Query 002087
Match_columns 969
No_of_seqs 169 out of 825
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jqo_A Phosphoenolpyruvate car 100.0 9E-261 3E-265 2336.4 95.7 959 6-969 9-970 (970)
2 1jqn_A Pepcase, PEPC, phosphoe 100.0 1E-249 3E-254 2230.9 90.5 877 28-969 4-883 (883)
3 3odm_A Pepcase, PEPC, phosphoe 100.0 5.9E-65 2E-69 580.4 18.5 319 521-873 136-500 (560)
4 1e0t_A Pyruvate kinase, PK; ph 93.5 0.14 4.8E-06 59.4 8.4 98 514-633 178-276 (470)
5 3gr4_A Pyruvate kinase isozyme 91.6 0.26 9E-06 58.0 7.5 97 515-633 249-345 (550)
6 1a3w_A Pyruvate kinase; allost 91.5 0.13 4.5E-06 60.1 4.7 97 515-633 200-296 (500)
7 1sgj_A Citrate lyase, beta sub 91.1 0.1 3.5E-06 56.5 3.2 101 524-639 93-195 (284)
8 1dxe_A 2-dehydro-3-deoxy-galac 90.8 0.13 4.4E-06 54.9 3.6 107 514-634 84-216 (256)
9 3qtg_A Pyruvate kinase, PK; TI 90.5 0.34 1.2E-05 55.9 6.9 90 525-633 197-286 (461)
10 3khd_A Pyruvate kinase; malari 89.5 0.38 1.3E-05 56.2 6.4 87 528-633 234-320 (520)
11 3hqn_D Pyruvate kinase, PK; TI 89.5 0.38 1.3E-05 56.1 6.2 97 515-633 199-295 (499)
12 3qll_A Citrate lyase; beta bar 89.3 0.24 8.1E-06 54.7 4.2 105 517-636 123-227 (316)
13 3gg8_A Pyruvate kinase; malari 88.6 0.46 1.6E-05 55.5 6.1 90 525-633 222-311 (511)
14 3r4i_A Citrate lyase; TIM beta 88.1 0.79 2.7E-05 51.0 7.4 105 524-641 110-229 (339)
15 3qqw_A Putative citrate lyase; 88.1 0.42 1.4E-05 53.0 5.2 101 524-637 111-226 (332)
16 2v5j_A 2,4-dihydroxyhept-2-ENE 86.5 0.71 2.4E-05 50.1 5.7 105 516-634 106-237 (287)
17 3qz6_A HPCH/HPAI aldolase; str 86.1 0.35 1.2E-05 51.9 3.0 98 526-634 90-214 (261)
18 3t05_A Pyruvate kinase, PK; te 86.0 0.85 2.9E-05 54.4 6.4 106 503-633 191-296 (606)
19 2e28_A Pyruvate kinase, PK; al 84.8 0.92 3.1E-05 54.0 6.0 90 526-633 188-277 (587)
20 1izc_A Macrophomate synthase i 83.5 0.35 1.2E-05 53.9 1.6 93 527-631 120-250 (339)
21 1u5h_A CITE; TIM barrel, struc 77.7 1.7 5.8E-05 46.7 4.5 86 525-631 85-177 (273)
22 2vws_A YFAU, 2-keto-3-deoxy su 76.8 0.77 2.6E-05 49.2 1.5 106 515-634 84-216 (267)
23 3oyz_A Malate synthase; TIM ba 66.6 3.4 0.00012 47.3 3.8 121 505-631 92-227 (433)
24 4drs_A Pyruvate kinase; glycol 53.5 22 0.00076 41.7 7.6 92 525-633 230-326 (526)
25 1fa2_A Beta-amylase; TIM barre 40.2 14 0.00047 42.8 2.9 50 588-643 46-102 (498)
26 1wdp_A Beta-amylase; (beta/alp 39.6 14 0.00049 42.7 3.0 50 588-643 45-101 (495)
27 2xfr_A Beta-amylase; hydrolase 37.1 16 0.00056 42.4 3.0 49 589-643 44-99 (535)
28 2xz9_A Phosphoenolpyruvate-pro 30.0 67 0.0023 35.2 6.3 147 526-696 137-305 (324)
29 4eys_A MCCC family protein; MC 21.0 40 0.0014 37.3 2.4 23 577-601 93-115 (346)
30 3cuz_A MSA, malate synthase A; 21.0 69 0.0024 37.6 4.4 95 526-631 208-325 (532)
31 2ols_A Phosphoenolpyruvate syn 20.1 95 0.0033 38.2 5.6 94 527-633 643-751 (794)
No 1
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Probab=100.00 E-value=9e-261 Score=2336.36 Aligned_cols=959 Identities=77% Similarity=1.216 Sum_probs=843.8
Q ss_pred hhhhhhchHHHHhhccCCCCCCchhhhHHHHHHHHHHH-HHHHHhcChhHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 002087 6 NLEKMASIDAQLRLLVPRKVSEDDKLIEYDALLLDRFL-DILQDLHGEDLKETVQECYELAAEYEGKNDPSKFKELGNVL 84 (969)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~~ll-~vl~e~~G~~~~~~ve~iR~la~~~~~~~~~~~~~~L~~~l 84 (969)
-.++|+++|++++++++++++.. .+|++|+++||.++ +||++++|+++|++||++|.+++.+++.+++...++|.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-~~Lr~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~ls~~~~r~~~~~~~~~l~~~l 87 (970)
T 1jqo_A 9 PGEKHHSIDAQLRQLVPGKVSED-DKLIEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKL 87 (970)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred hHHHHHhhhHHhhcccCCCCCcc-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Confidence 35789999999999999999996 58999999999988 99999999999999999999999874433556788999999
Q ss_pred cCCChhhHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHhhhc-CCCcccCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhh
Q 002087 85 TSLDPGDSIVIAKAFSHMLNLANLAEELQIAHRRRIKKLKK-GDFADENSATTESDIEETFKRLVGELNKSPEEIFDALK 163 (969)
Q Consensus 85 ~~L~~~~~~~vaRAFs~yf~L~NiAEe~~r~r~~R~~~~~~-~~~~~~~~~~~~gs~~~~l~~L~~~~g~~~e~i~~~L~ 163 (969)
.+|+++++..|+||||+||+|+|||||+|++|++|. .... ++..+.+..+.+|||..++.+|+++.|+++++|+++|+
T Consensus 88 ~~L~~~~~~~v~RAFs~~~~L~NiAEe~~~~r~~r~-~~~~~~~~~~~~~~~~~~sl~~~~~~L~~~~g~~~~~i~~~L~ 166 (970)
T 1jqo_A 88 TGLAPADAILVASSILHMLNLANLAEEVQIAHRRRN-SKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALK 166 (970)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-----------------CHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcccccccccCCCcchHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 999999999999999999999999999999988775 2222 33322222346799999999984588999999999999
Q ss_pred cCceeEeeccCCCcchhhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcchhhhccCCChHHHHHHHHH
Q 002087 164 NQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMS 243 (969)
Q Consensus 164 ~~~i~pVlTAHPTEa~RrtvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~gl~ 243 (969)
++.|+|||||||||++|||||+||++|+++|.++++.++++.|+++++++|+++|++||||||||+.||||.||++|||+
T Consensus 167 ~~~v~pVlTAHPTE~~RrTvl~k~~~I~~lL~~l~~~~lt~~e~~~~~~~L~~~I~~lW~TdeiR~~kPtv~DE~~~gl~ 246 (970)
T 1jqo_A 167 NQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMS 246 (970)
T ss_dssp TCEEEEEEECCTTCCSCHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHH
T ss_pred cCceeeeeccCCccccHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhCChhhhccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002087 244 YFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDL 323 (969)
Q Consensus 244 y~~~sl~~avP~~~~~l~~al~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L 323 (969)
||++|||++||.+|++++++|.+++.+..+|...++|+|||||||||||||||||+||++|+.++|++|+++|++++++|
T Consensus 247 y~~~sl~~avP~~~r~l~~al~~~~~~~~l~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L 326 (970)
T 1jqo_A 247 YIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEEL 326 (970)
T ss_dssp HHTTTTTTTHHHHHHHHHHHHHTTTCCSCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988753344564556699999999999999999999999999999999999999999999
Q ss_pred HhhccCccCCHHHHHhHHHhhhhhhhhh-hhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCC
Q 002087 324 MFEMSMWRCSDELRHRADVLHRSSKKDA-KHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVF 402 (969)
Q Consensus 324 ~~~LS~~~~s~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y 402 (969)
+++||+++||++|++.++...+.+++.. ++|..++..++++||||++|..|++||.+|..++...+.+.....+....|
T Consensus 327 ~~eLS~s~~s~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPYR~~L~~i~~rL~~T~~~~~~~l~~~~~~~~~~~~Y 406 (970)
T 1jqo_A 327 MFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSF 406 (970)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHHHHCCCCCTTCSSSCSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCSTTSC
T ss_pred HHHcCCCCCCHHHHHHHHHHHhhcccchhcccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCC
Confidence 9999999999999987766443333221 344445455678999999999999999999987765443322111123479
Q ss_pred CChHHhhhHHHHHHHHHHhcCCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 002087 403 TNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKR 482 (969)
Q Consensus 403 ~~~~ell~dL~~i~~SL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~~Y~~l~E~~r 482 (969)
.+++||++||.+|++||++||+..+|+|.|.+|||+|++|||||++|||||||++|++|++||++++|+++|.+|||++|
T Consensus 407 ~~~~ell~dL~~i~~SL~~~g~~~iA~g~L~~lir~V~~FGfhLa~LDiRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r 486 (970)
T 1jqo_A 407 TSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKR 486 (970)
T ss_dssp CSHHHHHHHHHHHHHHHHHTSCCTTTTTHHHHHHHHHHHHTTSSSEEEEECCHHHHHHHHHHHHHHHTSCCSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhhhhhHHHHHHHHHHhCeeccccchhhcchHHHHHHHHHHHHcCCCCcccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccC
Q 002087 483 QEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFE 562 (969)
Q Consensus 483 ~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFE 562 (969)
++||.+||+++|||+++..++|++++++|+||++++++|+++|++||||||+++||||+|++|+|++|+.++|+||||||
T Consensus 487 ~~~L~~eL~~~rpL~~~~~~~s~~~~evL~~f~~i~~~g~~a~~~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VVPLFE 566 (970)
T 1jqo_A 487 QEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFE 566 (970)
T ss_dssp HHHHHHHHHCCSCCCCTTCCCCHHHHHHHHHHHHHHHSCSTTEEEEEETTCCSTHHHHHHHHHHHHTCCSSCCCEEEEEC
T ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhChhhhCeEEeCCCCCHHHHHHHHHHHHHcCCCCCCCeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCC
Q 002087 563 KLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVG 642 (969)
Q Consensus 563 Ti~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvg 642 (969)
|++||+||+.||++||++|+||+|++++|||||||||||||||+++|+|+||+||++|+++|++|||+++||||||||||
T Consensus 567 Ti~DL~~a~~im~~ll~~p~yr~~l~~~QeVMLGYSDS~KD~G~laA~w~ly~Aq~~L~~v~~~~gV~l~lFHGRGGsvg 646 (970)
T 1jqo_A 567 RLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVG 646 (970)
T ss_dssp SHHHHHTHHHHHHHHHTCHHHHHHHTSEEEEEEESTTHHHHSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGG
T ss_pred CHHHHHhHHHHHHHHHhChHHHHhhCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhcCCCCcccCceeeecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHH
Q 002087 643 RGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATE 722 (969)
Q Consensus 643 RGGGPt~~ailaqP~gsv~g~irvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~ 722 (969)
|||||+|+||+||||||++|.||+|||||||++|||+|++|.||||++++|++++++.+++.++++|+++|++||+.|++
