDYVTCIQF 602 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~---~I~~l~fs~-~~~L~Sgs~---------DgtV~IWDl~t~~~i~~~~h~~~V~sv~f 602 (969)
+|.. .|.+++|+| +++|++++. +++|++||+.+++.+........+..++|
T Consensus 54 ----------------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~ 117 (719)
T 1z68_A 54 ----------------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCW 117 (719)
T ss_dssp ----------------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEE
T ss_pred ----------------cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceE
Confidence 2221 477899999 788888876 79999999999987321222467899999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecC--CCCE-----------------EEEEEccCCCEEEEEeCCC-----
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL--HEMV-----------------TAACYTPDGQNALIGSHKG----- 658 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~--~~~V-----------------~sv~fspdg~~Lasgs~dg----- 658 (969)
+| +++.|+.+. ++.|++||+.+++...+... ...| .+++|+|||++|++++.|.
T Consensus 118 SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~ 195 (719)
T 1z68_A 118 SP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPV 195 (719)
T ss_dssp CS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCE
T ss_pred CC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCce
Confidence 99 999999886 78999999998876654322 1222 4899999999999987652
Q ss_pred -----------------------------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-
Q 002086 659 -----------------------------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD- 708 (969)
Q Consensus 659 -----------------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D- 708 (969)
.|++||+.+++......+........+...+..++|+|++ .++++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~ 274 (719)
T 1z68_A 196 IAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRV 274 (719)
T ss_dssp EEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESS
T ss_pred EEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccc
Confidence 7889999877642001111111123577789999999996 666664332
Q ss_pred ---CcEEEEe----CCcceEEEEe----ecCCCCeE-----EEEEeCCCCEEEE--EeCCC--cEEEEEcCCC
Q 002086 709 ---SRIRILD----GLDIVHKFRG----FRNTSSQI-----SAAFNADGKYIIS--ASEDS--QVYVWKREEH 761 (969)
Q Consensus 709 ---g~I~IwD----~~~~~~~~~~----~~~~~~V~-----sl~fspdg~~LaS--gs~Dg--~I~IWdl~t~ 761 (969)
..|++|| .......... ..+...+. .+.|+|||+.|+. +..+| .|++|++.++
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred cCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 2488899 5443211111 12334444 7899999996544 54566 4666776653
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.62 E-value=1.1e-14 Score=161.14 Aligned_cols=239 Identities=10% Similarity=0.034 Sum_probs=165.2
Q ss_pred EEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC--CeEEEEEecCCCCEE-EEEECCCeEEEEeCCCceEEEEecC
Q 002086 560 LSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND--YVTCIQFNPMDDDYF-ISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 560 l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~--~V~sv~fsp~~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
+++++ +.++++++.+++|++||+.+++.+..+.... .+..++|+| +++++ +++..++.|.+||+.+++.......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45666 6788999999999999999999988876544 788999999 77755 4555789999999999887765543
Q ss_pred CC-------CEEEEEEccCCCEEEEEeCC------------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 636 HE-------MVTAACYTPDGQNALIGSHK------------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 636 ~~-------~V~sv~fspdg~~Lasgs~d------------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.. .+..++|+|+|++|++++.+ +.|.+||+.+++....... ..+...+.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAAD 157 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------EECCSSCCCEEECT
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee------ccCCCcccceeECC
Confidence 22 27789999999999998865 8999999987553221111 11233588899999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceEEEEeecC------------------------------------------------
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVHKFRGFRN------------------------------------------------ 728 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~------------------------------------------------ 728 (969)
++ . +++++ +.|++||.............
T Consensus 158 dg-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 158 DG-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TS-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CC-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 98 4 55544 34999996543222111100
Q ss_pred --------------------CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEE
Q 002086 729 --------------------TSSQISAAFNA-DGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSV 787 (969)
Q Consensus 729 --------------------~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~ 787 (969)
...+..++|+| ||++|+++ ++.|++||+.++ +.......
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~------~~~~~~~~------------ 293 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR------KLIKAANL------------ 293 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT------EEEEEEEC------------
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC------eEEEEEcC------------
Confidence 11345677889 99998888 889999998873 21111100
Q ss_pred eecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCC
Q 002086 788 AIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPP 855 (969)
Q Consensus 788 ~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~p 855 (969)
+..+...+++|++..++..+.+..+..|...++.....+..|
T Consensus 294 --------------------------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 294 --------------------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp --------------------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred --------------------------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 011223456888888777777788999988777655554443
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=7.3e-15 Score=182.18 Aligned_cols=249 Identities=10% Similarity=0.094 Sum_probs=167.9
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
....++.|+|||++|+++ |++|++||+.+++....+.++..
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------------------------------- 57 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------------------------------- 57 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT-------------------------------------
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh-------------------------------------
Confidence 346689999999999986 99999999998876554332210
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---------CcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---------KTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---------gtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
..+......+.|+| +++|+.++.+ +.+.+||+.++++.....|...+..++
T Consensus 58 -------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 118 (740)
T 4a5s_A 58 -------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118 (740)
T ss_dssp -------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEE
T ss_pred -------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeE
Confidence 01112234578899 7888888876 566799999999877667888999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CCE-----------------EEEEEccCCCEEEEEeCCC----
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EMV-----------------TAACYTPDGQNALIGSHKG---- 658 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~V-----------------~sv~fspdg~~Lasgs~dg---- 658 (969)
|+| +++.|+.+. |+.|++||+.++....+.... ..+ ..+.|+|||+.|+.++.|.
T Consensus 119 ~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 119 WSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 999 999998885 689999999988766543322 222 2489999999999875332
Q ss_pred --------------------------------cEEEEEcCC---CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 659 --------------------------------SCRLYSIED---SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 659 --------------------------------~I~IwDl~~---~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
.|++||+.+ ++......+........+...+..++|+|++ +.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~ 275 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISL 275 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEE
Confidence 467777776 5211111111111111366778999999998 5555
Q ss_pred EEeC----CCcEEEEeCCcce--------EEEEeecCCCCe-----EEEEEeCCCCEEE-EEeC-CC--cEEEEEcCCC
Q 002086 704 VTSA----DSRIRILDGLDIV--------HKFRGFRNTSSQ-----ISAAFNADGKYII-SASE-DS--QVYVWKREEH 761 (969)
Q Consensus 704 sgs~----Dg~I~IwD~~~~~--------~~~~~~~~~~~V-----~sl~fspdg~~La-Sgs~-Dg--~I~IWdl~t~ 761 (969)
.... +..|++||..... ..+....+...+ ....|+|||+.|+ ..+. +| .|++|++.++
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 4422 3469999954322 222112233333 3678999999877 6654 33 5888888764
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.60 E-value=9e-14 Score=157.01 Aligned_cols=259 Identities=14% Similarity=0.078 Sum_probs=168.6
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++...+..+...+|...+.++.|+|||++|+.++.++.|++||+.+++......
T Consensus 66 d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-------------------------- 119 (388)
T 3pe7_A 66 DLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-------------------------- 119 (388)
T ss_dssp ETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--------------------------
T ss_pred eCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee--------------------------
Confidence 455555666667777777788999999999999999999999999877654322
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEE--ecC-CcEEEE----------------------E
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLS--WSR-SHLLLS----------------------S 571 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~--fs~-~~~L~S----------------------g 571 (969)
.+...+.... +++ +.+++. .
T Consensus 120 -----------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 120 -----------------------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp -----------------------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred -----------------------------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 1112222122 234 333332 2
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEEEEecCC--CCEEEEE
Q 002086 572 SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVVDWTDLH--EMVTAAC 643 (969)
Q Consensus 572 s~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~~~~~~~--~~V~sv~ 643 (969)
..+..|.+||+.+++......+...+..++|+|.++..|+.+..+ ..|.++|+.++....+..+. ..+..++
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence 345789999999999888888888999999998556777766653 37888998887766666555 3578899
Q ss_pred EccCCCEEEEEeC-CC----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--------eCCCc
Q 002086 644 YTPDGQNALIGSH-KG----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--------SADSR 710 (969)
Q Consensus 644 fspdg~~Lasgs~-dg----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--------s~Dg~ 710 (969)
|+|+|+.|+..+. ++ .|++||+.+++............... ....+.|+|++..++++. ..+..
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS---NYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE---CTTSSEEEEEECCC------------CCCCE
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee---cCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 9999997765443 22 39999999887543322210000000 011126899984444333 45678
Q ss_pred EEEEeCCcceE-EEEeecC---------CCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC
Q 002086 711 IRILDGLDIVH-KFRGFRN---------TSSQISAAFNADGKYIISAS-EDSQVYVWKRE 759 (969)
Q Consensus 711 I~IwD~~~~~~-~~~~~~~---------~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~ 759 (969)
|++||...... .+..+.. ...+..++|+|||++|+..+ .+|...||.++
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 322 LYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 99999765332 2322221 00367889999999888666 46776666654
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.58 E-value=6.1e-13 Score=148.10 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=144.0
Q ss_pred cCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc-EEEEee----------cCCCeEEEEEecCCCCEEEEEE-CCCe
Q 002086 552 GHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS-CLKLFA----------HNDYVTCIQFNPMDDDYFISGS-LDAK 618 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~-~i~~~~----------h~~~V~sv~fsp~~~~~L~sgs-~Dg~ 618 (969)
++......+++++ ++++++...++.|++||..... .+..++ +......|+|+|.++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 3445788999998 7788888889999999987553 444442 3346899999985567777776 6899
Q ss_pred EEEEeCCCceEEEEecC-----------CCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 619 VRIWSISDRLVVDWTDL-----------HEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~-----------~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
|++||. ++..+..... ...+..++++|+ +.++++...++.|++|+..+++....... ..+.
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~------~~~~ 240 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH------ASFG 240 (329)
T ss_dssp EEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC------TTTT
T ss_pred EEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec------cccC
Confidence 999995 4554444321 134899999998 67777777889999999987776543221 3455
Q ss_pred CCeEEEEEcCCCCceEEEE-------eCCCcEEEEeCCcceEEEEe---ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 687 RKITGFQFSPSNPSEVLVT-------SADSRIRILDGLDIVHKFRG---FRNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sg-------s~Dg~I~IwD~~~~~~~~~~---~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
..+..++|+| + ..+.+. ..+..|++|+.......... ..+......++++|+|.++++...++.|++|
T Consensus 241 ~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 RNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp TCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 6788999999 3 333333 23458999996654333222 2345568899999999888888899999999
Q ss_pred EcCC
Q 002086 757 KREE 760 (969)
Q Consensus 757 dl~t 760 (969)
++..
T Consensus 319 ~~~~ 322 (329)
T 3fvz_A 319 TLTE 322 (329)
T ss_dssp EEEE
T ss_pred eCCc
Confidence 9875
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=176.73 Aligned_cols=255 Identities=9% Similarity=0.072 Sum_probs=171.8
Q ss_pred cccccceeeeEeccccc---CEEEEEEeCCCCEEEEEeC---------CCcEEEEecccceEEEeecCCccCcccccccC
Q 002086 436 KDLSALHLCQEIQAHEG---SIWTIKFSLDARFLASAGE---------DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNS 503 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~---~I~~l~fSpDg~~LaTgs~---------DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~ 503 (969)
+++...+....+.+|.. .|.+++|||||++||+++. |+.|++||+.+++.+...
T Consensus 41 ~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-------------- 106 (719)
T 1z68_A 41 YNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-------------- 106 (719)
T ss_dssp EESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--------------
T ss_pred EEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce--------------
Confidence 35555556666666655 4999999999999999876 789999999987652100
Q ss_pred CCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEEC
Q 002086 504 SDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDM 582 (969)
Q Consensus 504 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl 582 (969)
.+ ...+..++|+| ++.|+.+. ++.|++||+
T Consensus 107 ---------------------------------------------~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 107 ---------------------------------------------EL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp ---------------------------------------------CC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred ---------------------------------------------ec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 00 12466799999 77888775 789999999
Q ss_pred CCCcEEEEe--ecCCCe-----------------EEEEEecCCCCEEEEEECCC--------------------------
Q 002086 583 ETKSCLKLF--AHNDYV-----------------TCIQFNPMDDDYFISGSLDA-------------------------- 617 (969)
Q Consensus 583 ~t~~~i~~~--~h~~~V-----------------~sv~fsp~~~~~L~sgs~Dg-------------------------- 617 (969)
.++++.... ++...| .+++|+| ++++|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 998876543 333322 4899999 999999988652
Q ss_pred --------eEEEEeCCCceEE---EE------ecCCCCEEEEEEccCCCEEEEEeCCC----cEEEEE----cCCCceee
Q 002086 618 --------KVRIWSISDRLVV---DW------TDLHEMVTAACYTPDGQNALIGSHKG----SCRLYS----IEDSKLHQ 672 (969)
Q Consensus 618 --------~I~IWDl~~~~~~---~~------~~~~~~V~sv~fspdg~~Lasgs~dg----~I~IwD----l~~~~~~~ 672 (969)
.|++||+.+++.. .+ ..+...+..++|+||++++++....+ .|.+|| +.+++...
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7899999987642 22 23566789999999987777644332 488899 76665432
Q ss_pred eeeeeecccccCCCCCeE-----EEEEcCCCCceEE-EEeCCC--cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEE
Q 002086 673 LNQVDFQTKKKSSTRKIT-----GFQFSPSNPSEVL-VTSADS--RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYI 744 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It-----~l~fspd~~~~l~-sgs~Dg--~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~L 744 (969)
... .....+...+. .+.|+|++..+++ +...++ .|++||...... .....+...+..+.++ +++.|
T Consensus 297 ~~~----~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i 370 (719)
T 1z68_A 297 TQE----HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSL 370 (719)
T ss_dssp GGE----EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEE
T ss_pred EEe----cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEE
Confidence 210 00013344444 7889999854444 344555 467777544321 1222234457777777 88887
Q ss_pred EEEeCC-----CcEEEEEcCC
Q 002086 745 ISASED-----SQVYVWKREE 760 (969)
Q Consensus 745 aSgs~D-----g~I~IWdl~t 760 (969)
+..+.+ +.++||.+..
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 371 FYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEecCCCCCceEEEEEEeC
Confidence 776665 8899998764
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.56 E-value=1.2e-12 Score=146.84 Aligned_cols=202 Identities=11% Similarity=0.100 Sum_probs=134.0
Q ss_pred CCCCEEEEEecC-CcEEEEEeCC----CcEEEEECCC--CcEEE--Ee-ecCCCeEEEEEecCCCCEEEEEE-CCCeEEE
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMD----KTVRLWDMET--KSCLK--LF-AHNDYVTCIQFNPMDDDYFISGS-LDAKVRI 621 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~D----gtV~IWDl~t--~~~i~--~~-~h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~I 621 (969)
+...+..++|+| +++|++++.+ +.|.+|++.. ++... .. .+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 556677799999 7888888876 8999998875 44332 22 24556777777 566666665 6889999
Q ss_pred EeCCCceEE----EEecC-----------CCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCce------eeeeeeeec
Q 002086 622 WSISDRLVV----DWTDL-----------HEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKL------HQLNQVDFQ 679 (969)
Q Consensus 622 WDl~~~~~~----~~~~~-----------~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~------~~~~~~~~~ 679 (969)
|++.....+ ....+ ...+.+++|+|+|++|++++ .++.|.+|++..... ..... ...
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-~~~ 203 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-TPE 203 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-EEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-ccc
Confidence 999753211 11111 12358899999999776655 588999999875441 11000 000
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcceE--EEEe---ecCCCCeEEEEEeCCCCEEEEEeCC--C
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDIVH--KFRG---FRNTSSQISAAFNADGKYIISASED--S 751 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~~~--~~~~---~~~~~~V~sl~fspdg~~LaSgs~D--g 751 (969)
.........+..++|+|++ .++++++ .++.|.+|+...... .... ..+......++|+|||++|+++..+ +
T Consensus 204 ~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 0112344567899999998 5555555 789999999653221 1111 1122346789999999999776665 8
Q ss_pred cEEEEEcC
Q 002086 752 QVYVWKRE 759 (969)
Q Consensus 752 ~I~IWdl~ 759 (969)
.|.+|+++
T Consensus 283 ~i~v~~~~ 290 (361)
T 3scy_A 283 GVAIFKVD 290 (361)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 99999996
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.56 E-value=7e-13 Score=150.02 Aligned_cols=264 Identities=9% Similarity=0.055 Sum_probs=176.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK 506 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~ 506 (969)
|..+++++.++..+..+ .++|+|||++|+++. .+++|.+||..+++.+..+.....
T Consensus 37 D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~------------ 102 (361)
T 2oiz_A 37 DYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK------------ 102 (361)
T ss_dssp ETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT------------
T ss_pred ECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc------------
Confidence 55566667778877776 999999999999886 367899999998877664321000
Q ss_pred CccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEECC
Q 002086 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWDME 583 (969)
Q Consensus 507 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWDl~ 583 (969)
. ..+......++++| +++|+++.. +++|.+||+.
T Consensus 103 ------------------------------------------~-~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~ 139 (361)
T 2oiz_A 103 ------------------------------------------R-VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA 139 (361)
T ss_dssp ------------------------------------------B-CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT
T ss_pred ------------------------------------------c-cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC
Confidence 0 00123345688998 788888764 6899999999
Q ss_pred CCcEEEE-eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEE------ecCCCCEEEEEEccCCCEEEEEe
Q 002086 584 TKSCLKL-FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDW------TDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 584 t~~~i~~-~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~------~~~~~~V~sv~fspdg~~Lasgs 655 (969)
+++.+.. +.+... ..+.+.|.....+++.+.||.+.+|++.. +++... +........+.+++++..++..+
T Consensus 140 ~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (361)
T 2oiz_A 140 KGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS 218 (361)
T ss_dssp TTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB
T ss_pred CCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe
Confidence 9999888 655433 33667774447889999999999999865 554411 11111122344567788888888
Q ss_pred CCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe----------CCCcEEEEeCCcceE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS----------ADSRIRILDGLDIVH 721 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs----------~Dg~I~IwD~~~~~~ 721 (969)
.++.|.++|+..........+..... ..........++|+|++...+++.. ....|.+||..+...
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~ 298 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR 298 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE
T ss_pred CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE
Confidence 89999999997655332221111100 0000111123689999854444443 135799999876654
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
......+. ...++|+|||++|++++. +.|.+||..++
T Consensus 299 v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 299 VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 44433333 889999999999999887 99999999884
No 168
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=5.4e-12 Score=139.63 Aligned_cols=245 Identities=9% Similarity=0.048 Sum_probs=167.9
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
....+.+|...+.+++|+++|++++++..++.|.+||..+++....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~---------------------------------- 81 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP---------------------------------- 81 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE----------------------------------
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE----------------------------------
Confidence 4456777888899999999999888888999999999887654331
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC----CcEEEEECCCCcEEEEe---ecC
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD----KTVRLWDMETKSCLKLF---AHN 594 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D----gtV~IWDl~t~~~i~~~---~h~ 594 (969)
+..+...+.++++++ +.++++...+ +.|.+||..++.....+ .+.
T Consensus 82 ---------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 82 ---------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp ---------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred ---------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 112446789999998 5666666655 68999999988765444 245
Q ss_pred CCeEEEEEecCCCCEEEEEEC------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSL------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIED 667 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~ 667 (969)
..+.+++++| ++.++++... .+.|..||..++++..+......+..++|+|+|+.|++ .+.++.|.+||+..
T Consensus 135 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 6799999999 8887776654 35677777776665554444456889999999986655 45678999999964
Q ss_pred -CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecC----CCCeEEEEEeCCC
Q 002086 668 -SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRN----TSSQISAAFNADG 741 (969)
Q Consensus 668 -~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~----~~~V~sl~fspdg 741 (969)
+................ ...+..+++++++ .++++...++.|.+||.... ...+..... ...+.+++|+||+
T Consensus 214 ~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTG-HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp TSSSEEEEEEEEEEECCS-SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CCcCcccccceEEEecCC-CCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 32221110000000111 1467889999987 66666677899999997432 222222111 1157899999998
Q ss_pred CEEEEEeCCC
Q 002086 742 KYIISASEDS 751 (969)
Q Consensus 742 ~~LaSgs~Dg 751 (969)
+.|+.++.++
T Consensus 292 ~~L~v~~~~g 301 (333)
T 2dg1_A 292 NQLIICSNDI 301 (333)
T ss_dssp CEEEEEEECG
T ss_pred CEEEEEeCcc
Confidence 7777666553
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.52 E-value=1.6e-13 Score=154.73 Aligned_cols=249 Identities=12% Similarity=0.121 Sum_probs=164.8
Q ss_pred cccceeeeEecccccC-----EEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCcc
Q 002086 438 LSALHLCQEIQAHEGS-----IWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASS 509 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~-----I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~ 509 (969)
..+...+..|..+... +.+++|+|||++|+.+... ..|.+||+.+++......
T Consensus 17 ~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~------------------- 77 (396)
T 3c5m_A 17 SDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE------------------- 77 (396)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-------------------
T ss_pred CCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-------------------
Confidence 3344444555554433 7889999999998877543 468888988776543211
Q ss_pred CCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE
Q 002086 510 LDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL 588 (969)
Q Consensus 510 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i 588 (969)
++......+.|+| ++.|+.++.++.|++||+.+++..
T Consensus 78 ------------------------------------------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 78 ------------------------------------------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp ------------------------------------------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred ------------------------------------------CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 0111112357888 789999999999999999999877
Q ss_pred EEee-cCCCeEE-------------------EEEecCCCCEEEEE-----ECCCeEEEEeCCCceEEEEecCCCCEEEEE
Q 002086 589 KLFA-HNDYVTC-------------------IQFNPMDDDYFISG-----SLDAKVRIWSISDRLVVDWTDLHEMVTAAC 643 (969)
Q Consensus 589 ~~~~-h~~~V~s-------------------v~fsp~~~~~L~sg-----s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~ 643 (969)
.... +...... +.|+| +++.++.+ ..+..|++||+.+++...+..+...+..+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI 194 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence 6664 3332222 24455 55554433 356789999999988777777777899999
Q ss_pred Ecc-CCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeecccccCC-CCCeEEEEEcCCCCceEEEEeCC-----Cc
Q 002086 644 YTP-DGQNALIGSHK------GSCRLYSIEDSKLHQLNQVDFQTKKKSS-TRKITGFQFSPSNPSEVLVTSAD-----SR 710 (969)
Q Consensus 644 fsp-dg~~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~~~~~h-~~~It~l~fspd~~~~l~sgs~D-----g~ 710 (969)
|+| ++..|+..+.+ ..|.+||+.+++..... ... ...+..+.|+|++ ..|+.++.+ +.
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK--------EHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRV 265 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--------CCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEE
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--------ccCCCccccceEECCCC-CEEEEEecCCCCccce
Confidence 999 78877776543 36888898765532211 111 2357889999998 555554433 44
Q ss_pred EEEEeCCcceEE-EEeecCCCCeEEEEEeC-CCCEEEEEe----------------CCCcEEEEEcCCC
Q 002086 711 IRILDGLDIVHK-FRGFRNTSSQISAAFNA-DGKYIISAS----------------EDSQVYVWKREEH 761 (969)
Q Consensus 711 I~IwD~~~~~~~-~~~~~~~~~V~sl~fsp-dg~~LaSgs----------------~Dg~I~IWdl~t~ 761 (969)
|++||....... +.... ... +.|+| ||++|++++ .++.|++||+.++
T Consensus 266 l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 999997653322 22111 123 89999 999988765 3478999999874
No 170
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.51 E-value=8.3e-12 Score=136.09 Aligned_cols=241 Identities=9% Similarity=0.030 Sum_probs=170.6
Q ss_pred eeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
.+..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ..
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---------------------------------- 62 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---------------------------------- 62 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE----------------------------------
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE----------------------------------
Confidence 3445666777889999999998 8888888999999998765 22
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-----cCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-----HND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-----h~~ 595 (969)
.+..+...+.++++++ +.++++...++.|.+||..+++...... ...
T Consensus 63 ---------------------------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 115 (296)
T 3e5z_A 63 ---------------------------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLN 115 (296)
T ss_dssp ---------------------------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECC
T ss_pred ---------------------------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCC
Confidence 2223456688999998 6666666667999999998888765542 224
Q ss_pred CeEEEEEecCCCCEEEEE----E-------------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002086 596 YVTCIQFNPMDDDYFISG----S-------------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG 658 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sg----s-------------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg 658 (969)
.+..++++| +++++++. . ..+.|..++.. +++.........+..++|+|+++.+++.+.++
T Consensus 116 ~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~ 193 (296)
T 3e5z_A 116 SPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDN 193 (296)
T ss_dssp CCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTT
T ss_pred CCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCC
Confidence 567899999 88888873 2 13467777766 66666666667789999999999997777889
Q ss_pred cEEEEEcC-CCce-eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEE
Q 002086 659 SCRLYSIE-DSKL-HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAA 736 (969)
Q Consensus 659 ~I~IwDl~-~~~~-~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~ 736 (969)
.|.+|++. ++.+ ..... + ..+...+.++++++++ .++++. ++.|.+|+..... ......+.. +.+++
T Consensus 194 ~i~~~~~~~~g~~~~~~~~--~----~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~-~~~~~~~~~-~~~~~ 262 (296)
T 3e5z_A 194 ATHRYCLNARGETEYQGVH--F----TVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDE-LGRVLTPQT-TSNLC 262 (296)
T ss_dssp EEEEEEECSSSCEEEEEEE--E----CCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCE-EEEEECSSC-CCEEE
T ss_pred eEEEEEECCCCcCcCCCeE--e----eCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCE-EEEEECCCC-ceeEE
Confidence 99999997 4443 11111 1 1134456789999988 444444 8899999965322 112222333 78899
Q ss_pred E-eCCCCEEEEEeCCCcEEEEEcCC
Q 002086 737 F-NADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 737 f-spdg~~LaSgs~Dg~I~IWdl~t 760 (969)
| .|+++.|++++.+ .|..++.++
T Consensus 263 f~~~d~~~L~v~t~~-~l~~~~~~~ 286 (296)
T 3e5z_A 263 FGGPEGRTLYMTVST-EFWSIETNV 286 (296)
T ss_dssp EESTTSCEEEEEETT-EEEEEECSC
T ss_pred EECCCCCEEEEEcCC-eEEEEEccc
Confidence 9 5899999998876 455556655
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.51 E-value=1.8e-12 Score=146.29 Aligned_cols=198 Identities=9% Similarity=0.094 Sum_probs=138.1
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECC-CCcEEEEeecC--CCeEEEEEecCCCCE--EEEEE-------------C
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDME-TKSCLKLFAHN--DYVTCIQFNPMDDDY--FISGS-------------L 615 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~-t~~~i~~~~h~--~~V~sv~fsp~~~~~--L~sgs-------------~ 615 (969)
..+..++|+| +++|++++.+ .|.+|++. +++......+. +.+.+++|+| ++++ ++++. .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 3567899999 7888888888 99999997 78776554332 3466789999 8884 44543 6
Q ss_pred CCeEEEEeCC-CceEEEEe-----cCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeeecccccCCCC
Q 002086 616 DAKVRIWSIS-DRLVVDWT-----DLHEMVTAACYTPDGQNALIGSH-KGSCRLYSIE-DSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 616 Dg~I~IWDl~-~~~~~~~~-----~~~~~V~sv~fspdg~~Lasgs~-dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~~ 687 (969)
+|.+.+|++. .+++.... .+...+.+++|+|+|++|+++.. ++.|++|++. +++......+. ...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~----~~~~g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD----APDPGD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE----CSSTTC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe----cCCCCC
Confidence 8999999997 45543222 24467999999999998887764 6899999998 66653222111 012356
Q ss_pred CeEEEEEcCCCCceEEEEe-CCCcEEEEeCC--cceE-----EEEeecC-----CC------CeEEEE-EeCCCCEEEEE
Q 002086 688 KITGFQFSPSNPSEVLVTS-ADSRIRILDGL--DIVH-----KFRGFRN-----TS------SQISAA-FNADGKYIISA 747 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~--~~~~-----~~~~~~~-----~~------~V~sl~-fspdg~~LaSg 747 (969)
.+..++|+|++ +++++++ .++.|.+|+.. +... .+..... .. .+..++ |+|||++|+++
T Consensus 194 ~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 194 HPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 68999999998 5666655 57899999743 2211 1221111 11 478899 99999998877
Q ss_pred eCCC------cEEEEEcC
Q 002086 748 SEDS------QVYVWKRE 759 (969)
Q Consensus 748 s~Dg------~I~IWdl~ 759 (969)
+.+. .|.+|++.
T Consensus 273 ~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEESSTTSCCEEEEEEEC
T ss_pred CCCCCCCCCCeEEEEEEC
Confidence 6533 89999996
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.50 E-value=5.1e-13 Score=162.71 Aligned_cols=255 Identities=9% Similarity=0.026 Sum_probs=169.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEE--eCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASA--GEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTg--s~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
..+.+|...|..++|++++-++++. +.++...||....+.....+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------------------------- 70 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNV-------------------------- 70 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCB--------------------------
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccc--------------------------
Confidence 3467899999999999887777777 668899999864332222111100000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEec--C-CcE-EEEEeC-CCcEEEEECC--C-CcEEEEee--
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS--R-SHL-LLSSSM-DKTVRLWDME--T-KSCLKLFA-- 592 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs--~-~~~-L~Sgs~-DgtV~IWDl~--t-~~~i~~~~-- 592 (969)
......+.+. ...|+ | ++. |+.++. +..|.+|++. . ++......
T Consensus 71 ------------------------~~~~~~~~~~--~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 71 ------------------------RNRVFEYSGF--PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp ------------------------CCCGGGTCCC--CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred ------------------------cccccccCCc--cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence 0001111111 23343 7 566 555543 5677778876 3 55444444
Q ss_pred ---cCCCeEEEEEecCCCCEEEEEECC----------CeEEEEeCCC------ceEEEEe-cCCCCEEEEEEccCCCEEE
Q 002086 593 ---HNDYVTCIQFNPMDDDYFISGSLD----------AKVRIWSISD------RLVVDWT-DLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 593 ---h~~~V~sv~fsp~~~~~L~sgs~D----------g~I~IWDl~~------~~~~~~~-~~~~~V~sv~fspdg~~La 652 (969)
|...+.+++|+| +++.|++++.+ ..|++||+.+ +....+. .+...+..++|+|||++|+
T Consensus 125 ~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la 203 (662)
T 3azo_A 125 AVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAV 203 (662)
T ss_dssp CSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEE
T ss_pred cCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEE
Confidence 667889999999 99999998877 5899999998 7777766 6667788899999999999
Q ss_pred EEeCC--------CcEEEEEcC-CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCCcceE
Q 002086 653 IGSHK--------GSCRLYSIE-DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGLDIVH 721 (969)
Q Consensus 653 sgs~d--------g~I~IwDl~-~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~~~~~ 721 (969)
.++.+ ..|++||+. ++.......+ ...+...+..+.|+|++. +++++..++ .|++||......
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-----~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-----LGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-----EEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCE
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCcccccEEe-----CCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCce
Confidence 87755 379999998 4622111111 123456789999999994 778888888 677777533221
Q ss_pred -EEEeecCCC-------CeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 722 -KFRGFRNTS-------SQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 722 -~~~~~~~~~-------~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+....... .+..++|+++++++++++. +.++||.++
T Consensus 278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 111111110 1457899999999999999 999999543
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.49 E-value=1.5e-12 Score=161.29 Aligned_cols=260 Identities=12% Similarity=0.117 Sum_probs=156.8
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec-CCccCcccccccCCCCCccCCCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE-GNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~-~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+++.+.++. .|..|.+.+...+|||||+.||.+. |+.|.+|++.+++...... +....
T Consensus 97 ~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------------- 155 (740)
T 4a5s_A 97 YDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------------- 155 (740)
T ss_dssp EETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------------
T ss_pred EECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------------
Confidence 455554433 4677889999999999999999985 7899999998877654211 11000
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC---------CCEEEEEecC-CcEEEEEeCC----------
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL---------DDVLDLSWSR-SHLLLSSSMD---------- 574 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~---------~~I~~l~fs~-~~~L~Sgs~D---------- 574 (969)
.+.++. +....+.|+| ++.|+.++.|
T Consensus 156 ----------------------------------~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 156 ----------------------------------IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp ----------------------------------EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred ----------------------------------eecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEE
Confidence 011111 1112244444 3344433211
Q ss_pred --------------------------CcEEEEECCC---C---cEEEEee------cCCCeEEEEEecCCCCEEEEEEC-
Q 002086 575 --------------------------KTVRLWDMET---K---SCLKLFA------HNDYVTCIQFNPMDDDYFISGSL- 615 (969)
Q Consensus 575 --------------------------gtV~IWDl~t---~---~~i~~~~------h~~~V~sv~fsp~~~~~L~sgs~- 615 (969)
.+|++||+.+ + +...... |...+..++|+| +++.++....
T Consensus 202 ~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r 280 (740)
T 4a5s_A 202 FYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRR 280 (740)
T ss_dssp ECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEES
T ss_pred eecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCC
Confidence 2589999999 7 4544432 778899999999 8886665533
Q ss_pred ---CCeEEEEeCCCce----EE---EE--ecCCCCEE-----EEEEccCCCEEE-EEeC-CC--cEEEEEcCCCceeeee
Q 002086 616 ---DAKVRIWSISDRL----VV---DW--TDLHEMVT-----AACYTPDGQNAL-IGSH-KG--SCRLYSIEDSKLHQLN 674 (969)
Q Consensus 616 ---Dg~I~IWDl~~~~----~~---~~--~~~~~~V~-----sv~fspdg~~La-sgs~-dg--~I~IwDl~~~~~~~~~ 674 (969)
+..|++||+.+++ +. .+ ..+...|. .+.|+|||+.|+ ..+. +| .|++||+.++.....
T Consensus 281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l- 359 (740)
T 4a5s_A 281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI- 359 (740)
T ss_dssp STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES-
T ss_pred CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec-
Confidence 3479999998876 21 11 33443333 688999999877 6653 33 688889887664332
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeC----CC--cEEEEeCCcceEEEEeec----CCCCeEEEEEeCCCCEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA----DS--RIRILDGLDIVHKFRGFR----NTSSQISAAFNADGKYI 744 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~----Dg--~I~IwD~~~~~~~~~~~~----~~~~V~sl~fspdg~~L 744 (969)
......+..+.. +++...++++.. .+ .|+..++........... .......+.|+|+++++
T Consensus 360 --------T~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~ 430 (740)
T 4a5s_A 360 --------TKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYY 430 (740)
T ss_dssp --------CCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEE
T ss_pred --------ccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEE
Confidence 222344555432 345455555554 23 344445443222111111 13457889999999987
Q ss_pred EEEeCC---CcEEEEEcCCC
Q 002086 745 ISASED---SQVYVWKREEH 761 (969)
Q Consensus 745 aSgs~D---g~I~IWdl~t~ 761 (969)
+..... ..+.+++..++
T Consensus 431 ~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 431 QLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EEEECSBSSCEEEEEETTTT
T ss_pred EEEeCCCCCCEEEEEECCCC
Confidence 765543 36888888763
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.48 E-value=7.9e-13 Score=149.15 Aligned_cols=251 Identities=12% Similarity=0.076 Sum_probs=157.3
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+..+.|+|||++|+.++.++.|.+||+.+++........... .. ++.
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~------~~-------~g~-------------------- 129 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW------KG-------YGT-------------------- 129 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE------EE-------EEE--------------------
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc------CC-------CCC--------------------
Confidence 344889999999999999999999999988765433211100 00 000
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE-----eCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS-----SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD 607 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg-----s~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~ 607 (969)
.+.-........+ ....+.|+| ++.++.+ ..+..|.+||+.+++......+...+..+.|+|.++
T Consensus 130 ----~l~~~~~~~~~~~-----~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg 200 (396)
T 3c5m_A 130 ----WVANSDCTKLVGI-----EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDD 200 (396)
T ss_dssp ----EEECTTSSEEEEE-----EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEE
T ss_pred ----EEEeccCCccccc-----cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCC
Confidence 0000000000000 001234566 4544433 456789999999999888878888999999998446
Q ss_pred CEEEEEECC------CeEEEEeCCCceEEEEecCC--CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeee
Q 002086 608 DYFISGSLD------AKVRIWSISDRLVVDWTDLH--EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 608 ~~L~sgs~D------g~I~IWDl~~~~~~~~~~~~--~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~ 674 (969)
..|+.++.+ ..|.+||+.++....+..+. ..+..++|+|+|++|+.++.+ +.|++||+.+++.....
T Consensus 201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 201 STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 666665543 46899999877665555432 357889999999988776544 44999999887654322
Q ss_pred eeeecccccCCCCCeEEEEEcC-CCCceEEEEe----------------CCCcEEEEeCCcce-EEEEeecCCC------
Q 002086 675 QVDFQTKKKSSTRKITGFQFSP-SNPSEVLVTS----------------ADSRIRILDGLDIV-HKFRGFRNTS------ 730 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fsp-d~~~~l~sgs----------------~Dg~I~IwD~~~~~-~~~~~~~~~~------ 730 (969)
.. . ... +.|+| ++ .+++.++ .+..|++||..... ..+..+....
T Consensus 281 ~~------~----~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (396)
T 3c5m_A 281 VM------P----PCS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD 348 (396)
T ss_dssp EC------C----SEE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred eC------C----CCC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence 11 1 123 88999 88 5666544 34789999965432 2233222110
Q ss_pred ---CeEEEEEeCCCCEEEEEeC-CCcEEEEEc
Q 002086 731 ---SQISAAFNADGKYIISASE-DSQVYVWKR 758 (969)
Q Consensus 731 ---~V~sl~fspdg~~LaSgs~-Dg~I~IWdl 758 (969)
.+..++|+|||++|+.++. ++...||.+
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 2456789999998887765 455455544
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.44 E-value=1.5e-11 Score=131.51 Aligned_cols=237 Identities=8% Similarity=0.043 Sum_probs=167.6
Q ss_pred CEEEEEEeCCCCEEE-EEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 453 SIWTIKFSLDARFLA-SAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 453 ~I~~l~fSpDg~~La-Tgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
...+|+++++|++++ +...++.|.+|+..++.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~------------------------------------------- 61 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------------------------------- 61 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------------------------------------------
Confidence 778999999999777 546789999998754332110
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCE
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDY 609 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~ 609 (969)
...+...+.++++.+ +.++++.. ++.|.+||.......... .....+.++++++ ++.+
T Consensus 62 ------------------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l 121 (270)
T 1rwi_B 62 ------------------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAV 121 (270)
T ss_dssp ------------------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCE
T ss_pred ------------------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCE
Confidence 001223456788887 55555444 889999998876544322 3336789999999 8888
Q ss_pred EEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 610 FISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 610 L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
+++...++.|.+|+..+....... .....+..++++++|+++++...++.|.+||.......... ......
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~ 193 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------FTDITA 193 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------CSSCCS
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--------ccCCCC
Confidence 887777899999987665443322 22346788999999997777777889999998876543211 122367
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+.++++++++ .++++...++.|.+|+............+...+.+++++++|+++++...++.|++|++...
T Consensus 194 p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 194 PWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred ceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 8899999987 67777777889999997654333322223356889999999999899999999999999874
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.44 E-value=2.2e-11 Score=135.29 Aligned_cols=220 Identities=11% Similarity=0.148 Sum_probs=151.0
Q ss_pred cCEEEEEEeCCCCEEEEEeCC---C--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 452 GSIWTIKFSLDARFLASAGED---R--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~D---g--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
..+..++|+|||++||.++.+ + .|.+|++.+++....
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-------------------------------------- 100 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-------------------------------------- 100 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE--------------------------------------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE--------------------------------------
Confidence 568899999999999988754 3 377777776654331
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---------------------------CcEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---------------------------KTVR 578 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---------------------------gtV~ 578 (969)
..+.. +..+.|+| ++.|+.++.+ ..|.
T Consensus 101 ------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 101 ------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp ------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred ------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 11223 88899998 6777777632 5799
Q ss_pred EEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC---------eEEEEeCCCceEEEEecCCCCEEEEEEccCCC
Q 002086 579 LWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA---------KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 579 IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg---------~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~ 649 (969)
+||+.+++.+..+... .+..++|+| ++ +++++..++ .|.++| +++...+..+ ..+..+ +|+|+
T Consensus 156 ~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~ 227 (347)
T 2gop_A 156 IFDTESEEVIEEFEKP-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGE 227 (347)
T ss_dssp EEETTTTEEEEEEEEE-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSS
T ss_pred EEECCCCeEEeeecCC-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCC
Confidence 9999998874444224 889999999 78 777776542 355555 6666555554 455544 99999
Q ss_pred EEEEEeCC--------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEE-EEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 650 NALIGSHK--------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG-FQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 650 ~Lasgs~d--------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~-l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
+|+.++.+ ..|.+|| +++.... ...+...+.. +.|+ ++ ++++++.++.++|| .....
T Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l--------~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 228 RILLYGKPEKKYMSEHNKLYIYD--GKEVMGI--------LDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp CEEEEECCSSSCCCSSCEEEEEC--SSCEEES--------STTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSS
T ss_pred EEEEEEccccCCccccceEEEEC--CCceEec--------cccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCc
Confidence 98887754 3677787 4433211 1344566776 8998 65 88888999999998 65322
Q ss_pred EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE-EEEEcC
Q 002086 721 HKFRGFRNTSSQISAAFNADGKYIISASEDSQV-YVWKRE 759 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I-~IWdl~ 759 (969)
......+...|.+++|+| .++++++.++.. .||.++
T Consensus 294 -~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 294 -IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 222233466788999999 688888877765 777775
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.42 E-value=1.8e-11 Score=150.92 Aligned_cols=242 Identities=11% Similarity=0.085 Sum_probs=167.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCC-----cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDR-----VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~Dg-----tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|...+..++|||||++||.+..++ .|++||+.+++.+...
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~---------------------------------- 167 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------------------------------- 167 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 4666789999999999998776543 8999999988765410
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCc----------------EEEEECCCCc
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKT----------------VRLWDMETKS 586 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dgt----------------V~IWDl~t~~ 586 (969)
+. + ..+..++|+| ++.|+.++.++. |++|++.+++
T Consensus 168 --------------------------~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 168 --------------------------LE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp --------------------------EE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred --------------------------cc-C-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence 11 1 1245689998 788888888766 9999999876
Q ss_pred E--EEEe---ecCCCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCC------c--eEEEEecCCCCEEEEEEccCC
Q 002086 587 C--LKLF---AHNDYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISD------R--LVVDWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 587 ~--i~~~---~h~~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~------~--~~~~~~~~~~~V~sv~fspdg 648 (969)
. ..++ .|...+..+.|+| ++.+|+.++. +..|++||+.+ + ....+..+...+.. .|+++|
T Consensus 220 ~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg 297 (710)
T 2xdw_A 220 SEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG 297 (710)
T ss_dssp GGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET
T ss_pred ccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccC
Confidence 2 2233 2456688999999 9998887765 56899999976 4 45556665555554 588999
Q ss_pred CEEEEEeCCC----cEEEEEcCCCceeeeeeeeecccccCCC-CCeEEEEEcCCCCceEEEEeCCCc--EEEEeCCcc--
Q 002086 649 QNALIGSHKG----SCRLYSIEDSKLHQLNQVDFQTKKKSST-RKITGFQFSPSNPSEVLVTSADSR--IRILDGLDI-- 719 (969)
Q Consensus 649 ~~Lasgs~dg----~I~IwDl~~~~~~~~~~~~~~~~~~~h~-~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~~~~-- 719 (969)
+.|+..+..+ .|.+||+.++.......+ . .... ..+..+.|++++ .++++...++. |++|+....
T Consensus 298 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l--~---~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 298 TVFTFKTNRHSPNYRLINIDFTDPEESKWKVL--V---PEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TEEEEEECTTCTTCEEEEEETTSCCGGGCEEE--E---CCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCCcccceec--c---CCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCE
Confidence 9888766533 699999987642100011 0 1112 357788998655 67778888875 566776332
Q ss_pred eEEEEeecCCCCeEEEEEeCCCCEEEEE-e---CCCcEEEEEcCCCC
Q 002086 720 VHKFRGFRNTSSQISAAFNADGKYIISA-S---EDSQVYVWKREEHR 762 (969)
Q Consensus 720 ~~~~~~~~~~~~V~sl~fspdg~~LaSg-s---~Dg~I~IWdl~t~~ 762 (969)
...+.. +...+..++++|++..|+.. + ..+.|++||+.+++
T Consensus 372 ~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 LKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 233332 35668889999998766633 2 24789999998754
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.40 E-value=9.9e-12 Score=151.30 Aligned_cols=205 Identities=11% Similarity=0.015 Sum_probs=136.2
Q ss_pred CCCCEEEEEecC-CcEEEEEeCC----------CcEEEEECCC------CcEEEEe-ecCCCeEEEEEecCCCCEEEEEE
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMD----------KTVRLWDMET------KSCLKLF-AHNDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~D----------gtV~IWDl~t------~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs 614 (969)
|...+.+++|+| ++.|++++.+ ..|++||+.+ ++..... .+...+..++|+| ++++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 556788999999 7889988877 5899999998 7766666 6677888999999 999998877
Q ss_pred CC--------CeEEEEeCC-Cc---eEEEEecC-CCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeec
Q 002086 615 LD--------AKVRIWSIS-DR---LVVDWTDL-HEMVTAACYTPDGQNALIGSHKG--SCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 615 ~D--------g~I~IWDl~-~~---~~~~~~~~-~~~V~sv~fspdg~~Lasgs~dg--~I~IwDl~~~~~~~~~~~~~~ 679 (969)
.+ ..|++||+. ++ +...+... ...+..++|+|||++++++..++ .|.+||+.+++..........
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 286 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE 286 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence 55 379999999 56 55555543 57899999999999777888888 666667656654332211000
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE--eCCcceEEEEeecCCCCeEEE-EEeCCCCEEEEEeCCC--cEE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL--DGLDIVHKFRGFRNTSSQISA-AFNADGKYIISASEDS--QVY 754 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw--D~~~~~~~~~~~~~~~~V~sl-~fspdg~~LaSgs~Dg--~I~ 754 (969)
.....-.-.+..++|+|++ .+++++.. +.++|| |..... ......+...+..+ +++.+.-++++++.+. .|+
T Consensus 287 ~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp SSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred ccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 0000000114568899887 68888888 999998 543222 12222334455555 4443333444555554 455
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
+||+.++
T Consensus 364 ~~d~~~g 370 (662)
T 3azo_A 364 ELDTVTG 370 (662)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 6666553
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.40 E-value=1.7e-11 Score=135.63 Aligned_cols=201 Identities=13% Similarity=0.164 Sum_probs=145.1
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECC----CeEEEE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLD----AKVRIW 622 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~D----g~I~IW 622 (969)
.+.++...+.+++|++ +.+++++..++.|.+||..+++..... .+...+.++++++ ++.++++...+ +.|.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEE
Confidence 3445666778999998 666778888999999999998877655 5678899999999 88888777666 689999
Q ss_pred eCCCceEEEEe---cCCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 623 SISDRLVVDWT---DLHEMVTAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 623 Dl~~~~~~~~~---~~~~~V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
|..++...... .....+..++++|+|+++++... .+.|..||..+++..... .....+..++
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~i~ 188 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---------QNISVANGIA 188 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---------EEESSEEEEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee---------cCCCcccceE
Confidence 99887765332 23456899999999987776653 356666766555443221 1123478899
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCc---ceEEE-----EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLD---IVHKF-----RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~-----~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
|+|++..++++...++.|++||... ....+ ........+..++++++|.++++...++.|.+|+.+
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 9999843555556788999999632 22211 111112356789999999988888888999999974
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.37 E-value=7.5e-11 Score=131.29 Aligned_cols=235 Identities=9% Similarity=0.015 Sum_probs=165.6
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
.....|.+. +++++++...++.|.+||..+++.+..+.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----------------------------------------- 81 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----------------------------------------- 81 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-----------------------------------------
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-----------------------------------------
Confidence 456778875 45566666778999999999888765321
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe-CCCcEEEEECCCCcEEEEeecCC------CeEEEEEec
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS-MDKTVRLWDMETKSCLKLFAHND------YVTCIQFNP 604 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs-~DgtV~IWDl~t~~~i~~~~h~~------~V~sv~fsp 604 (969)
.......++++++..++.+. .++.|.+||..+++....+.... ....|++ .
