BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002089
(969 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 1732 bits (4485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/963 (85%), Positives = 889/963 (92%), Gaps = 2/963 (0%)
Query: 7 LEKMASIDAQLRLLVPRKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKETVQECYELAA 66
LEK+ASIDAQLRLLVP KVSEDDKLIEYDALLLD+FLDILQDLHGEDLKE VQECYEL+A
Sbjct: 12 LEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKEAVQECYELSA 71
Query: 67 EYEGKNDPSKFKELGNVLTSLDPGDSIVIAKAFSHMLNLANLAEELQIAHRRRIKKLKKG 126
EYEGK+DP K +ELG+VLTSLDPGDSIVIAKAFSHMLNLANLAEE+QIA+RRRIK LK+G
Sbjct: 72 EYEGKHDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIK-LKRG 130
Query: 127 DFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQK 186
DFADE +ATTESDIEETFK+LV +LNKSPEE+FDALKNQTVDLVLTAHPTQSVRRSLLQK
Sbjct: 131 DFADEANATTESDIEETFKKLVLKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQK 190
Query: 187 HARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFH 246
H RIRNCLAQLYAKDITPDDKQELDEAL REIQAAFRTDEIRRT PTPQDEMRAGMSYFH
Sbjct: 191 HGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFH 250
Query: 247 ETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCL 306
ETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCL
Sbjct: 251 ETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCL 310
Query: 307 LARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEP 366
LARMMA+N+Y+SQIEDLMFEMSMWRC+ ELR RA+ L+R++++D KHYIEFWKQ+PP EP
Sbjct: 311 LARMMASNMYFSQIEDLMFEMSMWRCNSELRVRAEELYRTARRDVKHYIEFWKQVPPTEP 370
Query: 367 YRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSCGDRA 426
YRVILGDVRDKLY TRER R LLAHGISDIPEEAV+TNVEQFLEPLELCYRSLC CGDR
Sbjct: 371 YRVILGDVRDKLYNTRERSRHLLAHGISDIPEEAVYTNVEQFLEPLELCYRSLCDCGDRV 430
Query: 427 IADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWL 486
IADGSLLDFLRQVSTFGLSLV+LDIRQESDRHTDV+DAIT+HLEIGSYREWSEEKRQEWL
Sbjct: 431 IADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWL 490
Query: 487 LSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQ 546
L+ELSGKRPLFG DLPKTEE+ DVL+TF+V+AELP+D FGAYIISMAT+PSDVLAVELLQ
Sbjct: 491 LAELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQ 550
Query: 547 RECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSVDWYRNRINGKQEVMIGYSDSGKDAGR 606
RECHVK PLRVVPLFEK FS+DWYRNRI+GKQEVMIGYSDSGKDAGR
Sbjct: 551 RECHVKHPLRVVPLFEKLADLEAAPAAMARLFSIDWYRNRIDGKQEVMIGYSDSGKDAGR 610
Query: 607 FSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSLRV 666
FSAAWQLYKAQEE+IKVAK++G+KL +FH PTHLAILSQPPDTIHGSLRV
Sbjct: 611 FSAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRV 670
Query: 667 TVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRS 726
TVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM PPISP+PEWR +MD+MAV+ATEEYRS
Sbjct: 671 TVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATEEYRS 730
Query: 727 IVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPV 786
IVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPV
Sbjct: 731 IVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPV 790
Query: 787 WLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVS 846
WLGFGAAFKH I+KD +NL MLQEMY WPFFRVTIDLVEMVFAKG+ IAAL D+LLVS
Sbjct: 791 WLGFGAAFKHAIKKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVS 850
Query: 847 KDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLK 906
