Query 002089
Match_columns 969
No_of_seqs 169 out of 825
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 16:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2352 Ppc Phosphoenolpyruvat 100.0 2E-265 3E-270 2268.5 93.0 886 28-969 5-910 (910)
2 PRK00009 phosphoenolpyruvate c 100.0 2E-246 5E-251 2208.3 99.6 889 26-969 3-911 (911)
3 PTZ00398 phosphoenolpyruvate c 100.0 7E-244 2E-248 2198.0 101.3 910 27-969 45-974 (974)
4 PF00311 PEPcase: Phosphoenolp 100.0 1E-233 2E-238 2084.1 64.7 774 164-969 1-794 (794)
5 PRK13655 phosphoenolpyruvate c 100.0 5.1E-82 1.1E-86 720.1 33.1 319 519-874 116-450 (494)
6 TIGR02751 PEPCase_arch phospho 100.0 8.1E-51 1.8E-55 464.7 29.2 299 504-842 92-427 (506)
7 PF14010 PEPcase_2: Phosphoeno 99.4 5.5E-12 1.2E-16 145.5 18.9 293 521-862 117-447 (491)
8 COG1892 Phosphoenolpyruvate ca 98.8 1.6E-07 3.5E-12 106.3 19.3 299 504-843 95-424 (488)
9 PF03328 HpcH_HpaI: HpcH/HpaI 96.3 0.012 2.7E-07 62.7 8.1 161 434-631 12-187 (221)
10 PRK10558 alpha-dehydro-beta-de 95.5 0.029 6.3E-07 61.7 7.1 157 437-634 34-216 (256)
11 TIGR03239 GarL 2-dehydro-3-deo 94.8 0.053 1.2E-06 59.4 6.3 157 437-634 27-209 (249)
12 TIGR01064 pyruv_kin pyruvate k 93.9 0.2 4.3E-06 59.9 9.0 112 514-647 177-295 (473)
13 PRK09206 pyruvate kinase; Prov 90.3 0.95 2.1E-05 54.1 8.7 99 514-633 178-276 (470)
14 PLN02623 pyruvate kinase 89.9 0.96 2.1E-05 55.1 8.5 88 527-633 294-381 (581)
15 PRK08187 pyruvate kinase; Vali 89.8 0.8 1.7E-05 55.0 7.7 97 525-633 325-423 (493)
16 PRK05826 pyruvate kinase; Prov 89.0 1.1 2.3E-05 53.7 7.9 91 525-633 187-277 (465)
17 PTZ00300 pyruvate kinase; Prov 88.7 2.4 5.1E-05 50.6 10.4 96 516-633 155-250 (454)
18 cd00288 Pyruvate_Kinase Pyruva 87.1 2 4.3E-05 51.6 8.5 106 503-633 172-277 (480)
19 PRK06247 pyruvate kinase; Prov 86.9 2 4.3E-05 51.5 8.3 85 527-633 189-273 (476)
20 TIGR01588 citE citrate lyase, 86.7 1.3 2.8E-05 49.7 6.3 97 525-631 86-189 (288)
21 PRK06354 pyruvate kinase; Prov 86.2 2.2 4.7E-05 52.5 8.4 106 503-633 176-282 (590)
22 TIGR02311 HpaI 2,4-dihydroxyhe 84.7 1.7 3.8E-05 47.7 6.1 97 526-633 86-209 (249)
23 PRK06739 pyruvate kinase; Vali 75.6 13 0.00029 43.0 9.4 99 514-633 171-269 (352)
24 PF00224 PK: Pyruvate kinase, 72.2 6.1 0.00013 45.6 5.6 106 503-633 174-279 (348)
25 PRK14725 pyruvate kinase; Prov 68.5 15 0.00033 45.2 8.1 108 528-648 448-555 (608)
26 COG1242 Predicted Fe-S oxidore 66.4 2.9 6.4E-05 46.5 1.4 17 637-654 37-53 (312)
27 PLN02765 pyruvate kinase 62.2 31 0.00067 42.1 9.0 87 528-632 224-310 (526)
28 PLN02461 Probable pyruvate kin 60.3 35 0.00076 41.5 9.0 88 527-633 210-297 (511)
29 PTZ00066 pyruvate kinase; Prov 57.2 36 0.00079 41.4 8.4 88 527-633 226-313 (513)
30 PF01373 Glyco_hydro_14: Glyco 55.2 12 0.00026 43.9 3.9 74 554-644 5-85 (402)
31 PF02585 PIG-L: GlcNAc-PI de-N 54.7 37 0.00079 32.8 6.7 56 587-652 65-120 (128)
32 COG2301 CitE Citrate lyase bet 52.3 11 0.00023 42.5 2.8 100 524-636 80-184 (283)
33 PLN02762 pyruvate kinase compl 50.6 70 0.0015 39.0 9.4 90 527-633 219-308 (509)
34 PF12897 Aminotran_MocR: Alani 47.0 14 0.00029 43.3 2.6 63 525-587 344-422 (425)
35 PF02526 GBP_repeat: Glycophor 46.9 15 0.00032 28.3 1.9 18 571-588 7-24 (38)
36 cd00727 malate_synt_A Malate s 45.6 44 0.00095 40.7 6.6 97 524-630 185-302 (511)
37 PRK09255 malate synthase; Vali 43.8 52 0.0011 40.3 6.9 95 527-630 208-323 (531)
38 cd00480 malate_synt Malate syn 43.7 37 0.0008 41.4 5.7 95 527-631 187-303 (511)
39 PRK06464 phosphoenolpyruvate s 41.3 43 0.00093 43.0 6.0 93 528-633 640-747 (795)
40 PLN00197 beta-amylase; Provisi 41.2 23 0.00049 43.1 3.3 33 610-645 162-197 (573)
41 PLN02803 beta-amylase 40.8 23 0.00051 42.8 3.3 33 610-645 142-177 (548)
42 TIGR01417 PTS_I_fam phosphoeno 39.9 43 0.00093 41.4 5.5 101 525-638 384-505 (565)
43 PLN02801 beta-amylase 39.6 25 0.00055 42.3 3.3 34 609-645 71-107 (517)
44 TIGR01344 malate_syn_A malate 38.1 61 0.0013 39.5 6.2 95 527-630 188-303 (511)
45 PLN02905 beta-amylase 37.9 27 0.00059 43.0 3.3 34 609-645 320-356 (702)
46 PLN02705 beta-amylase 36.8 30 0.00064 42.6 3.3 33 609-644 302-337 (681)
47 TIGR01418 PEP_synth phosphoeno 35.4 63 0.0014 41.5 6.2 93 528-633 633-740 (782)
48 PF04852 DUF640: Protein of un 33.7 76 0.0016 31.8 5.0 38 253-322 94-131 (132)
49 PLN02161 beta-amylase 33.4 41 0.00088 40.7 3.7 71 589-671 130-212 (531)
50 COG3294 HD supefamily hydrolas 33.0 37 0.00081 37.0 3.0 123 559-698 12-159 (269)
51 PRK10128 2-keto-3-deoxy-L-rham 31.7 36 0.00077 38.1 2.8 71 553-634 144-216 (267)
52 KOG3831 Uncharacterized conser 31.3 41 0.00089 34.3 2.8 48 562-623 61-108 (196)
53 TIGR01093 aroD 3-dehydroquinat 30.1 1.5E+02 0.0033 31.9 7.3 44 504-549 131-174 (228)
54 PRK10076 pyruvate formate lyas 28.7 3.6E+02 0.0078 29.1 9.7 139 401-560 17-167 (213)
55 PLN02389 biotin synthase 27.9 1.8E+02 0.004 34.2 7.9 45 506-550 211-255 (379)
56 TIGR03191 benz_CoA_bzdO benzoy 27.9 3.8E+02 0.0082 32.1 10.6 114 176-295 153-272 (430)
57 PF12133 Sars6: Open reading f 26.8 22 0.00048 30.1 0.1 44 435-483 15-58 (62)
58 PF05524 PEP-utilisers_N: PEP- 25.4 1.5E+02 0.0033 28.7 5.6 52 820-872 53-105 (123)
59 PF08671 SinI: Anti-repressor 20.5 1.3E+02 0.0028 22.8 3.1 24 140-164 5-28 (30)
No 1
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1.5e-265 Score=2268.51 Aligned_cols=886 Identities=43% Similarity=0.728 Sum_probs=831.0
Q ss_pred chhhhHHHHHHHHHHH-HHHHHhcChhHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHcCCChhhHHHHHHHHHHHhhhh
Q 002089 28 DDKLIEYDALLLDRFL-DILQDLHGEDLKETVQECYELAAEYEGKNDPSKFKELGNVLTSLDPGDSIVIAKAFSHMLNLA 106 (969)
Q Consensus 28 ~~~~l~~~~~ll~~ll-~vl~e~~G~~~~~~ve~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~yf~L~ 106 (969)
.+..++.|+.+||.+| ++|+++.|+++|++||+||+++++.|.+ +..+++.|.+.+.+|+.+++..|+||||+|++|+
T Consensus 5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~r~~-~~~~~~~L~~~l~~Ls~~~~~~vaRaFs~f~~L~ 83 (910)
T COG2352 5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKESRAG-DQADRQELEATLANLSNDEAIPVARAFSQFLLLA 83 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHcCCCHhhhhHHHHHHHHHhhhh
Confidence 5678999999999998 9999999999999999999999988876 4567889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCcccCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeccCCCcchhhhHHHH
Q 002089 107 NLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQK 186 (969)
Q Consensus 107 NiAEe~~r~r~~R~~~~~~~~~~~~~~~~~~gs~~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrtvL~~ 186 (969)
||||+.|+.++++. +...+ ...||+..++.+| ++.|++++++.++|+++.|+|||||||||++||||++|
T Consensus 84 NiaEd~~~~~r~~~-~~~~~--------~~~~sL~~~~~~L-k~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~ 153 (910)
T COG2352 84 NIAEDYHRIRRRQI-HEAAG--------DSDGSLAATLKKL-KEQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDK 153 (910)
T ss_pred hHHHHhhhHhhhhh-hhccC--------CCcchHHHHHHHH-HhcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHH
Confidence 99999999876653 32222 2349999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcchhhhccCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 002089 187 HARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKN 266 (969)
Q Consensus 187 ~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~gl~y~~~sl~~avP~~~~~l~~al~~ 266 (969)
+++|.++|.+++...+++. +++++++|++.|..+||||+||..||||.|||+||++||++|||++||+++++++.++++
T Consensus 154 ~~~I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~ 232 (910)
T COG2352 154 QREINRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQE 232 (910)
T ss_pred HHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777766 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCCHHHHHhHHH
Q 002089 267 IGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSM----WRCSDELRHRADV 342 (969)
Q Consensus 267 ~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~----~~~s~~l~~~~~~ 342 (969)
+++ ...|..++|++|||||||||||||||||+||++++..+|++|+++|.++|.+|+.+||| ++||++|+++++.
T Consensus 233 ~~~-~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~ 311 (910)
T COG2352 233 TFG-ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGE 311 (910)
T ss_pred hcc-cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhc
Confidence 864 34566678999999999999999999999999999999999999999999999999999 6899999997765
Q ss_pred hhhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCChHHhhhHHHHHHHHHHhc
Q 002089 343 LHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSC 422 (969)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~~ 422 (969)
.. +...+ +.+||||++|.+|+.||.+|..++.+...+.. ......+|.+++||++||..|++||.+|
T Consensus 312 ~~----d~~~~--------r~~EPYR~al~~i~~rL~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~ 378 (910)
T COG2352 312 SQ----DQSIR--------RADEPYRRALKYIRSRLMATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHAC 378 (910)
T ss_pred Cc----cccch--------hccccHHHHHHHHHHHHHHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 22 11111 45899999999999999999998766543221 2233558999999999999999999999
Q ss_pred CCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHhHhcCCCCCCCCCC
Q 002089 423 GDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIG-SYREWSEEKRQEWLLSELSGKRPLFGPDL 501 (969)
Q Consensus 423 ~~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~-~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~ 501 (969)
|++.+|+|.|.+++++|++|||||++|||||||++|++||+||++++|++ +|.+|+|++|++||.+||.++|||+++.+
T Consensus 379 G~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~ 458 (910)
T COG2352 379 GMEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRHEEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFW 458 (910)
T ss_pred CCceeccchHHHHHHHHHhcCceeeccccccccchHHHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhC----CCCchhhHHhhcCCChhhHHHHHHHHHHcCCC----CCCccccccCChHHHhcHHHH
Q 002089 502 PKTEEIADVLETFHVIAEL----PADNFGAYIISMATAPSDVLAVELLQRECHVK----QPLRVVPLFEKLADLEAAPAA 573 (969)
Q Consensus 502 ~~s~~~~e~l~~f~~i~~~----~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~----~~l~VvPLFETi~DL~~a~~i 573 (969)
++|+.|+++|+||++++++ |.++|++||||||+++||||||++|+||+|+. .+++|||||||||||+||+.|
T Consensus 459 ~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~v 538 (910)
T COG2352 459 QPSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDV 538 (910)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHH
Confidence 9999999999999999976 56789999999999999999999999999997 789999999999999999999
Q ss_pred HHHHhhcHHHHhhc---cCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhh
Q 002089 574 LARLFSVDWYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHL 650 (969)
Q Consensus 574 m~~ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt~~ 650 (969)
|++||+.|+||+.| +|.||||||||||||||||+||||++|+||++|+++|+++||+++|||||||||||||||+|.
