BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002090
(968 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296083740|emb|CBI23729.3| unnamed protein product [Vitis vinifera]
Length = 1114
Score = 1638 bits (4241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 797/1032 (77%), Positives = 881/1032 (85%), Gaps = 65/1032 (6%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
MWW+ER+QMC+KPST+HLV RL YSNLLG+D NLKNG+LKEGTLNWEMLQFKSKFPREVL
Sbjct: 81 MWWKERMQMCKKPSTVHLVKRLIYSNLLGVDPNLKNGNLKEGTLNWEMLQFKSKFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIGIDACILVEYAGLNPFGGLR +SIP+AGCPV+NLRQTLDDLTR+GYSVC
Sbjct: 141 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSIPRAGCPVMNLRQTLDDLTRSGYSVC 200
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEEVQGPTQARSRK RFISGHAHPGSPYVFGLVG+DHDLDFPEPMPV+G+SRSAKGY I
Sbjct: 201 IVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSAKGYSI 260
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
I +LETMKT+S+EDGLTE+ALVTKLRT YHHL LHTSLR+N+SGT RWGE+GEGGLLWG
Sbjct: 261 ILVLETMKTFSVEDGLTEEALVTKLRTCHYHHLLLHTSLRRNSSGTCRWGEFGEGGLLWG 320
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC ARHFEWFEGDPV +LL KVKELYG +++VTFRNVTVS E RPR LHLGTATQIGAIP
Sbjct: 321 ECSARHFEWFEGDPVSQLLFKVKELYGFDDQVTFRNVTVSSEKRPRSLHLGTATQIGAIP 380
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIPCLLKVLLPSNC+GLP+LYVRDLLLNPPAYEIAS IQA C+LM+ VTCSIPEFTC
Sbjct: 381 TEGIPCLLKVLLPSNCTGLPLLYVRDLLLNPPAYEIASIIQATCRLMNNVTCSIPEFTCV 440
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLELREANHIEFCRIK+VLDEIL M+ NS+LN+IL+LLMDPTWVATGLKIDF+
Sbjct: 441 SPAKLVKLLELREANHIEFCRIKSVLDEILQMHRNSDLNKILKLLMDPTWVATGLKIDFD 500
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
TLV EC S RIG+MI LDGE+DQKI + IP++FFEDMES WKGRVKRIH+E AE
Sbjct: 501 TLVNECEWISARIGKMIFLDGENDQKISYHPIIPNDFFEDMESPWKGRVKRIHVEEAFAE 560
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
VE AAEALSLA++EDFLPIISRIKATTAPLGGPKGE++YAREHEAVWFKGK+F P WA
Sbjct: 561 VERAAEALSLAISEDFLPIISRIKATTAPLGGPKGEVVYAREHEAVWFKGKRFAPVAWAG 620
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGEEQIKQL+PA+DSKGRKVG EWF+T+KVE+AL RYHEAG KAKA+VLELLRGLS+EL
Sbjct: 621 TPGEEQIKQLRPAIDSKGRKVGLEWFTTVKVEDALTRYHEAGDKAKARVLELLRGLSAEL 680
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL------KDIE-LDGANCLKMNGL 648
QTKINIL+FASMLLVI KALFAHVSEGRRRKWVFP+L KD+E LDGAN +K+ GL
Sbjct: 681 QTKINILIFASMLLVIAKALFAHVSEGRRRKWVFPSLVELHRSKDMEPLDGANWMKITGL 740
Query: 649 SPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
SPYW D A+GSAVHNTVDM+SLFLLTGPNGGGKSSLLRSICAA+LLGICG MVPAESA I
Sbjct: 741 SPYWLDVAQGSAVHNTVDMKSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALI 800
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
P+FD+IMLHMKSYDSPADGKSSFQ+EMSE+RSI+T TSRSLVLIDEICRGTETAKGTCI
Sbjct: 801 PHFDSIMLHMKSYDSPADGKSSFQIEMSEMRSIITGATSRSLVLIDEICRGTETAKGTCI 860
Query: 769 AGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
AGSI+ETLD IGCLGIVSTHLHGIF+L L KNA KAMGTEY+DG+T PTWKL+DGICR
Sbjct: 861 AGSIVETLDKIGCLGIVSTHLHGIFTLGLNTKNAICKAMGTEYVDGKTKPTWKLIDGICR 920
Query: 829 ESLAFETAKREGVPETIIQRAEDLY--------IACGVNC-------------------- 860
ESLAFETA++EG+PETII+RAE+LY I G C
Sbjct: 921 ESLAFETAQKEGIPETIIRRAEELYLSIHSKDLITGGTICPKIESTNEMEVLHKKVESAV 980
Query: 861 -------------------------VMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTD 895
V I EQPPPS IGAS VYV+ DKKLY+G+TD
Sbjct: 981 TIVCQKKLKELYKQKNTSKLPEINCVAILPGEQPPPSTIGASSVYVLFSTDKKLYVGETD 1040
Query: 896 DLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNF 955
DL+GR+RAHR KEGMQ ASFLYFVVPGKS+ACQ+ETLLINQL QGF L N ADGKHRNF
Sbjct: 1041 DLEGRVRAHRSKEGMQKASFLYFVVPGKSLACQLETLLINQLPVQGFQLVNRADGKHRNF 1100
Query: 956 GTSSRPVETLTV 967
GT VE +T+
Sbjct: 1101 GTLDHSVEVVTL 1112
>gi|297835516|ref|XP_002885640.1| hypothetical protein ARALYDRAFT_479946 [Arabidopsis lyrata subsp.
lyrata]
gi|297331480|gb|EFH61899.1| hypothetical protein ARALYDRAFT_479946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1115
Score = 1568 bits (4059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/1027 (74%), Positives = 849/1027 (82%), Gaps = 71/1027 (6%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+ERLQ C+KPSTL L+ RL Y+NLLGLD +L+NGSLK+G LNWEMLQFKS+FPREVL
Sbjct: 81 VWWKERLQTCKKPSTLQLIERLMYTNLLGLDPSLRNGSLKDGNLNWEMLQFKSRFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIGIDACILVEYAGLNPFGGLR +S+PKAGCPVVNLRQTLDDLTRNGYSVC
Sbjct: 141 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSVPKAGCPVVNLRQTLDDLTRNGYSVC 200
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEEVQGPTQARSRK RFISGHAHPGSPYV+GLVG+DHDLDFPEPMPV+G+SRSA+GYC+
Sbjct: 201 IVEEVQGPTQARSRKGRFISGHAHPGSPYVYGLVGVDHDLDFPEPMPVVGISRSARGYCM 260
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
ISI ETMK YSL+DGLTE+ALVTKLRT R HHLFLH SLR N SGT RWGE+GEGGLLWG
Sbjct: 261 ISIFETMKAYSLDDGLTEEALVTKLRTRRCHHLFLHASLRHNASGTCRWGEFGEGGLLWG 320
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC R+FEWFEGD + ELL +VK++YGL++EV+FRNV V +NRPRPLHLGTATQIG++
Sbjct: 321 ECSGRNFEWFEGDTLSELLSRVKDVYGLDDEVSFRNVNVPSKNRPRPLHLGTATQIGSL- 379
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
G+PCLLKVLLPS CSGLP LYVRDLLLNPPAY+IA IQ CKLMS VTCSIPEFTC
Sbjct: 380 --GVPCLLKVLLPSTCSGLPSLYVRDLLLNPPAYDIALKIQETCKLMSIVTCSIPEFTCL 437
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE REAN+IEFCRIKNVLDE+LHMY ++EL EIL+LLMDPTWVATGLKIDFE
Sbjct: 438 SSAKLVKLLEQREANYIEFCRIKNVLDEVLHMYKHAELVEILKLLMDPTWVATGLKIDFE 497
Query: 416 TLVEECRLASVRIGEMISL-DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIA 474
T V EC AS IGEMISL D ES Q + N+P+EFF DMES+W+GRVK IHIE EI
Sbjct: 498 TFVNECHWASDTIGEMISLDDNESHQNVSKCANVPNEFFYDMESSWRGRVKGIHIEKEIT 557
Query: 475 EVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWA 534
+VE +AEALSLAV EDFLPIISRIKATTA LGGPKGEI YAREHE+VWFKGK+F P++WA
Sbjct: 558 QVEKSAEALSLAVAEDFLPIISRIKATTASLGGPKGEIAYAREHESVWFKGKRFTPSIWA 617
Query: 535 STPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSE 594
T GE+QIKQLKPA DSKG+KVGEEWF+T KVE AL RYHEA AK +VLELLR LS +
Sbjct: 618 GTAGEDQIKQLKPAFDSKGKKVGEEWFTTPKVEAALVRYHEASENAKTRVLELLRELSVK 677
Query: 595 LQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE-------LDGANCLKMNG 647
LQTKIN+LVFASMLLVI KALFAH EGRRRKWVFP L LDGA+ +K+ G
Sbjct: 678 LQTKINVLVFASMLLVISKALFAHACEGRRRKWVFPTLVRFSTDEGAKPLDGASRMKLTG 737
Query: 648 LSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707
LSPYWFD + G+AVHNTVDMQSLFLLTGPNGGGKSSLLRSICAA+LLGI GLMVPAESAS
Sbjct: 738 LSPYWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESAS 797
Query: 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTC 767
IP+FD+IMLHMKSYDSP DGKSSFQVEMSEIRSIV+ TSRSLVLIDEICRGTETAKGTC
Sbjct: 798 IPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTC 857
Query: 768 IAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGIC 827
IAGS++E+LD GCLGIVSTHLHGIFSLPL KN YKAMG E ++GQT PTWKL DG+C
Sbjct: 858 IAGSVVESLDTSGCLGIVSTHLHGIFSLPLAAKNITYKAMGAENVEGQTKPTWKLTDGVC 917
Query: 828 RESLAFETAKREGVPETIIQRAEDLYIA-------------------------------- 855
RESLAFETAKREGVPETIIQRAE LY++
Sbjct: 918 RESLAFETAKREGVPETIIQRAEALYLSVYAKDASSGVVKPDKIVTSSNNDQQIRKPVSS 977
Query: 856 ---------------CG--------VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIG 892
CG + C+ I ARE PPPS +G+SCVYVM RPDK+LYIG
Sbjct: 978 ERSLEKDLAKAIIKICGKKMIEPEALECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIG 1037
Query: 893 QTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKH 952
QTDDL+GRIR+HR KEG+Q +SFLY +V GKS+ACQ+ETLLINQL+ QG+ LAN+ADGKH
Sbjct: 1038 QTDDLEGRIRSHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKH 1097
Query: 953 RNFGTSS 959
RNFGTSS
Sbjct: 1098 RNFGTSS 1104
>gi|42565155|ref|NP_189075.2| MUTL protein-like protein 1 [Arabidopsis thaliana]
gi|75297828|sp|Q84LK0.1|MSH1_ARATH RecName: Full=DNA mismatch repair protein MSH1, mitochondrial;
Short=AtMSH1; AltName: Full=MutS protein homolog 1;
AltName: Full=Protein CHLOROPLAST MUTATOR; Flags:
Precursor
gi|30313805|gb|AAO49798.1| DNA mismatch repair protein [Arabidopsis thaliana]
gi|332643368|gb|AEE76889.1| MUTL protein-like protein 1 [Arabidopsis thaliana]
Length = 1118
Score = 1567 bits (4057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1027 (73%), Positives = 853/1027 (83%), Gaps = 68/1027 (6%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+ERLQ C+KPSTL L+ RL Y+NLLGLD +L+NGSLK+G LNWEMLQFKS+FPREVL
Sbjct: 81 VWWKERLQTCKKPSTLQLIERLMYTNLLGLDPSLRNGSLKDGNLNWEMLQFKSRFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVG+FYEAIGIDACILVEYAGLNPFGGLR +SIPKAGCP++NLRQTLDDLTRNGYSVC
Sbjct: 141 LCRVGEFYEAIGIDACILVEYAGLNPFGGLRSDSIPKAGCPIMNLRQTLDDLTRNGYSVC 200
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEEVQGPT ARSRK RFISGHAHPGSPYV+GLVG+DHDLDFP+PMPV+G+SRSA+GYC+
Sbjct: 201 IVEEVQGPTPARSRKGRFISGHAHPGSPYVYGLVGVDHDLDFPDPMPVVGISRSARGYCM 260
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
ISI ETMK YSL+DGLTE+ALVTKLRT R HHLFLH SLR N SGT RWGE+GEGGLLWG
Sbjct: 261 ISIFETMKAYSLDDGLTEEALVTKLRTRRCHHLFLHASLRHNASGTCRWGEFGEGGLLWG 320
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC +R+FEWFEGD + ELL +VK++YGL++EV+FRNV V +NRPRPLHLGTATQIGA+P
Sbjct: 321 ECSSRNFEWFEGDTLSELLSRVKDVYGLDDEVSFRNVNVPSKNRPRPLHLGTATQIGALP 380
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIPCLLKVLLPS CSGLP LYVRDLLLNPPAY+IA IQ CKLMS VTCSIPEFTC
Sbjct: 381 TEGIPCLLKVLLPSTCSGLPSLYVRDLLLNPPAYDIALKIQETCKLMSTVTCSIPEFTCV 440
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE REAN+IEFCRIKNVLD++LHM+ ++EL EIL+LLMDPTWVATGLKIDF+
Sbjct: 441 SSAKLVKLLEQREANYIEFCRIKNVLDDVLHMHRHAELVEILKLLMDPTWVATGLKIDFD 500
Query: 416 TLVEECRLASVRIGEMISLD-GESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIA 474
T V EC AS IGEMISLD ES Q + DN+P+EFF DMES+W+GRVK IHIE EI
Sbjct: 501 TFVNECHWASDTIGEMISLDENESHQNVSKCDNVPNEFFYDMESSWRGRVKGIHIEEEIT 560
Query: 475 EVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWA 534
+VE +AEALSLAV EDF PIISRIKATTA LGGPKGEI YAREHE+VWFKGK+F P++WA
Sbjct: 561 QVEKSAEALSLAVAEDFHPIISRIKATTASLGGPKGEIAYAREHESVWFKGKRFTPSIWA 620
Query: 535 STPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSE 594
T GE+QIKQLKPA+DSKG+KVGEEWF+T KVE AL RYHEA AKA+VLELLR LS +
Sbjct: 621 GTAGEDQIKQLKPALDSKGKKVGEEWFTTPKVEIALVRYHEASENAKARVLELLRELSVK 680
Query: 595 LQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE-------LDGANCLKMNG 647
LQTKIN+LVFASMLLVI KALF+H EGRRRKWVFP L LDGA+ +K+ G
Sbjct: 681 LQTKINVLVFASMLLVISKALFSHACEGRRRKWVFPTLVGFSLDEGAKPLDGASRMKLTG 740
Query: 648 LSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707
LSPYWFD + G+AVHNTVDMQSLFLLTGPNGGGKSSLLRSICAA+LLGI GLMVPAESA
Sbjct: 741 LSPYWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESAC 800
Query: 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTC 767
IP+FD+IMLHMKSYDSP DGKSSFQVEMSEIRSIV+ TSRSLVLIDEICRGTETAKGTC
Sbjct: 801 IPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTC 860
Query: 768 IAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGIC 827
IAGS++E+LD GCLGIVSTHLHGIFSLPL KN YKAMG E ++GQT PTWKL DG+C
Sbjct: 861 IAGSVVESLDTSGCLGIVSTHLHGIFSLPLTAKNITYKAMGAENVEGQTKPTWKLTDGVC 920
Query: 828 RESLAFETAKREGVPETIIQRAEDLYIA-------------------------------- 855
RESLAFETAKREGVPE++IQRAE LY++
Sbjct: 921 RESLAFETAKREGVPESVIQRAEALYLSVYAKDASAEVVKPDQIITSSNNDQQIQKPVSS 980
Query: 856 ---------------CG--------VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIG 892
CG + C+ I ARE PPPS +G+SCVYVM RPDK+LYIG
Sbjct: 981 ERSLEKDLAKAIVKICGKKMIEPEAIECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIG 1040
Query: 893 QTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKH 952
QTDDL+GRIRAHR KEG+Q +SFLY +V GKS+ACQ+ETLLINQL+ QG+ LAN+ADGKH
Sbjct: 1041 QTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKH 1100
Query: 953 RNFGTSS 959
RNFGTSS
Sbjct: 1101 RNFGTSS 1107
>gi|11994694|dbj|BAB02932.1| unnamed protein product [Arabidopsis thaliana]
Length = 1016
Score = 1530 bits (3961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1004 (74%), Positives = 834/1004 (83%), Gaps = 68/1004 (6%)
Query: 24 YSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG 83
Y+NLLGLD +L+NGSLK+G LNWEMLQFKS+FPREVLLCRVG+FYEAIGIDACILVEYAG
Sbjct: 2 YTNLLGLDPSLRNGSLKDGNLNWEMLQFKSRFPREVLLCRVGEFYEAIGIDACILVEYAG 61
Query: 84 LNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHA 143
LNPFGGLR +SIPKAGCP++NLRQTLDDLTRNGYSVCIVEEVQGPT ARSRK RFISGHA
Sbjct: 62 LNPFGGLRSDSIPKAGCPIMNLRQTLDDLTRNGYSVCIVEEVQGPTPARSRKGRFISGHA 121
Query: 144 HPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVT 203
HPGSPYV+GLVG+DHDLDFP+PMPV+G+SRSA+GYC+ISI ETMK YSL+DGLTE+ALVT
Sbjct: 122 HPGSPYVYGLVGVDHDLDFPDPMPVVGISRSARGYCMISIFETMKAYSLDDGLTEEALVT 181
Query: 204 KLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVK 263
KLRT R HHLFLH SLR N SGT RWGE+GEGGLLWGEC +R+FEWFEGD + ELL +VK
Sbjct: 182 KLRTRRCHHLFLHASLRHNASGTCRWGEFGEGGLLWGECSSRNFEWFEGDTLSELLSRVK 241
Query: 264 ELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILY 323
++YGL++EV+FRNV V +NRPRPLHLGTATQIGA+PTEGIPCLLKVLLPS CSGLP LY
Sbjct: 242 DVYGLDDEVSFRNVNVPSKNRPRPLHLGTATQIGALPTEGIPCLLKVLLPSTCSGLPSLY 301
Query: 324 VRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHIEFCRIK 378
VRDLLLNPPAY+IA IQ CKLMS VTCSIPEFTC LVKLLE REAN+IEFCRIK
Sbjct: 302 VRDLLLNPPAYDIALKIQETCKLMSTVTCSIPEFTCVSSAKLVKLLEQREANYIEFCRIK 361
Query: 379 NVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLD-GE 437
NVLD++LHM+ ++EL EIL+LLMDPTWVATGLKIDF+T V EC AS IGEMISLD E
Sbjct: 362 NVLDDVLHMHRHAELVEILKLLMDPTWVATGLKIDFDTFVNECHWASDTIGEMISLDENE 421
Query: 438 SDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISR 497
S Q + DN+P+EFF DMES+W+GRVK IHIE EI +VE +AEALSLAV EDF PIISR
Sbjct: 422 SHQNVSKCDNVPNEFFYDMESSWRGRVKGIHIEEEITQVEKSAEALSLAVAEDFHPIISR 481
Query: 498 IKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVG 557
IKATTA LGGPKGEI YAREHE+VWFKGK+F P++WA T GE+QIKQLKPA+DSKG+KVG
Sbjct: 482 IKATTASLGGPKGEIAYAREHESVWFKGKRFTPSIWAGTAGEDQIKQLKPALDSKGKKVG 541
Query: 558 EEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFA 617
EEWF+T KVE AL RYHEA AKA+VLELLR LS +LQTKIN+LVFASMLLVI KALF+
Sbjct: 542 EEWFTTPKVEIALVRYHEASENAKARVLELLRELSVKLQTKINVLVFASMLLVISKALFS 601
Query: 618 HVSEGRRRKWVFPALKDIE-------LDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSL 670
H EGRRRKWVFP L LDGA+ +K+ GLSPYWFD + G+AVHNTVDMQSL
Sbjct: 602 HACEGRRRKWVFPTLVGFSLDEGAKPLDGASRMKLTGLSPYWFDVSSGTAVHNTVDMQSL 661
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
FLLTGPNGGGKSSLLRSICAA+LLGI GLMVPAESA IP+FD+IMLHMKSYDSP DGKSS
Sbjct: 662 FLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSS 721
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790
FQVEMSEIRSIV+ TSRSLVLIDEICRGTETAKGTCIAGS++E+LD GCLGIVSTHLH
Sbjct: 722 FQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCLGIVSTHLH 781
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
GIFSLPL KN YKAMG E ++GQT PTWKL DG+CRESLAFETAKREGVPE++IQRAE
Sbjct: 782 GIFSLPLTAKNITYKAMGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQRAE 841
Query: 851 DLYIA-----------------------------------------------CG------ 857
LY++ CG
Sbjct: 842 ALYLSVYAKDASAEVVKPDQIITSSNNDQQIQKPVSSERSLEKDLAKAIVKICGKKMIEP 901
Query: 858 --VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASF 915
+ C+ I ARE PPPS +G+SCVYVM RPDK+LYIGQTDDL+GRIRAHR KEG+Q +SF
Sbjct: 902 EAIECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSF 961
Query: 916 LYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSS 959
LY +V GKS+ACQ+ETLLINQL+ QG+ LAN+ADGKHRNFGTSS
Sbjct: 962 LYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1005