+DLW FGE LR NYEETK LL+IAGH+DLLEGDPYLKQR+RLRD+YITTLNVCQAYTLK
Sbjct: 851 EDLWPFGESLRANYEETKDYLLKIAGHRDLLEGDPYLKQRIRLRDSYITTLNVCQAYTLK 910
Query: 907 RIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQ 966
RIRDPNYHV +RPHIS+E +E KPADEL+ LN +SEYAPGLEDTLILTMKGIAAG+Q
Sbjct: 911 RIRDPNYHVTLRPHISKEYA-AEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQ 969
Query: 967 NTG 969
NTG
Sbjct: 970 NTG 972
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 1684 bits (4362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/967 (83%), Positives = 875/967 (90%), Gaps = 2/967 (0%)
Query: 3 ANRNLEKMASIDAQLRLLVPRKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKETVQECY 62
ANRN+EK+ASIDAQLRLLVP KVSEDDKL+EYDALLLD+FLDILQDLHGEDLKE VQ+CY
Sbjct: 26 ANRNVEKLASIDAQLRLLVPGKVSEDDKLVEYDALLLDKFLDILQDLHGEDLKEAVQQCY 85
Query: 63 ELAAEYEGKNDPSKFKELGNVLTSLDPGDSIVIAKAFSHMLNLANLAEELQIAHRRRIKK 122
EL+AEYEGK+DP K +ELG++LTSLD GDSIVIAKAFSHMLNLANLAEELQIA+RRRIK
Sbjct: 86 ELSAEYEGKHDPKKLEELGSLLTSLDTGDSIVIAKAFSHMLNLANLAEELQIAYRRRIK- 144
Query: 123 LKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRS 182
LK GDFADE +ATTESDIEETFKRLV +LNKSPEE+FDALKNQTV+LVLTAHPTQSVRRS
Sbjct: 145 LKSGDFADEANATTESDIEETFKRLVHKLNKSPEEVFDALKNQTVELVLTAHPTQSVRRS 204
Query: 183 LLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGM 242
LLQKH RIRNCLAQLYAKDITPDDKQELDEAL REIQAAFRTDEIRRT PTPQDEMRAGM
Sbjct: 205 LLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGM 264
Query: 243 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTR 302
SYFHETIWKGVPKFLRRVDTALKNIGINER PYNAPLIQFSSWMGGDRDGNPRVTPEVTR
Sbjct: 265 SYFHETIWKGVPKFLRRVDTALKNIGINERFPYNAPLIQFSSWMGGDRDGNPRVTPEVTR 324
Query: 303 DVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWKQIP 362
DVCLLARMM +N+Y+SQIEDLM EMSMWRC+ ELR RA+ L+R+++KD KHYIEFWK+IP
Sbjct: 325 DVCLLARMMTSNMYFSQIEDLMIEMSMWRCNSELRVRAEELYRTARKDVKHYIEFWKRIP 384
Query: 363 PNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSC 422
PN+PYRVILGDVRDKLY TRER R LL G SDIP+EAV+TNVEQ LEPLELCYRSLC C
Sbjct: 385 PNQPYRVILGDVRDKLYNTRERSRHLLVDGKSDIPDEAVYTNVEQLLEPLELCYRSLCDC 444
Query: 423 GDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKR 482
GD IADGSLLDFLRQVSTFGLSLV+LDIRQESDRHT+V+DAIT+HL IGSYREWSEEKR
Sbjct: 445 GDHVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKR 504
Query: 483 QEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAV 542
QEWLL+ELSGKRPL GPDLPKTEE+ D L+TF V+AELP+D FGAYIISMAT+ SDVLAV
Sbjct: 505 QEWLLAELSGKRPLIGPDLPKTEEVKDCLDTFKVLAELPSDCFGAYIISMATSTSDVLAV 564
Query: 543 ELLQRECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSVDWYRNRINGKQEVMIGYSDSGK 602
ELLQRE H+K PLRVVPLFEK FS+DWYRNRI+GKQEVMIGYSDSGK
Sbjct: 565 ELLQREYHIKHPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRIDGKQEVMIGYSDSGK 624
Query: 603 DAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHG 662
DAGRFSAAWQLYK QE+++K+AK++G+KL +FH PTHLA+LSQPPDTI+G
Sbjct: 625 DAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGGPTHLALLSQPPDTING 684
Query: 663 SLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATE 722
SLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM PPISP+PEWR +MD+MAV+ATE
Sbjct: 685 SLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATE 744
Query: 723 EYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRF 782
EYRS+VFKEPRFVEYFRLATPELE+GRMNIGSRPSKRKPSGGIESLRAIPWIF+WTQTRF