T Consensus 647 RGGgp~~~ailaqP~gsv~G~ir~TeQGEvI~~kYg~p~~a~~nLe~~~aA~l~a~l~~~~~~~~~~~~~m~~la~~s~~ 726 (970)
T 1jqo_A 647 RGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATE 726 (970)
T ss_dssp GTCCCHHHHHHTSCTTSCTTEEEEEEEHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHcCCCcccCCceEEEeecHHHHHhcCChHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876666778999999999999999
Q ss_pred HHHHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCc
Q 002087 723 EYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDI 802 (969)
Q Consensus 723 aYr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~ 802 (969)
+||++||++|+|++||+++||+.||+.|||||||+||+++++++|||||||||||||+|++||||||+|+||+.++++++
T Consensus 727 ~Yr~lv~~~p~Fv~yF~~aTP~~ei~~LnIGSRPa~R~~~~~i~~LRAIPWvfsWtQ~R~~lP~w~G~GsAl~~~~~~~~ 806 (970)
T 1jqo_A 727 EYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDV 806 (970)
T ss_dssp HHHHHHTTCTTHHHHHHHHSCCGGGGGGCCSCCC--------CTTCCSHHHHHHHHHTTCCHHHHTTHHHHHHHHHHHCT
T ss_pred HHHHHHhcCCCHHHHHHHhChHHHHHhCccCCCCccCCCCCCcccccccchhhHHHhccCCcchhhhHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999887
Q ss_pred CcHHHHHHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCch
Q 002087 803 RNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPY 882 (969)
Q Consensus 803 ~~~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~ 882 (969)
++++.|++||++||||+++|||++|+|+|+|+.||++|+++++|++++.||+.|++||++|+++|++|||+++||+++|+
T Consensus 807 ~~l~~L~~my~~wPfF~t~ldn~eM~laK~Dl~iA~~Y~~ll~d~~~~~i~~~i~~E~~~T~~~ll~itg~~~LL~~~p~ 886 (970)
T 1jqo_A 807 RNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPF 886 (970)
T ss_dssp THHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCSTTHHHHHHHHHHHHHHHHHHHHHHTCSSTTSSCHH
T ss_pred hhHHHHHHHHHhChHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccChH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCCCcccCcchhhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHH
Q 002087 883 LKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIA 962 (969)
Q Consensus 883 l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lllTIngIA 962 (969)
|++||++|||||||||++||+||||+|+.+...+..|+.++++.+ + ++..||+++|+...+++.++++|++||||||
T Consensus 887 l~~si~lR~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~~lllTInGIA 963 (970)
T 1jqo_A 887 LKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEFAD--E-NKPAGLVKLNPASEYPPGLEDTLILTMKGIA 963 (970)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCSCC----------CTTTTTSSSCSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHhhHHHHHHHHHHHHHHhcCCCCCccccccccccc--c-cchhhhhccCcccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999733111112333333222 1 2334999999999999999999999999999
Q ss_pred hhhccCC
Q 002087 963 AGLQNTG 969 (969)
Q Consensus 963 AGlrNTG 969 (969)
|||||||
T Consensus 964 AGlrNTG 970 (970)
T 1jqo_A 964 AGMQNTG 970 (970)
T ss_dssp HHHTCCC
T ss_pred HhcccCC
Confidence 9999999
No 2
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Probab=100.00 E-value=9.9e-250 Score=2230.92 Aligned_cols=877 Identities=42% Similarity=0.728 Sum_probs=818.8
Q ss_pred chhhhHHHHHHHHHHH-HHHHHhcChhHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHcCCChhhHHHHHHHHHHHhhhh
Q 002087 28 DDKLIEYDALLLDRFL-DILQDLHGEDLKETVQECYELAAEYEGKNDPSKFKELGNVLTSLDPGDSIVIAKAFSHMLNLA 106 (969)
Q Consensus 28 ~~~~l~~~~~ll~~ll-~vl~e~~G~~~~~~ve~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~yf~L~ 106 (969)
.+.+|++|+++||.+| +||++++|+++|++||++|.++++.+.+ +++..++|.+.+.+|+++++..|+||||+||+|+
T Consensus 4 ~~~~l~~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~l~~~~r~~-~~~~~~~l~~~l~~l~~~~~~~v~rAFs~~~~L~ 82 (883)
T 1jqn_A 4 QYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAG-NDANRQELLTTLQNLSNDELLPVARAFSQFLNLA 82 (883)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3568999999999988 9999999999999999999999998754 4566789999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCcccCCCCCcccHHHHHHHHHHhc-CCCHHHHHHHhhcCceeEeeccCCCcchhhhHHH
Q 002087 107 NLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGEL-NKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQ 185 (969)
Q Consensus 107 NiAEe~~r~r~~R~~~~~~~~~~~~~~~~~~gs~~~~l~~L~~~~-g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrtvL~ 185 (969)
|||||+|++|++|. . + +.+|||..++.+| +++ |+++++|++.|+++.|+|||||||||++|||||+
T Consensus 83 NiAE~~~~~r~~~~-~---~--------~~~~sl~~~~~~l-~~~~g~~~~~i~~~L~~~~i~pVlTAHPTE~~Rrtvl~ 149 (883)
T 1jqn_A 83 NTAEQYHSISPKGE-A---A--------SNPEVIARTLRKL-KNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIH 149 (883)
T ss_dssp HHHHHHHHHCTTTT-C---T--------TCTHHHHHHHHHH-HTCTTCCHHHHHHHHHTCCEEEEECCCTTCCBSSCCHH
T ss_pred HHHHHHHHHHHHhh-c---C--------CCCccHHHHHHHH-HHhcCCCHHHHHHHHhcCeeeeeeccCCccchHHHHHH
Confidence 99999999866543 1 1 3569999999999 788 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcchhhhccCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002087 186 KHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALK 265 (969)
Q Consensus 186 ~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~gl~y~~~sl~~avP~~~~~l~~al~ 265 (969)
|+++|+++|.++++.++++.|++++.++|+++|++|||||+||..||||.||++||++||++|||++||.+|++++++|.
T Consensus 150 ~~~~I~~lL~~~~~~~l~~~e~~~~~~~L~~~I~~lW~T~eiR~~kPtv~DE~~~gl~y~~~sl~~avP~~~~~l~~~l~ 229 (883)
T 1jqn_A 150 KMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLE 229 (883)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHCCCBCSSCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhCcchhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCHHHHHhHHHhhh
Q 002087 266 NIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHR 345 (969)
Q Consensus 266 ~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~~~~s~~l~~~~~~~~~ 345 (969)
+.+. ..+|...+||+|||||||||||||||||+||++|+.++|++|+++|++++++|.++||+++||++|.+.++.
T Consensus 230 ~~~~-~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~~~~s~~l~~~~~~--- 305 (883)
T 1jqn_A 230 ENLG-YKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELLALVGE--- 305 (883)
T ss_dssp HHTS-CCCCTTCCCEEEEECTTTBCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCT---
T ss_pred HhcC-CCCCCCCCccccCCcCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh---
Confidence 8743 344545678999999999999999999999999999999999999999999999999999999999875432
Q ss_pred hhhhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCChHHhhhHHHHHHHHHHhcCCc
Q 002087 346 SSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSCGDR 425 (969)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~~~~~ 425 (969)
.+++||||++|..|++||.+|..++.....+.. ..+.+..|.+++||++||..|++||++||+.
T Consensus 306 ---------------~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~-~~~~~~~y~~~~ell~dL~~i~~SL~~~g~~ 369 (883)
T 1jqn_A 306 ---------------EGAAEPYRYLMKNLRSRLMATQAWLEARLKGEE-LPKPEGLLTQNEELWEPLYACYQSLQACGMG 369 (883)
T ss_dssp ---------------TSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCSSCCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------hcCCCcHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCcccCCCCHHHHHHHHHHHHHHHHHCCCh
Confidence 146899999999999999999987665443210 1112335999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCCCCCCCCCH
Q 002087 426 AIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTE 505 (969)
Q Consensus 426 ~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~ 505 (969)
.+|+|.|.+|||+|++|||||++|||||||++|++|++||++++|+++|.+|||++|++||.+||+++|||.+++.++|+
T Consensus 370 ~ia~~~L~~lir~v~~FGfhLa~LDiRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~ 449 (883)
T 1jqn_A 370 IIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSA 449 (883)
T ss_dssp HHHTTHHHHHHHHHHHTTTTSSEEEEEEEHHHHHHHHHHHHHHHTSCCGGGSCHHHHHHHHHHHHHCSSCCSCSSCCCCH
T ss_pred hhHHhHHHHHHHHHHhhCcccCCccccccchHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHh
Q 002087 506 EIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRN 585 (969)
Q Consensus 506 ~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~ 585 (969)
+++++|+||++++++++++|++||||||+++||||+|++|+|++|+..+|+|||||||++||+||+.||++||++|+||+
T Consensus 450 ~~~~~L~~f~~i~~~~~~a~~~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~ 529 (883)
T 1jqn_A 450 ETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRG 529 (883)
T ss_dssp HHHHHHHHHHHHHHSCTTSEEEEEEETCCSHHHHHHHHHHHHTTTCCSCCCEEEEECSHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCeEEeCCCCCHHHHHHHHHHHHHhCCCCCcCeeCCCCCHHHHHhHHHHHHHHHhChHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred hccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhhhhhcCCCCcccCcee
Q 002087 586 RINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLR 665 (969)
Q Consensus 586 ~l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt~~ailaqP~gsv~g~ir 665 (969)
|++++|||||||||||||||+++|+|+||+||++|+++|++|||+++|||||||||||||||+|+||+||||||++|++|
T Consensus 530 ~l~~~qeVMlGYSDS~KD~G~laA~w~ly~Aq~~L~~v~~~~gV~l~lFhGRGGsvgRGGgp~~~ailaqp~gsv~g~~r 609 (883)
T 1jqn_A 530 LIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLR 609 (883)
T ss_dssp HTTTEEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECSSTGGGSCHHHHHHHHHTSCTTTTTTCEE
T ss_pred hhCCeEEEEEeeccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCchHHHHHhCCCCCcCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhhCchh
Q 002087 666 VTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPEL 745 (969)
Q Consensus 666 vTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~aYr~lv~~~p~F~~yF~~aTPi~ 745 (969)
+|||||||++|||+|++|.+|||++++|++++++.+++.|+++|+++|++||+.|+++||++|+++|+|++||+++||+.