>gi|225433289|ref|XP_002282256.1| PREDICTED: uncharacterized protein LOC100266612 [Vitis vinifera]
Length = 1144
Score = 1506 bits (3899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/867 (82%), Positives = 794/867 (91%), Gaps = 12/867 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
MWW+ER+QMC+KPST+HLV RL YSNLLG+D NLKNG+LKEGTLNWEMLQFKSKFPREVL
Sbjct: 81 MWWKERMQMCKKPSTVHLVKRLIYSNLLGVDPNLKNGNLKEGTLNWEMLQFKSKFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIGIDACILVEYAGLNPFGGLR +SIP+AGCPV+NLRQTLDDLTR+GYSVC
Sbjct: 141 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSIPRAGCPVMNLRQTLDDLTRSGYSVC 200
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEEVQGPTQARSRK RFISGHAHPGSPYVFGLVG+DHDLDFPEPMPV+G+SRSAKGY I
Sbjct: 201 IVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSAKGYSI 260
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
I +LETMKT+S+EDGLTE+ALVTKLRT YHHL LHTSLR+N+SGT RWGE+GEGGLLWG
Sbjct: 261 ILVLETMKTFSVEDGLTEEALVTKLRTCHYHHLLLHTSLRRNSSGTCRWGEFGEGGLLWG 320
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC ARHFEWFEGDPV +LL KVKELYG +++VTFRNVTVS E RPR LHLGTATQIGAIP
Sbjct: 321 ECSARHFEWFEGDPVSQLLFKVKELYGFDDQVTFRNVTVSSEKRPRSLHLGTATQIGAIP 380
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIPCLLKVLLPSNC+GLP+LYVRDLLLNPPAYEIAS IQA C+LM+ VTCSIPEFTC
Sbjct: 381 TEGIPCLLKVLLPSNCTGLPLLYVRDLLLNPPAYEIASIIQATCRLMNNVTCSIPEFTCV 440
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLELREANHIEFCRIK+VLDEIL M+ NS+LN+IL+LLMDPTWVATGLKIDF+
Sbjct: 441 SPAKLVKLLELREANHIEFCRIKSVLDEILQMHRNSDLNKILKLLMDPTWVATGLKIDFD 500
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
TLV EC S RIG+MI LDGE+DQKI + IP++FFEDMES WKGRVKRIH+E AE
Sbjct: 501 TLVNECEWISARIGKMIFLDGENDQKISYHPIIPNDFFEDMESPWKGRVKRIHVEEAFAE 560
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
VE AAEALSLA++EDFLPIISRIKATTAPLGGPKGE++YAREHEAVWFKGK+F P WA
Sbjct: 561 VERAAEALSLAISEDFLPIISRIKATTAPLGGPKGEVVYAREHEAVWFKGKRFAPVAWAG 620
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGEEQIKQL+PA+DSKGRKVG EWF+T+KVE+AL RYHEAG KAKA+VLELLRGLS+EL
Sbjct: 621 TPGEEQIKQLRPAIDSKGRKVGLEWFTTVKVEDALTRYHEAGDKAKARVLELLRGLSAEL 680
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL------KDIE-LDGANCLKMNGL 648
QTKINIL+FASMLLVI KALFAHVSEGRRRKWVFP+L KD+E LDGAN +K+ GL
Sbjct: 681 QTKINILIFASMLLVIAKALFAHVSEGRRRKWVFPSLVELHRSKDMEPLDGANWMKITGL 740
Query: 649 SPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
SPYW D A+GSAVHNTVDM+SLFLLTGPNGGGKSSLLRSICAA+LLGICG MVPAESA I
Sbjct: 741 SPYWLDVAQGSAVHNTVDMKSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALI 800
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
P+FD+IMLHMKSYDSPADGKSSFQ+EMSE+RSI+T TSRSLVLIDEICRGTETAKGTCI
Sbjct: 801 PHFDSIMLHMKSYDSPADGKSSFQIEMSEMRSIITGATSRSLVLIDEICRGTETAKGTCI 860
Query: 769 AGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
AGSI+ETLD IGCLGIVSTHLHGIF+L L KNA KAMGTEY+DG+T PTWKL+DGICR
Sbjct: 861 AGSIVETLDKIGCLGIVSTHLHGIFTLGLNTKNAICKAMGTEYVDGKTKPTWKLIDGICR 920
Query: 829 ESLAFETAKREGVPETIIQRAEDLYIA 855
ESLAFETA++EG+PETII+RAE+LY++
Sbjct: 921 ESLAFETAQKEGIPETIIRRAEELYLS 947
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 89/110 (80%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
+NCV I EQPPPS IGAS VYV+ DKKLY+G+TDDL+GR+RAHR KEGMQ ASFLY
Sbjct: 1033 INCVAILPGEQPPPSTIGASSVYVLFSTDKKLYVGETDDLEGRVRAHRSKEGMQKASFLY 1092
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETLTV 967
FVVPGKS+ACQ+ETLLINQL QGF L N ADGKHRNFGT VE +T+
Sbjct: 1093 FVVPGKSLACQLETLLINQLPVQGFQLVNRADGKHRNFGTLDHSVEVVTL 1142
>gi|224107525|ref|XP_002314510.1| predicted protein [Populus trichocarpa]
gi|222863550|gb|EEF00681.1| predicted protein [Populus trichocarpa]
Length = 1130
Score = 1504 bits (3893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/867 (82%), Positives = 782/867 (90%), Gaps = 12/867 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+E LQ C+KPST++LV RL YSNLLGLD +LKNGSLKEG LNWE+LQFKSKFPREVL
Sbjct: 81 IWWKENLQRCKKPSTVNLVKRLMYSNLLGLDASLKNGSLKEGNLNWEILQFKSKFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIGIDACILVEYAGLNPFGGLR +S+P+AGCPVVNLRQTLDDLTRNGYSVC
Sbjct: 141 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSVPRAGCPVVNLRQTLDDLTRNGYSVC 200
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEEVQGPTQARSRK RFISGHA PGSPYVFGLVG+DHDL+FPEPMPV+G+S+SA+GYC+
Sbjct: 201 IVEEVQGPTQARSRKGRFISGHARPGSPYVFGLVGVDHDLEFPEPMPVVGISQSARGYCM 260
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+LETMKTYSLEDGLTE+ALVTKLRT +YHHLFLH+SLR N+SGT RWGEYG GGLLWG
Sbjct: 261 ISVLETMKTYSLEDGLTEEALVTKLRTCQYHHLFLHSSLRHNSSGTCRWGEYGRGGLLWG 320
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC R+FEWFEGDPV ELL KV+ELYGL+++V FRN VS ENRPRPLHLGTATQIGAIP
Sbjct: 321 ECNGRYFEWFEGDPVTELLFKVRELYGLDDKVGFRNAYVSSENRPRPLHLGTATQIGAIP 380
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIPCLLKVLLPSNC+GLP LYVRD+LLNPPAYEIASTIQA CKLMS +TCSIPEFTC
Sbjct: 381 TEGIPCLLKVLLPSNCTGLPELYVRDMLLNPPAYEIASTIQATCKLMSNITCSIPEFTCV 440
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE +EANHIEFCRIKNVLDEIL MY NSELNEIL+ LMDP W+ATGLKIDFE
Sbjct: 441 SSAKLVKLLEQKEANHIEFCRIKNVLDEILFMYRNSELNEILKSLMDPAWMATGLKIDFE 500
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
TLV EC AS RI EMISLDGESDQKI S +PSEFFEDMES+WKGRVKR+HIE E +E
Sbjct: 501 TLVNECEWASGRISEMISLDGESDQKISSCPVVPSEFFEDMESSWKGRVKRVHIEEEFSE 560
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
VE AA+ALSLAVTEDF+PIISRIKATT+P GGPKGEILYAREHEAVWFKGK+F P VWA
Sbjct: 561 VEKAAQALSLAVTEDFIPIISRIKATTSPFGGPKGEILYAREHEAVWFKGKRFAPAVWAG 620
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGEEQIKQLKPAVDSKGRKVGEEWF+T+K+E+AL RYH+AG KAKAKVLEL RGLS+EL
Sbjct: 621 TPGEEQIKQLKPAVDSKGRKVGEEWFTTIKLEDALTRYHDAGEKAKAKVLELFRGLSAEL 680
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE-------LDGANCLKMNGL 648
QTK+NILVFASM+LVI KALFAHVSEGRRRKWVFP L DGAN +K GL
Sbjct: 681 QTKVNILVFASMVLVIAKALFAHVSEGRRRKWVFPTLTGFNDSKGVKSSDGANRMKFVGL 740
Query: 649 SPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
SPYWF+AAEGSAV NTVDMQSLFLLTGPNGGGKSSLLRSICA++LLGICGLMVPAESA I
Sbjct: 741 SPYWFNAAEGSAVQNTVDMQSLFLLTGPNGGGKSSLLRSICASALLGICGLMVPAESALI 800
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
P FD+IMLHMKSYDSPADGKSSFQVEMSEIRS+VT +SRSLVL+DEICRGTETAKG CI
Sbjct: 801 PNFDSIMLHMKSYDSPADGKSSFQVEMSEIRSLVTGASSRSLVLVDEICRGTETAKGACI 860
Query: 769 AGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
AGSI+ETLD IGCLGIVSTHLHGIF LPL N YKAMGTEY+DG+T PTW+L+DGICR
Sbjct: 861 AGSIVETLDRIGCLGIVSTHLHGIFDLPLDTSNTVYKAMGTEYVDGRTKPTWRLIDGICR 920
Query: 829 ESLAFETAKREGVPETIIQRAEDLYIA 855
ESLAFETAK+EG+PE+IIQRAEDLY +
Sbjct: 921 ESLAFETAKKEGIPESIIQRAEDLYFS 947
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/253 (43%), Positives = 152/253 (60%), Gaps = 14/253 (5%)
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT---ETAKGTCIAGSIIETLD 777
+D P D ++ M V T + LID ICR + ETAK I SII+ +
Sbjct: 885 FDLPLDTSNTVYKAMGT--EYVDGRTKPTWRLIDGICRESLAFETAKKEGIPESIIQRAE 942
Query: 778 NIGCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
++ S + G S + + A+ + GT + + K VD + ++ + E A
Sbjct: 943 DL----YFSAYAKGFSSDRIVNDSDEAHLSSGTTASLHPSTHSTKAVDTVEKKDI--ENA 996
Query: 837 KREGVPETIIQ--RAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQT 894
+ +I+ + ++ +CV I AREQPPPS I ASCVYVMLRPDKKLY+G T
Sbjct: 997 ITMICQKKLIELYKQKNTSEVVSFHCVAIGAREQPPPSTISASCVYVMLRPDKKLYVGVT 1056
Query: 895 DDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRN 954
DDL+ RIR+HR KEGM +A+FLYF+VPGKSIAC +ETLLINQL +GF L N++DGKHRN
Sbjct: 1057 DDLESRIRSHRSKEGMDNAAFLYFIVPGKSIACLLETLLINQLPIKGFKLTNVSDGKHRN 1116
Query: 955 FGTSSRPVETLTV 967
FGT++ +E++TV
Sbjct: 1117 FGTTNLSLESVTV 1129
>gi|255574867|ref|XP_002528340.1| ATP binding protein, putative [Ricinus communis]
gi|223532208|gb|EEF34012.1| ATP binding protein, putative [Ricinus communis]
Length = 937
Score = 1484 bits (3843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/854 (83%), Positives = 772/854 (90%), Gaps = 12/854 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+ERL CRKPST+ LV RL YSNLLGL+V LKNGSLK+G LNWEMLQFKSKFPREVL
Sbjct: 84 IWWKERLHQCRKPSTVQLVKRLMYSNLLGLNVELKNGSLKDGNLNWEMLQFKSKFPREVL 143
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIGIDACILVEYAGLNPFGGLR +S+P+AGCPVVNLRQTLDDLTRNGYSVC
Sbjct: 144 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRTDSVPRAGCPVVNLRQTLDDLTRNGYSVC 203
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEEVQGPTQARSRK RFISGHAHPG+PYVFGL G+DHDLDFPEPMPV+G+SRSA GYCI
Sbjct: 204 IVEEVQGPTQARSRKGRFISGHAHPGNPYVFGLAGVDHDLDFPEPMPVVGISRSASGYCI 263
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
+S+LETMKTYS EDGLTE+ALVTKLRT RYHHLFLH SLR N+SGT RWGE+GEGGLLWG
Sbjct: 264 VSVLETMKTYSSEDGLTEEALVTKLRTCRYHHLFLHASLRHNSSGTCRWGEFGEGGLLWG 323
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC ARHFEWFEGDP ELL KV+ELYGL++ +TFRNVTV +NRPRPLHLGTATQIGAIP
Sbjct: 324 ECNARHFEWFEGDPFTELLFKVRELYGLDDGITFRNVTVPSDNRPRPLHLGTATQIGAIP 383
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIPCLLKVLLPSNC+GLP+LYVRDLLLNPPAYEIASTIQA CKLMS +TCSIPEFTC
Sbjct: 384 TEGIPCLLKVLLPSNCTGLPVLYVRDLLLNPPAYEIASTIQATCKLMSSITCSIPEFTCI 443
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLELREANH+EFCRIKNVLDEILHM+ NSELNEIL+ LMDPTWVATGLKIDFE
Sbjct: 444 SSAKLVKLLELREANHLEFCRIKNVLDEILHMHRNSELNEILKSLMDPTWVATGLKIDFE 503
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
TLV EC AS RI EMISLDGE DQK+ SY IPS+FFEDMES WKGRVKR+HIE E AE
Sbjct: 504 TLVNECEWASGRICEMISLDGEHDQKLSSYSVIPSDFFEDMESLWKGRVKRVHIEGECAE 563
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
V+ AA ALS AVTEDFLPIISRIKATTAPLGGPKGEILYAR+H+AVWFKGK+F P+VWA
Sbjct: 564 VDRAAHALSSAVTEDFLPIISRIKATTAPLGGPKGEILYARDHDAVWFKGKRFAPSVWAG 623
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGEEQIKQLKPA+DSKGRKVGEEWF+T+KVE+AL RYH+A KAKA+VLELL+GLS+EL
Sbjct: 624 TPGEEQIKQLKPAMDSKGRKVGEEWFTTIKVEDALRRYHDASEKAKARVLELLKGLSAEL 683
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL------KDIE-LDGANCLKMNGL 648
QTKI ILVFASMLLVI KALFAHVSEGRRRKWVFP L KDI+ LD AN +K+ L
Sbjct: 684 QTKIKILVFASMLLVIAKALFAHVSEGRRRKWVFPTLIALDTSKDIKSLDRANGMKLIAL 743
Query: 649 SPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
SPYW DAAEG+AVHNTV+MQSL LLTGPNGGGKSSLLRSICA++LLGICG MVPAESA+I
Sbjct: 744 SPYWLDAAEGNAVHNTVEMQSLVLLTGPNGGGKSSLLRSICASALLGICGFMVPAESATI 803
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
P+FD+IMLHMKSYDSPADGKSSFQVEMSEIRS++ +SRSLVLIDEICRGTETAKGTCI
Sbjct: 804 PHFDSIMLHMKSYDSPADGKSSFQVEMSEIRSLIAGASSRSLVLIDEICRGTETAKGTCI 863
Query: 769 AGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
AGSI+ETLD IGCLGIVSTHLHGIF LPL KN YKAMGTEY+DGQT PTW+L DGICR
Sbjct: 864 AGSIVETLDKIGCLGIVSTHLHGIFDLPLDTKNTMYKAMGTEYVDGQTKPTWRLRDGICR 923
Query: 829 ESLAFETAKREGVP 842
ESLAFETAKRE P
Sbjct: 924 ESLAFETAKRERDP 937
>gi|61696673|gb|AAX53097.1| DNA mismatch repair protein [Solanum lycopersicum]
Length = 1124
Score = 1414 bits (3661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/865 (77%), Positives = 763/865 (88%), Gaps = 12/865 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
MWW+ER++ RKPS+ L RL Y NLLG+D +L+NGSLKEGTLN EMLQFKSKFPREVL
Sbjct: 76 MWWKERMEFLRKPSSALLAKRLTYCNLLGVDPSLRNGSLKEGTLNSEMLQFKSKFPREVL 135
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIG DACILVEYAGLNPFGGL +SIPKAGCPVVNLRQTLDDLTRNG+SVC
Sbjct: 136 LCRVGDFYEAIGFDACILVEYAGLNPFGGLHSDSIPKAGCPVVNLRQTLDDLTRNGFSVC 195
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
+VEEVQGPTQAR+RKSRFISGHAHPGSPYVFGLVG D DLDFPEPMPV+G+SRSAKGYCI
Sbjct: 196 VVEEVQGPTQARARKSRFISGHAHPGSPYVFGLVGDDQDLDFPEPMPVVGISRSAKGYCI 255
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+ ETMKTYS+EDGLTE+A+VTKLRT R HH FLH SL+ N+SGTSRWGE+GEGGLLWG
Sbjct: 256 ISVYETMKTYSVEDGLTEEAVVTKLRTCRCHHFFLHNSLKNNSSGTSRWGEFGEGGLLWG 315
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC AR EW +G+P+ ELL KVKELYGL +++ FRNVTV ENRPRPLHLGTATQIGAIP
Sbjct: 316 ECNARQQEWLDGNPIDELLFKVKELYGLNDDIPFRNVTVVSENRPRPLHLGTATQIGAIP 375
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIPCLLKVLLP +CSGLP+LY+RDLLLNPPAYEI+S IQ C+LM VTCSIP+FTC
Sbjct: 376 TEGIPCLLKVLLPPHCSGLPVLYIRDLLLNPPAYEISSDIQEACRLMMSVTCSIPDFTCI 435
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLELREANH+EFC+IK++++EIL +Y NSEL I+ELLMDPTWVATGLK+DF+
Sbjct: 436 SSAKLVKLLELREANHVEFCKIKSMVEEILQLYRNSELRAIVELLMDPTWVATGLKVDFD 495
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
TLV EC S RI E+IS+ GE+DQKI SY IP++FFEDME WKGRVKRIH+E AE
Sbjct: 496 TLVNECGKISCRISEIISVHGENDQKISSYPIIPNDFFEDMELLWKGRVKRIHLEEAYAE 555
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
VE AA+ALSLA+TEDFLPIISRI+AT APLGG KGEILYAREH AVWFKGK+F PTVWA
Sbjct: 556 VEKAADALSLAITEDFLPIISRIRATMAPLGGTKGEILYAREHGAVWFKGKRFVPTVWAG 615
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
T GEEQIKQL+PA+DSKG+KVGEEWF+T++VE+A+ RYHEA AKAK++VLELLRGLSSEL
Sbjct: 616 TAGEEQIKQLRPALDSKGKKVGEEWFTTMRVEDAIARYHEASAKAKSRVLELLRGLSSEL 675
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL------KDIE-LDGANCLKMNGL 648
+KINIL+FAS+L VI K+LF+HVSEGRRR W+FP + +D E L+G + +K+ GL
Sbjct: 676 LSKINILIFASVLNVIAKSLFSHVSEGRRRNWIFPTITQFNKCQDTEALNGTDGMKIIGL 735
Query: 649 SPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
SPYWFDAA G+ V NTVDMQS+FLLTGPNGGGKSSLLRS+CAA+LLG+CG MVPAESA I
Sbjct: 736 SPYWFDAARGTGVQNTVDMQSMFLLTGPNGGGKSSLLRSLCAAALLGMCGFMVPAESAVI 795
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
P+FD+IMLHMKSYDSP DGKSSFQ+EMSEIRS++T TSRSLVLIDEICRGTETAKGTCI
Sbjct: 796 PHFDSIMLHMKSYDSPVDGKSSFQIEMSEIRSLITGATSRSLVLIDEICRGTETAKGTCI 855
Query: 769 AGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
AGS+IETLD IGCLGIVSTHLHGIF LPLKIK YKAMG EY+DGQ +PTWKL+DGIC+
Sbjct: 856 AGSVIETLDEIGCLGIVSTHLHGIFDLPLKIKKTVYKAMGAEYVDGQPIPTWKLIDGICK 915
Query: 829 ESLAFETAKREGVPETIIQRAEDLY 853
ESLAFETA+REG+PE +IQRAE+LY
Sbjct: 916 ESLAFETAQREGIPEILIQRAEELY 940
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/99 (79%), Positives = 90/99 (90%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
VNCV+IAAREQP PS IGAS VY+MLRPDKKLY+GQTDDL+GR+RAHR KEGM++ASFLY
Sbjct: 1026 VNCVLIAAREQPAPSTIGASSVYIMLRPDKKLYVGQTDDLEGRVRAHRLKEGMENASFLY 1085
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFG 956
F+V GKSIACQ+ETLLINQL + GF L N+ADGKHRNFG
Sbjct: 1086 FLVSGKSIACQLETLLINQLPNHGFQLTNVADGKHRNFG 1124
>gi|449433221|ref|XP_004134396.1| PREDICTED: DNA mismatch repair protein MSH1, mitochondrial-like
[Cucumis sativus]
Length = 1122
Score = 1387 bits (3590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/870 (77%), Positives = 757/870 (87%), Gaps = 15/870 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+E ++ C+KPS++ LV RL +SNLLGLD NLKNGSLKEGTLN E+LQFK+KFPREVL
Sbjct: 53 LWWKETVESCKKPSSVQLVKRLDFSNLLGLDTNLKNGSLKEGTLNCEILQFKAKFPREVL 112
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIGIDACILVEYAGLNPFGG R +SIPKAGCPVVNLRQTLDDLTRNG+SVC
Sbjct: 113 LCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNLRQTLDDLTRNGFSVC 172
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEEVQGP QARSRK RFISGHAHPGSPYVFGLVG+DHDLDFPEPMPVIG+SRSA+GYC+
Sbjct: 173 IVEEVQGPIQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVIGISRSARGYCM 232
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
++ETMKTYS EDGLTE+ALVTKLRT +YHHLFLHTSLR N+SGT RWGE+GEGG LWG
Sbjct: 233 SLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSGTCRWGEFGEGGRLWG 292
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC RHFEWF+G P+ L+ KVKELYGL++EVTFRNVT+S ENRP PL LGTATQIGAIP
Sbjct: 293 ECNPRHFEWFDGKPLDNLISKVKELYGLDDEVTFRNVTISSENRPHPLTLGTATQIGAIP 352