T Consensus 539 m~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGGGPa~~ 618 (910)
T COG2352 539 MTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGGGPAYA 618 (910)
T ss_pred HHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCCchHHH
Confidence 99999999999999 359999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcccCceeeecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCC-CCCChhHHHHHHHHHHHHHHHHHHhhh
Q 002089 651 AILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPP-ISPKPEWRTMMDEMAVIATEEYRSIVF 729 (969)
Q Consensus 651 ailaqP~gsv~g~irvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~-~~~~~~~~~~m~~ls~~s~~aYr~lv~ 729 (969)
||+|||||||+|+||+|||||||+.|||+|++|.||||.+++|+|++++.|+ +.|+++|+.+||++|+.||++||+||+
T Consensus 619 AILsQP~gsv~g~iRiTEQGE~I~~Kyg~p~~A~~nLe~l~sAvLeAsllp~~~dp~~~~~~iMd~ls~~S~~~YR~lV~ 698 (910)
T COG2352 619 AILSQPPGSVKGRIRITEQGEMIAFKYGLPEVARRNLETLVSAVLEASLLPPKPDPKESWRAIMDELSDISCDAYRGLVR 698 (910)
T ss_pred HHhcCCCcccCCceEeehhHHHHHHhhCChHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999976 577788999999999999999999999
Q ss_pred cCCchhHHHHhhCchhHhhhCCCCCCCCccCCC-CCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCcCcHHHH
Q 002089 730 KEPRFVEYFRLATPELEYGRMNIGSRPSKRKPS-GGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHML 808 (969)
Q Consensus 730 ~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~-~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~~~~L 808 (969)
++|+|++||+++|||.||++||||||||||+.. ++++|||||||||||||+|+|||||||+|+|++.+++++|++++.|
T Consensus 699 ~~pdFvdyF~~~TPi~EIs~LniGSRPA~Rk~~~~~ie~LRAIPWVFSWsQnR~mLP~WyG~Gsal~~~i~~g~~~~~~L 778 (910)
T COG2352 699 ENPDFVDYFRQATPIQEISKLNIGSRPASRKPTTGGIESLRAIPWVFSWTQNRLMLPAWYGVGSALQRFIEEGPENLALL 778 (910)
T ss_pred CCCcHHHHHHhcCcHHHHhcCCCCCCCcCCCCCCCccccccccchhhhhhhhhhcchhhhhhhHHHHHHHHcCcchHHHH
Confidence 999999999999999999999999999999987 5599999999999999999999999999999999999998889999
Q ss_pred HHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHhCCCCcccCCchHHHHH
Q 002089 809 QEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLW-SFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRL 887 (969)
Q Consensus 809 ~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~-~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si 887 (969)
++||++||||+++|+||+|||+|+||.||.+|+++++|+++. ++|+.|++||+.|++.++.|+|+++||+++|+|++||
T Consensus 779 ~~m~~~WPFF~s~Lsn~emvlaKsd~~iA~~Y~qll~d~~~~~~lf~~i~~e~~~T~~~vl~I~~~~~LL~d~p~La~Si 858 (910)
T COG2352 779 RDMYQNWPFFSSRLSNMEMVLAKSDLWLAEHYAQLLVDPELGERLFDQIREEYQLTRKVVLAITGHDELLADNPWLAESI 858 (910)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhcCCHHHHHHH
Confidence 999999999999999999999999999999999999999954 8999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHHhcCCCCCCcccCcchhhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHHhhhcc
Q 002089 888 RLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQN 967 (969)
Q Consensus 888 ~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lllTIngIAAGlrN 967 (969)
.+||||+||||++|||||||+|+.+. . + .++.++++|++|||||||||||
T Consensus 859 ~lRn~Y~dPLn~LQvELLkR~R~~~~----------~--~------------------~~~~~er~i~lTInGIAaGlRN 908 (910)
T COG2352 859 ALRNPYLDPLNVLQVELLKRSRQSKR----------G--D------------------PDPEVERALLLTINGIAAGLRN 908 (910)
T ss_pred HHhccccChhHHHHHHHHHHHhhccc----------C--C------------------CCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999996431 0 1 1367999999999999999999
Q ss_pred CC
Q 002089 968 TG 969 (969)
Q Consensus 968 TG 969 (969)
||
T Consensus 909 TG 910 (910)
T COG2352 909 TG 910 (910)
T ss_pred CC
Confidence 99
No 2
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=100.00 E-value=2.5e-246 Score=2208.35 Aligned_cols=889 Identities=44% Similarity=0.742 Sum_probs=821.0
Q ss_pred CCchhhhHHHHHHHHHHH-HHHHHhcChhHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHcCCChhhHHHHHHHHHHHhh
Q 002089 26 SEDDKLIEYDALLLDRFL-DILQDLHGEDLKETVQECYELAAEYEGKNDPSKFKELGNVLTSLDPGDSIVIAKAFSHMLN 104 (969)
Q Consensus 26 ~~~~~~l~~~~~ll~~ll-~vl~e~~G~~~~~~ve~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~yf~ 104 (969)
...+.+|+.|+++||.+| +||++++|+++|++||+||.+++..+.+ ++...++|.+.+.+|+++++..|+||||+||+
T Consensus 3 ~~~~~~Lr~dv~~Lg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~r~~-~~~~~~~L~~~l~~L~~~e~~~v~raFs~~~~ 81 (911)
T PRK00009 3 NEKDAPLREDVRLLGRLLGDTIREQEGDEVFDLVETIRKLSKSSRRG-DDAAREELLKLLKNLSNDELLPVARAFSQFLN 81 (911)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 356778999999999998 9999999999999999999999986654 33445689999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhhhcCCCcccCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeccCCCcchhhhHH
Q 002089 105 LANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLL 184 (969)
Q Consensus 105 L~NiAEe~~r~r~~R~~~~~~~~~~~~~~~~~~gs~~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrtvL 184 (969)
|+|||||+|++|++|+ ....+ .+.+||+..++.+| +++|++++++++.|+++.|+|||||||||++|||||
T Consensus 82 L~NiAEe~~~~r~~r~-~~~~~-------~~~~~sl~~~~~~l-~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrtvL 152 (911)
T PRK00009 82 LANIAEDYHHIRRRRE-HASGS-------QPQPGSLAETLRRL-KAAGVSPEELARALEELDIEPVLTAHPTEVQRRTLL 152 (911)
T ss_pred HHHHHHHHHHHHHHHH-hhccC-------CCCCCcHHHHHHHH-HHcCCCHHHHHHHHhhCcceeeeecCCcccchHHHH
Confidence 9999999999998876 33222 14679999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcchhhhccCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002089 185 QKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTAL 264 (969)
Q Consensus 185 ~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~gl~y~~~sl~~avP~~~~~l~~al 264 (969)
++|++|+++|.++|+..+++.|+++++++|+++|++||||+++|++||||.||++||++||+++||++||.+|+++++++
T Consensus 153 ~~~~~I~~~L~~~d~~~~t~~e~~~~~~~l~~~i~~LW~T~eiR~~KPtv~DE~~~gl~y~~~~l~~aiP~~~~~l~~al 232 (911)
T PRK00009 153 DKQREIAALLRQLDDVDLTPRERAKIERRLRRLIAQLWQTDEIRQFRPTVVDEIKNGLAYYENSLWQAVPKLYRELEEAL 232 (911)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhCcchhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCCHHHHHhH
Q 002089 265 KNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSM----WRCSDELRHRA 340 (969)
Q Consensus 265 ~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~----~~~s~~l~~~~ 340 (969)
.+++. ...|..+++|+|||||||||||||||||+||++|+.++|+.|+++|++++++|.++||+ .+||++|.++.
T Consensus 233 ~~~~~-~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~S~~~~~~s~~l~~l~ 311 (911)
T PRK00009 233 EEHFG-LQLPLDAAPLRFGSWIGGDRDGNPNVTAEVTREVLLLQRWVALDLYLKELHALGSELSMSTRLVEVSPELRALA 311 (911)
T ss_pred HHhcC-ccCCCCCceeeeccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHh
Confidence 99753 34455568999999999999999999999999999999999999999999999999999 57999998855
Q ss_pred HHhhhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCChHHhhhHHHHHHHHHH
Q 002089 341 DVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLC 420 (969)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~ 420 (969)
+...+ . ..++++||||++|..|++||.+|..++..... +....+...+|.+++||++||..|++||+
T Consensus 312 ~~~~~----~--------~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~-~~~~~~~~~~Y~~~~ell~dL~~i~~SL~ 378 (911)
T PRK00009 312 GASPD----Q--------SPHRRDEPYRRALKGIRARLAATADWLEARLA-GEEAPPPADPYASAEELLADLDLIYQSLR 378 (911)
T ss_pred hcccc----c--------ccccCCCcHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 43211 1 12356899999999999999999987654332 11111123479999999999999999999
Q ss_pred hcCCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCCCCC
Q 002089 421 SCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPD 500 (969)
Q Consensus 421 ~~~~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~ 500 (969)
++|++.+|+|.|.+|||+|++||||||+|||||||++|++||+||++++|+++|.+|||++|++||.++|.++||+.++.
T Consensus 379 ~~~~~~~A~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~ 458 (911)
T PRK00009 379 ACGMGILANGRLLDLLRRVEVFGFHLARLDIRQESSRHEDAVAELTRYLGLGDYASLSEAEKQAFLLRELNSRRPLIPPN 458 (911)
T ss_pred hCCCccchhhHHHHHHHHHHhhCcccCCcccccChHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999879999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHH----HHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCC------CCCccccccCChHHHhcH
Q 002089 501 LPKTEEIADVLETFHV----IAELPADNFGAYIISMATAPSDVLAVELLQRECHVK------QPLRVVPLFEKLADLEAA 570 (969)
Q Consensus 501 ~~~s~~~~e~l~~f~~----i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~------~~l~VvPLFETi~DL~~a 570 (969)
..+|+++.+++++|.+ ++.+++++|+.||||||+++||||+|++|+|++|+. ++|+||||||||+||+||
T Consensus 459 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a 538 (911)
T PRK00009 459 WEYSELTSKELAEFLAARRLIAEFGAEAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNA 538 (911)
T ss_pred cccChhhHHHHHHHHHHHHHHHHhCchhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhH
Confidence 8786666655555554 556688999999999999999999999999999985 389999999999999999
Q ss_pred HHHHHHHhhcHHHHhhc---cCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcc
Q 002089 571 PAALARLFSVDWYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGP 647 (969)
Q Consensus 571 ~~im~~ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGP 647 (969)
+.||++||++|+||+|+ ++.|||||||||||||||+++|+|+||+||++|+++|++|||+++|||||||||||||||
T Consensus 539 ~~il~~l~~~p~yr~~l~~~~~~qeVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp 618 (911)
T PRK00009 539 ADVMRQLLSLPWYRGLIAGRGNLQEVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGP 618 (911)
T ss_pred HHHHHHHHcChHHHHHHhcCCCeEEEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCh
Confidence 99999999999999999 468999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCcccCceeeecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 002089 648 THLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSI 727 (969)
Q Consensus 648 t~~ailaqP~gsv~g~irvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~aYr~l 727 (969)
+|+||+||||||++|+||+|||||||++|||+|.+|.||||++++|+|++++.++++++++|+++|++||+.|+++||++
T Consensus 619 ~~~ai~~qp~g~~~g~iR~TeQGEvI~~kY~~~~~a~~nLE~~~~a~l~~~~~~~~~~~~~~~~~m~~ls~~s~~~Yr~l 698 (911)
T PRK00009 619 AYAAILSQPPGSVKGRIRVTEQGEVIRSKYGLPEVARRNLELLTAATLEASLLPPPEPKPEWREIMDELSDRSCKAYRGL 698 (911)
T ss_pred HHHHHHhCCCccccCceEEEeechhHHHhcCChHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987655567889999999999999999999
Q ss_pred hhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhC-cCcHH
Q 002089 728 VFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKD-IRNLH 806 (969)
Q Consensus 728 v~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~-~~~~~ 806 (969)
|+++|+|++||+++||+.||+.|||||||+||+++++++|||||||||||+|+|+++|||||+|+||+++++++ +++++
T Consensus 699 v~~~~~F~~yf~~~tP~~e~~~l~IGSRP~~R~~~~~i~~lRAIPwvfsW~Q~R~~lP~w~G~Gsal~~~~~~~~~~~~~ 778 (911)
T PRK00009 699 VRENPDFVDYFRAATPIQEIGKLNIGSRPASRKPTGGIESLRAIPWVFSWSQNRLMLPGWYGVGSALQAAIDDEPPGRLA 778 (911)
T ss_pred HhcCCCHHHHHHHhChHHHHHhccccCCCCCCCCCCCccccccchhhhhHHhhhccchHHhhHHHHHHHHHhccCcchHH
Confidence 99999999999999999999999999999999977899999999999999999999999999999999999763 24689
Q ss_pred HHHHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhHH-HHHHHHHHHHHHHHHHHHHhCCCCcccCCchHHH
Q 002089 807 MLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWS-FGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQ 885 (969)
Q Consensus 807 ~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~~-i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~l~~ 885 (969)
.||+||++||||+++|||++|+|+||||.||++|+++|+|++++. ||++|++||++|+++|++|||+++||+++|++++
T Consensus 779 ~L~~my~~WPFF~~~ldn~em~LaKaD~~Ia~~Y~~ll~d~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~l~~ 858 (911)
T PRK00009 779 LLREMYQDWPFFRTLLSNLEMVLAKADLNIAERYAQLLVDKELRPRLFERIRDELELTIKVVLAITGQDELLADNPWLAR 858 (911)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChHHHH
Confidence 999999999999999999999999999999999999999999885 9999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHhcCCCCCCcccCcchhhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHHhhh
Q 002089 886 RLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGL 965 (969)
Q Consensus 886 si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lllTIngIAAGl 965 (969)
||++|||||||||++||+||||+|+.+. + +++.+.++|++|||||||||
T Consensus 859 si~~R~pyvdpLn~lQvelL~r~R~~~~-------------~------------------~~~~l~~~l~~TInGIAaGl 907 (911)
T PRK00009 859 SIRLRNPYLDPLNHLQVELLKRLRAQEG-------------D------------------PDEEVERAIHLTINGIAAGL 907 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-------------C------------------CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997421 0 12669999999999999999
Q ss_pred ccCC
Q 002089 966 QNTG 969 (969)
Q Consensus 966 rNTG 969 (969)
||||
T Consensus 908 rNTG 911 (911)
T PRK00009 908 RNTG 911 (911)
T ss_pred ccCC
Confidence 9999
No 3
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=7.1e-244 Score=2197.98 Aligned_cols=910 Identities=42% Similarity=0.707 Sum_probs=830.5
Q ss_pred CchhhhHHHHHHHHHHH-HHHHHhcChhHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHcCCChhhHHHHHHHHHHHhhh
Q 002089 27 EDDKLIEYDALLLDRFL-DILQDLHGEDLKETVQECYELAAEYEGKNDPSKFKELGNVLTSLDPGDSIVIAKAFSHMLNL 105 (969)
Q Consensus 27 ~~~~~l~~~~~ll~~ll-~vl~e~~G~~~~~~ve~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~yf~L 105 (969)
..+.+|++|+++||.++ +||+++.|+++|++||++|.+++.++...++...++|.+.+.+|+++++..|+||||+||+|
T Consensus 45 ~~~~~L~~dv~~Lg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~v~raFs~~~~L 124 (974)
T PTZ00398 45 DFQEPLDLDIKALEFLLFDLVKDHWPEDGFEIIFDILKLSMKFSENEDSESFNTLWKKIYNLDSGYLGLVVRLFNHMCVL 124 (974)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34568999999999998 99999999999999999999999877654555678999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhhhcCCCcccCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeccCCCcchhhhHHH
Q 002089 106 ANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQ 185 (969)
Q Consensus 106 ~NiAEe~~r~r~~R~~~~~~~~~~~~~~~~~~gs~~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrtvL~ 185 (969)
+|+|||+|++|++|. ..+.+... ..+.+|||..++.+| +++|+++++|+++|+++.|+|||||||||++|||||+
T Consensus 125 ~NiAE~~~~~r~~r~-~~~~~~~~---~~~~~~sl~~~l~~L-~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrTvL~ 199 (974)
T PTZ00398 125 SNYAEWAHRIRRRRA-FERSFTDN---DRIFTESLKNTIEML-LQAGFDKEEIYKQLCNQEIDLVLTAHPTQAQRISVLK 199 (974)
T ss_pred HHHHHHHHHHHHHHH-hhcccccc---CCCccCcHHHHHHHH-HHcCCCHHHHHHHHhcCceeeeeccCCccccHHHHHH
Confidence 999999999988776 33211110 125689999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcchhhhccCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002089 186 KHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALK 265 (969)
Q Consensus 186 ~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~gl~y~~~sl~~avP~~~~~l~~al~ 265 (969)
||++|+++|.++|+..+++.|++++.++|+++|++||||||||+.||||.||++||++||++|||++||.+|+++++++.
T Consensus 200 ~~~~I~~~L~~ld~~~~t~~e~~~~~~~L~~~I~~LW~TdeiR~~KPtv~DE~~~gl~y~~~sl~~aiP~~~~~l~~al~ 279 (974)
T PTZ00398 200 NCQRLGELLLSLDNTDLTPFEIKDLKKNLQRLLAMLWKTDTIRRAKPTPLDEAQNLINTIENTIFDALPNFIRYIDNVLY 279 (974)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHhCcchhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCHHHHHhHHHhhh
Q 002089 266 NIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHR 345 (969)
Q Consensus 266 ~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~~~~s~~l~~~~~~~~~ 345 (969)
+++. +.+|..+++|+|||||||||||||||||+||++|+.++|+.|+++|+++|++|+++||++.||++|.++++...+
T Consensus 280 ~~~~-~~~~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~L~~~~~~~~~ 358 (974)
T PTZ00398 280 EYNL-DPLPPTKKLFTFSSWVGGDRDGNPFVTAEVTRQVVYFNRIRACELFIHMIEKLMYDLPLKSCTEKLKEYVDNLPD 358 (974)
T ss_pred HhcC-CCCCCCCCceeccCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhhhh
Confidence 9864 335556789999999999999999999999999999999999999999999999999999999999987655321
Q ss_pred -hh--------hhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCccCCCCChHHhhhHHHH
Q 002089 346 -SS--------KKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISD--IPEEAVFTNVEQFLEPLEL 414 (969)
Q Consensus 346 -~~--------~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~--~~~~~~y~~~~ell~dL~~ 414 (969)
.+ +...+. +.....++||||++|..|++||.+|..++...+.+.... ......|.+++||++||..