Sbjct: 745 EYRSVVFKEPRFVEYFRLATPELEFGRMNIGSRPSKRKPSGGIESLRAIPWIFSWTQTRF 804
Query: 783 HLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQ 842
HLPVWLGFGAAFKH IQKD +NL MLQEMY WPFFRVTIDLVEMVFAKGN IAAL D+
Sbjct: 805 HLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGNPGIAALNDK 864
Query: 843 LLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQA 902
LLVS+DL FGE LR NYEETK LL+IAGHKDLLEGDPYLKQ +RLRD YITTLNVCQA
Sbjct: 865 LLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRLRDPYITTLNVCQA 924
Query: 903 YTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIA 962
YTLKRIRDPNYHV +RPHIS+E +E KPADEL+ LN +SEYAPGLEDTLILTMKGIA
Sbjct: 925 YTLKRIRDPNYHVTLRPHISKEYA-AEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIA 983
Query: 963 AGLQNTG 969
AG+QNTG
Sbjct: 984 AGMQNTG 990
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
Length = 970
Score = 1520 bits (3935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 736/963 (76%), Positives = 821/963 (85%), Gaps = 4/963 (0%)
Query: 8 EKMASIDAQLRLLVPRKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKETVQECYELAAE 67
EK SIDAQLR LVP KVSEDDKLIEYDALL+DRFL+ILQDLHG L+E VQECYE++A+
Sbjct: 11 EKHHSIDAQLRQLVPGKVSEDDKLIEYDALLVDRFLNILQDLHGPSLREFVQECYEVSAD 70
Query: 68 YEGKNDPSKFKELGNVLTSLDPGDSIVIAKAFSHMLNLANLAEELQIAHRRRIKKLKKGD 127
YEGK D +K ELG LT L P D+I++A + HMLNLANLAEE+QIAHRRR KLKKG
Sbjct: 71 YEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSKLKKGG 130
Query: 128 FADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKH 187
FADE SATTESDIEET KRLV E+ KSPEE+F+ALKNQTVDLV TAHPTQS RRSLLQK+
Sbjct: 131 FADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKN 190
Query: 188 ARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHE 247
ARIRNCL QL AKDIT DDKQELDEALQREIQAAFRTDEIRR QPTPQ EMR GMSY HE
Sbjct: 191 ARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHE 250
Query: 248 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLL 307
T+WKGVPKFLRRVDTALKNIGINER+PYN LI+FSSWMGGDRDGNPRVTPEVTRDVCLL
Sbjct: 251 TVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLL 310
Query: 308 ARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSS-KKDAKHYIEFWKQIPPNEP 366
ARMMAANLY QIE+LMFE+SMWRC+DELR RA+ LH SS K K+YIEFWKQIPPNEP
Sbjct: 311 ARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEP 370
Query: 367 YRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSCGDRA 426
YRVILG VRDKLY TRER R LLA G+S+I E+ FT++E+FLEPLELCY+SLC CGD+A
Sbjct: 371 YRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKA 430
Query: 427 IADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWL 486
IADGSLLD LRQV TFGLSLV+LDIRQES+RHTDVIDAIT HL IGSYREW E+KRQEWL
Sbjct: 431 IADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWL 490
Query: 487 LSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQ 546
LSEL GKRPL PDLP+T+EIADV+ FHV+AELP D+FG YIISMATAPSDVLAVELLQ
Sbjct: 491 LSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQ 550
Query: 547 RECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSVDWYRNRINGKQEVMIGYSDSGKDAGR 606
REC V+QPL VVPLFE+ FSVDWY +RI GKQ+VM+GYSDSGKDAGR
Sbjct: 551 RECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGR 610
Query: 607 FSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSLRV 666
SAAWQLY+AQEE+ +VAK+YG+KLT+FH PTHLAILSQPPDTI+GS+RV
Sbjct: 611 LSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRV 670