T Consensus 82 ---------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~ 139 (328)
T 3dsm_A 82 ---------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y 139 (328)
T ss_dssp ---------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E
T ss_pred ---------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E
Confidence 22456788887644555555 89999999999999887775444 6677888 3
Q ss_pred CCCCEEEEEE-CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC----------CcEEEEEcCCCceeee
Q 002086 605 MDDDYFISGS-LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK----------GSCRLYSIEDSKLHQL 673 (969)
Q Consensus 605 ~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d----------g~I~IwDl~~~~~~~~ 673 (969)
++.++++.. .++.|.+||+.++++............++++|+|++++++..+ +.|.+||..+++....
T Consensus 140 -~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~ 218 (328)
T 3dsm_A 140 -GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ 218 (328)
T ss_dssp -TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred -CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence 444444443 4899999999999887766666667889999999877766554 7899999998876543
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe-ec-CCCCeEEEEEeC-CCCEEEEE---
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-FR-NTSSQISAAFNA-DGKYIISA--- 747 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-~~-~~~~V~sl~fsp-dg~~LaSg--- 747 (969)
..+ ........++|+|++ ..|+++.. .|.+||.......... .. .......++++| ++.++++.
T Consensus 219 ~~~-------~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~ 288 (328)
T 3dsm_A 219 FKF-------KLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID 288 (328)
T ss_dssp EEC-------CTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT
T ss_pred Eec-------CCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc
Confidence 221 112368899999988 56666544 8999996543221111 11 134578899999 55666666
Q ss_pred -eCCCcEEEEEcCCCC
Q 002086 748 -SEDSQVYVWKREEHR 762 (969)
Q Consensus 748 -s~Dg~I~IWdl~t~~ 762 (969)
..++.|.+||.. ++
T Consensus 289 y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 289 YQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SSSEEEEEEECTT-CC
T ss_pred cccCCEEEEECCC-CC
Confidence 578899999987 44
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.36 E-value=8.7e-12 Score=153.33 Aligned_cols=243 Identities=10% Similarity=0.008 Sum_probs=163.7
Q ss_pred ccccCEEEEEEeCCCCEEE-----EEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLA-----SAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~La-----Tgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|...+.+++|||||++|| .|+.+.+|++||+.+++.+. ..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~-------------------------------- 163 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VD-------------------------------- 163 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SC--------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--Cc--------------------------------
Confidence 5777899999999999998 45556799999999876430 00
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCc-------------EEEEECCCCcE--
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKT-------------VRLWDMETKSC-- 587 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dgt-------------V~IWDl~t~~~-- 587 (969)
.+.+. ....++|+| ++.|+.++.|.. |++|++.+++.
T Consensus 164 -------------------------~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 216 (695)
T 2bkl_A 164 -------------------------VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD 216 (695)
T ss_dssp -------------------------CBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC
T ss_pred -------------------------ccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc
Confidence 00000 014588999 788999988876 99999998862
Q ss_pred EEEe---ecCCCeEEEEEecCCCCEEEEEECCC----eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC----
Q 002086 588 LKLF---AHNDYVTCIQFNPMDDDYFISGSLDA----KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH---- 656 (969)
Q Consensus 588 i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg----~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~---- 656 (969)
..++ .|...+.++.|+| ++.+|+.++.++ .|++|+..++....+..+...+....+ ++|. |+..+.
T Consensus 217 ~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~ 293 (695)
T 2bkl_A 217 TVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAP 293 (695)
T ss_dssp EEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCT
T ss_pred eEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCC
Confidence 2333 3556889999999 888888877666 788888777777666666666666666 5666 555443
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCC-CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-cceEEEEe-ecCCCCeE
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSS-TRKITGFQFSPSNPSEVLVTSADSRIRILDGL-DIVHKFRG-FRNTSSQI 733 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h-~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~-~~~~~~V~ 733 (969)
++.|.+||+.++.......+ + ..+ ...+..+.|+ ++ .++++...|+..+||... ........ ......+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l-~----~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~ 366 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEI-V----PEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAAS 366 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEE-E----CCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEEC
T ss_pred CCEEEEEeCCCCCccCCeEE-e----cCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEE
Confidence 57899999977642100111 0 112 4457788887 33 688888889988877532 11111111 12245567
Q ss_pred EEEEeCCCCEEEEEe----CCCcEEEEEcCCCC
Q 002086 734 SAAFNADGKYIISAS----EDSQVYVWKREEHR 762 (969)
Q Consensus 734 sl~fspdg~~LaSgs----~Dg~I~IWdl~t~~ 762 (969)
.++++|+++.|+... ..+.|++||+.+++
T Consensus 367 ~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 367 NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788999998776332 34789999998753
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.35 E-value=1.6e-09 Score=116.74 Aligned_cols=240 Identities=7% Similarity=0.055 Sum_probs=172.5
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+..+...+.+|++.++|+++++...++.|.+||.. ++....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-------------------------------------- 50 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY-------------------------------------- 50 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE--------------------------------------
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe--------------------------------------
Confidence 44566789999999999988877778899999987 543221
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEe
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFN 603 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fs 603 (969)
.+..+...+.++++.+ +.++++...++.|..||.. ++..... .....+.++++.
T Consensus 51 ----------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~ 107 (299)
T 2z2n_A 51 ----------------------PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEG 107 (299)
T ss_dssp ----------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred ----------------------cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEEC
Confidence 0011235678899988 5666666668899999987 4432222 245678999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+ ++.++++...++.|.+||. ++...... .....+..+++.++|..+++...++.|.+||. +++..... .
T Consensus 108 ~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~---~--- 178 (299)
T 2z2n_A 108 P-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFK---I--- 178 (299)
T ss_dssp T-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE---C---
T ss_pred C-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEee---C---
Confidence 8 7888887777889999999 55544432 23456899999999988777777889999998 65543210 1
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
......+.++++.+++ .++++...++.|.+||.......+........+.+++++++|.++++...++.|.+||..
T Consensus 179 -~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 179 -PTPASGPVGITKGNDD-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -SSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -CCCCCcceeEEECCCC-CEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 2234568899999987 566666668899999973333333333344668899999999977777678899999983
No 183
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=5.4e-10 Score=121.95 Aligned_cols=247 Identities=9% Similarity=0.102 Sum_probs=169.7
Q ss_pred cccccCEEEEEEeCCCCEEEE-------EeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 448 QAHEGSIWTIKFSLDARFLAS-------AGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaT-------gs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
...-....+++|+++|+++++ +..++.|.+||..+++......
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------------------------------ 63 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK------------------------------ 63 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC------------------------------
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe------------------------------
Confidence 334456789999999998888 5778999999987766532100
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEE-ee-----c
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLKL-FA-----H 593 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~-~~L~Sgs~DgtV~IWDl~t~~~i~~-~~-----h 593 (969)
....++...+.+++++++ ..|+.++..+.|.+||.. ++.... .. .
T Consensus 64 ---------------------------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 64 ---------------------------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRR 115 (314)
T ss_dssp ---------------------------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCB
T ss_pred ---------------------------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCcc
Confidence 011224456889999885 777777666689999998 776554 32 1
Q ss_pred CCCeEEEEEecCCCCEEEEEECC---------------CeEEEEeCCCceEEEEecCCCCEEEEEEc----cCCCEEEEE
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLD---------------AKVRIWSISDRLVVDWTDLHEMVTAACYT----PDGQNALIG 654 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~D---------------g~I~IWDl~~~~~~~~~~~~~~V~sv~fs----pdg~~Lasg 654 (969)
...+.++++++ +++++++...+ +.|..||.. ++.............++|+ ++++.|+++
T Consensus 116 ~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 116 MQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp CBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEE
T ss_pred ccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEE
Confidence 23588999999 88877776655 578888876 6555544444567889999 999766555
Q ss_pred -eCCCcEEEEEcC-CCceeeeeeeeecccccCCC-CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCC
Q 002086 655 -SHKGSCRLYSIE-DSKLHQLNQVDFQTKKKSST-RKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNT 729 (969)
Q Consensus 655 -s~dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~-~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~ 729 (969)
..++.|.+||+. .++......+ .....+. ..+..+++++++ .++++...++.|.+||..+ ....+. .+.
T Consensus 194 ~~~~~~i~~~~~~~~g~~~~~~~~---~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~ 267 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAKIENKKVW---GHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIR--CPF 267 (314)
T ss_dssp ETTTTEEEEEEEEETTEEEEEEEE---EECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEE--CSS
T ss_pred ECCCCeEEEEECCCCCccccceEE---EECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEe--CCC
Confidence 567899999986 4433211111 1112222 567889999987 6777777889999999762 233332 233
Q ss_pred CCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYII-SASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~La-Sgs~Dg~I~IWdl~t 760 (969)
..+.+++|+++|++|+ +...++.|..|++..
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5688999999999554 555568999999875
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.34 E-value=1.3e-10 Score=128.87 Aligned_cols=183 Identities=13% Similarity=0.129 Sum_probs=125.6
Q ss_pred CCEEEEEecC-CcEEEEEeCC---C--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC------------
Q 002086 555 DDVLDLSWSR-SHLLLSSSMD---K--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD------------ 616 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~D---g--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D------------ 616 (969)
..+..+.|+| ++.|+.++.+ + .|.+||+.+++......+.. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 3467899999 7788877654 2 48888999988877776555 99999999 88888887632
Q ss_pred ---------------CeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCC-------cEEEEEcCCCceeee
Q 002086 617 ---------------AKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKG-------SCRLYSIEDSKLHQL 673 (969)
Q Consensus 617 ---------------g~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg-------~I~IwDl~~~~~~~~ 673 (969)
..|++||+.+++. ..+.. . .+..++|+|+| +++++..++ ...||.+.+++....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l 213 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM 213 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence 5799999998877 44444 3 78899999999 777776542 345554444443221
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC--------CcEEEEeCCcceEEEEeecCCCCeEE-EEEeCCCCEE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD--------SRIRILDGLDIVHKFRGFRNTSSQIS-AAFNADGKYI 744 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D--------g~I~IwD~~~~~~~~~~~~~~~~V~s-l~fspdg~~L 744 (969)
. .+ ..+..+ +|++ ..|+.++.+ ..|++|| .... ......+...+.. +.|+ |+ ++
T Consensus 214 ~---------~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 214 F---------EK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-GKEV-MGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp E---------EE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC-SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred c---------cC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC-CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence 1 11 334444 8988 556555533 4688898 3222 1111223455665 8999 98 99
Q ss_pred EEEeCCCcEEEEEcCC
Q 002086 745 ISASEDSQVYVWKREE 760 (969)
Q Consensus 745 aSgs~Dg~I~IWdl~t 760 (969)
++++.++.++|| +.+
T Consensus 277 ~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEEETTEEEEE-EES
T ss_pred EEEecCCcEEEE-EcC
Confidence 999999999999 874
No 185
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.33 E-value=7.9e-11 Score=133.08 Aligned_cols=257 Identities=9% Similarity=0.044 Sum_probs=165.6
Q ss_pred EEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEee-------cCCCeEEEEEecCCCCEEEEEEC--CCe
Q 002086 559 DLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDDDYFISGSL--DAK 618 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~~~L~sgs~--Dg~ 618 (969)
.++|+| +++|+++. .+++|.+||+.+++.+..+. +......++|+| ++++|+++.. ++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCe
Confidence 789999 77888876 36789999999999887763 235678899999 9999988864 589
Q ss_pred EEEEeCCCceEEEE-ecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCC-CceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 619 VRIWSISDRLVVDW-TDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 619 I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
|.+||+.+++++.. ...... ..+.+.|++ ..+++.+.||.+.+|++.. ++....... .........++ .+.+.
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~~~~~~~~~~~-~~~~~ 208 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS--KQMFSVKDDPI-FIAPA 208 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC--CCCSCTTTSCB-CSCCE
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc--cceEcCCCCce-EEEec
Confidence 99999999988876 655443 335677766 6778889999999999865 443311100 00001111121 22335
Q ss_pred CCCCceEEEEeCCCcEEEEeCCcce-EEEEee---c----C----CCCeEEEEEeCCCCEEEEEeC-----------CCc
Q 002086 696 PSNPSEVLVTSADSRIRILDGLDIV-HKFRGF---R----N----TSSQISAAFNADGKYIISASE-----------DSQ 752 (969)
Q Consensus 696 pd~~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~---~----~----~~~V~sl~fspdg~~LaSgs~-----------Dg~ 752 (969)
+++ ..++..+.++.|+++|..... ...... . . ......++|+||+++++.+.. .+.
T Consensus 209 ~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 LDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp ECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred ccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 555 456666788999999965321 111110 0 0 011112689999888877653 347
Q ss_pred EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc
Q 002086 753 VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG 832 (969)
Q Consensus 753 I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~ 832 (969)
|.+||+.+. +.+..... +. +....++|++.++++.
T Consensus 288 v~viD~~t~------~~v~~i~~--------------------------------------~~-p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 288 IWVMDTKTK------QRVARIPG--------------------------------------RD-ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp EEEEETTTT------EEEEEEEC--------------------------------------TT-CCEEEEETTTTEEEEE
T ss_pred EEEEECCCC------cEEEEEec--------------------------------------CC-eeEEEECCCCCEEEEe
Confidence 999999873 21111100 01 3344568888888877
Q ss_pred CCCCccccCCCCCC--ccccCCCCCCCCccccccCCC
Q 002086 833 HSRRLLPPLPKKTN--KVERVPSPPEEELSLISHDPG 867 (969)
Q Consensus 833 ~~~~~L~~~~~~s~--~~~~~l~~pee~l~~is~hP~ 867 (969)
+. ..+..|...++ ++.+.+...-+.+..+..+|.
T Consensus 323 n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 323 DG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp CS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 76 88999988887 666654344455555655554
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.31 E-value=6.7e-09 Score=111.85 Aligned_cols=237 Identities=5% Similarity=0.020 Sum_probs=167.7
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.+...+.+|++.++|.++++...++.|..||.. ++....
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~---------------------------------------- 92 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY---------------------------------------- 92 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE----------------------------------------
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE----------------------------------------
Confidence 355789999999999988887778889999875 332110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~ 605 (969)
.+..+...+.++++.+ +.++++...++.|.+||. +++..... .....+.++++.+
T Consensus 93 --------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~- 150 (299)
T 2z2n_A 93 --------------------TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS- 150 (299)
T ss_dssp --------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-
T ss_pred --------------------eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-
Confidence 0011234578899988 666666667889999999 66554433 3456789999998
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
++.++++...++.|..||. ++++.... .....+..++++++|.++++...++.|.+||. +++.... . ..
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~------~~ 221 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF-K------IP 221 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-E------CS
T ss_pred CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE-E------CC
Confidence 7887777777789999999 66655432 23456889999999987777667889999999 6554321 1 12
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.....+.++++.+++ .++++...++.|.+||.......+....+...+.++++ ++|.+.++.. .+.|..++.++
T Consensus 222 ~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 222 TPNARPHAITAGAGI-DLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp STTCCEEEEEECSTT-CEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCceeEEECCCC-CEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 345678999999987 55555557889999997443333333333456889999 8888777665 56788888765
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.30 E-value=4.2e-09 Score=119.56 Aligned_cols=266 Identities=10% Similarity=-0.050 Sum_probs=172.8
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|..+++.+.++.....+ .++|+|||++|+.+. .++.|.+||..+++.+.......
T Consensus 51 v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~----------- 117 (373)
T 2mad_H 51 VLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD----------- 117 (373)
T ss_pred EEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC-----------
Confidence 4466677777778765555 999999999988876 36889999998877765432100
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEE
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWD 581 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWD 581 (969)
.. .+. +...-..+.|+| +++|+++.. ++.|.++|
T Consensus 118 ---------------------------------------~~---~~~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD 154 (373)
T 2mad_H 118 ---------------------------------------AP---RFD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred ---------------------------------------cc---ccc-cCCCccceEECCCCCEEEEEecCCCCeEEEEE
Confidence 00 000 012234788999 788888774 57899999
Q ss_pred CCCCcEEEE-eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec------CCCC-EEEEEEccCCCEEEE
Q 002086 582 METKSCLKL-FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD------LHEM-VTAACYTPDGQNALI 653 (969)
Q Consensus 582 l~t~~~i~~-~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~------~~~~-V~sv~fspdg~~Las 653 (969)
.+++.+.. +..... +.+.|.....+++.+.||.+.++|. +++...... ...+ .....+.+++..++.
T Consensus 155 -~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (373)
T 2mad_H 155 -QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred -CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEE
Confidence 99998887 654433 4555634567788889999999999 776653221 1122 233566777666655
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe---------CCCcEEEEeCCcce
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS---------ADSRIRILDGLDIV 720 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs---------~Dg~I~IwD~~~~~ 720 (969)
.+..+.+.+.|+..........+.+... ..........+.++|++...+++.. ..+.|.++|..+..
T Consensus 230 ~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~ 309 (373)
T 2mad_H 230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ 309 (373)
T ss_pred EcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE
Confidence 5578899999997654322222211110 0111233455789998844444332 23579999976544
Q ss_pred EEEEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCC
Q 002086 721 HKFRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
..-... .......+.|+|||+ +|+++. .++.|.+||+.+.+
T Consensus 310 vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 310 TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 433322 233567999999999 788877 48999999999854
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=5.7e-10 Score=121.23 Aligned_cols=210 Identities=10% Similarity=-0.022 Sum_probs=154.3
Q ss_pred CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeee
Q 002086 462 DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541 (969)
Q Consensus 462 Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 541 (969)
.+++|++++.|+.|.+||.++|+.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 46789999999999999998998876432
Q ss_pred cCCCceeEeccCC-CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec--CCCeEEEEEecCCCCEEEEEEC-C
Q 002086 542 LSEKPFCSFIGHL-DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH--NDYVTCIQFNPMDDDYFISGSL-D 616 (969)
Q Consensus 542 ~~~k~~~~l~gH~-~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h--~~~V~sv~fsp~~~~~L~sgs~-D 616 (969)
.+. ..+.++.+.| +++|+ +.++.|..||. +++.+..+.. ...+.++.+.+ +++++++.+. +
T Consensus 33 ----------~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~ 98 (276)
T 3no2_A 33 ----------LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHP 98 (276)
T ss_dssp ----------CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTT
T ss_pred ----------CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCC
Confidence 122 3456788888 66666 56788999999 8888888753 35788999999 9999999887 7
Q ss_pred CeEEEEeCCCceEEEEec-------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 617 AKVRIWSISDRLVVDWTD-------LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~-------~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
+.|..+|. +++.+.... .......+++.++|+++++...++.|..||.. ++....... ...+
T Consensus 99 ~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~---------~~~~ 167 (276)
T 3no2_A 99 STILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL---------SGTP 167 (276)
T ss_dssp EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---------SSCC
T ss_pred CEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC---------CCCc
Confidence 88888887 454443222 11234566789999999999999999999998 776544321 1345
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC------CCCeEEEEEeCCCCEEEEEe
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN------TSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~------~~~V~sl~fspdg~~LaSgs 748 (969)
.++.+.+++ ..++++..++.|..+|..+.....+.... ...+..+...++|.++++..
T Consensus 168 ~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 168 FSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEECTTS-CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 567778877 67777788889999997654444443221 22367888899999988874
No 189
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.29 E-value=1.5e-09 Score=117.28 Aligned_cols=199 Identities=8% Similarity=0.157 Sum_probs=143.7
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-------cCCCeEEEEEecCCCCEEEEEEC-CCeEEE
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDDDYFISGSL-DAKVRI 621 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~I 621 (969)
.+|...+.++++++ +.++++...++.|.+||.. ++.+..+. +...+.++++.+.++.++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 35667899999998 7777777889999999987 66666653 33578999995425555555533 899999
Q ss_pred EeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 622 WSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 622 WDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
||. +++.+.... ....+..++++++|+++++...++.|.+||.... ...... ...+...+.++++++++
T Consensus 105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~------~~~~~~~p~~i~~~~~g- 175 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFG------CSKHLEFPNGVVVNDKQ- 175 (286)
T ss_dssp ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEE------CTTTCSSEEEEEECSSS-
T ss_pred ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeC------CCCccCCcEEEEECCCC-
Confidence 994 555554443 2356899999999998888778899999997543 222111 01344568999999987
Q ss_pred ceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcC
Q 002086 700 SEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDS-QVYVWKRE 759 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg-~I~IWdl~ 759 (969)
.++++...++.|++||.... ...+....+...+..++++++|.++++...++ .|.+|+..
T Consensus 176 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 66777778999999996432 22222222235678999999999999888886 99999964
No 190
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.29 E-value=6.3e-10 Score=123.61 Aligned_cols=220 Identities=8% Similarity=0.079 Sum_probs=154.0
Q ss_pred ccccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce-EEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 437 DLSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE-VMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 437 dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+..+.+++..+. ++-....+|+++++|+++++...++.|++||..... .+..+..... .+
T Consensus 75 d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~----------------~g-- 136 (329)
T 3fvz_A 75 DPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ----------------PG-- 136 (329)
T ss_dssp CTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB----------------CC--
T ss_pred ECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC----------------CC--
Confidence 333344444443 556689999999999999999889999999976431 1211110000 00
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEe-CCCcEEEEECCCCcEEEEe
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSS-MDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs-~DgtV~IWDl~t~~~i~~~ 591 (969)
.-.++......|++++ +.++++.+ .++.|++|| ..+..+..+
T Consensus 137 ----------------------------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 137 ----------------------------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp ----------------------------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred ----------------------------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 0013455688999998 45666665 599999999 567777776
Q ss_pred ec-----------CCCeEEEEEecCC-CCEEEEEECCCeEEEEeCCCceEEEEec---CCCCEEEEEEccCCCEEEE---
Q 002086 592 AH-----------NDYVTCIQFNPMD-DDYFISGSLDAKVRIWSISDRLVVDWTD---LHEMVTAACYTPDGQNALI--- 653 (969)
Q Consensus 592 ~h-----------~~~V~sv~fsp~~-~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~~~V~sv~fspdg~~Las--- 653 (969)
+. -.....|+++| + +.++++...++.|++||..+++.+.... +...+..++|+| +..+++
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 32 23489999999 6 7777888889999999999777766553 346788999999 333333
Q ss_pred ----EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 654 ----GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 654 ----gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
...+..|++|++.+++...... ....+...+..|+++|++ .++++...++.|++|+..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~-----~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFK-----PVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEEC-----CSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEc-----CCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCC
Confidence 3345589999999888654421 113566778999999998 788888899999999843
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.29 E-value=2e-09 Score=128.72 Aligned_cols=258 Identities=11% Similarity=0.135 Sum_probs=177.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecc--cceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ--ECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~--tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+.|..+.+.+.++... ..+..+.|+|||++|++++.|+.|.+||+. +++.+..+
T Consensus 181 viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i----------------------- 236 (567)
T 1qks_A 181 LIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----------------------- 236 (567)
T ss_dssp EEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE-----------------------
T ss_pred EEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE-----------------------
Confidence 3466666777777643 356799999999999999999999999995 55554321
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEec----C-CcEEEEEe-CCCcEEEEECCCCc
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS----R-SHLLLSSS-MDKTVRLWDMETKS 586 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs----~-~~~L~Sgs-~DgtV~IWDl~t~~ 586 (969)
.. ......++|+ | +++++++. .+++|.|+|..+.+
T Consensus 237 --------------------------------------~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 237 --------------------------------------KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp --------------------------------------EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred --------------------------------------ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 11 1224678999 5 66766665 56999999999999
Q ss_pred EEEEee-----------cCC-CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--EEEecCCCCEEEEEEccCCCEEE
Q 002086 587 CLKLFA-----------HND-YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--VDWTDLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 587 ~i~~~~-----------h~~-~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~~~~~~V~sv~fspdg~~La 652 (969)
.+..+. |.. .+..+.+++....+++....+|.|.++|...... +...........+.|+|+|++|+
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 357 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence 988763 112 6788888883344566666779999999987532 23334455678899999999988
Q ss_pred EEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCc---------ceE
Q 002086 653 IGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLD---------IVH 721 (969)
Q Consensus 653 sgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~---------~~~ 721 (969)
++. .++.|.++|+.++++.....+ . ....|.+.-..+ ++|++...++++. .++.|.++|... .+.
T Consensus 358 va~~~sn~V~ViD~~t~kl~~~i~v--g-g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 358 TAANARNKLVVIDTKEGKLVAIEDT--G-GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEEC--S-SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEeCCCCeEEEEECCCCcEEEEEec--c-CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 766 578999999999886544321 0 123444322223 6787645555554 568999999654 233
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEEeC-------CCcEEEEEcCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISASE-------DSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSgs~-------Dg~I~IWdl~t~ 761 (969)
.+... ...-..+.++|++++|..... .+.|.++|+.+.
T Consensus 434 ~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 434 SFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 33322 122234678999999998773 359999999874
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.24 E-value=1.6e-08 Score=109.00 Aligned_cols=239 Identities=7% Similarity=0.015 Sum_probs=171.0
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
......+.+|++.++|+++++...++.|.+||.. ++....
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~--------------------------------------- 55 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF--------------------------------------- 55 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE---------------------------------------
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE---------------------------------------
Confidence 3456789999999999988887778999999977 544321
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEec
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNP 604 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp 604 (969)
.+..+...+.++++.+ +.++++...++.|..||.. ++..... .....+.++++.+
T Consensus 56 ---------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~ 113 (300)
T 2qc5_A 56 ---------------------EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL 113 (300)
T ss_dssp ---------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS
T ss_pred ---------------------ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC
Confidence 0111234577888888 5666666667899999988 6654322 2346789999998
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
++.++++...++.|..||.. ++...... ....+..+++.++|+++++...++.|..||. +++.... . .
T Consensus 114 -~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~------~ 183 (300)
T 2qc5_A 114 -NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEY-P------L 183 (300)
T ss_dssp -TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-E------C
T ss_pred -CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEe-e------C
Confidence 78888877778899999998 65554322 3456899999999996666666789999998 5544321 1 1
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
......+.++++.+++ .++++....+.|.+|+.......+........+.+++++++|.+.++...++.|.+|+..
T Consensus 184 ~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 184 PTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp SSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 2334578899999987 566665667789999974333333333344567899999999977777677899999873
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.23 E-value=3.6e-10 Score=139.96 Aligned_cols=239 Identities=13% Similarity=0.091 Sum_probs=157.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCC-----CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLASAGED-----RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~D-----gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|...+..++|||||++||.++.+ .+|++||+.+++.+...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~---------------------------------- 205 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE---------------------------------- 205 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE----------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc----------------------------------
Confidence 455678999999999999887654 46999999988764310
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCc--------------EEEEECCCCcE--
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKT--------------VRLWDMETKSC-- 587 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~Dgt--------------V~IWDl~t~~~-- 587 (969)
+ +...+..++|+|++.|+.++.++. |++|++.++..
T Consensus 206 --------------------------~--~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 206 --------------------------L--KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp --------------------------E--EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred --------------------------C--CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence 0 001123567887666666666544 99999988762
Q ss_pred EEEee---cCCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCc--e-EEEEecCCCCEEEEEEccCCCEEEEEeC
Q 002086 588 LKLFA---HNDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDR--L-VVDWTDLHEMVTAACYTPDGQNALIGSH 656 (969)
Q Consensus 588 i~~~~---h~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~--~-~~~~~~~~~~V~sv~fspdg~~Lasgs~ 656 (969)
..++. +...+..+.|+| ++.+|+..+.++ .|++||+.++ + ...+..+...+.... +|+|+.|+..+.
T Consensus 258 ~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEEC
Confidence 23332 334689999999 999888777544 8999999877 5 556655555555443 489998888776
Q ss_pred C----CcEEEEEcCCCc--eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe--CCcc-eEEEEeec
Q 002086 657 K----GSCRLYSIEDSK--LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDI-VHKFRGFR 727 (969)
Q Consensus 657 d----g~I~IwDl~~~~--~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD--~~~~-~~~~~~~~ 727 (969)
+ +.|.+||+.++. ..... ..+...+..+.+. +..++++...|+..+||. .... ...+. ..
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~--------~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~ 404 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVV--------PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVS-LP 404 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEE--------CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECB-CS
T ss_pred CCCCCCEEEEEeCCCCccccEEEe--------cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeecc-CC
Confidence 4 459999998742 21111 2233456677777 336788888888877664 3222 22211 22
Q ss_pred CCCCeEEEEEeCCCCEEEEE-e---CCCcEEEEEcCCCC
Q 002086 728 NTSSQISAAFNADGKYIISA-S---EDSQVYVWKREEHR 762 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSg-s---~Dg~I~IWdl~t~~ 762 (969)
....+..++++|+++.|+.. + ..+.|++||+.+++
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 35667889999998766532 2 34789999998753
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.22 E-value=1.6e-09 Score=120.50 Aligned_cols=214 Identities=9% Similarity=0.011 Sum_probs=151.8
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
|..+++.+.++. .......|+++++++++++...++.|.+||..+++....+.....
T Consensus 70 D~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---------------------- 126 (328)
T 3dsm_A 70 DINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM---------------------- 126 (328)
T ss_dssp ETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------------
T ss_pred ECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------------
Confidence 555566666664 346789999999996666655899999999999887654321100
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe--CCCcEEEEECCCCcEEEEeecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS--MDKTVRLWDMETKSCLKLFAHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs--~DgtV~IWDl~t~~~i~~~~h~ 594 (969)
.++......+++ .+..|+.+. .++.|.+||+.+++.+..+...
T Consensus 127 ----------------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 127 ----------------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp ----------------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred ----------------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 001112223444 334444444 4899999999999998888666
Q ss_pred CCeEEEEEecCCCCEEEEEECC----------CeEEEEeCCCceEEEEecC--CCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002086 595 DYVTCIQFNPMDDDYFISGSLD----------AKVRIWSISDRLVVDWTDL--HEMVTAACYTPDGQNALIGSHKGSCRL 662 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~D----------g~I~IWDl~~~~~~~~~~~--~~~V~sv~fspdg~~Lasgs~dg~I~I 662 (969)
.....++++| ++++++++..+ +.|.+||..++++...... ...+..++|+|+++.|+++.. .|.+
T Consensus 172 ~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~ 248 (328)
T 3dsm_A 172 IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWR 248 (328)
T ss_dssp SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEE
T ss_pred CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEE
Confidence 6678899998 78777776554 7899999999987765543 346899999999999888765 8999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE----eCCCcEEEEeCC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT----SADSRIRILDGL 717 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg----s~Dg~I~IwD~~ 717 (969)
||+.+++......+ ........+++++|++..++++. ..++.|.+||..
T Consensus 249 ~d~~t~~~~~~~~~------~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 249 MPVEADRVPVRPFL------EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EETTCSSCCSSCSB------CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EECCCCceeeeeee------cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99988775321100 11246788999999765666666 678899999965
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.19 E-value=4.3e-08 Score=105.55 Aligned_cols=236 Identities=5% Similarity=0.039 Sum_probs=164.7
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.+...+.+|++.++|+++++...++.|.+||.. ++....
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~---------------------------------------- 97 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY---------------------------------------- 97 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE----------------------------------------
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe----------------------------------------
Confidence 445789999999999988887778889999877 543221
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~ 605 (969)
.+......+.++++.+ +.++++...++.|..||.. ++..... .....+.++++.+
T Consensus 98 --------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~- 155 (300)
T 2qc5_A 98 --------------------PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS- 155 (300)
T ss_dssp --------------------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-
T ss_pred --------------------cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-
Confidence 0111224577888887 6666666668899999998 6655332 2456789999998
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
+++++++...++.|..||. +++...+. .....+..+++.++|.++++....+.|.+|+. ++...... ..
T Consensus 156 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-------~~ 226 (300)
T 2qc5_A 156 DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-------IP 226 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-------CS
T ss_pred CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-------CC
Confidence 7887777666889999998 55554432 23356899999999987777667788999998 44432211 12
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.....+.++++.+++ .++++...++.|..|+.......+........+.+++++++|.+.++.. . .|..++.+
T Consensus 227 ~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 227 TPNARPHAITAGKNS-EIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp STTCCEEEEEECSTT-CEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCCCCceEEEECCCC-CEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 345678999999987 5555555678999999754444443333345578899999998666655 4 77777653
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.17 E-value=5.8e-09 Score=113.39 Aligned_cols=197 Identities=11% Similarity=0.029 Sum_probs=142.0
Q ss_pred ceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+..+..+.....+++|++ ++ +++++..++.|..||..++ ......+...+.++++++ ++.++++...++.|.+||
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEc
Confidence 3345666777889999998 55 7888889999999999988 333335677899999999 888887777778999999
Q ss_pred CCCceEEEEecC-----CCCEEEEEEccCCCEEEEE----e-------------CCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 624 ISDRLVVDWTDL-----HEMVTAACYTPDGQNALIG----S-------------HKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 624 l~~~~~~~~~~~-----~~~V~sv~fspdg~~Lasg----s-------------~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
..+++...+... ...+..++++|+|+++++. + ..+.|..++.. ++....
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-------- 167 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP-------- 167 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE--------
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe--------
Confidence 988776554322 1346679999999988873 3 13456666554 332211
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-c--c---eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-D--I---VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~--~---~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
..+......++|+|++ ..+++.+.++.|++|+.. . . ...+ ......+..++++++|+++++. ++.|.+
T Consensus 168 -~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 168 -IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHV 241 (296)
T ss_dssp -ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred -ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence 2344567899999998 555777888999999964 2 1 1222 2234456689999999877766 889999
Q ss_pred EEcC
Q 002086 756 WKRE 759 (969)
Q Consensus 756 Wdl~ 759 (969)
|+.+
T Consensus 242 ~~~~ 245 (296)
T 3e5z_A 242 LTPD 245 (296)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9976
No 197
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.16 E-value=1.3e-08 Score=116.90 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=164.4
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
-.....|+|+++++++++...++.|++||..++++.....
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------------- 169 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------------- 169 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec----------------------------------------
Confidence 3468899999999988888888999999998776644211
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC--cEEEEECCCCcEEEEe----e-cCCCeEEEEE
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK--TVRLWDMETKSCLKLF----A-HNDYVTCIQF 602 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~----~-h~~~V~sv~f 602 (969)
. ..... ++|++ ++.|+++..++ .|.+|+...+.....+ . ....+.++++
T Consensus 170 ---------------------~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 170 ---------------------G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp ---------------------T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE
T ss_pred ---------------------c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE
Confidence 0 11122 77888 67888888766 7999998876654444 3 4567889999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEE----ec-CCCCE-E-EEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDW----TD-LHEMV-T-AACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~----~~-~~~~V-~-sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
+| ++..|+.+..++.|+.||..++....+ .. ..... . .++|+|+ +.++++-..++.|+.|+...... ...
T Consensus 227 ~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~~~ 304 (409)
T 3hrp_A 227 DE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-WFC 304 (409)
T ss_dssp CT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEE
T ss_pred eC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-EEE
Confidence 99 566666677789999999987764443 11 11111 3 8999995 55555566788999999865421 110
Q ss_pred eee-ecc-----cccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCc-ceEEEEeec-------------CCCCeE
Q 002086 675 QVD-FQT-----KKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLD-IVHKFRGFR-------------NTSSQI 733 (969)
Q Consensus 675 ~~~-~~~-----~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~-~~~~~~~~~-------------~~~~V~ 733 (969)
... ... ...........+++++++ .++++-. .++.|+.|+... ....+.+.. ......
T Consensus 305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~ 383 (409)
T 3hrp_A 305 GSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPY 383 (409)
T ss_dssp ECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEE
T ss_pred eCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCce
Confidence 000 000 000113457899999998 5666767 789999999443 333333321 023578
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 734 SAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 734 sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.++++++|.++++-..++.|+.++++
T Consensus 384 giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 384 DICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 89999998888888888889888763
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.16 E-value=4.4e-09 Score=114.25 Aligned_cols=190 Identities=12% Similarity=0.080 Sum_probs=142.6
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CC
Q 002086 563 SRSHLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EM 638 (969)
Q Consensus 563 s~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~ 638 (969)
+|+++|++++.|+.|.+||.++++.+..+... ..+.++.+.| ++++|+ +.++.|+.||. +++++..+... ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 46899999999999999999999999888543 4789999999 888888 45788999999 67666554433 46
Q ss_pred EEEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 639 VTAACYTPDGQNALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~-dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
+.++.+.++|+++++.+. ++.|..+|. +++.+....+. .....+......+.+.+++ .++++...++.|..||..
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--TGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC--CSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc--CCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC
Confidence 889999999999999887 788888886 55554433321 1111122234455778887 788888999999999976
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
......... .....++.+.++|.+|++++.++.|..+|..+++
T Consensus 155 -G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 155 -GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp -SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred -CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 444333322 2345577889999999999988899999998844
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.13 E-value=9.4e-09 Score=122.98 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=150.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC--CceEEEEecCCCCEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS--DRLVVDWTDLHEMVTAA 642 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~--~~~~~~~~~~~~~V~sv 642 (969)
+.++++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +.+++...........+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 245 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCcee
Confidence 3566777889999999999999999988777888999999 99999999999999999995 77776666656668899
Q ss_pred EEc----cCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeeeccc--ccCC-CCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 643 CYT----PDGQNALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTK--KKSS-TRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 643 ~fs----pdg~~Lasgs~-dg~I~IwDl~~~~~~~~~~~~~~~~--~~~h-~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
+|+ |+|++++++.. ++.|.|+|..+.+........-... ...| ...+..+.++++++.+++....+|.|.++
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 999 69999887664 5899999999888765433211000 0011 23688899999887777777888999999
Q ss_pred eCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCC
Q 002086 715 DGLDIV-HKFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 715 D~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
|..... ..............+.|+|||++|++++ .++.|.++|+.+++
T Consensus 326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 966432 1122223334566889999999987766 57889999999843
No 200
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.10 E-value=8.9e-09 Score=126.75 Aligned_cols=201 Identities=8% Similarity=0.028 Sum_probs=137.3
Q ss_pred cCCCCEEEEEecC-CcEEEEEeCCC-----cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCe-------
Q 002086 552 GHLDDVLDLSWSR-SHLLLSSSMDK-----TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAK------- 618 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sgs~Dg-----tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~------- 618 (969)
+|...+..++|+| +++|+.++.++ +|++||+.+++.+........+..++|+| +++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 3555688999999 78887766543 89999999999876442223377899999 9999999888766
Q ss_pred ---------EEEEeCCCce---EEEEec--CCCCEEEEEEccCCCEEEEEeC-----CCcEEEEEcCC------Cceeee
Q 002086 619 ---------VRIWSISDRL---VVDWTD--LHEMVTAACYTPDGQNALIGSH-----KGSCRLYSIED------SKLHQL 673 (969)
Q Consensus 619 ---------I~IWDl~~~~---~~~~~~--~~~~V~sv~fspdg~~Lasgs~-----dg~I~IwDl~~------~~~~~~ 673 (969)
|++|++.+++ .+.... +...+..+.|+|||++|+.++. +..|++||+.+ +... .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-W 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-C
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-e
Confidence 9999998765 222222 3455789999999999988765 56899999976 4210 0
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC---CcEEEEeCCcce----EEEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD---SRIRILDGLDIV----HKFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D---g~I~IwD~~~~~----~~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
..+ ..+...+.. .|+|++..+++.+..+ +.|++||..... ..+..+.....+..++|++++.++++
T Consensus 280 ~~l------~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 280 VKL------IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp EEE------ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred EEe------eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 111 122333443 4788885455554433 369999976532 33333333235778999988888899
Q ss_pred EeCCCc--EEEEEcCCC
Q 002086 747 ASEDSQ--VYVWKREEH 761 (969)
Q Consensus 747 gs~Dg~--I~IWdl~t~ 761 (969)
...|+. |++|++.++
T Consensus 353 ~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATG 369 (710)
T ss_dssp EEETTEEEEEEEETTTC
T ss_pred EEECCEEEEEEEECCCC
Confidence 988985 566676553
No 201
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.10 E-value=2.4e-08 Score=109.49 Aligned_cols=235 Identities=9% Similarity=0.075 Sum_probs=155.7
Q ss_pred eEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..|..+.....+..|+++|+ ++++...++.|..|+. +++..
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~------------------------------------- 79 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD------------------------------------- 79 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-------------------------------------
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-------------------------------------
Confidence 34455666778999999998 6777778899999987 33321
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH-----NDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-----~~~V 597 (969)
.+..+...+..+++.+ ++++++...++.|.+|+.. ++......+ ...+
T Consensus 80 -------------------------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~ 133 (305)
T 3dr2_A 80 -------------------------VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP 133 (305)
T ss_dssp -------------------------EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred -------------------------EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence 1223445678899998 5555444456889999986 664443321 2356
Q ss_pred EEEEEecCCCCEEEE----EEC-------------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC---
Q 002086 598 TCIQFNPMDDDYFIS----GSL-------------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK--- 657 (969)
Q Consensus 598 ~sv~fsp~~~~~L~s----gs~-------------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d--- 657 (969)
..+++.+ ++.++++ |.. .+.|..||..++++.... .......++|+|+++.|+++...
T Consensus 134 ~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 134 NDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC--
T ss_pred CCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcC
Confidence 7899999 8888886 332 256888888777655544 44567889999999988877665
Q ss_pred ---CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeE
Q 002086 658 ---GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQI 733 (969)
Q Consensus 658 ---g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~ 733 (969)
+.|.+|++....+.....+ . .........+++.+++ . |.++..+ .|.+|+.... ...+.. ...+.
T Consensus 212 ~~~~~i~~~~~~~~~l~~~~~~-~----~~~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g~~~~~~~~---~~~~~ 280 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALHDRRHF-A----SVPDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDGQLLGHIPT---PGTAS 280 (305)
T ss_dssp -CCCEEEEEEEETTEEEEEEEE-E----CCSSSCCCSEEECTTS-C-EEECCSS-EEEEECTTSCEEEEEEC---SSCCC
T ss_pred CCCCEEEEEEecCCCccCCeEE-E----ECCCCCCCeEEECCCC-C-EEEecCC-cEEEECCCCCEEEEEEC---CCcee
Confidence 7899999876552111111 1 1123345678899988 4 5555544 5999996432 222222 22478
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 734 SAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 734 sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
+++|+++++.|..++.++ |+.++
T Consensus 281 ~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 281 NCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEEECTTSCEEEEEETTE-EEEEE
T ss_pred EEEEeCCCCEEEEEcCCe-EEEEE
Confidence 899999999888888754 44444
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.10 E-value=7.3e-08 Score=105.18 Aligned_cols=232 Identities=10% Similarity=0.045 Sum_probs=151.4
Q ss_pred ecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 447 IQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 447 L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
+..+..---+..|+++ +.++++...++.|..||..+++...
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-------------------------------------- 49 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-------------------------------------- 49 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------------------------
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------------
Confidence 3344455668899995 4566777778999999988654321
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCeEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH-----NDYVTC 599 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-----~~~V~s 599 (969)
+ .....+.++++++ ++ |+.+. ++.|.+||..+++....... ...+..
T Consensus 50 ------------------------~-~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d 102 (297)
T 3g4e_A 50 ------------------------V-TMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFND 102 (297)
T ss_dssp ------------------------E-ECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred ------------------------E-eCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence 0 1234678899998 55 44454 56899999998876554432 235789
Q ss_pred EEEecCCCCEEEEEEC-----------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEc--
Q 002086 600 IQFNPMDDDYFISGSL-----------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSI-- 665 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~-----------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl-- 665 (969)
++++| +++++++... .+.|..++.. +..............++|+|+++.|++ .+.++.|.+|++
T Consensus 103 i~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~ 180 (297)
T 3g4e_A 103 GKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL 180 (297)
T ss_dssp EEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred EEECC-CCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccC
Confidence 99999 8887665432 2345555543 444444444456789999999987754 556789999997
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe-CCCCEE
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN-ADGKYI 744 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs-pdg~~L 744 (969)
.++.+.....+ ............+++.+++ .++++....+.|.+||..+.............+++++|. ||++.|
T Consensus 181 ~~G~~~~~~~~---~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 181 QTGQISNRRSV---YKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEM 256 (297)
T ss_dssp TTCCEEEEEEE---EECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred CCCcccCcEEE---EECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEE
Confidence 45543221111 0111223567889999988 677777778889999976333222223334568999998 888877
Q ss_pred EEEeC
Q 002086 745 ISASE 749 (969)
Q Consensus 745 aSgs~ 749 (969)
+.++.
T Consensus 257 ~vt~~ 261 (297)
T 3g4e_A 257 YVTCA 261 (297)
T ss_dssp EEEEB
T ss_pred EEEcC
Confidence 65554
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.08 E-value=1.3e-08 Score=115.27 Aligned_cols=267 Identities=15% Similarity=0.067 Sum_probs=169.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|..+++.+.++..-..+ .++++|||++|+.+. .++.|.+||..+++.+..+.....
T Consensus 63 ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g---------- 130 (386)
T 3sjl_D 63 VIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA---------- 130 (386)
T ss_dssp EEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC----------
T ss_pred EEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc----------
Confidence 4477778888888866666 499999999887765 367899999999888764321000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEE
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWD 581 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWD 581 (969)
+. . .....-..+.|+| +++|+++.. ++.|.++|
T Consensus 131 ----------------------------------------~r---~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID 166 (386)
T 3sjl_D 131 ----------------------------------------PR---F-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD 166 (386)
T ss_dssp ----------------------------------------CC---C-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred ----------------------------------------cc---c-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEE
Confidence 00 0 0011223588898 778777764 68999999
Q ss_pred CCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEEec-CC----CCEE-EEEEc-cCCCEEEE
Q 002086 582 METKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDWTD-LH----EMVT-AACYT-PDGQNALI 653 (969)
Q Consensus 582 l~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~-~~----~~V~-sv~fs-pdg~~Las 653 (969)
+.+++.+..+.-.+. ..+.|.....|++.+.||++.+.++.. +++..... .. ..+. ...|. ++|++++
T Consensus 167 ~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~- 242 (386)
T 3sjl_D 167 LEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW- 242 (386)
T ss_dssp TTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred CCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-
Confidence 999999988854332 223353567888999999999999976 55432111 11 1221 24554 5775444
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeecc----cccCCCCCeEEEEEcCCCCceEEEEeC---------CCcEEEEeCCcce
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQT----KKKSSTRKITGFQFSPSNPSEVLVTSA---------DSRIRILDGLDIV 720 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~----~~~~h~~~It~l~fspd~~~~l~sgs~---------Dg~I~IwD~~~~~ 720 (969)
.+.+|.|++.|+.+........+.+.. ........+..+++++++...+++... ...|.++|..+..