T Consensus 359 ~~~~~~~~~~~~~~~~~---~~~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~ 435 (974)
T PTZ00398 359 EISFYITDKDATYLLRE---FMGFIPEKELYRRALLHVRAKLIATRDYYKDLISNHSVDPEFRRELAYHSTDEILEPLIE 435 (974)
T ss_pred hhccccccchhhhhhhh---hcccCCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 00 000000 000112589999999999999999998875433211000 1123369999999999999
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCC
Q 002089 415 CYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKR 494 (969)
Q Consensus 415 i~~SL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~r 494 (969)
|++||++||+..+|+|.|.+|||+|++||||||+|||||||++|++||+||++++|+++|.+|||++|++||.++|.++|
T Consensus 436 i~~SL~~~g~~~lA~g~L~dlir~v~~FGfhLa~LDIRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~er~~~L~~eL~~~r 515 (974)
T PTZ00398 436 CYNSLEDVGNTILARGRLLDVIRQVKTFGLHLMKLDIRQESSKHEKAMDEICEYLGLGNYSELSEEEKQDFLLDILPSKR 515 (974)
T ss_pred HHHHHHHCCChhhHhhHHHHHHHHHHHhCccccccccccCcHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhcHH
Q 002089 495 PLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVK---QPLRVVPLFEKLADLEAAP 571 (969)
Q Consensus 495 pl~~~~~~~s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~---~~l~VvPLFETi~DL~~a~ 571 (969)
|++++..++|+++++||+||++|+++++++||+||||||+++||||+|++|+|++|+. ++|+|||||||++||+||+
T Consensus 516 pl~~~~~~~s~~~~evl~~f~~ia~~~~~alg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~ 595 (974)
T PTZ00398 516 PLIPHDLNWPSEVNEVLDTFKVCSELENEALGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSS 595 (974)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHccccccceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999998873 6899999999999999999
Q ss_pred HHHHHHhhcHHHHhhc----cCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcc
Q 002089 572 AALARLFSVDWYRNRI----NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGP 647 (969)
Q Consensus 572 ~im~~ll~~p~yr~~l----~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGP 647 (969)
.||++||++|+||+|+ +++|||||||||||||||+++|+|+||+||++|+++|++|||+++|||||||||||||||
T Consensus 596 ~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp 675 (974)
T PTZ00398 596 KTLEELFSNPWYLKHLKTVDNGIQEIMIGYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGP 675 (974)
T ss_pred HHHHHHHcCHHHHHHHhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCC
Confidence 9999999999999999 568999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCcccCceeeecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCCCCC-ChhHHHHHHHHHHHHHHHHHH
Q 002089 648 THLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISP-KPEWRTMMDEMAVIATEEYRS 726 (969)
Q Consensus 648 t~~ailaqP~gsv~g~irvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~-~~~~~~~m~~ls~~s~~aYr~ 726 (969)
+|.||+|||+||++|.+|+|||||||++|||+|++|.+|||++++|+|++++.+++.+ .++|+++|++||+.|+++||+
T Consensus 676 ~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky~~~~~a~~~le~~~aA~l~~~~~~~~~~~~~~~~~~m~~la~~s~~~Yr~ 755 (974)
T PTZ00398 676 QHLAILSQPPNTIKSYLRITIQGETITQNFGLKGICLRTWELYMSALLKCSLLADPIPVKQEWRELMDEMSEISMKEYRK 755 (974)
T ss_pred hHHHHhcCCCccccCeeEEeeechhhHHhcCChHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765555 678999999999999999999
Q ss_pred hhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCcCcHH
Q 002089 727 IVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLH 806 (969)
Q Consensus 727 lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~~~ 806 (969)
+|+++|+|++||+++||+.||+.|||||||+||+ ..+++|||||||||||+|+|++||||||+|+||+++++++ +++
T Consensus 756 lv~~~~~fv~yf~~atP~~e~~~L~iGSRP~~R~-~~~i~~LRAIPwvfaW~Q~r~~LP~w~G~G~al~~~~~~~--~~~ 832 (974)
T PTZ00398 756 VVRENPDFVPYFRSVTPEKEIGELNIGSRPSKRK-EGGIETLRAIPWVFAWTQNRLHLPVWLGLEDALEELKKKG--KLN 832 (974)
T ss_pred HHhcCCCHHHHHHHhChHHHHHhcccCCCCCCCC-CCCCCcccccchhhHHHhccCCchHHHhHHHHHHHHHhcC--hHH
Confidence 9999999999999999999999999999999997 5789999999999999999999999999999999998765 689
Q ss_pred HHHHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCchHHHH
Q 002089 807 MLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQR 886 (969)
Q Consensus 807 ~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~l~~s 886 (969)
.|++||++||||+++|||++|+|+||||.||++|+++++|+++++||++|++||++|+++|++|||+++||+++|++++|
T Consensus 833 ~L~~m~~~wpff~~~l~~~~m~LaKaDl~IA~~Y~~~l~~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~l~~S 912 (974)
T PTZ00398 833 LIADMYKNWPFCKSFFNLVSMVLLKTDVQITEEYNKMLVPEQLQYIGNLLRNKLKKTTNLILLVTKEKQLLDNDIVTKRS 912 (974)
T ss_pred HHHHHHHhCHHHHHHHhHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccChHHHHH
Confidence 99999999999999999999999999999999999899999888999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhcCCCCCCcccCcchhhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHHhhhc
Q 002089 887 LRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQ 966 (969)
Q Consensus 887 i~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lllTIngIAAGlr 966 (969)
|++|||||||||++|||||||+|..++.. . ++ -+.+.++.+.++++|++||||||||||
T Consensus 913 i~~R~pyvdpLn~lQvelL~r~R~~~~~~--------~--~~-----------~~~~~~~~~~l~~~l~~TInGIAaGlr 971 (974)
T PTZ00398 913 ILLRFKWVAPCNLIQIEALKRLRKINDST--------Y--DE-----------DTKNEIEDTSLEDALIISIKAIAAGMQ 971 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc--------c--cc-----------cccccccchHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999432100 0 00 000011236799999999999999999
Q ss_pred cCC
Q 002089 967 NTG 969 (969)
Q Consensus 967 NTG 969 (969)
|||
T Consensus 972 NTG 974 (974)
T PTZ00398 972 NTG 974 (974)
T ss_pred cCC
Confidence 999
No 4
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=100.00 E-value=9.8e-234 Score=2084.12 Aligned_cols=774 Identities=47% Similarity=0.776 Sum_probs=641.4
Q ss_pred cCceeEeeccCCCcchhhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcchhhhccCCChHHHHHHHHH
Q 002089 164 NQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMS 243 (969)
Q Consensus 164 ~~~i~pVlTAHPTEa~RrtvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~gl~ 243 (969)
++.|+|||||||||++|||||+++++|+.+|.++|+..+++.|+.+++++|+++|+.||||+|+|++||||.||++|||+
T Consensus 1 ~l~i~pVlTAHPTEa~RrtvL~~~~~I~~lL~~~d~~~lt~~e~~~~~~~L~~~I~~LWqT~eiR~~KPtv~DE~~~~L~ 80 (794)
T PF00311_consen 1 ELEIEPVLTAHPTEAKRRTVLDKHRRIAELLDQLDNPDLTPRERAELEERLRREITALWQTDEIRREKPTVLDEARNGLY 80 (794)
T ss_dssp --EEEEEEE--TT--SSCHHHHHHHHHHHHHHHCT-TT--HHHHHHHHHHHHHHHHHHHCS--C-SS---HHHHHHHHHH
T ss_pred CceEEEEeccCCCcCcHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCccccccCCChHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002089 244 YFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDL 323 (969)
Q Consensus 244 y~~~sl~~avP~~~~~l~~al~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L 323 (969)
||+++||++||.+|+++++++.+++++.. +..+++|+|||||||||||||||||+||++|+.++|+.|+++|++++++|
T Consensus 81 y~~~~l~~aiP~l~~~l~~al~~~~~~~~-~~~~~~i~fGSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~y~~~l~~L 159 (794)
T PF00311_consen 81 YFENSLFDAIPQLYRRLERALREHYPDPR-LPVPPFIRFGSWIGGDRDGNPFVTAEVTREALRLQREAALRLYLRELDEL 159 (794)
T ss_dssp HHCCTCCCCHHHHHHHHHHHHHCCTS-S----T--SEEEEE-TTTB-TT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcc-CCCCCeeEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875332 33478999999999999999999999999999999999999999999999
Q ss_pred HhhccC----ccCCHHHHHhHHHhhhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 002089 324 MFEMSM----WRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEE 399 (969)
Q Consensus 324 ~~~LS~----~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~ 399 (969)
.++||+ .++|++|.++++...+..+..... ...++++||||++|..|++||.+|+.......... .....
T Consensus 160 ~~~LS~S~~~~~~s~~L~~~l~~~~~~~~~~~~~----~~~~~~~EPYR~~l~~i~~RL~at~~~~~~~~~~~--~~~~~ 233 (794)
T PF00311_consen 160 RRELSLSDRRVPVSDELRARLEDDREALPEVAEE----FSRRNPDEPYRRKLRLIRARLEATLRRLEAGLSGR--ADPAA 233 (794)
T ss_dssp HHH-------S---HHHHHCCHCCCH---TT-SS----SS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHTS--SS-ST
T ss_pred HHHHHHhhcccccHHHHHHHHhhccccccccccc----ccccccccHHHHHHHHHHHHHHHHHHHHhhccccc--CCCcc
Confidence 999998 469999999776543333222211 13446799999999999999999998776554322 12235
Q ss_pred CCCCChHHhhhHHHHHHHHHHhcCCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHhcCCC-CCCCCC
Q 002089 400 AVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIG-SYREWS 478 (969)
Q Consensus 400 ~~y~~~~ell~dL~~i~~SL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~-~Y~~l~ 478 (969)
.+|.+++||++||..|++||+++|+..+|++.|.+||++|++|||||++|||||||++|++||++|++++|++ +|.+|+
T Consensus 234 ~~Y~~~~Ell~dL~~i~~SL~~~g~~~lA~~~L~~lir~V~~FGfhLa~LDIRQnS~~H~~av~el~~~~g~~~~Y~~l~ 313 (794)
T PF00311_consen 234 EAYRSAEELLADLRLIRDSLIANGAERLADGRLRDLIRQVETFGFHLASLDIRQNSTVHEEAVAELLRHAGIPDDYAELS 313 (794)
T ss_dssp TS--SHHHHHHHHHHHHHHHHHTT-HCCCTTHHHHHHHHHHHCTTTSSEEEEEEECHHHHHHHHHHHHCCTS---CCCS-
T ss_pred cCCCCHHHHHHHHHHHHHHHHHCCCchHHHhhHHHHHHHHhccCcceecccccccHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred HHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHhC----CCCchhhHHhhcCCChhhHHHHHHHHHHcCCC--
Q 002089 479 EEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAEL----PADNFGAYIISMATAPSDVLAVELLQRECHVK-- 552 (969)
Q Consensus 479 E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~----~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~-- 552 (969)
|++|+++|.++|+++||+.++..++|+++++++++|++++++ |+++|++||||||+++||||+|++|+|++|+.
T Consensus 314 e~~r~~~L~~eL~~~rpl~~~~~~~~~~~~~~l~~f~~~~~~~~~~g~~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~ 393 (794)
T PF00311_consen 314 EEERIALLTRELKSPRPLIPPFAPLSEETREVLDTFRVIAEIQKRYGPDAIGRYIISMTESASDVLEVLLLAKEAGLADG 393 (794)
T ss_dssp HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHHHHHHS-----CCCEEEEEECT--SCHHHHHHHHHHHCTT---S
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcchhhhHHHheeeCCCChHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999987 57999999999999999999999999999994
Q ss_pred ----CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhc---cCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHH
Q 002089 553 ----QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAK 625 (969)
Q Consensus 553 ----~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~ 625 (969)
++|+||||||||+||+|||+||++||++|+||+|| +++|||||||||||||||+++|||+||+||++|+++|+
T Consensus 394 ~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~ 473 (794)
T PF00311_consen 394 GDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVAR 473 (794)
T ss_dssp S---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999 46999999999999999999999999999999999999
Q ss_pred HhCCeEEEecCCCCCCCCCCcchhhhhhcCCCCcccCceeeecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCCCCC
Q 002089 626 QYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISP 705 (969)
Q Consensus 626 ~~gV~l~~FHGRGGsvgRGGGPt~~ailaqP~gsv~g~irvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~ 705 (969)
+|||+++|||||||||||||||+|+||+|||+||++|+||+|||||||++|||+|++|.||||++++|++++++.++..+
T Consensus 474 ~~gV~l~~FHGRGGsvgRGGGp~~~ai~aqP~gtv~g~ir~TeQGEvI~~ky~~~~~A~~~LE~~~~a~l~~~~~~~~~~ 553 (794)
T PF00311_consen 474 KHGVKLRFFHGRGGSVGRGGGPTHRAILAQPPGTVNGRIRITEQGEVISAKYGNPEIAQRNLEQLTAAVLEASLRPPPEP 553 (794)
T ss_dssp CCT-EEEEEEESSTCGGCTHHHHHHHHHTS-TTTTTTEEEEEEECHHHHHHHSSHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HcCCeEEEEeCCCCcccCCCChHHHHHHhCCCCccCCceEEeechHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999866555
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccc
Q 002089 706 K-PEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHL 784 (969)
Q Consensus 706 ~-~~~~~~m~~ls~~s~~aYr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~l 784 (969)
. ++|+++|++||+.|+++||+|||++|+|++||+++|||+||+.||||||||||++..+++|||||||||||||+|++|
T Consensus 554 ~~~~~~~~m~~ls~~s~~~Yr~Lv~~~p~F~~yf~~aTPi~ei~~lnIGSRPa~R~~~~~l~dLRAIPWVFsWtQ~R~~l 633 (794)
T PF00311_consen 554 PPPEWRELMEELSEASFKAYRALVYENPGFLEYFRQATPIDEIGKLNIGSRPAKRKGERSLEDLRAIPWVFSWTQSRFNL 633 (794)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHS-HHHHHHCS-SSS---------GCTS-CHHHHHHHHHTT--H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHhcCHHHHHHhccccCCCccCCCCCCCCcCCcCceeeeeecccccc
Confidence 5 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhCcCcHHHHHHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHhccCChh-hHHHHHHHHHHHHHH
Q 002089 785 PVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKD-LWSFGEKLRVNYEET 863 (969)
Q Consensus 785 PgWyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~-~~~i~~~I~~E~~~T 863 (969)
|||||||+||++++..++++++.||+||++||||+++|||++|+|+||||.||++|+++++|++ ..+||+.|++||++|
T Consensus 634 pgWyG~Gsal~~~~~~~~~~~~~L~~my~~wpfF~~~idn~~m~laK~d~~ia~~Y~~l~~~~~~~~~i~~~i~~E~~~T 713 (794)
T PF00311_consen 634 PGWYGVGSALEEFIQEDPGGLEQLQEMYREWPFFRTLIDNVEMSLAKADMDIAKRYAELVPDKELRQRIFEQIRDEYERT 713 (794)
T ss_dssp HHCTTHHHHHHHHHHCTTCCHHHHHHHHHH-HHHHHHHHHHHHHHCC--HHHHHHCHHHCS-CC-CHHHHHHHHHHHHHH
T ss_pred ceeecccHHHHHHHccCcchHHHHHHHHhcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888899999999999999999999999999999999999999999998 569999999999999
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCCCcccCcchhhhhhcccCCchhHHhhhccC
Q 002089 864 KGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLS 943 (969)
Q Consensus 864 ~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (969)
+++|++|||+++||+++|+|++||++|||||||||++||+||+|+|+.+++. ..+
T Consensus 714 ~~~~l~itg~~~ll~~~p~l~~si~~R~pyv~pLn~~Qv~lL~r~R~~~~~~-------------------------~~~ 768 (794)
T PF00311_consen 714 KEMLLAITGQKELLDNNPVLQRSIQLRNPYVDPLNYLQVELLKRLREGDDQQ-------------------------PAD 768 (794)
T ss_dssp HHHHHHHHT-SSTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----------------------------TT
T ss_pred HHHHHHHhCCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-------------------------ccC
Confidence 9999999999999999999999999999999999999999999999865200 001
Q ss_pred CCCCcchHHHHHHHHHHHHhhhccCC
Q 002089 944 SEYAPGLEDTLILTMKGIAAGLQNTG 969 (969)
Q Consensus 944 ~~~~~~l~~~lllTIngIAAGlrNTG 969 (969)
+++.+.+.++|++|||||||||||||
T Consensus 769 ~~~~~~~~~~l~~tingIAaglrnTG 794 (794)
T PF00311_consen 769 PEEDERLEDALLLTINGIAAGLRNTG 794 (794)
T ss_dssp -SS-CCHHHHHHHHHHHHHHHHT---
T ss_pred cccchHHHHHHHHHHHHHHHHcccCC
Confidence 22357799999999999999999999
No 5
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=5.1e-82 Score=720.13 Aligned_cols=319 Identities=21% Similarity=0.246 Sum_probs=276.4
Q ss_pred hCCCCchhhHHhhcCCChhhHHHHHHHHHHcC--CC----------CCCccccccCChHHHhcHHHHHHHHhhcHHHHhh
Q 002089 519 ELPADNFGAYIISMATAPSDVLAVELLQRECH--VK----------QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNR 586 (969)
Q Consensus 519 ~~~~~a~~~yIISmt~sasDvL~V~lL~ke~G--l~----------~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~ 586 (969)
..++++|+.||||||+++||||+|++|+|++| +. +.|+|||||||++||.||+.||++||++|.++.