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIPCLLKVLLPSNC+GLP LY+RDLLLNPPAYE ASTIQAIC+LMS VTC+IP+FTC
Sbjct: 353 TEGIPCLLKVLLPSNCAGLPALYMRDLLLNPPAYETASTIQAICRLMSNVTCAIPDFTCF 412
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE REANHIEFCR+KNVLDEIL M+ N +LN IL+LLMDP VATGLKID++
Sbjct: 413 PPAKLVKLLETREANHIEFCRMKNVLDEILQMHKNCKLNNILKLLMDPASVATGLKIDYD 472
Query: 416 TLVEECRLASVRIGEMISL--DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEI 473
T V EC AS R+ EMI L + ESDQKI SY IP+ FFEDME +WKGRVKRIHIE
Sbjct: 473 TFVNECEWASSRVDEMIFLGSESESDQKISSYPIIPNGFFEDMEFSWKGRVKRIHIEESC 532
Query: 474 AEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVW 533
EVE AAEALSLAVTEDF+PIISRI+AT APLGGPKGEILYAR+H++VWFKGK+F P+VW
Sbjct: 533 TEVERAAEALSLAVTEDFVPIISRIRATNAPLGGPKGEILYARDHQSVWFKGKRFAPSVW 592
Query: 534 ASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSS 593
A +PGE +IKQLKPA+DSKG+KVGEEWF+T KVE++L RY EA KAKAKV++LLR LSS
Sbjct: 593 AGSPGEAEIKQLKPALDSKGKKVGEEWFTTKKVEDSLTRYQEANTKAKAKVVDLLRELSS 652
Query: 594 ELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL-------KDIE-LDGANCLKM 645
EL KIN+L+FASMLL+I KALFAHVSEGRRRKWVFP L K I+ L+G +K+
Sbjct: 653 ELLAKINVLIFASMLLIIAKALFAHVSEGRRRKWVFPTLAAPSDRSKGIKSLEGKVAMKL 712
Query: 646 NGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES 705
GLSPYWFD EG+AV NT++M+SLFLLTGPNGGGKSSLLRSICAA+LLGICG MVPAES
Sbjct: 713 VGLSPYWFDVVEGNAVQNTIEMESLFLLTGPNGGGKSSLLRSICAATLLGICGFMVPAES 772
Query: 706 ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKG 765
A IP+FD+IMLHMKS+DSPADGKSSFQVEMSE+RSIV T RSLVLIDEICRGTETAKG
Sbjct: 773 ALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIVNRVTERSLVLIDEICRGTETAKG 832
Query: 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDG 825
TCIAGSIIE LD GCLGIVSTHLHGIF LPL +N YKAMGT +G+TVPTWKL+ G
Sbjct: 833 TCIAGSIIEALDKAGCLGIVSTHLHGIFDLPLDTQNIVYKAMGTVSAEGRTVPTWKLISG 892
Query: 826 ICRESLAFETAKREGVPETIIQRAEDLYIA 855
ICRESLAFETAK EG+ E IIQRAEDLY++
Sbjct: 893 ICRESLAFETAKNEGISEAIIQRAEDLYLS 922
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 177/341 (51%), Gaps = 32/341 (9%)
Query: 646 NGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA-E 704
+G S + + +E ++ N V +SL L+ + R A I G ++ A +
Sbjct: 793 DGKSSFQVEMSEMRSIVNRVTERSLVLI--------DEICRGTETAKGTCIAGSIIEALD 844
Query: 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT---E 761
A + LH +D P D ++ M + + T + LI ICR + E
Sbjct: 845 KAGCLGIVSTHLH-GIFDLPLDTQNIVYKAMGTVSA--EGRTVPTWKLISGICRESLAFE 901
Query: 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWK 821
TAK I+ +II+ +++ + G + L +++ ++ + +
Sbjct: 902 TAKNEGISEAIIQRAEDLYLSNYAKEGISGKETTDLNFFVSSHPSLNGNGTGKSNLKSNG 961
Query: 822 LVDGICRESLAFETAKREGVPETIIQRA---------------EDLYIACGVNCVMIAAR 866
++ + + ET + GV ++RA ++ + CV+I AR
Sbjct: 962 VI--VKADQPKTETTSKTGVLWKKLERAITKICQKKLIEFHRDKNTLTPAEIQCVLIDAR 1019
Query: 867 EQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIA 926
E+PPPS IGAS VYV+LRPD K Y+GQTDDLDGR+++HR KEGM+ A+FLY +VPGKS+A
Sbjct: 1020 EKPPPSTIGASSVYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLA 1079
Query: 927 CQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETLTV 967
CQ+ETLLIN+L GF L N+ADGKHRNFGT++ + +TV
Sbjct: 1080 CQLETLLINRLPDHGFQLTNVADGKHRNFGTANLLSDNVTV 1120
>gi|351720948|ref|NP_001238217.1| DNA mismatch repair protein [Glycine max]
gi|61696669|gb|AAX53095.1| DNA mismatch repair protein [Glycine max]
Length = 1130
Score = 1373 bits (3553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/865 (75%), Positives = 749/865 (86%), Gaps = 13/865 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+ERLQMCRK ST+ L+ RL++SNLLGL+ NLKNGSLKEGTLNWEMLQFKSKFPR+VL
Sbjct: 83 LWWKERLQMCRKFSTVQLIERLEFSNLLGLNSNLKNGSLKEGTLNWEMLQFKSKFPRQVL 142
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVG+FYEA GIDACILVEY GLNP GGLR +SIP+A CPVVNLRQTLDDLT NGYSVC
Sbjct: 143 LCRVGEFYEAWGIDACILVEYVGLNPIGGLRSDSIPRASCPVVNLRQTLDDLTTNGYSVC 202
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE QGP+QARSRK RFISGHAHPG+PYV+GL +DHDL+FPEPMPV+G+S SA+GYCI
Sbjct: 203 IVEEAQGPSQARSRKRRFISGHAHPGNPYVYGLATVDHDLNFPEPMPVVGISHSARGYCI 262
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
+LETMKTYS ED LTE+A+VTKLRT +YH+LFLHTSLR+N+ GT WGE+GEGGLLWG
Sbjct: 263 NMVLETMKTYSSEDCLTEEAVVTKLRTCQYHYLFLHTSLRRNSCGTCNWGEFGEGGLLWG 322
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC +RHF+WF+G+PV +LL KVKELY +++EVTFRN TVS +R RPL LGT+TQIGAIP
Sbjct: 323 ECSSRHFDWFDGNPVSDLLAKVKELYSIDDEVTFRNTTVSSGHRARPLTLGTSTQIGAIP 382
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP LLKVLLPSNC+GLP+LY+R+LLLNPP+YEIAS IQA CKLMS VTCSIPEFTC
Sbjct: 383 TEGIPSLLKVLLPSNCNGLPVLYIRELLLNPPSYEIASKIQATCKLMSSVTCSIPEFTCV 442
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE RE NH+EFCRIKNVLDEIL MY SELNEIL+ L++PTWVATGL+IDFE
Sbjct: 443 SSAKLVKLLEWREVNHMEFCRIKNVLDEILQMYSTSELNEILKHLIEPTWVATGLEIDFE 502
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
TLV C +AS +IGE++SLD E+DQKI S+ IP EFFEDMES WKGR+KRIHI+
Sbjct: 503 TLVAGCEIASSKIGEIVSLDDENDQKINSFSFIPHEFFEDMESKWKGRIKRIHIDDVFTA 562
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
VE AAEAL +AVTEDF+P++SRIKA APLGGPKGEI YARE EAVWFKGK+F P +WA
Sbjct: 563 VEKAAEALHIAVTEDFVPVVSRIKAIVAPLGGPKGEISYAREQEAVWFKGKRFTPNLWAG 622
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
+PGEEQIKQL+ A+DSKGRKVGEEWF+T KVE AL RYHEA AKAK +VLE+LRGL++EL
Sbjct: 623 SPGEEQIKQLRHALDSKGRKVGEEWFTTPKVEAALTRYHEANAKAKERVLEILRGLAAEL 682
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL------KDIE-LDGANCLKMNGL 648
Q INILVF+SMLLVI KALFAH SEGRRR+WVFP L +D++ LD + +K++GL
Sbjct: 683 QYSINILVFSSMLLVIAKALFAHASEGRRRRWVFPTLVESHGFEDVKSLDKTHGMKISGL 742
Query: 649 SPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
PYWF AEG V N VDMQSLFLLTGPNGGGKSS LRSICAA+LLGICGLMVPAESA I
Sbjct: 743 LPYWFHIAEG-VVRNDVDMQSLFLLTGPNGGGKSSFLRSICAAALLGICGLMVPAESALI 801
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
PYFD+I LHMKSYDSPAD KSSFQVEMSE+RSI+ TT+RSLVL+DEICRGTETAKGTCI
Sbjct: 802 PYFDSITLHMKSYDSPADKKSSFQVEMSELRSIIGGTTNRSLVLVDEICRGTETAKGTCI 861
Query: 769 AGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
AGSIIETLD IGCLGIVSTHLHGIF+LPL KN +KAMGT +DGQ +PTWKL DG+C+
Sbjct: 862 AGSIIETLDGIGCLGIVSTHLHGIFTLPLNKKNTVHKAMGTTSIDGQIMPTWKLTDGVCK 921
Query: 829 ESLAFETAKREGVPETIIQRAEDLY 853
ESLAFETAKREG+PE I++RAE LY
Sbjct: 922 ESLAFETAKREGIPEHIVRRAEYLY 946
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 88/102 (86%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
+ C++I RE PPPS++G+S VYVM RPDKKLY+G+TDDL+GR+R HR KEGM ASFLY
Sbjct: 1026 IKCLIIGTRELPPPSVVGSSSVYVMFRPDKKLYVGETDDLEGRVRRHRLKEGMHDASFLY 1085
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSS 959
F+VPGKS+ACQ E+LLINQL QGF L+NIADGKHRNFGTS+
Sbjct: 1086 FLVPGKSLACQFESLLINQLSGQGFQLSNIADGKHRNFGTSN 1127
>gi|356575134|ref|XP_003555697.1| PREDICTED: uncharacterized protein LOC100798513 [Glycine max]
Length = 1134
Score = 1368 bits (3542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/865 (75%), Positives = 743/865 (85%), Gaps = 13/865 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+ERLQMCRK ST+ L+ RL++SNLLGL+ NLKNGSLKEGTLNWEMLQFKSKFPR+VL
Sbjct: 85 LWWKERLQMCRKLSTVQLIERLEFSNLLGLNSNLKNGSLKEGTLNWEMLQFKSKFPRQVL 144
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVG+FYEA GIDACILVEY GLNP GGLR +SIP+AGCPVVNLRQTLDDLT NGYSVC
Sbjct: 145 LCRVGEFYEAWGIDACILVEYVGLNPIGGLRSDSIPRAGCPVVNLRQTLDDLTTNGYSVC 204
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE QGP+QARSRK RFISGHAHPG+PYV+GL +DHDL+FPEPMPV+G+S SA+GYCI
Sbjct: 205 IVEEAQGPSQARSRKRRFISGHAHPGNPYVYGLATVDHDLNFPEPMPVVGISHSARGYCI 264
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
+LETMKTYS ED LTE+A+VTKLRT +YHHLFLHTS+RQN+SGT WGE+GEGGLLWG
Sbjct: 265 NMVLETMKTYSSEDCLTEEAVVTKLRTCQYHHLFLHTSIRQNSSGTCDWGEFGEGGLLWG 324
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC +RHFEWF+G+P+ +LL KVKELY L+ EVTFRN TV NR +PL LGT+TQIGAIP
Sbjct: 325 ECSSRHFEWFDGNPISDLLAKVKELYSLDEEVTFRNATVYSGNRAQPLTLGTSTQIGAIP 384
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP LLKVLL NC+GLP LY+RDLLLNPP+YEIAS IQA CKLMS VTCSIPEFTC
Sbjct: 385 TEGIPSLLKVLLSRNCNGLPALYIRDLLLNPPSYEIASKIQATCKLMSSVTCSIPEFTCV 444
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE RE NH+EFCRIKNVLDEIL M SELN+IL+ L+DPTWVATGL+IDFE
Sbjct: 445 SSAKLVKLLEWREVNHMEFCRIKNVLDEILLMNKTSELNDILKHLIDPTWVATGLEIDFE 504
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
TLV C +AS +IG++ISLDG +DQKI S+ IP EFFED+ES WKGR+KRIHI+
Sbjct: 505 TLVAGCEVASTKIGDIISLDGGNDQKINSFSLIPHEFFEDIESKWKGRIKRIHIDDVFTA 564
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
VE AAEAL +AVTEDF+PI+SRIKAT +PLGGPKGEI YAREHEAVWFKGK+F P +WA
Sbjct: 565 VEKAAEALHIAVTEDFVPILSRIKATVSPLGGPKGEISYAREHEAVWFKGKRFTPNLWAG 624
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
+PGEEQIKQL A+DSKG+K GEEWF+TLKVE AL RYHEA KAK +VLE+LRGL++EL
Sbjct: 625 SPGEEQIKQLSHALDSKGKKAGEEWFTTLKVEAALTRYHEANGKAKERVLEILRGLAAEL 684
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL------KDIE-LDGANCLKMNGL 648
Q INILVF+S LLVI KALFAH SEGRRR+WVFP L +D++ L+ + +K+ GL
Sbjct: 685 QYNINILVFSSTLLVIAKALFAHASEGRRRRWVFPTLVESHGFEDVKSLNKIHGMKIVGL 744
Query: 649 SPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
PYW AEG V N VDMQSLFLLTGPNGGGKSSLLRSICAA+LLGICGLMVPAESA I
Sbjct: 745 LPYWLHVAEG-VVRNDVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGLMVPAESAHI 803
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
PYFD+IMLHM SYDSPAD KSSFQVEMSE+RSI+ TT +SLVLIDEICRGTETAKGTCI
Sbjct: 804 PYFDSIMLHMNSYDSPADKKSSFQVEMSELRSIIGGTTKKSLVLIDEICRGTETAKGTCI 863
Query: 769 AGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
AGSIIETLD IGCLGIVSTHLHGIF+LPL I N +KAMGT +DGQT+PTWKL DG+CR
Sbjct: 864 AGSIIETLDRIGCLGIVSTHLHGIFTLPLNINNTVHKAMGTTSIDGQTIPTWKLTDGVCR 923
Query: 829 ESLAFETAKREGVPETIIQRAEDLY 853
ESLAFETA+REGVPE II+RAE +Y
Sbjct: 924 ESLAFETARREGVPELIIRRAEYIY 948
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 116/155 (74%), Gaps = 9/155 (5%)
Query: 812 LDGQTVPTWKLVDG-----ICRESLAFETAKREGVPETII-QRAEDLYIA-CGVNCVMIA 864
L+G +P+ + + G + RE + E+A + I+ Q+++++ + G+ C+ I
Sbjct: 979 LNGTHLPSKRFLSGANQTEVLREEV--ESAVTVICQDHIMEQKSKNIALELTGIKCLQIR 1036
Query: 865 AREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKS 924
REQPPPS++G+S VYVM RPDKKLY+G+TDDL+GR+RAHR KEGM ASFLYF+VPGKS
Sbjct: 1037 TREQPPPSVVGSSSVYVMFRPDKKLYVGETDDLEGRVRAHRLKEGMHDASFLYFLVPGKS 1096
Query: 925 IACQIETLLINQLYSQGFLLANIADGKHRNFGTSS 959
+ACQ+E+LLINQL S+GF L N ADGKHRNFGTS+
Sbjct: 1097 LACQLESLLINQLSSRGFQLTNTADGKHRNFGTSN 1131
>gi|357439811|ref|XP_003590183.1| DNA mismatch repair protein mutS [Medicago truncatula]
gi|355479231|gb|AES60434.1| DNA mismatch repair protein mutS [Medicago truncatula]
Length = 1230
Score = 1343 bits (3477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/902 (72%), Positives = 741/902 (82%), Gaps = 47/902 (5%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+E LQ C+KPST++L+ RL+YSNLLGLD NLKNG+LK GTLN ++LQFKS+FPR+VL
Sbjct: 140 LWWKEELQTCKKPSTMNLIERLEYSNLLGLDSNLKNGTLKAGTLNCDILQFKSQFPRQVL 199
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEA+GIDACILVEYAGLNPFGGLR +SIPKAGCPVVNLRQTLDDLTRNGYSVC
Sbjct: 200 LCRVGDFYEALGIDACILVEYAGLNPFGGLRSDSIPKAGCPVVNLRQTLDDLTRNGYSVC 259
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPV------------ 168
IVEEVQGP QARS+K RFISGHAHPGSPYV+GLVG DHD+DFPEPMPV
Sbjct: 260 IVEEVQGPAQARSKKRRFISGHAHPGSPYVYGLVGADHDIDFPEPMPVVDRREREHWVRG 319
Query: 169 -----------------------IGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKL 205
IG+S SA+GYCI ++ETMKTYS ED LTE+A+VTKL
Sbjct: 320 GKGIGSTSLDYIGMINFNNASFFIGISHSARGYCISMVVETMKTYSTEDCLTEEAVVTKL 379
Query: 206 RTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKEL 265
RT +YHHLFLHTSLR+N+ GTS+W E+GEGGLLWGEC +RH EWF+G+PV +LL+KVKEL
Sbjct: 380 RTCQYHHLFLHTSLRRNSCGTSKWAEFGEGGLLWGECSSRHSEWFDGNPVSDLLVKVKEL 439
Query: 266 YGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVR 325
YGL++EV FRNVTVS NR +PL LGT+TQIG IPT+GIP LLKVLLP +CSGLPILYVR
Sbjct: 440 YGLDHEVLFRNVTVSSGNRAQPLTLGTSTQIGVIPTDGIPSLLKVLLPPHCSGLPILYVR 499
Query: 326 DLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHIEFCRIKNV 380
DLLLNPP+YEIAS IQA C+LMS VTCSIPEFTC + KLLE +EANHIE CRIKNV
Sbjct: 500 DLLLNPPSYEIASKIQATCRLMSSVTCSIPEFTCVSSAKIAKLLEWKEANHIELCRIKNV 559
Query: 381 LDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQ 440
LDEILHMY SELNEIL+ L+ PTWVATGL IDF+TLV C +AS +I E+ISLDGE+DQ
Sbjct: 560 LDEILHMYRKSELNEILKHLIGPTWVATGLDIDFKTLVAGCEVASRKIDEVISLDGETDQ 619
Query: 441 KICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKA 500
K+ S+ IP EFFEDMES WKGR+K +I + V+ AAE L+LAVTEDF P++SRIKA
Sbjct: 620 KVSSFSAIPDEFFEDMESVWKGRIKTTNINDVLTSVDKAAEDLNLAVTEDFAPVVSRIKA 679
Query: 501 TTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEW 560
+ + L PKGEI Y+RE EAVWFKGK F P +W TPGEEQIK LK A+DSKGRKVGEEW
Sbjct: 680 SMSQLRAPKGEISYSREQEAVWFKGKCFIPNIWTGTPGEEQIKHLKHALDSKGRKVGEEW 739
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T KVE AL RYHEA KA +VLELLRGL++ELQ+ INI+VF+S LLVI KAL+AHVS
Sbjct: 740 FTTTKVEAALARYHEANVKANTRVLELLRGLAAELQSHINIIVFSSTLLVITKALYAHVS 799
Query: 621 EGRRRKWVFPALKDIEL-------DGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLL 673
EGRRRKWVFP + + + D +K+ GL PYWF+ AEG AV NTVDMQSLFLL
Sbjct: 800 EGRRRKWVFPTIVESQKLEDGMPSDKNRKMKIVGLLPYWFNIAEGGAVLNTVDMQSLFLL 859
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPNGGGKSSLLRSICAA+LLGICGLMVPAESA IPYFD+IMLHMKSYDSPAD KSSFQV
Sbjct: 860 TGPNGGGKSSLLRSICAAALLGICGLMVPAESAVIPYFDSIMLHMKSYDSPADHKSSFQV 919
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793
EMSE+RSI+ TT RSLVL+DEICRGTETAKGTCIAGSIIETLD GCLGIVSTHLH IF
Sbjct: 920 EMSELRSIIAGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRSGCLGIVSTHLHDIF 979
Query: 794 SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY 853
+LPL I N +KAMGT +DGQT PTW L DG+C+ESLAFETAKREG+PE IIQRAEDLY
Sbjct: 980 TLPLNITNTVHKAMGTTCIDGQTKPTWMLTDGVCKESLAFETAKREGIPEIIIQRAEDLY 1039
Query: 854 IA 855
++
Sbjct: 1040 LS 1041
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 90/102 (88%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
+ C +I RE PPP IG+S VYVMLRPDKKLY+G+TD+L+ R+RAHR KEGMQ ASFLY
Sbjct: 1126 IKCFLIGTREWPPPMTIGSSSVYVMLRPDKKLYVGETDNLEDRVRAHRSKEGMQDASFLY 1185
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSS 959
F+VPGKS+ACQIETLLINQL ++GFLL+NIADGKHRNFGTS+
Sbjct: 1186 FLVPGKSLACQIETLLINQLPNRGFLLSNIADGKHRNFGTSN 1227
>gi|75911776|gb|ABA29739.1| DNA mismatch repair protein [Phaseolus vulgaris]
Length = 1126
Score = 1340 bits (3467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/864 (73%), Positives = 740/864 (85%), Gaps = 13/864 (1%)
Query: 2 WWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLL 61
WW+ERLQMC+K ST+ L+ RL++SNLLGLD LKNGS+KEGTLNWEMLQFKSKFPR+VLL
Sbjct: 85 WWKERLQMCKKFSTVQLIQRLEFSNLLGLDSKLKNGSVKEGTLNWEMLQFKSKFPRQVLL 144
Query: 62 CRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCI 121
CRVGDFYEA GIDAC+LVEYAG+NP GGL+ +S+P+AGCPVVNLRQTLDDLT+NGYSVCI
Sbjct: 145 CRVGDFYEAWGIDACVLVEYAGINPCGGLQSDSVPRAGCPVVNLRQTLDDLTQNGYSVCI 204
Query: 122 VEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCII 181
+EEVQGPTQARSRK RFISGHAHPG+PYV+GL +DHDL+FPEPMPVIG+S SA+GYCI
Sbjct: 205 IEEVQGPTQARSRKRRFISGHAHPGNPYVYGLAAVDHDLNFPEPMPVIGISHSARGYCIN 264
Query: 182 SILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGE 241
+LETMKTYS ED LTE+A+VTKLRT +YHHLFLHTSL Q++ GTS+WGE+GEGGLLWGE
Sbjct: 265 MVLETMKTYSYEDCLTEEAIVTKLRTCQYHHLFLHTSLTQDSCGTSKWGEFGEGGLLWGE 324
Query: 242 CIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPT 301