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 566899999999876543222222100 011112334457778888444444321 2569999976544
Q ss_pred EEEEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCC
Q 002086 721 HKFRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
....... ...+..|.|++|++ +|++.. .++.|.++|..+++
T Consensus 323 v~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 323 RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 3322221 22567899999997 666654 58999999999843
No 204
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.07 E-value=1.1e-07 Score=105.44 Aligned_cols=226 Identities=11% Similarity=-0.016 Sum_probs=146.4
Q ss_pred CEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 453 SIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 453 ~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
-..+..|+|++ .++++...++.|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-------------------------------------------- 85 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-------------------------------------------- 85 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------------------------------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------------------
Confidence 34678899975 466677678899999988765321
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCeEEEEEecCC
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAH-----NDYVTCIQFNPMD 606 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-----~~~V~sv~fsp~~ 606 (969)
+ .+...+.++.|.++..++.++.+ .|.+||..+++....... ...+.+++++| +
T Consensus 86 ------------------~-~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~ 144 (326)
T 2ghs_A 86 ------------------H-ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-S 144 (326)
T ss_dssp ------------------E-ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-T
T ss_pred ------------------E-ECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-C
Confidence 0 01246788999884444445544 499999998887554422 23588999999 8
Q ss_pred CCEEEEEEC------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeee
Q 002086 607 DDYFISGSL------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG-SHKGSCRLYSIE--DS-KLHQLNQV 676 (969)
Q Consensus 607 ~~~L~sgs~------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~--~~-~~~~~~~~ 676 (969)
++++++... .+.|..++ ++++..+.........++|+|+++.++++ +.++.|.+|++. ++ .......+
T Consensus 145 G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~ 222 (326)
T 2ghs_A 145 GALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF 222 (326)
T ss_dssp SCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE
T ss_pred CCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEE
Confidence 887665542 25566666 56555444434557899999999877655 457899999986 44 32111111
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe-CCCCEEEEEeCC
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN-ADGKYIISASED 750 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs-pdg~~LaSgs~D 750 (969)
.........+..+++.+++ .++++...++.|.+|+..... ..........+.+++|+ ++++.|+.++..
T Consensus 223 ---~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~-~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 223 ---IDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNH-IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ---EECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCE-EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ---EECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCE-EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 0011223456789999988 566666667899999974322 11222233468899998 888877655543
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.07 E-value=2.6e-09 Score=121.32 Aligned_cols=188 Identities=11% Similarity=0.036 Sum_probs=134.1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.++.|++++...+|++|+.|+ ++||++.......... . +.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~-~-------------------~~------------------- 78 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD-S-------------------TP------------------- 78 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS-S-------------------CC-------------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc-c-------------------cc-------------------
Confidence 689999999999999999986 5669987532100000 0 00
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEE-eecCCCeEEEEEecCCCCEEE
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKL-FAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~-~~h~~~V~sv~fsp~~~~~L~ 611 (969)
.++. ....+.+ |+.|+| .+..|+++ .++.|++||+.+...... ..|...+.++.+.+ . .++
T Consensus 79 -----------~~~~-~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~a 140 (388)
T 1xip_A 79 -----------LTFK-WEKEIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLV 140 (388)
T ss_dssp -----------CCCS-EEEECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEE
T ss_pred -----------ccce-EEeeCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEE
Confidence 0011 1223556 999999 77888888 889999999987664443 36788898888876 2 388
Q ss_pred EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc---cCCCCC
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK---KSSTRK 688 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~---~~h~~~ 688 (969)
++..||.|.+||+.++.... +...|+|++|+|+| +++|..||.+++|+...........+...... ..|...
T Consensus 141 v~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~ 215 (388)
T 1xip_A 141 ILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS 215 (388)
T ss_dssp EEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE
T ss_pred EEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCee
Confidence 89999999999999877654 34679999999999 78899999999999887764211112111111 246789
Q ss_pred eEEEEEcCCCCceEEE
Q 002086 689 ITGFQFSPSNPSEVLV 704 (969)
Q Consensus 689 It~l~fspd~~~~l~s 704 (969)
|.+|.|.+++ .++++
T Consensus 216 V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 216 PLSVTILSPQ-DFLAV 230 (388)
T ss_dssp EEEEEESSSS-EEEEE
T ss_pred EEEEEEecCC-eEEEE
Confidence 9999999976 45554
No 206
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.05 E-value=3.4e-08 Score=110.36 Aligned_cols=248 Identities=13% Similarity=0.095 Sum_probs=157.8
Q ss_pred cCEEEEEEeCCCCEEEEEe--CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAG--EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs--~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
..+..|+++++|+++++.. .++.++||.+.++++.. +... .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~-~p~~------------~------------------------ 59 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIP-FPPQ------------S------------------------ 59 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEE-SCCC------------C------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeec-CCCc------------c------------------------
Confidence 7899999999999999864 23446777765554321 1000 0
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe-C-----CCcEEEEECCCCcEEEEeec-------CCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS-M-----DKTVRLWDMETKSCLKLFAH-------NDY 596 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs-~-----DgtV~IWDl~t~~~i~~~~h-------~~~ 596 (969)
....+|...+.++++.+...|+... . ++.|.+||+.+++.+..+.. ...
T Consensus 60 ------------------~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~ 121 (343)
T 2qe8_A 60 ------------------GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSF 121 (343)
T ss_dssp ------------------SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCC
T ss_pred ------------------cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccc
Confidence 0012356789999999844444443 3 58999999999997776632 245
Q ss_pred eEEEEEecCCCCE-EEEEE---CCCeEEEEeCCCceEEEEecC------------------------------CCCEEEE
Q 002086 597 VTCIQFNPMDDDY-FISGS---LDAKVRIWSISDRLVVDWTDL------------------------------HEMVTAA 642 (969)
Q Consensus 597 V~sv~fsp~~~~~-L~sgs---~Dg~I~IWDl~~~~~~~~~~~------------------------------~~~V~sv 642 (969)
+..+++++ ++.. +++-. .++.|.+||+.+++....... ...+..|
T Consensus 122 ~~~v~vd~-~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gi 200 (343)
T 2qe8_A 122 VNDLAVDL-IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGI 200 (343)
T ss_dssp CCEEEEET-TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEE
T ss_pred cceEEEec-CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceeccccee
Confidence 78999997 4444 45544 578999999988776654422 0236889
Q ss_pred EEccCCCEEEEEeCCC-cEEEEEcC---CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC-C
Q 002086 643 CYTPDGQNALIGSHKG-SCRLYSIE---DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG-L 717 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg-~I~IwDl~---~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~-~ 717 (969)
+|+|+|+.|+++...+ .+..++.. .+..... .+.......++......+++++++ .++++...++.|.+||. .
T Consensus 201 a~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 201 VLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA-ELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp EECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH-HHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTT
T ss_pred EeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh-hhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCC
Confidence 9999999888887666 44444432 1110000 000000001223356678999987 78888888899999997 3
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
.....+..........+++|.++|.++++.+..+.+.+|.
T Consensus 279 G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 279 RAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 3222222222345678999999999888887665554444
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.05 E-value=7.8e-09 Score=127.02 Aligned_cols=241 Identities=12% Similarity=0.133 Sum_probs=153.0
Q ss_pred ccccCEEEEEEeCCCCEEEE-----EeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLAS-----AGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaT-----gs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|...|..++|||||++||- |+.+.+|+|||+.+++.+...
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------------------------------- 171 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---------------------------------- 171 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE----------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 46678999999999998883 333468999999988765410
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCC-------------cEEEEECCCCcE--E
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDK-------------TVRLWDMETKSC--L 588 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~Dg-------------tV~IWDl~t~~~--i 588 (969)
+.+. ....++|+.++.|+.++.+. .|++|++.++.. .
T Consensus 172 --------------------------~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 223 (693)
T 3iuj_A 172 --------------------------LKDV--KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR 223 (693)
T ss_dssp --------------------------EEEE--ESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE
T ss_pred --------------------------cCCc--eeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce
Confidence 0000 01234566445666666653 499999988653 3
Q ss_pred EEe---e-cCCCeEEEEEecCCCCEEEEEEC----CCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCCEEEEEeC--
Q 002086 589 KLF---A-HNDYVTCIQFNPMDDDYFISGSL----DAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQNALIGSH-- 656 (969)
Q Consensus 589 ~~~---~-h~~~V~sv~fsp~~~~~L~sgs~----Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~~Lasgs~-- 656 (969)
.++ . |...+..+.|+| ++.+|+.... ...|+++|+.++ ....+..+....... ++++|..|+..+.
T Consensus 224 ~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 224 LVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRD 301 (693)
T ss_dssp EEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTT
T ss_pred EEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCC
Confidence 333 2 345678999999 8887755432 258999999776 556666665555554 6677776665543
Q ss_pred --CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCCcceEEEEeecCCCCe
Q 002086 657 --KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGLDIVHKFRGFRNTSSQ 732 (969)
Q Consensus 657 --dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~~~~~~~~~~~~~~~V 732 (969)
.+.|.++|+.++.......+ ..+...+. .|++++..++++...++ .|++|+................+
T Consensus 302 ~~~~~l~~~d~~~~~~~~~~~l------~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~ 373 (693)
T 3iuj_A 302 APNRRLVTVDAANPGPAHWRDL------IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSV 373 (693)
T ss_dssp CTTCEEEEEETTSCCGGGCEEE------ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEE
T ss_pred CCCCEEEEEeCCCCCccccEEE------ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceE
Confidence 35799999987653111111 22333343 78888744444445555 68889865433222223344567
Q ss_pred EEEEEeCCCCEEEEEeCC----CcEEEEEcCCC
Q 002086 733 ISAAFNADGKYIISASED----SQVYVWKREEH 761 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~D----g~I~IWdl~t~ 761 (969)
..+.+++++..|+....+ +.|+.||+.++
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 777888888776655544 78999999874
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.03 E-value=6.2e-09 Score=127.85 Aligned_cols=194 Identities=11% Similarity=0.061 Sum_probs=133.3
Q ss_pred cCCCCEEEEEecC-CcEEE-----EEeCCCcEEEEECCCCcEEEEeecCCCe--EEEEEecCCCCEEEEEECCCe-----
Q 002086 552 GHLDDVLDLSWSR-SHLLL-----SSSMDKTVRLWDMETKSCLKLFAHNDYV--TCIQFNPMDDDYFISGSLDAK----- 618 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~-----Sgs~DgtV~IWDl~t~~~i~~~~h~~~V--~sv~fsp~~~~~L~sgs~Dg~----- 618 (969)
+|...+..++|+| +++|+ .|+.+.+|++||+.+++.+. ..+...+ ..++|+| ++..|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence 4666788999999 77777 34445789999999998651 1122222 6889999 9999999988776
Q ss_pred --------EEEEeCCCce---EEEEe--cCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeeeccc
Q 002086 619 --------VRIWSISDRL---VVDWT--DLHEMVTAACYTPDGQNALIGSHKG----SCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 619 --------I~IWDl~~~~---~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg----~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
|++|++.++. .+... .+...+..+.|+|+|++|+.++.++ .|++|+..++.....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l-------- 267 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL-------- 267 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE--------
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe--------
Confidence 9999998765 22222 2335788999999999998877665 677776655443221
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEe---CCCcEEEEeCCcce----EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTS---ADSRIRILDGLDIV----HKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs---~Dg~I~IwD~~~~~----~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
..+...+....+ +++. +++.+. .++.|++||..... ..+..+.....+..++|+ ++.++++...|+..+
T Consensus 268 -~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 268 -VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp -EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred -ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 123334555556 6664 555444 35789999975432 333333324457788888 778889999999988
Q ss_pred EEEcC
Q 002086 755 VWKRE 759 (969)
Q Consensus 755 IWdl~ 759 (969)
||.++
T Consensus 344 l~~~~ 348 (695)
T 2bkl_A 344 VRVAT 348 (695)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
No 209
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.02 E-value=1.8e-08 Score=107.33 Aligned_cols=194 Identities=8% Similarity=0.024 Sum_probs=136.9
Q ss_pred CEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 556 DVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
...++++.+ +.+++ +...++.|.+||..+....... .+...+.+|++.+ ++.++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899988 56555 4477899999998765543222 3445788999998 777666655 88999999987765444
Q ss_pred ec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 633 TD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 633 ~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
.. ....+..++++++|+++++...++.|.+|+..+...... .......+.++++++++ .++++...++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------PFTGLNDPDGVAVDNSG-NVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--------CCCSCCSCCCEEECTTC-CEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--------ccccCCCceeEEEeCCC-CEEEEECCCCEE
Confidence 32 225789999999999777777788999997655432211 01223467889999988 566666678899
Q ss_pred EEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 712 RILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 712 ~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
++||................+..++++++|.++++...++.|.+|+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 9999765443332223335678999999998888877789999999865
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.01 E-value=1.9e-08 Score=115.62 Aligned_cols=268 Identities=11% Similarity=0.028 Sum_probs=174.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|+.+++.+.++..-..+ .++++|||++|+.+. .++.|.++|..+++.+..+......
T Consensus 103 VID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~--------- 171 (426)
T 3c75_H 103 VIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP--------- 171 (426)
T ss_dssp EEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC---------
T ss_pred EEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc---------
Confidence 4577888888888866666 899999999877765 4679999999998887643210000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEE
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWD 581 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWD 581 (969)
.+ ........+.|+| +++|+++.. ++.|.+.|
T Consensus 172 --------------------------------------------r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID 206 (426)
T 3c75_H 172 --------------------------------------------RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVD 206 (426)
T ss_dssp --------------------------------------------CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEE
T ss_pred --------------------------------------------cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEE
Confidence 00 0001123467888 778888764 68999999
Q ss_pred CCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe----cC-CCC-EEEEEEccCCCEEEEEe
Q 002086 582 METKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT----DL-HEM-VTAACYTPDGQNALIGS 655 (969)
Q Consensus 582 l~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~-~~~-V~sv~fspdg~~Lasgs 655 (969)
+.+++.+..+.-.+. ....|.....+++.+.||++.+.++.++++.... .. ..+ ...+.|.+++..++...
T Consensus 207 ~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s 283 (426)
T 3c75_H 207 LEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT 283 (426)
T ss_dssp TTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB
T ss_pred CCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe
Confidence 999999888754332 3344423467788888999999998666655321 11 111 12357899999888888
Q ss_pred CCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe---------CCCcEEEEeCCcceEE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS---------ADSRIRILDGLDIVHK 722 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs---------~Dg~I~IwD~~~~~~~ 722 (969)
..+.+.+.|+..........+.+... ..........++++|++...+++.. ..+.|.++|..+....
T Consensus 284 ~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv 363 (426)
T 3c75_H 284 YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI 363 (426)
T ss_dssp TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE
Confidence 88999999997665432222111100 0001112223689998854444433 1357999997654333
Q ss_pred EEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCC
Q 002086 723 FRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
-.... ......+.|+|||+ +|++.. .++.|.++|+.+.+
T Consensus 364 ~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 364 NKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 22211 12366899999999 888888 59999999999843
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.94 E-value=4.3e-07 Score=99.03 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=135.3
Q ss_pred ccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 551 IGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 551 ~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
..+..-..+..|++ +.++++...++.|..||..+++. ..+.....+.++++++ +++++++ . ++.|.+||..+++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCc
Confidence 33444566888988 45666777789999999998876 4556678899999999 8885554 4 5689999999887
Q ss_pred EEEEecC-----CCCEEEEEEccCCCEEEEEeCC---------CcEEEEEcCC-CceeeeeeeeecccccCCCCCeEEEE
Q 002086 629 VVDWTDL-----HEMVTAACYTPDGQNALIGSHK---------GSCRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 629 ~~~~~~~-----~~~V~sv~fspdg~~Lasgs~d---------g~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
...+... ...+..++++|+|+++++.... ....||.+.. ++.... .........++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---------~~~~~~pngi~ 155 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY---------FDQVDISNGLD 155 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE---------EEEESBEEEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE---------eeccccccceE
Confidence 6554432 2347899999999976654322 2344555443 222111 11223467899
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCC--cce----EEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGL--DIV----HKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~--~~~----~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|+|++..++++.+.++.|.+|+.. ... ..+... ........++++++|.+.++....+.|.+||.+++
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 999985556666778999999852 211 112211 22345678999999998888888889999999873
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.93 E-value=2e-07 Score=101.32 Aligned_cols=200 Identities=7% Similarity=0.094 Sum_probs=135.9
Q ss_pred eccCCCCEEEEEecC-CcEEEE-------EeCCCcEEEEECCCCcEEEEee-----cCCCeEEEEEecCCCCEEEEEECC
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLS-------SSMDKTVRLWDMETKSCLKLFA-----HNDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~S-------gs~DgtV~IWDl~t~~~i~~~~-----h~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
+........+++|.+ +.++++ +..++.|.+||..+++...... +...+.++++++ ++..|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMR 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETT
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEECC
Confidence 344455678999998 566666 5778999999998888765433 557799999998 62344444445
Q ss_pred CeEEEEeCCCceEEEE-ecC-----CCCEEEEEEccCCCEEEEEeCC---------------CcEEEEEcCCCceeeeee
Q 002086 617 AKVRIWSISDRLVVDW-TDL-----HEMVTAACYTPDGQNALIGSHK---------------GSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~-~~~-----~~~V~sv~fspdg~~Lasgs~d---------------g~I~IwDl~~~~~~~~~~ 675 (969)
+.|.+||.. ++...+ ... ...+..++++++|+++++...+ +.|..|+.. ++.....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~- 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD- 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-
Confidence 579999998 776554 321 1347899999999887776655 567777765 4432211
Q ss_pred eeecccccCCCCCeEEEEEc----CCCCceEEEEeCCCcEEEEeCC-cce----EEEEeec-CC-CCeEEEEEeCCCCEE
Q 002086 676 VDFQTKKKSSTRKITGFQFS----PSNPSEVLVTSADSRIRILDGL-DIV----HKFRGFR-NT-SSQISAAFNADGKYI 744 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fs----pd~~~~l~sgs~Dg~I~IwD~~-~~~----~~~~~~~-~~-~~V~sl~fspdg~~L 744 (969)
.+......++|+ |++..++++...++.|++||.. ... ..+.... +. .....++++++|.++
T Consensus 169 --------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 169 --------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp --------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred --------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 112346788999 9873344445678899999854 211 1122111 11 457789999999999
Q ss_pred EEEeCCCcEEEEEcCCC
Q 002086 745 ISASEDSQVYVWKREEH 761 (969)
Q Consensus 745 aSgs~Dg~I~IWdl~t~ 761 (969)
++...++.|.+||..++
T Consensus 241 v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGG 257 (314)
T ss_dssp EEEETTTEEEEECTTCB
T ss_pred EEEcCCCEEEEEcCCCC
Confidence 98888999999998753
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.93 E-value=6.6e-08 Score=109.71 Aligned_cols=133 Identities=9% Similarity=0.012 Sum_probs=106.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.+.+ |+.|+| |+++|+++ .++.|++||+.+.....
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~----------------------------------------- 120 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFR----------------------------------------- 120 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEE-----------------------------------------
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccC-----------------------------------------
Confidence 4667 999999 99999999 88999999987533111
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~ 608 (969)
....|...|.++.+.+.+ +++++.||.|.+||+.++.... +...|+|++|+| ++
T Consensus 121 --------------------~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG- 174 (388)
T 1xip_A 121 --------------------TVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ- 174 (388)
T ss_dssp --------------------EEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE-
T ss_pred --------------------ccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc-
Confidence 223455667777777643 8889999999999999888754 456899999999 66
Q ss_pred EEEEEECCCeEEEEeCCCceE--EEEe----------cCCCCEEEEEEccCCCEEEE
Q 002086 609 YFISGSLDAKVRIWSISDRLV--VDWT----------DLHEMVTAACYTPDGQNALI 653 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~--~~~~----------~~~~~V~sv~fspdg~~Las 653 (969)
++.|..||+|++|+...+.+ ...+ .+...|.+|+|.+++.++++
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 78899999999999988875 3333 25678999999999988886
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.92 E-value=8.8e-07 Score=100.37 Aligned_cols=239 Identities=8% Similarity=-0.037 Sum_probs=148.5
Q ss_pred EEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEeecC--------CCeEEEEEecCCCCEEEEEEC--CC
Q 002086 559 DLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFAHN--------DYVTCIQFNPMDDDYFISGSL--DA 617 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~h~--------~~V~sv~fsp~~~~~L~sgs~--Dg 617 (969)
.+.++| +++|+.+. .++.|.+||..+.+.+..+.-. .....++|+| ++++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 688998 67777765 3678999999998888766322 3456899999 9999998874 57
Q ss_pred eEEEEeCCCceEEEE-ecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC-eEEEEE
Q 002086 618 KVRIWSISDRLVVDW-TDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK-ITGFQF 694 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~-It~l~f 694 (969)
.|.++| .+++++.. ...... +.+.|++ ..+++.+.||.+.++|. +++........ ... ....+ .....+
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~--~~~-~~~~p~~~~~~~ 220 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG--AML-TAAQNLLTQPAQ 220 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc--ccc-cCCcceeeccee
Confidence 899999 99988776 655443 4455655 45567778999999999 77654221100 000 11112 223456
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCcce----EEEEeec--------CCCCeEEEEEeCCCCEEEEEeC----------CCc
Q 002086 695 SPSNPSEVLVTSADSRIRILDGLDIV----HKFRGFR--------NTSSQISAAFNADGKYIISASE----------DSQ 752 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD~~~~~----~~~~~~~--------~~~~V~sl~fspdg~~LaSgs~----------Dg~ 752 (969)
.+++..++++ +..+.+.+.|..... ..+.... .......+.++||++.|+.+.. .+.
T Consensus 221 ~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 221 ANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred EecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6666444444 467899999964321 1111100 1122334778998888777653 346
Q ss_pred EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCC-Cccc
Q 002086 753 VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKE-GSPA 831 (969)
Q Consensus 753 I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~-~i~~ 831 (969)
|.++|+.+.+.+ .... .+..+....++|++. .++.
T Consensus 300 V~VID~~t~~vv------~~i~--------------------------------------~g~~p~~i~~s~Dg~~~l~v 335 (373)
T 2mad_H 300 VTSVTGLVGQTS------SQIS--------------------------------------LGHDVDAISVAQDGGPDLYA 335 (373)
T ss_pred EEEEECCCCEEE------EEEE--------------------------------------CCCCcCeEEECCCCCeEEEE
Confidence 888888773211 1110 011233445677877 5555
Q ss_pred cC-CCCccccCCCCCCccccC
Q 002086 832 GH-SRRLLPPLPKKTNKVERV 851 (969)
Q Consensus 832 ~~-~~~~L~~~~~~s~~~~~~ 851 (969)
.. .+..+..+...+.+..++
T Consensus 336 ~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 336 LSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EcCCCCeEEEEECCCCCEEee
Confidence 55 467788888777766655
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.85 E-value=1.7e-07 Score=115.89 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=126.6
Q ss_pred CCCCEEEEEecC-CcEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCe--------
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMD-----KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAK-------- 618 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~D-----gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~-------- 618 (969)
|...+..+.|+| +++|+.++.+ .+|++||+.+++.+....+...+..++|+| + +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 444678899999 7788776644 469999999999876533333346789999 7 88888776654
Q ss_pred ------EEEEeCCCce---EEEEecC--CCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCC--c-eeeeeeeeec
Q 002086 619 ------VRIWSISDRL---VVDWTDL--HEMVTAACYTPDGQNALIGSHKG-----SCRLYSIEDS--K-LHQLNQVDFQ 679 (969)
Q Consensus 619 ------I~IWDl~~~~---~~~~~~~--~~~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~~--~-~~~~~~~~~~ 679 (969)
|++|++.++. .+..... ...+..+.|+|||++|+..+.++ .|++||+.++ + ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l------ 312 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL------ 312 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE------
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe------
Confidence 8999997764 2222222 23588999999999998877544 8999999876 3 2111
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeC----CCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSA----DSRIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~----Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
..+...+.... +|++ ..|+..+. ++.|++||.... ...+. ..+...+..++|+ ++.++++...|+.
T Consensus 313 ---~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 313 ---IPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp ---ECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred ---cCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 12223334443 4777 45555544 345999997652 12222 2233345677787 6678888899998
Q ss_pred EEEEEcC
Q 002086 753 VYVWKRE 759 (969)
Q Consensus 753 I~IWdl~ 759 (969)
.+||.++
T Consensus 386 ~~l~~~~ 392 (741)
T 1yr2_A 386 SQVLAFD 392 (741)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8777664
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.85 E-value=2.1e-08 Score=113.31 Aligned_cols=260 Identities=10% Similarity=-0.070 Sum_probs=159.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|..+++.+.++..-..+ .+.|+|||++|+.+. .+++|.+||+.+++.+..+......-
T Consensus 50 vID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-------- 119 (368)
T 1mda_H 50 VSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-------- 119 (368)
T ss_dssp EEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--------
T ss_pred EEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--------
Confidence 5688888899998876677 899999999888876 37899999999998887543110000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEE--
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRL-- 579 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~I-- 579 (969)
...+ .....+.++| +++|+++.. +..|.+
T Consensus 120 --------------------------------------------~~~g--~~P~~ia~SpDGk~lyVan~~~~~~v~V~~ 153 (368)
T 1mda_H 120 --------------------------------------------FSVG--PRVHIIGNCASSACLLFFLFGSSAAAGLSV 153 (368)
T ss_dssp --------------------------------------------CCBS--CCTTSEEECTTSSCEEEEECSSSCEEEEEE
T ss_pred --------------------------------------------cccC--CCcceEEEcCCCCEEEEEccCCCCeEEEEE
Confidence 0000 1123578898 777887764 467888
Q ss_pred EECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-----ceEEEE----ec-CCCCEEEEEEccCCC
Q 002086 580 WDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-----RLVVDW----TD-LHEMVTAACYTPDGQ 649 (969)
Q Consensus 580 WDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-----~~~~~~----~~-~~~~V~sv~fspdg~ 649 (969)
+|+.+ +..+.-.+. +.+.|.....+++.+.||.+.+.|+.+ +++... .. ...+. . .+++.
T Consensus 154 iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~ 223 (368)
T 1mda_H 154 PGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPG 223 (368)
T ss_dssp TTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTT
T ss_pred Echhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCC
Confidence 99987 444432221 223342345677778899999999987 443311 11 12233 3 66667
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe---C-----CCcEEEEeCC
Q 002086 650 NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS---A-----DSRIRILDGL 717 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs---~-----Dg~I~IwD~~ 717 (969)
.++..+. +.+.+.|+..........+.+... ..........++|+|++...+++.. . ++.+.++|..
T Consensus 224 ~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~ 302 (368)
T 1mda_H 224 MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC
Confidence 7666666 999999997643222111111100 0001111122679999854444433 2 2456699976
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
+......... ......+.|+|||+ ++++.. .++.|.++|+.+.+
T Consensus 303 t~~vv~~i~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 303 VGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCeEEEEEEC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 5443222211 12467899999997 566666 59999999999843
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.84 E-value=3e-07 Score=105.54 Aligned_cols=200 Identities=9% Similarity=0.044 Sum_probs=142.0
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC--eEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA--KVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg--~I~IWDl~~~~~~~ 631 (969)
.....|+|++ +.++++...++.|++||..++............. ++|++ +++.|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4578899998 5666666677999999999888777665444444 99999 888888888766 79999987654432
Q ss_pred Ee----c-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC--eEEEEEcCCCCceEEE
Q 002086 632 WT----D-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK--ITGFQFSPSNPSEVLV 704 (969)
Q Consensus 632 ~~----~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~--It~l~fspd~~~~l~s 704 (969)
.. . ....+.+++++|++..|+++..++.|+.||..++.......... ...... ...++|+|++..++++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~----~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL----SGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC----CSCCCCSSCCEEEEETTTTEEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc----cCCCCCCccccEEEeCCCCEEEEE
Confidence 22 2 34567889999965566667778899999998776432211100 111111 2399999976567777
Q ss_pred EeCCCcEEEEeCCcceEEEEeec-------------CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 705 TSADSRIRILDGLDIVHKFRGFR-------------NTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~~~~~~~~-------------~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
-..++.|+.|+.......+.+.. .......++|+++|.++++-. .++.|+.|++.+
T Consensus 285 d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp ETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred eCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 77889999999665444443332 023467899999999888877 889999999765
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.79 E-value=5.2e-07 Score=102.05 Aligned_cols=233 Identities=11% Similarity=0.055 Sum_probs=152.1
Q ss_pred EEeCCCCEEEEEeC-----CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 458 KFSLDARFLASAGE-----DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 458 ~fSpDg~~LaTgs~-----DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
...|+++.++.... ++.|.+.|..+++.+..+.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~------------------------------------------ 76 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID------------------------------------------ 76 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE------------------------------------------
Confidence 34688887777765 6899999999988876432
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEeec--------
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFAH-------- 593 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~h-------- 593 (969)
.-..+ . +.++| +++|+++. .++.|.+||..+++.+..+.-
T Consensus 77 -------------------vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 77 -------------------GGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp -------------------ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred -------------------CCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 11223 3 88998 66666654 467899999999999887732
Q ss_pred CCCeEEEEEecCCCCEEEEEEC--CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-Cce
Q 002086 594 NDYVTCIQFNPMDDDYFISGSL--DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-SKL 670 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~ 670 (969)
......++|+| ++++++++.. ++.|.++|+.+++++........ ...+....+.+++.+.||.+.+.++.. ++.
T Consensus 136 g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 136 GTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp SCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 22567899999 9998888864 68999999999998877765442 223333456777888899999999976 554
Q ss_pred eeeeeeeecccccCCCCCeE-EEEEc-CCCCceEEEEeCCCcEEEEeCCcce----EEEEeec--------CCCCeEEEE
Q 002086 671 HQLNQVDFQTKKKSSTRKIT-GFQFS-PSNPSEVLVTSADSRIRILDGLDIV----HKFRGFR--------NTSSQISAA 736 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It-~l~fs-pd~~~~l~sgs~Dg~I~IwD~~~~~----~~~~~~~--------~~~~V~sl~ 736 (969)
..... ........++. ...|. +++ .++..+.++.|++.|..... ..+..+. .......++
T Consensus 213 ~~~~~----~~~~~~~~~~~~~~~~~~~dG--~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 213 EITHT----EVFHPEDEFLINHPAYSQKAG--RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp EEEEC----CCCSCTTSCBCSCCEEETTTT--EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred EEeec----ceeccccccccccceeEcCCC--cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 22110 00011112222 23554 555 34446668999999975322 1121000 011223467
Q ss_pred EeCCCCEEEEEeC----------CCcEEEEEcCCCC
Q 002086 737 FNADGKYIISASE----------DSQVYVWKREEHR 762 (969)
Q Consensus 737 fspdg~~LaSgs~----------Dg~I~IWdl~t~~ 762 (969)
++++++.|+.... .+.|.+.|+.+.+
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 7999988887643 2468899998843
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.78 E-value=4.2e-06 Score=92.55 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=129.6
Q ss_pred CCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 555 DDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 555 ~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
.-..+..|++ +.++++...++.|..||..+++.. .+.....+.+++|.+ ++.++++. .+ .|.+||..++++..+
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 3456788998 456667777899999999987654 345567899999999 77766654 44 499999988876554
Q ss_pred ecC-----CCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 633 TDL-----HEMVTAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 633 ~~~-----~~~V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
... ...+..++++|+|+++++... .+.|..++ +++..... ........++|+|++..+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~---------~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF---------ADISIPNSICFSPDGTTG 193 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE---------EEESSEEEEEECTTSCEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee---------CCCcccCCeEEcCCCCEE
Confidence 432 135889999999997665442 24555565 44432211 112346789999998445
Q ss_pred EEEEeCCCcEEEEeCC--cc-e----EEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 702 VLVTSADSRIRILDGL--DI-V----HKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~--~~-~----~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+++.+.++.|.+|+.. .. . ..+... ........++++++|.+.++...++.|.+|+..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 5555667899999964 22 1 222222 123456789999999988887777899999873
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.70 E-value=3e-06 Score=96.79 Aligned_cols=190 Identities=13% Similarity=0.125 Sum_probs=127.7
Q ss_pred EEEEecCCcEEEEEeCC------CcEEEEECCCCcEEEEeecC----CCeEEEEEecCCCCEEEEEE-------------
Q 002086 558 LDLSWSRSHLLLSSSMD------KTVRLWDMETKSCLKLFAHN----DYVTCIQFNPMDDDYFISGS------------- 614 (969)
Q Consensus 558 ~~l~fs~~~~L~Sgs~D------gtV~IWDl~t~~~i~~~~h~----~~V~sv~fsp~~~~~L~sgs------------- 614 (969)
..+...|+.+++++..+ +.|.+.|..+.+.+..+... ..-+.+-|+| +++.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45566674466666555 78999999999999988422 2344678899 888888874
Q ss_pred ------CCCeEEEEeCCCceEEEEecCC---CCEEEEEE--ccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeee
Q 002086 615 ------LDAKVRIWSISDRLVVDWTDLH---EMVTAACY--TPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 615 ------~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~f--spdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~ 677 (969)
.+.+|.+||+.+++++..+... .....+.| +|+++++.+++. +++|.+|....+.......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3689999999998877766654 34556666 999999888774 668888777665543333322
Q ss_pred ecccc-cC-----------CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecC--------------
Q 002086 678 FQTKK-KS-----------STRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRN-------------- 728 (969)
Q Consensus 678 ~~~~~-~~-----------h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~-------------- 728 (969)
+.... .. .......|.+++++..++++.-..+.|.+||+.. ....-.....
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccC
Confidence 21110 00 0245788999999955555555678999999642 1211111111
Q ss_pred CCCeEEEEEeCCCCEEEEEe
Q 002086 729 TSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs 748 (969)
...-..+.++|||++|+++.
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 01246789999999999998
No 221
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.67 E-value=5e-06 Score=89.24 Aligned_cols=213 Identities=10% Similarity=0.034 Sum_probs=145.2
Q ss_pred cceeeeEecccccC--EEEEEEeCCCCEEEEEeC--CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 440 ALHLCQEIQAHEGS--IWTIKFSLDARFLASAGE--DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 440 ~~~l~~~L~gH~~~--I~~l~fSpDg~~LaTgs~--DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
+.+.++++. |... ...|.|++|+.++++.+. ++.|++.|+.+++.+......
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~----------------------- 63 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD----------------------- 63 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-----------------------
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-----------------------
Confidence 345666664 5543 689999999876666654 689999999999987743210
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecC-
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHN- 594 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~- 594 (969)
. ......+++..+...++.-.++.|.++|..+.+.+..+...
T Consensus 64 ------------------------------------~-~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~ 106 (266)
T 2iwa_A 64 ------------------------------------D-SYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQM 106 (266)
T ss_dssp ------------------------------------T-TCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCS
T ss_pred ------------------------------------C-CcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCC
Confidence 0 00112355554455556667899999999999999988544
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
..-.. +.+ ++..++++..++.|.++|..+.++....... ..++.+.|. +|..++....++.|.+.|..++
T Consensus 107 ~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 107 KDGWG--LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp SSCCE--EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred CCeEE--EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence 33333 445 5666666667899999999998766544422 236788888 6755555556889999999999
Q ss_pred ceeeeeeeeec-----ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 669 KLHQLNQVDFQ-----TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 669 ~~~~~~~~~~~-----~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
+......+.-. ...........+|+|+|++..+++++.....|+..++.
T Consensus 183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 88665543210 01112234678999999987778888888888888743
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.58 E-value=6.8e-06 Score=100.68 Aligned_cols=189 Identities=12% Similarity=0.112 Sum_probs=123.1
Q ss_pred CCCcEEEEECCCCcEEEEeecC--------------------------------CCeEEEEEecCCCCEEEEEECCCe--
Q 002086 573 MDKTVRLWDMETKSCLKLFAHN--------------------------------DYVTCIQFNPMDDDYFISGSLDAK-- 618 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~--------------------------------~~V~sv~fsp~~~~~L~sgs~Dg~-- 618 (969)
.++.|+.||..+|+.+-.+... .....++++| +..+++.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence 3789999999999988766311 0112578888 7788888887764
Q ss_pred -----------------EEEEeCCCceEEEEecC--C--------CCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCC
Q 002086 619 -----------------VRIWSISDRLVVDWTDL--H--------EMVTAACYTPDGQ---NALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 619 -----------------I~IWDl~~~~~~~~~~~--~--------~~V~sv~fspdg~---~Lasgs~dg~I~IwDl~~~ 668 (969)
|..||..+++.+-.+.. . ..+....+..+|+ .++.++.+|.++++|..++
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 99999999987754332 1 1222233334665 7888999999999999999
Q ss_pred ceeeeeeeeec---cc-----------------ccCCC-----------CCeEEEEEcCCCCceEEEEeC----------
Q 002086 669 KLHQLNQVDFQ---TK-----------------KKSST-----------RKITGFQFSPSNPSEVLVTSA---------- 707 (969)
Q Consensus 669 ~~~~~~~~~~~---~~-----------------~~~h~-----------~~It~l~fspd~~~~l~sgs~---------- 707 (969)
+++....+... .. ..... ..-..++|+|+. .++++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeecc
Confidence 88633221100 00 00000 011236788876 45555421
Q ss_pred -----------------------------------CCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 708 -----------------------------------DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 708 -----------------------------------Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
++.|+.||..+.........+ .......+...+.+|+.|+.||.
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~ 497 (689)
T 1yiq_A 419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGR 497 (689)
T ss_dssp SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE
T ss_pred ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCc
Confidence 377999998776655554332 22333456677889999999999
Q ss_pred EEEEEcCCCCcc
Q 002086 753 VYVWKREEHRNA 764 (969)
Q Consensus 753 I~IWdl~t~~~~ 764 (969)
|+.||.++++.+
T Consensus 498 l~a~D~~tG~~l 509 (689)
T 1yiq_A 498 VIAYAADTGEKL 509 (689)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCccc
Confidence 999999995443
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.55 E-value=3.8e-06 Score=91.72 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=131.4
Q ss_pred ceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+..+..+........|++ ++ +++++..++.|..|+. +++......+...+..+++++ +++++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEEC
Confidence 4445666667788999998 55 6777778899999998 455443345667899999999 888666655668899999
Q ss_pred CCCceEEEEecC-----CCCEEEEEEccCCCEEEE----EeC-------------CCcEEEEEcCCCceeeeeeeeeccc
Q 002086 624 ISDRLVVDWTDL-----HEMVTAACYTPDGQNALI----GSH-------------KGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 624 l~~~~~~~~~~~-----~~~V~sv~fspdg~~Las----gs~-------------dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
.. +....+... ...+..+++.++|.++++ |.. .+.|+.||..+++.....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------- 185 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------- 185 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-------
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-------
Confidence 86 554433221 134678999999998876 332 256777777666543321
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCC------CcEEEEeCCcce-EEEEee--cCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSAD------SRIRILDGLDIV-HKFRGF--RNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~D------g~I~IwD~~~~~-~~~~~~--~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
.......++|+|++ ..|+++... +.|++|+..... .....+ ........++++++|++.++. .+ .
T Consensus 186 ---~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-g 259 (305)
T 3dr2_A 186 ---DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-G 259 (305)
T ss_dssp ---EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-E
T ss_pred ---cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-c
Confidence 12346789999998 555555444 789999854321 111111 122334568899999955544 44 4
Q ss_pred EEEEEcC
Q 002086 753 VYVWKRE 759 (969)
Q Consensus 753 I~IWdl~ 759 (969)
|++|+..
T Consensus 260 v~~~~~~ 266 (305)
T 3dr2_A 260 VCVFDSD 266 (305)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999874
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.55 E-value=3.4e-06 Score=96.84 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=124.7
Q ss_pred EEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEeec--------CCCeEEEEEecCCCCEEEEEEC--CC
Q 002086 559 DLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFAH--------NDYVTCIQFNPMDDDYFISGSL--DA 617 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~h--------~~~V~sv~fsp~~~~~L~sgs~--Dg 617 (969)
.+.++| +++|+++. .++.|.++|..+++.+..+.- ......+.|+| ++++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 688898 66666664 477999999999999887643 23456889999 9999998874 57
Q ss_pred eEEEEeCCCceEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe-EEEEEc
Q 002086 618 KVRIWSISDRLVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI-TGFQFS 695 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I-t~l~fs 695 (969)
.|.+.|+.+++++..+..... ....|++ ..+++.+.||.+.+.++.+++...... ........++ ..+.|.
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----EVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----CCCSCTTSCBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----eeeccCCCceeeEeeec
Confidence 899999999998876665442 2334443 566677788888888885555432110 0001111111 235678
Q ss_pred CCCCceEEEEeCCCcEEEEeCCcceEE----EEeec--------CCCCeEEEEEeCCCCEEEEEeC----------CCcE
Q 002086 696 PSNPSEVLVTSADSRIRILDGLDIVHK----FRGFR--------NTSSQISAAFNADGKYIISASE----------DSQV 753 (969)
Q Consensus 696 pd~~~~l~sgs~Dg~I~IwD~~~~~~~----~~~~~--------~~~~V~sl~fspdg~~LaSgs~----------Dg~I 753 (969)
+++ ..++..+..+.|++.|....... +.... .......++|+||+++|+.... ++.|
T Consensus 274 ~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 274 LRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp TTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred CCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence 887 45555567889999996432211 11000 0111123689999987777642 3479
Q ss_pred EEEEcCCC
Q 002086 754 YVWKREEH 761 (969)
Q Consensus 754 ~IWdl~t~ 761 (969)
.+.|+.+.
T Consensus 353 sVID~~T~ 360 (426)
T 3c75_H 353 VVLNAETG 360 (426)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99999884
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.52 E-value=3.4e-06 Score=103.21 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=124.9
Q ss_pred CCcEEEEECCCCcEEEEeecCCC---------------------------------eEEEEEecCCCCEEEEEECCC---
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDY---------------------------------VTCIQFNPMDDDYFISGSLDA--- 617 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~---------------------------------V~sv~fsp~~~~~L~sgs~Dg--- 617 (969)
++.|+.||..+|+.+..+..... ...++++| +.++++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 79999999999999877632111 13578888 778888877664
Q ss_pred ----------------eEEEEeCCCceEEEEecC--C--------CCEEEEEEccCC---CEEEEEeCCCcEEEEEcCCC
Q 002086 618 ----------------KVRIWSISDRLVVDWTDL--H--------EMVTAACYTPDG---QNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 618 ----------------~I~IWDl~~~~~~~~~~~--~--------~~V~sv~fspdg---~~Lasgs~dg~I~IwDl~~~ 668 (969)
.|..+|..+++++-.+.. + .....+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999987754332 1 123334444577 67889999999999999999
Q ss_pred ceeeeeeeeecc---cccCCCCC------------------------eEEEEEcCCCCceEEEEeC--------------
Q 002086 669 KLHQLNQVDFQT---KKKSSTRK------------------------ITGFQFSPSNPSEVLVTSA-------------- 707 (969)
Q Consensus 669 ~~~~~~~~~~~~---~~~~h~~~------------------------It~l~fspd~~~~l~sgs~-------------- 707 (969)
+++....+.... ........ -..++|+|+. .++++...
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeeccccccc
Confidence 886543321100 00000000 1256788877 45555432
Q ss_pred -----------------------------CCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 708 -----------------------------DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 708 -----------------------------Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.+.|..||..+........ +...+....+..++.+++.++.||.|++||+
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 2779999987766555443 2233445556778889999999999999999
Q ss_pred CCCCcc
Q 002086 759 EEHRNA 764 (969)
Q Consensus 759 ~t~~~~ 764 (969)
.+++.+
T Consensus 506 ~tG~~l 511 (677)
T 1kb0_A 506 ATGEKL 511 (677)
T ss_dssp TTCCEE
T ss_pred CCCcee
Confidence 995443
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.50 E-value=1e-07 Score=107.93 Aligned_cols=219 Identities=11% Similarity=0.015 Sum_probs=114.6
Q ss_pred CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeee
Q 002086 462 DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541 (969)
Q Consensus 462 Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 541 (969)
++.+|++++.|+.|..||..+|+.+-.+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 577899999999999999999988764321
Q ss_pred cCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeEE-EEEecCCCCEEEEEECCC
Q 002086 542 LSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVTC-IQFNPMDDDYFISGSLDA 617 (969)
Q Consensus 542 ~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~s-v~fsp~~~~~L~sgs~Dg 617 (969)
+.+.+..+.. +..+++++.|+.|+.||..+++.+..+... ..+.+ ..+. .+..+++++.|+
T Consensus 38 -------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg 102 (369)
T 2hz6_A 38 -------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQD 102 (369)
T ss_dssp -------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEE
T ss_pred -------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCC
Confidence 0011111112 456777789999999999998876655321 11110 0111 345788888899
Q ss_pred eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 618 KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
.|+.||..+++.+....... ...++|++..+++++.++.|+.||..+++......... .....+..+
T Consensus 103 ~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----------~~~~~~~~~ 169 (369)
T 2hz6_A 103 IWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD----------YAASLPEDD 169 (369)
T ss_dssp EEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE----------ECCBCCCCC
T ss_pred EEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc----------ccCccccCC
Confidence 99999999998775544433 23456788899999999999999999987644322110 011122221
Q ss_pred C--CceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEE-EEEeCCCCEE----EEEeCCCcEEEEEcCCC
Q 002086 698 N--PSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQIS-AAFNADGKYI----ISASEDSQVYVWKREEH 761 (969)
Q Consensus 698 ~--~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~s-l~fspdg~~L----aSgs~Dg~I~IWdl~t~ 761 (969)
. ...+++++.++.|+.||..+........ ...++.. ..++++|... +.+ ++.++++|..++
T Consensus 170 ~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG 237 (369)
T 2hz6_A 170 VDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSG 237 (369)
T ss_dssp TTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHH
T ss_pred ccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccceeeeehhcC
Confidence 1 1367788999999999977655544433 2333432 3444555432 111 334555555443
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.48 E-value=1.9e-05 Score=88.59 Aligned_cols=180 Identities=8% Similarity=0.025 Sum_probs=118.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE------EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT------CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM 638 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~------sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~ 638 (969)
+..++.++.++.|..+|..+++.+..+.....+. .... .+..++.+..++.|..+|..+++.+........
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 4678888999999999999999887775443332 2222 246788888899999999999887654433211
Q ss_pred E-----E---EEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 639 V-----T---AACYTP--DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 639 V-----~---sv~fsp--dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
. . .+...| .+..+++++.++.+..+|..+++...... ......+... + ..+++++.+
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----------~~~~~~~~~~--~-~~l~~~~~~ 286 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE----------LGSVNDFIVD--G-NRIYLVDQN 286 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC----------CCCEEEEEEE--T-TEEEEEETT
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc----------CCCCCCceEE--C-CEEEEEcCC
Confidence 0 0 010111 35678888889999999999988653321 1223444443 3 578888899
Q ss_pred CcEEEEeCCcceEEEEeec-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 709 SRIRILDGLDIVHKFRGFR-NTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~-~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+.|+.+|..+......... ....+..... .+..|+.++.+|.|+++|..+++
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 9999999776655544331 1112222222 35688899999999999998843
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.48 E-value=3e-06 Score=103.98 Aligned_cols=195 Identities=17% Similarity=0.159 Sum_probs=124.9
Q ss_pred cCCCCEEEEEecC-CcEEEEE-----eCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC--------
Q 002086 552 GHLDDVLDLSWSR-SHLLLSS-----SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA-------- 617 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sg-----s~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg-------- 617 (969)
+|...+..++|+| +++|+.+ +...+|++||+.+++.+...-+......++|+ +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence 3556788899999 6767643 33357999999999976543221123567898 678787777764
Q ss_pred -----eEEEEeCCCceE--EEEec----CCCCEEEEEEccCCCEEEEEeC----CCcEEEEEcCCCceeeeeeeeecccc
Q 002086 618 -----KVRIWSISDRLV--VDWTD----LHEMVTAACYTPDGQNALIGSH----KGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 618 -----~I~IWDl~~~~~--~~~~~----~~~~V~sv~fspdg~~Lasgs~----dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
.|++|++.+... ..+.. +...+..+.|+|||++|+.... ...|+++|+.++..... .+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l------ 276 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TV------ 276 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EE------
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EE------
Confidence 399999977531 22222 2345788999999998876443 34899999977632111 00
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCC---CcEEEEeCCcce----EEEEeecCCCCeEEEEEeCCCCEEEEEeCCC---c
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSAD---SRIRILDGLDIV----HKFRGFRNTSSQISAAFNADGKYIISASEDS---Q 752 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~D---g~I~IwD~~~~~----~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg---~ 752 (969)
..+....... +++++..+++.+..+ +.|..+|..... ..+..+ ...+. .|++++++|+....++ .