T Consensus 610 ~TeQGEvI~~kY~~p~~a~~nLe~~~~A~l~~~~~~~~~~~~~~~~~m~~la~~s~~~Yr~lv~~~p~fv~yf~~~tP~~ 689 (883)
T 1jqn_A 610 VTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQ 689 (883)
T ss_dssp EEECGGGHHHHHSSHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSCHH
T ss_pred EEecchHHHHhcCChHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhChHH
Confidence 99999999999999999999999999999999988666678899999999999999999999999999999999999999
Q ss_pred HhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCcCcHHHHHHHHhhCchHHHHHHHH
Q 002087 746 EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLV 825 (969)
Q Consensus 746 ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn~ 825 (969)
||+.|||||||+||+++++++|||||||||||||+|+++|||||+|+||+.+++++ .++.|++||++||||+++|||+
T Consensus 690 ei~~L~IGSRPa~R~~~~~i~~LRAIPwvfsW~Q~R~~lP~w~G~GsAl~~~~~~~--~~~~L~~my~~wpfFrt~l~n~ 767 (883)
T 1jqn_A 690 ELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDG--KQSELEAMCRDWPFFSTRLGML 767 (883)
T ss_dssp HHHHSSCSSCC------CCGGGSCHHHHHHHHHHTTCCGGGTTTHHHHHHHHHTTT--CHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhccccCCccccCCCCCccccccchhhhHHHHhccCchhhhhHHHHHHHHHhcC--hHHHHHHHHHhChHHHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999876 5999999999999999999999
Q ss_pred HHHHHhccHHHHHHH-HhccCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCchHHHHHHhhhhhhhhhHHHHHHH
Q 002087 826 EMVFAKGNHKIAALY-DQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYT 904 (969)
Q Consensus 826 em~LaKaD~~Ia~~Y-~~l~~d~~~~~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvel 904 (969)
+|+|+|+|+.||++| +.||.| ++++||+.|++||++|+++|++|||+++||+++|++++||++|||||||||++||+|
T Consensus 768 em~laK~Dl~iA~~Y~~~Lv~~-~~~~i~~~i~~E~~~T~~~ll~itg~~~Ll~~~p~l~~si~~R~pyv~pLn~lQvel 846 (883)
T 1jqn_A 768 EMVFAKADLWLAEYYDQRLVDK-ALWPLGKELRNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAEL 846 (883)
T ss_dssp HHHHHHCCHHHHHHHHHHHSCT-TTHHHHHHHHHHHHHHHHHHHHHTTCSSTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHhCCccccccChHHHHHHHhhhHHhhHHHHHHHHH
Confidence 999999999999999 777766 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccCcchhhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHHhhhccCC
Q 002087 905 LKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQNTG 969 (969)
Q Consensus 905 L~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lllTIngIAAGlrNTG 969 (969)
|||+|+.+. . ..++.+.++++|++|||||||||||||
T Consensus 847 L~r~R~~~~-------------~---------------~~~~~~~l~~~l~lTinGIAaGlRNTG 883 (883)
T 1jqn_A 847 LHRSRQAEK-------------E---------------GQEPDPRVEQALMVTIAGIAAGMRNTG 883 (883)
T ss_dssp HHHHHHHHH-------------H---------------TCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhcCC-------------C---------------cccccHHHHHHHHHHHHHHHHHhccCC
Confidence 999995210 0 000136799999999999999999999
No 3
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=100.00 E-value=5.9e-65 Score=580.37 Aligned_cols=319 Identities=19% Similarity=0.202 Sum_probs=267.1
Q ss_pred CCCchhhHHhhcCCChhhHHHHHHHHHH-c-------CC---CCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhc--
Q 002087 521 PADNFGAYIISMATAPSDVLAVELLQRE-C-------HV---KQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRI-- 587 (969)
Q Consensus 521 ~~~a~~~yIISmt~sasDvL~V~lL~ke-~-------Gl---~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l-- 587 (969)
+.++|+.||||||+|+||||+|++|+|+ + |. .++|+|||||||++||.||++||+++|++ ||+ +
T Consensus 136 g~~aI~~yIISMT~sasDlL~V~~L~k~~aGL~~~e~g~~~~~~~i~VVPLFETieDL~~a~~Il~~ll~~--~r~-l~~ 212 (560)
T 3odm_A 136 GTPAISEVVVPMIETGKEISEFQDRVNSVVDMGNKNYKTKLDLNSVRIIPLVEDVPALANIDRILDEHYEI--EKS-KGH 212 (560)
T ss_dssp SSCSCCEEEESSCCSHHHHHHHHHHHHHHHHHHHHHCSSCCCTTSSEEEEEECCHHHHHTTHHHHHHHHHH--HHH-TTC
T ss_pred CCcccCeEEecCCCCHHHHHHHHHHHHHHhcccccccCCCCCCCCCCeECCcCCHHHHHhhHHHHHHHHHH--HHH-hcc
Confidence 6789999999999999999999999965 3 33 36899999999999999999999999996 777 6
Q ss_pred -cCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhh--hhhcCCCCcccCce
Q 002087 588 -NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHL--AILSQPPDTIHGSL 664 (969)
Q Consensus 588 -~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt~~--ailaqP~gsv~g~i 664 (969)
++.|||||||||||||||++||+|+||+||++|+++|+++||+++|||||||||||||||++. +|++||||+ +
T Consensus 213 ~~~~QeVMLGYSDSaKDgG~laS~waly~Aq~~L~~~~~e~gI~l~lFHGRGGtvgRGGgp~~~a~aiLaQppG~----~ 288 (560)
T 3odm_A 213 ILKDLRIMIARSDTAMSYGLISGVLSVLMAVDGAYKWGEKHGVTISPILGCGSLPFRGHFSEENIDEILATYSGI----K 288 (560)
T ss_dssp CCSEEEEEEESHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECCSSGGGTCCCTTCHHHHHHHTTTC----C
T ss_pred cCCeEEEEEeeccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeeCCCCCcCCCCCHHHHHHHHhCCCCC----c
Confidence 579999999999999999999999999999999999999999999999999999999999984 599999999 7
Q ss_pred eeecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCCCC-C---ChhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHh
Q 002087 665 RVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPIS-P---KPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRL 740 (969)
Q Consensus 665 rvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~-~---~~~~~~~m~~ls~~s~~aYr~lv~~~p~F~~yF~~ 740 (969)
++|||| +.||+.|. +.+++|+.+.+..+++. | +.+|+++|+.+++.|+++||++|.+.++|+.||+.
T Consensus 289 tvTeQg---a~KYd~p~------~~y~~AI~~a~~~~p~~~P~~~~~e~~e~m~~la~~s~~~YR~~V~~~ad~I~~~a~ 359 (560)
T 3odm_A 289 TFTFQS---ALRYDHGE------EATKHAVRELKEKIAQSKPRNFSEEDKDLMKEFIGICSKHYLQTFLKVIDTVSFVSD 359 (560)
T ss_dssp EEEECH---HHHHTTCH------HHHHHHHHHHHHHGGGCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEeeec---hhhcCCCH------HHHHHHHHHHHhCCCCcCccccchHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 899999 99999999 88999999988765444 4 35899999999999999999999999999999999
Q ss_pred hCchhHhhhCCCC-----CCCCcc-------------------C-CCCCCCCccccchhhhhhhhcccccchhhHHHHHH
Q 002087 741 ATPELEYGRMNIG-----SRPSKR-------------------K-PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFK 795 (969)
Q Consensus 741 aTPi~ei~~lnIG-----SRPakR-------------------~-~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~ 795 (969)
+||..+.+.|+|| ||=.-- . ...++.=-|||.++.|| -+=-+-|...|+|++|+
T Consensus 360 ~tP~rR~RkLhiG~lfGYsR~~~~~~~~~~~~~d~v~~~e~~~~~~~~~~~lPRAI~Ft~al-YSiGlPPelig~~~~l~ 438 (560)
T 3odm_A 360 FIPKNRDRLTKAKTGLEYNREVANLDNVADLVKDEVLKQEILSIDNSKEYAVPRAISFTGAM-YTLGMPPELMGMGRALN 438 (560)
T ss_dssp TSCCCSCBCC------------CCHHHHHTTCCCHHHHHHHHCSCCCSCCCCCCHHHHHHHH-HHTTCCGGGTTHHHHHH
T ss_pred hCChhhhccccccccccccccCCCccccccccccchhhhhhhcccccccccCCchhhhhHHH-HhcCCChHHhcchhhHH
Confidence 9999999999999 764321 0 01125567999999999 67778899999999998
Q ss_pred HHHHhC-cCcHHHHHHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 002087 796 HVIQKD-IRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGH 873 (969)
Q Consensus 796 ~~~~~~-~~~~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~~i~~~I~~E~~~T~~~vl~itg~ 873 (969)
.+.++= .+.++.|.+.|.. .|.|+..+..|.+.-.-.. -+.+.+.++++..++.+.++.|-
T Consensus 439 ~~k~~l~~~~ld~l~~~yp~---------------l~~Dl~~a~~y~~~~~~~~--~l~~~~~~~v~eDi~~~~~~~~i 500 (560)
T 3odm_A 439 EIKTKYGQEGIDKLLEIYPI---------------LRKDLAFAARFANGGVSKK--IIDEEARQEYKEDMKYVNEILNL 500 (560)
T ss_dssp HHHHHHCHHHHHHHHHHSTT---------------HHHHHHHHHTTCCTTTTTT--TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhcCHHHHHHHHHHhhh---------------HHHHHHHHHHhcCHHHHHH--hcCHHHHHHHHHHHHHHHHHhCC
Confidence 776321 1247788877776 6889999998876422221 23455667777777888888875
No 4
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=93.47 E-value=0.14 Score=59.35 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=82.1
Q ss_pred HHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHc-CCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeE
Q 002087 514 FHVIAELPADNFGAYIISMATAPSDVLAVELLQREC-HVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQE 592 (969)
Q Consensus 514 f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~-Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~Qe 592 (969)
++.+.+.+.+. .++||.+++.|+.++.-+.++. |- .+.|++..||.+.++|.++|++. . + -
T Consensus 178 i~~~l~~gvD~---I~lsfV~saeDv~~~~~~l~~~~~~--~i~IiakIEt~eav~nldeI~~~--s---------D--g 239 (470)
T 1e0t_A 178 LIFGCEQGVDF---VAASFIRKRSDVIEIREHLKAHGGE--NIHIISKIENQEGLNNFDEILEA--S---------D--G 239 (470)
T ss_dssp HHHHHHHTCSE---EEESSCCSHHHHHHHHHHHHTTTCT--TCEEEEEECSHHHHHTHHHHHHH--S---------S--E
T ss_pred HHHHHHcCCCE---EEECCCCCHHHHHHHHHHHHHhcCC--CceEEEEECCHHHHHhHHHHHHH--C---------C--E
Confidence 34444555544 5899999999999998888877 64 68899999999999999999976 1 1 6
Q ss_pred EEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 593 VMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 593 VMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
||+|-.|=+.+-|. ..+..+|+++...|+++|+.+..