C +RHFEWF+G P+ +LL+KVKELYGL+ EVTFRN TVS +R RPL LGT+TQIGAI T
Sbjct: 325 CSSRHFEWFDGSPLSDLLVKVKELYGLDVEVTFRNTTVSSRHRARPLTLGTSTQIGAIHT 384
Query: 302 EGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-- 359
EGIP LLKVLL +C+GLP+LY+R+LLLNPP+YEIAS IQ CKLMS +TCSIPEFTC
Sbjct: 385 EGIPSLLKVLLSPSCNGLPVLYIRNLLLNPPSYEIASKIQETCKLMSSLTCSIPEFTCVS 444
Query: 360 ---LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFET 416
LVKLLE RE NH+EFCRIKNVLDEILHMY SELNEIL+ L+DPTW TGL IDFET
Sbjct: 445 SAKLVKLLEWREVNHMEFCRIKNVLDEILHMYKTSELNEILKNLIDPTWATTGLDIDFET 504
Query: 417 LVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEV 476
LV C +AS +I E+ISLDG +DQKI S IP EFFED ES WKGR+KR+HI+ V
Sbjct: 505 LVSGCEVASSKISEIISLDGGNDQKINSLSIIPYEFFEDTESKWKGRIKRVHIDEVFTAV 564
Query: 477 EMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAST 536
+ AAE L +AVTEDF+P++SR+KAT APLGGP+GEI YAREHEAVWF+GK+F P++W+ +
Sbjct: 565 QKAAEVLHIAVTEDFVPVVSRVKATIAPLGGPRGEISYAREHEAVWFRGKRFTPSLWSGS 624
Query: 537 PGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQ 596
PGEEQIKQL+ A+DSKG++VGEEWF+T KVE AL RYHEA AKA +VLE+LRGL++EL
Sbjct: 625 PGEEQIKQLRHALDSKGKRVGEEWFTTPKVEAALTRYHEANAKATERVLEILRGLATELH 684
Query: 597 TKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL------KDIE-LDGANCLKMNGLS 649
INILVF+S LLVI KALFAH SEGRRR+WVFP L +D++ D + +K+ GL+
Sbjct: 685 YSINILVFSSTLLVITKALFAHASEGRRRRWVFPTLAESNGFEDVKSSDKIHGMKIVGLA 744
Query: 650 PYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 709
PYWF AEG V N VDMQSLFLLTGPNGGGKSSLLRSICAA+LLGICGLMVPAESA IP
Sbjct: 745 PYWFHIAEG-IVRNDVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGLMVPAESAVIP 803
Query: 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 769
YFD+I LHMKSYDSPAD KSSFQVEMSE+RSI+ TT RSLVL+DEICRGTETAKGTCIA
Sbjct: 804 YFDSITLHMKSYDSPADKKSSFQVEMSELRSIIGGTTKRSLVLVDEICRGTETAKGTCIA 863
Query: 770 GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 829
GSIIETL+ IGCLG+VSTHLHGIF+LPL IK+ +KAMGT +DGQ +PTWKL DG+C+E
Sbjct: 864 GSIIETLERIGCLGVVSTHLHGIFTLPLNIKSTVHKAMGTTCIDGQILPTWKLTDGVCKE 923
Query: 830 SLAFETAKREGVPETIIQRAEDLY 853
SL FETA REG+PE II+RAE LY
Sbjct: 924 SLTFETAIREGIPEPIIRRAECLY 947
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 89/102 (87%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
+ C++I REQPPPS++G+S VYV+ PDKKLY+G+TDDL+GR+R HR KEGM ASFLY
Sbjct: 1022 IKCLLIGKREQPPPSVVGSSSVYVIFTPDKKLYVGETDDLEGRVRRHRLKEGMDEASFLY 1081
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSS 959
F+VPGKS+ACQ E+LLINQL SQGF L+N+ADGKHRNFGTS+
Sbjct: 1082 FLVPGKSLACQFESLLINQLSSQGFQLSNMADGKHRNFGTSN 1123
>gi|60650887|gb|AAX31514.1| DNA mismatch repair protein [Phaseolus vulgaris]
Length = 1126
Score = 1340 bits (3467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/864 (73%), Positives = 741/864 (85%), Gaps = 13/864 (1%)
Query: 2 WWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLL 61
WW+ERLQMC+K ST+ L+ RL++SNLLGLD LKNGS+KEGTLNWEMLQFKSKFPR+VLL
Sbjct: 85 WWKERLQMCKKFSTVQLIQRLEFSNLLGLDSKLKNGSVKEGTLNWEMLQFKSKFPRQVLL 144
Query: 62 CRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCI 121
CRVG+FYEA GIDAC+LVEYAGLNP GGL+ +S+P+AGCPVVNLRQTLDDLT+NGYSVCI
Sbjct: 145 CRVGEFYEAWGIDACVLVEYAGLNPCGGLQSDSVPRAGCPVVNLRQTLDDLTQNGYSVCI 204
Query: 122 VEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCII 181
+EEVQGPTQARSRK RFISGHAHPG+PYV+GL +DHDL+FPEPMPVIG+S SA+GYCI
Sbjct: 205 IEEVQGPTQARSRKRRFISGHAHPGNPYVYGLAAVDHDLNFPEPMPVIGISHSARGYCIN 264
Query: 182 SILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGE 241
+LETMKTYS ED LTE+A+VTKLRT +YHHLFLHTSL Q++ GTS+WGE+GEGGLLWGE
Sbjct: 265 MVLETMKTYSYEDCLTEEAIVTKLRTCQYHHLFLHTSLTQDSCGTSKWGEFGEGGLLWGE 324
Query: 242 CIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPT 301
C +RHFEWF+G P+ +LL+KVKELYGL++EVTFRN TVS +R RPL LGT+TQIGAI T
Sbjct: 325 CSSRHFEWFDGSPLSDLLVKVKELYGLDDEVTFRNTTVSSRHRARPLTLGTSTQIGAIHT 384
Query: 302 EGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-- 359
EGIP LLKVLL +C+GLP+LY+R+LLLNPP+YEIAS IQ CKLMS +TCSIPEFTC
Sbjct: 385 EGIPSLLKVLLSPSCNGLPVLYIRNLLLNPPSYEIASKIQETCKLMSSLTCSIPEFTCVS 444
Query: 360 ---LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFET 416
LVKLLE RE NH+EFCRIKNVLDEILHMY SELNEIL+ L+DPTW TGL IDFET
Sbjct: 445 SAKLVKLLEWREVNHMEFCRIKNVLDEILHMYKTSELNEILKNLIDPTWATTGLDIDFET 504
Query: 417 LVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEV 476
LV C +AS +I E+ISLDG +DQKI S IP EFFED ES WKGR+KR+HI+ V
Sbjct: 505 LVSGCEVASSKISEIISLDGGNDQKINSLSIIPYEFFEDTESKWKGRIKRVHIDEVFTAV 564
Query: 477 EMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAST 536
+ AAE L +AVTEDF+P++SR+KAT APLGGP+GEI YAREHEAVWF+GK+F P++W+ +
Sbjct: 565 QKAAEVLHIAVTEDFVPVVSRVKATIAPLGGPRGEISYAREHEAVWFRGKRFTPSLWSGS 624
Query: 537 PGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQ 596
PGEEQIKQL+ A+DSKG++VGEEWF+T KVE AL RYHEA AKA +VLE+LR L++EL
Sbjct: 625 PGEEQIKQLRHALDSKGKRVGEEWFTTPKVEAALTRYHEANAKATERVLEILRELATELH 684
Query: 597 TKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL------KDIE-LDGANCLKMNGLS 649
INILVF+S LLVI KALFAH SEGRRR+WVFP L +D++ D + +K+ GL+
Sbjct: 685 YSINILVFSSTLLVITKALFAHASEGRRRRWVFPTLAESNGFEDVKSSDKIHGMKIVGLA 744
Query: 650 PYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 709
PYWF AEG V N VDMQSLFLLTGPNGGGKSSLLRSICAA+LLGICGLMVPAESA IP
Sbjct: 745 PYWFHIAEG-IVRNDVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGLMVPAESAVIP 803
Query: 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 769
YFD+I LHMKSYDSPAD KSSFQVEMSE+RSI+ TT RSLVL+DEICRGTETAKGTCIA
Sbjct: 804 YFDSITLHMKSYDSPADKKSSFQVEMSELRSIIGGTTKRSLVLVDEICRGTETAKGTCIA 863
Query: 770 GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 829
GSIIETL+ IGCLG+VSTHLHGIF+LPL IK+ +KAMGT +DGQ +PTWKL DG+C+E
Sbjct: 864 GSIIETLERIGCLGVVSTHLHGIFTLPLNIKSTVHKAMGTTCIDGQILPTWKLTDGVCKE 923
Query: 830 SLAFETAKREGVPETIIQRAEDLY 853
SLAFETA REG+PE II+RAE LY
Sbjct: 924 SLAFETAIREGIPEPIIRRAECLY 947
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 89/102 (87%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
+ C++I REQPPPS++G+S VYV+ PDKKLY+G+TDDL+GR+R HR KEGM ASFLY
Sbjct: 1022 IKCLLIGKREQPPPSVVGSSSVYVIFTPDKKLYVGETDDLEGRVRRHRLKEGMDEASFLY 1081
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSS 959
F+VPGKS+ACQ E+LLINQL SQGF L+N+ADGKHRNFGTS+
Sbjct: 1082 FLVPGKSLACQFESLLINQLSSQGFQLSNMADGKHRNFGTSN 1123
>gi|357167934|ref|XP_003581402.1| PREDICTED: uncharacterized protein LOC100835189 [Brachypodium
distachyon]
Length = 1126
Score = 1319 bits (3413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/867 (71%), Positives = 733/867 (84%), Gaps = 10/867 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
MWW+E+++ CRKPS++ L RL YSN+LGLD L+NGSLK+GTLN EMLQFKSKFPREVL
Sbjct: 76 MWWKEKMESCRKPSSVQLTQRLVYSNILGLDPTLRNGSLKDGTLNMEMLQFKSKFPREVL 135
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIG DACILVE+AGLNPFGGLR +SIPKAGCP++NLRQTLDDLTR+GYSVC
Sbjct: 136 LCRVGDFYEAIGFDACILVEHAGLNPFGGLRSDSIPKAGCPIMNLRQTLDDLTRSGYSVC 195
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE+QGPTQAR+RK RFISGHAHPGSPYVFGL +DHDL+FP+PMPV+G+SRSAKGYC+
Sbjct: 196 IVEEIQGPTQARARKGRFISGHAHPGSPYVFGLAEVDHDLEFPDPMPVVGISRSAKGYCL 255
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH+SLR N+SGTSRWGE+GEGGLLWG
Sbjct: 256 ISVLETMKTYSAEEGLTEEAVVTKLRICRYHHLYLHSSLRNNSSGTSRWGEFGEGGLLWG 315
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC + FEWF+G P+ ELL KV+E+YGL+ + FRNVTVS E RP+PL+LGTATQIG I
Sbjct: 316 ECSGKCFEWFDGSPIEELLCKVREIYGLDEKTNFRNVTVSLEGRPQPLYLGTATQIGVIQ 375
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP LLK+LLP N GLP +Y+RDLLLNPP++++AS IQ C+LM +TCSIPEFTC
Sbjct: 376 TEGIPSLLKMLLPPNYGGLPSMYIRDLLLNPPSFDVASAIQEACRLMGSITCSIPEFTCI 435
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE +E NHIEFCRIKNVLD+I+ M GN+EL+ I++ L++P V TGLK+D +
Sbjct: 436 PSAKLVKLLESKEVNHIEFCRIKNVLDDIILMNGNTELSAIMDKLLEPASVVTGLKVDAD 495
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
L+ EC L S RIGE+ISL GESDQ I S + IP EFF DMES+WKGRVKR+H E E
Sbjct: 496 ILIRECSLISQRIGEVISLGGESDQAITSSEYIPKEFFNDMESSWKGRVKRVHAEEEFTN 555
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
V++AAEALS AVTEDFLPII R+K+ + GG KGEI YA+EHEAVWFKGK+F P VWA+
Sbjct: 556 VDVAAEALSTAVTEDFLPIIVRVKSVISSHGGSKGEISYAKEHEAVWFKGKRFTPNVWAN 615
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGE+QIKQLKPA+DSKGRKVGEEWF+T+KVE AL RYHEA AK KVLELLRGLSSEL
Sbjct: 616 TPGEQQIKQLKPAIDSKGRKVGEEWFTTIKVENALARYHEACDSAKGKVLELLRGLSSEL 675
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELD-----GANCLKMNGLSP 650
Q KINILVF S LL+I KALF HVSEG RR WV PA+ + D G++ + + L P
Sbjct: 676 QDKINILVFCSTLLIIAKALFGHVSEGLRRGWVLPAISPLSKDYSTEEGSSEMDLLRLFP 735
Query: 651 YWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
YW D+ +G+A+ N V+M SLF+LTGPNGGGKSS+LRS+CAA+LLGICGLMVPA SA IP+
Sbjct: 736 YWLDSNQGNAILNDVNMHSLFILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIPH 795
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
FD+IMLHMK+YDSPADGKSSFQ+EMSEIRS+V+ T RSLVLIDEICRGTETAKGTCIAG
Sbjct: 796 FDSIMLHMKAYDSPADGKSSFQIEMSEIRSLVSRATGRSLVLIDEICRGTETAKGTCIAG 855
Query: 771 SIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
SIIE LD++GCLGI+STHLHGIF LPL + N +KAMGTE ++G PTW+L+DGICRES
Sbjct: 856 SIIERLDDVGCLGIISTHLHGIFDLPLSLGNTDFKAMGTEVVNGCIQPTWRLMDGICRES 915
Query: 831 LAFETAKREGVPETIIQRAEDLYIACG 857
LAF+TA++EG+P+ II+RAE+LY G
Sbjct: 916 LAFQTARKEGMPDLIIKRAEELYSTMG 942
Score = 153 bits (386), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 137/256 (53%), Gaps = 35/256 (13%)
Query: 721 YDSPAD-GKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT---ETAKGTCIAGSII--- 773
+D P G + F+ +E+ + T R L+D ICR + +TA+ + II
Sbjct: 878 FDLPLSLGNTDFKAMGTEVVNGCIQPTWR---LMDGICRESLAFQTARKEGMPDLIIKRA 934
Query: 774 -ETLDNIGCLGIVSTHLHG----------IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKL 822
E +G ST HG + +P + N G L + V +
Sbjct: 935 EELYSTMGRSKTSSTVHHGPSVAKSKASGLVDMPDGLGNGLELPSGAFALLRKDVEI--I 992
Query: 823 VDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVM 882
V IC++ L KR +I + E V CV + AREQPPPS +G S +Y++
Sbjct: 993 VTAICKDKLLDLYNKR-----SISELVE-------VVCVTVGAREQPPPSTVGRSSIYIV 1040
Query: 883 LRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGF 942
+R D KLY+GQTDDL GR+ HR KEGMQ A+ LY VVPGKS+ACQ+ETLLINQL S+GF
Sbjct: 1041 IRRDNKLYVGQTDDLVGRLAVHRSKEGMQGATILYIVVPGKSVACQLETLLINQLPSKGF 1100
Query: 943 LLANIADGKHRNFGTS 958
L N ADGKHRNFG S
Sbjct: 1101 KLTNKADGKHRNFGMS 1116
>gi|115459322|ref|NP_001053261.1| Os04g0507000 [Oryza sativa Japonica Group]
gi|113564832|dbj|BAF15175.1| Os04g0507000 [Oryza sativa Japonica Group]
Length = 1132
Score = 1309 bits (3388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/896 (68%), Positives = 740/896 (82%), Gaps = 10/896 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+E+++ CRKPS++ L RL YSN+LGLD L+NGSLK+G+LN EMLQFKSKFPREVL
Sbjct: 81 LWWKEKMERCRKPSSMQLTQRLVYSNILGLDPTLRNGSLKDGSLNTEMLQFKSKFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEA+G DACILVE+AGLNPFGGLR +SIPKAGCPV+NLRQTLDDLTR GYSVC
Sbjct: 141 LCRVGDFYEAVGFDACILVEHAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRCGYSVC 200
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE+QGPTQAR+RK RFISGHAHPGSPYVFGL +DHD++FP+PMPV+G+SRSAKGYC+
Sbjct: 201 IVEEIQGPTQARARKGRFISGHAHPGSPYVFGLAEVDHDVEFPDPMPVVGISRSAKGYCL 260
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH+SLR N+SGTSRWGE+GEGGLLWG
Sbjct: 261 ISVLETMKTYSAEEGLTEEAVVTKLRICRYHHLYLHSSLRNNSSGTSRWGEFGEGGLLWG 320
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC + FEWF+G+P+ ELL KV+E+YGLE + FRNV+VS E RP+PL+LGTATQIG IP
Sbjct: 321 ECSGKSFEWFDGNPIEELLCKVREIYGLEEKTVFRNVSVSLEGRPQPLYLGTATQIGVIP 380
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP LLK++LP N GLP LY+RDLLLNPP++++AS++Q C+LM +TCSIPEFTC
Sbjct: 381 TEGIPSLLKIVLPPNFGGLPSLYIRDLLLNPPSFDVASSVQEACRLMGSITCSIPEFTCI 440
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE +E NHIEFCRIKNVLDE+L M N+EL+ IL L+DP + TG K++ +
Sbjct: 441 PAAKLVKLLESKEVNHIEFCRIKNVLDEVLFMGSNAELSAILNKLLDPAAIVTGFKVEAD 500
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
LV EC S RI E+ISL GESDQ I S + IP EFF DMES+WKGRVKR+H E E +
Sbjct: 501 ILVNECSFISQRIAEVISLGGESDQAITSSEYIPKEFFNDMESSWKGRVKRVHAEEEFSN 560
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
V++AAEALS AV EDFLPIISR+K+ + G KGEI YA+EHE+VWFKG++F P VWA+
Sbjct: 561 VDIAAEALSTAVIEDFLPIISRVKSVMSSNGSSKGEISYAKEHESVWFKGRRFTPNVWAN 620
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGE QIKQLKPA+DSKGRKVGEEWF+T+KVE AL RYHEA AK KVLELLRGLSSEL
Sbjct: 621 TPGELQIKQLKPAIDSKGRKVGEEWFTTIKVENALTRYHEACDNAKRKVLELLRGLSSEL 680
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDG-----ANCLKMNGLSP 650
Q KIN+LVF S +L+I KALF HVSEGRRR WV P + + D ++ ++++G P
Sbjct: 681 QDKINVLVFCSTMLIITKALFGHVSEGRRRGWVLPTISPLCKDNVTEEISSEMELSGTFP 740
Query: 651 YWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
YW D +G+A+ N V M SLF+LTGPNGGGKSS+LRS+CAA+LLGICGLMVPA SA IP+
Sbjct: 741 YWLDTNQGNAILNDVHMHSLFILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIPH 800
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
FD+IMLHMK+YDSPADGKSSFQ+EMSEIRS+V T+RSLVLIDEICRGTETAKGTCIAG
Sbjct: 801 FDSIMLHMKAYDSPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAG 860
Query: 771 SIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
SIIE LDN+GC+GI+STHLHGIF LPL + N +KAMGTE +D PTWKL+DGICRES
Sbjct: 861 SIIERLDNVGCIGIISTHLHGIFDLPLSLHNTDFKAMGTEIIDRCIQPTWKLMDGICRES 920
Query: 831 LAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPD 886
LAF+TA++EG+P+ II+RAE+LY+A N ++ SI ++ ++ +P+
Sbjct: 921 LAFQTARKEGMPDLIIRRAEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEKPN 976
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 84/108 (77%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
V CV + AREQPPPS +G S +YV++R D KLYIGQTDDL GR+ AHR KEGMQ A+ LY
Sbjct: 1023 VVCVAVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQTDDLVGRLSAHRSKEGMQDATILY 1082
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETL 965
+VPGKSIACQ+ETLLINQL +GF L N ADGKHRNFG S P E +
Sbjct: 1083 ILVPGKSIACQLETLLINQLPLKGFKLINKADGKHRNFGISLVPGEAI 1130
>gi|413918868|gb|AFW58800.1| DNA mismatch repair protein [Zea mays]
Length = 1131
Score = 1308 bits (3385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/890 (69%), Positives = 735/890 (82%), Gaps = 15/890 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
MWW+E+++ CRKPS++ L RL YSN+LGLD NL+NGSLK+GTLN E+L FKSKFPREVL
Sbjct: 77 MWWKEKMERCRKPSSIQLTQRLVYSNILGLDPNLRNGSLKDGTLNMEILVFKSKFPREVL 136
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIG DACILVE+AGLNPFGGLR +SIPKAGCPVVNLRQTLDDLTR GYSVC
Sbjct: 137 LCRVGDFYEAIGFDACILVEHAGLNPFGGLRSDSIPKAGCPVVNLRQTLDDLTRCGYSVC 196
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE+QGPTQAR+RKSRFISGHAHPGSPYVFGL +DHD++FP+PMPV+G+S SAKGYC+
Sbjct: 197 IVEEIQGPTQARARKSRFISGHAHPGSPYVFGLAEVDHDVEFPDPMPVVGISHSAKGYCL 256
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH SL+ N+SGTSRWGE+GEGGLLWG
Sbjct: 257 ISVLETMKTYSAEEGLTEEAIVTKLRICRYHHLYLHNSLKNNSSGTSRWGEFGEGGLLWG 316
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC + FEWF+G P+ ELL KV+E+YGL+ + FR+VTVS E RP+PLHLGTATQIG IP
Sbjct: 317 ECSGKSFEWFDGSPIQELLCKVREIYGLDEKTVFRDVTVSLEGRPQPLHLGTATQIGVIP 376
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP LL+++LPSNC GLP +Y+RDLLLNPP++E+A+ IQ C+LM +TCSIPEFTC
Sbjct: 377 TEGIPSLLRMVLPSNCGGLPSMYIRDLLLNPPSFEVAAAIQEACRLMGNITCSIPEFTCI 436
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE +E NHIEFCRIKNVLDEI+ M ++EL+ IL L+ P VATG K++ +