T Consensus 116 ~~~~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~- 194 (494)
T PRK13655 116 SFYTQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHG- 194 (494)
T ss_pred hcCchhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcC-
Confidence 34588999999999999999999999999998 52 479999999999999999999999999976654
Q ss_pred ccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcc--hhhhhhcCCCCcccCce
Q 002089 587 INGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGP--THLAILSQPPDTIHGSL 664 (969)
Q Consensus 587 l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGP--t~~ailaqP~gsv~g~i 664 (969)
+.|||||||||||||||+++|+|++|+||++|.++|+++||++++|||||||||||||| ++++|++||+ |.+
T Consensus 195 --~~qeVmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~fhGrGg~~~RGGgpp~~~~ail~q~~----g~~ 268 (494)
T PRK13655 195 --KYLRVFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPILGVGSLPFRGHLSPENLENVLEEYP----GVY 268 (494)
T ss_pred --CeeEEEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCCChHHHHHHHhCCC----CCe
Confidence 78999999999999999999999999999999999999999999999999999999998 8899999998 559
Q ss_pred eeecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhhCch
Q 002089 665 RVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPE 744 (969)
Q Consensus 665 rvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~aYr~lv~~~p~F~~yF~~aTPi 744 (969)
|+|||| +.||+.|. ..+...+.+++++...++..++++|+++|+.|++.|+++||++|+++|+|++||+++||.
T Consensus 269 r~TeQg---a~rY~~~~---e~~~~av~~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr~~V~~~~~fv~yf~~~tP~ 342 (494)
T PRK13655 269 TFTVQS---AFRYDYPY---EEVKKAIEEINEKLIAPPRILSEEDKEELLEIIEKYSERYQSQIEKLADTINRVAKLIPK 342 (494)
T ss_pred EEEecc---ccccCCCH---HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHcCcH
Confidence 999999 49999996 222333344447777677777889999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCcCcHHHHHHHHhhCchHHHHHHH
Q 002089 745 LEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDL 824 (969)
Q Consensus 745 ~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn 824 (969)
.+++.|||||||+||+. +++++||||||||||+|+| ++|+|||+|+||+.+++++ ++.|.++|..
T Consensus 343 ~r~r~L~iGsrp~~R~~-~gie~lRAIpwvfAw~q~r-~~P~wlG~g~aL~~~~~~~---ld~l~~~yp~---------- 407 (494)
T PRK13655 343 RRDRKLHIGLFGYSRSV-GGVSLPRAISFTGALYSIG-LPPELIGAGRLLELAKEDD---LDILLENYPN---------- 407 (494)
T ss_pred HHHhhccccCCCCCCCC-CCCCCCCccCchhhhhhCC-CChHHHhHHHHHHHHHHhH---HHHHHHHhhh----------
Confidence 99999999999999985 7799999999999999999 9999999999999998744 8999998866
Q ss_pred HHHHHHhccHHHHHHHHhccCChhhH-HH-HHHHHHHHHHHHHHHHHHhCCC
Q 002089 825 VEMVFAKGNHKIAALYDQLLVSKDLW-SF-GEKLRVNYEETKGLLLQIAGHK 874 (969)
Q Consensus 825 ~em~LaKaD~~Ia~~Y~~l~~d~~~~-~i-~~~I~~E~~~T~~~vl~itg~~ 874 (969)
.|.|+.-+.+|.+. +.. .+ -+.+.+|.....+.+..+.|-+
T Consensus 408 -----l~~dl~~a~~y~n~----~~~~~~~~~~~~~~~~~di~~~~~~~~~~ 450 (494)
T PRK13655 408 -----LKKDLEFAARFFNP----EVAEKLIDEETIAEIKEDIDEAKEILGLE 450 (494)
T ss_pred -----HHHHHHHHHHhcCH----HHHHHhccchhHHHHHHHHHHHHHHhCCC
Confidence 66677777777642 211 11 1233456666666677776653
No 6
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=100.00 E-value=8.1e-51 Score=464.74 Aligned_cols=299 Identities=22% Similarity=0.281 Sum_probs=241.1
Q ss_pred CHHHHHHHHHHHHHH-------h-CCCC--chhhHHhhcCCChhhHHHHHHHHHHcCC---------------------C
Q 002089 504 TEEIADVLETFHVIA-------E-LPAD--NFGAYIISMATAPSDVLAVELLQRECHV---------------------K 552 (969)
Q Consensus 504 s~~~~e~l~~f~~i~-------~-~~~~--a~~~yIISmt~sasDvL~V~lL~ke~Gl---------------------~ 552 (969)
..+.+-+++++..|- . .+.. .|--.|||||+++||||+|+.|+|++|+ .
T Consensus 92 ~~e~k~l~etl~si~~~~d~a~~~~~~~~~pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~ 171 (506)
T TIGR02751 92 GAEAKLLLETLESIPRNYDVAREFYDERIAPIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKP 171 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCC
Confidence 344555555555553 2 2445 7778899999999999999999999985 2
Q ss_pred CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhc-cCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeE
Q 002089 553 QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRI-NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKL 631 (969)
Q Consensus 553 ~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l-~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l 631 (969)
+.|+|||||||++||.||++||+++|+ ++ .+.|+||||||||+||+|+++|+|++|+||++|.++|+++||++
T Consensus 172 ~~i~VIPLFEt~~dL~~a~~Il~~~l~------~~~~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l 245 (506)
T TIGR02751 172 KKIRVIPLIEDKDSLLNADEIVKEYAE------AHEPEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISI 245 (506)
T ss_pred CCcCeecCcCCHHHHHhHHHHHHHHHH------hcCcCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 478999999999999999999999998 44 56799999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCc-chhhh-hhcCCCCcccCceeeecchhHHHhhhCChhHHHHHHHHHHHHHHH---ccCCCCCCCC
Q 002089 632 TMFHGRGGTVGRGGG-PTHLA-ILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLE---HGMRPPISPK 706 (969)
Q Consensus 632 ~~FHGRGGsvgRGGG-Pt~~a-ilaqP~gsv~g~irvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~---~sl~~~~~~~ 706 (969)
++|||||||+||||| |++.+ |++||| |.+|+|||| ++||++|. |++++|++. +...+++.+.
T Consensus 246 ~pfhGrGgspfRGGg~P~n~a~il~qpp----G~~t~TeQs---afRYd~p~------e~v~~Av~~~~~a~~~~~~~~~ 312 (506)
T TIGR02751 246 YPIIGAGSLPFRGHLSPENIERVLDEYP----GVYTFTVQS---AFKYDYPR------EEVVAAIRRINEKLPNAPPILI 312 (506)
T ss_pred EEEeecCCCCcCCCCChhhHHHHHhcCC----CceEEeeec---hhhcCCCH------HHHHHHHHHHHhcccCCCCCCC
Confidence 999999999999999 99999 999999 789999999 99999999 999999994 4444555567
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccc
Q 002089 707 PEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPV 786 (969)
Q Consensus 707 ~~~~~~m~~ls~~s~~aYr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPg 786 (969)
++|+++|+.+++.|+++||++|..--+.+......-|=.==-.+.||-===+|. .++++=-|||-++.|| -+=-+-|-
T Consensus 313 ~e~~e~m~~ia~~s~~~Yr~~V~~la~~in~ia~~iP~rR~RklhiGlfgYsR~-~~~~~lPRAI~Ft~al-YSiG~PPe 390 (506)
T TIGR02751 313 DEEEEIIVEIIEIYAKRYQKIIEKLAPTINRIASYIPKRRDRKLHVGLFGYSRS-VGGVSLPRAIKFTGAL-YSIGLPPE 390 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccCcccccC-CCCCCCCchhhhhhhh-hhcCCChH
Confidence 889999999999999999999965544444443333333222233321111221 1246778999999999 67778899
Q ss_pred hhhHHHHHHHHHHhCcCcHHHHHHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHh
Q 002089 787 WLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQ 842 (969)
Q Consensus 787 WyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~ 842 (969)
..|+| +|.++.+++ ++.|.+.|.. .|.|+.-|.+|.+
T Consensus 391 liG~~-~L~~~~~~~---l~~l~~~yp~---------------l~~dl~~a~~y~n 427 (506)
T TIGR02751 391 LIGIG-SLSELDEDD---LEVIKELYPN---------------LRSDLSFAARYLN 427 (506)
T ss_pred HhChh-hhhhcchhH---HHHHHHHhhh---------------HHHHHHHHHHhcC
Confidence 99999 899876544 7888887766 5667777777765
No 7
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=99.41 E-value=5.5e-12 Score=145.47 Aligned_cols=293 Identities=23% Similarity=0.233 Sum_probs=194.5
Q ss_pred CCCchhhHHhhcCCChhhHHHHHHHHH----------------HcCCC---CCCccccccCChHHHhcHHHHHHHHhhcH
Q 002089 521 PADNFGAYIISMATAPSDVLAVELLQR----------------ECHVK---QPLRVVPLFEKLADLEAAPAALARLFSVD 581 (969)
Q Consensus 521 ~~~a~~~yIISmt~sasDvL~V~lL~k----------------e~Gl~---~~l~VvPLFETi~DL~~a~~im~~ll~~p 581 (969)
+...|--.|.-||+|+.+|..|+-..+ +.+.. ..++|+||||+.+.+-|+++|++.++
T Consensus 117 ~~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~--- 193 (491)
T PF14010_consen 117 DVQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYL--- 193 (491)
T ss_dssp SS-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHH---
T ss_pred cCcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHH---
Confidence 456777889999999999999965543 22222 58999999999999999999999988
Q ss_pred HHHhhc---cCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcc--hhhhhhcCC
Q 002089 582 WYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGP--THLAILSQP 656 (969)
Q Consensus 582 ~yr~~l---~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGP--t~~ailaqP 656 (969)
++. -..|.|+||-|||+--.|.++|..+.=-|-.+|.++.++.||++--.=|-|.++-|||=. ....++.+=
T Consensus 194 ---~~~g~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~GS~PFRG~l~p~~~~~~~~EY 270 (491)
T PF14010_consen 194 ---KDKGRDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGVGSPPFRGGLSPPNVERVLEEY 270 (491)
T ss_dssp ---HHTT---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT---TTGHHHHHHHT
T ss_pred ---HHhcCCchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeeccCCCCcCCCCChHhHHHHHHhc
Confidence 333 357999999999999999999999999999999999999999999999999999999943 222334443
Q ss_pred CCcccCceeeecchhHHHhhhCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhcCCchhH
Q 002089 657 PDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVE 736 (969)
Q Consensus 657 ~gsv~g~irvTEQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~aYr~lv~~~p~F~~ 736 (969)
.|--.+|.|-- .||..|.--..+.=..+ .......+...+.+..+.+-.+.+.+.+.|++.|..--+
T Consensus 271 ----~gv~T~TIQSA---frYD~p~~~v~~ai~~l---~~~~~~~p~~~~~ee~~~~~~ii~~~s~~Y~~~i~~la~--- 337 (491)
T PF14010_consen 271 ----PGVYTFTIQSA---FRYDYPYEEVIKAIEKL---NEAPRKKPRIIDEEEEEILLEIIEKYSAEYRSQIEKLAP--- 337 (491)
T ss_dssp ----TT-SEEEE-HH---HHHTTHHHHHHHHHHHH---HHGGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ----CCeeEEEeeeh---hhcCCCHHHHHHHHHHH---HhcccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34578999985 99999876554433211 121112333445666778999999999999998844333
Q ss_pred HHHhhCchhHhhhCCCCCCCCccCCC------------CCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCcCc
Q 002089 737 YFRLATPELEYGRMNIGSRPSKRKPS------------GGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRN 804 (969)
Q Consensus 737 yF~~aTPi~ei~~lnIGSRPakR~~~------------~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~ 804 (969)
-|++++.+= |.+|... +++.=-|||.++.|| -+=-.-|...|+|+.++...+ .
T Consensus 338 ------~In~va~~v----P~rR~RklhiGlfgYsR~~~~~~LPRAI~Ftaal-YSiGlPPEllg~~~ll~l~~~----~ 402 (491)
T PF14010_consen 338 ------TINRVARYV----PKRRDRKLHIGLFGYSRSVGGVNLPRAITFTAAL-YSIGLPPELLGLGRLLELSKE----E 402 (491)
T ss_dssp ------HHHHHHTTS-------S-B----------EEE--HE---HHHHHHHH-HHTT--GGGTTHHHHHHHHHH----H
T ss_pred ------HHHHHHHhC----CchhhHHhhhcccccccccCCccCcchhhhhhhH-HhcCCCHHHhchHHHHHHhHH----H
Confidence 344555433 4444321 234567999999999 677788999999999975542 4
Q ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHhccCChh-h-HHHHHHHHHHHHH
Q 002089 805 LHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKD-L-WSFGEKLRVNYEE 862 (969)
Q Consensus 805 ~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~-~-~~i~~~I~~E~~~ 862 (969)
++.|.+.|.. -|.|+.-|..|.+.-.... . ..++..|++..+-
T Consensus 403 l~~l~~~yp~---------------l~~Dl~~a~~y~n~~~~~~~~~~~~~~~v~ed~~~ 447 (491)
T PF14010_consen 403 LDVLLEYYPN---------------LKEDLEFAARYFNPEVAELYLPEEAVKEVKEDIDY 447 (491)
T ss_dssp HHHHHHHSTT---------------HHHHHHHHHTT--SSTTTTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---------------HHHHHHHHHHhcChhhhhhcccHHHHHHHHHHHHH
Confidence 8888888887 7889999999887432221 1 2455555554443
No 8
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.83 E-value=1.6e-07 Score=106.30 Aligned_cols=299 Identities=22% Similarity=0.236 Sum_probs=209.2
Q ss_pred CHHHHHHHHHHHHHHhC---------CCCchhhHHhhcCCChhhHHHHHHHHH---------HcCCC---------C-CC
Q 002089 504 TEEIADVLETFHVIAEL---------PADNFGAYIISMATAPSDVLAVELLQR---------ECHVK---------Q-PL 555 (969)
Q Consensus 504 s~~~~e~l~~f~~i~~~---------~~~a~~~yIISmt~sasDvL~V~lL~k---------e~Gl~---------~-~l 555 (969)
..+.+-.++|+.+|+.. ....|--.|.-||+|+..++.|.-..+ +.|.. + -|
T Consensus 95 ~~erkll~e~l~~i~~s~d~a~~f~~d~~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~I 174 (488)
T COG1892 95 NAERKLLLETLESIARSYDYARVFYGDVAPIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLI 174 (488)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHhhccccccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHH
Confidence 45556666777777642 134666779999999999999965433 22331 2 58
Q ss_pred ccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEec
Q 002089 556 RVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFH 635 (969)
Q Consensus 556 ~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FH 635 (969)
.|+||||+++.|.++..|...... .+.-..|.|-||-||++-.-|.++|....=+|-.+|.++-++-||++--.-
T Consensus 175 eviPl~e~~~~ll~a~~i~~~y~~-----g~~~e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i~PI~ 249 (488)
T COG1892 175 EVIPLFEDRESLLKAALIVGEYAE-----GRDPEYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPIYPIL 249 (488)
T ss_pred hhhHhHhhHHHHHHHHHHHHHHHh-----cCCchhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCccccee
Confidence 899999999999999988776321 111346889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcchhh--hhhcCCCCcccCceeeecchhHHHhhhCCh-hHHHHHHHHHHHHHHHccCCCCCCCChhHHHH
Q 002089 636 GRGGTVGRGGGPTHL--AILSQPPDTIHGSLRVTVQGEVIEQSFGEE-HLCFRTLQRFTAATLEHGMRPPISPKPEWRTM 712 (969)
Q Consensus 636 GRGGsvgRGGGPt~~--ailaqP~gsv~g~irvTEQGEvI~~kyg~~-~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~ 712 (969)
|-|..+-|||---+. ..+.+=+| --..|.|.- .||..+ ..+.+-.+.+-+. .++. ..+...+.
T Consensus 250 G~Gs~PFRG~l~P~n~e~~~~EY~g----v~T~TvQSa---fkYD~~~~~v~~~i~~i~~~------~~~~-~s~~~~e~ 315 (488)
T COG1892 250 GVGSLPFRGHLRPENAENVLEEYAG----VYTYTVQSA---FKYDHEYGDVVKAIERIKSV------KRER-LSAYEEEE 315 (488)
T ss_pred cCCCCCcCCCCChhhhHHHHHHcCC----ceEEEEeec---ccccCCHHHHHHHHHHHHhh------cccc-cccccHHH
Confidence 999999999754433 35555444 478999985 899876 3444444442221 1111 23333445
Q ss_pred HHHHHHHHHHHHHHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHH
Q 002089 713 MDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGA 792 (969)
Q Consensus 713 m~~ls~~s~~aYr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGs 792 (969)
.-.+...-++.||..|..--+-+.=....-|=.---+|.||.+==+|.- +.++=-|||-++.|| -+=-+-|...|+|.