T Consensus 240 ImVargDLgveig~----e~v~~~qk~ii~~araaGkpvI~ 276 (470)
T 1e0t_A 240 IMVARGDLGVEIPV----EEVIFAQKMMIEKCIRARKVVIT 276 (470)
T ss_dssp EEEEHHHHHHHSCH----HHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEECchHhhhhcCH----HHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999885 56999999999999999998654
No 5
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=91.64 E-value=0.26 Score=57.96 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=80.9
Q ss_pred HHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEE
Q 002087 515 HVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVM 594 (969)
Q Consensus 515 ~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVM 594 (969)
+...+.+.+.+ .+|+.++++||.++--+.++.| ..+.|++-.||.+.++|.++|++.. =-||
T Consensus 249 ~f~~~~~vD~i---a~SfVr~a~Dv~~~r~~L~~~g--~~i~IIAKIE~~eav~nldeIl~~s-------------DgIm 310 (550)
T 3gr4_A 249 KFGVEQDVDMV---FASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGVRRFDEILEAS-------------DGIM 310 (550)
T ss_dssp HHHHHTTCSEE---EETTCCSHHHHHHHHHHHTTTT--TTSEEEEEECSHHHHHTHHHHHHHS-------------SEEE
T ss_pred HHHHHcCCCEE---EecCCCCHHHHHHHHHHHHhcC--CCceEEEEeCCHHHHHHHHHHHHhC-------------CEEE
Confidence 34445555544 4799999999999998888877 3789999999999999999999971 2699
Q ss_pred EeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 595 IGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 595 lGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
+|-.|=+-+-|. ..+..+|+++...|+++|..+..
T Consensus 311 VaRGDLgvei~~----e~vp~~Qk~iI~~c~~agkpVi~ 345 (550)
T 3gr4_A 311 VARGDLGIEIPA----EKVFLAQKMMIGRCNRAGKPVIC 345 (550)
T ss_dssp EEHHHHHHHSCG----GGHHHHHHHHHHHHHHHTCCEEE
T ss_pred EccchhcccCCH----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 999998877776 46899999999999999988764
No 6
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=91.46 E-value=0.13 Score=60.07 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=80.8
Q ss_pred HHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEE
Q 002087 515 HVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVM 594 (969)
Q Consensus 515 ~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVM 594 (969)
+.+.+.+.+ ..++||.+++.|+.++.-+..++| ..+.|++..||.+.++|.++|++. . --||
T Consensus 200 ~~~l~~g~d---~I~lpfV~saeDv~~~~~~l~~~~--~~i~IiakIEt~eav~nldeI~~~--~-----------DgIm 261 (500)
T 1a3w_A 200 RFGVKNGVH---MVFASFIRTANDVLTIREVLGEQG--KDVKIIVKIENQQGVNNFDEILKV--T-----------DGVM 261 (500)
T ss_dssp HHHHHHTCS---EEEECSCCSHHHHHHHHHHHHHHH--TTSEEEEEECSSHHHHSHHHHHHH--S-----------SEEE
T ss_pred HHHHHcCCC---EEEECCCCCHHHHHHHHHHHHhcC--CCcEEEEEECChHHHHhHHHHHHh--C-----------CEEE
Confidence 334444444 458999999999999988877776 368899999999999999999976 1 1799
Q ss_pred EeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 595 IGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 595 lGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
+|-.|=+.+-|. ..+..+|+++...|+++|+.+..
T Consensus 262 vgrgDLgvelg~----~~v~~aqk~ii~aaraaGkpvi~ 296 (500)
T 1a3w_A 262 VARGDLGIEIPA----PEVLAVQKKLIAKSNLAGKPVIC 296 (500)
T ss_dssp ECHHHHHHHTTG----GGHHHHHHHHHHHHHHHTCCEEE
T ss_pred ECchHhhhhcCc----HHHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999883 56889999999999999999874
No 7
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=91.09 E-value=0.1 Score=56.46 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=78.6
Q ss_pred chhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcc
Q 002087 524 NFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKD 603 (969)
Q Consensus 524 a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KD 603 (969)
.+...+++|++++.|+-.+.-+.++.| ..+.|+|+.||...+.|+++|.. ..+..-+|+|-.|=+.+
T Consensus 93 g~~~i~lPkv~s~~~v~~~~~~l~~~g--~~~~i~~~IEt~~av~~~~eIa~-----------~~~vd~l~iG~~DL~~~ 159 (284)
T 1sgj_A 93 ELSGVVVPKLEMGAEARQVAQMLQERS--LPLPILAGLETGAGVWNAREIME-----------VPEVAWAYFGAEDYTTD 159 (284)
T ss_dssp TSSEEEECSCCSHHHHHHHHHHHHHTT--CCCCEEEEECSHHHHHTHHHHHT-----------STTEEEEEECHHHHHHH
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCHHHHHHHHHHHc-----------CCCCcEEEECHHHHHHH
Confidence 355689999999999999988888876 36889999999999999988872 13567789998877766
Q ss_pred hhHH--hHHHHHHHHHHHHHHHHHHhCCeEEEecCCCC
Q 002087 604 AGRF--SAAWQLYKAQEELIKVAKQYGIKLTMFHGRGG 639 (969)
Q Consensus 604 gG~l--as~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGG 639 (969)
-|.- ...-.+..++.+++..|+++|+.+ ++|=-|
T Consensus 160 lg~~~~~~~~~~~~a~~~iv~aa~a~G~~~--i~~v~~ 195 (284)
T 1sgj_A 160 LGGKRTPGGLEVLYARSQVALAARLTGVAA--LDIVVT 195 (284)
T ss_dssp HTCCCCSSCGGGHHHHHHHHHHHHHHTCEE--EECCCC
T ss_pred hCCCCCCChHHHHHHHHHHHHHHHHcCCCe--eeCCcC
Confidence 6631 111357789999999999999986 444333
No 8
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=90.81 E-value=0.13 Score=54.89 Aligned_cols=107 Identities=13% Similarity=0.194 Sum_probs=80.2
Q ss_pred HHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHc--CC----------------------CCCCccccccCChHHHhc
Q 002087 514 FHVIAELPADNFGAYIISMATAPSDVLAVELLQREC--HV----------------------KQPLRVVPLFEKLADLEA 569 (969)
Q Consensus 514 f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~--Gl----------------------~~~l~VvPLFETi~DL~~ 569 (969)
++.+.+.+.+ ..+++|.+++.|+-++.-.++.. |. ...+.|+++.||...+.|
T Consensus 84 i~~~l~~g~~---gI~~P~V~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g~~~~~~~~~~~~~~v~~~IEt~~av~~ 160 (256)
T 1dxe_A 84 IKRLLDIGFY---NFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDN 160 (256)
T ss_dssp HHHHHHTTCC---EEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHT
T ss_pred HHHHHhcCCc---eeeecCcCCHHHHHHHHHHhcCCCCCccCCCcchhhhhcCchHHHHHhcCcccEEEEEECCHHHHHh
Confidence 3444445543 37899999999998887766531 11 135789999999999999
Q ss_pred HHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHhH--HHHHHHHHHHHHHHHHHhCCeEEEe
Q 002087 570 APAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSA--AWQLYKAQEELIKVAKQYGIKLTMF 634 (969)
Q Consensus 570 a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~las--~W~Ly~Aq~~L~~va~~~gV~l~~F 634 (969)
+++|.. . .+.--+|+|-.|=+.+-|.... .=++..++++++..|+++|+.+..|
T Consensus 161 ~~eIa~----~-------~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~a~G~~~~v~ 216 (256)
T 1dxe_A 161 VDAIAA----T-------EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGIL 216 (256)
T ss_dssp HHHHHT----S-------TTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHhC----C-------CCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCceEEe
Confidence 999984 1 3566799999888777775421 2258899999999999999998664
No 9
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=90.49 E-value=0.34 Score=55.89 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=78.9
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcch
Q 002087 525 FGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDA 604 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDg 604 (969)
+.-..+|+.++++||.++--+.++.|- .+.|+.-.||.+.++|.++|++.. --||+|-.|=+-+-
T Consensus 197 vD~Ia~SfVr~a~Dv~~~r~~l~~~g~--~~~iiaKIE~~eav~nldeIl~~s-------------DgImVaRGDLgvei 261 (461)
T 3qtg_A 197 IDYVAISLAKSCKDVDSVRSLLTELGF--QSQVAVKIETKGAVNNLEELVQCS-------------DYVVVARGDLGLHY 261 (461)
T ss_dssp CCEEEECSCCSHHHHHHHHHHHHHTTC--CCEEEEEECSHHHHHTHHHHHHTC-------------SEEEEEHHHHTTTS
T ss_pred CCEEEecCCCCHHHHHHHHHHHHhcCC--CceEEEEECCHHHHHhHHHHHHhc-------------ccEEEccccccccC
Confidence 334578999999999999999988885 589999999999999999999861 36999999988888
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 605 GRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 605 G~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
|. ..+..+|+++...|+++|..+..