Query: 667 TVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRS 726
TVQGEVIE FGEEHLCF+TLQRFTAATLEHGM PP+SPKPEWR +MDEMAV+ATEEYRS
Sbjct: 671 TVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRS 730
Query: 727 IVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPV 786
+V KE RFVEYFR ATPE EYGRMNIGSRP+KR+P GGI +LRAIPWIF+WTQTRFHLPV
Sbjct: 731 VVVKEARFVEYFRSATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSWTQTRFHLPV 790
Query: 787 WLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVS 846
WLG GAAFK I KD+RN +L+EMYN WPFFRVT+DL+EMVFAKG+ IA LYD+LLV+
Sbjct: 791 WLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVA 850
Query: 847 KDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLK 906
++L FG++LR Y ET+ LLLQIAGHKD+LEGDP+LKQ L LR+ YITTLNV QAYTLK
Sbjct: 851 EELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLK 910
Query: 907 RIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQ 966
RIRDPN+ V +P +S+E + KPA LVKLN +SEY PGLEDTLILTMKGIAAG+Q
Sbjct: 911 RIRDPNFKVTPQPPLSKEFADEN--KPAG-LVKLNPASEYPPGLEDTLILTMKGIAAGMQ 967
Query: 967 NTG 969
NTG
Sbjct: 968 NTG 970
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/928 (39%), Positives = 532/928 (57%), Gaps = 67/928 (7%)
Query: 44 DILQDLHGEDLKETVQECYELAAEYEGKNDPSKFKELGNVLTSLDPGDSIVIAKAFSHML 103
+ ++D GE + E V+ +L+ ND ++ +EL L +L + + +A+AFS L
Sbjct: 21 ETIKDALGEHILERVETIRKLSKSSRAGNDANR-QELLTTLQNLSNDELLPVARAFSQFL 79
Query: 104 NLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALK 163
NLAN AE+ KG+ +A+ I T ++L + S + I A++
Sbjct: 80 NLANTAEQYHSIS-------PKGE-----AASNPEVIARTLRKLKNQPELSEDTIKKAVE 127
Query: 164 NQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFR 223
+ +++LVLTAHPT+ RR+L+ K + CL QL KDI + +L L++ I ++
Sbjct: 128 SLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWH 187
Query: 224 TDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALK-NIGINERVPYNAPLIQF 282
TDEIR+ +P+P DE + G + ++W+GVP +LR ++ L+ N+G ++P ++F
Sbjct: 188 TDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGY--KLPVEFVPVRF 245
Query: 283 SSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADV 342
+SWMGGDRDGNP VT ++TR V LL+R A +L+ I+ L+ E+SM + EL
Sbjct: 246 TSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPEL------ 299
Query: 343 LHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPE-EAV 401
L ++ A EPYR ++ ++R +L T+ + L ++P+ E +
Sbjct: 300 LALVGEEGAA------------EPYRYLMKNLRSRLMATQAWLEARLKG--EELPKPEGL 345
Query: 402 FTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDV 461
T E+ EPL CY+SL +CG IA+G LLD LR+V FG+ LVR+DIRQES RHT+
Sbjct: 346 LTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEA 405
Query: 462 IDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELP 521
+ +T++L IG Y WSE +Q +L+ EL+ KRPL + + E +VL+T VIAE P
Sbjct: 406 LGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAP 465
Query: 522 ADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSVD 581
+ AY+ISMA PSDVLAV LL +E + + V PLFE ++D
Sbjct: 466 QGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNID 525
Query: 582 WYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXXX 641
WYR I GKQ VMIGYSDS KDAG +A+W Y+AQ+ LIK ++ GI+LT+FH
Sbjct: 526 WYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSI 585
Query: 642 XXXXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRP 701
P H A+LSQPP ++ G LRVT QGE+I +G + +L +T A LE + P
Sbjct: 586 GRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLP 645