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCeeE
Confidence 1223334443 666665666666554 578999976432 233333 33344 8999998887766544 6
Q ss_pred EEEEEcCC
Q 002086 753 VYVWKREE 760 (969)
Q Consensus 753 I~IWdl~t 760 (969)
|++|++..
T Consensus 352 l~~~d~~g 359 (693)
T 3iuj_A 352 VEQFDYEG 359 (693)
T ss_dssp EEEECTTS
T ss_pred EEEEECCC
Confidence 88998875
No 229
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.45 E-value=3.9e-05 Score=81.60 Aligned_cols=199 Identities=10% Similarity=0.068 Sum_probs=132.7
Q ss_pred ceeeeEecccccC--EEEEEEeCCCCEEEEEeCCC--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 441 LHLCQEIQAHEGS--IWTIKFSLDARFLASAGEDR--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 441 ~~l~~~L~gH~~~--I~~l~fSpDg~~LaTgs~Dg--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
.+.++++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+.......
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------------------- 85 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------------------- 85 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-----------------------
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-----------------------
Confidence 4556666 45544 4889999 778888888776 99999999999887532110
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY 596 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~ 596 (969)
..---.+.+..+.+.+..-.++.+.++|..+.+.+..+.....
T Consensus 86 -------------------------------------~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e 128 (262)
T 3nol_A 86 -------------------------------------RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE 128 (262)
T ss_dssp -------------------------------------TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred -------------------------------------ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC
Confidence 0001123333344444555689999999999999999976554
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
-+.+++ ++..|+....++.|.++|..+.+++...... ..++.+.|. +|+.++..-.++.|.+.|..+++.
T Consensus 129 G~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 129 GWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp CCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred ceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE
Confidence 455554 5566666556788999999998776554331 335567776 676555555788999999999998
Q ss_pred eeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEE
Q 002086 671 HQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 671 ~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sg 705 (969)
.....+.-... ......-.++|+|+|++..++++|
T Consensus 205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 76654421111 112235678999999885555554
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.44 E-value=2.5e-08 Score=112.85 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=101.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CCEE-E
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EMVT-A 641 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~V~-s 641 (969)
+..+++++.|+.|+.||..+|+.+..+.. +.+.+..+.. ++..+++++.||.|+.||..+++.+...... ..+. .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 68999999999999999999999988765 6666655655 6667888889999999999888765433222 1110 0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE
Q 002086 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721 (969)
Q Consensus 642 v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~ 721 (969)
..+. .+..+++++.++.|+.||..+++....... +. ...++|++ ..+++++.|+.|+.||..+...
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~--------~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS--------AF----ADSLSPST-SLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC--------CC----cccccccC-CEEEEEecCCEEEEEECCCCCE
Confidence 0111 345778888999999999999886543211 11 13455655 6888899999999999654332
Q ss_pred --EEEeecCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCCCCc
Q 002086 722 --KFRGFRNTSSQISAAFNADG---KYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 722 --~~~~~~~~~~V~sl~fspdg---~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
.+..... ....+..+. ..+++++.||.|+.||..+++.
T Consensus 153 ~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 153 RWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 2221111 122333332 5677788999999999998543
No 231
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.44 E-value=2.2e-05 Score=83.50 Aligned_cols=197 Identities=9% Similarity=0.056 Sum_probs=135.1
Q ss_pred eeeeEecccccC--EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 442 HLCQEIQAHEGS--IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 442 ~l~~~L~gH~~~--I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
+.++++ .|... ...|.|+ ++.++++.+.+|.|+++|+.+++.+... ..
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--------------------------- 93 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--------------------------- 93 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC---------------------------
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC---------------------------
Confidence 455666 35443 5789998 4678888889999999999998876632 00
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEE
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~s 599 (969)
...---.+++..+.+.+..-.++.+.+||..+.+.+..+.....-+.
T Consensus 94 ---------------------------------~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwG 140 (268)
T 3nok_A 94 ---------------------------------GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWG 140 (268)
T ss_dssp ---------------------------------TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCC
T ss_pred ---------------------------------CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeE
Confidence 00001124444455555666789999999999999999976655566
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
+++ ++..|+.+..++.|.++|..+.+++...... ..++.+.|. +|+.++..-.++.|.+.|..+++....
T Consensus 141 Lt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 141 LCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp EEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred Eec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 665 5677777777899999999998776544332 245677777 675554444688999999999998766
Q ss_pred eeeeeccc-----ccCCCCCeEEEEEcCCCCceEEEE
Q 002086 674 NQVDFQTK-----KKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 674 ~~~~~~~~-----~~~h~~~It~l~fspd~~~~l~sg 705 (969)
..+.-... ......-.++|+|+|++..++++|
T Consensus 217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 55431110 122345678999999886666665
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.42 E-value=0.00016 Score=77.08 Aligned_cols=195 Identities=8% Similarity=0.037 Sum_probs=125.3
Q ss_pred CCEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCC-EEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDD-YFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
..+.+++|++ ++.|+ +-...+.|..+++........+. .......+++++ ++. ++++-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 3567899987 55444 55567899999998766544443 235789999998 544 4555556789999998765433
Q ss_pred EEecC-CCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 631 DWTDL-HEMVTAACYTPDGQNALIGSH---KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 631 ~~~~~-~~~V~sv~fspdg~~Lasgs~---dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
.+... ......++++|++..|+++.. .+.|..+++......... .........+++++++..++++-.
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~--------~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--------QDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--------CTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE--------ECCCCCCcEEEEcCCCCEEEEEEC
Confidence 33322 256789999997666665553 468888888654321110 122346789999998755666667
Q ss_pred CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCC
Q 002086 707 ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREEH 761 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t~ 761 (969)
..+.|.++|.......... ........+++. +.+|+.+. ..+.|.++|..++
T Consensus 187 ~~~~I~~~~~~g~~~~~~~-~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp TTTEEEEEETTEEEEEEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred CCCEEEEEecCCCceEEEe-cCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 7789999997643221111 122234566654 44555444 5688999998873
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.38 E-value=5.4e-05 Score=84.83 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=119.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEE-EEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE---
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC-IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT--- 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~s-v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~--- 640 (969)
+..++.++.++.|..+|..+++.+..+.....+.+ ... .+..+++++.++.|..+|..+++.+........+.
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 57888899999999999999998877644433322 222 25688888999999999999998776555433321
Q ss_pred ---EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc-------cCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 641 ---AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK-------KSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 641 ---sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~-------~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
..... +..+++++.++.+..+|..+++............. .....++ +. + ..+++++.++.
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~~--~-~~v~~~~~~g~ 250 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----VV--N-GVVFALAYNGN 250 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----EE--T-TEEEEECTTSC
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----EE--C-CEEEEEecCcE
Confidence 12222 45788888899999999999887544332110000 0001111 11 2 47888888999
Q ss_pred EEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 711 IRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 711 I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|+.+|..+......... .....+.. ++..|+.++.++.|+.+|..++
T Consensus 251 l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 251 LTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred EEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 99999776554444321 22333333 4678888889999999999884
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.37 E-value=9.6e-06 Score=90.29 Aligned_cols=202 Identities=8% Similarity=0.027 Sum_probs=130.9
Q ss_pred ccccCEEEEEEeCCCCEEEEEeC-----CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLASAGE-----DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~-----DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|-..+.+|+|+++|+++++-.. ++.|.+||+.+++++..+.....
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~----------------------------- 114 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP----------------------------- 114 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-----------------------------
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-----------------------------
Confidence 56778999999999987666543 57899999999887654321100
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEe---CCCcEEEEECCCCcEEEEee-c----
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSS---MDKTVRLWDMETKSCLKLFA-H---- 593 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs---~DgtV~IWDl~t~~~i~~~~-h---- 593 (969)
...+...+..+++.+ +. .+++.. .++.|.+||+.+++....+. |
T Consensus 115 --------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 115 --------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp --------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred --------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 001223456788875 34 445554 67899999999888766542 1
Q ss_pred -------------------------CCCeEEEEEecCCCCEEEEEECCC-eEEEEeCC---Cce--------EEEEecCC
Q 002086 594 -------------------------NDYVTCIQFNPMDDDYFISGSLDA-KVRIWSIS---DRL--------VVDWTDLH 636 (969)
Q Consensus 594 -------------------------~~~V~sv~fsp~~~~~L~sgs~Dg-~I~IWDl~---~~~--------~~~~~~~~ 636 (969)
...+..|+|+| ++..|+.+..++ .|..++.. .+. .+...+..
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 247 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK 247 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEEC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccC
Confidence 02368899999 888888877766 55555431 110 01122223
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
.....++++++|.++++...++.|.+||..+++...... ........+++|.+++ .++++.+..+.+.+|
T Consensus 248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-------~~~~~~p~~va~~~~g-~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-------DEKLSWTDSFNFGSDG-YLYFDCNQLHHSAPL 317 (343)
T ss_dssp CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------CGGGSCEEEEEECTTS-CEEEEECCGGGSGGG
T ss_pred CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------CCceecCCeeEECCCC-cEEEEeCcccccccc
Confidence 345678999999999998899999999985555322211 1124568899999876 566666555444333
No 235
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.36 E-value=5.1e-05 Score=83.41 Aligned_cols=258 Identities=9% Similarity=0.001 Sum_probs=150.3
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
....+++|.++|++|+++..++.|..|+..+++......... . . ......+..
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~--~-----~---~~~~~~g~~----------------- 71 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP--Y-----W---NKAFCENST----------------- 71 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCT--T-----C---CHHHHTTCC-----------------
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccc--c-----c---ccccccccc-----------------
Confidence 345678899999978888889999999887654432110000 0 0 000000000
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-----cCCCeEEEEEecC
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-----HNDYVTCIQFNPM 605 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-----h~~~V~sv~fsp~ 605 (969)
..........+.++++.+ +..|+.+...+.|..+|..++....... .......+++.+.
T Consensus 72 ---------------~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~ 136 (322)
T 2fp8_A 72 ---------------DAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 136 (322)
T ss_dssp ---------------CGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT
T ss_pred ---------------chhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC
Confidence 000001123467889986 6677777666668899987654322221 1235788999863
Q ss_pred CCCEEEEEEC-----------------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCC
Q 002086 606 DDDYFISGSL-----------------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG-SHKGSCRLYSIED 667 (969)
Q Consensus 606 ~~~~L~sgs~-----------------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~~ 667 (969)
+++++++-.. ++.|..||..++++............++++++|+.|+++ +..+.|.+|++..
T Consensus 137 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 137 TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 4555555322 367999998877655443333445679999999876665 5568999999886
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC----------CCcEEEEeCCcc-eEEEEeecC--CCCeEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA----------DSRIRILDGLDI-VHKFRGFRN--TSSQIS 734 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~----------Dg~I~IwD~~~~-~~~~~~~~~--~~~V~s 734 (969)
........+ . . ... ...+++.+++ .++++... .+.|..+|.... ...+..... ...+..
T Consensus 217 ~~~~~~~~~--~---~-~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~ 288 (322)
T 2fp8_A 217 PKKGTAEVL--V---K-IPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQ 288 (322)
T ss_dssp TTTTCEEEE--E---E-CSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCE
T ss_pred CcCCccceE--E---e-CCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceE
Confidence 422111111 0 0 112 7889999988 45555443 467888885432 223332211 234556
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+++ .++.++++....+.|.++++..
T Consensus 289 ~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 289 IQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEE-eCCEEEEeecCCCceEEEeccc
Confidence 666 4666666666788899999875
No 236
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=0.00013 Score=76.78 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=133.1
Q ss_pred ceeeeEecccccC--EEEEEEeCCCCEEEEEeCCC--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 441 LHLCQEIQAHEGS--IWTIKFSLDARFLASAGEDR--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 441 ~~l~~~L~gH~~~--I~~l~fSpDg~~LaTgs~Dg--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
.+.++++ .|... ...|.|+. +.++.+.+.+| .|+++|+.+++.+.......
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~----------------------- 63 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP----------------------- 63 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----------------------
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----------------------
Confidence 4556666 46544 66999986 67777777754 89999999999887532110
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY 596 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~ 596 (969)
+ .---.+++..+.+.+..-.++.+.++|..+.+.+..+.....
T Consensus 64 ------------------------------------~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~ 106 (243)
T 3mbr_X 64 ------------------------------------P-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE 106 (243)
T ss_dssp ------------------------------------T-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC
T ss_pred ------------------------------------C-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC
Confidence 0 000123333345555556789999999999999999976655
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
-+.++. ++..|+.+..++.|.++|..+.+++...... ..++.+.+. +|+.++..-.+..|.+.|..+++.
T Consensus 107 Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 107 GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp CCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred ceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence 566664 4555555566889999999998776544332 345667766 666554454688999999999998
Q ss_pred eeeeeeeecccc-----cCCCCCeEEEEEcCCCCceEEEE
Q 002086 671 HQLNQVDFQTKK-----KSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 671 ~~~~~~~~~~~~-----~~h~~~It~l~fspd~~~~l~sg 705 (969)
.....+.-.... .....-.++|+++|++..++++|
T Consensus 183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 766544311111 12234678999999885555555
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.33 E-value=2e-05 Score=86.08 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=114.1
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCC
Q 002086 561 SWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEM 638 (969)
Q Consensus 561 ~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~ 638 (969)
...++..|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.++ .++ +.|..|| .+++.. ........
T Consensus 143 ~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~ 216 (330)
T 3hxj_A 143 IVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWT 216 (330)
T ss_dssp EECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEECCSSCC
T ss_pred EEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcc
Confidence 34444567778888999999999 77766653 345567777765 55544 444 7899999 565544 33333456
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 639 VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
+.++.+.++|. |.+++.++.+..+|.. ++...... .....+..+.+.+++ .|.+++.++.|..+|. +
T Consensus 217 ~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~--------~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~ 283 (330)
T 3hxj_A 217 VTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFK--------TGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-D 283 (330)
T ss_dssp CSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEE--------CSSCCCSCCEECTTS--CEEEECTTCEEEEECT-T
T ss_pred eeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEee--------CCCCccccceEcCCC--eEEEecCCCCEEEECC-C
Confidence 77888888774 5667778888888753 33322111 111222334455444 7888899999999995 3
Q ss_pred ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 719 IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 719 ~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.............+.++...++|. |..++.+|.+++...+.
T Consensus 284 g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 284 GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 332232222334455677777776 55688899999988765
No 238
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.26 E-value=0.001 Score=72.50 Aligned_cols=239 Identities=10% Similarity=0.045 Sum_probs=144.0
Q ss_pred cccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
....+.+.+|..+ ....+++|+++|+++++-..++.|..||.... .....
T Consensus 19 ~~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~---------------------------- 68 (306)
T 2p4o_A 19 LAPAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA---------------------------- 68 (306)
T ss_dssp CCCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE----------------------------
T ss_pred CCCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE----------------------------
Confidence 3445556666543 56789999999998888777888988887642 21100
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC--CcEEEEECCCCcEEEEee--
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD--KTVRLWDMETKSCLKLFA-- 592 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D--gtV~IWDl~t~~~i~~~~-- 592 (969)
.-......+++.+ ++++++.... ..|..+|..+++......
T Consensus 69 ----------------------------------~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~ 114 (306)
T 2p4o_A 69 ----------------------------------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 114 (306)
T ss_dssp ----------------------------------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred ----------------------------------eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC
Confidence 0112467888988 5554444332 247777888887655442
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce--EEEEe---------cCCCCEEEEEEccCCCEEEEE-eCCCcE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL--VVDWT---------DLHEMVTAACYTPDGQNALIG-SHKGSC 660 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~---------~~~~~V~sv~fspdg~~Lasg-s~dg~I 660 (969)
.......++..+ .+..+++-..++.|+++|...+. +.... ........+ +++++.|+++ ...+.|
T Consensus 115 ~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I 191 (306)
T 2p4o_A 115 DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLL 191 (306)
T ss_dssp TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEE
T ss_pred CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEE
Confidence 223345566554 44444444468999999987653 22111 011234555 7888766655 457899
Q ss_pred EEEEcCC-CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee-cCCCCeEEEEEe
Q 002086 661 RLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF-RNTSSQISAAFN 738 (969)
Q Consensus 661 ~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-~~~~~V~sl~fs 738 (969)
..|++.. +.......+ . .......+++.+++ .++++....+.|.+++........... ......++++|.
T Consensus 192 ~~~~~~~~g~~~~~~~~--~-----~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 192 LRIPVDSTDKPGEPEIF--V-----EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp EEEEBCTTSCBCCCEEE--E-----ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred EEEEeCCCCCCCccEEE--e-----ccCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEe
Confidence 9999875 332111110 0 01345668899988 566666677899999965332222222 223557899998
Q ss_pred ---CCCCEEEEEeCCC
Q 002086 739 ---ADGKYIISASEDS 751 (969)
Q Consensus 739 ---pdg~~LaSgs~Dg 751 (969)
||++.|+.++..+
T Consensus 264 g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CSTTTTTEEEEEECTT
T ss_pred cccCCCCEEEEECCCC
Confidence 8888777766544
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.26 E-value=1.6e-05 Score=93.75 Aligned_cols=186 Identities=9% Similarity=0.048 Sum_probs=121.7
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC-----------------------------------
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA----------------------------------- 617 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg----------------------------------- 617 (969)
.++.|.+.|..+.+.+..+.-.+....++++| ++.++++.+.+.
T Consensus 173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred cCceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 34678999999998888875544667788999 888888887553
Q ss_pred ---eEEEEeCCC--ceE-EEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeee---cccccCCCC
Q 002086 618 ---KVRIWSISD--RLV-VDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDF---QTKKKSSTR 687 (969)
Q Consensus 618 ---~I~IWDl~~--~~~-~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~---~~~~~~h~~ 687 (969)
.|.|.|..+ +.. +..........++.++|||+++++++ .+.+|.++|+.+.+......+.. ......-..
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred EECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 366777766 333 34444445667899999999888765 68899999998653100000000 000122345
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------------ceEEEEeecCCCCe---EEEEEeCCCCEEEEEeC---
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLD------------IVHKFRGFRNTSSQ---ISAAFNADGKYIISASE--- 749 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------------~~~~~~~~~~~~~V---~sl~fspdg~~LaSgs~--- 749 (969)
....++|+|+| ..+++.-.|++|.+||... .+.++..+...+.. ..+.++|||++|+++..
T Consensus 332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 68899999999 7777888999999999543 22233322111101 12345899999999865
Q ss_pred CCcE----------EEEEcCC
Q 002086 750 DSQV----------YVWKREE 760 (969)
Q Consensus 750 Dg~I----------~IWdl~t 760 (969)
|+.+ .++|+..
T Consensus 411 dr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSS
T ss_pred cccccCCCCCCCcceEEEcCC
Confidence 4331 8899965
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.24 E-value=0.00016 Score=77.43 Aligned_cols=197 Identities=10% Similarity=0.033 Sum_probs=131.4
Q ss_pred CEEEEEecC-CcEEEEEeC--CCcEEEEECCCCcEEEEeecC--CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 556 DVLDLSWSR-SHLLLSSSM--DKTVRLWDMETKSCLKLFAHN--DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~--DgtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
....+.|++ +.++++.+. ++.|.+.|+.+++.+..+... .....+++. .+.++++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 367999998 544444443 689999999999999887432 233456665 2445555556789999999999887
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
..+... .-....++++|+.++++..++.|.++|..+.+......+... ......+..+.|. ++ ..++....++.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~~nele~~-dg-~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---GHRVIRLNELEYI-NG-EVWANIWQTDC 173 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE-TT-EEEEEETTSSE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---CcccccceeEEEE-CC-EEEEecCCCCe
Confidence 766443 111244666888888777889999999999877654433210 1122346778887 45 45555556789
Q ss_pred EEEEeCCcce--EEEEeec-----------CCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEcCC
Q 002086 711 IRILDGLDIV--HKFRGFR-----------NTSSQISAAFNADGKY-IISASEDSQVYVWKREE 760 (969)
Q Consensus 711 I~IwD~~~~~--~~~~~~~-----------~~~~V~sl~fspdg~~-LaSgs~Dg~I~IWdl~t 760 (969)
|.+.|..+.. ..+.... .......++|+|+++. ++++...+.|++-++..
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 9999976543 3333211 1124579999999865 55666788899998876
No 241
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.21 E-value=3.6e-05 Score=94.06 Aligned_cols=192 Identities=10% Similarity=-0.027 Sum_probs=118.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecC------CCeEEEEEecCCCCEEEEEEC------CCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHN------DYVTCIQFNPMDDDYFISGSL------DAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~------~~V~sv~fsp~~~~~L~sgs~------Dg~I~IWDl~~~~~~~~ 632 (969)
+..|+.++.|+.|..+|..+|+.+..+... ..+.+.-.. .+..+++++. +|.|+.||..+++++-.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 478888899999999999999998877432 122221111 2455555543 79999999999987754
Q ss_pred ecCCC---------------------------------CEEEEEEccCCCEEEEEeCCC-------------------cE
Q 002086 633 TDLHE---------------------------------MVTAACYTPDGQNALIGSHKG-------------------SC 660 (969)
Q Consensus 633 ~~~~~---------------------------------~V~sv~fspdg~~Lasgs~dg-------------------~I 660 (969)
..... ....++++|++..|++++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 33211 113578899999999887764 59
Q ss_pred EEEEcCCCceeeeeeeeeccc-ccCCCCCeEEEEEcCCCC--ceEEEEeCCCcEEEEeCCcceEEEEeecCC--------
Q 002086 661 RLYSIEDSKLHQLNQVDFQTK-KKSSTRKITGFQFSPSNP--SEVLVTSADSRIRILDGLDIVHKFRGFRNT-------- 729 (969)
Q Consensus 661 ~IwDl~~~~~~~~~~~~~~~~-~~~h~~~It~l~fspd~~--~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~-------- 729 (969)
..+|..+++..-..+...... ..........+....++. ..++.++.+|.|+++|..+...........
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 999999998765443211000 000012222233333442 478888999999999976544433221110
Q ss_pred ---CCe------------------------EEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 730 ---SSQ------------------------ISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 730 ---~~V------------------------~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..+ ..++|+|++.+|++...+-...+|..
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 000 14688999989888776644444443
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.20 E-value=0.00065 Score=84.41 Aligned_cols=199 Identities=8% Similarity=0.192 Sum_probs=134.6
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee--------cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA--------HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--------h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
..|.++...++..|..|+.++-|.+||..+++...... ....|.++...+ ++.+.+ |+.+ -|.+||..+
T Consensus 215 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 215 KQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLWI-GTFN-DLNIYHEGT 291 (795)
T ss_dssp CCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEEE-EESS-CEEEEETTT
T ss_pred CeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEEE-EeCC-hhheEcCCC
Confidence 45777777665667777766569999998876554331 135699999987 565544 4455 589999988
Q ss_pred ceEEEEec--------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 627 RLVVDWTD--------LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 627 ~~~~~~~~--------~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
+....... ....|.++...++|. |.+|+.++-|.+|+............. .........|.++...+++
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~--~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIP--YKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCT--TSSSCSCSSEEEEEECTTS
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCC--CCCCCCCCeeEEEEECCCC
Confidence 87665532 125699999999886 556778888999987665433221110 0111234569999988876
Q ss_pred CceEEEEeCCCcEEEEeCCcce-EEEEee-------cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 699 PSEVLVTSADSRIRILDGLDIV-HKFRGF-------RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~-------~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.|.+|+.++.|..|+..... ..+... .....|.++...++|.+|..|+.++-|.+||..++
T Consensus 369 --~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 369 --NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp --CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred --CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 67778888889999965432 222211 12356889999999986777887788999998764
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.19 E-value=1.2e-05 Score=87.70 Aligned_cols=174 Identities=17% Similarity=0.087 Sum_probs=113.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAA 642 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv 642 (969)
+..|..++.++.|..+|.. ++....+. ....+.++...+ ++ .|+.++.++.|..||.. ++.+... .....+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 5778888999999999998 77665553 444566667765 44 46667888999999999 6554333 334456677
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
.+.+++..+ +++ +.|..|| .+++..... ......+.++.+.+++ .|.+++.++.|..+|..... .
T Consensus 183 ~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~--------~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~-~ 247 (330)
T 3hxj_A 183 SIGKDGTIY-FGS--DKVYAIN-PDGTEKWNF--------YAGYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTE-K 247 (330)
T ss_dssp EECTTCCEE-EES--SSEEEEC-TTSCEEEEE--------CCSSCCCSCCEECTTS--CEEEEETTTEEEEECTTSCE-E
T ss_pred EEcCCCEEE-EEe--CEEEEEC-CCCcEEEEE--------ccCCcceeceEECCCC--eEEEEcCCCeEEEECCCCCE-e
Confidence 777777644 444 8899999 555543221 1223457777787765 67778888889999843222 2
Q ss_pred EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 723 FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.........+..+.+.+++ .|..++.+|.|+.+|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 248 WRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 2222222223345555555 5667788888999985
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.16 E-value=4.2e-05 Score=90.20 Aligned_cols=186 Identities=13% Similarity=0.140 Sum_probs=128.9
Q ss_pred CcEEEEE-eCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEe--cCCCCEEEEEE------------------CCCeEEE
Q 002086 565 SHLLLSS-SMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFN--PMDDDYFISGS------------------LDAKVRI 621 (969)
Q Consensus 565 ~~~L~Sg-s~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fs--p~~~~~L~sgs------------------~Dg~I~I 621 (969)
+++|... ..+..|.+.|+.+.++.+++ .....+..+++. | ++.++++++ .++.+.+
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 3454444 45677999999999998855 455678899984 7 888888885 2467999
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC--------------------------------------cEEEE
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG--------------------------------------SCRLY 663 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg--------------------------------------~I~Iw 663 (969)
+|..+.++............++++|+|+++++.+.+. .|.+.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 9999998877665544567788999999999988553 24444
Q ss_pred EcCC--Cce-eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-----------EEEEeecCC
Q 002086 664 SIED--SKL-HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV-----------HKFRGFRNT 729 (969)
Q Consensus 664 Dl~~--~~~-~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~-----------~~~~~~~~~ 729 (969)
|..+ ++. .... .-.....++.++|||...++++..+.+|.++|..+.. .......-.
T Consensus 260 D~~~~~~~~~~~~I---------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 260 DGRKEASSLFTRYI---------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp ECSGGGCCSSEEEE---------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred eCcccCCceeEEEE---------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 4443 111 1110 0123456789999996566666788999999977542 122222333
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.....++|+++|...++.-.|+.|.+||+++
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 4567899999994445566799999999976
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.16 E-value=0.0022 Score=79.69 Aligned_cols=244 Identities=10% Similarity=0.093 Sum_probs=160.8
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|.+|...++|.+.+. ..+ -|.+||..+++..........
T Consensus 262 ~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~------------------------------------ 303 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVE------------------------------------ 303 (795)
T ss_dssp CSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTS------------------------------------
T ss_pred CCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCC------------------------------------
Confidence 457999999998885543 344 488999877665432110000
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-------cCCCeEEEEEe
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA-------HNDYVTCIQFN 603 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-------h~~~V~sv~fs 603 (969)
...-....|.++...+...|..|+.++-|.+|+..++....... ....|.++...
T Consensus 304 ------------------~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 304 ------------------NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp ------------------TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred ------------------CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 00012356889988887778889988889999987665433221 23569999988
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEEec---------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWTD---------LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---------~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
+ ++. |-.|+.++-|..||..++....+.. ....|.+++..++|..|.+|+.++.|.+||..+++.....
T Consensus 366 ~-~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 366 K-DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN 443 (795)
T ss_dssp T-TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred C-CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence 6 555 5557777779999998877655431 1356999999988886778888888999999887654321
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee------cCCCCeEEEEEeCCCCEEEEEe
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF------RNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~------~~~~~V~sl~fspdg~~LaSgs 748 (969)
.. ........|.++...+++ .|.+|+. +.|.+||........... .....|.++...++|.+.+...
T Consensus 444 ~~----~~~l~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 444 QR----NSQLVNENVYAILPDGEG--NLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp TT----TSCCSCSCEEEEEECSSS--CEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred cC----CCCcCCCeeEEEEECCCC--CEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence 10 001234578999988876 4555665 568889865433221111 1235688899999988666554
Q ss_pred CCCcEEEEEcCCC
Q 002086 749 EDSQVYVWKREEH 761 (969)
Q Consensus 749 ~Dg~I~IWdl~t~ 761 (969)
+.|++|+..+.
T Consensus 517 --~Gl~~~~~~~~ 527 (795)
T 4a2l_A 517 --EGLSVFKQEGL 527 (795)
T ss_dssp --SCEEEEEEETT
T ss_pred --CceEEEeCCCC
Confidence 56888887653
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.15 E-value=6.9e-05 Score=91.42 Aligned_cols=187 Identities=12% Similarity=0.160 Sum_probs=118.8
Q ss_pred CCcEEEEECCCCcEEEEeecC--C------------------------------CeEEEEEecCCCCEEEEEECCC----
Q 002086 574 DKTVRLWDMETKSCLKLFAHN--D------------------------------YVTCIQFNPMDDDYFISGSLDA---- 617 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~--~------------------------------~V~sv~fsp~~~~~L~sgs~Dg---- 617 (969)
+|.|..+|..+|+.+-.+... . ....+++.| ..++++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 589999999999988776321 0 112468888 678888887776
Q ss_pred ---------------eEEEEeCCCceEEEEecCC----------CCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCCc
Q 002086 618 ---------------KVRIWSISDRLVVDWTDLH----------EMVTAACYTPDGQ---NALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 618 ---------------~I~IWDl~~~~~~~~~~~~----------~~V~sv~fspdg~---~Lasgs~dg~I~IwDl~~~~ 669 (969)
.|..+|..+++++-.+... .++....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 3999999999877544321 2333334444665 68889999999999999998
Q ss_pred eeeeeeeeec---cccc-CCCC------------------------CeEEEEEcCCCCceEEEE----------------
Q 002086 670 LHQLNQVDFQ---TKKK-SSTR------------------------KITGFQFSPSNPSEVLVT---------------- 705 (969)
Q Consensus 670 ~~~~~~~~~~---~~~~-~h~~------------------------~It~l~fspd~~~~l~sg---------------- 705 (969)
++....+... .... .... .-..++++|+.. .+++.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccc
Confidence 7633221100 0000 0000 011256777653 33321
Q ss_pred --------------------eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 706 --------------------SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 706 --------------------s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
..++.|+.||..+.....+.... .......+...+.+|+.++.||.|++||.++++.
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 12478999998776665544322 2233334555788999999999999999998544
No 247
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.15 E-value=0.00015 Score=88.72 Aligned_cols=180 Identities=11% Similarity=0.114 Sum_probs=115.0
Q ss_pred EEEecC-CcEEEEEeCCCc-------------------EEEEECCCCcEEEEee---cC-------CCeEEEEEecCCCC
Q 002086 559 DLSWSR-SHLLLSSSMDKT-------------------VRLWDMETKSCLKLFA---HN-------DYVTCIQFNPMDDD 608 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~Dgt-------------------V~IWDl~t~~~i~~~~---h~-------~~V~sv~fsp~~~~ 608 (969)
.+++.+ .++|+.+..++. |..||..+|+.+-.+. |. ..+....... ++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 466776 678888877763 9999999999987773 21 1222222222 443
Q ss_pred ---EEEEEECCCeEEEEeCCCceEEEEecCCC--C--------------------------------------EEEEEEc
Q 002086 609 ---YFISGSLDAKVRIWSISDRLVVDWTDLHE--M--------------------------------------VTAACYT 645 (969)
Q Consensus 609 ---~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~--~--------------------------------------V~sv~fs 645 (969)
.++.++.+|.|+++|..+++++....... . -..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999998863221110 0 1126889
Q ss_pred cCCCEEEEEeC---------------------------------------------CCcEEEEEcCCCceeeeeeeeecc
Q 002086 646 PDGQNALIGSH---------------------------------------------KGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 646 pdg~~Lasgs~---------------------------------------------dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
|+..++++... +|.|..||+.+++........
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 98888877632 377999999999876443221
Q ss_pred cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCC-CCeEEEEEeCCCC-EEEEEeC
Q 002086 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNT-SSQISAAFNADGK-YIISASE 749 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~-~~V~sl~fspdg~-~LaSgs~ 749 (969)
.++..-.+...+ .++++++.|+.|+.||..+.....+..... ....-+.|..+|+ |+++.+.
T Consensus 475 ------~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 ------TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ------SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ------CCccCccceECC-CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 111222333344 588899999999999987766555443222 1123466778886 4454433
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.12 E-value=0.00025 Score=75.42 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=122.5
Q ss_pred EEEEEecCCcEEEEEeCCC--cEEEEECCCCcEEEEeecCCCeEE--EEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 557 VLDLSWSRSHLLLSSSMDK--TVRLWDMETKSCLKLFAHNDYVTC--IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V~s--v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
...|.|+.+.++.+.+.+| .|+++|+.+++.+....-...... +++. .+.+++..-.++.+.+||..+.+++..
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788888666667777766 999999999999988855554443 4553 334444455688999999999988876
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
+.....- ..++++++.|+....++.|.++|..+.+......+... ......+..+.|. ++ ..++..-.+..|.
T Consensus 123 i~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~---g~~~~~lNELe~~-~G-~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH---GEELPELNELEWV-DG-EIFANVWQTNKIV 195 (262)
T ss_dssp EECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET---TEECCCEEEEEEE-TT-EEEEEETTSSEEE
T ss_pred EECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC---CccccccceeEEE-CC-EEEEEEccCCeEE
Confidence 6654322 33446778787777788999999999887655443210 1112345567776 44 5555555688899
Q ss_pred EEeCCcc--eEEEEee----------cCCCCeEEEEEeCCCCEEEEEeC
Q 002086 713 ILDGLDI--VHKFRGF----------RNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 713 IwD~~~~--~~~~~~~----------~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
+.|..+. ...+... ......+.++|+|+++.|+..+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9996653 3333321 11124578999998877776664
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.12 E-value=0.0022 Score=68.07 Aligned_cols=176 Identities=5% Similarity=-0.085 Sum_probs=107.2
Q ss_pred CCEEEEEecC-CcE-EEEEeCCCcEEEEECCCCcEEEEeec-CCCeEEEEEecCCCCEEEEEEC---CCeEEEEeCCCce
Q 002086 555 DDVLDLSWSR-SHL-LLSSSMDKTVRLWDMETKSCLKLFAH-NDYVTCIQFNPMDDDYFISGSL---DAKVRIWSISDRL 628 (969)
Q Consensus 555 ~~I~~l~fs~-~~~-L~Sgs~DgtV~IWDl~t~~~i~~~~h-~~~V~sv~fsp~~~~~L~sgs~---Dg~I~IWDl~~~~ 628 (969)
.....+++.+ +.. +++-...+.|.++++........... ......++++| ++..|+.+.. .+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 3467888887 444 44555678999999876543333322 25678999998 6666555544 3689888886543
Q ss_pred EEEEe-cCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 629 VVDWT-DLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 629 ~~~~~-~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
...+. ........+++++++..|.++. ..+.|.++|+......... . .......+++. +..++++..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--------~-~~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--------E-GLQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE--------E-CCCSEEEEEEE--TTEEEEEET
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe--------c-CCCCceEEEEe--CCEEEEEEC
Confidence 33222 2235688999999877666554 5679999999754322111 1 12234566654 334555555
Q ss_pred CCCcEEEEeCCcceEEEEeecCC-CCeEEEEEeCCCC
Q 002086 707 ADSRIRILDGLDIVHKFRGFRNT-SSQISAAFNADGK 742 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~~~~~~~~~~-~~V~sl~fspdg~ 742 (969)
..+.|.++|.............. .....+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 67899999976543332222221 1345677777753
No 250
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.12 E-value=0.00011 Score=83.97 Aligned_cols=188 Identities=9% Similarity=0.057 Sum_probs=125.2
Q ss_pred CcEEEEEeCCCcEEEEECCCC----cEEEEee-------cC-CCeEEEEEecCCCCEEEEEECC------CeEEEEeCCC
Q 002086 565 SHLLLSSSMDKTVRLWDMETK----SCLKLFA-------HN-DYVTCIQFNPMDDDYFISGSLD------AKVRIWSISD 626 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~----~~i~~~~-------h~-~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~ 626 (969)
..+++++..++.|.++|+.+. +..+++. .. .....+.+.| ++ +++++..+ |.|.++|..+
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 356666778899999999765 5666662 11 2455678888 77 77776655 7899999999
Q ss_pred ceEEEEecCC----CCEEEEEEccCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 627 RLVVDWTDLH----EMVTAACYTPDGQNALIGS-------------------HKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 627 ~~~~~~~~~~----~~V~sv~fspdg~~Lasgs-------------------~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
.+++...... ...+.+.|+|+++.+++.. ...+|.+||+.+++......+ .
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v------g 247 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL------G 247 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES------C
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec------C
Confidence 9888766532 2234688899999888874 378999999998765543322 1
Q ss_pred CCCCCeEEEEE--cCCCCceEEEEe-----CCCcEEEEeCCcc----eEEEEeec----C------------CCCeEEEE
Q 002086 684 SSTRKITGFQF--SPSNPSEVLVTS-----ADSRIRILDGLDI----VHKFRGFR----N------------TSSQISAA 736 (969)
Q Consensus 684 ~h~~~It~l~f--spd~~~~l~sgs-----~Dg~I~IwD~~~~----~~~~~~~~----~------------~~~V~sl~ 736 (969)
........+.| +|++...++++- .+++|.+|..... ...+.... . ......+.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 11123445555 999854455555 6778877652211 11110000 0 23466889
Q ss_pred EeCCCCEEEEEeC-CCcEEEEEcCC
Q 002086 737 FNADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 737 fspdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
+++||++|.++.. .+.|.+||+..
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecC
Confidence 9999999988876 67899999975
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.06 E-value=0.00038 Score=74.03 Aligned_cols=183 Identities=10% Similarity=0.004 Sum_probs=125.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE--EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT--CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~--sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~ 633 (969)
-...|.|+.+.++++.+.+|.|+++|+.+++.+..+ -..... .+++. .+.+++..-.++.+.+||..+.+++..+
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 347889987788888899999999999999988776 444443 35554 3556666667899999999999888766
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
.....-..++ ++++.|+++..++.|.++|..+.+......+... ......++.+.|. ++ ..++..-.+..|.+
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~---g~~v~~lNeLe~~-dG-~lyanvw~s~~I~v 205 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR---GQPVELINELECA-NG-VIYANIWHSSDVLE 205 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE-TT-EEEEEETTCSEEEE
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC---CcccccccccEEe-CC-EEEEEECCCCeEEE
Confidence 6544333343 5788888888899999999999887655443221 1122345677777 44 55554556788999
Q ss_pred EeCCcc--eEEEEee-----------cCCCCeEEEEEeCCCCEEEEEe
Q 002086 714 LDGLDI--VHKFRGF-----------RNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 714 wD~~~~--~~~~~~~-----------~~~~~V~sl~fspdg~~LaSgs 748 (969)
.|..+. ...+... ......+.++|+|+++.|+..+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 996653 3333321 1123467899999765555444
No 252
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.04 E-value=2.1e-05 Score=88.65 Aligned_cols=101 Identities=10% Similarity=-0.099 Sum_probs=77.3
Q ss_pred CcEEEEEeCCC----cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEE----------CCCeEEEEeCCCceEE
Q 002086 565 SHLLLSSSMDK----TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGS----------LDAKVRIWSISDRLVV 630 (969)
Q Consensus 565 ~~~L~Sgs~Dg----tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs----------~Dg~I~IWDl~~~~~~ 630 (969)
...+++-..++ +|.+.|..+++.+..+.-...- .+.++| ++.+++++. .++.|.+||+.+++++
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 34455555555 8889999999999988433333 899999 888877775 3688999999999888
Q ss_pred EEecCC--------CCEEEEEEccCCCEEEEEeC--CCcEEE--EEcCC
Q 002086 631 DWTDLH--------EMVTAACYTPDGQNALIGSH--KGSCRL--YSIED 667 (969)
Q Consensus 631 ~~~~~~--------~~V~sv~fspdg~~Lasgs~--dg~I~I--wDl~~ 667 (969)
...... .....++|+|||++++++.. ...+.+ +|+.+
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 765432 33568999999999998875 457888 88866
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.03 E-value=0.0013 Score=69.22 Aligned_cols=186 Identities=13% Similarity=0.012 Sum_probs=123.9
Q ss_pred CCEEEEEecCCcEEEEEeCCC--cEEEEECCCCcEEEEeecCCCeE--EEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSRSHLLLSSSMDK--TVRLWDMETKSCLKLFAHNDYVT--CIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V~--sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
.-...+.|+++.++.+.+.+| .|+.+|+.+++.+....-..... .+++. .+.+++..-.++.+.+||..+.+++
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 346689999877777777754 89999999999998885544443 34443 3455555667899999999999888
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
..+.....-..+ .+++..|+++..++.|.++|..+.+......+... ......++.+.+. ++ ..++..-.+..
T Consensus 99 ~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~---g~~~~~lNeLe~~-~G-~lyanvw~s~~ 171 (243)
T 3mbr_X 99 ARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG---GRPLDNLNELEWV-NG-ELLANVWLTSR 171 (243)
T ss_dssp EEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE-TT-EEEEEETTTTE
T ss_pred EEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC---CcccccceeeEEe-CC-EEEEEECCCCe
Confidence 776655433344 45777777777789999999999887655443211 1112345666665 34 44544446778
Q ss_pred EEEEeCCcce--EEEEee-----------cCCCCeEEEEEeCCCCEEEEEeC
Q 002086 711 IRILDGLDIV--HKFRGF-----------RNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 711 I~IwD~~~~~--~~~~~~-----------~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
|.+.|..+.. ..+... ......+.++++|+++.|+..+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999966533 333321 11234578999998776666553
No 254
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.99 E-value=0.002 Score=68.48 Aligned_cols=207 Identities=12% Similarity=0.205 Sum_probs=135.8
Q ss_pred EeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEeec--CCCeEEEEEecCCCCEEEEEECCCeEEEEeC
Q 002086 549 SFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLFAH--NDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~~h--~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl 624 (969)
.+.+-...+..++|+| + .++++...++.|...|.. ++.+..+.. ....-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 3455667899999998 4 456667889999999998 888877633 35788899987 6666666556788999987
Q ss_pred CCce---EEEEe-------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec--ccccCCCCCeEEE
Q 002086 625 SDRL---VVDWT-------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ--TKKKSSTRKITGF 692 (969)
Q Consensus 625 ~~~~---~~~~~-------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~--~~~~~h~~~It~l 692 (969)
.... .+... ..+.....++|+|.++.|+++.+.....||.+..........+... .........+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 6533 12222 1224468999999998888888776666666652100000111000 0112234568999
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCcce-EEEEeecC-------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLDIV-HKFRGFRN-------TSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~~~-------~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
+++|....+++.......|.++|..... ..+..... ...-..|+|.++|++.++ ++-+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 9999887788888888889999965433 22322211 124568999999985555 77776666643
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.91 E-value=0.00091 Score=73.26 Aligned_cols=195 Identities=11% Similarity=0.029 Sum_probs=125.0
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee--------------------cCCCeEEEEEecCCCCE
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA--------------------HNDYVTCIQFNPMDDDY 609 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--------------------h~~~V~sv~fsp~~~~~ 609 (969)
.+.-....+++|.+ +.+++++..++.|..||..++....... ....+.+|++.+ ++..
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~ 93 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQ 93 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTE
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCc
Confidence 33334456788887 5668888899999999988765443221 113578999986 4556
Q ss_pred EEEEECCCeEEEEeCCCceEEEEecC-----CCCEEEEEEcc-CCCEEEEEeC-----------------CCcEEEEEcC
Q 002086 610 FISGSLDAKVRIWSISDRLVVDWTDL-----HEMVTAACYTP-DGQNALIGSH-----------------KGSCRLYSIE 666 (969)
Q Consensus 610 L~sgs~Dg~I~IWDl~~~~~~~~~~~-----~~~V~sv~fsp-dg~~Lasgs~-----------------dg~I~IwDl~ 666 (969)
|+.+...+.|..+|..++.+..+... ......+++.+ +|.++++-.. ++.|..||..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 66666666689999887654333211 13478899999 9977666432 3678888887
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----ceEEEEeecCCCCeEEEEEeCCCC
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----IVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
+++...... .......++|+|++..++++-...+.|++|+... ....+.. ... ...++++++|.
T Consensus 174 ~~~~~~~~~---------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 174 TKETTLLLK---------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGH 241 (322)
T ss_dssp TTEEEEEEE---------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSC
T ss_pred CCEEEEecc---------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCC
Confidence 665432210 1123457899998833445556678999998653 1222221 223 67899999998
Q ss_pred EEEEEeC----------CCcEEEEEc
Q 002086 743 YIISASE----------DSQVYVWKR 758 (969)
Q Consensus 743 ~LaSgs~----------Dg~I~IWdl 758 (969)
+.++... .+.|..++.
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred EEEEecCcccccccCCCccEEEEECC
Confidence 7777654 355666664
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.86 E-value=0.00091 Score=79.91 Aligned_cols=195 Identities=12% Similarity=0.082 Sum_probs=116.9
Q ss_pred cEEEEEeC------CCcEEEEECCCCcEEEEeecCCCe---------------------------------------EEE
Q 002086 566 HLLLSSSM------DKTVRLWDMETKSCLKLFAHNDYV---------------------------------------TCI 600 (969)
Q Consensus 566 ~~L~Sgs~------DgtV~IWDl~t~~~i~~~~h~~~V---------------------------------------~sv 600 (969)
..++.++. ++.|..+|..+|+.+-.+...... ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45555554 799999999999988776332211 235
Q ss_pred EEecCCCCEEEEEECC----------------CeEEEEeCCCceEEEEecCC----------CCEEEEEEccCCC---EE
Q 002086 601 QFNPMDDDYFISGSLD----------------AKVRIWSISDRLVVDWTDLH----------EMVTAACYTPDGQ---NA 651 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~D----------------g~I~IWDl~~~~~~~~~~~~----------~~V~sv~fspdg~---~L 651 (969)
++.+ ....++.+..+ +.|..+|..+++++-..... ....-+....+|+ .+
T Consensus 241 a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v 319 (571)
T 2ad6_A 241 AYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL 319 (571)
T ss_dssp EEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred EEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence 6776 55666666532 36999999999877544321 1112233335774 57
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeeecc----ccc-CCCCCe--------------------------EEEEEcCCCCc
Q 002086 652 LIGSHKGSCRLYSIEDSKLHQLNQVDFQT----KKK-SSTRKI--------------------------TGFQFSPSNPS 700 (969)
Q Consensus 652 asgs~dg~I~IwDl~~~~~~~~~~~~~~~----~~~-~h~~~I--------------------------t~l~fspd~~~ 700 (969)
++++.+|.++++|..+++.+....+.... ... ....++ ..++|+|+. .