T Consensus 262 ~~----e~v~~~Qk~ii~~~~~~gkpvi~ 286 (461)
T 3qtg_A 262 GL----DALPIVQRRIVHTSLKYGKPIAV 286 (461)
T ss_dssp CT----TTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CH----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 74 48999999999999999988876
No 10
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=89.54 E-value=0.38 Score=56.25 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=76.5
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHH
Q 002087 528 YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRF 607 (969)
Q Consensus 528 yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 607 (969)
..+|+.++++||.++--+.++.| ..+.|++-.||.+.++|.++|++.- --||+|--|=+-+-|.
T Consensus 234 Ia~SFVr~a~Dv~~~r~~l~~~g--~~i~IIAKIE~~eav~nldeIl~~s-------------DGIMVARGDLgvEi~~- 297 (520)
T 3khd_A 234 IAASFIQSADDVRLIRNLLGPRG--RHIKIIPKIENIEGIIHFDKILAES-------------DGIMIARGDLGMEISP- 297 (520)
T ss_dssp EEETTCCSHHHHHHHHHHHTTTT--TTSEEEEEECSHHHHHTHHHHHHHS-------------SCEEECHHHHTTTSCG-
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhHHHHHHhC-------------CcEEEccccccccCCH-
Confidence 45799999999999998888877 3789999999999999999999862 2599999998888876
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 608 SAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 608 as~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
..+..+|+++...|+++|..+..
T Consensus 298 ---e~vp~~Qk~iI~~c~~aGKPVi~ 320 (520)
T 3khd_A 298 ---EKVFLAQKLMISKCNLQGKPIIT 320 (520)
T ss_dssp ---GGHHHHHHHHHHHHHHHTCCEEE
T ss_pred ---HHHHHHHHHHHHHHHHcCCCeEE
Confidence 38999999999999999988763
No 11
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=89.48 E-value=0.38 Score=56.11 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=80.4
Q ss_pred HHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEE
Q 002087 515 HVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVM 594 (969)
Q Consensus 515 ~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVM 594 (969)
+...+.+.+ -..+|+.++++||.++--+.++.| ..+.|++-.||.+.++|.++|++.. --||
T Consensus 199 ~~~~~~~vD---~i~~sfVr~a~dv~~~r~~l~~~~--~~i~IiaKIE~~eav~nldeIl~~s-------------DgIm 260 (499)
T 3hqn_D 199 QFGVEQGVD---MIFASFIRSAEQVGDVRKALGPKG--RDIMIICKIENHQGVQNIDSIIEES-------------DGIM 260 (499)
T ss_dssp HHHHHTTCS---EEEETTCCSHHHHHHHHHHHCGGG--TTSEEEEEECSHHHHHTHHHHHHHS-------------SEEE
T ss_pred HHHHHcCCC---EEEecCCCCHHHHHHHHHHHHhcC--CCCeEEEEECCHHHHHhHHHHHHhC-------------CcEE
Confidence 344445444 456899999999999988887766 3789999999999999999999971 2699
Q ss_pred EeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 595 IGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 595 lGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
+|-.|=+-+-|. ..+..+|+++...|+++|..+..
T Consensus 261 VaRGDLgvEi~~----e~vp~~Qk~iI~~c~~agkpVi~ 295 (499)
T 3hqn_D 261 VARGDLGVEIPA----EKVVVAQKILISKCNVAGKPVIC 295 (499)
T ss_dssp EEHHHHHHHSCH----HHHHHHHHHHHHHHHHHTCCEEE
T ss_pred EccccccCcCCH----HHHHHHHHHHHHHHHHcCCCeEE
Confidence 999887777773 58999999999999999988776
No 12
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=89.26 E-value=0.24 Score=54.66 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=79.8
Q ss_pred HHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEe
Q 002087 517 IAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIG 596 (969)
Q Consensus 517 i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlG 596 (969)
+...+. .+..+++.|++++.|+-.+.-+.+.++ ..+.|+|+.||...+.|+.+|.. ...+..-+++|
T Consensus 123 ~l~~g~-~~~gIvlPKvesa~~v~~~~~~l~~~~--~~~~l~~~IET~~gv~~~~eIa~----------a~~~v~~l~~G 189 (316)
T 3qll_A 123 LLECGS-LPDYLVLPKTESAAHLQILDRLMMFAG--SDTRLIGIIESVRGLNAVESIAA----------ATPKLAGLIFG 189 (316)
T ss_dssp HHHSCC-CCSEEEETTCCSHHHHHHHHHHTSCC----CCEEEEEECSHHHHHTHHHHHT----------SCTTEEEEEEC
T ss_pred HHhCCC-CCCEEEeCCCCCHHHHHHHHHHHHhcC--CCCEEEEEEcCHHHHHHHHHHHh----------cCCCceEEEEC
Confidence 344443 245679999999999988877665443 36789999999999999999875 12367789999
Q ss_pred eccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecC
Q 002087 597 YSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHG 636 (969)
Q Consensus 597 YSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHG 636 (969)
-.|=..|-|.-...=.+..|..+++..|+.+|+.+ ++|
T Consensus 190 ~~DL~~~lG~~~~~~~l~~ar~~iv~AaraaGi~~--id~ 227 (316)
T 3qll_A 190 AADMAADIGAASTWEPLALARARLVSACAMNGIPA--IDA 227 (316)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHHHHHHHTCCE--EEC
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCce--eec
Confidence 99888887765444456678889999999999986 544
No 13
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=88.60 E-value=0.46 Score=55.54 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=77.0
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcch
Q 002087 525 FGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDA 604 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDg 604 (969)
+.-..+|+.++++||.++--+.++.|- .+.|+.-.||.+.++|.++|++.- --||+|-.|=+-+-
T Consensus 222 vD~Ia~SFVr~a~Dv~~~r~~l~~~~~--~~~iiaKIE~~eav~nldeIl~~s-------------DgimVaRGDLgvei 286 (511)
T 3gg8_A 222 CNFIAASFVQSADDVRYIRGLLGPRGR--HIRIIPKIENVEGLVNFDEILAEA-------------DGIMIARGDLGMEI 286 (511)
T ss_dssp CCEEEETTCCSHHHHHHHHHHHTGGGT--TCEEEEEECSHHHHHTHHHHHHHC-------------SCEEEEHHHHHHHS
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhcCC--CCeEEEEECCHHHHHhHHHHHHhC-------------CeEEEecchhcCcC
Confidence 334567999999999999998888874 788999999999999999999872 25999988866666
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 605 GRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 605 G~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
| -..+..+|+++...|+++|..+..
T Consensus 287 ~----~e~v~~~qk~ii~~~~~~gkpvi~ 311 (511)
T 3gg8_A 287 P----PEKVFLAQKMMIAKCNVVGKPVIT 311 (511)
T ss_dssp C----HHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred C----HHHHHHHHHHHHHHHHHcCCCeEE
Confidence 6 368999999999999999988765
No 14
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=88.10 E-value=0.79 Score=50.99 Aligned_cols=105 Identities=17% Similarity=0.154 Sum_probs=79.2
Q ss_pred chhhHHhhcCCChhhHHHHHHHHH----HcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeecc
Q 002087 524 NFGAYIISMATAPSDVLAVELLQR----ECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSD 599 (969)
Q Consensus 524 a~~~yIISmt~sasDvL~V~lL~k----e~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSD 599 (969)
.+...++.|++++.||-.+..+.+ +.|+...+.|+|+.||...+.|+.+|.. . .+..-+++|-.|
T Consensus 110 g~~~I~LPKves~~dv~~~~~~l~~~e~~~G~~~~~~l~~~IET~~gv~~~~eIAa----~-------~rv~~L~~G~~D 178 (339)
T 3r4i_A 110 APAYITLPKIRHVHDAAEMVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAA----L-------PGVEALSFGLMD 178 (339)
T ss_dssp CCSCEEECC-CCHHHHHHHHHHHHHHHHHTTCSSCCCEEEEECSHHHHHTHHHHHT----C-------TTEEEEEECHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeccHHHHHhHHHHHc----C-------cCCCEEEECHHH
Confidence 345679999999999988765554 4577667899999999999999999883 2 367789999888
Q ss_pred CCcchhH--------HhHHHH---HHHHHHHHHHHHHHhCCeEEEecCCCCCC
Q 002087 600 SGKDAGR--------FSAAWQ---LYKAQEELIKVAKQYGIKLTMFHGRGGTV 641 (969)
Q Consensus 600 S~KDgG~--------las~W~---Ly~Aq~~L~~va~~~gV~l~~FHGRGGsv 641 (969)
=..|-|. ....|. +..|...++..|+.+|+.. ++|==+-+
T Consensus 179 L~~~lg~~~~~~~~~~~~~~~~p~~~~a~~~iv~AAraaGi~~--id~v~~d~ 229 (339)
T 3r4i_A 179 FVSAHDGAIPDTAMRSPGQFDHPLVRRAKLEISAACHAYGKVP--SHNVSTEV 229 (339)
T ss_dssp HHHTTTTSSCGGGGSTTHHHHSHHHHHHHHHHHHHHHHTTCEE--EECCCCCS
T ss_pred HHHHhCCCcCccccCCCccccCHHHHHHHHHHHHHHHHcCCCC--ccCCCcCC
Confidence 7776553 133443 6788889999999999975 56544444
No 15
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha}
Probab=88.07 E-value=0.42 Score=53.00 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=76.6
Q ss_pred chhhHHhhcCCChhhHHHHHHHHH----HcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeecc
Q 002087 524 NFGAYIISMATAPSDVLAVELLQR----ECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSD 599 (969)
Q Consensus 524 a~~~yIISmt~sasDvL~V~lL~k----e~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSD 599 (969)