Sbjct: 437 SAAKLVKLLESKEVNHIEFCRIKNVLDEIMLMNRDAELSAILHELLVPASVATGFKVEAD 496
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
L+ C + S RI E+ISL ESDQ I S + IP EFF DMES+WKGRVKRIH E E A
Sbjct: 497 MLMNGCSIISQRIAEVISLGVESDQAITSLEYIPKEFFNDMESSWKGRVKRIHAEEEFAN 556
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
V+ AAEALS+AV EDF+PIISR+K+ + GG KGEI YA+EHEAVWFKGK+F P VWA+
Sbjct: 557 VDRAAEALSIAVIEDFMPIISRVKSVVSSNGGLKGEIGYAKEHEAVWFKGKRFIPNVWAN 616
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGE+QIKQLKPA+DSKGRKVGEEWF+T KVE AL RYHEA A+ KVLELLRGLSSEL
Sbjct: 617 TPGEQQIKQLKPAIDSKGRKVGEEWFTTSKVENALARYHEACDNARNKVLELLRGLSSEL 676
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELD-----GANCLKMNGLSP 650
Q KINILVF S LL+I KALF HVSE RRR W+ P + + D ++ + + GL P
Sbjct: 677 QDKINILVFCSTLLIIAKALFGHVSEARRRGWMLPTISPLSKDCVVEESSSAMDLVGLFP 736
Query: 651 YWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
YW D +G+A+ N V M SLF+LTGPNGGGKSS+LRS+CAA LLGICGLMVP+ SA IP+
Sbjct: 737 YWLDVNQGNAILNDVHMHSLFVLTGPNGGGKSSMLRSVCAAVLLGICGLMVPSTSAVIPH 796
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
FD+IMLHMK+YDSPADGKSSFQ+EMSEIR++V+ T+RSLVLIDEICRGTETAKGTCIAG
Sbjct: 797 FDSIMLHMKAYDSPADGKSSFQIEMSEIRALVSRATARSLVLIDEICRGTETAKGTCIAG 856
Query: 771 SIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
SIIE LDN+GCLGI+STHLHGIF LPL + N +KAMGTE +DG PTWKL+DGICRES
Sbjct: 857 SIIERLDNVGCLGIISTHLHGIFDLPLSLSNTDFKAMGTEVVDGCIHPTWKLIDGICRES 916
Query: 831 LAFETAKREGVPETIIQRAEDLYIACGVNCVMIA--AREQPP---PSIIG 875
LAF+TA+REG+P+ II RAE+LY++ N A A +PP PS+ G
Sbjct: 917 LAFQTARREGMPDLIITRAEELYLSMSTNNKQGASVAHNEPPNGSPSVNG 966
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 110/177 (62%), Gaps = 22/177 (12%)
Query: 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDG----ICRESLAFETAKREGV 841
S ++G+ P +KN E L G P K V+ +C++ L+ + + +
Sbjct: 961 SPSVNGLVEEPESLKNR------LEMLPGTFEPLRKEVESAVTTMCKKILS-DLYNKSSI 1013
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRI 901
PE + V CV + AREQPPPS +G S +YV++R D +LY+GQTDDL GR+
Sbjct: 1014 PELV-----------EVVCVAVGAREQPPPSTVGRSSIYVIIRSDNRLYVGQTDDLLGRL 1062
Query: 902 RAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTS 958
AHR KEGM+ A+ LY +VPGKS+ACQ+ETLLINQL S+GF L N ADGKHRNFG S
Sbjct: 1063 NAHRSKEGMRDATVLYVLVPGKSVACQLETLLINQLPSRGFKLINKADGKHRNFGIS 1119
>gi|162458576|ref|NP_001105898.1| DNA mismatch repair protein [Zea mays]
gi|61696671|gb|AAX53096.1| DNA mismatch repair protein [Zea mays]
Length = 1131
Score = 1306 bits (3380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/890 (69%), Positives = 734/890 (82%), Gaps = 15/890 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
MWW+E+++ CRKPS++ L RL YSN+LGLD NL+NGSLK+GTLN E+L FKSKFPREVL
Sbjct: 77 MWWKEKMERCRKPSSIQLTQRLVYSNILGLDPNLRNGSLKDGTLNMEILVFKSKFPREVL 136
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIG DACILVE+AGLNPFGGLR +SIPKAGCPVVNLRQTLDDLTR GYSVC
Sbjct: 137 LCRVGDFYEAIGFDACILVEHAGLNPFGGLRSDSIPKAGCPVVNLRQTLDDLTRCGYSVC 196
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE+QGPTQAR+RKSRFISGHAHPGSPYVFGL +DHD++FP+PMPV+G+S SAKGYC+
Sbjct: 197 IVEEIQGPTQARARKSRFISGHAHPGSPYVFGLAEVDHDVEFPDPMPVVGISHSAKGYCL 256
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH SL+ N+SGTSRWGE+GEGGLLWG
Sbjct: 257 ISVLETMKTYSAEEGLTEEAIVTKLRICRYHHLYLHNSLKNNSSGTSRWGEFGEGGLLWG 316
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC + FEWF+G P+ ELL KV+E+YGL+ + FR+VTVS E RP+PLHLGTATQIG IP
Sbjct: 317 ECSGKSFEWFDGSPIQELLCKVREIYGLDEKTVFRDVTVSLEGRPQPLHLGTATQIGVIP 376
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP LL+++LPSNC GLP +Y+RDLLLNPP++E+A+ IQ C+LM +TCSIPEFTC
Sbjct: 377 TEGIPSLLRMVLPSNCGGLPSMYIRDLLLNPPSFEVAAAIQEACRLMGNITCSIPEFTCI 436
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE + NHIEFCRIKNVLDEI+ M ++EL+ IL L+ P VATG K++ +
Sbjct: 437 SAAKLVKLLESKGVNHIEFCRIKNVLDEIMLMNRDAELSAILHELLVPASVATGFKVEAD 496
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
L+ C + S RI E+ISL ESDQ I S + IP EFF DMES+WKGRVKRIH E E A
Sbjct: 497 MLMNGCSIISQRIAEVISLGVESDQAITSLEYIPKEFFNDMESSWKGRVKRIHAEEEFAN 556
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
V+ AAEALS+AV EDF+PIISR+K+ + GG KGEI YA+EHEAVWFKGK+F P VWA+
Sbjct: 557 VDRAAEALSIAVIEDFMPIISRVKSVVSSNGGLKGEIGYAKEHEAVWFKGKRFIPNVWAN 616
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGE+QIKQLKPA+DSKGRKVGEEWF+T KVE AL RYHEA A+ KVLELLRGLSSEL
Sbjct: 617 TPGEQQIKQLKPAIDSKGRKVGEEWFTTSKVENALARYHEACDNARNKVLELLRGLSSEL 676
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELD-----GANCLKMNGLSP 650
Q KINILVF S LL+I KALF HVSE RRR W+ P + + D ++ + + GL P
Sbjct: 677 QDKINILVFCSTLLIIAKALFGHVSEARRRGWMLPTISPLSKDCVVEESSSAMDLVGLFP 736
Query: 651 YWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
YW D +G+A+ N V M SLF+LTGPNGGGKSS+LRS+CAA LLGICGLMVP+ SA IP+
Sbjct: 737 YWLDVNQGNAILNDVHMHSLFVLTGPNGGGKSSMLRSVCAAVLLGICGLMVPSTSAVIPH 796
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
FD+IMLHMK+YDSPADGKSSFQ+EMSEIR++V+ T+RSLVLIDEICRGTETAKGTCIAG
Sbjct: 797 FDSIMLHMKAYDSPADGKSSFQIEMSEIRALVSRATARSLVLIDEICRGTETAKGTCIAG 856
Query: 771 SIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
SIIE LDN+GCLGI+STHLHGIF LPL + N +KAMGTE +DG PTWKL+DGICRES
Sbjct: 857 SIIERLDNVGCLGIISTHLHGIFDLPLSLSNTDFKAMGTEVVDGCIHPTWKLIDGICRES 916
Query: 831 LAFETAKREGVPETIIQRAEDLYIACGVNCVMIA--AREQPP---PSIIG 875
LAF+TA+REG+P+ II RAE+LY++ N A A +PP PS+ G
Sbjct: 917 LAFQTARREGMPDLIITRAEELYLSMSTNNKQGASVAHNEPPNGSPSVNG 966
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 110/177 (62%), Gaps = 22/177 (12%)
Query: 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDG----ICRESLAFETAKREGV 841
S ++G+ P +KN E L G P K V+ +C++ L+ + + +
Sbjct: 961 SPSVNGLVEEPESLKNR------LEMLPGTFEPLRKEVESAVTTMCKKILS-DLYNKSSI 1013
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRI 901
PE + V CV + AREQPPPS +G S +YV++R D +LY+GQTDDL GR+
Sbjct: 1014 PELV-----------EVVCVAVGAREQPPPSTVGRSSIYVIIRSDNRLYVGQTDDLLGRL 1062
Query: 902 RAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTS 958
AHR KEGM+ A+ LY +VPGKS+ACQ+ETLLINQL S+GF L N ADGKHRNFG S
Sbjct: 1063 NAHRSKEGMRDATVLYVLVPGKSVACQLETLLINQLPSRGFKLINKADGKHRNFGIS 1119
>gi|116310318|emb|CAH67334.1| OSIGBa0157A06.3 [Oryza sativa Indica Group]
Length = 1133
Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/897 (68%), Positives = 740/897 (82%), Gaps = 11/897 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+E+++ CRKPS++ L RL YSN+LGLD L+NGSLK+G+LN EMLQFKSKFPREVL
Sbjct: 81 LWWKEKMERCRKPSSMQLTQRLVYSNILGLDPTLRNGSLKDGSLNTEMLQFKSKFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEA+G DACILVE+AGLNPFGGLR +SIPKAGCPV+NLRQTLDDLTR GYSVC
Sbjct: 141 LCRVGDFYEAVGFDACILVEHAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRCGYSVC 200
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE+QGPTQAR+RK RFISGHAHPGSPYVFGL +DHD++FP+PMPV+G+SRSAKGYC+
Sbjct: 201 IVEEIQGPTQARARKGRFISGHAHPGSPYVFGLAEVDHDVEFPDPMPVVGISRSAKGYCL 260
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH+SLR N+SGTSRWGE+GEGGLLWG
Sbjct: 261 ISVLETMKTYSAEEGLTEEAVVTKLRICRYHHLYLHSSLRNNSSGTSRWGEFGEGGLLWG 320
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC + FEWF+G+P+ ELL KV+E+YGLE + FRNV+VS E RP+PL+LGTATQIG IP
Sbjct: 321 ECSGKSFEWFDGNPIEELLCKVREIYGLEEKTVFRNVSVSLEGRPQPLYLGTATQIGVIP 380
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP LLK++LP N GLP LY+RDLLLNPP++++AS++Q C+LM +TCSIPEFTC
Sbjct: 381 TEGIPSLLKIVLPPNFGGLPSLYIRDLLLNPPSFDVASSVQEACRLMGSITCSIPEFTCI 440
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE +E NHIEFCRIKNVLDE+L M N+EL+ IL L+DP + TG K++ +
Sbjct: 441 PAAKLVKLLESKEVNHIEFCRIKNVLDEVLFMGSNAELSAILNKLLDPAAIVTGFKVEAD 500
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
LV EC S RI E+ISL GESDQ I S + IP EFF DMES+WKGRVKR+H E E +
Sbjct: 501 ILVNECSFISQRIAEVISLGGESDQAITSSEYIPKEFFNDMESSWKGRVKRVHAEEEFSN 560
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
V++AAEALS AV EDFLPIISR+K+ + G KGEI YA+EHE+VWFKG++F P VWA+
Sbjct: 561 VDIAAEALSTAVIEDFLPIISRVKSVMSSNGSSKGEISYAKEHESVWFKGRRFTPNVWAN 620
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGE QIKQLKPA+DSKGRKVGEEWF+T+KVE AL RYHEA AK KVLELLRGLSSEL
Sbjct: 621 TPGELQIKQLKPAIDSKGRKVGEEWFTTIKVENALTRYHEACDNAKRKVLELLRGLSSEL 680
Query: 596 QTKINILVFASMLLVIGKALFAHV-SEGRRRKWVFPALKDIELDG-----ANCLKMNGLS 649
Q KIN+LVF S +L+I KALF HV SEGRRR WV P + + D ++ ++++G
Sbjct: 681 QDKINVLVFCSTMLIITKALFGHVSSEGRRRGWVLPTISPLCKDNVTEEISSEMELSGTF 740
Query: 650 PYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 709
PYW D +G+A+ N V M SLF+LTGPNGGGKSS+LRS+CAA+LLGICGLMVPA SA IP
Sbjct: 741 PYWLDTNQGNAILNDVHMHSLFILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIP 800
Query: 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 769
+FD+IMLHMK+YDSPADGKSSFQ+EMSEIRS+V T+RSLVLIDEICRGTETAKGTCIA
Sbjct: 801 HFDSIMLHMKAYDSPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIA 860
Query: 770 GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 829
GSIIE LDN+GC+GI+STHLHGIF LPL + N ++AMGTE +D PTWKL+DGICRE
Sbjct: 861 GSIIERLDNVGCIGIISTHLHGIFDLPLSLHNTDFQAMGTEIIDRCIQPTWKLMDGICRE 920
Query: 830 SLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPD 886
SLAF+TA++EG+P+ II+RAE+LY+A N ++ SI ++ ++ +P+
Sbjct: 921 SLAFQTARKEGMPDLIIRRAEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEKPN 977
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 84/108 (77%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
V CV + AREQPPPS +G S +YV++R D KLYIGQTDDL GR+ AHR KEGMQ A+ LY
Sbjct: 1024 VVCVAVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQTDDLVGRLSAHRSKEGMQDATILY 1083
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETL 965
+VPGKSIACQ+ETLLINQL +GF L N ADGKHRNFG S P E +
Sbjct: 1084 ILVPGKSIACQLETLLINQLPLKGFKLINKADGKHRNFGISLVPGEAI 1131
>gi|168988197|gb|ACA35268.1| DNA mismatch repair protein [Cucumis sativus]
Length = 1227
Score = 1299 bits (3362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/913 (71%), Positives = 732/913 (80%), Gaps = 84/913 (9%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+E ++ C+KPS++ LV RL +SNLLGLD NLKNGSLKEGTLN E+LQFK+KFPREVL
Sbjct: 141 LWWKETVESCKKPSSVQLVKRLDFSNLLGLDTNLKNGSLKEGTLNCEILQFKAKFPREVL 200
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVN-------LRQTLDDLT 113
LCRVGDFYEAIGIDACILVEYAGLNPFGG R +SIPKAGCPVVN LRQTLDDLT
Sbjct: 201 LCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNTRTTSRNLRQTLDDLT 260
Query: 114 RNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSR 173
RNG+SVCIVEEVQGP QARSRK RFISGHAHPGSPYVFGLVG+DHDLDFPEPMPVIG+SR
Sbjct: 261 RNGFSVCIVEEVQGPIQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVIGISR 320
Query: 174 SAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTS-----GTSR 228
SA+GYC+ ++ETMKTYS EDGLTE+ALVTKLRT +YHHLFLHTSLR N+S GT R
Sbjct: 321 SARGYCMSLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSERLLIGTCR 380
Query: 229 WGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPL 288
WGE+GEGG LWGEC RHFEWF+G P+ L+ KVKELYGL++EVTFRNVT+S ENRP PL
Sbjct: 381 WGEFGEGGRLWGECNPRHFEWFDGKPLDNLISKVKELYGLDDEVTFRNVTISSENRPHPL 440
Query: 289 HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQA------ 342
LGTATQIGAIPTEGIPCLLKVLLPSNC+GLP LY+RDLLLNPPAYE ASTIQ
Sbjct: 441 TLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYMRDLLLNPPAYETASTIQGDSPYKS 500
Query: 343 ---------------------------------ICKLMSKVTCSIPEFTC-----LVKLL 364
IC+LMS VTC+IP+FTC LVKLL
Sbjct: 501 PFFSCFWIELKYNSCYPSMALENHMILFLDCLTICRLMSNVTCAIPDFTCFPPAKLVKLL 560
Query: 365 ELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLA 424
E REANHIEFCR+KNVLDEIL M+ N +LN IL+LLMDP VATGLKID++T V EC A
Sbjct: 561 ETREANHIEFCRMKNVLDEILQMHKNCKLNNILKLLMDPASVATGLKIDYDTFVNECEWA 620
Query: 425 SVRIGEMISL--DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEA 482
S R+ EMI L + ESDQKI SY IP+ FFEDME +WKGRVKRIHIE EVE AAEA
Sbjct: 621 SSRVDEMIFLGSESESDQKISSYPIIPNGFFEDMEFSWKGRVKRIHIEESCTEVERAAEA 680
Query: 483 LSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQI 542
LSLAVTEDF+PIISRI+AT APLGGPKGEILYAR+H++VWFKGK+F P+VWA +PGE +I
Sbjct: 681 LSLAVTEDFVPIISRIRATNAPLGGPKGEILYARDHQSVWFKGKRFAPSVWAGSPGEAEI 740
Query: 543 KQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINIL 602
KQLKPA+DSKG+KVGEEW Y EA KAKAKV++LLR LSSEL KIN+L
Sbjct: 741 KQLKPALDSKGKKVGEEW------------YQEANTKAKAKVVDLLRELSSELLAKINVL 788
Query: 603 VFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVH 662
+FASMLL+I KALFAH +K +E G +K+ GLSPYWFD EG+AV
Sbjct: 789 IFASMLLIIAKALFAH------------GIKSLE--GKVAMKLVGLSPYWFDVVEGNAVQ 834
Query: 663 NTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
NT++M+SLFLLTGPNGGGKSSLLRSICAA+LLGICG MVPAESA IP+FD+IMLHMKS+D
Sbjct: 835 NTIEMESLFLLTGPNGGGKSSLLRSICAATLLGICGFMVPAESALIPHFDSIMLHMKSFD 894
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL 782
SPADGKSSFQVEMSE+RSIV T RSLVLIDEICRGTETAKGTCIAGSIIE LD GCL
Sbjct: 895 SPADGKSSFQVEMSEMRSIVNRVTERSLVLIDEICRGTETAKGTCIAGSIIEALDKAGCL 954
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
GIVSTHLHGIF LPL +N YKAMGT +G+TVPTWKL+ GICRESLAFETAK EG+
Sbjct: 955 GIVSTHLHGIFDLPLDTQNIVYKAMGTVSAEGRTVPTWKLISGICRESLAFETAKNEGIS 1014
Query: 843 ETIIQRAEDLYIA 855
E IIQRAEDLY++
Sbjct: 1015 EAIIQRAEDLYLS 1027
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 177/341 (51%), Gaps = 32/341 (9%)
Query: 646 NGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA-E 704
+G S + + +E ++ N V +SL L+ + R A I G ++ A +
Sbjct: 898 DGKSSFQVEMSEMRSIVNRVTERSLVLI--------DEICRGTETAKGTCIAGSIIEALD 949
Query: 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT---E 761
A + LH +D P D ++ M + + T + LI ICR + E
Sbjct: 950 KAGCLGIVSTHLH-GIFDLPLDTQNIVYKAMGTVSA--EGRTVPTWKLISGICRESLAFE 1006
Query: 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWK 821
TAK I+ +II+ +++ + G + L +++ ++ + +
Sbjct: 1007 TAKNEGISEAIIQRAEDLYLSNYAKEGISGKETTDLNFFVSSHPSLNGNGTGKSNLKSNG 1066
Query: 822 LVDGICRESLAFETAKREGVPETIIQRA---------------EDLYIACGVNCVMIAAR 866
++ + + ET + GV ++RA ++ + CV+I AR
Sbjct: 1067 VI--VKADQPKTETTSKTGVLWKKLERAITKICQKKLIEFHRDKNTLTPAEIQCVLIDAR 1124
Query: 867 EQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIA 926
E+PPPS IGAS VYV+LRPD K Y+GQTDDLDGR+++HR KEGM+ A+FLY +VPGKS+A
Sbjct: 1125 EKPPPSTIGASSVYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLA 1184
Query: 927 CQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETLTV 967
CQ+ETLLIN+L GF L N+ADGKHRNFGT++ + +TV
Sbjct: 1185 CQLETLLINRLPDHGFQLTNVADGKHRNFGTANLLSDNVTV 1225
>gi|32489513|emb|CAE04716.1| OSJNBa0043L24.4 [Oryza sativa Japonica Group]
Length = 1037
Score = 1285 bits (3326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/881 (68%), Positives = 726/881 (82%), Gaps = 10/881 (1%)
Query: 16 LHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA 75
+ L RL YSN+LGLD L+NGSLK+G+LN EMLQFKSKFPREVLLCRVGDFYEA+G DA
Sbjct: 1 MQLTQRLVYSNILGLDPTLRNGSLKDGSLNTEMLQFKSKFPREVLLCRVGDFYEAVGFDA 60
Query: 76 CILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
CILVE+AGLNPFGGLR +SIPKAGCPV+NLRQTLDDLTR GYSVCIVEE+QGPTQAR+RK
Sbjct: 61 CILVEHAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRCGYSVCIVEEIQGPTQARARK 120
Query: 136 SRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDG 195
RFISGHAHPGSPYVFGL +DHD++FP+PMPV+G+SRSAKGYC+IS+LETMKTYS E+G
Sbjct: 121 GRFISGHAHPGSPYVFGLAEVDHDVEFPDPMPVVGISRSAKGYCLISVLETMKTYSAEEG 180
Query: 196 LTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPV 255
LTE+A+VTKLR RYHHL+LH+SLR N+SGTSRWGE+GEGGLLWGEC + FEWF+G+P+
Sbjct: 181 LTEEAVVTKLRICRYHHLYLHSSLRNNSSGTSRWGEFGEGGLLWGECSGKSFEWFDGNPI 240
Query: 256 IELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSN 315