T Consensus 316 ~~~~i~~~~~~Y~~~i~~la~~Inrla~~iP~rR~RklHvGlfGYsR~~-g~~~LPRAI~fTasl-YsiG~PPeLlG~~~ 393 (488)
T COG1892 316 LLAVITIYEEEYRRQIRILAGTINRLADRIPDRRDRKLHVGLFGYSRSI-GELSLPRAIKFTASL-YSIGVPPELLGTGA 393 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhcCcccccccC-CcccCcchheeehhh-hhcCCCHHHhcchh
Confidence 5666777788999876332222222222233333334667766555542 356778999999999 56677899999998
Q ss_pred HHHHHHHhCcCcHHHHHHHHhhCchHHHHHHHHHHHHHhccHHHHHHHHhc
Q 002089 793 AFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQL 843 (969)
Q Consensus 793 AL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l 843 (969)
... +++ .++.+.+.|.. ..-|++.|.+|.+.
T Consensus 394 ls~---~d~--~~~~v~e~yp~---------------~~~dL~fA~ry~~~ 424 (488)
T COG1892 394 LSN---DDA--DLDVVSEYYPN---------------LVEDLEFAARYFNP 424 (488)
T ss_pred ccc---ccc--hHHHHHHHhhh---------------HHHHHHHHHHhcCH
Confidence 875 111 47788887776 56778888888764
No 9
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=96.27 E-value=0.012 Score=62.75 Aligned_cols=161 Identities=15% Similarity=0.212 Sum_probs=106.7
Q ss_pred HHHHHHHHhCCccccccccccch------HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhc--CCCCCCCCCCCCCH
Q 002089 434 DFLRQVSTFGLSLVRLDIRQESD------RHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELS--GKRPLFGPDLPKTE 505 (969)
Q Consensus 434 ~lir~v~~FGfhla~LDiRQ~S~------~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~--~~rpl~~~~~~~s~ 505 (969)
.++..+...||..+-+|+ +|+. .-...+.+++.. +. ..+ ...+++..+..-+.
T Consensus 12 ~~~~~a~~~g~D~vilDl-Ed~~~~~~K~~ar~~~~~~~~~-----------------~~-~~~~~~~~~~VRvn~~~~~ 72 (221)
T PF03328_consen 12 KMLEKAAASGADFVILDL-EDGVPPDEKDEAREDLAEALRS-----------------IR-AARAAGSEIIVRVNSLDSP 72 (221)
T ss_dssp HHHHHHHTTCSSEEEEES-STTSSGGGHHHHHHHHHHHHHH-----------------HH-HHTTSSSEEEEE-SSTTCH
T ss_pred HHHHHHHhcCCCEEEEeC-cccCCcccchhhHHHHHHHHHh-----------------hc-ccccccccceecCCCCCcc
Confidence 466777888999999998 6766 111111111110 00 011 12233332333344
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcC--C---CCCCccccccCChHHHhcHHHHHHHHhhc
Q 002089 506 EIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECH--V---KQPLRVVPLFEKLADLEAAPAALARLFSV 580 (969)
Q Consensus 506 ~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~G--l---~~~l~VvPLFETi~DL~~a~~im~~ll~~ 580 (969)
...+-|. +...+.+ ..+|.|++++.|+..+.-+++..- . ...+.|+|+.||.+.+.|+++|+ +.
T Consensus 73 ~~~~Dl~----~l~~g~~---gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~----a~ 141 (221)
T PF03328_consen 73 HIERDLE----ALDAGAD---GIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIA----AV 141 (221)
T ss_dssp HHHHHHH----HHHTTSS---EEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHH----TS
T ss_pred hhhhhhh----hcccCCC---eeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhc----cc
Confidence 4444344 3344444 469999999999999999988652 2 24689999999999999999998 22
Q ss_pred HHHHhhccCeeEEEEeeccCCcchhHHh--HHHHHHHHHHHHHHHHHHhCCeE
Q 002089 581 DWYRNRINGKQEVMIGYSDSGKDAGRFS--AAWQLYKAQEELIKVAKQYGIKL 631 (969)
Q Consensus 581 p~yr~~l~~~QeVMlGYSDS~KDgG~la--s~W~Ly~Aq~~L~~va~~~gV~l 631 (969)
.+.--+++|..|=+.|-|.-. ...+++.|..+++..|+++|+..
T Consensus 142 -------~~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~ 187 (221)
T PF03328_consen 142 -------PGVDGLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPA 187 (221)
T ss_dssp -------TTEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEE
T ss_pred -------CCeeEEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCe
Confidence 367889999999999988864 56789999999999999999843
No 10
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.51 E-value=0.029 Score=61.71 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=100.4
Q ss_pred HHHHHhCCccccccccccchHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHH
Q 002089 437 RQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHV 516 (969)
Q Consensus 437 r~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~ 516 (969)
..+..-||.++-+|. ||+..-.+.+..++..+.. .+..|++.....-....+.+|
T Consensus 34 e~~a~~G~D~v~iD~-EHg~~~~~~~~~~i~a~~~-------------------~g~~~lVRvp~~~~~~i~r~L----- 88 (256)
T PRK10558 34 EVLGLAGFDWLVLDG-EHAPNDVSTFIPQLMALKG-------------------SASAPVVRVPTNEPVIIKRLL----- 88 (256)
T ss_pred HHHHhcCCCEEEEcc-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHh-----
Confidence 345567999999998 8888777777776654321 111222221111111111111
Q ss_pred HHhCCCCchhhHHhhcCCChhhHHHHHHHHHHc--CC----------------------CCCCccccccCChHHHhcHHH
Q 002089 517 IAELPADNFGAYIISMATAPSDVLAVELLQREC--HV----------------------KQPLRVVPLFEKLADLEAAPA 572 (969)
Q Consensus 517 i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~--Gl----------------------~~~l~VvPLFETi~DL~~a~~ 572 (969)
+.|..++ |+.|.+++.++-++.-.+|.. |. ...+.|+|+.||.+.++|+++
T Consensus 89 --D~Ga~gi---ivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~e 163 (256)
T PRK10558 89 --DIGFYNF---LIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDA 163 (256)
T ss_pred --CCCCCee---eecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHH
Confidence 2233322 666666666666665555542 10 136779999999999999999
Q ss_pred HHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHh--HHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002089 573 ALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFS--AAWQLYKAQEELIKVAKQYGIKLTMF 634 (969)
Q Consensus 573 im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--s~W~Ly~Aq~~L~~va~~~gV~l~~F 634 (969)
|+.. .+.--||+|..|=+.+-|... ..=++..+..++...|+++|+.+-+|
T Consensus 164 I~av-----------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~ 216 (256)
T PRK10558 164 IAAT-----------EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL 216 (256)
T ss_pred HhCC-----------CCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc
Confidence 9863 367789999999888877542 12268889999999999999987544
No 11
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.76 E-value=0.053 Score=59.45 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=99.4
Q ss_pred HHHHHhCCccccccccccchHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHH
Q 002089 437 RQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHV 516 (969)
Q Consensus 437 r~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~ 516 (969)
..+-.-||.++-+|. ||+..-.+.+..++..+.. ....|++..........+.+|
T Consensus 27 e~~a~~G~D~v~iD~-EHg~~~~~~~~~~~~a~~~-------------------~g~~~~VRvp~~~~~~i~r~L----- 81 (249)
T TIGR03239 27 EVLGLAGFDWLLLDG-EHAPNDVLTFIPQLMALKG-------------------SASAPVVRPPWNEPVIIKRLL----- 81 (249)
T ss_pred HHHHhcCCCEEEEec-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHh-----
Confidence 344567899999998 8888877777777654321 112223221111111111111
Q ss_pred HHhCCCCchhhHHhhcCCChhhHHHHHHHHHHc--CC----------------------CCCCccccccCChHHHhcHHH
Q 002089 517 IAELPADNFGAYIISMATAPSDVLAVELLQREC--HV----------------------KQPLRVVPLFEKLADLEAAPA 572 (969)
Q Consensus 517 i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~--Gl----------------------~~~l~VvPLFETi~DL~~a~~ 572 (969)
+.|..+ .|+.|.+++.|+-++.-.+|.. |. ...+.|+|+.||.+.++|+++
T Consensus 82 --D~Ga~g---IivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~e 156 (249)
T TIGR03239 82 --DIGFYN---FLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDE 156 (249)
T ss_pred --cCCCCE---EEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHH
Confidence 223322 2566666666666555544432 10 135779999999999999999
Q ss_pred HHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHh--HHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002089 573 ALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFS--AAWQLYKAQEELIKVAKQYGIKLTMF 634 (969)
Q Consensus 573 im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--s~W~Ly~Aq~~L~~va~~~gV~l~~F 634 (969)
|+.. .+.--||+|-.|=+.+-|... ..=++..|..++...|+++|+.+-+|
T Consensus 157 I~av-----------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~ 209 (249)
T TIGR03239 157 IAAV-----------DGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL 209 (249)
T ss_pred HhCC-----------CCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 9853 356789999998887777532 12268889999999999999988554
No 12
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=93.88 E-value=0.2 Score=59.93 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=88.1
Q ss_pred HHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEE
Q 002089 514 FHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEV 593 (969)
Q Consensus 514 f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeV 593 (969)
++.+...+ +....+|+++++.||-.+--+..++|. ..+.|+|+.||.+.++|+.+|+.. . | -|
T Consensus 177 l~~~~~~~---~d~I~lskV~sa~dv~~l~~~l~~~~~-~~~~Iia~IEt~~av~nl~eI~~~--~-d----------gi 239 (473)
T TIGR01064 177 LKFGVEQG---VDMVAASFVRTAEDVLEVREVLGEKGA-KDVKIIAKIENQEGVDNIDEIAEA--S-D----------GI 239 (473)
T ss_pred HHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHhcCC-CCceEEEEECCHHHHHhHHHHHhh--C-C----------cE
Confidence 34444444 344789999999999999777776663 257899999999999999999976 1 1 69
Q ss_pred EEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecC-------CCCCCCCCCcc
Q 002089 594 MIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHG-------RGGTVGRGGGP 647 (969)
Q Consensus 594 MlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHG-------RGGsvgRGGGP 647 (969)
|+|-.|=+.+-|. =++..+|.+++..|+++|+.+.. ++ .-..+-|.-..
T Consensus 240 ~iG~gDL~~~lg~----~~l~~~~~~ii~aaraag~pvi~-atqmLeSM~~~p~PTRAe~~ 295 (473)
T TIGR01064 240 MVARGDLGVEIPA----EEVPIAQKKMIRKCNRAGKPVIT-ATQMLDSMIKNPRPTRAEVS 295 (473)
T ss_pred EEchHHHHhhcCc----HHHHHHHHHHHHHHHHcCCCEEE-EChhhhhhhcCCCCCcccHH
Confidence 9999999999993 36788999999999999998664 45 55566666543
No 13
>PRK09206 pyruvate kinase; Provisional
Probab=90.26 E-value=0.95 Score=54.06 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=81.7
Q ss_pred HHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEE
Q 002089 514 FHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEV 593 (969)
Q Consensus 514 f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeV 593 (969)
++...+.+-+. +-.|+.++++||.++--+..+.|. ..+.|++-.||.+.++|.++|++. .=-|
T Consensus 178 i~f~~~~~vD~---ia~SFVr~~~Dv~~~r~~l~~~~~-~~~~iiaKIEt~eav~nldeIl~~-------------~DgI 240 (470)
T PRK09206 178 LIFGCEQGVDF---VAASFIRKRSDVLEIREHLKAHGG-ENIQIISKIENQEGLNNFDEILEA-------------SDGI 240 (470)
T ss_pred HHHHHHcCCCE---EEEcCCCCHHHHHHHHHHHHHcCC-CCceEEEEECCHHHHHhHHHHHHh-------------CCEE
Confidence 34444444343 446999999999999888777763 357899999999999999999998 2369
Q ss_pred EEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 594 MIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 594 MlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
|+|-.|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 241 mVaRGDLgvelg----~e~vp~~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 241 MVARGDLGVEIP----VEEVIFAQKMMIEKCNRARKVVIT 276 (470)
T ss_pred EECcchhhhhcC----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999988 788889999999999999998775
No 14
>PLN02623 pyruvate kinase
Probab=89.93 E-value=0.96 Score=55.10 Aligned_cols=88 Identities=16% Similarity=0.262 Sum_probs=77.5
Q ss_pred hHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhH
Q 002089 527 AYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGR 606 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 606 (969)
-+-+|+.++++||.++--+.+.+|- .+.|++-.||.+.++|.++|++. .=-||||-.|=+-.-|.
T Consensus 294 ~ialSFVr~a~DV~~~r~~l~~~~~--~~~iiakIEt~eaVeNldeIl~g-------------~DgImIgrgDLgvelg~ 358 (581)
T PLN02623 294 FYAVSFVKDAQVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIITA-------------SDGAMVARGDLGAELPI 358 (581)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCC--cceEEEEECCHHHHHhHHHHHHh-------------CCEEEECcchhhhhcCc
Confidence 3567999999999999888887764 57899999999999999999993 23699999999999998
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 607 FSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 607 las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
..+-.+|+++.+.|+++|+.+..
T Consensus 359 ----~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 359 ----EEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred ----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 78889999999999999998863
No 15
>PRK08187 pyruvate kinase; Validated
Probab=89.83 E-value=0.8 Score=54.99 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=77.4
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHHcCC--CCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCc
Q 002089 525 FGAYIISMATAPSDVLAVELLQRECHV--KQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGK 602 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke~Gl--~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~K 602 (969)
+....+|+++++.||..+.-+..+.|. ...+.|+|..||...++|.++|+..--. ...--||+|--|=+-
T Consensus 325 vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~--------~~v~GImiARGDLgv 396 (493)
T PRK08187 325 ADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAG--------RQPFGVMIARGDLAV 396 (493)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCc--------CCCcEEEEEchHhhh
Confidence 344789999999999999877777652 2478899999999999999999965211 123469999999998
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 603 DAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 603 DgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
+-|+-. +-..|++++..|+.+|+.+..
T Consensus 397 Eig~e~----~p~~Qk~II~~craagkpvI~ 423 (493)
T PRK08187 397 EIGFER----LAEMQEEILWLCEAAHVPVIW 423 (493)
T ss_pred hcCccc----ChHHHHHHHHHHHHhCCCeEE
Confidence 888633 444599999999999999875
No 16
>PRK05826 pyruvate kinase; Provisional
Probab=89.04 E-value=1.1 Score=53.68 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=77.7
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcch
Q 002089 525 FGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDA 604 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDg 604 (969)
+.-.++||.+++.|+-++--+..++|- ..+.|++-.||.+.++|.++|++. .=-||+|-.|=+-+-
T Consensus 187 ~d~I~~sfV~saedv~~l~~~l~~~~~-~~~~iiakIEt~eav~nldeI~~~-------------~DgImIgrgDLg~el 252 (465)
T PRK05826 187 VDYIAVSFVRSAEDVEEARRLLREAGC-PHAKIIAKIERAEAVDNIDEIIEA-------------SDGIMVARGDLGVEI 252 (465)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCC-cCceEEEEEcCHHHHHhHHHHHHH-------------cCEEEECcchhhhhc
Confidence 445678999999999999877777663 257899999999999999999998 136999999999998
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 605 GRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 605 G~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
| .-.+..+|+++.+.|+++|..+.+
T Consensus 253 g----~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 253 P----DEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred C----cHhHHHHHHHHHHHHHHcCCCEEE
Confidence 8 457899999999999999987654
No 17
>PTZ00300 pyruvate kinase; Provisional
Probab=88.71 E-value=2.4 Score=50.60 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=80.7
Q ss_pred HHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEE
Q 002089 516 VIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMI 595 (969)
Q Consensus 516 ~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMl 595 (969)
...+.+-+. ..+||.+++.|+-++.-++...|- .+.|+.-.||.+.++|.++|++. .=-||+
T Consensus 155 ~ald~gvd~---I~~SfVrsaeDv~~vr~~l~~~~~--~~~IiaKIEt~eav~nldeI~~~-------------~DgImV 216 (454)
T PTZ00300 155 FGVEQGVDM---IFASFIRSAEQVGEVRKALGAKGG--DIMIICKIENHQGVQNIDSIIEE-------------SDGIMV 216 (454)
T ss_pred HHHHCCCCE---EEECCCCCHHHHHHHHHHHHhcCC--CceEEEEECCHHHHHhHHHHHHh-------------CCEEEE
Confidence 344555544 468999999999999888876663 67899999999999999999954 346999
Q ss_pred eeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 596 GYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 596 GYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
|--|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 217 aRGDLgvei~----~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 217 ARGDLGVEIP----AEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred ecchhhhhcC----hHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9999988888 788899999999999999998765
No 18
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=87.07 E-value=2 Score=51.64 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHH
Q 002089 503 KTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDW 582 (969)
Q Consensus 503 ~s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~ 582 (969)
+++.-.+-++ ...+.+ +--+-+|+.++++||-++--+.+..| ..+.|++-.||.+.++|.++|++.