.+...++.|++++.||-.+.-+.+ ..|+...+.|+|+.||...+.|+.+|.. . .+..-+++|-.|
T Consensus 111 g~dgI~LPKvesa~dv~~~~~~l~~~e~~~G~~~~i~l~~~IET~~gv~~~~eIaa----~-------~rv~~L~~G~~D 179 (332)
T 3qqw_A 111 RLAYITVPKATNSGQVAEVIRYIGDVAKRAGLDKPVPVHVLIETHGALRDVFQIAE----L-------PNIEVLDFGLMD 179 (332)
T ss_dssp CCCCEEECCCCSHHHHHHHHHHHHHHHHHTTCSSCCCEEEEECSHHHHHTHHHHTT----S-------TTEEEEEECHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEecCHHHHHHHHHHhc----C-------cCCCEEEEcHHH
Confidence 344579999999999988765554 4577667999999999999999998873 2 357789999888
Q ss_pred CCcchhHH--------hHHH---HHHHHHHHHHHHHHHhCCeEEEecCC
Q 002087 600 SGKDAGRF--------SAAW---QLYKAQEELIKVAKQYGIKLTMFHGR 637 (969)
Q Consensus 600 S~KDgG~l--------as~W---~Ly~Aq~~L~~va~~~gV~l~~FHGR 637 (969)
=..|-|.- ...| .+..|..+++..|+.+|+.. ++|=
T Consensus 180 L~~~lg~~~~~~~~~~~g~~~~p~l~~ar~~vv~AAraaGi~~--id~v 226 (332)
T 3qqw_A 180 FVSGHHGAIPAAAMRSPGQFEHALLVRAKADMVAAALANGIVP--AHNV 226 (332)
T ss_dssp HHHTTTTCSCGGGGSTTGGGTSHHHHHHHHHHHHHHHHTTCEE--EECC
T ss_pred HHHHhCCCccccccCCCCcccCHHHHHHHHHHHHHHHHhCCCc--ccCC
Confidence 77664431 1123 26778889999999999985 5653
No 16
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=86.48 E-value=0.71 Score=50.15 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=78.0
Q ss_pred HHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHc--C---C--------------------CCCCccccccCChHHHhcH
Q 002087 516 VIAELPADNFGAYIISMATAPSDVLAVELLQREC--H---V--------------------KQPLRVVPLFEKLADLEAA 570 (969)
Q Consensus 516 ~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~--G---l--------------------~~~l~VvPLFETi~DL~~a 570 (969)
.+.+.+.+ ..+++|.+++.|+-++.-.+|.. | + ...+.|+++.||.+.+.|+
T Consensus 106 ~~ld~ga~---~ImlP~V~saeea~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~~y~~~~~~~~~vi~mIEt~~av~n~ 182 (287)
T 2v5j_A 106 QLLDVGTQ---TLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNL 182 (287)
T ss_dssp HHHHTTCC---EEEESCCCSHHHHHHHHHHTSCTTTSCCCGGGTTTGGGTTTTSTTHHHHHHHHCEEEEEECSHHHHHTH
T ss_pred HHHhCCCC---EEEeCCCCCHHHHHHHHHHhccCccCccccccchhhhhhccchhhhHhhcCCCcEEEEEECcHHHHHHH
Confidence 33344443 56899999999988887665421 1 1 0137799999999999999
Q ss_pred HHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHhH--HHHHHHHHHHHHHHHHHhCCeEEEe
Q 002087 571 PAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSA--AWQLYKAQEELIKVAKQYGIKLTMF 634 (969)
Q Consensus 571 ~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~las--~W~Ly~Aq~~L~~va~~~gV~l~~F 634 (969)
++|.. . .+.--||+|-.|=+.+-|.... .=++..|+++++..|+++|+.+.+|
T Consensus 183 deIaa----~-------~~vD~l~iG~~DLs~~lg~~~~~~~p~v~~a~~~iv~aaraaG~~~gv~ 237 (287)
T 2v5j_A 183 PQILD----V-------EGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAPGIL 237 (287)
T ss_dssp HHHHT----S-------TTEEEEEECHHHHHHHTTSTTCCCSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhC----c-------CCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHcCCeeEEe
Confidence 99973 2 3567899999988887775321 2357889999999999999998654
No 17
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=86.12 E-value=0.35 Score=51.86 Aligned_cols=98 Identities=18% Similarity=0.302 Sum_probs=76.9
Q ss_pred hhHHhhcCCChhhHHHHHHHHHHc---------------CC----------CCCCccccccCChHHHhcHHHHHHHHhhc
Q 002087 526 GAYIISMATAPSDVLAVELLQREC---------------HV----------KQPLRVVPLFEKLADLEAAPAALARLFSV 580 (969)
Q Consensus 526 ~~yIISmt~sasDvL~V~lL~ke~---------------Gl----------~~~l~VvPLFETi~DL~~a~~im~~ll~~ 580 (969)
...+++|++++.|+-++.-.+|.. |. ...+.|+++.||...+.|+++|.. .
T Consensus 90 ~gI~lP~v~saed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~~~~~v~~mIEt~~av~~~~eIaa----~ 165 (261)
T 3qz6_A 90 EGFMIPGVQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERNDEIFIMAQIEHVKAVEDIDSILA----V 165 (261)
T ss_dssp CEEEETTCCSHHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHHTTCEEEEEECCHHHHHTHHHHHT----S
T ss_pred CEEEECCcCCHHHHHHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCCCCeEEEEEECCHHHHHHHHHHhC----C
Confidence 346899999999999988776531 11 136789999999999999999983 1
Q ss_pred HHHHhhccCeeEEEEeeccCCcchhHHhH--HHHHHHHHHHHHHHHHHhCCeEEEe
Q 002087 581 DWYRNRINGKQEVMIGYSDSGKDAGRFSA--AWQLYKAQEELIKVAKQYGIKLTMF 634 (969)
Q Consensus 581 p~yr~~l~~~QeVMlGYSDS~KDgG~las--~W~Ly~Aq~~L~~va~~~gV~l~~F 634 (969)
.+.--+|+|-.|=+.+-|.... .=++..++++++..|+++|+.+-++
T Consensus 166 -------~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~aaG~~~g~~ 214 (261)
T 3qz6_A 166 -------QGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVYRAADRQGVVKGFF 214 (261)
T ss_dssp -------TTCCEEEECHHHHHHHTTCTTCTTCHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred -------CCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 2567799999888777775421 2368899999999999999999776
No 18
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=85.96 E-value=0.85 Score=54.42 Aligned_cols=106 Identities=22% Similarity=0.264 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHH
Q 002087 503 KTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDW 582 (969)
Q Consensus 503 ~s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~ 582 (969)
+|+.-.+-|. ...+.+-+. ..+|+.++++||.++--+.++.|- .+.|+.-.||.+.++|.++|++. +
T Consensus 191 ltekD~~dl~---f~~~~~vD~---Ia~SFVr~a~Dv~~~r~~l~~~~~--~i~IiaKIE~~eav~nldeIl~~--s--- 257 (606)
T 3t05_A 191 ITEKDAEDIR---FGIKENVDF---IAASFVRRPSDVLEIREILEEQKA--NISVFPKIENQEGIDNIEEILEV--S--- 257 (606)
T ss_dssp SCHHHHHHHH---HHHHTTCSE---EEETTCCSHHHHHHHHHHHHHTTC--CCEEEECCCSHHHHHTHHHHHHH--C---
T ss_pred CChhHHHHHH---HHHHcCCCE---EEECCCCCHHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHhHHHHHHh--C---
Confidence 3554444443 333444443 357999999999999999888885 78999999999999999999996 1
Q ss_pred HHhhccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 583 YRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 583 yr~~l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
--||+|-.|=+-+-|. ..+..+|+++.+.|+++|..+..
T Consensus 258 --------DGImVARGDLgvei~~----e~vp~~Qk~ii~~~~~~gkpvi~ 296 (606)
T 3t05_A 258 --------DGLMVARGDMGVEIPP----EKVPMVQKDLIRQCNKLGKPVIT 296 (606)
T ss_dssp --------SCEEEEHHHHHHHSCG----GGHHHHHHHHHHHHHHHTCCEEE
T ss_pred --------CEEEEccccccCcCCH----HHHHHHHHHHHHHHHHcCCCeEE
Confidence 2599999887776664 58999999999999999998775
No 19
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=84.83 E-value=0.92 Score=54.03 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=78.6
Q ss_pred hhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchh
Q 002087 526 GAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAG 605 (969)
Q Consensus 526 ~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG 605 (969)
.-.++||.+++.|+.++.-++++.|. ..+.|+.-.||.+.++|.++|++.- =-||+|-.|=+=.-|
T Consensus 188 d~v~~sfV~~a~dv~~~~~~l~~~~~-~~~~iiakIE~~eav~nldeIl~~~-------------DgImVargDLgvei~ 253 (587)
T 2e28_A 188 DFIAASFVRRASDVLEIRELLEAHDA-LHIQIIAKIENEEGVANIDEILEAA-------------DGLMVARGDLGVEIP 253 (587)
T ss_dssp SEEEESSCCSHHHHHHHHHHHHHTTC-TTSEEEEEECSHHHHHTHHHHHHHS-------------SEEEEEHHHHHHHSC
T ss_pred CEEEECCCCCHHHHHHHHHHHHHcCC-CCceEEEEECCHHHHHhHHHHHHhC-------------CEEEEcCchhhhhcC
Confidence 34578999999999999988888874 3688999999999999999999871 259999999888878
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 606 RFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 606 ~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
+ ..+..+|+++.+.|+++|..+..
T Consensus 254 ~----~~v~~~qk~ii~~~~~~gkpvi~ 277 (587)
T 2e28_A 254 A----EEVPLIQKLLIKKSNMLGKPVIT 277 (587)
T ss_dssp G----GGHHHHHHHHHHHHHHHTCCEEE
T ss_pred H----HHHHHHHHHHHHHHHHcCCCeEE
Confidence 6 88999999999999999998765
No 20
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=83.50 E-value=0.35 Score=53.87 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=73.5
Q ss_pred hHHhhcCCChhhHHHHHHHHHHc--CCC----------------------------CCCccccccCChHHHhcHHHHHHH
Q 002087 527 AYIISMATAPSDVLAVELLQREC--HVK----------------------------QPLRVVPLFEKLADLEAAPAALAR 576 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~ke~--Gl~----------------------------~~l~VvPLFETi~DL~~a~~im~~ 576 (969)
..+++|++++.|+-++.-+++.. |.. ..+.|+++.||...+.|+++|+.