Query: 702 PISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP 761
P PK WR +MDE++VI+ + YR V + FV YFR ATPE E G++ +GSRP+KR+P
Sbjct: 646 PPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRP 705
Query: 762 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVT 821
+GG+ESLRAIPWIFAWTQ R LP WLG G A + V++ ++ L+ M +WPFF
Sbjct: 706 TGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQS--ELEAMCRDWPFFSTR 763
Query: 822 IDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDP 881
+ ++EMVFAK + +A YDQ LV K LW G++LR EE ++L IA L+ P
Sbjct: 764 LGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHLMADLP 823
Query: 882 YLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLN 941
++ + ++LR+ Y LNV QA L R R E E +P
Sbjct: 824 WIAESIQLRNIYTDPLNVLQAELLHRSRQ---------------AEKEGQEP-------- 860
Query: 942 LSSEYAPGLEDTLILTMKGIAAGLQNTG 969
P +E L++T+ GIAAG++NTG
Sbjct: 861 -----DPRVEQALMVTIAGIAAGMRNTG 883
>pdb|3EJK|A Chain A, Crystal Structure Of Dtdp Sugar Isomerase (yp_390184.1)
From Desulfovibrio Desulfuricans G20 At 1.95 A
Resolution
Length = 174
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 268 GINERVPYNAPLIQFSSWMGGDRDGNP 294
G +ER P +AP I F SW G D G P
Sbjct: 147 GESERAPQDAPFIPF-SWAGADLSGTP 172
>pdb|2GU1|A Chain A, Crystal Structure Of A Zinc Containing Peptidase From
Vibrio Cholerae
Length = 361
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 653 LSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTM 712
+S P IH ++V G+ + F + + + LQ+ + L+H I P E M
Sbjct: 1 MSLQPKRIHYMVKV---GDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELM 57
Query: 713 MDEMAVIATEEYR-SIVFK 730
MD+M ++ Y SIV K
Sbjct: 58 MDDMGQLSRLIYHMSIVEK 76
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 81 GNVLTSLDPGDSIVIAKAFSHMLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDI 140
G L+ L P +A ++ + +++ H +IK++++ + DE T +DI
Sbjct: 210 GEYLSDLSPNSRKAVASIYNQL--------GIKLVHNFKIKEIREHEIVDEKGNTIPADI 261
Query: 141 EETFKRLVGELNKSPEEIFDALKNQTVDLV 170
G ALKN T DLV
Sbjct: 262 TILLPPYTGN---------PALKNSTPDLV 282
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%)
Query: 96 AKAFSHMLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSP 155
A +F + +++E + +R K L +E + ++GE+N P
Sbjct: 304 AHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKP 363
Query: 156 EEIFDALKNQTVDLVLTAHPTQSVRRSLLQKH 187
EE+F A DL+ +A S + L++ H
Sbjct: 364 EEVFLAQGTLRPDLIESASLVASGKAELIKTH 395
>pdb|1BML|C Chain C, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|D Chain D, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 362
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 914 HVKVRPHISREIM---ESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAG 964
HV+VRP+ + I +S V+ + LN ++ PGL+DT +L K +A G
Sbjct: 129 HVRVRPYKEKPIQNQAKSVDVEYTVQFTPLNPDDDFRPGLKDTKLL--KTLAIG 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,015,470
Number of Sequences: 62578
Number of extensions: 1158517
Number of successful extensions: 2942
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2916
Number of HSP's gapped (non-prelim): 19
length of query: 969
length of database: 14,973,337
effective HSP length: 108
effective length of query: 861
effective length of database: 8,214,913
effective search space: 7073040093
effective search space used: 7073040093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)