ELL KV+E+YGLE + FRNV+VS E RP+PL+LGTATQIG IPTEGIP LLK++LP N
Sbjct: 241 EELLCKVREIYGLEEKTVFRNVSVSLEGRPQPLYLGTATQIGVIPTEGIPSLLKIVLPPN 300
Query: 316 CSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-----LVKLLELREAN 370
GLP LY+RDLLLNPP++++AS++Q C+LM +TCSIPEFTC LVKLLE +E N
Sbjct: 301 FGGLPSLYIRDLLLNPPSFDVASSVQEACRLMGSITCSIPEFTCIPAAKLVKLLESKEVN 360
Query: 371 HIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGE 430
HIEFCRIKNVLDE+L M N+EL+ IL L+DP + TG K++ + LV EC S RI E
Sbjct: 361 HIEFCRIKNVLDEVLFMGSNAELSAILNKLLDPAAIVTGFKVEADILVNECSFISQRIAE 420
Query: 431 MISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTED 490
+ISL GESDQ I S + IP EFF DMES+WKGRVKR+H E E + V++AAEALS AV ED
Sbjct: 421 VISLGGESDQAITSSEYIPKEFFNDMESSWKGRVKRVHAEEEFSNVDIAAEALSTAVIED 480
Query: 491 FLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVD 550
FLPIISR+K+ + G KGEI YA+EHE+VWFKG++F P VWA+TPGE QIKQLKPA+D
Sbjct: 481 FLPIISRVKSVMSSNGSSKGEISYAKEHESVWFKGRRFTPNVWANTPGELQIKQLKPAID 540
Query: 551 SKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLV 610
SKGRKVGEEWF+T+KVE AL RYHEA AK KVLELLRGLSSELQ KIN+LVF S +L+
Sbjct: 541 SKGRKVGEEWFTTIKVENALTRYHEACDNAKRKVLELLRGLSSELQDKINVLVFCSTMLI 600
Query: 611 IGKALFAHVSEGRRRKWVFPALKDIELDG-----ANCLKMNGLSPYWFDAAEGSAVHNTV 665
I KALF HVSEGRRR WV P + + D ++ ++++G PYW D +G+A+ N V
Sbjct: 601 ITKALFGHVSEGRRRGWVLPTISPLCKDNVTEEISSEMELSGTFPYWLDTNQGNAILNDV 660
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
M SLF+LTGPNGGGKSS+LRS+CAA+LLGICGLMVPA SA IP+FD+IMLHMK+YDSPA
Sbjct: 661 HMHSLFILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIPHFDSIMLHMKAYDSPA 720
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 785
DGKSSFQ+EMSEIRS+V T+RSLVLIDEICRGTETAKGTCIAGSIIE LDN+GC+GI+
Sbjct: 721 DGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERLDNVGCIGII 780
Query: 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
STHLHGIF LPL + N +KAMGTE +D PTWKL+DGICRESLAF+TA++EG+P+ I
Sbjct: 781 STHLHGIFDLPLSLHNTDFKAMGTEIIDRCIQPTWKLMDGICRESLAFQTARKEGMPDLI 840
Query: 846 IQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPD 886
I+RAE+LY+A N ++ SI ++ ++ +P+
Sbjct: 841 IRRAEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEKPN 881
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 84/108 (77%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
V CV + AREQPPPS +G S +YV++R D KLYIGQTDDL GR+ AHR KEGMQ A+ LY
Sbjct: 928 VVCVAVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQTDDLVGRLSAHRSKEGMQDATILY 987
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETL 965
+VPGKSIACQ+ETLLINQL +GF L N ADGKHRNFG S P E +
Sbjct: 988 ILVPGKSIACQLETLLINQLPLKGFKLINKADGKHRNFGISLVPGEAI 1035
>gi|326530690|dbj|BAK01143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 821
Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/743 (70%), Positives = 622/743 (83%), Gaps = 10/743 (1%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
MWW+ER++ CRKPS++ L RL YSN+LGLD L+NGSLK+GTLN EMLQFKSKFPRE+L
Sbjct: 76 MWWKERMESCRKPSSVQLTQRLVYSNILGLDSTLRNGSLKDGTLNMEMLQFKSKFPREIL 135
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEA+G DACILVE+AGLNPFGGLR +SIPKAGCP++NLRQTLDDLTR GYSVC
Sbjct: 136 LCRVGDFYEAVGFDACILVEHAGLNPFGGLRSDSIPKAGCPIMNLRQTLDDLTRCGYSVC 195
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE+QGPTQAR+RK RFISGHAHPGSPYVFGL +DHDL+FP+PMPV+G+SRSAKGYC+
Sbjct: 196 IVEEIQGPTQARARKGRFISGHAHPGSPYVFGLAEVDHDLEFPDPMPVVGISRSAKGYCL 255
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH+SLR N+SGTSRWGE+GEGGLLWG
Sbjct: 256 ISVLETMKTYSAEEGLTEEAVVTKLRICRYHHLYLHSSLRNNSSGTSRWGEFGEGGLLWG 315
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC + F+WF+G P+ ELL KV+E+YGL+ + +FRNVT+S E RP+PL+LGTATQIG I
Sbjct: 316 ECNGKSFDWFDGSPIDELLCKVREIYGLDEKTSFRNVTISLEGRPQPLYLGTATQIGVIS 375
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP L K+LLP NC+GLP +Y+RDLLLNPP++++AS IQ C+LM +TCSIPEFTC
Sbjct: 376 TEGIPSLPKMLLPPNCAGLPSMYIRDLLLNPPSFDVASAIQEACRLMCSITCSIPEFTCI 435
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE +E NHIEFCRIKNVLDEI+ M G +EL+ I L++P V TGLK+D +
Sbjct: 436 PSAKLVKLLESKEVNHIEFCRIKNVLDEIMLMNGITELSAIQNKLLEPASVVTGLKVDAD 495
Query: 416 TLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAE 475
L++ECR S RIGE+ISL GESDQ I S + IP EFF DMES+WKGRVKR+H E E +
Sbjct: 496 ILIKECRFISKRIGEVISLAGESDQAISSSEYIPKEFFNDMESSWKGRVKRVHAEEEFSN 555
Query: 476 VEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
V++AA+ALS AVTEDFLPII R+K+ + G KGEI YA+EH AVWFKG++F P VWA+
Sbjct: 556 VDVAAQALSTAVTEDFLPIIVRVKSVMSSHGSSKGEIFYAKEHGAVWFKGRRFTPNVWAN 615
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
TPGEEQIKQLKPA+DSKGR+VGEEWF+T KVE AL RYHEA AK KVLELLRGLSSEL
Sbjct: 616 TPGEEQIKQLKPAIDSKGRRVGEEWFTTTKVENALARYHEACDNAKGKVLELLRGLSSEL 675
Query: 596 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELD-----GANCLKMNGLSP 650
Q KINILVF S LL+I KALF HVSEG RR WV PA+ + D ++ + + GL P
Sbjct: 676 QDKINILVFCSTLLIITKALFGHVSEGLRRGWVLPAIYPLSKDYNTEESSSEMDLLGLFP 735
Query: 651 YWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
YW D +G+A+ N V M+SLF+LTGPNGGGKSS+LRS+CAA+LLG+CGLMVPA SA IP+
Sbjct: 736 YWLDTNQGNAILNDVSMRSLFILTGPNGGGKSSMLRSVCAAALLGVCGLMVPAASAVIPH 795
Query: 711 FDAIMLHMKSYDSPADGKSSFQV 733
FD+IMLHMK+YDSPADGKSSFQV
Sbjct: 796 FDSIMLHMKAYDSPADGKSSFQV 818
>gi|302762645|ref|XP_002964744.1| hypothetical protein SELMODRAFT_230470 [Selaginella moellendorffii]
gi|300166977|gb|EFJ33582.1| hypothetical protein SELMODRAFT_230470 [Selaginella moellendorffii]
Length = 1032
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1017 (51%), Positives = 702/1017 (69%), Gaps = 60/1017 (5%)
Query: 2 WWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLL 61
WWQER+ +C+KP+T ++ L +NLLGLD NL++GSL++G+LN E+L K KFPREVLL
Sbjct: 20 WWQERMNLCQKPTTKEMIKLLIPTNLLGLDPNLRHGSLRDGSLNAELLDAKRKFPREVLL 79
Query: 62 CRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCI 121
CR+G+FYEA G DACILVE+AGLNP GG+R + P+AGCPV NLRQTLD++T+ G SVC+
Sbjct: 80 CRIGEFYEACGFDACILVEFAGLNPMGGIRVNASPRAGCPVANLRQTLDNITQQGLSVCV 139
Query: 122 VEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCII 181
+EEVQG ++ RK RFI+GHAHPGSPY++GL D D +FPEP PV+G+S+S +GY +
Sbjct: 140 MEEVQGAAPSKYRKDRFIAGHAHPGSPYIYGLAAADSDFEFPEPCPVVGISQSVRGYTFV 199
Query: 182 SILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGE 241
S+LE M+TY++EDGLTE+ALVTKLR+ +Y LFLH SLR N+SG+ +WG G+G LLW E
Sbjct: 200 SVLEMMRTYTVEDGLTEEALVTKLRSVQYQQLFLHRSLRGNSSGSVKWGSSGDGALLWAE 259
Query: 242 CIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPT 301
C + EWF+ DPV LL KVKE+Y +E++ FR + RPRP++LGTA+Q G +P
Sbjct: 260 CKGKDVEWFDRDPVSFLLDKVKEMYDIEDQAEFREIARPSLKRPRPVYLGTASQAGILPV 319
Query: 302 EGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-- 359
IP LLKVL+PS+ + L + Y+RDLLLNPP Y A+ IQ KLM+ V CSIPEF C
Sbjct: 320 PEIPSLLKVLVPSDTTSLCVRYLRDLLLNPPPYATAAAIQECLKLMTSVKCSIPEFLCVS 379
Query: 360 ---LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFET 416
LVKL+ RE NH+EF RIK++ +++L+M+ N+ L +I LL++PT +A+GL+++ E
Sbjct: 380 AAKLVKLIGAREVNHLEFSRIKHLAEDVLYMHENNSLRDIFHLLLEPTILASGLQLEAEQ 439
Query: 417 LVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEV 476
LV +C+ RI +IS G+ +Q I SY+++P +FF D ES+WKGRV+R H E A+V
Sbjct: 440 LVTDCKQLVDRISSVISCTGDPEQLINSYEHVPDDFFIDFESSWKGRVQRKHSEDFYADV 499
Query: 477 EMAAEALSLAVTEDFLPIISRIKA-TTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
+ A L+LA+ DFLP+++R K+ + G GEI Y +H+AVWFKGK F P +W S
Sbjct: 500 DKKAAELNLAIVGDFLPVLARAKSLVRSCYGNGNGEICYVPDHQAVWFKGKGFMPLLWGS 559
Query: 536 -TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSE 594
TPGEE+IK+L PA+DSKG+KVG++W +T +VE A+ Y EA KA V++ LR LS +
Sbjct: 560 ETPGEEEIKRLIPALDSKGKKVGDDWHTTGRVESAVMSYREAATKANFAVVKALRCLSDD 619
Query: 595 LQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD 654
++T +N ++F SM VI KA FAH SEG+RRKWVFP L + L +GL PYW D
Sbjct: 620 VRTYLNTIIFISMFCVIAKAFFAHASEGKRRKWVFPVLGGEQ----EPLVFSGLLPYWLD 675
Query: 655 AAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
+ + A+ N+ +M S+FLLTGPNGGGKSSLLRS+CAA+LLG+CGLMVPA A IP D+I
Sbjct: 676 STQDFAIPNSFEMSSIFLLTGPNGGGKSSLLRSVCAATLLGLCGLMVPASKAVIPQLDSI 735
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
ML + S DSP++GKS FQ+EM+E+++++ TT RSLVL+DE+C+GT+ KGTCI S++E
Sbjct: 736 MLRVVSQDSPSEGKSLFQMEMAELKTLLLETTRRSLVLVDELCKGTDVQKGTCILASVLE 795
Query: 775 TLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT-EYLDGQTVPTWKLVDGICRESLAF 833
D +GCLGIVSTHLHG+ + L N KAMGT + L G PTW+L+DG CRESLAF
Sbjct: 796 NFDRLGCLGIVSTHLHGLLDMKLDTNNVVLKAMGTRKVLQGGLQPTWELIDGECRESLAF 855
Query: 834 ETAKREGVPETIIQRAEDLY---------------------------------------- 853
ETAK EGV E I+ RA++LY
Sbjct: 856 ETAKGEGVTEEILDRAKELYEEMQKKHLSQSKPMVDGNEVRHESARNLKDLEQEVLRICK 915
Query: 854 ------IACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGK 907
C + AR+QPPP SCVY++ RPD K Y+GQTD+L GRI +HR
Sbjct: 916 DQLNGTFVLSSTCYFVGARQQPPPFTSNHSCVYILQRPDGKFYVGQTDNLSGRIASHRTS 975
Query: 908 EGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVET 964
G++ A FLY V KS+ACQ+ET LI QL QG L N D +H++FG S PVE
Sbjct: 976 MGLKQAPFLYLPVSNKSVACQLETALITQLTQQGLNLVNKVDQRHKHFGIS--PVEA 1030
>gi|242076404|ref|XP_002448138.1| hypothetical protein SORBIDRAFT_06g021950 [Sorghum bicolor]
gi|241939321|gb|EES12466.1| hypothetical protein SORBIDRAFT_06g021950 [Sorghum bicolor]
Length = 1059
Score = 1086 bits (2809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/868 (62%), Positives = 653/868 (75%), Gaps = 80/868 (9%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
MWW+E+++ CRKPS++ L RL YSN+LGLD NL+NGSLK+GTLN E+L FKSKFPREVL
Sbjct: 77 MWWKEKMEKCRKPSSVQLTQRLVYSNILGLDPNLRNGSLKDGTLNMEILLFKSKFPREVL 136
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEAIG DACILVE+AGLNPFGGLR +SIPKAGCPVVNLRQTLDDLTR GYSVC
Sbjct: 137 LCRVGDFYEAIGFDACILVEHAGLNPFGGLRSDSIPKAGCPVVNLRQTLDDLTRCGYSVC 196
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEE+QGPTQARSRKSRFISGHAHPGSPYVFGL +DHD++FP+PMPV+G+S SAKGYC+
Sbjct: 197 IVEEIQGPTQARSRKSRFISGHAHPGSPYVFGLAEVDHDVEFPDPMPVVGISHSAKGYCL 256
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH SL+ N+SGTSRWGE+GEGGLLWG
Sbjct: 257 ISVLETMKTYSAEEGLTEEAIVTKLRICRYHHLYLHNSLKNNSSGTSRWGEFGEGGLLWG 316
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC + FEWF+G P+ ELL KV+E+YGL+ + FRNVTVS E RP+PL+LGTATQIG IP
Sbjct: 317 ECSGKSFEWFDGLPIEELLCKVREIYGLDEKTVFRNVTVSLEGRPQPLYLGTATQIGVIP 376
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIP LLK+ LPS+C GLP +Y+RDLLLNPP++++A+ +Q C+LM +TCS+PEFTC
Sbjct: 377 TEGIPSLLKMALPSSCGGLPSMYIRDLLLNPPSFDVAAAVQEACRLMGSITCSVPEFTCI 436
Query: 360 -LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLV 418
LVKLLE +E NHIEFCRIKNVLDEI+ M N+EL+ IL L+ P VATGLK++ + LV
Sbjct: 437 SLVKLLESKEVNHIEFCRIKNVLDEIMLMNRNAELSAILNKLLVPGSVATGLKVEADMLV 496
Query: 419 EECRLASV-RIGEMISLDGESDQKICSYDNIPSEFFEDMESTW-KGRVKRIHIEPEIAEV 476
E + + R+ ++S +G S +IC + ++ E+ W KG+
Sbjct: 497 IEDFMPIISRVKSVVSSNGGSKGEIC--------YAKEHEAVWFKGK------------- 535
Query: 477 EMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAST 536
F P + GE + A+ KG+K
Sbjct: 536 -------------RFTPTV---------WANTPGEQQIKQLKPAIDSKGRKV-------- 565
Query: 537 PGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQ 596
GEE WF+T KVE AL RYHEA A+ KV+ELLRGLSSELQ
Sbjct: 566 -GEE-------------------WFTTSKVENALARYHEACDNARNKVVELLRGLSSELQ 605
Query: 597 TKINILVFASMLLVIGKALFAHVSEGRRRKW----VFPALKD-IELDGANCLKMNGLSPY 651
KINILVF S LL+I KALF HVSE RRR W +FP KD + + +N + + GL PY
Sbjct: 606 DKINILVFCSTLLIIAKALFGHVSEARRRGWMLPTIFPLSKDCVAEESSNAMDLVGLFPY 665
Query: 652 WFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF 711
W D +G+A+ N V M SLF+LTGPNGGGKSS+LRS+CAA+LLGICGLMVP+ SA IP+F
Sbjct: 666 WLDVNQGNAILNDVHMHSLFVLTGPNGGGKSSMLRSVCAAALLGICGLMVPSTSAVIPHF 725
Query: 712 DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGS 771
D+IMLHMK+YDSPADGKSSFQ+EMSEIR++V+ T+RSLVLIDEICRGTETAKGTCIAGS
Sbjct: 726 DSIMLHMKAYDSPADGKSSFQIEMSEIRALVSRATARSLVLIDEICRGTETAKGTCIAGS 785
Query: 772 IIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
IIE LDN+GCLGI+STHLHGIF LPL + +KAMGTE +DG PTWKL+DGICRESL
Sbjct: 786 IIERLDNVGCLGIISTHLHGIFDLPLSLSTTDFKAMGTEVVDGCIHPTWKLMDGICRESL 845
Query: 832 AFETAKREGVPETIIQRAEDLYIACGVN 859
AF+TA+REG+PE II+RAE+LY+ N
Sbjct: 846 AFQTARREGMPEFIIRRAEELYLTMSTN 873
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 103/164 (62%), Gaps = 16/164 (9%)
Query: 799 IKNAAYKAMGTEYLDGQTVPTWKLVDG----ICRESLAFETAKREGVPETIIQRAEDLYI 854
++ Y E L G P + V+ IC++ L + + +PE +
Sbjct: 896 VEKPEYLKYRLEILPGTFEPLRREVESAVTMICKKKL-LDLYNKSSIPELV--------- 945
Query: 855 ACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSAS 914
V CV + AREQPPPS +G S +YV++R D KLY+GQTDDL GR+ AHR KEGMQ A+
Sbjct: 946 --EVVCVAVGAREQPPPSTVGRSSIYVIIRSDNKLYVGQTDDLLGRLHAHRSKEGMQDAT 1003
Query: 915 FLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTS 958
LY +VPGKS+ACQ+ETLLINQL S+GF L N ADGKHRNFG S
Sbjct: 1004 ILYILVPGKSVACQLETLLINQLPSRGFKLINKADGKHRNFGIS 1047
>gi|218195172|gb|EEC77599.1| hypothetical protein OsI_16565 [Oryza sativa Indica Group]
Length = 1017
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/887 (60%), Positives = 655/887 (73%), Gaps = 94/887 (10%)
Query: 35 KNGSLKEGTLN--------WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNP 86
+NG ++E +N ++ + S F + +VGDFYEA+G DACILVE+AGLNP
Sbjct: 34 ENGEVQETIINAIDSETCVFKYFRIGSNFKK----WKVGDFYEAVGFDACILVEHAGLNP 89
Query: 87 FGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC-----------------IVEEVQGPT 129
FGGLR +SIPKAGCPV+NLRQTLDDLTR GYSVC IVEE+QGPT
Sbjct: 90 FGGLRSDSIPKAGCPVMNLRQTLDDLTRCGYSVCPHAEQLIGPDISLWRECIVEEIQGPT 149
Query: 130 QARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKT 189
QAR+RK RFISGHAHPGSPYVFGL +DHD++FP+PMPV+G+SRSAKGYC+IS+LETMKT
Sbjct: 150 QARARKGRFISGHAHPGSPYVFGLAEVDHDVEFPDPMPVVGISRSAKGYCLISVLETMKT 209
Query: 190 YSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW 249
YS E+GLTE+A+VTKLR RYHHL+LH+SLR N+SGTSRWGE+GEGGLLWGEC + FEW
Sbjct: 210 YSAEEGLTEEAVVTKLRICRYHHLYLHSSLRNNSSGTSRWGEFGEGGLLWGECSGKSFEW 269
Query: 250 FEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLK 309
F+G+P+ ELL KV+E+YGLE + FRNV+VS E RP+PL+LGTATQIG IPTEGIP LLK
Sbjct: 270 FDGNPIEELLCKVREIYGLEEKTVFRNVSVSLEGRPQPLYLGTATQIGVIPTEGIPSLLK 329
Query: 310 VLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-----LVKLL 364
++LP N GLP LY+RDLLLNPP++++AS++Q C+LM +TCSIPEFTC LVKLL
Sbjct: 330 IVLPPNFGGLPSLYIRDLLLNPPSFDVASSVQEACRLMGSITCSIPEFTCIPAAKLVKLL 389
Query: 365 ELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLA 424
E +E NHIEFCRIKNVLDE+L M N+EL+ IL L+DP + TG K++ + LV EC
Sbjct: 390 ESKEVNHIEFCRIKNVLDEVLFMGSNAELSAILNKLLDPAAIVTGFKVEADILVNECSFI 449
Query: 425 SVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALS 484
S RI E+ISL GESDQ I S + IP EFF DMES+WKGRVKR+H E E + V++AAEALS
Sbjct: 450 SQRIAEVISLGGESDQAITSSEYIPKEFFNDMESSWKGRVKRVHAEEEFSNVDIAAEALS 509
Query: 485 LAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ 544
A+ K+ +P
Sbjct: 510 TAI--------------------------------------KQLKP-------------- 517
Query: 545 LKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVF 604
A+DSKGRKVGEEWF+T+KVE AL RYHEA AK KVLELLRGLSSELQ KIN+LVF
Sbjct: 518 ---AIDSKGRKVGEEWFTTIKVENALTRYHEACDNAKRKVLELLRGLSSELQDKINVLVF 574
Query: 605 ASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDG-----ANCLKMNGLSPYWFDAAEGS 659
S +L+I KALF HVSEGRRR WV P + + D ++ ++++G PYW D +G+
Sbjct: 575 CSTMLIITKALFGHVSEGRRRGWVLPTISPLCKDNVTEEISSEMELSGTFPYWLDTNQGN 634
Query: 660 AVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