T Consensus 120 gImlP~V~saee~~~~~~~~~~~p~g~Rg~~~~a~~~G~~~~~~~~~~~~y~~~a~~~i~vi~mIEt~~av~nldeIaa- 198 (339)
T 1izc_A 120 GIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAA- 198 (339)
T ss_dssp EEEETTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHT-
T ss_pred EEEeCCCCCHHHHHHHHHHhccCccCcccccchhhcccccccccccchhhhhhhcCcCceEEEEEChHHHHHHHHHHhc-
Confidence 36999999999999998887752 211 13679999999999999999973
Q ss_pred HhhcHHHHhhccCeeEEEEeeccCCcc--------hhHHhHHHHHHHHHHHHHHHHHHhCCeE
Q 002087 577 LFSVDWYRNRINGKQEVMIGYSDSGKD--------AGRFSAAWQLYKAQEELIKVAKQYGIKL 631 (969)
Q Consensus 577 ll~~p~yr~~l~~~QeVMlGYSDS~KD--------gG~las~W~Ly~Aq~~L~~va~~~gV~l 631 (969)
. .+.--||||-.|=+.+ -|+-. .-++..++++++..|+++|+.+
T Consensus 199 ---~-------~~vD~l~iG~~DLs~~~~~~~~~~lG~~~-~p~v~~a~~~iv~aaraaGk~~ 250 (339)
T 1izc_A 199 ---M-------PEIHGLMFGPGDYMIDAGLDLNGALSGVP-HPTFVEAMTKFSTAAQRNGVPI 250 (339)
T ss_dssp ---C-------TTCCCEEECHHHHHHHTTCCTTCCTTSCC-CHHHHHHHHHHHHHHHHTTCCE
T ss_pred ---C-------CCCCEEEECHHHHHhhhhcccchhhCCCC-CHHHHHHHHHHHHHHHHhCCce
Confidence 2 2456799998886666 45433 5678899999999999999987
No 21
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A
Probab=77.67 E-value=1.7 Score=46.71 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=67.2
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcch
Q 002087 525 FGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDA 604 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDg 604 (969)
+..+++.|++++.|+-.+- .+.|+|+.||...+.|+.+|.. ..+..-+++|-.|=+.+-
T Consensus 85 ~~gi~lPKv~s~~~v~~~~----------~~~i~~~IET~~~v~~~~eIaa-----------~~~v~~l~~G~~Dl~~~l 143 (273)
T 1u5h_A 85 YTTVMLPKAESAAQVIELA----------PRDVIALVETARGAVCAAEIAA-----------ADPTVGMMWGAEDLIATL 143 (273)
T ss_dssp CCEEEETTCCCHHHHHTTT----------TSEEEEEECSHHHHHTHHHHHH-----------STTEEEEEECHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHh----------hCCEEEEEeCHHHHHhHHHHhc-----------CCCCcEEEecHHHHHHHh
Confidence 4558999999999987642 6889999999999999988861 246778999988877776
Q ss_pred hHHhH-------HHHHHHHHHHHHHHHHHhCCeE
Q 002087 605 GRFSA-------AWQLYKAQEELIKVAKQYGIKL 631 (969)
Q Consensus 605 G~las-------~W~Ly~Aq~~L~~va~~~gV~l 631 (969)
|.-.. .=.+..|..+++..|+.+|+..
T Consensus 144 G~~~~~~~~~~~~~~~~~a~~~iv~aaraaG~~a 177 (273)
T 1u5h_A 144 GGSSSRRADGAYRDVARHVRSTILLAASAFGRLA 177 (273)
T ss_dssp TCSCSBCTTSCBCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCccccccHHHHHHHHHHHHHHHHcCCCc
Confidence 64321 1147788889999999999965
No 22
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=76.79 E-value=0.77 Score=49.21 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=78.5
Q ss_pred HHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHc-----------------CC--------CCCCccccccCChHHHhc
Q 002087 515 HVIAELPADNFGAYIISMATAPSDVLAVELLQREC-----------------HV--------KQPLRVVPLFEKLADLEA 569 (969)
Q Consensus 515 ~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~-----------------Gl--------~~~l~VvPLFETi~DL~~ 569 (969)
+.+.+.+.+ ..+++|++++.|+-++.-.+|.- |. ...+.|+++.||.+.+.|
T Consensus 84 ~~~l~~g~~---~I~~P~V~s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~av~~ 160 (267)
T 2vws_A 84 KQVLDIGAQ---TLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN 160 (267)
T ss_dssp HHHHHTTCC---EEEECCCCSHHHHHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHHHHT
T ss_pred HHHHHhCCC---EEEeCCCCCHHHHHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHHHHH
Confidence 333344443 56899999999988886665421 10 013779999999999999
Q ss_pred HHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHhH--HHHHHHHHHHHHHHHHHhCCeEEEe
Q 002087 570 APAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSA--AWQLYKAQEELIKVAKQYGIKLTMF 634 (969)
Q Consensus 570 a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~las--~W~Ly~Aq~~L~~va~~~gV~l~~F 634 (969)
+++|.. . .+.--+|+|-.|=+.+-|.... .=++..++++++..|+++|+.+.+|
T Consensus 161 ~~eIa~----~-------~gvd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~aaG~~~~v~ 216 (267)
T 2vws_A 161 LDEILD----V-------EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL 216 (267)
T ss_dssp HHHHHT----S-------TTCCEEEECHHHHHHHTTCSSSCCTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhC----C-------CCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 999973 2 3567799999988888775321 1257889999999999999998775
No 23
>3oyz_A Malate synthase; TIM barrel, transferase; HET: ACO; 1.95A {Haloferax volcanii} PDB: 3oyx_A* 3pug_A
Probab=66.64 E-value=3.4 Score=47.27 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=82.0
Q ss_pred HHHHH-HHHHHHHHHhC---CCCchhhHHhhcCCChhhHHHHHHHH----HHcCCCC-CCccccccCChHH---HhcHHH
Q 002087 505 EEIAD-VLETFHVIAEL---PADNFGAYIISMATAPSDVLAVELLQ----RECHVKQ-PLRVVPLFEKLAD---LEAAPA 572 (969)
Q Consensus 505 ~~~~e-~l~~f~~i~~~---~~~a~~~yIISmt~sasDvL~V~lL~----ke~Gl~~-~l~VvPLFETi~D---L~~a~~ 572 (969)
..+.. ..+-+..+... ....+..+++.+++++.||-.+..+. +..|+.. ++.|+|+.||... |.|+..
T Consensus 92 ~~T~~~~~~DL~al~~~~~~a~~~~dgIvLPKvesa~dV~~l~~~L~~~E~~~Gl~~G~i~lialIETa~g~~~L~na~e 171 (433)
T 3oyz_A 92 PETRYQGFQHMLDITDPERGAVEHIHGFVIPEVGGIDDWKKADEFFTIVEHEHGLDEGSLAMSVIIESGEAELAMGDLRD 171 (433)
T ss_dssp HHHHHHHHHHHHHHTCGGGSCGGGCCEEEECSCCSHHHHHHHHHHHHHHHHHTTCCTTCSEEEEEECSHHHHHHGGGHHH
T ss_pred CCChhccHHHHHHHhccccccccCCCEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEEEeChhHHHHHHHHHH
Confidence 34444 44445555431 11345567999999999998775443 3567754 7899999999999 999999
Q ss_pred HHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHhHH---HHHHHHHHHHHHHHHHhCCeE
Q 002087 573 ALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAA---WQLYKAQEELIKVAKQYGIKL 631 (969)
Q Consensus 573 im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~las~---W~Ly~Aq~~L~~va~~~gV~l 631 (969)
|.... ++...+..-+++|-.|=+++-|.-... =.+..|...++..|+.+|+..
T Consensus 172 IAaas------r~~~pRV~gL~~G~~DLsasLG~~~~~~~~~el~~ARs~IVlAARAaGi~a 227 (433)
T 3oyz_A 172 EMGKP------TNNLERLFLLVDGEVDYTKDMRAMTPTGELPAWPELRHNTSRGASAAGCVA 227 (433)
T ss_dssp HHHCT------TCCGGGEEEEEECHHHHHHHHTCCCTTCCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred HHhhh------ccCCCCeEEEEECHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 97621 100125677889988877777654322 135567778899999999864
No 24
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=53.46 E-value=22 Score=41.69 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=76.1
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHHcCC-----CCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeecc
Q 002087 525 FGAYIISMATAPSDVLAVELLQRECHV-----KQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSD 599 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke~Gl-----~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSD 599 (969)
+.-+-+|+.++++||.++--+.++.|- ...+.|+.=+|+.+.++|-++|++. -=-||+.--|
T Consensus 230 vD~ialSFVr~~~Dv~~~r~~l~~~g~~~~~~~~~i~IiaKIE~~~av~NldeIi~~-------------sDgIMVARGD 296 (526)
T 4drs_A 230 LDFIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINFDSICSE-------------SDGIMVARGD 296 (526)
T ss_dssp CSEEEETTCCSHHHHHHHHHHHHTCCTTTTTCCCCCEEEEEECSHHHHHTHHHHHHH-------------SSEEEEECTT
T ss_pred cCeeeecccCchhhHHHHHHHHHhhCcccccccccceeeeehhccHHHHHHHHHHhh-------------ccEEEEECCc
Confidence 334568999999999999988888764 2578899999999999999999986 2359998766
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 600 SGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 600 S~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
=+-+-| -..+..+|+++.+.|+++|..+..