T Consensus 172 ltekD~~di~---f~~~~~---vD~ia~SFV~~~~di~~~r~~l~~~~--~~~~iiakIEt~~av~nldeI~~~------ 237 (480)
T cd00288 172 LSEKDKADLR---FGVEQG---VDMIFASFVRKASDVLEIREVLGEKG--KDIKIIAKIENQEGVNNFDEILEA------ 237 (480)
T ss_pred CCHHHHHHHH---HHHHcC---CCEEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh------
Confidence 3444444443 333443 33456799999999999988877765 367799999999999999999998
Q ss_pred HHhhccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 583 YRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 583 yr~~l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
.=.||+|-.|=+-.-|. =.+-.+|+++.+.|+++|+.+..
T Consensus 238 -------~DgImIargDLg~e~g~----~~v~~~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 238 -------SDGIMVARGDLGVEIPA----EEVFLAQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred -------cCEEEECcchhhhhcCh----HHHHHHHHHHHHHHHHcCCCEEE
Confidence 13699999999888883 67788999999999999997754
No 19
>PRK06247 pyruvate kinase; Provisional
Probab=86.93 E-value=2 Score=51.49 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=74.3
Q ss_pred hHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhH
Q 002089 527 AYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGR 606 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 606 (969)
-+-+|+.++++||.++--+... .+.|++-.||.+.++|.++|++. .=.||+|-.|=+-.-|+
T Consensus 189 ~ia~SFVr~a~Di~~~r~~l~~-----~~~iiaKIEt~eav~nldeI~~~-------------~DgImVaRGDLgve~g~ 250 (476)
T PRK06247 189 WVALSFVQRPEDVEEVRKIIGG-----RVPVMAKIEKPQAIDRLEAIVEA-------------SDAIMVARGDLGVEVPL 250 (476)
T ss_pred EEEECCCCCHHHHHHHHHHhhh-----cCeEEEEECCHHHHHhHHHHHHH-------------cCEEEEccchhccccCH
Confidence 3457999999999999766632 57799999999999999999998 24699999999999998
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 607 FSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 607 las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
..+-.+|+++.+.|+++|..+..
T Consensus 251 ----~~v~~~qk~ii~~~~~~gkpvI~ 273 (476)
T PRK06247 251 ----EQVPLIQKRIIRAARRAGKPVVV 273 (476)
T ss_pred ----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 88999999999999999998775
No 20
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=86.68 E-value=1.3 Score=49.73 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=75.5
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHH----cCCC-CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeecc
Q 002089 525 FGAYIISMATAPSDVLAVELLQRE----CHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSD 599 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke----~Gl~-~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSD 599 (969)
+..+++.|++++.|+-.+..+.+. .|.. ..+.|+|+.||...+.|+.+|... . .+.--+++|-.|
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a---~-------~rv~~l~~G~~D 155 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARA---S-------KRLMGIALGAED 155 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhc---C-------CcceEEEeCHHH
Confidence 345999999999999999756554 3332 367899999999999999999842 1 245669999988
Q ss_pred CCcchhHHh--HHHHHHHHHHHHHHHHHHhCCeE
Q 002089 600 SGKDAGRFS--AAWQLYKAQEELIKVAKQYGIKL 631 (969)
Q Consensus 600 S~KDgG~la--s~W~Ly~Aq~~L~~va~~~gV~l 631 (969)
=+-|-|.-. ..-+++.+...++..|+.+|+..
T Consensus 156 ls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~ 189 (288)
T TIGR01588 156 YVTDMKTSRSPDGTELFYARCAILHAARAAGIAA 189 (288)
T ss_pred HHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCc
Confidence 777777543 22369999999999999999875
No 21
>PRK06354 pyruvate kinase; Provisional
Probab=86.24 E-value=2.2 Score=52.53 Aligned_cols=106 Identities=25% Similarity=0.253 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHH-cCCCCCCccccccCChHHHhcHHHHHHHHhhcH
Q 002089 503 KTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRE-CHVKQPLRVVPLFEKLADLEAAPAALARLFSVD 581 (969)
Q Consensus 503 ~s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke-~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p 581 (969)
+++.-.+-+ +...+.+-+ -+-+|+.++++||.++--+..+ .| ..+.|+.-.||.+.|+|.++|++.
T Consensus 176 ltekD~~di---~f~~~~~vD---~ia~SFVr~~~dv~~~r~~l~~~~~--~~~~iiaKIEt~eav~nldeI~~~----- 242 (590)
T PRK06354 176 ITEKDREDL---IFGLEQGVD---WIALSFVRNPSDVLEIRELIEEHNG--KHIPIIAKIEKQEAIDNIDAILEL----- 242 (590)
T ss_pred CCHHHHHHH---HHHHHcCCC---EEEEcCCCCHHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-----
Confidence 344444444 333344433 3457999999999999777744 34 367899999999999999999987
Q ss_pred HHHhhccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 582 WYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 582 ~yr~~l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
.=-||+|-.|=+-.-| ...+..+|+++.+.|+++|..+..
T Consensus 243 --------~DgImVaRGDLgve~g----~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 243 --------CDGLMVARGDLGVEIP----AEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred --------cCEEEEccchhhcccC----cHHHHHHHHHHHHHHHHcCCCEEE
Confidence 2359999999999988 778888999999999999998764
No 22
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=84.73 E-value=1.7 Score=47.67 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=71.1
Q ss_pred hhHHhhcCCChhhHHHHHHHHHHc--CCC-----------------------CCCccccccCChHHHhcHHHHHHHHhhc
Q 002089 526 GAYIISMATAPSDVLAVELLQREC--HVK-----------------------QPLRVVPLFEKLADLEAAPAALARLFSV 580 (969)
Q Consensus 526 ~~yIISmt~sasDvL~V~lL~ke~--Gl~-----------------------~~l~VvPLFETi~DL~~a~~im~~ll~~ 580 (969)
...||.|.+|+.|+-++.-.+|+. |.. ..+-|+|+.||.+.++|+++|+..
T Consensus 86 ~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~---- 161 (249)
T TIGR02311 86 QTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAV---- 161 (249)
T ss_pred CEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCC----
Confidence 445677777777777776666643 211 145699999999999999999962
Q ss_pred HHHHhhccCeeEEEEeeccCCcchhHHh-H-HHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 581 DWYRNRINGKQEVMIGYSDSGKDAGRFS-A-AWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 581 p~yr~~l~~~QeVMlGYSDS~KDgG~la-s-~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
.+.=-||+|-+|=+.+-|... . .-++..|-+++.+.|.++|+..-+
T Consensus 162 -------~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi 209 (249)
T TIGR02311 162 -------EGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGI 209 (249)
T ss_pred -------CCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceee
Confidence 245679999999888888633 2 236777888899999999997743
No 23
>PRK06739 pyruvate kinase; Validated
Probab=75.60 E-value=13 Score=43.04 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=79.3
Q ss_pred HHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEE
Q 002089 514 FHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEV 593 (969)
Q Consensus 514 f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeV 593 (969)
++.....+-+.+ -+|+.++++||.++--+.++.|. ..+.|+.=.||.+.++|-++|++.- --|
T Consensus 171 i~f~~~~~vD~i---a~SFVr~~~Dv~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eI~~~s-------------Dgi 233 (352)
T PRK06739 171 IQFLLEEDVDFI---ACSFVRKPSHIKEIRDFIQQYKE-TSPNLIAKIETMEAIENFQDICKEA-------------DGI 233 (352)
T ss_pred HHHHHHcCCCEE---EECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhc-------------CEE
Confidence 333445544433 35999999999999988888775 4678999999999999999999972 469
Q ss_pred EEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 594 MIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 594 MlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
|+.--|=+-. ..-+.+-..|+++.+.|+++|..+..
T Consensus 234 mVARGDLgve----~~~e~vp~~Qk~Ii~~c~~~gkPvIv 269 (352)
T PRK06739 234 MIARGDLGVE----LPYQFIPLLQKMMIQECNRTNTYVIT 269 (352)
T ss_pred EEECcccccc----cCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9987765544 55689999999999999999998774
No 24
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=72.19 E-value=6.1 Score=45.63 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHH
Q 002089 503 KTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDW 582 (969)
Q Consensus 503 ~s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~ 582 (969)
+++.-.+-+ +...+.+ +.-+.+|+.++++||.++--+.++.| .++.|+.=.||.+.++|-++|++.-
T Consensus 174 LtekD~~di---~fa~~~~---vD~IalSFVrsa~dV~~lr~~l~~~~--~~~~iiaKIE~~~~v~nl~eI~~~s----- 240 (348)
T PF00224_consen 174 LTEKDKEDI---KFAVENG---VDFIALSFVRSAEDVKELRKILGEKG--KDIKIIAKIETKEAVENLDEILEAS----- 240 (348)
T ss_dssp S-HHHHHHH---HHHHHTT----SEEEETTE-SHHHHHHHHHHHTCTT--TTSEEEEEE-SHHHHHTHHHHHHHS-----
T ss_pred CCHHHHHHH---HHHHHcC---CCEEEecCCCchHHHHHHHHHhhhcC--cccceeeccccHHHHhhHHHHhhhc-----
Confidence 344444444 3343443 33456799999999999999988877 5789999999999999999999872
Q ss_pred HHhhccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 583 YRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 583 yr~~l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
=-||+.--| =|.=..-..+..+|+.+...|+++|..+.+
T Consensus 241 --------DgimiaRGD----Lg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ 279 (348)
T PF00224_consen 241 --------DGIMIARGD----LGVEIPFEKVPIIQKRIIKKCNAAGKPVIV 279 (348)
T ss_dssp --------SEEEEEHHH----HHHHSTGGGHHHHHHHHHHHHHHHT-EEEE
T ss_pred --------CeEEEecCC----cceeeeHHHHHHHHHHHHHHHHHhCCCeee
Confidence 368997665 455555568999999999999999998876
No 25
>PRK14725 pyruvate kinase; Provisional
Probab=68.54 E-value=15 Score=45.18 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=81.9
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHH
Q 002089 528 YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRF 607 (969)
Q Consensus 528 yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 607 (969)
+-+|+.++++||.++.-+.++.|. ..+.|+.=.||.+.++|-++|+..-..++ .--|||.-=|=+=.-|+
T Consensus 448 ValSFVrs~~DV~~lr~~L~~~g~-~~~~IiaKIEt~~av~nL~eIl~~am~~~--------~DGIMIARGDLgvEi~~- 517 (608)
T PRK14725 448 VALSFVRSPEDVRLLLDALEKLGA-DDLGVVLKIETRRAFENLPRILLEAMRHP--------RFGVMIARGDLAVEVGF- 517 (608)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhhccCC--------CcEEEEECCccccccCH-
Confidence 346999999999999888887765 45789999999999999999998743332 24589887766655554
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcch
Q 002089 608 SAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPT 648 (969)
Q Consensus 608 as~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt 648 (969)
..+...|+++...|+++|+.+..===-=.|.-..+=||
T Consensus 518 ---e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PT 555 (608)
T PRK14725 518 ---ERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPS 555 (608)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCC
Confidence 78999999999999999998886322223333344454
No 26
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=66.43 E-value=2.9 Score=46.50 Aligned_cols=17 Identities=47% Similarity=0.837 Sum_probs=11.3
Q ss_pred CCCCCCCCCcchhhhhhc
Q 002089 637 RGGTVGRGGGPTHLAILS 654 (969)
Q Consensus 637 RGGsvgRGGGPt~~aila 654 (969)
|-||+|||| -|+=.-.+
T Consensus 37 RDGti~rGG-CtFC~~~g 53 (312)
T COG1242 37 RDGTIGRGG-CTFCSVAG 53 (312)
T ss_pred CCCcccCCc-eeeecCCC
Confidence 789999998 44433333
No 27
>PLN02765 pyruvate kinase
Probab=62.18 E-value=31 Score=42.07 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=72.9
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHH
Q 002089 528 YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRF 607 (969)
Q Consensus 528 yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 607 (969)
.-+|+.++++||.++--+.++.|. ..+.|+.=.||.+.++|-++|++.- --||+.--|=+ .=
T Consensus 224 ia~SFVr~a~DI~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eIi~~s-------------DgIMVARGDLG----vE 285 (526)
T PLN02765 224 LSLSYTRHAEDVREAREFLSSLGL-SQTQIFAKIENVEGLTHFDEILQEA-------------DGIILSRGNLG----ID 285 (526)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHHHHHhc-------------CEEEEecCccc----cc
Confidence 347999999999999988888774 3678999999999999999999873 46999877654 44
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEE
Q 002089 608 SAAWQLYKAQEELIKVAKQYGIKLT 632 (969)
Q Consensus 608 as~W~Ly~Aq~~L~~va~~~gV~l~ 632 (969)
..-..+-.+|+++.+.|+++|..+.
T Consensus 286 ip~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 286 LPPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred cCHHHhHHHHHHHHHHHHHhCCCeE
Confidence 5568899999999999999997654
No 28
>PLN02461 Probable pyruvate kinase
Probab=60.32 E-value=35 Score=41.55 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=74.2
Q ss_pred hHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhH
Q 002089 527 AYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGR 606 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 606 (969)
-+-+|+.++++||.++--+....|- .+.|+.=.||.+.++|-++|++. ---||+..-|=+=.-|
T Consensus 210 ~ia~SFVr~a~DV~~~r~~l~~~~~--~~~IiAKIE~~~av~nl~eIi~~-------------sDgIMVARGDLGvEip- 273 (511)
T PLN02461 210 FIALSFVRKGSDLVEVRKVLGEHAK--SILLISKVENQEGLDNFDDILAE-------------SDAFMVARGDLGMEIP- 273 (511)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCC--CCCEEEEECCHHHHHHHHHHHHh-------------cCEEEEeccccccccC-
Confidence 3457999999999999888876654 67899999999999999999998 3469999887665555
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 607 FSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 607 las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
-..+..+|+++.+.|.++|..+..
T Consensus 274 ---~e~vp~~Qk~II~~c~~~gkPVIv 297 (511)
T PLN02461 274 ---IEKIFLAQKMMIYKCNLAGKPVVT 297 (511)
T ss_pred ---HHHhHHHHHHHHHHHHHcCCCeEE
Confidence 467899999999999999988764
No 29
>PTZ00066 pyruvate kinase; Provisional
Probab=57.15 E-value=36 Score=41.40 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=74.3
Q ss_pred hHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhH
Q 002089 527 AYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGR 606 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 606 (969)
-+-+|+.++++||.++--+.++.|- .+.|+.=.||.+.++|-++|++. ---||+..-|=+=.
T Consensus 226 ~IalSFVr~a~DI~~~r~~l~~~g~--~~~IiAKIE~~~av~NldeIl~~-------------sDGIMVARGDLGvE--- 287 (513)
T PTZ00066 226 FIALSFVQSADDVRLCRQLLGERGR--HIKIIPKIENIEGLINFDEILAE-------------SDGIMVARGDLGME--- 287 (513)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCC--CceEEEEECCHHHHHHHHHHHHh-------------cCEEEEEccccccc---
Confidence 3557999999999999888888775 67889999999999999999997 35699988765544
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 607 FSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 607 las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
..-..+..+|+++.+.|.++|..+..
T Consensus 288 -ip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 288 -IPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred -cChHHcchHHHHHHHHHHHhCCCEEE
Confidence 45678999999999999999987764
No 30
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=55.20 E-value=12 Score=43.93 Aligned_cols=74 Identities=32% Similarity=0.512 Sum_probs=42.3
Q ss_pred CCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEe----eccCCcchhHHhHHHHHHHHHHHHHHHHHHhCC
Q 002089 554 PLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIG----YSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGI 629 (969)
Q Consensus 554 ~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlG----YSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV 629 (969)
||++|.--.+...|++.=..|+. .|+--||+= -=.+..+ -.=+|+-|+ +|.++++++|.