A+ N V M SLF+LTGPNGGGKSS+LRS+CAA+LLGICGLMVPA SA IP+FD+IMLHMK
Sbjct: 635 AILNDVHMHSLFILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIPHFDSIMLHMK 694
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+YDSPADGKSSFQ+EMSEIRS+V T+RSLVLIDEICRGTETAKGTCIAGSIIE LDN+
Sbjct: 695 AYDSPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERLDNV 754
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
GC+GI+STHLHGIF LPL + N +KAMGTE +D PTWKL+DGICRESLAF+TA++E
Sbjct: 755 GCIGIISTHLHGIFDLPLSLHNTDFKAMGTEIIDRCIQPTWKLMDGICRESLAFQTARKE 814
Query: 840 GVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPD 886
G+P+ II+RAE+LY+A N ++ SI ++ ++ +P+
Sbjct: 815 GMPDLIIRRAEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEKPN 861
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 84/108 (77%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
V CV + AREQPPPS +G S +YV++R D KLYIGQTDDL GR+ AHR KEGMQ A+ LY
Sbjct: 908 VVCVAVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQTDDLVGRLSAHRSKEGMQDATILY 967
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETL 965
+VPGKSIACQ+ETLLINQL +GF L N ADGKHRNFG S P E +
Sbjct: 968 ILVPGKSIACQLETLLINQLPLKGFKLINKADGKHRNFGISLVPGEAI 1015
>gi|302757481|ref|XP_002962164.1| hypothetical protein SELMODRAFT_77583 [Selaginella moellendorffii]
gi|300170823|gb|EFJ37424.1| hypothetical protein SELMODRAFT_77583 [Selaginella moellendorffii]
Length = 1001
Score = 1029 bits (2661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/1006 (50%), Positives = 681/1006 (67%), Gaps = 66/1006 (6%)
Query: 18 LVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACI 77
++ L +NLLGLD NL++GSL++G+LN E+L K KFPREVLLCR+G+FYEA G DACI
Sbjct: 1 MIKLLIPTNLLGLDPNLRHGSLRDGSLNAELLDAKRKFPREVLLCRIGEFYEACGFDACI 60
Query: 78 LVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 137
LVE+AGLNP GG+R + P+AGCP+ NLRQTLD++T+ G SVC++EEVQG ++ RK R
Sbjct: 61 LVEFAGLNPMGGIRANASPRAGCPIANLRQTLDNITQQGLSVCVMEEVQGAAPSKYRKDR 120
Query: 138 FISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLT 197
FI+GHAHPGSPY++GL + D +FPEP PV+G+S+S +GY +S+LE M+TY++EDGLT
Sbjct: 121 FIAGHAHPGSPYIYGLAAAESDFEFPEPCPVVGISQSVRGYTFVSVLEMMRTYTVEDGLT 180
Query: 198 EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIE 257
E+ALVTKLR+ +Y LFLH SLR N+SG+ RWG G+G LLW EC + EWF+ DPV
Sbjct: 181 EEALVTKLRSVQYQQLFLHRSLRGNSSGSVRWGSSGDGALLWAECKGKDVEWFDRDPVSF 240
Query: 258 LLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCS 317
LL KVKE+Y +E++ FR + RPRP++LGTA+Q G +P IP LLKVL+PS+ +
Sbjct: 241 LLDKVKEMYDIEDQAEFREIARPSLKRPRPVYLGTASQAGILPVPEIPSLLKVLVPSDTT 300
Query: 318 GLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHI 372
L + Y+RDLLLNPP Y A+ IQ KLM+ V CSIPEF C LVKL+ RE NH+
Sbjct: 301 SLCVRYLRDLLLNPPPYATAAAIQECLKLMTSVKCSIPEFLCVSAAKLVKLIGAREVNHL 360
Query: 373 EFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMI 432
EF RIK++ +++L+M+ N L +I LL++PT +A+GL+++ E LV +C+ RI +I
Sbjct: 361 EFSRIKHLAEDVLYMHENDSLRDIFHLLLEPTILASGLQLEAEQLVTDCKQLVDRISSVI 420
Query: 433 SLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFL 492
S G+ +Q I SY+++P +FF D ES+WKGRV+R E A+V+ A L+ A+ DFL
Sbjct: 421 SCTGDPEQLINSYEHVPDDFFIDFESSWKGRVQRKLSEDFYADVDRNAAELNSAIVGDFL 480
Query: 493 PIISRIKA-TTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS-TPGEEQIKQLKPAVD 550
P+++R K+ + G GEI Y +H+AVWFKGK F P +W S TPGEE+IK+L PA+D
Sbjct: 481 PVLARAKSLVRSCYGNGNGEICYVPDHQAVWFKGKGFMPLLWGSETPGEEEIKRLIPALD 540
Query: 551 SKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLV 610
SKG+KVG++W +T +VE A+ Y EA KA V++ LR LS +++T +N ++F SM V
Sbjct: 541 SKGKKVGDDWHTTGRVESAVMSYREAATKANFAVVKALRCLSDDVRTYLNTIIFISMFCV 600
Query: 611 IGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSL 670
I KA FAH SEG+RRKWVFP L G L +GL PYW D+ + A+ N+ +M S+
Sbjct: 601 IAKAFFAHASEGKRRKWVFPV-----LGGEQPLVFSGLLPYWLDSTQDFAIPNSFEMSSI 655
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
FLLTGPNGGGKSSLLRS+CAA+LLG+CGLMVPA A IP D+IML + S DSP++GKS
Sbjct: 656 FLLTGPNGGGKSSLLRSVCAATLLGLCGLMVPASKAVIPQLDSIMLRVVSQDSPSEGKSL 715
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790
FQ+EM+E+++++ TT RSLVL+DE+C+GT+ KGTCI S++E D +GCLGIVSTHLH
Sbjct: 716 FQMEMAELKTLLLETTRRSLVLVDELCKGTDVQKGTCILASVLENFDRLGCLGIVSTHLH 775
Query: 791 GIFSLPLKIKNAAYKAMGT-EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
G+ + L N KAMGT + L G PTW+L+DG CRESLAFETAK EGV E I+ RA
Sbjct: 776 GLLDMKLDTNNVVLKAMGTRKVLQGGLQPTWELIDGECRESLAFETAKGEGVTEEILDRA 835
Query: 850 EDLY-----------------------IACGVNCVMIAAREQPPPSI----------IGA 876
+LY N + EQ I + +
Sbjct: 836 RELYEEMQKKYLSQSKPMVDGNEVRHESTLDSNAAASSDLEQEVLRICKDQLNGTFVLSS 895
Query: 877 SCVYVMLR------------------PDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYF 918
+C +V R PD K Y+GQTD+L GRI +HR G++ A FLY
Sbjct: 896 TCYFVGARQQPPPFTSNHSCVYILHRPDGKFYVGQTDNLSGRIASHRTSMGLKQAPFLYL 955
Query: 919 VVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVET 964
V KS+ACQ+ET LI QL QG L N D +H++FG S PVE
Sbjct: 956 PVSNKSVACQLETALITQLTQQGLNLVNKVDQRHKHFGIS--PVEA 999
>gi|222629170|gb|EEE61302.1| hypothetical protein OsJ_15393 [Oryza sativa Japonica Group]
Length = 1227
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/724 (64%), Positives = 578/724 (79%), Gaps = 8/724 (1%)
Query: 170 GVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRW 229
G+SRSAKGYC+IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH+SLR N+SGTSRW
Sbjct: 349 GISRSAKGYCLISVLETMKTYSAEEGLTEEAVVTKLRICRYHHLYLHSSLRNNSSGTSRW 408
Query: 230 GEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLH 289
GE+GEGGLLWGEC + FEWF+G+P+ ELL KV+E+YGLE + FRNV+VS E RP+PL+
Sbjct: 409 GEFGEGGLLWGECSGKSFEWFDGNPIEELLCKVREIYGLEEKTVFRNVSVSLEGRPQPLY 468
Query: 290 LGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSK 349
LGTATQIG IPTEGIP LLK++LP N GLP LY+RDLLLNPP++++AS++Q + ++
Sbjct: 469 LGTATQIGVIPTEGIPSLLKIVLPPNFGGLPSLYIRDLLLNPPSFDVASSVQVVLGFLNS 528
Query: 350 V--TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVA 407
+ ++T LVKLLE +E NHIEFCRIKNVLDE+L M N+EL+ IL L+DP +
Sbjct: 529 FPKMFVVTQYT-LVKLLESKEVNHIEFCRIKNVLDEVLFMGSNAELSAILNKLLDPAAIV 587
Query: 408 TGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRI 467
TG K++ + LV EC S RI E+ISL GESDQ I S + IP EFF DMES+WKGRVKR+
Sbjct: 588 TGFKVEADILVNECSFISQRIAEVISLGGESDQAITSSEYIPKEFFNDMESSWKGRVKRV 647
Query: 468 HIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKK 527
H E E + V++AAEALS AV EDFLPIISR+K+ + G KGEI YA+EHE+VWFKG++
Sbjct: 648 HAEEEFSNVDIAAEALSTAVIEDFLPIISRVKSVMSSNGSSKGEISYAKEHESVWFKGRR 707
Query: 528 FRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLEL 587
F P VWA+TPGE QIKQLKPA+DSKGRKVGEEWF+T+KVE AL RYHEA AK KVLEL
Sbjct: 708 FTPNVWANTPGELQIKQLKPAIDSKGRKVGEEWFTTIKVENALTRYHEACDNAKRKVLEL 767
Query: 588 LRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDG-----ANC 642
LRGLSSELQ KIN+LVF S +L+I KALF HVSEGRRR WV P + + D ++
Sbjct: 768 LRGLSSELQDKINVLVFCSTMLIITKALFGHVSEGRRRGWVLPTISPLCKDNVTEEISSE 827
Query: 643 LKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP 702
++++G PYW D +G+A+ N V M SLF+LTGPNGGGKSS+LRS+CAA+LLGICGLMVP
Sbjct: 828 MELSGTFPYWLDTNQGNAILNDVHMHSLFILTGPNGGGKSSMLRSVCAAALLGICGLMVP 887
Query: 703 AESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTET 762
A SA IP+FD+IMLHMK+YDSPADGKSSFQ+EMSEIRS+V T+RSLVLIDEICRGTET
Sbjct: 888 AASAVIPHFDSIMLHMKAYDSPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTET 947
Query: 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKL 822
AKGTCIAGSIIE LDN+GC+GI+STHLHGIF LPL + N +KAMGTE +D PTWKL
Sbjct: 948 AKGTCIAGSIIERLDNVGCIGIISTHLHGIFDLPLSLHNTDFKAMGTEIIDRCIQPTWKL 1007
Query: 823 VDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVM 882
+DGICRESLAF+TA++EG+P+ II+RAE+LY+A N ++ SI ++ ++
Sbjct: 1008 MDGICRESLAFQTARKEGMPDLIIRRAEELYLAMSTNSKQTSSAVHHEISIANSTVNSLV 1067
Query: 883 LRPD 886
+P+
Sbjct: 1068 EKPN 1071
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/269 (73%), Positives = 231/269 (85%), Gaps = 17/269 (6%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+E+++ CRKPS++ L RL YSN+LGLD L+NGSLK+G+LN EMLQFKSKFPREVL
Sbjct: 81 LWWKEKMERCRKPSSMQLTQRLVYSNILGLDPTLRNGSLKDGSLNTEMLQFKSKFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVGDFYEA+G DACILVE+AGLNPFGGLR +SIPKAGCPV+NLRQTLDDLTR GYSVC
Sbjct: 141 LCRVGDFYEAVGFDACILVEHAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRCGYSVC 200
Query: 121 -----------------IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFP 163
IVEE+QGPTQAR+RK RFISGHAHPGSPYVFGL +DHD++FP
Sbjct: 201 PHAEQLIGPDISLWRECIVEEIQGPTQARARKGRFISGHAHPGSPYVFGLAEVDHDVEFP 260
Query: 164 EPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNT 223
+PMPV+G+SRSAKGYC+IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH+SLR N+
Sbjct: 261 DPMPVVGISRSAKGYCLISVLETMKTYSAEEGLTEEAVVTKLRICRYHHLYLHSSLRNNS 320
Query: 224 SGTSRWGEYGEGGLLWGECIARHFEWFEG 252
SGTSRWGE+GEGGLLWGEC + FEWF+G
Sbjct: 321 SGTSRWGEFGEGGLLWGECSGKSFEWFDG 349
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 84/108 (77%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
V CV + AREQPPPS +G S +YV++R D KLYIGQTDDL GR+ AHR KEGMQ A+ LY
Sbjct: 1118 VVCVAVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQTDDLVGRLSAHRSKEGMQDATILY 1177
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETL 965
+VPGKSIACQ+ETLLINQL +GF L N ADGKHRNFG S P E +
Sbjct: 1178 ILVPGKSIACQLETLLINQLPLKGFKLINKADGKHRNFGISLVPGEAI 1225
>gi|168050074|ref|XP_001777485.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671103|gb|EDQ57660.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 862
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/842 (50%), Positives = 584/842 (69%), Gaps = 17/842 (2%)
Query: 19 VNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACIL 78
+ RLK++N LGLD +L+ GSLK+GT + E+L+ K+ FPRE+ LCR D YEA+G+DAC+L
Sbjct: 1 MKRLKFTNPLGLDESLRGGSLKKGTKSAELLEMKASFPREIFLCRTADIYEAVGVDACLL 60
Query: 79 VEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSR-KSR 137
VEY G+ P G R +S+PKAGCPVVNLRQ +D+LT G+SVC+VEEVQG R R K R
Sbjct: 61 VEYVGVAPVG--RKDSVPKAGCPVVNLRQAIDELTEEGFSVCVVEEVQGAVTGRGRRKER 118
Query: 138 FISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLT 197
FI+GHAHPGSP+++GL + DL+FP+ + VIG+S S +GYC+I E M+T+++EDGLT
Sbjct: 119 FIAGHAHPGSPFIYGLAAQNIDLEFPDAVSVIGISHSERGYCLIFASEIMRTFAVEDGLT 178
Query: 198 EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIE 257
E+A + LR R H LF H+SL +S WG+ G LLW EC H+EW+E DP+ +
Sbjct: 179 EEATLALLRAHRCHKLFTHSSLHVQSSDNGSWGKRG---LLWNECQRLHYEWYENDPIDD 235
Query: 258 LLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCS 317
LL +V+++YGL+ FR + V RPRPL++GTA+QIG IPT G+P LL +LP +
Sbjct: 236 LLARVRDIYGLDGLAEFREILVPPGERPRPLYVGTASQIGIIPTTGVPSLLDAVLPKEAN 295
Query: 318 GLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHI 372
L + Y+R+LLL+PP Y +A +Q C +S +T S+P+FTC L +L+E +EANH+
Sbjct: 296 HLCVSYLRNLLLHPPPYRVAECMQGACAALSGITSSVPDFTCVSAAKLKRLVEAKEANHV 355
Query: 373 EFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMI 432
E RI+ + +++L+M NS L+ +L+ L++P W+ATGL+I + L+ +C++ S ++G+M+
Sbjct: 356 ELSRIRRLAEDVLYMSSNSLLSGVLDQLLEPAWLATGLRIGRKQLISDCKMLSGKLGQML 415
Query: 433 SLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFL 492
+ +G+ DQ IP +FF D+E W+GRVKR H E EV+ AA L A+ +DF
Sbjct: 416 ASEGDQDQTRSQGAGIPDDFFRDLEDGWRGRVKREHAEEVYREVDDAANELINAINDDFC 475
Query: 493 PIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSK 552
PI+SR++ + G K EI Y+ E +AVW +GK + A + + L PAVD+K
Sbjct: 476 PIVSRMEEDN--VKGLKVEICYSYEDQAVWLQGKNIKSLAGADSSLVVALNCLVPAVDAK 533
Query: 553 GRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIG 612
G+KVGEEW++T KVE +L +Y A KA ++LELLR +S +LQ KI +L+F S L +I
Sbjct: 534 GKKVGEEWWTTSKVESSLGKYRAAVDKANVRILELLRAISEDLQPKIEVLIFVSTLSIIA 593
Query: 613 KALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFL 672
K L HV+EG RR W P L E + + L PYW D A N VDM+S+FL
Sbjct: 594 KTLNLHVTEGSRRNWAVPTLSSTERQ----MVLADLVPYWNDLAHEKVQPNLVDMKSMFL 649
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
LTGPNGGGKSS+LRSICA +LL CGLMVPA AS+P DAI+L M S DSPADGKS+FQ
Sbjct: 650 LTGPNGGGKSSMLRSICAGALLATCGLMVPAREASVPRLDAIILRMMSTDSPADGKSAFQ 709
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792
+EM+E+R+I+ T++SLVL+DE+CRGT+ KG+ IA S+IETLD IGC+G++STHLH +
Sbjct: 710 MEMAELRTILEEATNKSLVLVDELCRGTDVGKGSFIAASVIETLDRIGCIGVLSTHLHDL 769
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ L+ N KAMGT + G+ PTWKLVDG CRESLAFE A++EGVP ++ RAE+L
Sbjct: 770 LDMELRTSNVVQKAMGTNEVGGRYYPTWKLVDGACRESLAFEVARKEGVPTGVVDRAEEL 829
Query: 853 YI 854
+
Sbjct: 830 CV 831
>gi|449527353|ref|XP_004170676.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH1,
mitochondrial-like, partial [Cucumis sativus]
Length = 675
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/673 (67%), Positives = 518/673 (76%), Gaps = 65/673 (9%)
Query: 360 LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVE 419
LVKLLE REANHIEFCR+KNVLDEIL M+ N +LN IL+LLMDP VATGLKID++T V
Sbjct: 1 LVKLLETREANHIEFCRMKNVLDEILQMHKNCKLNNILKLLMDPASVATGLKIDYDTFVN 60
Query: 420 ECRLASVRIGEMISL--DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVE 477
EC AS R+ EMI L + ESDQKI SY IP+ FFEDME +WKGRVKRIHIE EVE
Sbjct: 61 ECEWASSRVDEMIFLGSESESDQKISSYPIIPNGFFEDMEFSWKGRVKRIHIEESCTEVE 120
Query: 478 MAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTP 537
AAEALSLAVTEDF+PIISRI+AT APLGGPKGEILYAR+H++VWFKGK+F P+VWA +P
Sbjct: 121 RAAEALSLAVTEDFVPIISRIRATNAPLGGPKGEILYARDHQSVWFKGKRFAPSVWAGSP 180
Query: 538 GEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQT 597
GE +IKQLKPA+D KG+KVGEEWF+T KVE++L RY EA KAKAKV++LLR LSSEL
Sbjct: 181 GEAEIKQLKPALDXKGKKVGEEWFTTKKVEDSLTRYQEANTKAKAKVVDLLRELSSELLA 240
Query: 598 KINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL-------KDIE-LDGANCLKMNGLS 649
KIN+L+FASMLL+I KALFAHVSEGRRRKWVFP L K I+ L+G +K+ GLS
Sbjct: 241 KINVLIFASMLLIIAKALFAHVSEGRRRKWVFPTLAAPSDRSKGIKSLEGKVAMKLVGLS 300
Query: 650 PYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 709
PYWFD EG+AV NT++M+SLFLLTGPNGGGKSSLLRSICAA+LLGICG MVPAESA IP
Sbjct: 301 PYWFDVVEGNAVQNTIEMESLFLLTGPNGGGKSSLLRSICAATLLGICGFMVPAESALIP 360
Query: 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 769
+FD+IMLHMKS+DSPADGKSSFQVEMSE+RSIV T RSLVLIDEICRGTETAKGTCIA
Sbjct: 361 HFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIVNRVTERSLVLIDEICRGTETAKGTCIA 420
Query: 770 GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 829
GSIIE LD GCLGIVSTHLHGIF LPL +N YKAMGT +G+TVPTWKL+ GICRE
Sbjct: 421 GSIIEALDKAGCLGIVSTHLHGIFDLPLDTQNIVYKAMGTVSAEGRTVPTWKLISGICRE 480
Query: 830 SLAFETAKREGVPETIIQRAEDLYI---ACGVNCVMIAA--------------------- 865
SLAFETAK EG+ E IIQRAEDLY+ A N V++ A
Sbjct: 481 SLAFETAKNEGISEAIIQRAEDLYLSNYAKEANGVIVKADQPKTETTSKTGVLWKKLERA 540
Query: 866 -------------------------------REQPPPSIIGASCVYVMLRPDKKLYIGQT 894
RE+PPPS IGAS VYV+LRPD K Y+GQT
Sbjct: 541 ITKICQKKLIEFHRDKNTLTPAEIQCVLIDAREKPPPSTIGASSVYVILRPDGKFYVGQT 600
Query: 895 DDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRN 954
DDLDGR+++HR KEGM+ A+FLY +VPGKS+ACQ+ETLLIN+L GF L N+ADGKHRN
Sbjct: 601 DDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRN 660
Query: 955 FGTSSRPVETLTV 967
FGT++ + +TV
Sbjct: 661 FGTANLLSDNVTV 673
>gi|38567842|emb|CAE05685.2| OSJNBb0002J11.12 [Oryza sativa Japonica Group]
Length = 785
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/538 (64%), Positives = 423/538 (78%), Gaps = 6/538 (1%)
Query: 354 IPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKID 413
+ ++T LVKLLE +E NHIEFCRIKNVLDE+L M N+EL+ IL L+DP + TG K++