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-g 398 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-R 398 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-T
T ss_pred EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-C
Confidence 78899999999999999876543321100 000 000011 235677766 3
Q ss_pred eEEEEe-------------------------------------CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCE
Q 002086 701 EVLVTS-------------------------------------ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 701 ~l~sgs-------------------------------------~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
++++.. .++.|+.||..+.....+.... ..+....+...+.+
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCE
Confidence 444432 3578999997765544443221 12222233335667
Q ss_pred EEEEeCCCcEEEEEcCCCCc
Q 002086 744 IISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~~~ 763 (969)
++.++.||.|+.||.++++.
T Consensus 478 v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEEECTTSEEEEEETTTCCE
T ss_pred EEEEcCCCeEEEEECCCCCE
Confidence 88899999999999998543
No 257
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.81 E-value=0.0089 Score=67.53 Aligned_cols=201 Identities=7% Similarity=-0.005 Sum_probs=129.8
Q ss_pred cCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 552 GHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
.....+..++|.+ ++ ++++-...+.|..+++........+. .......+++.+..+.++++-...+.|.+.++....
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 3445688999986 44 55555577889999998876555543 234567889987445556666667889999987655
Q ss_pred EEEEec-CCCCEEEEEEccCCCEEEEEe-CC-CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 629 VVDWTD-LHEMVTAACYTPDGQNALIGS-HK-GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 629 ~~~~~~-~~~~V~sv~fspdg~~Lasgs-~d-g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
...+.. .......+++.|.+..|+... .. +.|..+++......... .........|+|+|++..++++-
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------DTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSSCSCEEEEEEEGGGTEEEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE--------ECCCCCeeeEEEeCCCCEEEEEE
Confidence 443333 336689999999777666554 34 68888888764332211 12234578999998775666666
Q ss_pred eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 706 SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 706 s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
...+.|..++...................+++ ..+.++++-...+.|..++..++
T Consensus 265 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 265 AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 77788999986532221112222334567777 34555666666778888885553
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.80 E-value=0.013 Score=65.16 Aligned_cols=199 Identities=7% Similarity=0.005 Sum_probs=127.9
Q ss_pred CCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE
Q 002086 553 HLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 553 H~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
....+..++|.+ ++ ++++-...+.|..+++.......... .......+++.+..+.++++-...+.|.+.++.....
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 345578999986 44 44455567889999998776554442 2345678999874455566666678999999886654
Q ss_pred EEEe-cCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 630 VDWT-DLHEMVTAACYTPDGQNALIGS-HK-GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 630 ~~~~-~~~~~V~sv~fspdg~~Lasgs-~d-g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
..+. ........++++|.+..|+... .. +.|..+++......... .........|+++|++..++++-.
T Consensus 151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------DTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC--------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE--------ECCCCCcceEEEeCCCCEEEEEEC
Confidence 4333 2335689999999666655544 44 78888888764332111 123445789999987756666667
Q ss_pred CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 707 ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+.|..++...................+++. ++.++++-...+.|..++..+
T Consensus 223 ~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccC
Confidence 77889999865322211111223345677773 455555655677788887555
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.79 E-value=0.0033 Score=68.31 Aligned_cols=198 Identities=11% Similarity=0.011 Sum_probs=122.7
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC--CeEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD--AKVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D--g~I~IWDl~~~~~~~ 631 (969)
.....++|.+ +.++++-..++.|..||... .....+.....+..|++.+ +++++++.... ..|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 5677899988 56666666889999999876 4444555556789999999 78866665433 247778888877654
Q ss_pred EecC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee-ecc-cccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 632 WTDL--HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD-FQT-KKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 632 ~~~~--~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-~~~-~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
+... ......++..+++..+++-..++.|+++|...+......... ... ...........+ ++++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 4332 233455666655544444446889999998764321100000 000 001122344555 7777455666677
Q ss_pred CCcEEEEeCCc-c----eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 708 DSRIRILDGLD-I----VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 708 Dg~I~IwD~~~-~----~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+.|+.|+... . ...+... .....++++++|+++++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 88999999542 1 1122111 234468899999887777778889999864
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.78 E-value=0.016 Score=63.43 Aligned_cols=200 Identities=10% Similarity=0.015 Sum_probs=126.4
Q ss_pred CCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCC----CcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 002086 553 HLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMET----KSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625 (969)
Q Consensus 553 H~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t----~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~ 625 (969)
....+.+++|.+ ++ ++++-...+.|..+++.. ......+. .......|++.+..++++++-...+.|.++++.
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence 455678999987 44 455555678999999886 22222332 224568899987345555665677899999998
Q ss_pred CceEEEEec-CCCCEEEEEEccCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 626 DRLVVDWTD-LHEMVTAACYTPDGQNALIGSH-K-GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 626 ~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~-d-g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
......+.. .......++++|.+..|+.... . +.|..+++......... .........+++++++..++
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~--------~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--------CSSCSCEEEEEEETTTTEEE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE--------ECCCCCceEEEEeccCCEEE
Confidence 765444433 3356889999997666665543 2 68888888654322111 12345678999999875666
Q ss_pred EEEeCCCcEEEEeCCcc-eEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 703 LVTSADSRIRILDGLDI-VHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~-~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++-...+.|..+|.... ...+... ........+++. .+.++++-...+.|..++..++
T Consensus 180 ~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 66667789999996532 2222221 122345677775 3555666666788998887664
No 261
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.78 E-value=0.0049 Score=70.93 Aligned_cols=203 Identities=12% Similarity=0.086 Sum_probs=114.5
Q ss_pred CCEEEEEecC-CcEEEEEeCCC----c-EEEEECCCCcE-EEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDK----T-VRLWDMETKSC-LKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~Dg----t-V~IWDl~t~~~-i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
....+|++++ ++ |+.+...+ . +...+...+.. ...+........++++|.++.++++-..++.|+.+|..++
T Consensus 182 ~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 182 GQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp SCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 3467888888 56 44444321 1 33333222111 1222334556778898855566666667788999999877
Q ss_pred eE-EEEec--CCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCC--Cceeeeeeeeec--c-------cccCCCCCeEEE
Q 002086 628 LV-VDWTD--LHEMVTAACYTPDGQNALIG-SHKGSCRLYSIED--SKLHQLNQVDFQ--T-------KKKSSTRKITGF 692 (969)
Q Consensus 628 ~~-~~~~~--~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~~--~~~~~~~~~~~~--~-------~~~~h~~~It~l 692 (969)
.+ ..+.. .......++|+|++++|+++ ...+.|+.++... +.+.....+.-. . ...........+
T Consensus 261 ~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi 340 (433)
T 4hw6_A 261 TLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQG 340 (433)
T ss_dssp CEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEE
T ss_pred eEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccE
Confidence 65 22222 22334579999999965554 4567899988753 322110000000 0 001123446778
Q ss_pred EE---------cCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC----------------CCCeEEEEEe-CCCCEEEE
Q 002086 693 QF---------SPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN----------------TSSQISAAFN-ADGKYIIS 746 (969)
Q Consensus 693 ~f---------spd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~----------------~~~V~sl~fs-pdg~~LaS 746 (969)
++ .+++ .++++-...+.|+.++.......+.+... ......++++ ++|.++++
T Consensus 341 av~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 341 IFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp EEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EEEccccccccCCCC-cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 88 5554 55666567788999985443333332211 1235678898 56666666
Q ss_pred EeCCCcEEEEEcC
Q 002086 747 ASEDSQVYVWKRE 759 (969)
Q Consensus 747 gs~Dg~I~IWdl~ 759 (969)
=.....|+.++++
T Consensus 420 D~~n~rIr~i~~e 432 (433)
T 4hw6_A 420 DCDNHRVRKIAPE 432 (433)
T ss_dssp EGGGTEEEEEEEC
T ss_pred eCCCCEEEEEecC
Confidence 6667778887764
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=0.012 Score=72.61 Aligned_cols=197 Identities=8% Similarity=0.045 Sum_probs=128.8
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
..|.++...++..|..|+.++-|.+||..++...... .....|.++...+ ++. |..|+.++-|..+|..+++..
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEEE
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcEE
Confidence 4688888887667778887777999998765433211 1346789998876 555 455777777999999888766
Q ss_pred EEec---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 631 DWTD---LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 631 ~~~~---~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.... ....|.++...++|. |.+|+. +.|.+||..+++....... .........|.++...+++ .|.+|+.
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g--~lWigt~ 513 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDT---SNSQLLENFVRSIAQDSEG--RFWIGTF 513 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECT---TTSSCSCSCEEEEEECTTC--CEEEEES
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccC---cccccccceeEEEEEcCCC--CEEEEEc
Confidence 5542 246799999888875 555565 5688999887654332110 0001124678999988876 5666776
Q ss_pred CCcEEEEeCCcceE-EEEee--cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 708 DSRIRILDGLDIVH-KFRGF--RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 708 Dg~I~IwD~~~~~~-~~~~~--~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++.|..||...... .+... .....|.++...++|.+.++.. +|.|..||..+.
T Consensus 514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 55688888654322 22111 1234678898888888665544 665588887763
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.0073 Score=69.36 Aligned_cols=203 Identities=13% Similarity=0.137 Sum_probs=113.2
Q ss_pred CCEEEEEecC-CcEEEEEeC-CC----cEEEEECCCCcEE--EEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 555 DDVLDLSWSR-SHLLLSSSM-DK----TVRLWDMETKSCL--KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~-Dg----tV~IWDl~t~~~i--~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
.....|+|++ +++|+.+.. ++ .+.+.+.. +... ..+........++++|.++.++++-..++.|..++..+
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 4467888988 664555543 22 23334432 2211 23333445678889985566666666778999999987
Q ss_pred ceEEEEec--CCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCC--ceeeeeeeeec--cc-------ccCCCCCeE-E
Q 002086 627 RLVVDWTD--LHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDS--KLHQLNQVDFQ--TK-------KKSSTRKIT-G 691 (969)
Q Consensus 627 ~~~~~~~~--~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~~--~~~~~~~~~~~--~~-------~~~h~~~It-~ 691 (969)
+....+.. .......++|+|+|++|++ -...+.|..++.... .+.....+.-. .. ......... .
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~g 337 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQG 337 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEE
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcce
Confidence 76533322 2245789999999995555 456788999887642 22111100000 00 000112233 4
Q ss_pred EEEcC--------CCCceEEEEeCCCcEEEEeCCcceEEEEeec-----C-----------CCCeEEEEEeCC-CCEEEE
Q 002086 692 FQFSP--------SNPSEVLVTSADSRIRILDGLDIVHKFRGFR-----N-----------TSSQISAAFNAD-GKYIIS 746 (969)
Q Consensus 692 l~fsp--------d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~-----~-----------~~~V~sl~fspd-g~~LaS 746 (969)
++..+ ++ .++++-...+.|+.++.......+.+.. . ......++++++ +.++++
T Consensus 338 v~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 416 (430)
T 3tc9_A 338 TFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG 416 (430)
T ss_dssp EEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EEEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE
Confidence 55532 23 4444445677888888543333333220 0 124678999994 555555
Q ss_pred EeCCCcEEEEEcC
Q 002086 747 ASEDSQVYVWKRE 759 (969)
Q Consensus 747 gs~Dg~I~IWdl~ 759 (969)
-.....|+.++++
T Consensus 417 D~~n~rIr~i~~e 429 (430)
T 3tc9_A 417 DRENRRIRKIGYE 429 (430)
T ss_dssp EGGGTEEEEEEEC
T ss_pred ECCCCeEEEEccC
Confidence 5556778887764
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.028 Score=69.46 Aligned_cols=200 Identities=9% Similarity=0.091 Sum_probs=125.3
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee--------cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA--------HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--------h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
..|.++...+...|..|+.+ -|.+||..+++...... ....|.++...+ + ..|..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~-g~lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-D-NKLWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT-T-SEEEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-C-CCEEEEeCCCCeEEECCCC
Confidence 46788888775556666666 69999988776543321 245699998876 4 4566666656689999887
Q ss_pred ceEEEEec---------------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee-cccccCCCCCeE
Q 002086 627 RLVVDWTD---------------LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF-QTKKKSSTRKIT 690 (969)
Q Consensus 627 ~~~~~~~~---------------~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~-~~~~~~h~~~It 690 (969)
+....... ....|.++....+|. |.+|+.++-|..|+.............. ..........|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 76443221 235689999998875 6677878889999887665432211000 001122345689
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-E--eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-R--GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++...+++ .|.+|+.++.|.+|+........ . .......|.++...++|.+.+ |+.++.|.+++..++
T Consensus 367 ~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 367 SVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK 437 (781)
T ss_dssp EEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC
T ss_pred EEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC
Confidence 99888766 57778877889999965432111 0 011235688888888887555 666677888887653
No 265
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.67 E-value=0.051 Score=61.61 Aligned_cols=209 Identities=11% Similarity=0.033 Sum_probs=132.7
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCC----cEEEEee-cCCCeEEEEEecCCCCEEEEEECC
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETK----SCLKLFA-HNDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~----~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
......+......+.+|+|.+ ++.| ++-...+.|+.+++... .....+. .......|++.+..++++++-...
T Consensus 101 ~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~ 180 (400)
T 3p5b_L 101 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 180 (400)
T ss_dssp SCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCC
Confidence 333334444567789999997 4544 44456788999998762 2333333 445678999987455666666677
Q ss_pred CeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 617 AKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
+.|.+.++.......+.. .......|++.|.+.+|+.... .+.|...++......... .........|+
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~--------~~~l~~P~gla 252 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGIT 252 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE--------CSSCSCEEEEE
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE--------ECCCCceEEEE
Confidence 899999998765554443 3356899999997766666542 478999988765432211 12335678999
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCcce-EEE-EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLDIV-HKF-RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~~~-~~~-~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+++++..++++-...+.|..+|..... ..+ ...........+++. .+.++++-...+.|..++..++
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 998875555665677889999864322 222 221223344567763 3445566666788988886664
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.67 E-value=0.00062 Score=82.73 Aligned_cols=202 Identities=12% Similarity=0.095 Sum_probs=111.4
Q ss_pred EEEecC-CcEEEEEe-CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEE-CC-----CeEEEEeCCCce
Q 002086 559 DLSWSR-SHLLLSSS-MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGS-LD-----AKVRIWSISDRL 628 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs-~D-----g~I~IWDl~~~~ 628 (969)
++++.. +.+++.|+ .+..+.+||..+.+....- .....-.++++.+ ++.+++.|+ .+ ..+.+||..++.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 455554 77888887 4568999999887655432 1222223455555 788888888 44 569999998876
Q ss_pred EEEEec-----CCCCEEEEEEccCCCEEEEEeCCC---------cEEEEEcCCCceeeeeeeeecc-cccCCCCCeEEEE
Q 002086 629 VVDWTD-----LHEMVTAACYTPDGQNALIGSHKG---------SCRLYSIEDSKLHQLNQVDFQT-KKKSSTRKITGFQ 693 (969)
Q Consensus 629 ~~~~~~-----~~~~V~sv~fspdg~~Lasgs~dg---------~I~IwDl~~~~~~~~~~~~~~~-~~~~h~~~It~l~ 693 (969)
-..... ....-....+..++..++.|+.+| .+..||..+............. ........-.++.
T Consensus 326 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 444311 000000112234555566665544 4678888776543211110000 0000111234455
Q ss_pred EcCCCCceEEEEeCCC-----------cEEEEeCCcceEEEE---eecCCCCeEEEEEeCCCCEEEEEeCC---------
Q 002086 694 FSPSNPSEVLVTSADS-----------RIRILDGLDIVHKFR---GFRNTSSQISAAFNADGKYIISASED--------- 750 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg-----------~I~IwD~~~~~~~~~---~~~~~~~V~sl~fspdg~~LaSgs~D--------- 750 (969)
|...+..++++|+.++ .|.+||.....-... .......-.+++..|+|++++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 5444447778877542 577888654322221 11111222355677899999999865
Q ss_pred --CcEEEEEcCCC
Q 002086 751 --SQVYVWKREEH 761 (969)
Q Consensus 751 --g~I~IWdl~t~ 761 (969)
..+.+||..+.
T Consensus 486 ~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 486 PVFTPEIYVPEQD 498 (656)
T ss_dssp BCCCCEEEEGGGT
T ss_pred cccceEEEcCCCC
Confidence 46889998763
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.63 E-value=0.0034 Score=75.20 Aligned_cols=101 Identities=10% Similarity=0.005 Sum_probs=69.0
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCe---------------------------------------EEEEEecCCCCEEEEE
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYV---------------------------------------TCIQFNPMDDDYFISG 613 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V---------------------------------------~sv~fsp~~~~~L~sg 613 (969)
.++.|+.+|..+|+.+-.+...... ..+++.+ ...+++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3899999999999998776332211 1346666 66777777
Q ss_pred ECC----------------CeEEEEeCCCceEEEEecCC-C---------CEEEEEEc-cCC---CEEEEEeCCCcEEEE
Q 002086 614 SLD----------------AKVRIWSISDRLVVDWTDLH-E---------MVTAACYT-PDG---QNALIGSHKGSCRLY 663 (969)
Q Consensus 614 s~D----------------g~I~IWDl~~~~~~~~~~~~-~---------~V~sv~fs-pdg---~~Lasgs~dg~I~Iw 663 (969)
..+ +.|..+|..+++++-.+... . ...-+... .+| ..++.++.+|.++++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence 655 37999999999887543321 1 11112232 567 467778999999999
Q ss_pred EcCCCceeeee
Q 002086 664 SIEDSKLHQLN 674 (969)
Q Consensus 664 Dl~~~~~~~~~ 674 (969)
|..+++.+...
T Consensus 339 D~~tG~~lw~~ 349 (599)
T 1w6s_A 339 DRTDGALVSAN 349 (599)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEeecc
Confidence 99999876543
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.57 E-value=0.0026 Score=78.61 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=82.7
Q ss_pred EEEecC-CcEEEEEeCC-----CcEEEEECCCCcE--EEEe--ecCCCeEEEEEecCCCCEEEEEEC---CCeEEEEeCC
Q 002086 559 DLSWSR-SHLLLSSSMD-----KTVRLWDMETKSC--LKLF--AHNDYVTCIQFNPMDDDYFISGSL---DAKVRIWSIS 625 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~D-----gtV~IWDl~t~~~--i~~~--~h~~~V~sv~fsp~~~~~L~sgs~---Dg~I~IWDl~ 625 (969)
.+.|+| ++.|+....| ..|+++++.+++. ..++ ........+.|+| ++.+|+..+. ...|+++|+.
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 467888 5666666654 3688899987642 2333 3334567889999 8888776553 3468889998
Q ss_pred Cc--eE--EEEecC-CCCEEEEEEccCCCEEEEEe-CC--C--cEEEEEcCCC-ceee-eeeeeecccccCCCCCeEEEE
Q 002086 626 DR--LV--VDWTDL-HEMVTAACYTPDGQNALIGS-HK--G--SCRLYSIEDS-KLHQ-LNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 626 ~~--~~--~~~~~~-~~~V~sv~fspdg~~Lasgs-~d--g--~I~IwDl~~~-~~~~-~~~~~~~~~~~~h~~~It~l~ 693 (969)
++ .. ..+... ......+.|+. |..|+..+ .+ + .|..+++.+. .... . + . ......+..+.
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l--i--~---~~~~~~l~~~~ 375 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL--V--D---HSEDVFMESIA 375 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE--E--C---CCSSEEEEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE--E--C---CCCCcEEEEEE
Confidence 75 33 333332 24445555544 55555444 33 2 5666676542 2111 1 0 0 11111345555
Q ss_pred EcCCCCceEEEEeCCCc--EEEEeC
Q 002086 694 FSPSNPSEVLVTSADSR--IRILDG 716 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~--I~IwD~ 716 (969)
+. +..++++...++. |++++.
T Consensus 376 ~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 376 VR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EE--CCEEEEEEEeCCEEEEEEEec
Confidence 54 4356677777776 455564
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.57 E-value=0.015 Score=63.53 Aligned_cols=179 Identities=8% Similarity=-0.054 Sum_probs=114.9
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC----ceEEEEec-CCCCEEEEEEccCC
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD----RLVVDWTD-LHEMVTAACYTPDG 648 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~----~~~~~~~~-~~~~V~sv~fspdg 648 (969)
...|+..|+.+.+....+.....+.+++|++.++.++++-...+.|..+++.+ ........ ....+..+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 35689999998877776666677899999983344555555678999999876 22222222 22456789998755
Q ss_pred CEEE-EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCcceEEEEee
Q 002086 649 QNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 649 ~~La-sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~~~~~~~~~ 726 (969)
..|+ +-...+.|.++++......... .........+++.|.+..++++.... +.|..++...........
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~--------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEE--------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEE--------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 5554 5556789999998765432211 12234678999999774455554443 688888854332222222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 727 RNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
........+++++++..|+.+. ..+.|..++++.
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 2334567899999877666554 567899999874
No 270
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.018 Score=66.97 Aligned_cols=207 Identities=8% Similarity=0.074 Sum_probs=119.1
Q ss_pred CEEEEEe-------cC-CcEEEEEeCCC-------cEEEEECCC-CcEE-----EEeecCCCeEEEEEecCCCCEEEEEE
Q 002086 556 DVLDLSW-------SR-SHLLLSSSMDK-------TVRLWDMET-KSCL-----KLFAHNDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 556 ~I~~l~f-------s~-~~~L~Sgs~Dg-------tV~IWDl~t-~~~i-----~~~~h~~~V~sv~fsp~~~~~L~sgs 614 (969)
....|+| ++ ++.|+.+...+ .|.+.+... +... ..+.--.....++++|.++.++++-.
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence 4677888 77 56555555443 266666443 1221 22222234457788985566677777
Q ss_pred CCCeEEEEeCC-------CceE--------------EEEecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCC--Cce
Q 002086 615 LDAKVRIWSIS-------DRLV--------------VDWTDLHEMVTAACYTPDGQNALIG-SHKGSCRLYSIED--SKL 670 (969)
Q Consensus 615 ~Dg~I~IWDl~-------~~~~--------------~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~~--~~~ 670 (969)
.++.|..+|+. ++.+ +...........|+|+|+|++|.++ +....|+.++... +.+
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~ 346 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF 346 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCccee
Confidence 88899999997 4443 1122233456899999999965554 4677888866543 222
Q ss_pred eeeeeeeec--cc-------ccCCCCCeE-EEEEc-------CCCCceEEEEeCCCcEEEEeCCcceEEEEeecC-----
Q 002086 671 HQLNQVDFQ--TK-------KKSSTRKIT-GFQFS-------PSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN----- 728 (969)
Q Consensus 671 ~~~~~~~~~--~~-------~~~h~~~It-~l~fs-------pd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~----- 728 (969)
.....+.-. .. ......... .++.. +.+ .++++-...++|+.++....+..+.+...
T Consensus 347 ~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 347 ITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLA 425 (496)
T ss_dssp CCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHH
T ss_pred cccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCCEEEEeccccccccc
Confidence 100000000 00 011122344 45554 333 55666677889999985544444443211
Q ss_pred -----------------CCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCCc
Q 002086 729 -----------------TSSQISAAFNAD-GKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 729 -----------------~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
......|+++++ |.++++=.....|+.++++....
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 123568899997 76666666678899999887443
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.54 E-value=0.031 Score=62.09 Aligned_cols=195 Identities=9% Similarity=-0.026 Sum_probs=125.8
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL- 635 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~- 635 (969)
..|....+..+|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.......+...
T Consensus 36 ~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 36 RSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp SCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred CcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 3455555544554443 45688889887777666655567899999983444555555678899999987765444332
Q ss_pred CCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEE
Q 002086 636 HEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRI 713 (969)
Q Consensus 636 ~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~I 713 (969)
......+++.+.+..| ++-...+.|.++++......... .........+++.|.+..++++-... +.|..
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~--------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE--------eCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 2456789999865555 45556789999998765422111 22335578999999775556665555 78888
Q ss_pred EeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 714 LDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 714 wD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
++...................++|+|++..|..+. ..+.|..++++.
T Consensus 187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 88553322222122334467899998766665554 467799999874
No 272
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.46 E-value=0.016 Score=69.15 Aligned_cols=191 Identities=7% Similarity=-0.078 Sum_probs=114.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCC-----CeEE-EEEecCCCCEEEEEEC------CCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHND-----YVTC-IQFNPMDDDYFISGSL------DAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~-----~V~s-v~fsp~~~~~L~sgs~------Dg~I~IWDl~~~~~~~~ 632 (969)
+..++.++.|+.|..+|..+|+.+-.+.... .+.+ ..+ .+..+++++. ++.|..+|..+++++-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4678888899999999999999887663222 2221 112 1345666554 79999999999987754
Q ss_pred ecCCCCE---------------------------------------EEEEEccCCCEEEEEeCC----------------
Q 002086 633 TDLHEMV---------------------------------------TAACYTPDGQNALIGSHK---------------- 657 (969)
Q Consensus 633 ~~~~~~V---------------------------------------~sv~fspdg~~Lasgs~d---------------- 657 (969)
....... ..+++.++...++.++.+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 3322111 235677777777776642
Q ss_pred CcEEEEEcCCCceeeeeeeeeccc--ccCCCCCeEEEEEcCCCC--ceEEEEeCCCcEEEEeCCcceEEEEeecCC----
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTK--KKSSTRKITGFQFSPSNP--SEVLVTSADSRIRILDGLDIVHKFRGFRNT---- 729 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~--~~~h~~~It~l~fspd~~--~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~---- 729 (969)
+.|..+|..+++..-..+...... ......++. +....++. ..++.++.+|.++++|..+...........
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 359999999998764433210000 001122222 22223442 256778889999999966544333221110
Q ss_pred ---------CCe--------------------------EEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 730 ---------SSQ--------------------------ISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 730 ---------~~V--------------------------~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.++ ..++|+|+..+|+....+....++...
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 415 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccc
Confidence 011 236789988899888877666665543
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.46 E-value=0.041 Score=60.32 Aligned_cols=197 Identities=5% Similarity=-0.006 Sum_probs=127.4
Q ss_pred CCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEE-EEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCL-KLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i-~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
..+.++.|.+ +.++.+-...+.|..+++..+... ..+ ..-.....+++.+..+.++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 4567889987 455555567788999998876421 122 233456789998745556666666789999999865444
Q ss_pred EEe-cCCCCEEEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 631 DWT-DLHEMVTAACYTPDGQNALIGS--HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 631 ~~~-~~~~~V~sv~fspdg~~Lasgs--~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.+. ........+++.|.+..|+... ..+.|..+++......... .........|++++++..++++-+.
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII--------NSEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE--------ECCCCCccEEEEeccCCEEEEEECC
Confidence 333 3446689999999766666655 3578888888754322111 1223456899999977566666677
Q ss_pred CCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 708 DSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 708 Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+.|..+|.... ...+. .........+++.. +.++++-...+.|..++..++
T Consensus 187 ~~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp TTEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 888999986532 22222 12233456777753 345556556788999988764
No 274
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.46 E-value=0.0091 Score=71.37 Aligned_cols=145 Identities=10% Similarity=0.085 Sum_probs=84.2
Q ss_pred CeEEEEeCCCceEEEEecC--CC--------CEEEEEEc-cCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeeecc--
Q 002086 617 AKVRIWSISDRLVVDWTDL--HE--------MVTAACYT-PDGQ---NALIGSHKGSCRLYSIEDSKLHQLNQVDFQT-- 680 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~--~~--------~V~sv~fs-pdg~---~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~-- 680 (969)
+.|..+|..+++++-.+.. +. ...-+... .+|+ .++.++.+|.++++|..+++.+....+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 6899999999988754432 11 11112222 4674 6788999999999999999876543321100
Q ss_pred --c-------------cc---------CCCC-----------CeEEEEEcCCCCceEEEEe-------------------
Q 002086 681 --K-------------KK---------SSTR-----------KITGFQFSPSNPSEVLVTS------------------- 706 (969)
Q Consensus 681 --~-------------~~---------~h~~-----------~It~l~fspd~~~~l~sgs------------------- 706 (969)
. .. .... .-..++++|+.. ++++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTSC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCCc
Confidence 0 00 0000 011345666553 333322
Q ss_pred --------------CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 707 --------------ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 707 --------------~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
.++.|+.||..+.....+.... ..+..-.....+.+++.++.||.|+.||.++++.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 2578889997765554443222 1222112223567888899999999999998543
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.41 E-value=0.088 Score=55.78 Aligned_cols=206 Identities=10% Similarity=0.145 Sum_probs=124.3
Q ss_pred eEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.|.+-.+.+..|+|+|++. +++....++.|...|.. ++.+..+.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~--------------------------------- 65 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP--------------------------------- 65 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE---------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe---------------------------------
Confidence 35667778899999999766 44556778888888887 66655321
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE---EEEe-------e
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC---LKLF-------A 592 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~---i~~~-------~ 592 (969)
+.+ ....-.|++.+ +.++++.-.++.+.++++..... +... .
T Consensus 66 --------------------------l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~ 118 (255)
T 3qqz_A 66 --------------------------LDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESP 118 (255)
T ss_dssp --------------------------CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCC
T ss_pred --------------------------cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccccc
Confidence 011 13456677777 44445555677888888765442 1222 2
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC----c--eEEEE-----ecCCCCEEEEEEccCCCE-EEEEeCCCcE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD----R--LVVDW-----TDLHEMVTAACYTPDGQN-ALIGSHKGSC 660 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~----~--~~~~~-----~~~~~~V~sv~fspdg~~-Lasgs~dg~I 660 (969)
.+.....|+|+| .++.|+++.......||.+.. . .+... ......+..++++|.... ++.......+
T Consensus 119 ~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 119 TNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL 197 (255)
T ss_dssp CSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence 345579999999 666666665554444554431 1 12111 011235789999997554 4556667788
Q ss_pred EEEEcCCCceeeeeeeeec-ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 661 RLYSIEDSKLHQLNQVDFQ-TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 661 ~IwDl~~~~~~~~~~~~~~-~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.++|.... ......+... .........--.|+|.++| . |++.+.-..++.+.
T Consensus 198 ~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 198 QEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEE
T ss_pred EEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEE
Confidence 89997654 4433332210 0011223467899999988 4 55557777777665
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.37 E-value=0.027 Score=63.52 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=123.9
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-CC
Q 002086 559 DLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-HE 637 (969)
Q Consensus 559 ~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-~~ 637 (969)
|.+..+..+|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.......+... ..
T Consensus 81 C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 44444444444443 46788899988776666665667899999984445555556678899999987765544332 23
Q ss_pred CEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEe
Q 002086 638 MVTAACYTPDGQNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILD 715 (969)
Q Consensus 638 ~V~sv~fspdg~~La-sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD 715 (969)
....+++.+.+..|+ +-...+.|.++++......... .........+++.|.+..++++-... +.|+.++
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~--------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE--------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee--------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 457788987655554 4555778888888754322111 22335678999999775555555555 7888888
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISA-SEDSQVYVWKREE 760 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg-s~Dg~I~IWdl~t 760 (969)
...................++|+|++..|..+ ...+.|..++++.
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 65433222222233446789999876666555 4467799998864
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.28 E-value=0.14 Score=63.31 Aligned_cols=206 Identities=11% Similarity=0.029 Sum_probs=128.4
Q ss_pred eeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCC----cEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 547 FCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETK----SCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~----~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
+..+......+.+|+|.+ + .++++-...+.|+.+++... ....++. .......|++.+..++++++-...+.|
T Consensus 416 ~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 334444566788999987 4 45555566788999998753 2233333 445678899988444566666677899
Q ss_pred EEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 620 RIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+.++.......+.. .......|++.|.+.+|+.... .+.|.+.++......... .........|++.+
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv--------~~~l~~P~GLavD~ 567 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGITLDL 567 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--------CSSCSCEEEEEEET
T ss_pred EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE--------eCCCCCceEEEEec
Confidence 999998766554443 3356899999998666666543 368999988765443221 22345688999998
Q ss_pred CCCceEEEEeCCCcEEEEeCCcce--EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIV--HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+..++++-.....|..++..... ..............|++.. +.++++-...+.|...+..++
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 775555555667789998864322 2222212223345666643 234444445677888876664
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.27 E-value=0.046 Score=61.99 Aligned_cols=186 Identities=8% Similarity=-0.047 Sum_probs=119.9
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEec-CCCCEE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTD-LHEMVT 640 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~-~~~~V~ 640 (969)
.+|+.+. ...|+..++..............+..|+|++.++.++++-...+.|+.+++... ....... ......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3444443 467899999888777777777789999999844445555556788999998762 2233333 345678
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC-CCcEEEEeCCc
Q 002086 641 AACYTPDGQNA-LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA-DSRIRILDGLD 718 (969)
Q Consensus 641 sv~fspdg~~L-asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~-Dg~I~IwD~~~ 718 (969)
.+++.+.+..| ++-...+.|.+.++......... .........|++.|.++.++++-.. .+.|...+...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 99999854444 45556789999998766433221 1234457899999976444444433 47888888654
Q ss_pred ceEEEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 719 IVHKFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 719 ~~~~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
................|++++++..|+.+. ..+.|..+|++.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 332222222334568899998777776664 457899999875
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.20 E-value=0.011 Score=72.78 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=110.0
Q ss_pred CEEEEEec-C-CcEEEEEe-CCC----cEEEEECCCC-cEEEE-eecCCCeEEEEEecCCCCEEEEEECC-----CeEEE
Q 002086 556 DVLDLSWS-R-SHLLLSSS-MDK----TVRLWDMETK-SCLKL-FAHNDYVTCIQFNPMDDDYFISGSLD-----AKVRI 621 (969)
Q Consensus 556 ~I~~l~fs-~-~~~L~Sgs-~Dg----tV~IWDl~t~-~~i~~-~~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~I 621 (969)
.+....|+ | +++|+.+. .+| +|+++|+.++ +.+.. +. .....+.|+| +++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence 67889999 8 66666543 333 5999999998 63211 11 1135678999 88777766655 36888
Q ss_pred EeCCCce---EEEEe-cCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceee-eeeeeecccccCCCCCeEEEE
Q 002086 622 WSISDRL---VVDWT-DLHEMVTAACYTPDGQNALIGSH---KGSCRLYSIEDSKLHQ-LNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 622 WDl~~~~---~~~~~-~~~~~V~sv~fspdg~~Lasgs~---dg~I~IwDl~~~~~~~-~~~~~~~~~~~~h~~~It~l~ 693 (969)
+++.++. .+.+. ........+.|+|||++|+.... ...|+++|+.++.... ... + ..........+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~--l---~~~~~~~~~s~~ 326 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI--V---RPREKGVRYDVQ 326 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE--S---SCCCTTCCEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE--e---ecCCCCceEEEe
Confidence 8987753 22222 22345678899999999887653 3468888887652110 000 0 022234455555
Q ss_pred EcCCCCceEEEEeCC----CcEEEEeCCc--ceEE-EEeecCCCCeEEEEEeCCCCEEEEEeCCCc--EEEEEc
Q 002086 694 FSPSNPSEVLVTSAD----SRIRILDGLD--IVHK-FRGFRNTSSQISAAFNADGKYIISASEDSQ--VYVWKR 758 (969)
Q Consensus 694 fspd~~~~l~sgs~D----g~I~IwD~~~--~~~~-~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~--I~IWdl 758 (969)
|+. +..+++.+..+ ..|..++... .... +..+.....+..+.+. .+.++++...++. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 544 43555555544 3577777643 1122 2222222234455554 3345566777776 455554
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.09 E-value=0.35 Score=52.85 Aligned_cols=187 Identities=7% Similarity=0.083 Sum_probs=101.1
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee----cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA----HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
..+.+|.|.++..++ ++.++.|.. ....++...... +...+..|.+.+ ++..++ ++.+|.|.. ....++.-
T Consensus 80 ~~~~~i~~~~~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~~~g~v~~-S~DgG~tW 154 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEM-ITNVGAIYR-TKDSGKNW 154 (327)
T ss_dssp CEEEEEEEETTEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEE-EETTCCEEE-ESSTTSSE
T ss_pred ccEEEEEecCCeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEE-EeCCccEEE-EcCCCCCC
Confidence 356778887644444 455665443 333344333321 335578888876 454444 445665432 22223211
Q ss_pred --EEecCCCCEEEEEEccCCCEEEEEeCCCcEEE-EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 631 --DWTDLHEMVTAACYTPDGQNALIGSHKGSCRL-YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 631 --~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~I-wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
........+..+.+.+++.+++++. .|.+.. .|- .+..-.... ......+..+.+.+++ .+++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~-------~~~~~~~~~~~~~~~g--~~~~~~~ 223 (327)
T 2xbg_A 155 QALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHN-------RTTSRRLHNMGFTPDG--RLWMIVN 223 (327)
T ss_dssp EEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEE-------CCSSSCEEEEEECTTS--CEEEEET
T ss_pred EEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECC-------CCCCCccceeEECCCC--CEEEEeC
Confidence 1223345688999999988777665 454443 332 122111110 2234578889998876 4556667
Q ss_pred CCcEEEEeCCcceEEEEeec-----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 708 DSRIRILDGLDIVHKFRGFR-----NTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~~~~~~-----~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+|.+++.+.. .-..+.... ....+..+.+.+++.+++++. +|.| ++..+.
T Consensus 224 ~G~~~~s~~D-~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~Dg 278 (327)
T 2xbg_A 224 GGKIAFSDPD-NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDG 278 (327)
T ss_dssp TTEEEEEETT-EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESST
T ss_pred CceEEEecCC-CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCC
Confidence 8888877411 111121111 223478899998887776655 6766 444554
No 281
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.09 E-value=0.06 Score=58.97 Aligned_cols=199 Identities=9% Similarity=0.115 Sum_probs=124.4
Q ss_pred CEEEEEecC-CcEEEEEe-CCCcEEEEECCCCcEEEE-eec-----C--CCeEEEEE---ecCCCCEEEEEE--------
Q 002086 556 DVLDLSWSR-SHLLLSSS-MDKTVRLWDMETKSCLKL-FAH-----N--DYVTCIQF---NPMDDDYFISGS-------- 614 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~~~i~~-~~h-----~--~~V~sv~f---sp~~~~~L~sgs-------- 614 (969)
--.++.|.+ ...|+.++ ..++|..||...+....+ +.. . ..+..|.| .| ++.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 344788987 55666665 799999999986655444 222 1 14689999 57 666666543
Q ss_pred -----CCCeEEEEeCC---CceEEEEecC--------------CCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCcee
Q 002086 615 -----LDAKVRIWSIS---DRLVVDWTDL--------------HEMVTAACYTPDGQNALIGSHK-GSCRLYSIEDSKLH 671 (969)
Q Consensus 615 -----~Dg~I~IWDl~---~~~~~~~~~~--------------~~~V~sv~fspdg~~Lasgs~d-g~I~IwDl~~~~~~ 671 (969)
.+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++.......
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 26779999999 6665543332 1247899999999999999888 88888877655332
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-EEEee--c---CCCCeEEE-EEeCCCCE-
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGF--R---NTSSQISA-AFNADGKY- 743 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-~~~~~--~---~~~~V~sl-~fspdg~~- 743 (969)
.. . ............+.|+++|++ ..|++....+.|..+|+..... .+... . .......+ ..-.+|+.
T Consensus 173 ~~-~--~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 173 TF-A--WESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EE-E--ECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred ee-e--ecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 11 1 111112234557899999998 5666665599999999775433 12111 1 11122332 33347777
Q ss_pred EEEEeCCCcEEEEEcC
Q 002086 744 IISASEDSQVYVWKRE 759 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~ 759 (969)
|++.+..+.+.+.+-+
T Consensus 249 lV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 249 LVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEETTEEEEEECSS
T ss_pred EEEcCCCCEEEEECCC
Confidence 5555556555555443
No 282
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.08 E-value=0.0079 Score=73.19 Aligned_cols=194 Identities=14% Similarity=0.098 Sum_probs=123.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC-----------e-EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY-----------V-TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~-----------V-~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
+..|+.++.++.|..+|..+|+.+-.+..... + ..+++ .+..+++++.|+.|..+|..+++++-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 67888888899999999999999887732211 1 12333 356788888999999999999987754
Q ss_pred ecCC-----CCEEE-EEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeeccccc-----------------
Q 002086 633 TDLH-----EMVTA-ACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKK----------------- 683 (969)
Q Consensus 633 ~~~~-----~~V~s-v~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~----------------- 683 (969)
.... ..+.. ..+ .+..++++.. +|.|+.||..+++..-...........
T Consensus 143 ~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 4331 11111 111 1345666543 589999999999876544321000000
Q ss_pred ------CCCCCeEEEEEcCCCCceEEEEeCCC-------------------cEEEEeCCcceEEEEeec--CC-------
Q 002086 684 ------SSTRKITGFQFSPSNPSEVLVTSADS-------------------RIRILDGLDIVHKFRGFR--NT------- 729 (969)
Q Consensus 684 ------~h~~~It~l~fspd~~~~l~sgs~Dg-------------------~I~IwD~~~~~~~~~~~~--~~------- 729 (969)
........+++.|.. ..+++++.++ .|..+|..+......... +.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 011122346788876 5777777665 388999776655554332 11
Q ss_pred CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 002086 730 SSQISAAFNADGK---YIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 730 ~~V~sl~fspdg~---~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
.......+..+|+ +|+.++.+|.|+++|..+++.+
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 2233333445775 7899999999999999996544
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.019 Score=65.83 Aligned_cols=157 Identities=11% Similarity=0.150 Sum_probs=100.2
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC----cEEEEEcCCCce
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG----SCRLYSIEDSKL 670 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg----~I~IwDl~~~~~ 670 (969)
....|+++|.++..|+++...+.|+.+|+.++.+..+.........++|+++|++|+++.. ++ .+.+++.. +..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 5578899872134455554448899999998887777666677899999999996666654 22 23334432 222
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-EEEeecCCCCeEEEEEeCCCCEEE-EEe
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGFRNTSSQISAAFNADGKYII-SAS 748 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-~~~~~~~~~~V~sl~fspdg~~La-Sgs 748 (969)
.....+ . .......++++|++..++++-..++.|+.++...... .+...........++|+|+|++|+ +-.
T Consensus 217 ~~~~~l--~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 217 KVITEL--T-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp CSEEEE--E-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eeeeee--c-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 111111 0 1234567889995436666666788999999764433 222222223467899999999554 445
Q ss_pred CCCcEEEEEcCC
Q 002086 749 EDSQVYVWKREE 760 (969)
Q Consensus 749 ~Dg~I~IWdl~t 760 (969)
..+.|+.++.+.
T Consensus 290 ~~~~I~~~~~d~ 301 (430)
T 3tc9_A 290 NQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCEEEEEeCCc
Confidence 577899988764
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.97 E-value=0.082 Score=58.41 Aligned_cols=187 Identities=13% Similarity=0.221 Sum_probs=117.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC---CCC---EEEEEEC---CCeEEEEeC--CCceEEEEe
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM---DDD---YFISGSL---DAKVRIWSI--SDRLVVDWT 633 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~---~~~---~L~sgs~---Dg~I~IWDl--~~~~~~~~~ 633 (969)
..+++.....+-+.+||+ .|+.+..+.. +.++.+..-|. .+. ++++... +++|.+|++ .++.+....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 356777788889999999 8888887754 66777777660 111 2333333 578999976 455543332
Q ss_pred c------CC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 634 D------LH-EMVTAACY--TPD-GQ-NALIGSHKGSCRLYSIED---SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 634 ~------~~-~~V~sv~f--spd-g~-~Lasgs~dg~I~IwDl~~---~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
. .. ..+..+|+ +|. +. ++++...+|.+..|++.. +.......-. ......+-.+...+..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~-----f~lgsq~EgcvvDd~~- 191 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA-----FKMNSQTEGMAADDEY- 191 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE-----EECSSCEEEEEEETTT-
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE-----ecCCCCcceEEEcCCC-
Confidence 1 11 45667787 674 44 678888899999999843 2221111111 1123468888898866
Q ss_pred ceEEEEeCCCcEEEEeCC--c--ceEEEEee--cC-CCCeEEEEE--eCCCC-EEEEEe-CCCcEEEEEcC
Q 002086 700 SEVLVTSADSRIRILDGL--D--IVHKFRGF--RN-TSSQISAAF--NADGK-YIISAS-EDSQVYVWKRE 759 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~--~--~~~~~~~~--~~-~~~V~sl~f--spdg~-~LaSgs-~Dg~I~IWdl~ 759 (969)
..|+++-.+..|..++.. . ........ .+ ...+..|++ .++++ ||++++ .+..+.+||..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 689999998777777733 1 11122221 11 235777777 55666 677666 57799999996
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.96 E-value=0.0091 Score=72.40 Aligned_cols=233 Identities=9% Similarity=0.006 Sum_probs=125.0
Q ss_pred cccCEEEEEEeCCCCEEEEEeC-CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~-DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+.....++++..++++++.||. +..+.+||..+++-.....
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-------------------------------------- 282 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-------------------------------------- 282 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC--------------------------------------
T ss_pred CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC--------------------------------------
Confidence 3334446788899999999984 5689999988764332100
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEec-CCcEEEEEe-CC-----CcEEEEECCCCcEEEEe-----ecCCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS-RSHLLLSSS-MD-----KTVRLWDMETKSCLKLF-----AHNDY 596 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-~~~~L~Sgs-~D-----gtV~IWDl~t~~~i~~~-----~h~~~ 596 (969)
+...... .+++.. .+++++.|+ .+ ..+.+||..+.+....- .....
T Consensus 283 ---------------------~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~ 340 (656)
T 1k3i_A 283 ---------------------MQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 340 (656)
T ss_dssp ---------------------CSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred ---------------------CCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccc
Confidence 0000001 123334 467778877 34 57999999987755431 00000
Q ss_pred eEEEEEecCCCCEEEEEECC---------CeEEEEeCCCceEEEEecC----------CCCEEEEEEcc-CCCEEEEEeC
Q 002086 597 VTCIQFNPMDDDYFISGSLD---------AKVRIWSISDRLVVDWTDL----------HEMVTAACYTP-DGQNALIGSH 656 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~D---------g~I~IWDl~~~~~~~~~~~----------~~~V~sv~fsp-dg~~Lasgs~ 656 (969)
-....+.. ++..++.|+.+ ..+..||..+..-...... ...-.++.|.. +++.+++|+.
T Consensus 341 ~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 341 DKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp CTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 00011112 34445555444 3567888877653322111 11234455543 6777788875
Q ss_pred CC-----------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-----------CcEEEE
Q 002086 657 KG-----------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-----------SRIRIL 714 (969)
Q Consensus 657 dg-----------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-----------g~I~Iw 714 (969)
++ .|.+||..+........ ........-.+++..|++ .++++|+.+ ..+.+|
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-----~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFAS-----NGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECT-----TCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEcc-----CCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEE
Confidence 43 67788887765433210 001111222344566777 678887754 458899
Q ss_pred eCCcceEEEEe-ec-CCCCeEEEEEeCCCCEEEEEeC
Q 002086 715 DGLDIVHKFRG-FR-NTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 715 D~~~~~~~~~~-~~-~~~~V~sl~fspdg~~LaSgs~ 749 (969)
|.....-.... .. .......+.+.+||+.++.|+.