T Consensus 5 PLd~v~~~~~~~~~~~~L~~LK~-----------~GV~GVmvdvWWGiVE~~~p---~~ydWs~Y~---~l~~~vr~~GL 67 (402)
T PF01373_consen 5 PLDTVTDDNDWNALEAQLRALKS-----------AGVDGVMVDVWWGIVEGEGP---QQYDWSGYR---ELFEMVRDAGL 67 (402)
T ss_dssp -TTSSCTTSECHHHHHHHHHHHH-----------TTEEEEEEEEEHHHHTGSST---TB---HHHH---HHHHHHHHTT-
T ss_pred eeeeecCCCcHHHHHHHHHHHHH-----------cCCcEEEEEeEeeeeccCCC---CccCcHHHH---HHHHHHHHcCC
Confidence 56666655555544443333333 367778873 2222222 234798886 68888999999
Q ss_pred eEEE---ecCCCCCCCCC
Q 002089 630 KLTM---FHGRGGTVGRG 644 (969)
Q Consensus 630 ~l~~---FHGRGGsvgRG 644 (969)
|+.. ||+.||.||-=
T Consensus 68 k~~~vmsfH~cGgNvgD~ 85 (402)
T PF01373_consen 68 KLQVVMSFHQCGGNVGDD 85 (402)
T ss_dssp EEEEEEE-S-BSSSTTSS
T ss_pred eEEEEEeeecCCCCCCCc
Confidence 9877 99999999853
No 31
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=54.72 E-value=37 Score=32.83 Aligned_cols=56 Identities=13% Similarity=0.341 Sum_probs=44.8
Q ss_pred ccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhhhh
Q 002089 587 INGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAI 652 (969)
Q Consensus 587 l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt~~ai 652 (969)
+|-.+-+.++|.|+.-+. |......+.|.++.+++.-.++|-|-..|. |.|-|.++
T Consensus 65 lGv~~~~~l~~~D~~~~~------~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~----gH~DH~~~ 120 (128)
T PF02585_consen 65 LGVENVIFLDFPDGQLPG------WSWEELVRDLEDLIREFRPDVVFTPDPDDG----GHPDHRAV 120 (128)
T ss_dssp CT-EEEEEEEECTTSCTC------HHHHHHHHHHHHHHHHH-ESEEEEE-STTS-----SHHHHHH
T ss_pred cCCceEEEeecCCCCccc------ccHHHHHHHHHHHHHHcCCCEEEECCCCCC----CcHHHHHH
Confidence 344588999999999887 999999999999999998888888876666 88988865
No 32
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=52.30 E-value=11 Score=42.46 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=75.7
Q ss_pred chhhHHhhcCCChhhHHHHHHHHHHcCCCCCCc-cccccCChHHHhcHHHHHHHHhhcHHHHhhccCe-eEEEEeeccCC
Q 002089 524 NFGAYIISMATAPSDVLAVELLQRECHVKQPLR-VVPLFEKLADLEAAPAALARLFSVDWYRNRINGK-QEVMIGYSDSG 601 (969)
Q Consensus 524 a~~~yIISmt~sasDvL~V~lL~ke~Gl~~~l~-VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~-QeVMlGYSDS~ 601 (969)
++...++.++++++|+..+-.+.....-.+++. +..++||..-+.|+..|... .++ ..+++|=.|=.
T Consensus 80 ~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a-----------~~~l~~l~~Ga~Dl~ 148 (283)
T COG2301 80 AVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAA-----------SGRLVGLAFGANDLA 148 (283)
T ss_pred CCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcC-----------ccceeeeEecHHHHH
Confidence 367788999999999999977766544333444 89999999999999999876 234 66778877766
Q ss_pred cchhHHhHH---HHHHHHHHHHHHHHHHhCCeEEEecC
Q 002089 602 KDAGRFSAA---WQLYKAQEELIKVAKQYGIKLTMFHG 636 (969)
Q Consensus 602 KDgG~las~---W~Ly~Aq~~L~~va~~~gV~l~~FHG 636 (969)
+|-|--.+. =.++-+...++..|+-+|+.. |+|
T Consensus 149 ~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a--~D~ 184 (283)
T COG2301 149 ADLGARRSPDGTDPLRYARAMIVLAARAAGLAA--IDG 184 (283)
T ss_pred HHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCc--ccc
Confidence 655543332 267888889999999999987 554
No 33
>PLN02762 pyruvate kinase complex alpha subunit
Probab=50.61 E-value=70 Score=39.00 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=74.7
Q ss_pred hHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhH
Q 002089 527 AYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGR 606 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~ke~Gl~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 606 (969)
-.-+|+.++++||.++--+.++.|....+.|+.=.||.+.++|-++|++. -=-||+.--|=+-+-
T Consensus 219 ~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~-------------sDgiMVARGDLGvEi-- 283 (509)
T PLN02762 219 FIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRA-------------SDGAMVARGDLGAQI-- 283 (509)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHh-------------cCEEEEecCcccccc--
Confidence 34579999999999998888887764467889999999999999999987 236999887665554
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 607 FSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 607 las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
.-..+...|+++++.|+++|..+..
T Consensus 284 --p~e~vp~~QK~II~~c~~~gKPVIv 308 (509)
T PLN02762 284 --PLEQVPSVQEKIVRLCRQLNKPVIV 308 (509)
T ss_pred --CHHHhHHHHHHHHHHHHHhCCCEEE
Confidence 4578999999999999999987764
No 34
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=46.97 E-value=14 Score=43.30 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=45.7
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHHcCCC----------------CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhc
Q 002089 525 FGAYIISMATAPSDVLAVELLQRECHVK----------------QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRI 587 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke~Gl~----------------~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l 587 (969)
-|.|.||...-.-.--.|.-|||++|+. ..|+|.|=|-++++|+.|-+++-.....-...+.+
T Consensus 344 ~GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~~ekll 422 (425)
T PF12897_consen 344 KGGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAAVEKLL 422 (425)
T ss_dssp SBSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999876666667788899999972 47999999999999999999987776655555544
No 35
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=46.88 E-value=15 Score=28.32 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=16.5
Q ss_pred HHHHHHHhhcHHHHhhcc
Q 002089 571 PAALARLFSVDWYRNRIN 588 (969)
Q Consensus 571 ~~im~~ll~~p~yr~~l~ 588 (969)
.+||+.+-.+|.||+||+
T Consensus 7 gqimk~yaadpeyrkh~~ 24 (38)
T PF02526_consen 7 GQIMKAYAADPEYRKHLN 24 (38)
T ss_pred hHHHHHHhcCHHHHHHHH
Confidence 589999999999999983
No 36
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=45.60 E-value=44 Score=40.69 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=68.7
Q ss_pred chhhHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeec
Q 002089 524 NFGAYIISMATAPSDVLAVELLQ----RECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYS 598 (969)
Q Consensus 524 a~~~yIISmt~sasDvL~V~lL~----ke~Gl~-~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYS 598 (969)
++ -++|..++++.|+-.+--+. +..|+. ..+.+.+|.||+..+-|+.+|+..+ |.|+ .-++.|.-
T Consensus 185 gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~al------r~Rl---~gLn~G~~ 254 (511)
T cd00727 185 GP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYEL------RDHS---AGLNCGRW 254 (511)
T ss_pred Cc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCce---EEEEcChH
Confidence 44 67899999999998774443 345775 5799999999999999999999775 2333 34677776
Q ss_pred cCCcchhHHh---------H------HHHHHHH-HHHHHHHHHHhCCe
Q 002089 599 DSGKDAGRFS---------A------AWQLYKA-QEELIKVAKQYGIK 630 (969)
Q Consensus 599 DS~KDgG~la---------s------~W~Ly~A-q~~L~~va~~~gV~ 630 (969)
|=.+|-|.-. . .=.+..| +..++..|+++|+.
T Consensus 255 Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~ 302 (511)
T cd00727 255 DYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAH 302 (511)
T ss_pred HHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 6555443221 0 1145566 66699999999974
No 37
>PRK09255 malate synthase; Validated
Probab=43.83 E-value=52 Score=40.26 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=67.2
Q ss_pred hHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCC
Q 002089 527 AYIISMATAPSDVLAVELLQ----RECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSG 601 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~----ke~Gl~-~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~ 601 (969)
.++|..++++.|+-.+--+. +..|+. ..+.+.+|.||+..+-|+.+|+..+ |.|+ .-++.|.-|=.
T Consensus 208 ~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~------r~Rl---~gLn~G~~Dy~ 278 (531)
T PRK09255 208 YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYEL------REHI---AGLNCGRWDYI 278 (531)
T ss_pred EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCce---EEEEcChHHhh
Confidence 78899999999998774443 345775 5799999999999999999999775 2333 44677776665
Q ss_pred cchh--------HH-------hHHHHHHHH-HHHHHHHHHHhCCe
Q 002089 602 KDAG--------RF-------SAAWQLYKA-QEELIKVAKQYGIK 630 (969)
Q Consensus 602 KDgG--------~l-------as~W~Ly~A-q~~L~~va~~~gV~ 630 (969)
.|-+ ++ +-.=.+..| +..++..|+++|+.
T Consensus 279 ~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~ 323 (531)
T PRK09255 279 FSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAH 323 (531)
T ss_pred hhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 4322 11 111145566 66777999999963
No 38
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=43.71 E-value=37 Score=41.37 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=67.5
Q ss_pred hHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCC
Q 002089 527 AYIISMATAPSDVLAVELLQ----RECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSG 601 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~----ke~Gl~-~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~ 601 (969)
-++|..++|+.|+..+--+. +..|+. ..+.++||.||+..+.|+.+|+..+= .++ --++.|.-|=.
T Consensus 187 yi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr------~rv---~gLn~G~~Dy~ 257 (511)
T cd00480 187 YFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELR------DHS---AGLNCGRWDYI 257 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhcc------Ccc---eeeecChHHHH
Confidence 34789999999998884333 345774 47999999999999999999997642 222 33566666655
Q ss_pred cchhHH-----------------hHHHHHHHHHHHHHHHHHHhCCeE
Q 002089 602 KDAGRF-----------------SAAWQLYKAQEELIKVAKQYGIKL 631 (969)
Q Consensus 602 KDgG~l-----------------as~W~Ly~Aq~~L~~va~~~gV~l 631 (969)
.|-|.. ++-| ++-.+..++..|+++|+..
T Consensus 258 ~sli~~~~~~~~~~~pd~~~~~m~~~~-l~ay~~~lv~aa~a~G~~A 303 (511)
T cd00480 258 FSEIKTFRNHPDFVLPDRAKVTMTSPF-MRAYEKLLVKTCHRRGAHA 303 (511)
T ss_pred HHhccccccCccccCCcccccccccHH-HHHHHHHHHHHHHHcCCCc
Confidence 544322 2333 4446777999999999975
No 39
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=41.33 E-value=43 Score=43.04 Aligned_cols=93 Identities=20% Similarity=0.119 Sum_probs=70.7
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCC---
Q 002089 528 YIISMATAPSDVLAVELLQRECHVK---QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSG--- 601 (969)
Q Consensus 528 yIISmt~sasDvL~V~lL~ke~Gl~---~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~--- 601 (969)
.++-|-++++++.++.-.+|..|+. ..+.|.+..||.+.+.++++|++. ..-|+||-.|=+
T Consensus 640 ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~-------------vDfi~IGtnDLtq~~ 706 (795)
T PRK06464 640 VMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEY-------------FDGFSIGSNDLTQLT 706 (795)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999999999888874 368899999999999999999976 123444444322
Q ss_pred -------cchhHHhH--HHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 602 -------KDAGRFSA--AWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 602 -------KDgG~las--~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
..-|.+-. +=++.++-+.+++.|+++|+.+-+
T Consensus 707 lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgi 747 (795)
T PRK06464 707 LGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGI 747 (795)
T ss_pred hCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 21122111 127888999999999999998875
No 40
>PLN00197 beta-amylase; Provisional
Probab=41.16 E-value=23 Score=43.08 Aligned_cols=33 Identities=42% Similarity=0.813 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002089 610 AWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRGG 645 (969)
Q Consensus 610 ~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRGG 645 (969)
+|+=|+ +|.++++++|.|+.. ||..||.||-.-
T Consensus 162 dWsgY~---~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~ 197 (573)
T PLN00197 162 NWGGYN---ELLEMAKRHGLKVQAVMSFHQCGGNVGDSC 197 (573)
T ss_pred CcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 788886 789999999999875 999999998753
No 41
>PLN02803 beta-amylase
Probab=40.81 E-value=23 Score=42.82 Aligned_cols=33 Identities=39% Similarity=0.839 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002089 610 AWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRGG 645 (969)
Q Consensus 610 ~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRGG 645 (969)
+|+=|+ +|.++++++|.|+.. ||..||.||-.-
T Consensus 142 dWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 177 (548)
T PLN02803 142 NWEGYA---ELVQMVQKHGLKLQVVMSFHQCGGNVGDSC 177 (548)
T ss_pred CcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 788886 689999999999875 999999998754
No 42
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=39.94 E-value=43 Score=41.36 Aligned_cols=101 Identities=17% Similarity=0.074 Sum_probs=73.4
Q ss_pred hhhHHhhcCCChhhHHHHHHHHHHcC-------C--CCCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEE
Q 002089 525 FGAYIISMATAPSDVLAVELLQRECH-------V--KQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMI 595 (969)
Q Consensus 525 ~~~yIISmt~sasDvL~V~lL~ke~G-------l--~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMl 595 (969)
--..++-|.+++.++.++.-++++++ . ...+.|.+..||...+.+++.|++. .--++|
T Consensus 384 ~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~-------------vDf~sI 450 (565)
T TIGR01417 384 KLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE-------------VDFFSI 450 (565)
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh-------------CCEEEE
Confidence 34568999999999999988888643 2 2468899999999999999998872 344556
Q ss_pred eeccCCc-----c-----hhH--HhHHHHHHHHHHHHHHHHHHhCCeEEEecCCC
Q 002089 596 GYSDSGK-----D-----AGR--FSAAWQLYKAQEELIKVAKQYGIKLTMFHGRG 638 (969)
Q Consensus 596 GYSDS~K-----D-----gG~--las~W~Ly~Aq~~L~~va~~~gV~l~~FHGRG 638 (969)
|.-|=+- | -|+ =.-.=++.++-+.+++.|+++|+.+.+.+.-+
T Consensus 451 GtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a 505 (565)
T TIGR01417 451 GTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA 505 (565)
T ss_pred ChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC
Confidence 6555433 1 121 11133778899999999999999987655444
No 43
>PLN02801 beta-amylase
Probab=39.56 E-value=25 Score=42.35 Aligned_cols=34 Identities=32% Similarity=0.791 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEE---EecCCCCCCCCCC
Q 002089 609 AAWQLYKAQEELIKVAKQYGIKLT---MFHGRGGTVGRGG 645 (969)
Q Consensus 609 s~W~Ly~Aq~~L~~va~~~gV~l~---~FHGRGGsvgRGG 645 (969)
=+|+=|+ +|.++++++|.|+. =||..||.||-.-
T Consensus 71 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 107 (517)
T PLN02801 71 YDWSAYR---SLFELVQSFGLKIQAIMSFHQCGGNVGDAV 107 (517)
T ss_pred cCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 68889999999985 4999999998764
No 44
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=38.11 E-value=61 Score=39.50 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=67.7
Q ss_pred hHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCC
Q 002089 527 AYIISMATAPSDVLAVELLQ----RECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSG 601 (969)
Q Consensus 527 ~yIISmt~sasDvL~V~lL~----ke~Gl~-~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~ 601 (969)
.++|...+++.|+-.+--+. +..|+. ..+.+.+|.||+-.+-|+++|+..+ |.|+ .-+.+|.-|=.
T Consensus 188 ~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~al------r~Rl---~gLn~G~~Dy~ 258 (511)
T TIGR01344 188 YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYEL------REHI---SGLNCGRWDYI 258 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhc------cCce---eEEEcChHHhh
Confidence 67899999999998774443 345775 5799999999999999999999875 3333 44778888877
Q ss_pred cchh----H----HhHH-H------HHHHH-HHHHHHHHHHhCCe
Q 002089 602 KDAG----R----FSAA-W------QLYKA-QEELIKVAKQYGIK 630 (969)
Q Consensus 602 KDgG----~----las~-W------~Ly~A-q~~L~~va~~~gV~ 630 (969)
++-+ . .... . .+..| +..++..|+++|+.