T Consensus 297 LgvEip----~e~vp~~QK~II~~c~~~gKPVI~ 326 (526)
T 4drs_A 297 LGMEIP----PEKIFVAQKCMISKCNVAGKPVVT 326 (526)
T ss_dssp HHHHSC----GGGHHHHHHHHHHHHHHHTCCEEE
T ss_pred ccccCC----HHHHHHHHHHHHHHHHHcCCeEEE
Confidence 555544 458999999999999999998876
No 25
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=40.24 E-value=14 Score=42.80 Aligned_cols=50 Identities=34% Similarity=0.697 Sum_probs=35.2
Q ss_pred cCeeEEEE----eeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEE---EecCCCCCCCC
Q 002087 588 NGKQEVMI----GYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLT---MFHGRGGTVGR 643 (969)
Q Consensus 588 ~~~QeVMl----GYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~---~FHGRGGsvgR 643 (969)
.|+.-||+ |.--+..++ -=+|+=|+ +|.++++++|.|+. =||+.||.||=
T Consensus 46 ~GVdGVmvDVWWGiVE~~~P~---~YdWsgY~---~L~~mv~~~GLKlq~vmSFHqCGgNVGD 102 (498)
T 1fa2_A 46 GGCDGVMVDVWWGIIEAKGPK---QYDWSAYR---ELFQLVKKCGLKIQAIMSFHQCGGNVGD 102 (498)
T ss_dssp TTCCEEEEEEEHHHHTCSBTT---BCCCHHHH---HHHHHHHHTTCEEEEEEECSCBCCCTTC
T ss_pred cCCCEEEEEeEeeeeccCCCC---ccCcHHHH---HHHHHHHHcCCeEEEEEEeeecCCCCCC
Confidence 36677777 333322222 22688886 68999999999985 49999999875
No 26
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=39.59 E-value=14 Score=42.66 Aligned_cols=50 Identities=30% Similarity=0.654 Sum_probs=35.2
Q ss_pred cCeeEEEE----eeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEE---EecCCCCCCCC
Q 002087 588 NGKQEVMI----GYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLT---MFHGRGGTVGR 643 (969)
Q Consensus 588 ~~~QeVMl----GYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~---~FHGRGGsvgR 643 (969)
.|+.-||+ |.--+..++ -=+|+=|+ +|.++++++|.|+. =||+.||.||=
T Consensus 45 ~GVdGVmvDVWWGiVE~~~P~---~YdWsgY~---~l~~mv~~~GLKlq~vmSFHqCGgNVGD 101 (495)
T 1wdp_A 45 AGVDGVMVDVWWGIIELKGPK---QYDWRAYR---SLLQLVQECGLTLQAIMSFHQCGGNVGD 101 (495)
T ss_dssp TTCCEEEEEEEHHHHTCSSTT---CCCCHHHH---HHHHHHHHTTCEEEEEEECSCBCCSTTC
T ss_pred cCCCEEEEEeEeeeeccCCCC---ccCcHHHH---HHHHHHHHcCCeEEEEEEeeecCCCCCC
Confidence 36677777 333322222 22688886 78999999999985 49999999875
No 27
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A*
Probab=37.09 E-value=16 Score=42.44 Aligned_cols=49 Identities=35% Similarity=0.701 Sum_probs=34.6
Q ss_pred CeeEEEE----eeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEE---EecCCCCCCCC
Q 002087 589 GKQEVMI----GYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLT---MFHGRGGTVGR 643 (969)
Q Consensus 589 ~~QeVMl----GYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~---~FHGRGGsvgR 643 (969)
++.-||+ |.--+..++ -=+|+=|+ +|.++++++|.|+. =||+.||.||=
T Consensus 44 GVdGVmvDVWWGiVE~~~P~---~YdWsgY~---~L~~mvr~~GLKlq~vmSFHqCGgNVGD 99 (535)
T 2xfr_A 44 GVDGVMVDVWWGLVEGKGPK---AYDWSAYK---QLFELVQKAGLKLQAIMSFHQCGGNVGD 99 (535)
T ss_dssp TCCEEEEEEEHHHHTCSSTT---CCCCHHHH---HHHHHHHHTTCEEEEEEECSCBCCSTTC
T ss_pred CCCEEEEEeEeeeeccCCCC---ccCcHHHH---HHHHHHHHcCCeEEEEEEeeecCCCCCC
Confidence 6677777 333322222 22788886 68899999999985 49999999875
No 28
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=30.01 E-value=67 Score=35.25 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=88.7
Q ss_pred hhHHhhcCCChhhHHHHHHHHH-------HcCCC--CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEe
Q 002087 526 GAYIISMATAPSDVLAVELLQR-------ECHVK--QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIG 596 (969)
Q Consensus 526 ~~yIISmt~sasDvL~V~lL~k-------e~Gl~--~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlG 596 (969)
..-+|.|.+++.++..+..+.+ ..|.. ..+.|.+..||...+.+++.|... ..-+.||
T Consensus 137 ~~ImvPmV~s~~E~~~a~~~v~~~~~~~r~~G~~~~~~~~vg~mIEtp~av~~~d~Ia~~-------------vD~~siG 203 (324)
T 2xz9_A 137 VQIMYPMISSVEEVRKANSILEEVKAELDREGVKYDKEIKVGIMVEIPSAAVTADILAKE-------------VDFFSIG 203 (324)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCTTCEEEEEECSHHHHHTHHHHTTT-------------CSEEEEC
T ss_pred CEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHh-------------CcEEEEC
Confidence 3457899999999777655543 23653 258899999999999999999843 2345555
Q ss_pred eccCC----------cchhHHhH--HHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchh-hhhhcCCCCcccCc
Q 002087 597 YSDSG----------KDAGRFSA--AWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTH-LAILSQPPDTIHGS 663 (969)
Q Consensus 597 YSDS~----------KDgG~las--~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt~-~ailaqP~gsv~g~ 663 (969)
-.|=+ ...|++-. .=++.++-+.+++.|+++|+.+.++ |. + +|-|.. .....+ |- ++-
T Consensus 204 tnDLtq~~lg~dR~~~~~~~~~~~~~p~v~~ai~~vv~aar~aG~~vgvc---ge-~--~~dp~~~~~l~~l--G~-~~~ 274 (324)
T 2xz9_A 204 TNDLTQYTLAVDRMNEHVKEYYQPFHPAILRLVKMVIDAAHKEGKFAAMC---GE-M--AGDPLAAVILLGL--GL-DEF 274 (324)
T ss_dssp HHHHHHHHTTCCTTCGGGGGGCCTTCHHHHHHHHHHHHHHHHTTCEEEEC---SG-G--GGCHHHHHHHHHH--TC-CEE
T ss_pred HHHHHHHHhCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHCCceeec---Cc-c--CCCHHHHHHHHHC--CC-CEE
Confidence 44422 21121111 2358889999999999999998663 22 2 334532 233333 22 222
Q ss_pred eeeecchhHHHhhhCChhHHHHHHHHHHHHHHH
Q 002087 664 LRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLE 696 (969)
Q Consensus 664 irvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~ 696 (969)
.--..|...+..-|+.-.. ..++.++..++.
T Consensus 275 si~p~~i~~~~~~~~~~~~--~~~~~~~~~~l~ 305 (324)
T 2xz9_A 275 SMSATSIPEIKNIIRNVEY--EKAKEIAEKALN 305 (324)
T ss_dssp EECGGGHHHHHHHHTTSCH--HHHHHHHHHHHT
T ss_pred EEChhHHHHHHHHHHHcCH--HHHHHHHHHHHc
Confidence 2234456666666655433 445555555553
No 29
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=20.97 E-value=40 Score=37.29 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=14.1
Q ss_pred HhhcHHHHhhccCeeEEEEeeccCC
Q 002087 577 LFSVDWYRNRINGKQEVMIGYSDSG 601 (969)
Q Consensus 577 ll~~p~yr~~l~~~QeVMlGYSDS~ 601 (969)
||+.+.|....+ .-+.+||||-+
T Consensus 93 L~d~~~~~~~~~--~K~~iGySDiT 115 (346)
T 4eys_A 93 LFENDQLQKVIK--QKIFLGFSDTT 115 (346)
T ss_dssp HHTTSHHHHHCC--CCEEEECTTHH
T ss_pred hhchhhhhHhhC--CcEEEEecHHH
Confidence 344434443323 47999999976
No 30
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A*
Probab=20.97 E-value=69 Score=37.64 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=64.5
Q ss_pred hhHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccC
Q 002087 526 GAYIISMATAPSDVLAVELLQ----RECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDS 600 (969)
Q Consensus 526 ~~yIISmt~sasDvL~V~lL~----ke~Gl~-~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS 600 (969)
..+++..++++.|+-.+--+. +..|+. ..+.+.+|.||+..+.|..+|+..+ +. ...-+..|.-|=
T Consensus 208 ~~i~LPK~es~~Ev~~~~~~f~~~E~~lGlp~gtiki~vlIET~~a~~n~~eIa~al------~~---rv~gLn~G~~Dy 278 (532)
T 3cuz_A 208 PYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHAL------RD---HIVGLNCGRWDY 278 (532)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHHHHHTTCCTTCSEEEEECCSHHHHTSHHHHHHHT------TT---TEEEEECCSHHH
T ss_pred CeEEccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeccHHHHHhHHHHHHhc------cC---CceEEEcCHHHH
Confidence 456889999999987664332 456875 5799999999999999999998543 23 345577776664
Q ss_pred CcchhH-------H----------hHHHHHHHHHHHHH-HHHHHhCCeE
Q 002087 601 GKDAGR-------F----------SAAWQLYKAQEELI-KVAKQYGIKL 631 (969)
Q Consensus 601 ~KDgG~-------l----------as~W~Ly~Aq~~L~-~va~~~gV~l 631 (969)
..|-+. + ++-| ..|-.++. ..|..+|+..
T Consensus 279 ~~s~i~~~~~~~~~~lpdr~~~~~~~~~--l~Ay~~llv~ac~a~G~~a 325 (532)
T 3cuz_A 279 IFSYIKTLKNYPDRVLPDRQAVTMDKPF--LNAYSRLLIKTCHKRGAFA 325 (532)
T ss_dssp HHHHHHHTTTCGGGCCCCGGGCCTTSHH--HHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhcccCCCccCccccccccchHH--HHHHHHHHHHHHHHcCCCC
Confidence 443311 1 2223 34555555 8899999854
No 31
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=20.08 E-value=95 Score=38.23 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=67.9
Q ss_pred hHHhhcCCChhhHHHHHHHHHHcCCCC--C-CccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcc
Q 002087 527 AYIISMATAPSDVLAVELLQRECHVKQ--P-LRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKD 603 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~ke~Gl~~--~-l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KD 603 (969)
.-+|.|++++.++-.+.-++++.|+.. . +.|.+..||...+.++++|.+. + --+.||-.|=+.+
T Consensus 643 ~ImvP~V~t~~E~~~~~~~l~~~g~~~~~~~~~vg~MIEtp~a~~~ad~ia~~----------v---D~~siGtnDLtq~ 709 (794)
T 2ols_A 643 EIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMMCELPSNAVLAEQFLQY----------F---DGFSIGSNDMTQL 709 (794)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHTTCCTTGGGCCEEEEECSHHHHHTHHHHHTT----------S---SEEEEEHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHHhcCcccCccCCEEEEEECcHHHHHHHHHHHHh----------C---CEEEECHHHHHHH
Confidence 458899999999999999999999852 3 7899999999999999999853 2 1233333222211
Q ss_pred -hh------HHh-----HHHHHHHHHHHHHHHHHHhCCeEEE
Q 002087 604 -AG------RFS-----AAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 604 -gG------~la-----s~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
-| .++ .+=++.++-+.+++.|+++|+.+.+
T Consensus 710 tlg~~R~~~~~~~~~~~~~p~v~~~i~~~v~aar~~g~~vgi 751 (794)
T 2ols_A 710 TLGLDRDSGLVSESFDERNPAVKVMLHLAISACRKQNKYVGI 751 (794)
T ss_dssp HHTCCTTCTTTGGGCCTTSHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HhCCCCCcchhccccCCCCHHHHHHHHHHHHHHHHhCCEEEE
Confidence 11 111 1235788999999999999999844
Done!