T Consensus 494 dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 494 VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 96543322111 11 1112234556789999999985
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.96 E-value=0.034 Score=63.77 Aligned_cols=196 Identities=9% Similarity=0.037 Sum_probs=117.4
Q ss_pred CEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---C-eEEEEeCCCce
Q 002086 556 DVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD---A-KVRIWSISDRL 628 (969)
Q Consensus 556 ~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D---g-~I~IWDl~~~~ 628 (969)
....|+|.+ +..|+.+...+.|+.+|..++.............+|+|++ +++++++.... . .+..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 345788886 3566666655899999999888777766666789999999 78844444321 1 23333332221
Q ss_pred E-EEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 629 V-VDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 629 ~-~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
. ............++++| +|.++++-..++.|+.+|..++....... . ......-..++|+|++..++++-.
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~-----~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-M-----MDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-E-----CSCCSSCEEEEECTTSSEEEEEET
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-c-----cCCCCCcccEEEeCCCCEEEEEeC
Confidence 1 01111223456788999 66666666677889999998666521110 0 111223357999999844566666
Q ss_pred CCCcEEEEeCCc--c----eEEEEee-c------------CCCCeEEEEE---------eCCCCEEEEEeCCCcEEEEEc
Q 002086 707 ADSRIRILDGLD--I----VHKFRGF-R------------NTSSQISAAF---------NADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 707 ~Dg~I~IwD~~~--~----~~~~~~~-~------------~~~~V~sl~f---------spdg~~LaSgs~Dg~I~IWdl 758 (969)
..+.|+.++... . ...+.+. . .......+++ .++|.++++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 778999977331 1 1122221 1 0122456788 666666666666667777763
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.83 E-value=0.15 Score=56.25 Aligned_cols=142 Identities=12% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCcEEEEEC--CCCcEEEEee-------cC-CCeEEEEE--ecCCCC-EEEEEECCCeEEEEeCC-------CceEEEEe
Q 002086 574 DKTVRLWDM--ETKSCLKLFA-------HN-DYVTCIQF--NPMDDD-YFISGSLDAKVRIWSIS-------DRLVVDWT 633 (969)
Q Consensus 574 DgtV~IWDl--~t~~~i~~~~-------h~-~~V~sv~f--sp~~~~-~L~sgs~Dg~I~IWDl~-------~~~~~~~~ 633 (969)
+++|.+|++ .++. +..++ .. ..+..+|+ +|..+. ++++...+|.+..|++. +.+++..+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 588999966 4444 44442 22 56777888 663343 68888889999999982 33566677
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE--cCCCCceEEEEe-CCCc
Q 002086 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF--SPSNPSEVLVTS-ADSR 710 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f--spd~~~~l~sgs-~Dg~ 710 (969)
.....+..+.+.+....|+++-++..|..|+.+...-.....+... ....-...+..|++ .+++..+|++++ .+.+
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-cCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 7778899999999999999999997777777553221000001000 01222236888887 455533666665 5678
Q ss_pred EEEEeCC
Q 002086 711 IRILDGL 717 (969)
Q Consensus 711 I~IwD~~ 717 (969)
..+||..
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999964
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.82 E-value=0.17 Score=55.30 Aligned_cols=179 Identities=7% Similarity=-0.069 Sum_probs=110.9
Q ss_pred CCcEEEEECCCCc--EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--EEEecCCCCEEEEEEccCCC
Q 002086 574 DKTVRLWDMETKS--CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--VDWTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 574 DgtV~IWDl~t~~--~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~~~~~~V~sv~fspdg~ 649 (969)
...|+..++.... ....+.....+.+++|++.++.++.+-...+.|..+++..+.. ......-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678889988763 2233333456778999984445555656678899999877631 11222224467789987555
Q ss_pred EE-EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcceEEEEeec
Q 002086 650 NA-LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDIVHKFRGFR 727 (969)
Q Consensus 650 ~L-asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~~~~~~~~~ 727 (969)
.| ++-...+.|.++++......... .........+++.|.++.++++-. ..+.|+..+............
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~--------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLF--------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEE--------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEE--------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 44 45556789999998765332111 123456789999987644444432 357888888543222211122
Q ss_pred CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 728 NTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
....-..++|++++..|..+. ..+.|..++++.
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 234457899999766665554 567899999874
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.80 E-value=0.23 Score=61.25 Aligned_cols=180 Identities=8% Similarity=-0.059 Sum_probs=116.9
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEec-CCCCEEEEEEccC
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTD-LHEMVTAACYTPD 647 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~-~~~~V~sv~fspd 647 (969)
....|+..++.......+......+..|+|++..+.++++-...+.|+.+++... ....+.. .......|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 3456888888877766666667788999999844455556566788999998753 2222332 3355778999987
Q ss_pred CCEEE-EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCcceEEEEe
Q 002086 648 GQNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLDIVHKFRG 725 (969)
Q Consensus 648 g~~La-sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~~~~~~~~ 725 (969)
+..|+ +-...+.|.+.++......... .........|++.|.++.++++-... +.|...++.........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~--------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEE--------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEE--------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 76555 4456789999999865432221 12344588999999764444444333 67888886544333333
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 726 FRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
.........|++++.+..|+.+. ....|...+++.
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 33345678999998766666554 456788888865
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.79 E-value=0.56 Score=56.32 Aligned_cols=197 Identities=7% Similarity=0.026 Sum_probs=128.5
Q ss_pred CCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEeec-CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLFAH-NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
..+.+|+|.+ + .++++-..++.|..+++........+.. ......|++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4577899987 4 4555556788999999887655444432 24578899987445566666667889999997654433
Q ss_pred Ee-cCCCCEEEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 632 WT-DLHEMVTAACYTPDGQNALIGS--HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 632 ~~-~~~~~V~sv~fspdg~~Lasgs--~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+. ..-.....|++.|....|+... ..+.|...++......... ........|++++++..++++-...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~---------~~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV---------PNVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE---------CCCCCcceEEEccccCEEEEEECCC
Confidence 33 3345689999999666666554 2568888888765432221 1345678999999875666666777
Q ss_pred CcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 709 SRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+.|..+|.......... ........+++.. +.++++-...+.|...|..+++
T Consensus 188 ~~I~~~d~dG~~~~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 188 NLIESSNMLGLNREVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTSCSCEEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 88999986432222211 1223345777765 4455555557889888876643
No 291
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.78 E-value=0.038 Score=65.98 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=43.1
Q ss_pred CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 616 DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 616 Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
+|.|..||+.+++++-.......+..-.+...+.++++|+.||.++.||.++++.+....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 688999999999877544433333222222346788889999999999999999875543
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.68 E-value=0.053 Score=59.42 Aligned_cols=166 Identities=7% Similarity=0.054 Sum_probs=108.3
Q ss_pred cCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCceEEEE-ecC-----C--CCEEEEEE---ccCCCEEEEEeC----
Q 002086 593 HNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRLVVDW-TDL-----H--EMVTAACY---TPDGQNALIGSH---- 656 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~-~~~-----~--~~V~sv~f---spdg~~Lasgs~---- 656 (969)
......+++|++ ....|+.++ ..++|..||...+..... ... . ..+..+.| .|+++++++...
T Consensus 11 ~~~yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 344566789988 555555555 789999999986654443 221 1 13689999 688777776442
Q ss_pred ---------CCcEEEEEcC---CCceeeeeeeeeccc----ccC-CCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCc
Q 002086 657 ---------KGSCRLYSIE---DSKLHQLNQVDFQTK----KKS-STRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLD 718 (969)
Q Consensus 657 ---------dg~I~IwDl~---~~~~~~~~~~~~~~~----~~~-h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~ 718 (969)
+..+..||+. +++......+.-... ..+ .......++..++| +.+++++.. +.|...+...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCC
Confidence 6789999999 666543322210000 001 22358899999988 677777777 8888887543
Q ss_pred c-eEEEEe-e---cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 719 I-VHKFRG-F---RNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 719 ~-~~~~~~-~---~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
. ...+.. . ......+.++++|+|.+|++....|.|..+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2 222211 1 1122356899999999999887799999999984
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.61 E-value=0.98 Score=49.20 Aligned_cols=190 Identities=8% Similarity=0.040 Sum_probs=100.2
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEE-EEeC--CCceEEE
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVR-IWSI--SDRLVVD 631 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~-IWDl--~~~~~~~ 631 (969)
+..+.+.++..++.++.++.|.. ....++..... .....+..+++.+ ++.+++++ .+|.|. -+|- .+=+.+.
T Consensus 124 ~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~gG~tW~~~~ 200 (327)
T 2xbg_A 124 PRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEPGQTAWEPHN 200 (327)
T ss_dssp EEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECTTCSSCEEEE
T ss_pred eEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCCCCCceeECC
Confidence 45566654333444445665432 22234333222 4556789999998 67666655 445444 3442 1112222
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 632 ~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
......+..+.+.+++..+ +++.+|.+++.+...++.-.... .........+..+.+.+++ .+++++.++.|
T Consensus 201 -~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~----~~~~~~~~~~~~v~~~~~~--~~~~~g~~g~i 272 (327)
T 2xbg_A 201 -RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELL----SPLRRNSVGFLDLAYRTPN--EVWLAGGAGAL 272 (327)
T ss_dssp -CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCB----CTTSSCCSCEEEEEESSSS--CEEEEESTTCE
T ss_pred -CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEecc----CCcccCCcceEEEEecCCC--EEEEEeCCCeE
Confidence 2344678899999988765 44567887776433232211110 0000123458899998865 44555567777
Q ss_pred EEE-eCCcceEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 712 RIL-DGLDIVHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 712 ~Iw-D~~~~~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
+.- |....-...... .....+.++.|.+++ .++.++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 443 222111111111 123456788887555 4666777998776653
No 294
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.55 E-value=0.069 Score=63.85 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=118.7
Q ss_pred CcEEEEEeC-CCcEEEEEC-CCCcEEEEeecCCC------------eEEEEEecCCCCE----EEEEECCCeEEEEeCCC
Q 002086 565 SHLLLSSSM-DKTVRLWDM-ETKSCLKLFAHNDY------------VTCIQFNPMDDDY----FISGSLDAKVRIWSISD 626 (969)
Q Consensus 565 ~~~L~Sgs~-DgtV~IWDl-~t~~~i~~~~h~~~------------V~sv~fsp~~~~~----L~sgs~Dg~I~IWDl~~ 626 (969)
+..|+.++. ++.|.-+|. .+|+.+-.+..... ...+++.| .+.. |+.++.|+.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence 577777887 899999999 99999877743221 12355644 3344 88888999999999999
Q ss_pred ceEEEEecCCC-----CEEE-EEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeeeeeecccc------------
Q 002086 627 RLVVDWTDLHE-----MVTA-ACYTPDGQNALIGS------HKGSCRLYSIEDSKLHQLNQVDFQTKK------------ 682 (969)
Q Consensus 627 ~~~~~~~~~~~-----~V~s-v~fspdg~~Lasgs------~dg~I~IwDl~~~~~~~~~~~~~~~~~------------ 682 (969)
++++-...... .+.+ ..+ .+ ..+++++ .+|.|+-+|..+++..-..........
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 98875443322 1211 111 13 3566655 379999999999987644332110000
Q ss_pred -----------------cCCCCCe-EEEEEcCCCCceEEEEeCC----------------CcEEEEeCCcceEEEEeecC
Q 002086 683 -----------------KSSTRKI-TGFQFSPSNPSEVLVTSAD----------------SRIRILDGLDIVHKFRGFRN 728 (969)
Q Consensus 683 -----------------~~h~~~I-t~l~fspd~~~~l~sgs~D----------------g~I~IwD~~~~~~~~~~~~~ 728 (969)
......+ ..+++.+.. ..++.+..+ +.|..+|..+..........
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0000001 134555655 466666554 37888887765554443221
Q ss_pred CC---------CeEEEEEe-CCC---CEEEEEeCCCcEEEEEcCCCCcc
Q 002086 729 TS---------SQISAAFN-ADG---KYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 729 ~~---------~V~sl~fs-pdg---~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
.. ...-+... .+| ..|+.++.+|.|+++|..+++.+
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 11 11112332 577 57888999999999999985443
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.44 E-value=0.0053 Score=75.07 Aligned_cols=197 Identities=10% Similarity=0.003 Sum_probs=117.4
Q ss_pred CCEEEEEecC-CcEEEEE-eCCCcEEEEECCC----CcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 555 DDVLDLSWSR-SHLLLSS-SMDKTVRLWDMET----KSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t----~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
..+.+|+|.+ ++.|+.+ ...+.|+.+++.. ......+. .......|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4566788887 5555544 4568899999875 22222221 22345678887635556666566788999999876
Q ss_pred eEEEEecC-CCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 628 LVVDWTDL-HEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 628 ~~~~~~~~-~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
....+... ......|++.|.+.+|+.... .+.|.++++......... .........|+|+|++..++++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~--------~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES--------CSSCSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE--------eCCCCCccEEEEeccCCEEEEE
Confidence 65554432 245678899997665555432 367888877653321110 1123456789999987666676
Q ss_pred EeCCCcEEEEeCCcc-eEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 705 TSADSRIRILDGLDI-VHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~-~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
-...+.|..++.... ...+.. .........|++..+ .++++....+.|..++..+
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 677888999986432 222211 111122334555544 4455555667888888765
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.27 E-value=0.44 Score=57.18 Aligned_cols=201 Identities=6% Similarity=-0.009 Sum_probs=121.4
Q ss_pred CCCCEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcE-EEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 553 HLDDVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSC-LKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~-i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
......+|+|++ ++.|+.+ ...+.|..+++..... ...+. .-.....|++.+..++++++-...+.|.+.++....
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 445678899987 5555544 4567899999876532 22332 225789999998445555666667899999998765
Q ss_pred EEEEe-cCCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 629 VVDWT-DLHEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 629 ~~~~~-~~~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
...+. ..-.....|++.|.+.+|+.... .+.|...++......... ........+|++++++..++++-
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~--------~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII--------NSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSSCSSEEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE--------eCCCCCCcEEEEEccCCEEEEEe
Confidence 44443 33455788999997666665553 467777777654332211 12345678999999875666666
Q ss_pred eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 706 SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 706 s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...+.|..++...................+++..+ .++++-...+.|...|..+++
T Consensus 190 ~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 190 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp TTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 67788999886432221111101112235666655 444444456789888887654
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.21 E-value=1.4 Score=48.62 Aligned_cols=190 Identities=9% Similarity=-0.036 Sum_probs=94.3
Q ss_pred CCEEEEEecCC----cEEEEEeC-C-----CcEEEEECCCCcE-----E-EEeec----CCCeEEEEEecCCCCEEEEEE
Q 002086 555 DDVLDLSWSRS----HLLLSSSM-D-----KTVRLWDMETKSC-----L-KLFAH----NDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 555 ~~I~~l~fs~~----~~L~Sgs~-D-----gtV~IWDl~t~~~-----i-~~~~h----~~~V~sv~fsp~~~~~L~sgs 614 (969)
.....|+|+|+ ..|+.+.. . ..|..|+...+.. + ..+.. ......|+|.| ++.++++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 45678888885 45544433 2 6688888765421 1 11221 12346899999 887666643
Q ss_pred C-------------CCeEEEEeCCCc-------------e-EEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcE------
Q 002086 615 L-------------DAKVRIWSISDR-------------L-VVDWTDLHEMVTAACYTP-DGQNALIGSHKGSC------ 660 (969)
Q Consensus 615 ~-------------Dg~I~IWDl~~~-------------~-~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I------ 660 (969)
. .|.|.-++.... . .+...++ .....++|+| ++.++++-...+.+
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d 232 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHD 232 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCC
T ss_pred CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence 2 256666665431 1 1111222 3367789999 66655553333321
Q ss_pred EEEEcCCCceeee---------e-eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce------EEEE
Q 002086 661 RLYSIEDSKLHQL---------N-QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV------HKFR 724 (969)
Q Consensus 661 ~IwDl~~~~~~~~---------~-~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~------~~~~ 724 (969)
.|.-+..+...-. . ....... ..+......++|. ++ .++++....+.|...+..... ....
T Consensus 233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~-~~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~ 309 (352)
T 2ism_A 233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF-WPQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVET 309 (352)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEE-CTTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEeccCCcCCCCcccCCCCCCCCcCCeEe-cCCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence 2222222220000 0 0000000 1122345677773 34 455555556677776643211 0111
Q ss_pred eecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 725 GFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 725 ~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
.......+..+++.|||.++++...
T Consensus 310 ~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 310 ALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EEESSCCEEEEEECTTSCEEEEECS
T ss_pred ecccCCCeeEEEECCCCcEEEEEeC
Confidence 1123456889999999987776543
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.15 E-value=0.3 Score=56.73 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=95.7
Q ss_pred CEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEeec----CCCeEEEEE-------ecCCCCEEEEEECCC----
Q 002086 556 DVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLFAH----NDYVTCIQF-------NPMDDDYFISGSLDA---- 617 (969)
Q Consensus 556 ~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h----~~~V~sv~f-------sp~~~~~L~sgs~Dg---- 617 (969)
....|+|.| ++++++-...+.|++.|+.++.......- ......|+| ++ ++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467889987 23444444457799999998887776632 235899999 98 788666665554
Q ss_pred ---eEEEEeCCC-ceEE-----EEecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcC-------CCcee-e-------
Q 002086 618 ---KVRIWSISD-RLVV-----DWTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIE-------DSKLH-Q------- 672 (969)
Q Consensus 618 ---~I~IWDl~~-~~~~-----~~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~-------~~~~~-~------- 672 (969)
.|.+++... +... ...........++++|+ +.++++-..++.|..+|+. ++... .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266775443 1211 11111123457788995 4555566678889999997 45430 0
Q ss_pred -eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 673 -LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 673 -~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
...+ + ..........|+|+|++..++++-+..+.|+.++
T Consensus 299 ~~~~l-~---~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 299 TFKQL-F---TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TEEEE-E---ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cccee-E---ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 0000 0 0122345689999999843555557778899866
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.03 E-value=0.021 Score=69.70 Aligned_cols=178 Identities=7% Similarity=-0.084 Sum_probs=104.8
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEE-ECCCeEEEEeCCC----ceEEEEec-CCCCEEEEEEccC
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISG-SLDAKVRIWSISD----RLVVDWTD-LHEMVTAACYTPD 647 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sg-s~Dg~I~IWDl~~----~~~~~~~~-~~~~V~sv~fspd 647 (969)
.+.|+..++.+.+...++.....+..|+|++ ....|+.+ ...+.|+.+++.+ .....+.. .......|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3577888888777666555556678899998 55555444 4567899999875 22222221 1223556888865
Q ss_pred CC-EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCcceEEEEe
Q 002086 648 GQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLDIVHKFRG 725 (969)
Q Consensus 648 g~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~~~~~~~~ 725 (969)
+. ++++-...+.|.++++......... .........|++.|.+..++++-... +.|+++++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~--------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLF--------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEEC--------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEE--------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 44 4444456788999998765432221 11223456788998764444444333 67888775432221111
Q ss_pred ecCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCC
Q 002086 726 FRNTSSQISAAFNADGKYI-ISASEDSQVYVWKREE 760 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~L-aSgs~Dg~I~IWdl~t 760 (969)
.........|+|+|++..| ++-...+.|.+++++.
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 1122335679999876544 4545567899999864
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.01 E-value=2.5 Score=46.65 Aligned_cols=189 Identities=14% Similarity=0.033 Sum_probs=96.5
Q ss_pred CCEEEEEecCC----cEEEEEeC----C----CcEEEEECCCC--c-----EE-EEee--cCCCeEEEEEecCCCCEEEE
Q 002086 555 DDVLDLSWSRS----HLLLSSSM----D----KTVRLWDMETK--S-----CL-KLFA--HNDYVTCIQFNPMDDDYFIS 612 (969)
Q Consensus 555 ~~I~~l~fs~~----~~L~Sgs~----D----gtV~IWDl~t~--~-----~i-~~~~--h~~~V~sv~fsp~~~~~L~s 612 (969)
.....|+++|+ ..|+.+.. + ..|..|+.... . .+ ..+. .......|+|.| ++.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence 34677888874 45554433 2 56777776654 1 11 1121 122356799999 8887776
Q ss_pred EEC-------------CCeEEEEeCCCc---------eEEEEecCCCCEEEEEEcc-CCCEEEEEeCCC---cEEEEEcC
Q 002086 613 GSL-------------DAKVRIWSISDR---------LVVDWTDLHEMVTAACYTP-DGQNALIGSHKG---SCRLYSIE 666 (969)
Q Consensus 613 gs~-------------Dg~I~IWDl~~~---------~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg---~I~IwDl~ 666 (969)
.+. .|.|.-++.... ..+...++ .....++|+| +|.++++-...+ .|.+. .
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~ 228 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNII--L 228 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--C
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--c
Confidence 442 245666665432 11222223 3356799999 666555432221 23332 2
Q ss_pred CCceee---------ee-eeeecccccCCCCCeEEEEEc-------CCCCceEEEEeCCCcEEEEeCCcc--eE-EEEee
Q 002086 667 DSKLHQ---------LN-QVDFQTKKKSSTRKITGFQFS-------PSNPSEVLVTSADSRIRILDGLDI--VH-KFRGF 726 (969)
Q Consensus 667 ~~~~~~---------~~-~~~~~~~~~~h~~~It~l~fs-------pd~~~~l~sgs~Dg~I~IwD~~~~--~~-~~~~~ 726 (969)
.+...- .. .................++|. .++ .++++.-..+.|...+.... .. .....
T Consensus 229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 307 (354)
T 3a9g_A 229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFF 307 (354)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEEC
T ss_pred CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeec
Confidence 221000 00 000000000123467888884 334 55555566677888775532 11 11222
Q ss_pred c-CCCCeEEEEEeCCCCEEEEEe
Q 002086 727 R-NTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 727 ~-~~~~V~sl~fspdg~~LaSgs 748 (969)
. ....+..+++.|||.++++..
T Consensus 308 ~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 308 KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCeeEEEECCCCcEEEEEe
Confidence 1 245688999999998777664
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.89 E-value=2.1 Score=51.21 Aligned_cols=197 Identities=9% Similarity=-0.010 Sum_probs=121.3
Q ss_pred CCEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcEEEEee-------cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 002086 555 DDVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~ 625 (969)
..+.+|+|.+ ++.|+.+ ...+.|+.+++........+. ....+..|++....++++++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 4578899987 5555444 456788888887554333332 234688999998445566677778899999987
Q ss_pred CceEEEEe-cCCCCEEEEEEcc-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 626 DRLVVDWT-DLHEMVTAACYTP-DGQNALIGSHKG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 626 ~~~~~~~~-~~~~~V~sv~fsp-dg~~Lasgs~dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
......+. ........|++.| .|.++++-.... .|...++......... .........|++.+.+..+
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~--------~~~l~~P~gla~D~~~~~L 491 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF--------FSGLSKPIALALDSRLGKL 491 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE--------CSSCSCEEEEEEETTTTEE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE--------eccCCCccEEEEeCCCCEE
Confidence 65433333 2346789999999 455445533332 5777777654332211 2234567899999987455
Q ss_pred EEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 702 VLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+++-+..+.|...+.... ...+. .........+++.. +.++.+=.....|...|..++
T Consensus 492 Yw~D~~~~~I~~~~~dG~~r~~~~-~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G 550 (628)
T 4a0p_A 492 FWADSDLRRIESSDLSGANRIVLE-DSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGR 550 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEE-CSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSS
T ss_pred EEEeCCCCEEEEEeCCCCceEEEE-cCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCC
Confidence 555566788999986432 22222 12233456677654 444555555667777777653
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.81 E-value=2.7 Score=46.25 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=39.4
Q ss_pred CCeEEEEEcCC------CCceEEEEeCCCcEEEEeCCcc--eEEEEee-cCCCCeEEEEEeCCCCEEEEEe-CCCcEEEE
Q 002086 687 RKITGFQFSPS------NPSEVLVTSADSRIRILDGLDI--VHKFRGF-RNTSSQISAAFNADGKYIISAS-EDSQVYVW 756 (969)
Q Consensus 687 ~~It~l~fspd------~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~-~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IW 756 (969)
..+..+.|... ...++++....+.|...+.... ....... .....+..+++.|||.++++.. .+| +||
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEE
Confidence 35677888642 1255665566677777664432 1111112 1234688999999998766543 344 344
Q ss_pred Ec
Q 002086 757 KR 758 (969)
Q Consensus 757 dl 758 (969)
.+
T Consensus 349 ri 350 (353)
T 2g8s_A 349 KV 350 (353)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.68 E-value=3.2 Score=45.27 Aligned_cols=203 Identities=13% Similarity=0.141 Sum_probs=127.0
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEee-c----CCCeEEEEEecCCCCEEEEEEC-------CCeEEEE
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMET-KSCLKLFA-H----NDYVTCIQFNPMDDDYFISGSL-------DAKVRIW 622 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t-~~~i~~~~-h----~~~V~sv~fsp~~~~~L~sgs~-------Dg~I~IW 622 (969)
.|.-=.|-..+.|+-.+ +..|+-|++.. ..+.+.|. | ...|..-..++ +.+.++..+- .|.+.+|
T Consensus 108 ~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLY 185 (365)
T 2xzh_A 108 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 185 (365)
T ss_dssp CEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEE
Confidence 44455565545444444 35799999974 45666663 2 35677777777 6665554332 3778999
Q ss_pred eCCCceEEEEecCCCCEEEEEEccC---CCEEEEEeC---CCcEEEEEcCCC----ceeeeeeeeecccccCCCCCeEEE
Q 002086 623 SISDRLVVDWTDLHEMVTAACYTPD---GQNALIGSH---KGSCRLYSIEDS----KLHQLNQVDFQTKKKSSTRKITGF 692 (969)
Q Consensus 623 Dl~~~~~~~~~~~~~~V~sv~fspd---g~~Lasgs~---dg~I~IwDl~~~----~~~~~~~~~~~~~~~~h~~~It~l 692 (969)
..+.+....+.+|...-..+.+..+ ...|+.+.. .+.++|.++... ........++............++
T Consensus 186 S~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVam 265 (365)
T 2xzh_A 186 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 265 (365)
T ss_dssp ETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEE
T ss_pred eecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEE
Confidence 9988776666665443322222111 113333332 258999998443 112222233333334456667788
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..++.. ..++.-+.-|.|++||+.+..+.+...-....|...+-.....=++.-...|.|.--.+++.
T Consensus 266 qvs~ky-gviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 266 QISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EecccC-CEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 888766 68888999999999999999988888777777776666555555666668888887777764
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.47 E-value=3 Score=46.08 Aligned_cols=191 Identities=11% Similarity=0.134 Sum_probs=109.6
Q ss_pred CEEEEEecCCcEEEEEe-------------CCCcEEEEECCC--CcEEE--Eee-----cCCCeEEEEEecC-CCC-EEE
Q 002086 556 DVLDLSWSRSHLLLSSS-------------MDKTVRLWDMET--KSCLK--LFA-----HNDYVTCIQFNPM-DDD-YFI 611 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs-------------~DgtV~IWDl~t--~~~i~--~~~-----h~~~V~sv~fsp~-~~~-~L~ 611 (969)
..-++...++..+++++ .+|.|.++|..+ .+... ..+ .......|.+.+. ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34456666755556655 799999999984 33222 112 1236778887662 232 444
Q ss_pred EEE-C--CCeEEEEeCCC--ceEE--EEecC--CCCEEEEEEccCCCEEEEEeC-----------------CCcEEEEEc
Q 002086 612 SGS-L--DAKVRIWSISD--RLVV--DWTDL--HEMVTAACYTPDGQNALIGSH-----------------KGSCRLYSI 665 (969)
Q Consensus 612 sgs-~--Dg~I~IWDl~~--~~~~--~~~~~--~~~V~sv~fspdg~~Lasgs~-----------------dg~I~IwDl 665 (969)
++. . +.+|.+|++.. +... ....+ -...+.+.+.++|.++++... .|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 442 2 46677877654 3222 22222 256889999999987776541 234444544
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeC-CCC
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNA-DGK 742 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fsp-dg~ 742 (969)
++.... .......+.++|+|++..++++-+..+.|+.|+... .......+......-.+++.+ +|.
T Consensus 211 --~~~~~~---------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 211 --NDVRVV---------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 279 (355)
T ss_dssp --TCCEEE---------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred --CeEEEe---------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCc
Confidence 322111 112345789999999855666667788999998542 111111222244566788999 598
Q ss_pred EEEEEeCC-CcEEEEE
Q 002086 743 YIISASED-SQVYVWK 757 (969)
Q Consensus 743 ~LaSgs~D-g~I~IWd 757 (969)
+.+++..+ +.|..|+
T Consensus 280 lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEEEEESCHHHHHSCC
T ss_pred EEEEecCCceEEEEEC
Confidence 88877644 3444443
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.45 E-value=0.58 Score=52.78 Aligned_cols=149 Identities=11% Similarity=0.179 Sum_probs=91.6
Q ss_pred CCCEEEEEECCCeEEEEeCCCce---EEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--------
Q 002086 606 DDDYFISGSLDAKVRIWSISDRL---VVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ-------- 672 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~-------- 672 (969)
++..++.+- ++.||.-++..+. .+.... ....|..+..+|+|.+||..+ +..|.|..+..+....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444443 4667777766332 222221 123578899999999999886 5588998887432111
Q ss_pred --eeeeeecccccCCCCCeEEEEEcCCCC--ceEEEEeCCCcEEEEeCCc----ce------EEEEeecCCCCeEEEEEe
Q 002086 673 --LNQVDFQTKKKSSTRKITGFQFSPSNP--SEVLVTSADSRIRILDGLD----IV------HKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 673 --~~~~~~~~~~~~h~~~It~l~fspd~~--~~l~sgs~Dg~I~IwD~~~----~~------~~~~~~~~~~~V~sl~fs 738 (969)
...+.+.........+|..+.|+|-+. ..|++-..|+.|++||+.. .. ..+........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 111222111122467899999999653 4899999999999999653 11 111111122568899999
Q ss_pred CCCCEEEEEe--CCCcEEEE
Q 002086 739 ADGKYIISAS--EDSQVYVW 756 (969)
Q Consensus 739 pdg~~LaSgs--~Dg~I~IW 756 (969)
.++-.|...+ +.|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887666655 77887753
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.45 E-value=4.6 Score=48.25 Aligned_cols=196 Identities=6% Similarity=0.003 Sum_probs=118.2
Q ss_pred CCEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
..+.+|+|.+ ++.|+ +-...+.|+.+++........+. .-.....|++.+..++++++-...+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 4577899987 45544 44467889999987654444442 235678899987455666666677899999988764433
Q ss_pred Eec-CCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 632 WTD-LHEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 632 ~~~-~~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+.. .-.....|++.|...+|..... ...|...++......... .........|++++.+..++++-+..
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~--------~~~l~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV--------NTSLGWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE--------eCCCCCCeeeEEcccCCEEEEEECCC
Confidence 332 3366899999997555554442 367777777654322111 22345678999998774555555667
Q ss_pred CcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 709 SRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 g~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+.|..++.... ...+.. ........+++..+ .+.++-...+.|...+..+
T Consensus 501 ~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~ 551 (619)
T 3s94_A 501 DKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRS 551 (619)
T ss_dssp TEEEEEESSSCCCEEEEE-CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSS
T ss_pred CEEEEEecCCCceEEEec-cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCC
Confidence 78988885432 222211 11112234555433 3333333455677666665
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.24 E-value=0.89 Score=50.44 Aligned_cols=139 Identities=11% Similarity=0.093 Sum_probs=82.9
Q ss_pred CCCeEEEEeCCC--ceEE--EEecC-----CCCEEEEEEcc--CCC-EEEEE-eC--CCcEEEEEcCCCceeeeeeeeec
Q 002086 615 LDAKVRIWSISD--RLVV--DWTDL-----HEMVTAACYTP--DGQ-NALIG-SH--KGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 615 ~Dg~I~IWDl~~--~~~~--~~~~~-----~~~V~sv~fsp--dg~-~Lasg-s~--dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
.+|.|.++|+.+ .+.. ...+. .-....+.+.+ ++. +|+++ .. +.+|.+|++............+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999973 3332 23321 13567777766 454 34443 33 46788887765422111111111
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEe-----------------CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTS-----------------ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs-----------------~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
.......+.+.+.+++ .++++.. ..+.|+.+|..+....... -..-+.++|+||++
T Consensus 161 ---g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~---l~~pNGia~spDg~ 233 (355)
T 3sre_A 161 ---HKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEG---FDFANGINISPDGK 233 (355)
T ss_dssp ---CTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEE---ESSEEEEEECTTSS
T ss_pred ---cCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecC---CcccCcceECCCCC
Confidence 2234578899999987 5555543 1356777776543332222 23457899999998
Q ss_pred EEEEEe-CCCcEEEEEcCC
Q 002086 743 YIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 743 ~LaSgs-~Dg~I~IWdl~t 760 (969)
+|+.+. ..+.|+.|++..
T Consensus 234 ~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEEGGGTEEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEECC
Confidence 877665 467899999974
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.14 E-value=0.19 Score=51.76 Aligned_cols=182 Identities=9% Similarity=0.006 Sum_probs=102.9
Q ss_pred cEEEEEeCCCcEEEEECCCCc------EEEEeec--CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC
Q 002086 566 HLLLSSSMDKTVRLWDMETKS------CLKLFAH--NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE 637 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~------~i~~~~h--~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~ 637 (969)
.+|++...| +|+.=-...+. ....++. =..+..++|+| ++.+.++ .+|.++-.+..+.....+.....
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 456666666 66655555444 2344444 35788999999 8886666 67888777765532222222222
Q ss_pred C--------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 638 M--------VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 638 ~--------V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
. -.++.|.|+|.+.++ .||.|+-++-.+........ .-.......-..+..|.|.|++ .|.+.. |+
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~-~a~~vg~~gw~~~~~lff~p~G--~Lyav~-dg 154 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIA-RATEVGSGGWSGFKFLFFHPNG--YLYAVH-GQ 154 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH-HSEEEECSSGGGEEEEEECTTS--CEEEEE-TT
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceec-cccEeccCCCCceEEEEECCCc--eEEEEe-CC
Confidence 2 378999999988888 56988877653321110000 0000001223567999999998 444444 88
Q ss_pred cEEEEeCC-cc------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 710 RIRILDGL-DI------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 710 ~I~IwD~~-~~------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.++-+..- .. .....+........-+.|+++|.+.+.. +| +||....+
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence 76543311 00 1122222233334457799999877766 66 55665554
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.01 E-value=3.5 Score=53.01 Aligned_cols=180 Identities=6% Similarity=0.068 Sum_probs=109.4
Q ss_pred CcEEEEEe----------CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSS----------MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
..+|+.|. ..|.|.++++..++..... ...++|++++-- .+ +|++|- ..+|++|++...+.+..
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~vy~l~~~~~L~~ 919 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRLYEWTTEKELRT 919 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEEEEECTTSCEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEEEECCCCceEEE
Confidence 47888886 3578999999755433332 567899999865 35 555443 57899999987643331
Q ss_pred -ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc--CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 633 -TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSI--EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 633 -~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl--~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
......|..+.....++++++|..-..|.++.. ..+++.... .......++++.|-.++ .++.+..+|
T Consensus 920 ~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-------~D~~~~~vta~~~ld~~--t~l~aD~~g 990 (1158)
T 3ei3_A 920 ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-------RDFNPNWMSAVEILDDD--NFLGAENAF 990 (1158)
T ss_dssp EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-------ECCSCBCEEEEEEEETT--EEEEEETTS
T ss_pred EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-------eecccccEEEEEEEccC--cEEEEcCCC
Confidence 111112333344446789999998877777544 333332211 14456778999887654 788899999
Q ss_pred cEEEEeCCc---------ceEEEEeecCCCCeEEEE---EeCC---------CCEEEEEeCCCcEEEEE
Q 002086 710 RIRILDGLD---------IVHKFRGFRNTSSQISAA---FNAD---------GKYIISASEDSQVYVWK 757 (969)
Q Consensus 710 ~I~IwD~~~---------~~~~~~~~~~~~~V~sl~---fspd---------g~~LaSgs~Dg~I~IWd 757 (969)
.|.++.... .......+.....|+++. +.+. ...++-++.+|.|.+.-
T Consensus 991 Nl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 991 NLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred cEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 999886211 111222222344566654 2222 23467777788877654
No 310
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.72 E-value=6.3 Score=43.35 Aligned_cols=243 Identities=11% Similarity=0.032 Sum_probs=124.8
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+-..-..-+.|+|.|||++|++--..|.|++++..+++........
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~---------------------------------- 72 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP---------------------------------- 72 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT----------------------------------
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC----------------------------------
Confidence 4444567789999999998887765899998876554432110000
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC----CcEEEEE---eCCCcEEEEECCCC----------cEEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR----SHLLLSS---SMDKTVRLWDMETK----------SCLK 589 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~----~~~L~Sg---s~DgtV~IWDl~t~----------~~i~ 589 (969)
..+.........|+++| +..|+.. ..++.|.-|.+..+ +.+.
T Consensus 73 ---------------------~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~ 131 (347)
T 3das_A 73 ---------------------GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVF 131 (347)
T ss_dssp ---------------------TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEE
T ss_pred ---------------------ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEE
Confidence 00112345678889987 2444432 23455666655441 1111
Q ss_pred -Ee--ecCCCeEEEEEecCCCCEEEEEEC-------------CCeEEEEeCCCc---------eEEEEecCCCCEEEEEE
Q 002086 590 -LF--AHNDYVTCIQFNPMDDDYFISGSL-------------DAKVRIWSISDR---------LVVDWTDLHEMVTAACY 644 (969)
Q Consensus 590 -~~--~h~~~V~sv~fsp~~~~~L~sgs~-------------Dg~I~IWDl~~~---------~~~~~~~~~~~V~sv~f 644 (969)
.+ ........|+|.| ++.++++.+. .|.|.-.+.... ..+...++ .....++|
T Consensus 132 ~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~ 209 (347)
T 3das_A 132 RGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAW 209 (347)
T ss_dssp EEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEE
T ss_pred EcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEE
Confidence 12 1223456799999 8887777543 355555555432 11222333 34567999
Q ss_pred ccCCCEEEEE-eCCCcEEEEEcCCCceeeeee---------e-eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 645 TPDGQNALIG-SHKGSCRLYSIEDSKLHQLNQ---------V-DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 645 spdg~~Lasg-s~dg~I~IwDl~~~~~~~~~~---------~-~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
+|+|.++++= +.++.-.|.-+..+...-... + ........+......++|.. + .+++..-..+.|..
T Consensus 210 dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~ 287 (347)
T 3das_A 210 DDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWR 287 (347)
T ss_dssp CTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEE
T ss_pred CCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEE
Confidence 9988766553 233333333333322100000 0 00000011113556777764 3 45555555556655
Q ss_pred EeCCcce----EEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 714 LDGLDIV----HKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 714 wD~~~~~----~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
..+.... ...........+..+...|||.++++..
T Consensus 288 v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 288 IPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred EEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5532211 0111112345688899999997666644
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.65 E-value=0.97 Score=48.10 Aligned_cols=184 Identities=11% Similarity=0.089 Sum_probs=98.9
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCc---EEEEe--ecCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCce
Q 002086 564 RSHLLLSSSMD-----KTVRLWDMETKS---CLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDRL 628 (969)
Q Consensus 564 ~~~~L~Sgs~D-----gtV~IWDl~t~~---~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~ 628 (969)
.+.+++.|+.+ ..+.+||..+.+ -...- .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 35677777754 468999998876 43332 111111222222 56677777654 358899998876
Q ss_pred EEEEecCC---CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 629 VVDWTDLH---EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 629 ~~~~~~~~---~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
-....... ....++.+ +++.++.|+.+ ..+.+||+.+.+........ ........+.+ ++ .
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~ 208 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA------TKRSGAGVALL--ND-H 208 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-E
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC------cccccceEEEE--CC-E
Confidence 44332222 11122222 66777777654 46889999887654432211 11111222333 23 6
Q ss_pred eEEEEeCC-----CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 701 EVLVTSAD-----SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 701 ~l~sgs~D-----g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
+++.|+.+ ..+.+||..+..-... .......-.+++ .-++++++.|+.+ ..|.+||+.+.
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 77777664 4688999764332211 111111111222 2267788888765 35788888763
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.58 E-value=1.2 Score=47.37 Aligned_cols=185 Identities=9% Similarity=0.118 Sum_probs=98.8
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCceEEE
Q 002086 564 RSHLLLSSSMD-----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDRLVVD 631 (969)
Q Consensus 564 ~~~~L~Sgs~D-----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~~~~~ 631 (969)
.+.+++.|+.+ ..+.+||..+.+-...- .....-.+++.. ++.+++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 45667777654 35889999887655443 111111222222 567777777653 58889998876544
Q ss_pred EecCCCC--EEEEEEccCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 632 WTDLHEM--VTAACYTPDGQNALIGSHK-------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 632 ~~~~~~~--V~sv~fspdg~~Lasgs~d-------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
......+ -.+++. -+++.++.|+.+ ..+.+||+.+.+........ ........+.+ ++ .++
T Consensus 139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~iy 208 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS------TRRSGAGVGVL--NN-LLY 208 (302)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-EEE
T ss_pred cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc------cccccccEEEE--CC-EEE
Confidence 4322211 112222 256667776542 45889999887654432211 11111222223 23 677
Q ss_pred EEEeCC-----CcEEEEeCCcceEE-EEeecCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCC
Q 002086 703 LVTSAD-----SRIRILDGLDIVHK-FRGFRNTSSQISAAFNADGKYIISASEDS-----QVYVWKREEH 761 (969)
Q Consensus 703 ~sgs~D-----g~I~IwD~~~~~~~-~~~~~~~~~V~sl~fspdg~~LaSgs~Dg-----~I~IWdl~t~ 761 (969)
+.|+.+ ..+.+||..+..-. +........-..++ .-++++++.|+.++ .|.+||+.+.
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 777654 35888996643222 11111111111222 23677888887654 4888998863
No 313
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.50 E-value=12 Score=45.50 Aligned_cols=192 Identities=11% Similarity=0.155 Sum_probs=113.8
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~ 633 (969)
..|.++....+..|..|+.+| +..||..+.+..... .....|.++... ++ .|..++.+ -|..||..+++...+.
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 457777766667777887765 789998876543211 122357777543 34 55556665 6888998877665541
Q ss_pred c-----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 634 D-----LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 634 ~-----~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
. ....|.++....+|.+.+ |+.. -+..|+..+.+..... ...........|.++....++ ..|.+|+.
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~---~~~~~~~~~~~i~~i~~d~~~-~~lWigt~- 210 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIP---LPVHSSQSNLFVNSLLEDTTR-QCVWIGTE- 210 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEEC---CCCCTTCSSCCEEEEEEETTT-TEEEEEEE-
T ss_pred cCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEec---CCCccccccceeEEEEEECCC-CEEEEEEC-
Confidence 1 235688888888877555 5544 5778888776543211 110001123358888877655 44555553
Q ss_pred CcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 709 SRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 709 g~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+.|..++..... ..+... ....|.++....+|.+.+. +. +-|.+++..+.
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTT 261 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTS
T ss_pred CCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCC
Confidence 468888865432 222211 1234778888878776554 44 45788877653
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.44 E-value=8.4 Score=43.59 Aligned_cols=198 Identities=13% Similarity=0.140 Sum_probs=127.1
Q ss_pred EecCCcEEEEEeCCCcEEEEECCC-CcEEEEee-c----CCCeEEEEEecCCCCEEEEEE-------CCCeEEEEeCCCc
Q 002086 561 SWSRSHLLLSSSMDKTVRLWDMET-KSCLKLFA-H----NDYVTCIQFNPMDDDYFISGS-------LDAKVRIWSISDR 627 (969)
Q Consensus 561 ~fs~~~~L~Sgs~DgtV~IWDl~t-~~~i~~~~-h----~~~V~sv~fsp~~~~~L~sgs-------~Dg~I~IWDl~~~ 627 (969)
.|-..+.|+-.+ +..|+-|++.. ..+.+.|. | ...|..-..++ +.++++..+ ..|.+.+|..+.+
T Consensus 112 kWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 112 KWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp EEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred EecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc
Confidence 343334443333 45799999864 35666663 2 35677777777 666655433 2477899999887
Q ss_pred eEEEEecCCCCEEEEEEccCC---CEEEEEeC---CCcEEEEEcCCC----ceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 628 LVVDWTDLHEMVTAACYTPDG---QNALIGSH---KGSCRLYSIEDS----KLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fspdg---~~Lasgs~---dg~I~IwDl~~~----~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
....+.+|...-..+.+..+. ..++.+.. .+.++|.++... ........++............++..++.
T Consensus 190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k 269 (494)
T 1bpo_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (494)
T ss_dssp CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence 766666665443333332111 23333443 278999998543 11222223333333445666778888887
Q ss_pred CCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 698 NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
. ..++.-+.-|.|++||+.+....+...-....|...+-.....=++.-...|.|.--.+++.
T Consensus 270 y-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 270 H-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp T-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred C-CEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 6 68888999999999999999998888777777776666666566777778888888888764
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.36 E-value=8.8 Score=43.44 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=111.4
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecC-----CCCEEEEEEcc
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDL-----HEMVTAACYTP 646 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~-----~~~V~sv~fsp 646 (969)
...++.|+|+++.+.++.+.....|.-=.|-. .+.|+-.+ +..|+-|++... .+++.+.. ...|..-..++
T Consensus 84 ag~~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~ 160 (494)
T 1bpo_A 84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA 160 (494)
T ss_dssp ETTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred cCCeEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC
Confidence 37899999999999999998888887777764 56655554 567999999642 34444433 24577788889
Q ss_pred CCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC--CCceEEEEeC---CCcEEEE
Q 002086 647 DGQNALIGS-------HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS--NPSEVLVTSA---DSRIRIL 714 (969)
Q Consensus 647 dg~~Lasgs-------~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd--~~~~l~sgs~---Dg~I~Iw 714 (969)
+.++++..+ -.|.+.+|..+....... .+|......+.+.-. ...+++.+.. .+.+.|.
T Consensus 161 ~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~ 231 (494)
T 1bpo_A 161 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231 (494)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE---------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEE
T ss_pred CCCeEEEEeecccCCcccceEEEeeccccccchh---------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence 999887533 246788998877654322 233322222222110 0012222222 2678888
Q ss_pred eCCcc--------eEEEEeec----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 715 DGLDI--------VHKFRGFR----NTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 715 D~~~~--------~~~~~~~~----~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++... ......+- ...--.++..++.-..+..-+.-|.|++||++++
T Consensus 232 Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp ECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred EcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence 75321 11111111 1223457888888888999999999999999994
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.35 E-value=1.2 Score=47.45 Aligned_cols=185 Identities=9% Similarity=0.060 Sum_probs=98.8
Q ss_pred CCcEEEEEeCC----CcEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEEE
Q 002086 564 RSHLLLSSSMD----KTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVVD 631 (969)
Q Consensus 564 ~~~~L~Sgs~D----gtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~~ 631 (969)
.+.+++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 45677777754 678899999886554431 11111122222 56677777765 458999998876544
Q ss_pred EecCCCC--EEEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 632 WTDLHEM--VTAACYTPDGQNALIGSH---------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 632 ~~~~~~~--V~sv~fspdg~~Lasgs~---------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
......+ -.+++. -+++.++.|+. -..+.+||+.+.+........ .....-..+.+ ++ .