T Consensus 259 ~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~ 303 (511)
T TIGR01344 259 FSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAH 303 (511)
T ss_pred hhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCC
Confidence 3322 2 2111 1 45666 66677999999974
No 45
>PLN02905 beta-amylase
Probab=37.87 E-value=27 Score=43.01 Aligned_cols=34 Identities=35% Similarity=0.713 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002089 609 AAWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRGG 645 (969)
Q Consensus 609 s~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRGG 645 (969)
=+|+=|+ +|.++++++|.|+.. ||..||.||-.-
T Consensus 320 YdWsgY~---~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 320 YNWNGYK---RLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 689999999999875 999999998664
No 46
>PLN02705 beta-amylase
Probab=36.77 E-value=30 Score=42.58 Aligned_cols=33 Identities=30% Similarity=0.748 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCC
Q 002089 609 AAWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRG 644 (969)
Q Consensus 609 s~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRG 644 (969)
=+|+=|+ +|.++++++|.|+.. ||..||.||-.
T Consensus 302 YdWsgY~---~L~~mvr~~GLKlqvVmSFHqCGGNVGD~ 337 (681)
T PLN02705 302 YVWSGYR---ELFNIIREFKLKLQVVMAFHEYGGNASGN 337 (681)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEeeccCCCCCCc
Confidence 3788886 689999999999875 99999998843
No 47
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=35.35 E-value=63 Score=41.49 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=71.1
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCc--
Q 002089 528 YIISMATAPSDVLAVELLQRECHVK---QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGK-- 602 (969)
Q Consensus 528 yIISmt~sasDvL~V~lL~ke~Gl~---~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~K-- 602 (969)
.++-|-+++.++.++.-.++..|+. ..+.|....||.+.+.++++|++. ..-|+||-.|=+-
T Consensus 633 Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~-------------vDfisIGtnDLtq~~ 699 (782)
T TIGR01418 633 VMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKE-------------FDGFSIGSNDLTQLT 699 (782)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999998888988874 237899999999999999999976 2345666555332
Q ss_pred --------chhHHh--HHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 603 --------DAGRFS--AAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 603 --------DgG~la--s~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
..|.+- -+=++.++-+++++.|+++|+.+-+
T Consensus 700 lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgi 740 (782)
T TIGR01418 700 LGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGI 740 (782)
T ss_pred hCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 111111 1236788999999999999999876
No 48
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=33.70 E-value=76 Score=31.82 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002089 253 VPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIED 322 (969)
Q Consensus 253 vP~~~~~l~~al~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~ 322 (969)
+=.+.-+|..++.++ ||+.++|||.. .+++.|++++++
T Consensus 94 lDalIGrLraafee~-------------------Gg~pe~NPf~~-------------~~vr~yLr~vr~ 131 (132)
T PF04852_consen 94 LDALIGRLRAAFEEH-------------------GGHPEANPFAA-------------RAVRLYLREVRD 131 (132)
T ss_pred HHHHHHHHHHHHHHh-------------------CCCCCCCchhh-------------HHHHHHHHHHhc
Confidence 334555667777665 46667999953 356788888753
No 49
>PLN02161 beta-amylase
Probab=33.41 E-value=41 Score=40.70 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=46.7
Q ss_pred CeeEEEE----eeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCCcchhhhhhcCCCCcc-
Q 002089 589 GKQEVMI----GYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRGGGPTHLAILSQPPDTI- 660 (969)
Q Consensus 589 ~~QeVMl----GYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRGGGPt~~ailaqP~gsv- 660 (969)
|+--||+ |.=-+..++ -=+|+-|+ +|.++++++|.|+.. ||..||.||.-.+ ...|....
T Consensus 130 GVdGVmvDVWWGiVE~~~p~---~YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~------IpLP~WV~~ 197 (531)
T PLN02161 130 GVHGIAVEVWWGIVERFSPL---EFKWSLYE---ELFRLISEAGLKLHVALCFHSNMHLFGGKGG------ISLPLWIRE 197 (531)
T ss_pred CCCEEEEEeeeeeeecCCCC---cCCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCccC------ccCCHHHHh
Confidence 4445665 444433222 33799886 688999999999875 9999999987665 23444333
Q ss_pred ----cCceeeecchh
Q 002089 661 ----HGSLRVTVQGE 671 (969)
Q Consensus 661 ----~g~irvTEQGE 671 (969)
+-.|-.|.|-.
T Consensus 198 ~g~~~pDi~ftDr~G 212 (531)
T PLN02161 198 IGDVNKDIYYRDKNG 212 (531)
T ss_pred hhccCCCceEEcCCC
Confidence 33577776654
No 50
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=32.96 E-value=37 Score=37.02 Aligned_cols=123 Identities=23% Similarity=0.286 Sum_probs=85.0
Q ss_pred cccCChHHHhcH-HHHHHHHhhcHHHHhhccCeeEEE----EeeccCCcchhHHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002089 559 PLFEKLADLEAA-PAALARLFSVDWYRNRINGKQEVM----IGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 633 (969)
Q Consensus 559 PLFETi~DL~~a-~~im~~ll~~p~yr~~l~~~QeVM----lGYSDS~KDgG~las~W~Ly~Aq~~L~~va~~~gV~l~~ 633 (969)
-.|||..|+++- -.|.+.|.+++...+|+. .|-|| +||-|-++=--++.+|=+| ++.++..+.||+..+
T Consensus 12 l~~e~~~~se~~p~~vy~~l~~D~ev~A~l~-maNv~av~RlgYNDHG~vHa~Iva~~Al-----~i~~lL~~~Gv~ps~ 85 (269)
T COG3294 12 LIEETLADSEAFPKDVYELLLNDEEVQAYLK-MANVMAVGRLGYNDHGPVHARIVANSAL-----AIYKLLLEKGVKPSG 85 (269)
T ss_pred cccccchhhhhchHHHHHHHhcCHHHHHHHH-HhhhhhhhhhcccCCCceeeeeccchHH-----HHHHHHHhcCCCccc
Confidence 368999999999 589999999999999993 22233 8999999888887777555 677788899999875
Q ss_pred e--------------------cCCCCCCCCCCcchhhhhhcCCCCcccCceeeecchhHHHhhhCChhHHHHHHHHHHHH
Q 002089 634 F--------------------HGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAA 693 (969)
Q Consensus 634 F--------------------HGRGGsvgRGGGPt~~ailaqP~gsv~g~irvTEQGEvI~~kyg~~~~A~r~Le~~~aa 693 (969)
. |-=|-||-|--++.|-+.+|.+ .+ --.++--|.+|.-|.+-=.-.+.|
T Consensus 86 v~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~~--Il---------drIL~kiy~~~~k~~~~rsevlhA 154 (269)
T COG3294 86 VTDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLALD--IL---------DRILSKIYPDPEKAVRVRSEVLHA 154 (269)
T ss_pred ccccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhHH--HH---------HHHhhhhcCCHHHHHhHHHHHHHH
Confidence 4 4455566666666666666653 11 123445566666665554445555
Q ss_pred HHHcc
Q 002089 694 TLEHG 698 (969)
Q Consensus 694 ~l~~s 698 (969)
+..+.
T Consensus 155 I~ch~ 159 (269)
T COG3294 155 IYCHD 159 (269)
T ss_pred hhccC
Confidence 55444
No 51
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=31.71 E-value=36 Score=38.07 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCCccccccCChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHh--HHHHHHHHHHHHHHHHHHhCCe
Q 002089 553 QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFS--AAWQLYKAQEELIKVAKQYGIK 630 (969)
Q Consensus 553 ~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--s~W~Ly~Aq~~L~~va~~~gV~ 630 (969)
..+-|++..||.+.++|+.+|+.. .+.--|++|=.|=+.+-|+.. -.=++..|-+++.+.|+++|+.
T Consensus 144 ~~~~vi~qiEt~~a~~n~~~I~~~-----------~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~ 212 (267)
T PRK10128 144 DSLCLLVQVESKTALDNLDEILDV-----------EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKA 212 (267)
T ss_pred cccEEEEEECCHHHHHhHHHHhCC-----------CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCe
Confidence 357789999999999999999853 467789999988777777532 1125667899999999999998
Q ss_pred EEEe
Q 002089 631 LTMF 634 (969)
Q Consensus 631 l~~F 634 (969)
+-+|
T Consensus 213 ~G~~ 216 (267)
T PRK10128 213 AGFL 216 (267)
T ss_pred EEEc
Confidence 7543
No 52
>KOG3831 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=41 Score=34.29 Aligned_cols=48 Identities=33% Similarity=0.548 Sum_probs=39.5
Q ss_pred CChHHHhcHHHHHHHHhhcHHHHhhccCeeEEEEeeccCCcchhHHhHHHHHHHHHHHHHHH
Q 002089 562 EKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKV 623 (969)
Q Consensus 562 ETi~DL~~a~~im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v 623 (969)
...+||+|-|.-.=..+.|-|. |||-|..-.-++.|++-||++++...
T Consensus 61 dafedlenppaav~av~kn~~l--------------s~s~k~sal~t~~wsiikakrq~l~~ 108 (196)
T KOG3831|consen 61 DAFEDLENPPAAVLAVLKNRFL--------------SDSFKESALATACWSIIKAKRQLLKN 108 (196)
T ss_pred HHHHhccCChHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999877776666553 89999999999999999999998653
No 53
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=30.14 E-value=1.5e+02 Score=31.92 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHc
Q 002089 504 TEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQREC 549 (969)
Q Consensus 504 s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~ 549 (969)
+|...++++.++.+...|.+.+. |+.|+++.+|++.++-+.+++
T Consensus 131 tp~~~~l~~~~~~~~~~gaDivK--ia~~a~~~~D~~~ll~~~~~~ 174 (228)
T TIGR01093 131 TPSWEEIVERLEKALSYGADIVK--IAVMANSKEDVLTLLEITNKV 174 (228)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEE--EEeccCCHHHHHHHHHHHHHH
Confidence 45556678888888888876555 788999999999999887665
No 54
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.73 E-value=3.6e+02 Score=29.09 Aligned_cols=139 Identities=9% Similarity=0.136 Sum_probs=84.1
Q ss_pred CCCChHHhhhHHHHHHH-------HHHhcCCccchhhH-HHHHHHHHHHhCCccccccccccchHHHHHHHHHHHhcCCC
Q 002089 401 VFTNVEQFLEPLELCYR-------SLCSCGDRAIADGS-LLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIG 472 (969)
Q Consensus 401 ~y~~~~ell~dL~~i~~-------SL~~~~~~~~a~~~-L~~lir~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~ 472 (969)
.+.+++|+++.+..-+. .+.-.|++.+.... +.++++.++-.|+|.+ +| -|-....+.+.+++..+...
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~-le--TnG~~~~~~~~~l~~~~D~~ 93 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCA-IE--TAGDAPASKLLPLAKLCDEV 93 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEE-EE--CCCCCCHHHHHHHHHhcCEE
Confidence 35678888877544322 22224444444444 7899999999998875 22 23333346777887776644
Q ss_pred --CCCCCCHHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC-chhhHHhh-cCCChhhHHHHHHHHHH
Q 002089 473 --SYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPAD-NFGAYIIS-MATAPSDVLAVELLQRE 548 (969)
Q Consensus 473 --~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~~~~-a~~~yIIS-mt~sasDvL~V~lL~ke 548 (969)
|+..+|++ +-..++. -....+++.++.+++.+.. -+..-+|. ++.+..++-++.-+.+.
T Consensus 94 l~DiK~~d~~-~~~~~tG----------------~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 94 LFDLKIMDAT-QARDVVK----------------MNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred EEeeccCCHH-HHHHHHC----------------CCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78888773 2222221 0136788888888887654 23333444 46678888888777777
Q ss_pred cCCCCCCccccc
Q 002089 549 CHVKQPLRVVPL 560 (969)
Q Consensus 549 ~Gl~~~l~VvPL 560 (969)
.++. ++.+.|-
T Consensus 157 l~~~-~~~llpy 167 (213)
T PRK10076 157 LGIK-QIHLLPF 167 (213)
T ss_pred cCCc-eEEEecC
Confidence 6653 4555543
No 55
>PLN02389 biotin synthase
Probab=27.93 E-value=1.8e+02 Score=34.15 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHhhcCCChhhHHHHHHHHHHcC
Q 002089 506 EIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECH 550 (969)
Q Consensus 506 ~~~e~l~~f~~i~~~~~~a~~~yIISmt~sasDvL~V~lL~ke~G 550 (969)
...+.+++++.+.+.|-..+...||.|-++..|+.+.+...++.+
T Consensus 211 s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~ 255 (379)
T PLN02389 211 SYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLP 255 (379)
T ss_pred CHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcc
Confidence 457788888888888877788888888888888888888888753
No 56
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.88 E-value=3.8e+02 Score=32.11 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=62.3
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcchhhhccCCChHHHHHHHHHHHHHHhhhh---
Q 002089 176 TQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKG--- 252 (969)
Q Consensus 176 TEa~RrtvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~gl~y~~~sl~~a--- 252 (969)
++..+.=+.+-++++..-|++.-...++.+...+..+.-.+....+.+--++|..+|+|.+-..-...|....+...
T Consensus 153 ~~~~~~Y~~~ql~~l~~~LEe~tG~kit~e~L~eaI~n~nr~~~~~~e~~~l~~~~P~Pisg~dl~~~~~~~~~~~~~~~ 232 (430)
T TIGR03191 153 TDARLDYVANQLHDGIEFVEKASGRKCDDELFIKAIKNEMRSTARWADICALNKAKPAPLDEKTMYSLYVLAILHKSSQW 232 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCccHH
Confidence 45666667777888888888877777777654443332222222222668899999999985432333333333333
Q ss_pred HHHHHHHHHHHHHhc---CCCCCCCCCCCccccCcCCCCCCCCCCC
Q 002089 253 VPKFLRRVDTALKNI---GINERVPYNAPLIQFSSWMGGDRDGNPR 295 (969)
Q Consensus 253 vP~~~~~l~~al~~~---~~~~~~~~~~~~i~fgSWiGGDRDGNP~ 295 (969)
.-.+++.|-+-+++. |. ...|.. .+ |+ |++|-- |-|+
T Consensus 233 ~~~~~~~L~~el~~r~~~G~-~~~~~e-~~-Ri--l~~g~p-~~~~ 272 (430)
T TIGR03191 233 CADFMDELYEEVKDRVARGI-AAVPNE-RC-RL--MSDTQP-PWPF 272 (430)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCCCC-Cc-eE--EEeCCC-CCch
Confidence 234455555444432 21 112222 22 55 888765 4443
No 57
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=26.82 E-value=22 Score=30.13 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=32.4
Q ss_pred HHHHHHHhCCccccccccccchHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 002089 435 FLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQ 483 (969)
Q Consensus 435 lir~v~~FGfhla~LDiRQ~S~~H~~al~ei~~~~g~~~Y~~l~E~~r~ 483 (969)
||--.++||..+-.+||---| .+..+++.+.-.+|++|||++-+
T Consensus 15 li~im~sf~~a~~~~~i~i~s-----~~~~l~~~l~k~~ys~ld~ee~m 58 (62)
T PF12133_consen 15 LIIIMRSFRIAIWNIQIIISS-----IVRQLFNPLDKKNYSELDDEEPM 58 (62)
T ss_pred HHHHHHHHHHHHHhHHhHHHH-----HHHHHhcccccccccccCccccc
Confidence 556689999999999985433 35566666655589999997643
No 58
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=25.42 E-value=1.5e+02 Score=28.65 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHhC
Q 002089 820 VTIDLVEMVFAKGNHKIAALYDQLLVSKDLW-SFGEKLRVNYEETKGLLLQIAG 872 (969)
Q Consensus 820 ~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~-~i~~~I~~E~~~T~~~vl~itg 872 (969)
.+.+.+.-.+...+-.|...|..++.|+.+. .+...|+++. .+..+|..+..
T Consensus 53 ~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~~~~-~Ae~Av~~~~~ 105 (123)
T PF05524_consen 53 QLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIREGK-NAEYAVQEVIE 105 (123)
T ss_dssp HHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3344455555677779999999999999976 8999999999 77777777664
No 59
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.52 E-value=1.3e+02 Score=22.79 Aligned_cols=24 Identities=33% Similarity=0.180 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhhc
Q 002089 140 IEETFKRLVGELNKSPEEIFDALKN 164 (969)
Q Consensus 140 ~~~~l~~L~~~~g~~~e~i~~~L~~ 164 (969)
|-..+... ++.|+|+++|.++|..
T Consensus 5 W~~Li~eA-~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 5 WVELIKEA-KESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHH-HHTT--HHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHh
Confidence 55667777 7999999999999864
Done!