T Consensus 133 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~ 202 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI------EARKNHGLVFV--KD-K 202 (306)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-E
T ss_pred CCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc------chhhcceEEEE--CC-E
Confidence 3222211 112222 25666677653 345889999888654432211 11111222222 33 5
Q ss_pred eEEEEeCC-----CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 701 EVLVTSAD-----SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 701 ~l~sgs~D-----g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
+++.|+.+ ..+.+||..+..-... .......-.+++.. ++++++.|+.+ ..|.+||+.+.
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 77776643 3578888654322111 11111111122222 67788888854 45888888773
No 317
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.26 E-value=9.6 Score=43.51 Aligned_cols=34 Identities=6% Similarity=-0.029 Sum_probs=24.6
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~ 484 (969)
-..-++|+|.|||+++++--..+.|++++..+++
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 4467899999999988876544568887755443
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.97 E-value=3.9 Score=44.94 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe------ecCCCeEEEEEecCC---CCEEEEEEC-C-----C
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF------AHNDYVTCIQFNPMD---DDYFISGSL-D-----A 617 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~------~h~~~V~sv~fsp~~---~~~L~sgs~-D-----g 617 (969)
.-..-..++|.++..|+.+..+|.|++++ .++..... ........|+|+| + +..|+++.. . +
T Consensus 29 ~l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CCSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCcc
Confidence 34456799999944466667789999999 44422211 1245789999999 5 444444433 2 6
Q ss_pred eEEEEeCCCce------EEEEec----CCCCEEEEEEccCCCEEEEE
Q 002086 618 KVRIWSISDRL------VVDWTD----LHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 618 ~I~IWDl~~~~------~~~~~~----~~~~V~sv~fspdg~~Lasg 654 (969)
.|..|+...+. ++.... .......++|.|+|.++++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 78888877531 222122 11234689999999766653
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.79 E-value=9.3 Score=41.65 Aligned_cols=189 Identities=14% Similarity=0.194 Sum_probs=115.7
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEEecCC-----CCEEEEEEcc
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDWTDLH-----EMVTAACYTP 646 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~-----~~V~sv~fsp 646 (969)
...++.|+|+++.+.++.+.....|.-=.|- +.+.|+-.+ +..|+.|++.. ..+.+.+..+ ..|..-..++
T Consensus 85 ag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~ 161 (365)
T 2xzh_A 85 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA 161 (365)
T ss_dssp ETTEEEEEETTTTEEEEEEECSSCEEEEEEC--SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred cCCeEEEechHHhhhhcceecCCccEEEEec--CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECC
Confidence 3688999999999999999888888877886 466666555 46799999975 3444444332 4577778888
Q ss_pred CCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC--CCCceEEEEeC---CCcEEEE
Q 002086 647 DGQNALIGS-------HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP--SNPSEVLVTSA---DSRIRIL 714 (969)
Q Consensus 647 dg~~Lasgs-------~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp--d~~~~l~sgs~---Dg~I~Iw 714 (969)
+.++++..+ -.|.+.+|..+....... .+|......+.+.- ....+++.+.. .+.+.|.
T Consensus 162 ~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIi 232 (365)
T 2xzh_A 162 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 232 (365)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE---------CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEeEeccCCccceeEEEEeeccccccee---------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence 999877543 246788998877654322 22222221111110 00012222211 2577887
Q ss_pred eCCcc--------eEEEEee-c---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCc
Q 002086 715 DGLDI--------VHKFRGF-R---NTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEH 779 (969)
Q Consensus 715 D~~~~--------~~~~~~~-~---~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~ 779 (969)
++... ......+ . ...--.++..++.-..+..-+.-|.|++||+++ +..++...-..+.
T Consensus 233 Ei~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleT------gt~i~~nrIS~d~ 303 (365)
T 2xzh_A 233 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET------GTCIYMNRISGET 303 (365)
T ss_dssp ECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT------CCEEEEEECCSSC
T ss_pred EcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEccc------CcEEEEeccCCCc
Confidence 75321 1111111 1 123345778888778888999999999999999 4544444444444
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.29 E-value=9 Score=42.08 Aligned_cols=100 Identities=10% Similarity=0.064 Sum_probs=62.0
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-EEEEe----ecCCCeEEEEEecCC---CCEEEEEEC----C----
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-CLKLF----AHNDYVTCIQFNPMD---DDYFISGSL----D---- 616 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-~i~~~----~h~~~V~sv~fsp~~---~~~L~sgs~----D---- 616 (969)
.-.....++|.++..|+.+..+|.|+++| ..++ .+..+ ........|+|+| + +..|+++.. +
T Consensus 27 ~l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcc
Confidence 34567899999855677777889999997 3454 22211 1235689999999 5 445544433 3
Q ss_pred CeEEEEeCCCc-------e-EEEEec--CCCCEEEEEEccCCCEEEEE
Q 002086 617 AKVRIWSISDR-------L-VVDWTD--LHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 617 g~I~IWDl~~~-------~-~~~~~~--~~~~V~sv~fspdg~~Lasg 654 (969)
..|..|+.... + ++.... .......++|.|+|.++++.
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 56888887654 1 111111 11234679999999866663
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.05 E-value=2.6 Score=45.16 Aligned_cols=188 Identities=10% Similarity=0.061 Sum_probs=96.5
Q ss_pred EEecCCcEEEEEeC----C-------CcEEEEECCCCcEEEEeecCCC--eEEEEEecCCCCEEEEEECC--------Ce
Q 002086 560 LSWSRSHLLLSSSM----D-------KTVRLWDMETKSCLKLFAHNDY--VTCIQFNPMDDDYFISGSLD--------AK 618 (969)
Q Consensus 560 l~fs~~~~L~Sgs~----D-------gtV~IWDl~t~~~i~~~~h~~~--V~sv~fsp~~~~~L~sgs~D--------g~ 618 (969)
++...+.+++.|+. + ..+.+||..+++-...-....+ -.+++.. ++.+++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 33344677777773 1 1277889988765433211111 1122222 46666777632 45
Q ss_pred EEEEeCCCceEEEEecCCCC--EEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 619 VRIWSISDRLVVDWTDLHEM--VTAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~~~~--V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+.+||+.+.+-........+ -.+++. .+++.++.|+. -..+.+||+.+.+........ .....-.
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~ 191 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ------TARSLFG 191 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS------SCCBSCE
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC------CchhceE
Confidence 89999988764433222211 112222 35667777765 246899999887654432211 1111122
Q ss_pred EEEEcCCCCceEEEEeCCC-----cEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCC-------------
Q 002086 691 GFQFSPSNPSEVLVTSADS-----RIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDS------------- 751 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg-----~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg------------- 751 (969)
.+.+ ++ .+++.|+.++ .+.+||..+..-.... ......-.+++. -++++++.|+.++
T Consensus 192 ~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~ 267 (315)
T 4asc_A 192 ATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTEL 267 (315)
T ss_dssp EEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCcccccccc
Confidence 2223 33 6777777654 4788886543222111 111111112222 2667777777642
Q ss_pred -cEEEEEcCC
Q 002086 752 -QVYVWKREE 760 (969)
Q Consensus 752 -~I~IWdl~t 760 (969)
.|.+||+.+
T Consensus 268 ~~v~~yd~~~ 277 (315)
T 4asc_A 268 NDIWRYNEEE 277 (315)
T ss_dssp EEEEEEETTT
T ss_pred CcEEEecCCC
Confidence 367888876
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.86 E-value=1.1 Score=50.73 Aligned_cols=145 Identities=11% Similarity=0.187 Sum_probs=93.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecC-----CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-----------
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHN-----DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----------- 628 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~-----~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----------- 628 (969)
+..++.+- ++.||.-++......+.+... ..|..+..+| ++.+|+..+ +..|.|-.+..+.
T Consensus 32 ~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 32 GTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 44444433 477888888754434444322 2688899999 899888875 4678888886221
Q ss_pred --EEEEe-c-----CCCCEEEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeeeeeec---ccccCCCCCeEEEEE
Q 002086 629 --VVDWT-D-----LHEMVTAACYTPD---GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ---TKKKSSTRKITGFQF 694 (969)
Q Consensus 629 --~~~~~-~-----~~~~V~sv~fspd---g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~---~~~~~h~~~It~l~f 694 (969)
+..+. + ....|..+.|+|- +..|++-..|+.|++||+......+. .+... .........|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 11111 1 2467999999994 56899999999999999986332222 11100 011233478999999
Q ss_pred cCCCCceEEEEe--CCCcEEEE
Q 002086 695 SPSNPSEVLVTS--ADSRIRIL 714 (969)
Q Consensus 695 spd~~~~l~sgs--~Dg~I~Iw 714 (969)
.+++ -.|.+.+ ..|.|+-.
T Consensus 188 g~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTS-SCEEEEECTTSCEEEEE
T ss_pred cCCC-cEEEEEecCCCCCEEEE
Confidence 9965 6666654 77888764
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.70 E-value=2.1 Score=45.37 Aligned_cols=183 Identities=13% Similarity=0.061 Sum_probs=96.0
Q ss_pred CcEEEEEe-CC-----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCce---
Q 002086 565 SHLLLSSS-MD-----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDRL--- 628 (969)
Q Consensus 565 ~~~L~Sgs-~D-----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~--- 628 (969)
+.+++.|+ .+ ..+.+||+.+.+-...- .....-.+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 34555555 22 46889999887644432 111111222222 56777777755 458999998876
Q ss_pred EEEEecCC---CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 629 VVDWTDLH---EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 629 ~~~~~~~~---~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
-....... .....+.+ +++.++.|+.+ ..+.+||+.+.+........ .....-..+.+ ++ .
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~ 161 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ------TAREGAGLVVA--SG-V 161 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS------SCCBSCEEEEE--TT-E
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC------CCcccceEEEE--CC-E
Confidence 33332221 11222222 56777777654 36889999887755433221 11111122222 33 6
Q ss_pred eEEEEeCC-----CcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 701 EVLVTSAD-----SRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 701 ~l~sgs~D-----g~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
+++.|+.+ ..+.+||..+..-.... ......-.++. .-++++++.|+.+ ..|.+||+.+.
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 77777654 45888886543322211 11111111222 2267777787764 46888998763
No 324
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.46 E-value=3.7 Score=45.03 Aligned_cols=92 Identities=9% Similarity=0.000 Sum_probs=56.7
Q ss_pred eCCCcEEEEECCCCcEEEEee-----cCCCeEEEEEec--------CCCCEEEEEECCCeEEEEeCCCceEEEEecCCCC
Q 002086 572 SMDKTVRLWDMETKSCLKLFA-----HNDYVTCIQFNP--------MDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM 638 (969)
Q Consensus 572 s~DgtV~IWDl~t~~~i~~~~-----h~~~V~sv~fsp--------~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~ 638 (969)
..||.|..++..+|.....+. ...++.. .-.| ..+..+++|+.+|.+...|+.+|+++..+.....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 589999999998885554442 2222221 1000 0357889999999999999999999877665432
Q ss_pred E--------EEEEEc-----cCCCEEEEEeCCCcEEEEE
Q 002086 639 V--------TAACYT-----PDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 639 V--------~sv~fs-----pdg~~Lasgs~dg~I~IwD 664 (969)
. .|.... ..+..|+.|..+..+.+.+
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 1 111111 1235677777777777766
No 325
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.42 E-value=2 Score=46.94 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=90.5
Q ss_pred CCcEEEEEeC-C---------CcEEEEECCCCcEEEEee---cCCCeEEEEEecCCCCEEEEEECC--------------
Q 002086 564 RSHLLLSSSM-D---------KTVRLWDMETKSCLKLFA---HNDYVTCIQFNPMDDDYFISGSLD-------------- 616 (969)
Q Consensus 564 ~~~~L~Sgs~-D---------gtV~IWDl~t~~~i~~~~---h~~~V~sv~fsp~~~~~L~sgs~D-------------- 616 (969)
.+.+++.|+. + ..+.+||+.+.+-...-. ....-.+++. . ++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhc
Confidence 3566666665 2 468899998876544322 1111122222 2 67778888765
Q ss_pred -------------------------CeEEEEeCCCceEEEEecCC--CCE-EEEEEccCCCEEEEEeC------CCcEEE
Q 002086 617 -------------------------AKVRIWSISDRLVVDWTDLH--EMV-TAACYTPDGQNALIGSH------KGSCRL 662 (969)
Q Consensus 617 -------------------------g~I~IWDl~~~~~~~~~~~~--~~V-~sv~fspdg~~Lasgs~------dg~I~I 662 (969)
..+.+||+.+.+-....... ..- .+++.. ++++++.|+. ...+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEE
Confidence 57999999887544332222 111 222222 5566666653 345777
Q ss_pred EEc--CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC----------------------CcEEEEeCCc
Q 002086 663 YSI--EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD----------------------SRIRILDGLD 718 (969)
Q Consensus 663 wDl--~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D----------------------g~I~IwD~~~ 718 (969)
||+ .+.+........ . .........+.+ ++ .+++.|+.+ ..+.+||..+
T Consensus 222 ~d~d~~~~~W~~~~~~~--~--~~~~~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~ 294 (357)
T 2uvk_A 222 LDFTGNNLKWNKLAPVS--S--PDGVAGGFAGIS--ND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN 294 (357)
T ss_dssp EECC---CEEEECCCSS--T--TTCCBSCEEEEE--TT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-
T ss_pred EEecCCCCcEEecCCCC--C--CcccccceEEEE--CC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCC
Confidence 877 444433221110 0 000011112222 33 567777632 2467888653
Q ss_pred ceE-EEEeecCCCCeEEEEEeCCCCEEEEEeCCC------cEEEEEcCCC
Q 002086 719 IVH-KFRGFRNTSSQISAAFNADGKYIISASEDS------QVYVWKREEH 761 (969)
Q Consensus 719 ~~~-~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg------~I~IWdl~t~ 761 (969)
..- .+........ ...++..++++++.|+.++ .|.+++++++
T Consensus 295 ~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 295 GKWDKSGELSQGRA-YGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp --CEEEEECSSCCB-SSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred CceeeCCCCCCCcc-cceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 221 1111111111 1122334778888888653 3666788873
No 326
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.14 E-value=26 Score=42.41 Aligned_cols=182 Identities=9% Similarity=0.115 Sum_probs=108.4
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-----cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA-----HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
.|.++... +..|..++.+ -|..+|..+++...... ....|.++.... ++.+.+ |..+ -|..++..++...
T Consensus 104 ~i~~i~~~-~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 104 DVRTMALQ-GDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEEE-TTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEE
T ss_pred eEEEEEec-CCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceE
Confidence 35555443 3456666666 58889988776554311 234688888876 555554 4544 4888898877654
Q ss_pred EEecC------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 631 DWTDL------HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 631 ~~~~~------~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
..... ...|.++....++..|.+|+. +-+..||..+.+....... ....|.++....++ .|.+
T Consensus 179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--------~~~~i~~i~~d~~g--~lWi 247 (758)
T 3ott_A 179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--------HNNSIKSLALDGNG--DLLA 247 (758)
T ss_dssp EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--------EEEEEEEEEECTTC--CEEE
T ss_pred EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--------CCCeEEEEEEcCCC--CEEE
Confidence 43221 124888888887776666764 4688899877654332111 12347788777765 5556
Q ss_pred EeCCCcEEEEeCCcce-EEEEee------cCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 705 TSADSRIRILDGLDIV-HKFRGF------RNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~-~~~~~~------~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
|+. +-+.+++..... ..+... -....|.++....+|.+- .|+..| |.++
T Consensus 248 gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l~~~ 303 (758)
T 3ott_A 248 GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-ISLS 303 (758)
T ss_dssp EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-EEEE
T ss_pred EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-cccc
Confidence 664 468888865422 222111 112357888888777644 455556 5544
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.99 E-value=4.7 Score=42.92 Aligned_cols=183 Identities=11% Similarity=0.071 Sum_probs=96.5
Q ss_pred CCcEEEEEeC----C-----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCc
Q 002086 564 RSHLLLSSSM----D-----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDR 627 (969)
Q Consensus 564 ~~~~L~Sgs~----D-----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~ 627 (969)
.+.+++.|+. + ..+.+||+.+.+-...- .....-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 3556666654 2 46889999887654432 111111122222 46667776643 35889999887
Q ss_pred eEEEEecCC---CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 628 LVVDWTDLH---EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 628 ~~~~~~~~~---~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+-....... ....++.+ ++..++.|+.+ ..+.+||+.+.+........ ........+.+ ++
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~--~~- 216 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN------TIRSGAGVCVL--HN- 216 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS------SCCBSCEEEEE--TT-
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC------CccccceEEEE--CC-
Confidence 654432222 11222222 56777777654 46899999887654432211 11111222333 33
Q ss_pred ceEEEEeCC-----CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCC
Q 002086 700 SEVLVTSAD-----SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREE 760 (969)
Q Consensus 700 ~~l~sgs~D-----g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t 760 (969)
.+++.|+.+ ..+.+||.....-... .......-.+++. -++++++.|+.+ ..|.+||+.+
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 677777654 4588999664332211 1111111112222 267777887754 3578888876
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.80 E-value=3.9 Score=43.44 Aligned_cols=181 Identities=8% Similarity=0.054 Sum_probs=96.6
Q ss_pred cEEEEEeC--CCcEEEEECCCCcEEEEe--ec-CCCeEEEEEecCCCCEEEEEECC----CeEEEEeCCCceEEEEecCC
Q 002086 566 HLLLSSSM--DKTVRLWDMETKSCLKLF--AH-NDYVTCIQFNPMDDDYFISGSLD----AKVRIWSISDRLVVDWTDLH 636 (969)
Q Consensus 566 ~~L~Sgs~--DgtV~IWDl~t~~~i~~~--~h-~~~V~sv~fsp~~~~~L~sgs~D----g~I~IWDl~~~~~~~~~~~~ 636 (969)
.+++.|+. ...+.+||..+++-...- .. ......+.+ ++.+++.|+.+ ..+.+||+.+.+-.......
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 45555654 367889999887755432 11 111222222 56677777755 66899999887654443322
Q ss_pred C---CEEEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 637 E---MVTAACYTPDGQNALIGSHK------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 637 ~---~V~sv~fspdg~~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
. ....+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+.+ ++ .+++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~iyv~GG~ 158 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML------TQRCSHGMVEA--NG-LIYVCGGS 158 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-EEEEECCE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc------CCcceeEEEEE--CC-EEEEECCC
Confidence 1 1222222 66777777765 46899999887654432211 11111122222 33 56666653
Q ss_pred ---------CCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 708 ---------DSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 708 ---------Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
-..+.+||..+..-... .......-.++... ++++++.|+.+ ..|.+||+.+.
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 34588888665332211 11111111122222 66777777654 35888888763
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.73 E-value=3.9 Score=43.32 Aligned_cols=181 Identities=11% Similarity=0.168 Sum_probs=93.8
Q ss_pred cEEEEEeCC----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCceEEEEec
Q 002086 566 HLLLSSSMD----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDRLVVDWTD 634 (969)
Q Consensus 566 ~~L~Sgs~D----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~~~~~~~ 634 (969)
.+++.|+.+ ..+.+||+.+.+-...- .....-.+++.. ++.+++.|+.+ ..+.+||..+.+-.....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 445555533 45888998887644432 111111122222 56677777754 358899998876544433
Q ss_pred CCC---CEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 635 LHE---MVTAACYTPDGQNALIGSHKG-----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 635 ~~~---~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
... ....+.+ ++..++.|+.++ .+.+||+.+.+........ ........+.+ ++ .+++.|+
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~iyv~GG 163 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN------TRRSSVGVGVV--GG-LLYAVGG 163 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-EEEEECC
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC------CcccCceEEEE--CC-EEEEEeC
Confidence 221 1122222 567777777553 5788998887654432211 11111122222 23 5666665
Q ss_pred CC-------CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCC
Q 002086 707 AD-------SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDS-----QVYVWKREE 760 (969)
Q Consensus 707 ~D-------g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg-----~I~IWdl~t 760 (969)
.+ ..+.+||.....-... .......-.+++. -++++++.|+.++ .+.+||+.+
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCC
Confidence 42 3488888654332211 1111111112222 2677788887653 588888876
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.32 E-value=5.3 Score=42.69 Aligned_cols=188 Identities=10% Similarity=0.117 Sum_probs=95.4
Q ss_pred EEecCCcEEEEEeC----CC-------cEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC-------CeE
Q 002086 560 LSWSRSHLLLSSSM----DK-------TVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-------AKV 619 (969)
Q Consensus 560 l~fs~~~~L~Sgs~----Dg-------tV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-------g~I 619 (969)
++...+.+++.|+. ++ .+.+||..+.+-...- .....-.+++.. ++.+++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 33344677777773 11 2778898877654432 111111222222 56777777754 348
Q ss_pred EEEeCCCceEEEEecCCCCE--EEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEE
Q 002086 620 RIWSISDRLVVDWTDLHEMV--TAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~~~~V--~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~ 691 (969)
.+||+.+.+-........+. .+++. .+++.++.|+. -..+.+||+.+.+........ ........
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~ 202 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK------TPRSMFGV 202 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS------SCCBSCEE
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC------CCcccceE
Confidence 88999887655443322221 11222 46667777764 246899999887654432211 11111122
Q ss_pred EEEcCCCCceEEEEeCC-----CcEEEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCC--------------C
Q 002086 692 FQFSPSNPSEVLVTSAD-----SRIRILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISASED--------------S 751 (969)
Q Consensus 692 l~fspd~~~~l~sgs~D-----g~I~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~D--------------g 751 (969)
+.+ ++ .+++.|+.+ ..+.+||..+..-.. ........-.+++ .-++++++.|+.+ .
T Consensus 203 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 203 AIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EEE--TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EEE--CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceee
Confidence 222 33 677777643 346778865432111 1111111111222 2356777777754 3
Q ss_pred cEEEEEcCC
Q 002086 752 QVYVWKREE 760 (969)
Q Consensus 752 ~I~IWdl~t 760 (969)
.|.+||+.+
T Consensus 279 ~v~~yd~~~ 287 (318)
T 2woz_A 279 DIWKYEDDK 287 (318)
T ss_dssp CEEEEETTT
T ss_pred eEEEEeCCC
Confidence 477888776
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.06 E-value=6.3 Score=43.40 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=63.0
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-------cCCCCEEEEEEccC---CCEEEEE-e--CCCcE
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-------DLHEMVTAACYTPD---GQNALIG-S--HKGSC 660 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-------~~~~~V~sv~fspd---g~~Lasg-s--~dg~I 660 (969)
-...+.|+|.| ++.+|++--..|.|++++..++...... ........|+|+|+ +..|.+. + .++.|
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 45678999999 8887766655899999987665543221 22456899999995 3444443 2 34566
Q ss_pred EEEEcCCC-----ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 661 RLYSIEDS-----KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 661 ~IwDl~~~-----~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
.-|.+... .......+ +.............|.|.|++ .++++.
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i-~~~~p~~~~H~g~~l~fgpDG-~Lyvt~ 157 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTV-FRGIPKGVIHNGGRIAFGPDK-MLYAGT 157 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEE-EEEECCCSSCCCCCEEECTTS-CEEEEC
T ss_pred EEEEeCCCCcccccCCCcEEE-EEcCCCCCCccCccccCCCCC-CEEEEE
Confidence 66766552 11111111 110101222335678999998 444443
No 332
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=91.02 E-value=44 Score=42.84 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=103.8
Q ss_pred CCCEEEEEecC-------CcEEEEEeC-CCcEEEEECCCCcEEEEeec--CCCeEEEEEecC-CCCEEEEEECCCeEEEE
Q 002086 554 LDDVLDLSWSR-------SHLLLSSSM-DKTVRLWDMETKSCLKLFAH--NDYVTCIQFNPM-DDDYFISGSLDAKVRIW 622 (969)
Q Consensus 554 ~~~I~~l~fs~-------~~~L~Sgs~-DgtV~IWDl~t~~~i~~~~h--~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IW 622 (969)
...|.|+++.+ ..+++.|.. |++|+|+++.+.+.+....- .....++.+... ...+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 34688888875 368999996 99999999998777765532 335566655432 23578899999998655
Q ss_pred eC--CCceEEEE---ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe-EEEEEcC
Q 002086 623 SI--SDRLVVDW---TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI-TGFQFSP 696 (969)
Q Consensus 623 Dl--~~~~~~~~---~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I-t~l~fsp 696 (969)
.+ .++.+... .-...++.-..+...|..-+.++.+....+|.-. +++. ...+ ....+ ....|+.
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~-~s~l--------~~~~v~~~~~F~s 702 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV-FSNV--------NLKEVNYMCPLNS 702 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE-EEEB--------SSSCCCEEEEECC
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE-Eecc--------ChHHhceEeccCc
Confidence 54 44544321 2223455544455555555555556666666543 2221 1111 11122 2334543
Q ss_pred CC-CceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 697 SN-PSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 697 d~-~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
.. +.-++..+ ++.++|..+.+. ....+...-...+..++++|+.+.++.+.
T Consensus 703 e~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 703 DGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp SSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred ccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 22 23344433 455888764321 11122223345678899999887766554
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=90.52 E-value=6 Score=45.24 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec---------CCCCEEEEEEccC---CCEEEEEeC-----
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---------LHEMVTAACYTPD---GQNALIGSH----- 656 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---------~~~~V~sv~fspd---g~~Lasgs~----- 656 (969)
-...+.|+|.| ++.++++-...+.|++++..++....+.. ....+..|+|+|+ +..|.+...
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 88866665444579988876554332221 2345779999995 555554432
Q ss_pred --------CCcEEEEEcCCC--ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 657 --------KGSCRLYSIEDS--KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 657 --------dg~I~IwDl~~~--~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
...|.-|+.... .+.....+ +.............|+|.|++ .++++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i-~~~~p~~~~H~~~~l~f~pDG-~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDL-LAGLPSSKDHQSGRLVIGPDQ-KIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEE-EEEECCCSSCCEEEEEECTTS-CEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEE-EEcCCCCCCCCCCeEeECCCC-eEEEEE
Confidence 235666665432 22111111 111111223457899999998 444443
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.36 E-value=3.6 Score=43.86 Aligned_cols=183 Identities=9% Similarity=0.034 Sum_probs=95.9
Q ss_pred CcEEEEEeC----CCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEEC----C-----CeEEEEeCCCceE
Q 002086 565 SHLLLSSSM----DKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSL----D-----AKVRIWSISDRLV 629 (969)
Q Consensus 565 ~~~L~Sgs~----DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~----D-----g~I~IWDl~~~~~ 629 (969)
+.+++.|+. -..+.+||..+.+-...- .....-.+++.. ++.+++.|+. + ..+.+||+.+.+-
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 455666653 246889999887654432 111111122332 4667777665 2 4588999988765
Q ss_pred EEEecCC---CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 630 VDWTDLH---EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 630 ~~~~~~~---~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
....... .....+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+.+ ++ .+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~i 171 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML------TRRIGVGVAVL--NR-LL 171 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS------SCCBSCEEEEE--TT-EE
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC------ccccceEEEEE--CC-EE
Confidence 4433222 11222222 56677776643 46889999887654432211 11111222233 33 67
Q ss_pred EEEEeCC-----CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 702 VLVTSAD-----SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 702 l~sgs~D-----g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
++.|+.+ ..+.+||.....-... .......-.+++.. ++++++.|+.+ ..|.+||+.+.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 7777654 4588888654322211 11111111122222 67777787765 45888998763
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.89 E-value=0.47 Score=52.29 Aligned_cols=195 Identities=8% Similarity=0.024 Sum_probs=103.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeEEEEEec-CCCCEEEEE--ECCCeEEEEeCCCceEEEEecCC---
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVTCIQFNP-MDDDYFISG--SLDAKVRIWSISDRLVVDWTDLH--- 636 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp-~~~~~L~sg--s~Dg~I~IWDl~~~~~~~~~~~~--- 636 (969)
+.+++.++.||.|.-+|..+|+.+-.+... .++....-.. ..+..++.+ +.||.|..++..+|.........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 578999999999999999999999888544 3333221111 012244444 58999999999888544222211
Q ss_pred --CCEEE---EEE-c----cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC--CCeEEEE---EcC-CCCc
Q 002086 637 --EMVTA---ACY-T----PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST--RKITGFQ---FSP-SNPS 700 (969)
Q Consensus 637 --~~V~s---v~f-s----pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~--~~It~l~---fsp-d~~~ 700 (969)
.++.. ..+ . ..+..+++|+.+|.+.-.|+.+++.......... ..+. ....|.. +.. ....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~---~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK---NGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB---CC--------------------CC
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC---cccccccccccccccccccccCCC
Confidence 11111 000 0 1456888999999999999999998765432110 0000 0000111 100 1114
Q ss_pred eEEEEeCCCcEEEEeCCcc--eEEEEeecCCCC---eE-EEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 701 EVLVTSADSRIRILDGLDI--VHKFRGFRNTSS---QI-SAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~---V~-sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
.++.+..+..+.+.+.... ...+........ +. .-.++.|+.+ +.++.||.|+-+|..+++.
T Consensus 167 ~v~ig~~~y~v~~~~~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 167 MIVIGKTIFELGIHSYDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEEEEECEECCTTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred eEEEecceEEEEEECCCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 5666666666666552110 001111100000 00 0001234666 4478899999999887543
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=89.59 E-value=18 Score=38.35 Aligned_cols=181 Identities=13% Similarity=0.129 Sum_probs=93.7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe-ec-CCCeEEEEEecCCCCEEEEEEC----C-------CeEEEEeCCCceEEEEe
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLF-AH-NDYVTCIQFNPMDDDYFISGSL----D-------AKVRIWSISDRLVVDWT 633 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~-~h-~~~V~sv~fsp~~~~~L~sgs~----D-------g~I~IWDl~~~~~~~~~ 633 (969)
+++.|+ ..+.+||..+++-...- .. ........... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 445555 57999999988754311 11 11222222223 6778888874 1 12788999887654433
Q ss_pred cCCCCE--EEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 634 DLHEMV--TAACYTPDGQNALIGSHK--------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 634 ~~~~~V--~sv~fspdg~~Lasgs~d--------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
....+- .+++.. ++..++.|+.+ ..+.+||..+.+......++ .....-..+.+ ++ .+++
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~iyv 153 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP------YVVYGHTVLSH--MD-LVYV 153 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS------SCCBSCEEEEE--TT-EEEE
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC------CcccceeEEEE--CC-EEEE
Confidence 222211 112222 56666776632 46899999887654332211 11111122222 23 5777
Q ss_pred EEeC-C-----CcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCC
Q 002086 704 VTSA-D-----SRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDS-----QVYVWKREEH 761 (969)
Q Consensus 704 sgs~-D-----g~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg-----~I~IWdl~t~ 761 (969)
.|+. + ..+.+||..+..-.... ......-.+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 7765 2 35888886543222111 11111111222 22677888887654 4888888763
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.14 E-value=9.3 Score=49.42 Aligned_cols=202 Identities=13% Similarity=0.136 Sum_probs=111.7
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEe-ec----CCCeEEEEEecCCCCEEEEEE-------CCCeEEEEe
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMET-KSCLKLF-AH----NDYVTCIQFNPMDDDYFISGS-------LDAKVRIWS 623 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-~h----~~~V~sv~fsp~~~~~L~sgs-------~Dg~I~IWD 623 (969)
|.-=.|-..+.|+-.+ +..|.-|++.. ..+.+.| .| ...|..-..++ +..+++..| ..|.+.+|.
T Consensus 108 VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred ceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeee
Confidence 4444454434433333 45699999964 3344444 22 45666667777 666555433 358899999
Q ss_pred CCCceEEEEecCCCCEEEEEEc--cC-CCEEEEEeC---CCcEEEEEcCCC----ceeeeeeeeecccccCCCCCeEEEE
Q 002086 624 ISDRLVVDWTDLHEMVTAACYT--PD-GQNALIGSH---KGSCRLYSIEDS----KLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 624 l~~~~~~~~~~~~~~V~sv~fs--pd-g~~Lasgs~---dg~I~IwDl~~~----~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
...+....+.+|......+.+. +. ...++.+.. .+.++|.++... .......+++............++.
T Consensus 186 ~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~ 265 (1630)
T 1xi4_A 186 VDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (1630)
T ss_pred cccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE
Confidence 8776544444443322222221 11 122222221 268888888543 1111111222222223344556677
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.++.. ..+...+.-|.|.+||..+....+...-....|...+-.....=++.....|.|.--.+++.
T Consensus 266 vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 266 ISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 77765 57888899999999998888777766555555554444443333455556777777777653
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.62 E-value=2.3 Score=43.76 Aligned_cols=138 Identities=10% Similarity=-0.021 Sum_probs=77.2
Q ss_pred CCEEEEEECCCeEEEEeCCCceE------EEEecC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 607 DDYFISGSLDAKVRIWSISDRLV------VDWTDL--HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~------~~~~~~--~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
+.+|++...| +|+.=....+.. ....+. -..+..++|+|+|.+.++ .+|.++-.+..+.....-...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-- 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-- 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH--
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc--
Confidence 4556666677 666555544331 122233 246779999999987777 677766666544221110000
Q ss_pred cccc-cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--c-----eEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 679 QTKK-KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--I-----VHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 679 ~~~~-~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~-----~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
.... ...-.....+.|.|++ .+.++ .||.|+-++..+ . .....+...-..+..|.|.|+|.+.+.. |
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred ccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence 0000 0011114678899987 44444 669998887421 0 1122222233567899999999877766 7
Q ss_pred CcEE
Q 002086 751 SQVY 754 (969)
Q Consensus 751 g~I~ 754 (969)
+.++
T Consensus 154 g~ly 157 (236)
T 1tl2_A 154 QQFY 157 (236)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7754
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=87.66 E-value=6.4 Score=43.24 Aligned_cols=108 Identities=12% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-E-------ecCCCCEEEEEEccC---CCEEEEEe-C-----
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-W-------TDLHEMVTAACYTPD---GQNALIGS-H----- 656 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~-------~~~~~~V~sv~fspd---g~~Lasgs-~----- 656 (969)
-...+.|+|.| +++.|+++...|.|++++... .... + .........|+|+|+ +..|.+.. .
T Consensus 17 l~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLP-DNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECS-TTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcC-CCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 34568999999 887344556789999998543 2211 1 112345789999996 44554443 2
Q ss_pred --CCcEEEEEcCCC--ceeeeeeeeecccc--cCCCCCeEEEEEcCCCCceEEEE
Q 002086 657 --KGSCRLYSIEDS--KLHQLNQVDFQTKK--KSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 657 --dg~I~IwDl~~~--~~~~~~~~~~~~~~--~~h~~~It~l~fspd~~~~l~sg 705 (969)
...|..|++... .+.....+ +.... .........|+|.|++ .++++.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i-~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~ 147 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTV-FRQMPKLSTGNHFGGRLVFDGKG-YLFIAL 147 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEE-EECSSCCBSSSCCCCCEEECSSS-EEEEEE
T ss_pred CceeEEEEEEECCCCCCCCceEEE-EEECCCCCCCcccCccEEECCCC-cEEEEE
Confidence 235666766543 22111111 11100 0111223569999998 444443
No 340
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.60 E-value=28 Score=38.30 Aligned_cols=158 Identities=10% Similarity=-0.014 Sum_probs=79.1
Q ss_pred CCEEEEEecC--CcEEEEEeCCC----cEEEEECCCCcEEEEee---------------cCCCeEEEEEecCC-CCEEEE
Q 002086 555 DDVLDLSWSR--SHLLLSSSMDK----TVRLWDMETKSCLKLFA---------------HNDYVTCIQFNPMD-DDYFIS 612 (969)
Q Consensus 555 ~~I~~l~fs~--~~~L~Sgs~Dg----tV~IWDl~t~~~i~~~~---------------h~~~V~sv~fsp~~-~~~L~s 612 (969)
..|.+|++.| ...|..+...| .|... ...++....+. ....|.+|++.|.+ ...|.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4588999987 55566665555 34433 22333222221 11257889998744 566666
Q ss_pred EECCCeEEEEeCCCceEEEEec-------------------CCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceee
Q 002086 613 GSLDAKVRIWSISDRLVVDWTD-------------------LHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~~~~~~~-------------------~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
+...+.|...+-....-..... ....+.+|.++|. ...|+++..++.|...+-.......
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~ 213 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKP 213 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceE
Confidence 6666666555432222111110 1235789999884 4455666555544443222211111
Q ss_pred eeeeeeccc-cc----CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 673 LNQVDFQTK-KK----SSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 673 ~~~~~~~~~-~~----~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.. ...... .. .....+.+|.+.|.++..|+++...+ |+..+
T Consensus 214 ~~-~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 214 LN-RGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CC-TTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred CC-CCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 10 000000 00 00135889999997656777776554 44443
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=86.27 E-value=19 Score=38.17 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=90.3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe-ec--CCCeEEEEEecCCCCEEEEEEC----CC-------eEEEEeCCCceEEEE
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLF-AH--NDYVTCIQFNPMDDDYFISGSL----DA-------KVRIWSISDRLVVDW 632 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~-~h--~~~V~sv~fsp~~~~~L~sgs~----Dg-------~I~IWDl~~~~~~~~ 632 (969)
+++.|+. .+.+||..+++-...- .. ...-.+++. . ++.+++.|+. ++ .+.+||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVT-Q-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEEC-S-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEE-E-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 3788999888755421 11 112223332 2 6778888873 12 277889888765443
Q ss_pred ecCCCC--EEEEEEccCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 633 TDLHEM--VTAACYTPDGQNALIGSHK-------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 633 ~~~~~~--V~sv~fspdg~~Lasgs~d-------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
.....+ -.+++.. ++..++.|+.+ ..+.+||+.+.+.......+ .....| ..+. .++ .+++
T Consensus 94 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~----~~~~--~~~-~iyv 163 (318)
T 2woz_A 94 PPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP--IKVYGH----NVIS--HNG-MIYC 163 (318)
T ss_dssp SCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS--SCEESC----EEEE--ETT-EEEE
T ss_pred CCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC--Cccccc----EEEE--ECC-EEEE
Confidence 222211 1122222 56677777754 25888999887654432211 111111 1222 233 5666
Q ss_pred EEeC------CCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCC
Q 002086 704 VTSA------DSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDS-----QVYVWKREEH 761 (969)
Q Consensus 704 sgs~------Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg-----~I~IWdl~t~ 761 (969)
.|+. -..+.+||..+..-... .......-.+++. -++++++.|+.++ .+.+||+.+.
T Consensus 164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 6653 23588899665332211 1111111112222 2667777776543 4678888763
No 342
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.40 E-value=42 Score=36.35 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=69.2
Q ss_pred CEEEEEec-CCcEEEEEeCCCcEEEEECC--CCc---------EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 556 DVLDLSWS-RSHLLLSSSMDKTVRLWDME--TKS---------CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 556 ~I~~l~fs-~~~~L~Sgs~DgtV~IWDl~--t~~---------~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+..+... ..+.|+..+..|.+..+.+. .-. ....+.....|.++...+ .+.+|+.++..|.++.-.
T Consensus 147 ~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 147 ELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEE
Confidence 34444333 36778888888988888776 211 111124456777777765 567899999999999887
Q ss_pred CCC-------ceEEE---EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 624 ISD-------RLVVD---WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 624 l~~-------~~~~~---~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
+.. +.-+. +....+.+..+....+...++..+.+|.+.-++...
T Consensus 226 l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 226 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp GGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred HHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 632 11111 112134455555444556788888888888887754
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.35 E-value=16 Score=44.12 Aligned_cols=195 Identities=11% Similarity=0.149 Sum_probs=103.8
Q ss_pred cCCcEEEEEeCC----CcEEEEECCCCcEEEEe-e-------cC-CCeEEEEEecCCCCEEEEEECC------CeEEEEe
Q 002086 563 SRSHLLLSSSMD----KTVRLWDMETKSCLKLF-A-------HN-DYVTCIQFNPMDDDYFISGSLD------AKVRIWS 623 (969)
Q Consensus 563 s~~~~L~Sgs~D----gtV~IWDl~t~~~i~~~-~-------h~-~~V~sv~fsp~~~~~L~sgs~D------g~I~IWD 623 (969)
..+.+++.|+.+ ..+.+||..+++....- . .. ..-.++.+.. ++.+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 346677777753 46889998887655433 1 11 1122333321 35566777654 3588999
Q ss_pred CCCceEEEEecCCC--CEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 624 ISDRLVVDWTDLHE--MVTAACYTPDGQNALIGSHKG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 624 l~~~~~~~~~~~~~--~V~sv~fspdg~~Lasgs~dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+.+..-........ .-.+++...++..++.|+.++ .+.+||+.+.......... ...........+.+.....
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g---~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD---EFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSS---GGGGSCCBSCEEEEETTTT
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCC---CCCCcccceeEEEEeCCCC
Confidence 98875443322221 112333334788888887655 7999999987654332100 0011112223345555423
Q ss_pred ceEEEEeC--C-----CcEEEEeCCcce-------EEEEee-cCCCCeEEEEEeCCCCEEEEEeCC--------CcEEEE
Q 002086 700 SEVLVTSA--D-----SRIRILDGLDIV-------HKFRGF-RNTSSQISAAFNADGKYIISASED--------SQVYVW 756 (969)
Q Consensus 700 ~~l~sgs~--D-----g~I~IwD~~~~~-------~~~~~~-~~~~~V~sl~fspdg~~LaSgs~D--------g~I~IW 756 (969)
..++.|+. + ..+.+||..... ...... .....-.+++...++++++.|+.+ ..|.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 67777765 2 348888854432 112111 111111233333347778888743 458888
Q ss_pred EcCCC
Q 002086 757 KREEH 761 (969)
Q Consensus 757 dl~t~ 761 (969)
|+.+.
T Consensus 632 d~~t~ 636 (695)
T 2zwa_A 632 DPLSE 636 (695)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 88773
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.65 E-value=48 Score=38.65 Aligned_cols=195 Identities=13% Similarity=0.144 Sum_probs=112.7
Q ss_pred CcEEEEEe-CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEe--cCCCCEEEEEEC-------CCeE------------E
Q 002086 565 SHLLLSSS-MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFN--PMDDDYFISGSL-------DAKV------------R 620 (969)
Q Consensus 565 ~~~L~Sgs-~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fs--p~~~~~L~sgs~-------Dg~I------------~ 620 (969)
+++|..-. ....|..-++...++-+++ .....+.++.|. | +..|+++++. ||.. .
T Consensus 142 GrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 142 GKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 45555555 5677888899988887766 567788888887 5 6678887765 2321 1
Q ss_pred EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---------------cEEEEEcC-------CCceeeee--ee
Q 002086 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---------------SCRLYSIE-------DSKLHQLN--QV 676 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---------------~I~IwDl~-------~~~~~~~~--~~ 676 (969)
..|..+.++............+...++|.+.++.+.+. .+.++++. .++..... .+
T Consensus 221 ~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 221 AIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred EEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 11222222221111122333455577888887766532 36666653 12211111 01
Q ss_pred eeccccc------------CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE------------EEEeecCCCCe
Q 002086 677 DFQTKKK------------SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH------------KFRGFRNTSSQ 732 (969)
Q Consensus 677 ~~~~~~~------------~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~------------~~~~~~~~~~V 732 (969)
.+..... .-.....++.++|+|...++.+-.+.++.++|..+... ...........
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP 380 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP 380 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE
T ss_pred eEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc
Confidence 1110000 11234456789999966666667889999999653211 11112223345
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
...+|.++|.-..|---|..|.-|++..
T Consensus 381 lHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 381 LHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cEEEECCCCceEeeeeecceEEEEeccH
Confidence 6789999995555666899999999975
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=81.08 E-value=16 Score=47.22 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=111.7
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecC-----
Q 002086 562 WSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDL----- 635 (969)
Q Consensus 562 fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~----- 635 (969)
.+|...+++--...++.|+|+.+...++.+.....|.-=.|- +.+.|+-.+ +..|+.|++.+. .++..+..
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcc
Confidence 345333333334789999999999999988877787777776 455555444 467999999642 33322222
Q ss_pred CCCEEEEEEccCCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc--CCCCceEEEEe
Q 002086 636 HEMVTAACYTPDGQNALIGS-------HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS--PSNPSEVLVTS 706 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs-------~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs--pd~~~~l~sgs 706 (969)
...|..-..+++.++++..+ -.|.+.+|.++....... .+|......+... +.....++.+.
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i---------egha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh---------hHhHhhhheeccCCCCCCceEEEEEE
Confidence 24577777888888877533 357888888876543221 2222222222111 11101111111
Q ss_pred ---CCCcEEEEeCCcc---eEEE-----Eee-c---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCC
Q 002086 707 ---ADSRIRILDGLDI---VHKF-----RGF-R---NTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTG 767 (969)
Q Consensus 707 ---~Dg~I~IwD~~~~---~~~~-----~~~-~---~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~ 767 (969)
..+.+.|.++... ...+ ..+ . ...--.++..++.-..+..-+.-|.|++||+.++.++-..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 1256777775321 0111 000 0 1122345677777778888889999999999997655443
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.20 E-value=73 Score=34.81 Aligned_cols=189 Identities=7% Similarity=0.034 Sum_probs=92.6
Q ss_pred CcEEEEEeCCCcEEEEECC-CCcEEEE---eecCCCeEEEEEecCCCCEEEEEECCC----eEEEEeCCCceEEEEec--
Q 002086 565 SHLLLSSSMDKTVRLWDME-TKSCLKL---FAHNDYVTCIQFNPMDDDYFISGSLDA----KVRIWSISDRLVVDWTD-- 634 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~-t~~~i~~---~~h~~~V~sv~fsp~~~~~L~sgs~Dg----~I~IWDl~~~~~~~~~~-- 634 (969)
...|..|...| +.+++.. .+..... ......|.+|++.|.+...|.++...| .|...+ ..++......
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 45777777777 4444433 2322221 223457999999985556666665555 454432 2222111111
Q ss_pred -------------CCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeee-eccc---------ccCCCCCe
Q 002086 635 -------------LHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVD-FQTK---------KKSSTRKI 689 (969)
Q Consensus 635 -------------~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-~~~~---------~~~h~~~I 689 (969)
....|.++++.|. ...|.++...+.|...+-............ .... .......+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1124778899872 456666666666554432222221111000 0000 00123468
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEeC-CcceEEEE-eecC----------CCCeEEEEEeCC-CCEEEEEeCCCcEEEE
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILDG-LDIVHKFR-GFRN----------TSSQISAAFNAD-GKYIISASEDSQVYVW 756 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD~-~~~~~~~~-~~~~----------~~~V~sl~fspd-g~~LaSgs~Dg~I~IW 756 (969)
.+|.+.|.++..|+++..++.|+..+- ...-..+. .... ...+.++.++|+ ...|..+...+ |+..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 899999865456666665555555432 11111111 0000 124788999985 45666666444 4443
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=79.25 E-value=58 Score=34.66 Aligned_cols=161 Identities=7% Similarity=0.009 Sum_probs=87.1
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC--------------CeEEEEeCCCceEEEEecCCCCE
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD--------------AKVRIWSISDRLVVDWTDLHEMV 639 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D--------------g~I~IWDl~~~~~~~~~~~~~~V 639 (969)
++.|...+.......++-... +--+++ ++++|+-+... ..|+..++...+...+....
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~~----~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~--- 107 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSNDT----AMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP--- 107 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEEE----EEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---
T ss_pred CceEEEEcCCCCCCEEccCCc----eeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---
Confidence 566666666655544433221 234566 67776665442 46888888777544443322
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 640 TAACYTPDGQNALIGS----HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs----~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
...|++++++|+-.. ....|+..++......... .+. + ..|++++..++.+......|+..+
T Consensus 108 -~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt---------~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~ 173 (302)
T 3s25_A 108 -CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK---------NHY--L--FTCNTSDRYFYYNNPKNGQLYRYD 173 (302)
T ss_dssp -EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE---------SSC--C--CCSEEETTEEEEECTTTCCEEEEE
T ss_pred -ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe---------CCC--c--eEeeEECCEEEEEeCCCceEEEEE
Confidence 236778899888765 3445666666654332211 111 1 345667744444444467788888
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCC
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS--QVYVWKREE 760 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg--~I~IWdl~t 760 (969)
+.......- ... .. ...+.|++.+|+-...++ .|..-+++.
T Consensus 174 l~g~~~~~l-~~~--~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 174 TASQSEALF-YDC--NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp TTTTEEEEE-ECS--CE-EEEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred CCCCCEEEE-eCC--Cc-cceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 654332221 222 12 234669998888766543 455555543
No 348
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.66 E-value=69 Score=33.64 Aligned_cols=200 Identities=11% Similarity=0.095 Sum_probs=113.7
Q ss_pred CEEEEEecC-CcEEEEEeCCCcEEEEE---CCCCcEEEEeecCCCeEEEEEecC-CCCEEEEEECCCeEEEEeCCCc---
Q 002086 556 DVLDLSWSR-SHLLLSSSMDKTVRLWD---METKSCLKLFAHNDYVTCIQFNPM-DDDYFISGSLDAKVRIWSISDR--- 627 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~DgtV~IWD---l~t~~~i~~~~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWDl~~~--- 627 (969)
.+..+.... .++|+.-+.+|.++--. +........+.....|..+.. +. ++.+++..+.+|.|+-..+..-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 444444333 45666677777766433 222111001444566766654 31 3678999999999999887442
Q ss_pred ---eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--eeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 628 ---LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL--NQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 628 ---~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~--~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
.....+...+.+..+........++..+..|.+..+....-..... ..... .. -.....|..+...+++ ..+
T Consensus 104 ~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~-i~-L~~~d~vv~~~~~~~~-~~l 180 (276)
T 3no0_A 104 AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQG-IK-LEKNDETSGLRIWNGE-PYL 180 (276)
T ss_dssp STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC-CC-CCTTCCEEEEEEESSC-SEE
T ss_pred cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE-Ec-cCCCCEEEEEEEeCCC-CEE
Confidence 1111122335666666666677899999999998887654322110 00000 01 1223556665554444 588
Q ss_pred EEEeCCCcEEEEeCCcce-------EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE--EEcCC
Q 002086 703 LVTSADSRIRILDGLDIV-------HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV--WKREE 760 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~-------~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I--Wdl~t 760 (969)
+..+..|.++.....+.. ..... .....+..+....+...++..+.+|.+.. +++.+
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 888999998888733211 11111 23344555544444456777788888888 88765
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.95 E-value=95 Score=34.33 Aligned_cols=171 Identities=8% Similarity=0.112 Sum_probs=93.7
Q ss_pred cEEEEECCCC--cEEEEee-------cCCCeEEEEEe---cC--C-CCEEEEE-ECCCeEEEEeCCCceEEEEec----C
Q 002086 576 TVRLWDMETK--SCLKLFA-------HNDYVTCIQFN---PM--D-DDYFISG-SLDAKVRIWSISDRLVVDWTD----L 635 (969)
Q Consensus 576 tV~IWDl~t~--~~i~~~~-------h~~~V~sv~fs---p~--~-~~~L~sg-s~Dg~I~IWDl~~~~~~~~~~----~ 635 (969)
.|.+||+.+. +.++.+. ....+..+.+. |. + +.+++.+ ...+-|.|+|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999998 8888762 23468888887 21 1 3344443 346789999999886554431 0
Q ss_pred ---------------CCCEEEEEEccC----CCEEEEEeCCCcEEEEEcCCCceee---eeeeeecccccCCCCCeEEEE
Q 002086 636 ---------------HEMVTAACYTPD----GQNALIGSHKGSCRLYSIEDSKLHQ---LNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 636 ---------------~~~V~sv~fspd----g~~Lasgs~dg~I~IwDl~~~~~~~---~~~~~~~~~~~~h~~~It~l~ 693 (969)
...+..|+++|+ ++.|......+. ++|.+.+..+.. ...+..... ++....-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEE
Confidence 135778888887 666666554442 233332111100 011111111 11123445567
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCc-ce-----EEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLD-IV-----HKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~-~~-----~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
+.+..+.++++--....|..|+... .. ..+..-..-.....+.+..+|.+.+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 7643336666667788899999765 21 2222222334456676666665544443
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=76.85 E-value=77 Score=33.23 Aligned_cols=182 Identities=13% Similarity=0.011 Sum_probs=96.8
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCC-cEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEEe
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMETK-SCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDWT 633 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~-~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~ 633 (969)
.|..|+......++. . ||.|..|-.... ++-....-...|..|+... .+.+.-. ||.|+.|-... +++-...
T Consensus 64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 455566555445554 4 899999976532 2111111234688888753 4444445 99999997654 2221111
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
.....|..++.-.+ +.++-. +|.|+.|-......... + ......|..++.... ..++. .|+.|+.
T Consensus 138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~---p-----~~~~~~v~~i~~G~~--hs~al--~~G~v~~ 202 (282)
T 3qhy_B 138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV---P-----AEAQSGVDDVAGGIF--HSLAL--KDGKVIA 202 (282)
T ss_dssp GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC---C-----GGGGSSEEEEEECSS--EEEEE--ETTEEEE
T ss_pred cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC---c-----eecCCCeEEEEecCC--EEEEE--ECCeEEE
Confidence 12245666665443 333333 79999997654322110 0 111345777776653 23444 5999999
Q ss_pred EeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 714 LDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 714 wD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|-....-+.-........|..++......++++ ||.|+.|-....
T Consensus 203 wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 203 WGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp EECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred EECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 963321110000111234666665444333333 999999987764
No 351
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=76.38 E-value=89 Score=33.67 Aligned_cols=197 Identities=11% Similarity=0.080 Sum_probs=107.4
Q ss_pred CCcEEEEEeCCCcEEEEECC---------CCcEEE---EeecCCCeEEEEEecC--CCCEEEEEECCCeEEEEeCCC---
Q 002086 564 RSHLLLSSSMDKTVRLWDME---------TKSCLK---LFAHNDYVTCIQFNPM--DDDYFISGSLDAKVRIWSISD--- 626 (969)
Q Consensus 564 ~~~~L~Sgs~DgtV~IWDl~---------t~~~i~---~~~h~~~V~sv~fsp~--~~~~L~sgs~Dg~I~IWDl~~--- 626 (969)
..+.|+..+..|.++-.... .|..+. .+.....|.++...+. ++.+++.++.+|.++-..+..
T Consensus 49 t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~ 128 (323)
T 1wp5_A 49 TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKA 128 (323)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCC
T ss_pred CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhh
Confidence 35677777788876665542 122211 1233455666544331 256899999999999988731
Q ss_pred -----ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 627 -----RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 627 -----~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
+.....+...+.+..+........++..+.+|.+..+....-........-.....-.....|.++...+.+...
T Consensus 129 ~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ 208 (323)
T 1wp5_A 129 QRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDES 208 (323)
T ss_dssp SCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCE
T ss_pred ccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcE
Confidence 211111222355666555556678889999999998887643221100000000011234556666554444226
Q ss_pred EEEEeCCCcEEEEeCCcc---------eEEEEeec-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 702 VLVTSADSRIRILDGLDI---------VHKFRGFR-NTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~---------~~~~~~~~-~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+++.+..|..+..+.... ...+.... ....+..+....++..|+..+..|.+....+.+
T Consensus 209 ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 209 IVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 888888888777764321 11111111 122444443334455667777788877777765
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=75.33 E-value=36 Score=40.99 Aligned_cols=105 Identities=15% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCcEEEEEeCC------CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCC--eEEEEeCCCceEEEEe
Q 002086 564 RSHLLLSSSMD------KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDA--KVRIWSISDRLVVDWT 633 (969)
Q Consensus 564 ~~~~L~Sgs~D------gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg--~I~IWDl~~~~~~~~~ 633 (969)
.+.+++.|+.+ ..+.+||..+..-...- .....-.+++... ++.+++.|+.++ .+.+||+.+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 46677777643 35888999887544332 1111122333323 677888887655 6999999887644433
Q ss_pred c------CCCCEEEEEEccC-CCEEEEEeC--C-----CcEEEEEcCCCc
Q 002086 634 D------LHEMVTAACYTPD-GQNALIGSH--K-----GSCRLYSIEDSK 669 (969)
Q Consensus 634 ~------~~~~V~sv~fspd-g~~Lasgs~--d-----g~I~IwDl~~~~ 669 (969)
. ......++.+..+ +..++.|+. + ..+.+||+.+..
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 2 1122233555555 667777765 2 468899998877
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=73.84 E-value=1e+02 Score=33.22 Aligned_cols=149 Identities=11% Similarity=0.114 Sum_probs=90.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCc-------EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC--Cce-------
Q 002086 565 SHLLLSSSMDKTVRLWDMETKS-------CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS--DRL------- 628 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~-------~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~--~~~------- 628 (969)
+.+++..+.+|.|+--.+..-. ....+...+.+..+.... ....|+..+..|.+..+... .-.
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 6899999999999998765321 111223455666666555 56788888999999888776 211
Q ss_pred EEEE--ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--eeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 629 VVDW--TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL--NQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 629 ~~~~--~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~--~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
=+.. +...+.|.++...+.+.+++..+..|.++.-.+........ ..+ ...........+..+.....+ ..++.
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~-~~~~l~~~~d~lv~~~~~~~~-~~i~l 265 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV-LTVMYDRRRGRLVGALIVDDD-SELYA 265 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE-ESSCCCTTTCSEEEEEEECTT-CEEEE
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE-EEEEecCCCCeEEEEEEeCCC-ccEEE
Confidence 0111 22345677777777777999999999999888765433211 000 001111112345554444333 46777
Q ss_pred EeCCCcEEEEeC
Q 002086 705 TSADSRIRILDG 716 (969)
Q Consensus 705 gs~Dg~I~IwD~ 716 (969)
.+.+|.+.-++.
T Consensus 266 ~T~~G~~ir~~~ 277 (327)
T 3uc1_A 266 VTSGGGVIRTAA 277 (327)
T ss_dssp EEGGGCEEEEEG
T ss_pred EcCCCeEEEEeh
Confidence 777787777763
No 354
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.47 E-value=87 Score=32.86 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=88.1
Q ss_pred CCcEEEEEeCCCcEEEEECCCCc------EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC---------ce
Q 002086 564 RSHLLLSSSMDKTVRLWDMETKS------CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD---------RL 628 (969)
Q Consensus 564 ~~~~L~Sgs~DgtV~IWDl~t~~------~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~---------~~ 628 (969)
++.+++..+.+|.|+-..+..-. ....+.-.+.+..+.... ....++..+..|.++.+.... |.
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 35789999999999998865432 111223456666666665 567888899999998887632 11
Q ss_pred EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 629 VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 629 ~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
....+...+.|..+....++..++..+..|.++...+...........-.... .....+..+.....+ ..++..+.+
T Consensus 158 ~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~-~~i~~~t~~ 234 (276)
T 3no0_A 158 QGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEE-VELLITTKN 234 (276)
T ss_dssp ECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSE-EEEEEEETT
T ss_pred EEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCC-CEEEEEcCC
Confidence 11112233567666666667799999999999998876543221100000000 112334444333222 466666777
Q ss_pred CcEEE--EeC
Q 002086 709 SRIRI--LDG 716 (969)
Q Consensus 709 g~I~I--wD~ 716 (969)
|.+.. ++.
T Consensus 235 G~~ir~~~~~ 244 (276)
T 3no0_A 235 GKAFYDKINQ 244 (276)
T ss_dssp SCEEEEEEEG
T ss_pred CeEEEeeeCH
Confidence 77666 653
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.73 E-value=41 Score=38.32 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=62.8
Q ss_pred CCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc-----CCCCCeEEEEEcCC---CCceEEEEeC
Q 002086 637 EMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK-----SSTRKITGFQFSPS---NPSEVLVTSA 707 (969)
Q Consensus 637 ~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~-----~h~~~It~l~fspd---~~~~l~sgs~ 707 (969)
.....|+|.|+|. .|+++...|.|++++....... .....+..... .....+..|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~-~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFK-EPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCS-SCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeee-eeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4578999999996 5666778999999975432110 00011111111 22567899999996 2234443332
Q ss_pred --C----------CcEEEEeCC----------cceEEEEee--cCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 708 --D----------SRIRILDGL----------DIVHKFRGF--RNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 708 --D----------g~I~IwD~~----------~~~~~~~~~--~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
+ ..|.-|... .....+... ........|.|.|||.+.++.+..+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 133334421 112222221 2223457899999998888777544
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=70.46 E-value=1.2e+02 Score=32.39 Aligned_cols=195 Identities=9% Similarity=0.073 Sum_probs=108.8
Q ss_pred CCcEEEEEeCCCcEEEEEC---CC------CcEEE---EeecCCCeEEEEEec--CCCCEEEEEECCCeEEEEeCCC---
Q 002086 564 RSHLLLSSSMDKTVRLWDM---ET------KSCLK---LFAHNDYVTCIQFNP--MDDDYFISGSLDAKVRIWSISD--- 626 (969)
Q Consensus 564 ~~~~L~Sgs~DgtV~IWDl---~t------~~~i~---~~~h~~~V~sv~fsp--~~~~~L~sgs~Dg~I~IWDl~~--- 626 (969)
..+.|+..+..|.++-+.. .. |..+. .+.....|.++...+ .++.+++..+.+|.++-..+..
T Consensus 52 ~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~ 131 (307)
T 1zi0_A 52 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 131 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTT
T ss_pred CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhc
Confidence 3567777788887666554 22 22211 123445566664432 1456899999999999987632
Q ss_pred ----ceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 627 ----RLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 627 ----~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
+.. +.+.. .+.+..+........++..+.+|.+..++...-........-...-.-.....|.++....++ ..
T Consensus 132 ~~r~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~-~~ 209 (307)
T 1zi0_A 132 LRTAGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD-GA 209 (307)
T ss_dssp CCTTCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS-CE
T ss_pred cccCCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC-CE
Confidence 211 11222 355656555556678888999999988887543221100000000011234566666554444 46
Q ss_pred EEEEeCCCcEEEEeCCcce---------EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 702 VLVTSADSRIRILDGLDIV---------HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~---------~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+++.+..|.++-.+..+.. ..+........+..+....+...|+..+.+|.+.-+++..
T Consensus 210 ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 210 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 8888899988887743211 1111122234455544444445566777788877777765
No 357
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=69.11 E-value=1.2e+02 Score=32.10 Aligned_cols=159 Identities=8% Similarity=-0.004 Sum_probs=87.5
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEE----CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCE
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGS----LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs----~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~ 650 (969)
..|+..++...+...+... . +..|++ +++.|+-.. ....|+..++.......+..+.. ..++++++.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 4678888887764443322 1 225667 677777655 34556677776655544444432 456788888
Q ss_pred EEEEeC-CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCcce-EEEEeec
Q 002086 651 ALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLDIV-HKFRGFR 727 (969)
Q Consensus 651 Lasgs~-dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~~~-~~~~~~~ 727 (969)
|+-.+. ...|.+.++......... . .... ..+.|++..++.+...+ ..|..-++.... ..+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l~--------~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt--- 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALFY--------D---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--- 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEEE--------C---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS---
T ss_pred EEEEeCCCceEEEEECCCCCEEEEe--------C---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe---
Confidence 886655 678888888776543221 1 1122 23558774444433232 345555533222 1111
Q ss_pred CCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCC
Q 002086 728 NTSSQISAAFNADGKYIISASE--DSQVYVWKREE 760 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs~--Dg~I~IWdl~t 760 (969)
...+ ..|+|++.+|.-+.. .+.|..-+++.
T Consensus 224 -~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 224 -EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp -CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred -CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 1122 347888888876533 34566666654
No 358
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=66.89 E-value=1.4e+02 Score=31.88 Aligned_cols=191 Identities=12% Similarity=0.113 Sum_probs=113.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCc-------EEEE--eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC---c-----
Q 002086 565 SHLLLSSSMDKTVRLWDMETKS-------CLKL--FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD---R----- 627 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~-------~i~~--~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~---~----- 627 (969)
..++++.+.+|.|+--.+..-. -+.. +.-.+.+..+.... ..+.++..+..|.++-+.... .
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 5678888999999877654321 1111 23345565655555 567788888899877776532 1
Q ss_pred -e----EEEEecCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 628 -L----VVDWTDLHEMVTAACYTP---DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 628 -~----~~~~~~~~~~V~sv~fsp---dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
. .+. +...+.|..+...+ +..+|+..+..|.++...+............. ..... ...+..+.....+
T Consensus 87 G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~-i~L~~-~d~lv~~~~~~~~- 162 (312)
T 1suu_A 87 GQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIV-IKLND-KDFVTSAEIVFKD- 162 (312)
T ss_dssp -CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEEC-BCCCT-TCCEEEEEEECTT-
T ss_pred CcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEE-EecCC-CCEEEEEEEeCCC-
Confidence 1 111 12234455554433 46789999999999998886543221111111 11122 4556666555433
Q ss_pred ceEEEEeCCCcEEEEeCCcc---------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 700 SEVLVTSADSRIRILDGLDI---------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~---------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..++..+.+|.+..+...+. ...+.. .....|..+..-.++..|++.+..|.++..++..-
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 57888999999888874331 111221 12345666666556778889999999999998764
No 359
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=64.13 E-value=49 Score=35.50 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=48.0
Q ss_pred CCcEEEEEeC-CCcEEEEECCC--CcEEEEe--e-cCCCeEEEEEecCCCCEEEEEEC-C---------CeEEEEeCCCc
Q 002086 564 RSHLLLSSSM-DKTVRLWDMET--KSCLKLF--A-HNDYVTCIQFNPMDDDYFISGSL-D---------AKVRIWSISDR 627 (969)
Q Consensus 564 ~~~~L~Sgs~-DgtV~IWDl~t--~~~i~~~--~-h~~~V~sv~fsp~~~~~L~sgs~-D---------g~I~IWDl~~~ 627 (969)
.+.+++.|+. ...+.++|+.+ .+-...- . ....-.+++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 3556666654 35688899874 3333221 1 11111223332 5667777765 2 46899999887
Q ss_pred eEEEEecCC-C--CEEEEEEccCCCEEEEEeCC
Q 002086 628 LVVDWTDLH-E--MVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 628 ~~~~~~~~~-~--~V~sv~fspdg~~Lasgs~d 657 (969)
+-....... . .-.+++. .+++.++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 644433222 1 1122222 567777888754
No 360
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=63.76 E-value=24 Score=41.15 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=84.9
Q ss_pred eEEEEeCCC----c-eEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcee------eeeeeeecccccCC
Q 002086 618 KVRIWSISD----R-LVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLH------QLNQVDFQTKKKSS 685 (969)
Q Consensus 618 ~I~IWDl~~----~-~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~------~~~~~~~~~~~~~h 685 (969)
.|.+.|.+. + .+..+.........+.++|||+++++++ .+.++.++|++..... ..... +.. ...-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~-~~a-e~e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDV-IVG-EPEL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGG-EEE-CCBC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccc-eEe-eccC
Confidence 477888876 2 3455555566677899999999998765 5789999999842110 00000 000 1123
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------------eEEEEeecCCCCeEEEEE------eCCCCEEEEE
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------------VHKFRGFRNTSSQISAAF------NADGKYIISA 747 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------------~~~~~~~~~~~~V~sl~f------spdg~~LaSg 747 (969)
.......+|.++| ..+.+--.|..|.-|++... +.++..+- .+-.+.- .+||++|++.
T Consensus 377 GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y---qpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 377 GLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY---QPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp CSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS---CEEEEEETTTTSTTCCSCEEEEE
T ss_pred CCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc---CCcccccCCCccCCCCccEEEEe
Confidence 4567788999988 55666678999999994432 22222221 1222222 5799999998
Q ss_pred eC---CCcE----------EEEEcCC
Q 002086 748 SE---DSQV----------YVWKREE 760 (969)
Q Consensus 748 s~---Dg~I----------~IWdl~t 760 (969)
.. |..+ .+.|+..
T Consensus 453 nK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 453 SKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp ESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred cccccccCcCCCCCCCCcceeEecCC
Confidence 64 5443 6677754
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=61.87 E-value=1.9e+02 Score=31.73 Aligned_cols=194 Identities=12% Similarity=0.170 Sum_probs=113.1
Q ss_pred CcEEEEEeCCCcEEEEECCC---------CcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeC---CC------
Q 002086 565 SHLLLSSSMDKTVRLWDMET---------KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI---SD------ 626 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t---------~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl---~~------ 626 (969)
..++++.+.+|.|+--.+.. +.....+...+.+..+.... ..+.|+..+..|.++-+.. ..
T Consensus 7 e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~a~ 85 (370)
T 3l6v_A 7 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSNAR 85 (370)
T ss_dssp CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcccC
Confidence 57888999999998764421 22333445566777776665 6677887888888776653 21
Q ss_pred ceEE-EE--ecCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 627 RLVV-DW--TDLHEMVTAACYTP---DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 627 ~~~~-~~--~~~~~~V~sv~fsp---dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
|..+ .+ +.....|.++.... ++.+|+.++..|.++...+..........+ ...... ....+..+.....+ .
T Consensus 86 G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~-~ai~L~-~~d~lv~v~~~~~~-~ 162 (370)
T 3l6v_A 86 GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGK-IAINLD-EGDALVGVALTDGD-R 162 (370)
T ss_dssp CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCE-ESSCCC-TTCCEEEEEEECSC-C
T ss_pred CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCce-EEEEeC-CCCEEEEEEEeCCC-c
Confidence 2111 11 12334565554432 456999999999999988765432111111 011112 23455555554433 5
Q ss_pred eEEEEeCCCcEEEEeCCc---------ceEEEEeecCCCCeEEEEEeC--------------------------------
Q 002086 701 EVLVTSADSRIRILDGLD---------IVHKFRGFRNTSSQISAAFNA-------------------------------- 739 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~---------~~~~~~~~~~~~~V~sl~fsp-------------------------------- 739 (969)
.++..+.+|.+..+...+ ....+. ......|.++...+
T Consensus 163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~-L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~ 241 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIR-LAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVA 241 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEEEECCC------------------------------
T ss_pred eEEEEeCCCeEEEEEccccCccCCCCCCeeeEE-eCCCCEEEEEEEeccccccccccccccccccccccccccccccccc
Confidence 788888888888776322 111111 12233455554443
Q ss_pred ---CCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 740 ---DGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 740 ---dg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
++.+|++.+..|..+...+..-+.
T Consensus 242 ~~~~~~~il~vTe~G~gKrt~~~e~~~ 268 (370)
T 3l6v_A 242 DNGDVAYILTATENGYGKRTPLAEYPR 268 (370)
T ss_dssp -----CEEEEEETTSEEEEEEGGGSCC
T ss_pred cccCCceEEEeeCCCCEEEEEHHHhcc
Confidence 456899999999999999876443
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=61.22 E-value=93 Score=32.61 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=96.7
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEE-EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEe
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWT 633 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~-~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~ 633 (969)
.|..|+......++. . ||.|..|-....-.+. .......|..|+... ...++. . ||.|+.|-.... ++-.-.
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 466666655444444 4 8999999765422111 112234677777753 233333 4 999999986542 211111
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
.....|..++...+ +.++-. +|.|+.|-....-.... + ......|..++.... +.++-. |+.|+.
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~---~-----~~~~~~i~~i~~G~~---~~~~l~-~G~v~~ 163 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV---P-----AEAQSGVTALDGGVY---TALAVK-NGGVIA 163 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC---C-----GGGGSSEEEEEECSS---EEEEEE-TTEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC---C-----ccCCCCeEEEEcccC---EEEEEE-CCEEEE
Confidence 11245777766544 444445 99999997654322111 0 112345777776543 333334 799999
Q ss_pred EeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 714 LDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 714 wD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|-.....+.-........|..++...+. .++. .||.|+.|-....
T Consensus 164 wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 164 WGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp EECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTT
T ss_pred ecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCC
Confidence 9743211100001112346666654433 3333 5999999987653
No 363
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=58.73 E-value=2e+02 Score=34.95 Aligned_cols=161 Identities=13% Similarity=0.156 Sum_probs=82.6
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-------CCCEEEEEEccCC-CEEEEEeCCCc----EE
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-------HEMVTAACYTPDG-QNALIGSHKGS----CR 661 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-------~~~V~sv~fspdg-~~Lasgs~dg~----I~ 661 (969)
...|.+|+++|.+...++++...+.|...+=....-...... ...+.+|+++|.. ..++++..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 468999999996678888888877776655332222222221 2359999999853 44555443311 33
Q ss_pred EEE-cCCCceeeeeeeeecccc-cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE-eCC-cceEEEEee---cCCCCeEE
Q 002086 662 LYS-IEDSKLHQLNQVDFQTKK-KSSTRKITGFQFSPSNPSEVLVTSADSRIRIL-DGL-DIVHKFRGF---RNTSSQIS 734 (969)
Q Consensus 662 IwD-l~~~~~~~~~~~~~~~~~-~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw-D~~-~~~~~~~~~---~~~~~V~s 734 (969)
||- ...++.-......+.... ......+..++++|.++..++++...+.|+.= |.. ......... .....+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEE
Confidence 443 333433222111110000 00111356788888766677777755554432 211 122111100 11245778
Q ss_pred EEEeC-CCCEEEEEeCC-CcEE
Q 002086 735 AAFNA-DGKYIISASED-SQVY 754 (969)
Q Consensus 735 l~fsp-dg~~LaSgs~D-g~I~ 754 (969)
+.++| ++..|+.+..+ +.|+
T Consensus 174 i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 174 VIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEECTTSTTCEEEEESSTTCEE
T ss_pred EEECCCCCCEEEEEEcCCCeEE
Confidence 88888 44556666554 4444
No 364
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=57.09 E-value=2e+02 Score=30.49 Aligned_cols=191 Identities=12% Similarity=0.170 Sum_probs=108.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEE---------EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeC---CC------
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLK---------LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI---SD------ 626 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~---------~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl---~~------ 626 (969)
..++++.+.+|.|+--.+..-+... .+...+.+..+.... ..+.|+..+..|.++-+.. ..
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CEEEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 4578888999999877765432211 122345555555554 5677888888888766654 22
Q ss_pred ceEEE-E--ecCCCCEEEEEEc---cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 627 RLVVD-W--TDLHEMVTAACYT---PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 627 ~~~~~-~--~~~~~~V~sv~fs---pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
|..+. . +.....|..+..- .++.+++..+.+|.++...+........... ........ ..+..+...... .
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~-~~i~l~~~-d~lv~~~~~~~~-~ 158 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK-VAIKLVDG-DELIGVDLTSGE-D 158 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCE-ESSCCCTT-CCEEEEEEECTT-C
T ss_pred CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCe-EEEEECCC-CEEEEEEEeCCC-C
Confidence 22111 1 2233456655442 3566899999999999988764322111110 00111222 555555554433 5
Q ss_pred eEEEEeCCCcEEEEeCCcc---------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 701 EVLVTSADSRIRILDGLDI---------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~~---------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.++..+.+|.+..+...+. ...+. ......|.++....++..|++.+..|.++-.++..
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 7888888998888773321 11111 22334566665555667899999999999988754
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=56.71 E-value=2e+02 Score=30.49 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=105.6
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcEE---E---------EeecCCCeEEEEEecC--CCCEEEEEECCCeEEEEeCCC---
Q 002086 564 RSHLLLSSSMDKTVRLWDMETKSCL---K---------LFAHNDYVTCIQFNPM--DDDYFISGSLDAKVRIWSISD--- 626 (969)
Q Consensus 564 ~~~~L~Sgs~DgtV~IWDl~t~~~i---~---------~~~h~~~V~sv~fsp~--~~~~L~sgs~Dg~I~IWDl~~--- 626 (969)
..+.++..+..|.++-.....-... . .+.....|.++...+. +..+|+..+..|.++...+..
T Consensus 57 ~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~ 136 (312)
T 1suu_A 57 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKA 136 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC
T ss_pred CCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhc
Confidence 3567788888888776655321110 0 1233445555544321 357888899999999888732
Q ss_pred ----ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 627 ----RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 627 ----~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
+.....+...+.+..+.....+..++..+.+|.+..+....-........-...-.-.....|..+....++ ..+
T Consensus 137 ~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~-~~l 215 (312)
T 1suu_A 137 VKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN-PYL 215 (312)
T ss_dssp ----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTC-SEE
T ss_pred cCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCC-CeE
Confidence 222212223455666666555678999999999999988653221100000000001124556666555444 568
Q ss_pred EEEeCCCcEEEEeCCcc---------eEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 703 LVTSADSRIRILDGLDI---------VHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~---------~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
++.+..|........+. ...+... .....+..+....+...|+..+..|.+.-..+.+
T Consensus 216 ~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 216 LIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EEEECCCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 88899999888874332 1111111 1223344333333445555556666555455543
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=53.76 E-value=2.6e+02 Score=30.79 Aligned_cols=143 Identities=11% Similarity=0.172 Sum_probs=82.0
Q ss_pred CeEEEEeCCCc--eEEEEecCC-------CCEEEEEEc---cC----CCEEEEEe-CCCcEEEEEcCCCceeeeeeeeec
Q 002086 617 AKVRIWSISDR--LVVDWTDLH-------EMVTAACYT---PD----GQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 617 g~I~IWDl~~~--~~~~~~~~~-------~~V~sv~fs---pd----g~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
-+|.+||+.++ ++++.+... ..+..+.+. |. +.++.... ..+.|.|||+.+++......-.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36778888888 777654432 346777777 22 33444444 467899999999876544321111
Q ss_pred cc------ccC----CCCCeEEEEEcCC----CCceEEEEeCCC-cEEEEe---CC--cceE--EEEeecC-CCCeEEEE
Q 002086 680 TK------KKS----STRKITGFQFSPS----NPSEVLVTSADS-RIRILD---GL--DIVH--KFRGFRN-TSSQISAA 736 (969)
Q Consensus 680 ~~------~~~----h~~~It~l~fspd----~~~~l~sgs~Dg-~I~IwD---~~--~~~~--~~~~~~~-~~~V~sl~ 736 (969)
.. ..+ -...|..|+++|+ + ..|.-....+ .++--. +. .... ...+... ......++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~-~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGN-RPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSC-CEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCC-eEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 00 000 1357889999997 4 4455544443 344333 11 1111 1122222 13344567
Q ss_pred Ee-CCCCEEEEEeCCCcEEEEEcCC
Q 002086 737 FN-ADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 737 fs-pdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+. .+|.++++--....|..|+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 75 5787788888888999999875
No 367
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.87 E-value=1.6e+02 Score=36.72 Aligned_cols=39 Identities=3% Similarity=0.012 Sum_probs=33.3
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
..+.+++..++..++++-+.|+++|+|++.++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357788888888999999999999999999998876543
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.52 E-value=31 Score=43.27 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=34.4
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..|.+++..++..+|+|-+.|+++|||++.+++++...+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 367888888899999999999999999999999988643
No 369
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=38.69 E-value=5.8e+02 Score=30.47 Aligned_cols=178 Identities=11% Similarity=0.056 Sum_probs=88.0
Q ss_pred CCcEEEEECCCCc--EEEEee--cCCCeEEEEEecCCCC-----EEEEEECC---CeEEEEeCCC--ceEEEEecCCCCE
Q 002086 574 DKTVRLWDMETKS--CLKLFA--HNDYVTCIQFNPMDDD-----YFISGSLD---AKVRIWSISD--RLVVDWTDLHEMV 639 (969)
Q Consensus 574 DgtV~IWDl~t~~--~i~~~~--h~~~V~sv~fsp~~~~-----~L~sgs~D---g~I~IWDl~~--~~~~~~~~~~~~V 639 (969)
-..|+.|.+.+.. -..++. ....-..+..++ ++. .+++.+.+ ..+.+.|... ++...+.......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT 293 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcce
Confidence 3568888887653 233342 222223344455 444 34544422 4466667653 4444443333221
Q ss_pred EEEEEccCCCEEEEE----------eCCCcEEEEEcCCCcee----eeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 640 TAACYTPDGQNALIG----------SHKGSCRLYSIEDSKLH----QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 640 ~sv~fspdg~~Lasg----------s~dg~I~IwDl~~~~~~----~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
+..+.++.+++.. ...+.|.+.++.+.... ......+ .......+..+.+..+ .++++.
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~--~l~~~~ 366 (711)
T 4hvt_A 294 --LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF---TPTANEVFNFISTTKD--RVFLAT 366 (711)
T ss_dssp --EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE---CCCTTEEEEEEEECSS--CEEEEE
T ss_pred --EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE---CCCCCCeEEEEEEECC--EEEEEE
Confidence 2334455554422 24677888888764210 0000000 0223446778888875 477777
Q ss_pred eCCCc--EEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCC-EEEEEeC---CCcEEEEEcC
Q 002086 706 SADSR--IRILDGLDI---VHKFRGFRNTSSQISAAFNADGK-YIISASE---DSQVYVWKRE 759 (969)
Q Consensus 706 s~Dg~--I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~-~LaSgs~---Dg~I~IWdl~ 759 (969)
..++. |++++.... ...+........+....+++++. ++++.+. -+.++.+|+.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77765 666664322 12201122224455566667664 4455443 2567777775
No 370
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=37.08 E-value=6.2e+02 Score=30.35 Aligned_cols=160 Identities=9% Similarity=0.052 Sum_probs=78.0
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec------------CCCCEEEEEEccC-CCEEEEEeCC-
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD------------LHEMVTAACYTPD-GQNALIGSHK- 657 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~------------~~~~V~sv~fspd-g~~Lasgs~d- 657 (969)
+-.+.|.+|+++|.+.+.++++...|.|...+=....-..... ....+.+++++|. ...++++...
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 3567899999999666788888776766544422222111111 1235899999983 3444443321
Q ss_pred ----CcEEEEEc-CCCceeeeeeeeeccccc-CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe-CCcceEEEEeec---
Q 002086 658 ----GSCRLYSI-EDSKLHQLNQVDFQTKKK-SSTRKITGFQFSPSNPSEVLVTSADSRIRILD-GLDIVHKFRGFR--- 727 (969)
Q Consensus 658 ----g~I~IwDl-~~~~~~~~~~~~~~~~~~-~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD-~~~~~~~~~~~~--- 727 (969)
....||-. ..++.-............ ........++++|.++..++++...+.|+.=+ ....-.......
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~~~ 177 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSS 177 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCCCS
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCcccC
Confidence 12334433 333322211111100000 00111246889987767777777665544322 111111111111
Q ss_pred -CCCCeEEEEEeCC-CCEEEEEeCCC
Q 002086 728 -NTSSQISAAFNAD-GKYIISASEDS 751 (969)
Q Consensus 728 -~~~~V~sl~fspd-g~~LaSgs~Dg 751 (969)
....+..+.++|. ...|+.+..++
T Consensus 178 ~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 178 TYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCccceEEEEECCCCCCEEEEEEeCC
Confidence 1134678888874 34455555555
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.57 E-value=4.5e+02 Score=28.62 Aligned_cols=206 Identities=10% Similarity=0.076 Sum_probs=110.5
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEEC---CC------CcEEE---EeecCCCeEEEEEec--CCCCEEEEEECCCeE
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDM---ET------KSCLK---LFAHNDYVTCIQFNP--MDDDYFISGSLDAKV 619 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl---~t------~~~i~---~~~h~~~V~sv~fsp--~~~~~L~sgs~Dg~I 619 (969)
+.+..+.... .+.|+..+..|.++-+.. .. |..+. .+.....|.++.... ..+.+|+.++..|.+
T Consensus 46 D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~v 125 (370)
T 3l6v_A 46 DFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTV 125 (370)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeE
Confidence 4444444443 566777777777665543 21 22211 123445666665432 135689999999999
Q ss_pred EEEeCCC-------ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEE
Q 002086 620 RIWSISD-------RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692 (969)
Q Consensus 620 ~IWDl~~-------~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l 692 (969)
+...+.. +.....+...+.+..+........++..+.+|.+..++...-........-...-.-.....|.++
T Consensus 126 Krt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~ 205 (370)
T 3l6v_A 126 KKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSL 205 (370)
T ss_dssp EEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEE
T ss_pred EEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEE
Confidence 9988632 211111222345555555556678888999999888876543221100000000001223445555
Q ss_pred EEcCC----------------------------------CCceEEEEeCCCcEEEEeCCcc---------eEEEEeecCC
Q 002086 693 QFSPS----------------------------------NPSEVLVTSADSRIRILDGLDI---------VHKFRGFRNT 729 (969)
Q Consensus 693 ~fspd----------------------------------~~~~l~sgs~Dg~I~IwD~~~~---------~~~~~~~~~~ 729 (969)
...+. ....+++.+..|..+.....+. ...+......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~ 285 (370)
T 3l6v_A 206 IVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN 285 (370)
T ss_dssp EEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTT
T ss_pred EEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCC
Confidence 44431 2257888899998888773321 1222222223
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+..+.+..+...|+..+..|.+.-..+..
T Consensus 286 g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 286 GKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred CcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 4455554444555666677778777777654
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=30.64 E-value=5.4e+02 Score=27.75 Aligned_cols=197 Identities=11% Similarity=0.092 Sum_probs=107.1
Q ss_pred CEEEEEecC-CcEEEEEeCCCcEEEEECCCC---------cE--EEEee--cCCCeEEEEEecCCCCEEEEEECCCeEEE
Q 002086 556 DVLDLSWSR-SHLLLSSSMDKTVRLWDMETK---------SC--LKLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRI 621 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~---------~~--i~~~~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~I 621 (969)
.+..++.+. ....+.-..||.|+.|-.... .. ...+. ....|..|+. ...+.++...||.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEE
Confidence 344455554 566677788999999965321 11 11111 1235777766 3566777778999999
Q ss_pred EeCCCc------------eEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-----eeeeeeeccccc
Q 002086 622 WSISDR------------LVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH-----QLNQVDFQTKKK 683 (969)
Q Consensus 622 WDl~~~------------~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~-----~~~~~~~~~~~~ 683 (969)
|-.... .+..... ....|..++......+.++-..+|.|+.|-....-.+ .....+... ..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v-~~ 261 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI-DS 261 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC-GG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe-cc
Confidence 975321 1111111 1234666666543456777788999999965421110 000000000 01
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----------ceEEEEeec--CCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----------IVHKFRGFR--NTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----------~~~~~~~~~--~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
.....|..++... .+.++-..+|.|+.|-... ......... ....|..++. ...+.+.-..||
T Consensus 262 ~~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G 336 (389)
T 3kci_A 262 LTGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDG 336 (389)
T ss_dssp GTTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTC
T ss_pred cCCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCC
Confidence 1223566666644 4566668899999996321 111111111 1223555544 334555667899
Q ss_pred cEEEEEcCCC
Q 002086 752 QVYVWKREEH 761 (969)
Q Consensus 752 ~I~IWdl~t~ 761 (969)
.|+.|=....
T Consensus 337 ~v~~wG~n~~ 346 (389)
T 3kci_A 337 EVYTWGDNDE 346 (389)
T ss_dssp CEEEEECCTT
T ss_pred CEEEeeCCCC
Confidence 9999998764
No 373
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=30.14 E-value=6.6e+02 Score=29.91 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=61.3
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-------CCCEEEEEEccC-CCEEEEEeCC-------CcE
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-------HEMVTAACYTPD-GQNALIGSHK-------GSC 660 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-------~~~V~sv~fspd-g~~Lasgs~d-------g~I 660 (969)
.|..|+++|.+.+.++++...+.|..++-....-..+... ...|.+|+++|. .+.++++... +..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 8999999996667787777677776665433332222221 135899999983 3444444321 124
Q ss_pred EEEEcCC-Cceeeeeeeeecccc-cCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 661 RLYSIED-SKLHQLNQVDFQTKK-KSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 661 ~IwDl~~-~~~~~~~~~~~~~~~-~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
.||...+ ++.-......+.... ......+..|+++|.++..++++...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 4554433 332211111110000 00012346799999887788887743
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.47 E-value=33 Score=43.92 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=32.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
.|.+++..++..+|+|-+.|+++|||++.+++++....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677888999999999999999999999988644
No 375
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=27.26 E-value=8.5e+02 Score=28.92 Aligned_cols=102 Identities=12% Similarity=0.056 Sum_probs=56.3
Q ss_pred CCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ec-------CCCeEEEEEecCCCCEEEEEECC-------C
Q 002086 555 DDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AH-------NDYVTCIQFNPMDDDYFISGSLD-------A 617 (969)
Q Consensus 555 ~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h-------~~~V~sv~fsp~~~~~L~sgs~D-------g 617 (969)
+.|..|+++| ...++.+...+.|..++-. ++....+ .+ ...|.+|+++|.+.+.++++... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 3789999998 3567777767776666533 3333332 21 24599999998555555555421 1
Q ss_pred eEEEEeCC-Cce---EEEEecC-------CCCEEEEEEccCC-CEEEEEeCC
Q 002086 618 KVRIWSIS-DRL---VVDWTDL-------HEMVTAACYTPDG-QNALIGSHK 657 (969)
Q Consensus 618 ~I~IWDl~-~~~---~~~~~~~-------~~~V~sv~fspdg-~~Lasgs~d 657 (969)
...||--. .++ .+..... ...+..|+++|.. ..|+++...
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 23444433 332 2221100 0124678998853 566666533
No 376
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=26.04 E-value=7.3e+02 Score=27.77 Aligned_cols=29 Identities=10% Similarity=-0.073 Sum_probs=21.9
Q ss_pred cCEEEEEEeCCCC-EEEEEeCCCcEEEEec
Q 002086 452 GSIWTIKFSLDAR-FLASAGEDRVIHVWEV 480 (969)
Q Consensus 452 ~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl 480 (969)
..-+.|+|.|||. .|+.+...|.|++++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 4568999999996 3444567899998864
No 377
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.87 E-value=71 Score=38.38 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=30.3
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..|.++.+ +..+|+|-+.|+++|+|++.+++++....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 45666655 47799999999999999999999887644
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.56 E-value=2.2e+02 Score=36.16 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=29.2
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCC
Q 002086 731 SQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766 (969)
Q Consensus 731 ~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t 766 (969)
.+.+++..++..+|++-+.|++++||++.+++++.+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 445566778889999999999999999999765443
No 379
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=23.91 E-value=7e+02 Score=26.81 Aligned_cols=197 Identities=10% Similarity=0.129 Sum_probs=104.3
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCCC--------c--EE-EEee--cCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETK--------S--CL-KLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~--------~--~i-~~~~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
|..|+.. ....+.-..||.|..|-.... . .. ..+. ....+..+++.. ...+.+.-..||.|+.|-
T Consensus 55 i~~i~~G-~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG-EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE-TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC-CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEe
Confidence 4444432 356666678999999965321 1 11 1111 223455566665 567777788999999996
Q ss_pred CCCc------------eEEEEecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee----eeeeeeecccccCCC
Q 002086 624 ISDR------------LVVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH----QLNQVDFQTKKKSST 686 (969)
Q Consensus 624 l~~~------------~~~~~~~~~-~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~----~~~~~~~~~~~~~h~ 686 (969)
.... .+....... ..|..|+.. ..+.++-..+|.|+.|-....-.+ ...............
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 5321 111111111 245555543 456666778999999975331100 000000000011233
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----------ceEEEEeec--CCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLD----------IVHKFRGFR--NTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----------~~~~~~~~~--~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
..|..++..... .+.++-..|+.|+.|-... ......... ....|..++.. ..+.+.-..||.|+
T Consensus 211 ~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~ 287 (389)
T 3kci_A 211 HRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVY 287 (389)
T ss_dssp SCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred CeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEE
Confidence 467777765422 4667778899999996221 111111111 12235555544 33455557899999
Q ss_pred EEEcCC
Q 002086 755 VWKREE 760 (969)
Q Consensus 755 IWdl~t 760 (969)
.|-...
T Consensus 288 ~wG~n~ 293 (389)
T 3kci_A 288 TWGKGD 293 (389)
T ss_dssp EEECCG
T ss_pred EEeCCC
Confidence 998765
No 380
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=21.62 E-value=1.1e+03 Score=28.24 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=81.5
Q ss_pred CCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-e-------cCCCeEEEEEecCCCCEEEEEECCCe----E
Q 002086 554 LDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-A-------HNDYVTCIQFNPMDDDYFISGSLDAK----V 619 (969)
Q Consensus 554 ~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~-------h~~~V~sv~fsp~~~~~L~sgs~Dg~----I 619 (969)
.+.|.+|.++| ...++.+...+.|...+= .++....+ . ....|.+|++.|.+.+.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 46899999998 467777777777765553 34444333 2 13469999999844455655543311 2
Q ss_pred EEE-eCCCceEEEEecC--------C--CCEEEEEEccC-CCEEEEEeCCCcEEEEEcC-CCceeeeeeeeecccccCCC
Q 002086 620 RIW-SISDRLVVDWTDL--------H--EMVTAACYTPD-GQNALIGSHKGSCRLYSIE-DSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 620 ~IW-Dl~~~~~~~~~~~--------~--~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~ 686 (969)
.|| ....++--..... . ..+..++++|. ...++++...+. ||-.. .++.-..... .. ......
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~-~~-~~~~~~ 168 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTS-IP-DAFTNG 168 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETT-SC-CCCSTT
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCcc-Cc-cccCCC
Confidence 233 3333432222111 0 13556888875 345666654443 33333 2322111100 00 000112
Q ss_pred CCeEEEEEcCCCCceEEEEeCC-CcEEE
Q 002086 687 RKITGFQFSPSNPSEVLVTSAD-SRIRI 713 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~D-g~I~I 713 (969)
..+..+.++|.++..++++..+ +.|+.
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred CCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence 5678899999766677777665 44443
No 381
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.12 E-value=7e+02 Score=25.40 Aligned_cols=151 Identities=9% Similarity=-0.013 Sum_probs=83.2
Q ss_pred CEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc-ccC
Q 002086 608 DYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK-KKS 684 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~-~~~ 684 (969)
..+++.+.+|.|+--....-. .+. +...+.+..+........|+..+..|.++-+....-.........+... .-.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~-lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLN-YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSC-CCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceecc-CCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 355667788888765543311 111 1223445555555555677888888987766553321000000001011 112
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-------eEEEEeecCCCCeEEEEEe-CCCCEEEEEeCCCcEEEE
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-------VHKFRGFRNTSSQISAAFN-ADGKYIISASEDSQVYVW 756 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-------~~~~~~~~~~~~V~sl~fs-pdg~~LaSgs~Dg~I~IW 756 (969)
....|..+....++ .+|+.++..|.++.....+. ...+.. .....+..+... .++..|+..+.+|.+..+
T Consensus 82 ~~e~Iv~~~~~~~~-~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 PGATVDHMLMESDD-QKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PENAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TTCCEEEEECCCTT-CEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-CTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEEeCCC-CEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-CCCCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 34567776443333 57888999999998874322 111111 223345555555 355688899999999999
Q ss_pred EcCCC
Q 002086 757 KREEH 761 (969)
Q Consensus 757 dl~t~ 761 (969)
.+.+-
T Consensus 160 ~~~ei 164 (256)
T 1zvt_A 160 PVSDL 164 (256)
T ss_dssp EGGGS
T ss_pred EHHHC
Confidence 98763
Done!