Sbjct: 93 VTQYT-LVKLLESKEVNHIEFCRIKNVLDEVLFMGSNAELSAILNKLLDPAAIVTGFKVE 151
Query: 414 FETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEI 473
+ LV EC S RI E+ISL GESDQ I S + IP EFF DMES+WKGRVKR+H E E
Sbjct: 152 ADILVNECSFISQRIAEVISLGGESDQAITSSEYIPKEFFNDMESSWKGRVKRVHAEEEF 211
Query: 474 AEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVW 533
+ V++AAEALS AV EDFLPIISR+K+ + G KGEI YA+EHE+VWFKG++F P VW
Sbjct: 212 SNVDIAAEALSTAVIEDFLPIISRVKSVMSSNGSSKGEISYAKEHESVWFKGRRFTPNVW 271
Query: 534 ASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSS 593
A+TPGE QIKQLKPA+DSKGRKVGEEWF+T+KVE AL RYHEA AK KVLELLRGLSS
Sbjct: 272 ANTPGELQIKQLKPAIDSKGRKVGEEWFTTIKVENALTRYHEACDNAKRKVLELLRGLSS 331
Query: 594 ELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDG-----ANCLKMNGL 648
ELQ KIN+LVF S +L+I KALF HVSEGRRR WV P + + D ++ ++++G
Sbjct: 332 ELQDKINVLVFCSTMLIITKALFGHVSEGRRRGWVLPTISPLCKDNVTEEISSEMELSGT 391
Query: 649 SPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
PYW D +G+A+ N V M SLF+LTGPNGGGKSS+LRS+CAA+LLGICGLMVPA SA I
Sbjct: 392 FPYWLDTNQGNAILNDVHMHSLFILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVI 451
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
P+FD+IMLHMK+YDSPADGKSSFQ+EMSEIRS+V T+RSLVLIDEICRGTETAKGTCI
Sbjct: 452 PHFDSIMLHMKAYDSPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCI 511
Query: 769 AGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
AGSIIE LDN+GC+GI+STHLHGIF LPL + N +KAMGTE +D PTWKL+DGICR
Sbjct: 512 AGSIIERLDNVGCIGIISTHLHGIFDLPLSLHNTDFKAMGTEIIDRCIQPTWKLMDGICR 571
Query: 829 ESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPD 886
ESLAF+TA++EG+P+ II+RAE+LY+A N ++ SI ++ ++ +P+
Sbjct: 572 ESLAFQTARKEGMPDLIIRRAEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEKPN 629
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 84/108 (77%)
Query: 858 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 917
V CV + AREQPPPS +G S +YV++R D KLYIGQTDDL GR+ AHR KEGMQ A+ LY
Sbjct: 676 VVCVAVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQTDDLVGRLSAHRSKEGMQDATILY 735
Query: 918 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETL 965
+VPGKSIACQ+ETLLINQL +GF L N ADGKHRNFG S P E +
Sbjct: 736 ILVPGKSIACQLETLLINQLPLKGFKLINKADGKHRNFGISLVPGEAI 783
>gi|168037330|ref|XP_001771157.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677537|gb|EDQ64006.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 720
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 279/535 (52%), Positives = 389/535 (72%), Gaps = 13/535 (2%)
Query: 2 WWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLL 61
WW+ +++ C KP T L+ +LKYSNLLGLD NL+NG+LK G +N E+L+ K +FP E+L+
Sbjct: 135 WWRLKVENCTKPVTRELMKKLKYSNLLGLDENLRNGNLKTGKMNAEILETKRQFPHEILM 194
Query: 62 CRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCI 121
R G+FYEA+G DAC+LVEYA LNP R +++P+AGCP++NLRQTLD LT G+SVCI
Sbjct: 195 YRCGEFYEAVGFDACMLVEYANLNPMAP-RSDTVPRAGCPIMNLRQTLDQLTYQGFSVCI 253
Query: 122 VEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCII 181
VEEVQGP K RF++GHAHPGSPYV+GLV D DL+FPEP+PV+G+SRS +GYC+I
Sbjct: 254 VEEVQGPQAKGHLKERFVAGHAHPGSPYVYGLVSADVDLEFPEPVPVMGISRSRRGYCLI 313
Query: 182 SILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGE 241
S+LE M ++S+ED LTE+A+V KLR+ + LF+H SLR++T+G ++W GEGGLL+GE
Sbjct: 314 SVLEMMHSFSVEDALTEEAVVAKLRSRQCQQLFMHRSLRRDTAGIAQW---GEGGLLYGE 370
Query: 242 CIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPT 301
C + EW++ DPV L+ KV+EL+ L+++ FR + V RPRPL++ TA+QIG +PT
Sbjct: 371 CQKKQQEWYDDDPVDGLISKVRELFDLDDDQEFREIVVPPGERPRPLYVSTASQIGILPT 430
Query: 302 EGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC-- 359
G+P LL VLLP + L YVR+LLL+PP + +A IQA C+ +++ T SIP+FTC
Sbjct: 431 AGVPSLLMVLLPPEANSLCTSYVRNLLLHPPPHRVADCIQAACRKLAETTSSIPDFTCVS 490
Query: 360 ---LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFET 416
L+KL+E EANHIEF R++NV ++IL M + +L+++L+LL+DPTW+ATG+ I+ +
Sbjct: 491 AAKLMKLIETHEANHIEFARMRNVAEDILLMANDPQLSDVLDLLLDPTWLATGIHIEQKQ 550
Query: 417 LVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEV 476
LV++C + RIG +++ D + DQ + S +NIP +FF D+E +W+GRVKR H E E EV
Sbjct: 551 LVDDCTFLTSRIGNVLASDSDIDQTVSSDENIPDDFFRDLEESWRGRVKRPHFEKEFVEV 610
Query: 477 EMAAEALSLAVTEDFLPIISRIKATTAPLGG----PKGEILYAREHEAVWFKGKK 527
AA L AV DFLPI++ +KA PLGG KGEI Y+R+ V K ++
Sbjct: 611 NEAATELIDAVFSDFLPIVNCVKAYQKPLGGGLGSRKGEICYSRDKLVVLKKEER 665
>gi|308802181|ref|XP_003078404.1| DNA mismatch repair MutS family (ISS) [Ostreococcus tauri]
gi|116056856|emb|CAL53145.1| DNA mismatch repair MutS family (ISS) [Ostreococcus tauri]
Length = 1077
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 365/1088 (33%), Positives = 535/1088 (49%), Gaps = 156/1088 (14%)
Query: 2 WWQE--RLQMCRKPSTLHLVNRLKYSNLLGLDVNLKN---------GSLKEGTLNWEMLQ 50
WW + KPST ++ RL ++ LG+D+ L+ GS K TL L
Sbjct: 13 WWTQIQNFNASAKPSTRGMIKRLDRNDPLGVDLGLRGASTRGVVREGSTKRLTLYDYALL 72
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLD 110
K PR+V L RVG+FYE +G DA +LV YAGLNP G +PKAGCP V +++TLD
Sbjct: 73 VKRAHPRKVSLIRVGEFYECLGYDAVMLVMYAGLNPMG---ISGVPKAGCPAVKIQETLD 129
Query: 111 DLTRNGYSVCIVEEVQGPT-----QARSRKSRFISGHAHPGSP-YVFGLVGIDHDLDFPE 164
LT G+S + EE PT Q K R+I+ P SP YV G + D+DF +
Sbjct: 130 RLTSRGFSCVVCEE--APTMNKYGQPPPPKDRYIAAIVTPASPNYVKGAASMGEDVDFGD 187
Query: 165 --PMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSR-----YHHLFL-- 215
PVIG++ SA GY ++ I ++ S+ +GLT +A KL + Y H L
Sbjct: 188 GGAPPVIGLASSALGYTVVQIEPDLRRVSVLEGLTAEAAAAKLSSGGIAPPLYRHESLGS 247
Query: 216 -HTSLRQNTSGTS------RWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGL 268
H +N +GTS RW E + + GD V +LL V+ +G+
Sbjct: 248 GHAQSGRNAAGTSAPSRRLRW----EVQSILSAAEGVDAVKYSGDVVDKLLDLVRLDHGI 303
Query: 269 ENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPIL---YVR 325
F V V RP PL L TA Q+G +PT +P LL LLP +P Y++
Sbjct: 304 SPNQMFTRVNVENNGRPAPLSLSTAQQLGILPTRSVPPLLTHLLPERS--VPAACRSYLQ 361
Query: 326 DLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCL-----VKLLELREANHIEFCRIKNV 380
+LLL+PP E A +IQ C L K T ++P+ L KLL REA+H F + ++
Sbjct: 362 ELLLHPPPPETAMSIQEACTLFMKTTSAMPQLEVLPPSKVAKLLSQREASHTFFADLASM 421
Query: 381 LDEI--LHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMIS---LD 435
+ L + + + +L++DPT + G K+ + L + C A+ I +IS L+
Sbjct: 422 ARGVSALLTHQDENMRRAGDLMIDPTSLKLGSKLTGDILAKSCIEATSMIEAVISDDVLN 481
Query: 436 G----------------------------ESDQKICSYDNIPSEF-FEDMESTWKGRVKR 466
G E + +NIP+ F FE+ W+GRV++
Sbjct: 482 GALILRDKIDDRDDDDGDSDDRDDSAFIMEGTDQPLKLENIPNRFTFEN--ERWRGRVRQ 539
Query: 467 IHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGK 526
HI + +VE A L V ED +P+I + A K E+ Y + ++W +
Sbjct: 540 EHISEALEKVEKTARKLEKVVKEDLIPVIEEVSAERKG-KAKKCELEYDMRNNSLWVR-- 596
Query: 527 KFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLE 586
+V ++ L D G++V + W ST +VE+AL+ Y A +A V +
Sbjct: 597 HIPKSV-------KRCDSLIHPRDRFGKEVADRW-STERVEDALDDYRVATQRAAKAVSD 648
Query: 587 LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMN 646
L L+ +LQ I+ LV A+ L + A+ AH S ++W P L E D A+ L +
Sbjct: 649 TLANLAEDLQEHISSLVGAATLSTVTTAILAHASNAINKRWSCPTLLP-EGDTASPLSVE 707
Query: 647 GLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA 706
GL P+W V NT D++ L LLTGPN GKS++LRS+ A +LL CGL VPA SA
Sbjct: 708 GLVPFWMRMDGAETVPNTFDLEGLVLLTGPNMAGKSTVLRSVAALALLAQCGLHVPAISA 767
Query: 707 SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGT 766
+P D++++ M S DSP +G SSF VEM EI+S++++ ++RSL+++DE+ RGTE + GT
Sbjct: 768 QVPRLDSLIVRMASTDSPVEGLSSFAVEMLEIKSMLSSCSARSLIMVDELGRGTEASHGT 827
Query: 767 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA-MGTEYL-DGQTVPTWKLVD 824
I G+++E LD G GI +THLHGI LPL++ +A M T + DG PTW+++
Sbjct: 828 AIGGAVVEALDECGARGIFATHLHGILDLPLRVSPYTQRARMETAHTEDGILRPTWRMIP 887
Query: 825 GICRESLAFETAKREGVPETIIQRA---------------------------EDLYIACG 857
G CRESLA +TA G+P +++ RA ED G
Sbjct: 888 GECRESLALQTALDCGIPRSVVARANVLLMEEAKLPLIGSSIVASTMSGLTNEDTNARNG 947
Query: 858 ----------------------VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTD 895
V+ + + E PP S G +CVY++ R D Y G++D
Sbjct: 948 GDVNALKSILADAATKAFQMDDVDVISVGPNEMPPLSSAGQTCVYILRRGDGWCYCGESD 1007
Query: 896 DLDGRIRAHRGKEGMQSASFLYFVVP----GKSIACQIETLLINQLYSQGFLLANIADGK 951
L R+ +HR + ++ +Y VP GKS A +E+ +I L L + D
Sbjct: 1008 HLPTRLTSHR-QSTVRLIELVYVAVPKEAGGKSAARSLESRVIQALNLARVPLWSDQDAS 1066
Query: 952 HRNFGTSS 959
H+NFG +S
Sbjct: 1067 HKNFGAAS 1074
>gi|145344514|ref|XP_001416776.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577002|gb|ABO95069.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1007
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 354/1033 (34%), Positives = 515/1033 (49%), Gaps = 119/1033 (11%)
Query: 18 LVNRLKYSNLLGLDVNLKNGSLKEG-----TLNWEMLQFKSKFPREVLLCRVGDFYEAIG 72
++ RL + LG+D+ L+ S + G TL K+ PR++ L RVGDFYE +G
Sbjct: 1 MIARLDRDDPLGVDLTLRGASTRHGAGKRMTLYDYARTVKAAHPRKISLIRVGDFYECLG 60
Query: 73 IDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--- 129
DA +LV +AGLNP G +PKAGCPVV +++TLD LT GYS + EEV
Sbjct: 61 YDAVMLVMHAGLNPMG---ISGVPKAGCPVVKIQETLDRLTSRGYSCVVCEEVPQMNRYG 117
Query: 130 QARSRKSRFISGHAHPGSP-YVFGLVGIDHDLDFPE--PMPVIGVSRSAKGYCIISILET 186
Q K R+I+ P SP YV G D+DF + PVIG++ SA GY ++++
Sbjct: 118 QPTPPKDRYIAAIVTPASPNYVKGAASQGEDVDFGDGSAPPVIGLASSALGYTVVTVEPD 177
Query: 187 MKTYSLEDGLTEDALVTKLRTSRYHH-LFLHTSLRQNTSGTSRWGEYGEGGLLWGECIAR 245
++ S+ +GLT +A KL L+ H SL SG ++ G + G +R
Sbjct: 178 LRRVSVLEGLTAEAAAAKLSAGGIAPPLYRHASL---GSGHAQSGRHAAGT----SAPSR 230
Query: 246 HFEW----------------FEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLH 289
W + GD V +LL V+ +GL E F VTV + RP PL
Sbjct: 231 RLRWEVQSILSAAEGVDAVKYNGDVVEKLLDLVRLDHGLGPEDAFHRVTVPNKGRPAPLS 290
Query: 290 LGTATQIGAIPTEGIPCLLKVLLPSNCSGLPIL-YVRDLLLNPPAYEIASTIQAICKLMS 348
L TA Q+G +P+ +P LL LLP + Y+++LLL+PP + A IQ L +
Sbjct: 291 LATAQQLGILPSRSVPPLLTHLLPERSAPAACRSYLQELLLHPPPPQTALAIQEASVLFT 350
Query: 349 KVTCSIPEFTCL-----VKLLELREANHIEFCRIKNVLDEILHMYGNS--ELNEILELLM 401
K T ++P+ L KLL REA+H F + ++ + + NS ++ LL+
Sbjct: 351 KSTSAMPQLEVLPPSKVAKLLAQREASHTFFADLASMARGVEALLTNSSADIRRAGHLLI 410
Query: 402 DPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWK 461
DPT + G K++ + L + C AS I ++S D I NIP+ F + E W+
Sbjct: 411 DPTSLKLGAKLNGDALAKVCSEASAMIENVVSED--VLNGIAVLLNIPNRFMFENER-WR 467
Query: 462 GRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAV 521
GRV+R HI I VE AA AL AV EDF+PII + A K E+ + + A+
Sbjct: 468 GRVRREHIPEAIDRVESAARALETAVNEDFMPIIEKAAAEKK-TKARKCELEHDMRNNAL 526
Query: 522 WFKGKKFRPTVWASTPGEE-QIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKA 580
W + P + ++ D G++V + W +T +VE AL+ Y A KA
Sbjct: 527 WMR----------HAPKDAMKMDDFIHPRDRFGKEVADRW-TTARVELALDDYRVATQKA 575
Query: 581 KAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGA 640
V + L L+ +LQ I+ LV A+ L + A+ AH S ++W P L E D A
Sbjct: 576 AVAVSDTLINLADDLQEHISSLVGAATLSTVTIAILAHASNAINKRWTPPTLLP-EGDTA 634
Query: 641 NCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLM 700
+ L + GL P+W V N+ D+ L LLTGPN GKS++LRS+ A +LL CGL
Sbjct: 635 SPLAVEGLVPFWMRLDGAETVPNSFDIDGLVLLTGPNMAGKSTVLRSVAALALLAQCGLH 694
Query: 701 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT 760
PA SA +P D++++ M S DSP +G SSF VEM EI+S++++ T+ SL+++DE+ RGT
Sbjct: 695 APAISAQVPRLDSLIVRMASTDSPVEGLSSFAVEMLEIKSMLSSCTAGSLIMVDELGRGT 754
Query: 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA-MGT-EYLDGQTVP 818
E + GT I G+++E LD G GI +THLHGI LPL++ +A M T + DG T P
Sbjct: 755 EASHGTAIGGAVVEALDECGARGIFATHLHGILDLPLRVSPWTRRARMETAKSDDGSTRP 814
Query: 819 TWKLVDGICRESLAFETAKREGVPETIIQRAEDL-------------------------- 852
TW++V G CRESLA +TA G+ I+ RA L
Sbjct: 815 TWRMVPGECRESLALQTALDCGISHAIVARANALLEEQTSIPLVKLSDSEQATLIEKQDT 874
Query: 853 ----------YIAC-------------GVNCVMIAAREQPPPSIIGASCVYVMLRPDKKL 889
Y+ + + + PP G +CVY++ R D
Sbjct: 875 SPERPRVDGEYLKLLLAESTARALQLENAQVIHVGPNQTPPIGSAGQTCVYILRRGDGWC 934
Query: 890 YIGQTDDLDGRIRAHRGKEGMQSASFLYFVVP----GKSIACQIETLLINQLYSQGFLLA 945
Y G++D L R+ HR + + +Y VP GKS A +E+ +I L L
Sbjct: 935 YCGESDHLPTRLATHR-QSSQRLIELVYVAVPKEAGGKSAARALESRVIQALQRARVPLW 993
Query: 946 NIADGKHRNFGTS 958
+ D H++FG +
Sbjct: 994 SDQDAAHKHFGAA 1006
>gi|255075045|ref|XP_002501197.1| mitochondrial-targeted muts 1 [Micromonas sp. RCC299]
gi|226516461|gb|ACO62455.1| mitochondrial-targeted muts 1 [Micromonas sp. RCC299]
Length = 1198
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 347/1092 (31%), Positives = 540/1092 (49%), Gaps = 157/1092 (14%)
Query: 12 KPSTLHLVNRLKYSNLLGLDVNLK---NGSLKEG---TLNWEMLQFKSKFPREVLLCRVG 65
K S +V R+ +S+ LG+D +L+ GS K G TL L+ K++ PR+VLL RVG
Sbjct: 120 KQSARLMVQRVDFSDPLGVDTSLRGASKGSGKSGGRKTLYDYALEVKAQHPRKVLLIRVG 179
Query: 66 DFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEV 125
+FYEAIG DA +LV +AGLNP G +P+AGCP+V +++TLD LT G+S + EEV
Sbjct: 180 EFYEAIGYDAVMLVMHAGLNPMG---LTGVPRAGCPLVKVQETLDRLTSRGFSAVVCEEV 236
Query: 126 QGPTQARSR---KSRFISGHAHPGSP-YVFGLV--GIDHDLDFPEPMPVIGVSRSAKGYC 179
+ +R K R+++ P SP YV G G D + D P PVIGV+ +A GY
Sbjct: 237 PVMHRYGTRAPPKERYVAAIITPASPQYVVGAADNGDDVEFDGAAPPPVIGVASTAVGYT 296
Query: 180 IISILETMKTYSLEDGLT-EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGE---- 234
+I++ ++ ++ +GLT E A L++H+S+ +G S G G+
Sbjct: 297 LIAVEPDLRRVTVTEGLTSESAAARLAAGGLAPPLYVHSSMDAGHAGRST-GVAGQTRRL 355
Query: 235 ----GGLLWGECIARHF--EWFEG-DPVIELLLKVKELYGLENEVTF--------RNVTV 279
G +L + + ++G DPV LL VK YG+ + +F R
Sbjct: 356 RLEVGNILSAGTNDGDYSKQRYDGKDPVRGLLDLVKREYGMTVDQSFEFVGINGGREAAA 415
Query: 280 SYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPI---LYVRDLLLNPPAYEI 336
S RP PL L TA Q+G +PT +P LL LP++ SG P Y+++LLL+PP +
Sbjct: 416 SKRPRPFPLTLSTAQQLGVLPTRSVPPLLSHALPAS-SGAPAGCRAYIQELLLHPPPRDT 474
Query: 337 ASTIQAICKLMSK----VTCSIPEFTC-----LVKLLELREANHIEFCRIKNVLDEILHM 387
A+ I C LMS +P + KLL +EA H+ F I + +
Sbjct: 475 AAAISEACVLMSTGLSPSDGGVPRLEVVPPQKITKLLWKKEATHVFFSEISAMASAVRRT 534
Query: 388 --YGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMIS------------ 433
+ ++ + ELL++PT + TG + E+LV+ CR A IG +++
Sbjct: 535 LEHDSNVVRRAGELLLNPTALKTGRNVTKESLVKACREAEEVIGAVVAEEVLDKGDWKPR 594
Query: 434 --------------------LDGESDQKICS----------YDNIPSEFFEDMESTWKGR 463
LDGE++ + + D +P +F + W+GR
Sbjct: 595 AQVATSIDVDAEVDDDEYNELDGETEADLEALALGLDAPPQVDYVPRQFLR-INEPWRGR 653
Query: 464 VKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWF 523
V+R ++ + E AA L+ + D +P+I A + + + + + ++W
Sbjct: 654 VRRDRVQSALDACETAARELAEVIGRDLVPLIETSNAEHQTRKVNRCHLEHDQRNNSLWL 713
Query: 524 KGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAK 583
+ P A E + LK VD G+++G+ W +TL VE AL+RY +A +
Sbjct: 714 ---RHLPAAVAKRVQAEGLIDLKHPVDRYGKQIGDRW-TTLAVETALDRYRVTSFEAGKE 769
Query: 584 VLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCL 643
V LR L+ +L+ + LV A+ + A+ H R W PA D +
Sbjct: 770 VAGALRALAGDLELLVADLVSAATFSTVATAVSLHARHAVSRGW-RPAQLLPANDASTPW 828
Query: 644 KMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA 703
+ GL P+W D AV N V + + +LTGPN GKS++LR+ AA+LL CGL P
Sbjct: 829 HLTGLVPFWMD--RDDAVVNDVLLDGISILTGPNMAGKSTVLRATAAAALLASCGLHCPV 886
Query: 704 ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETA 763
+SAS+P+FD++++ M S DSPA+G SS+ VEM+E+ ++ T++S V IDE+ RGTE
Sbjct: 887 KSASVPFFDSLIVRMSSTDSPAEGLSSYAVEMAEVGQMLDVVTAKSAVFIDELGRGTEAR 946
Query: 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM--GTEYLDGQTVPTWK 821
GT +AG+++E LD G GI +THLHG+ L L + A + M + DG+ PT +
Sbjct: 947 HGTAMAGAVVEELDRSGARGIFATHLHGVLDLGLNLSPFARRMMMETRDDRDGRLRPTLR 1006
Query: 822 LVDGICRESLAFETAKREGVPETIIQRAE------------------------------- 850
+V G CRESLA +TA GV + +++R++
Sbjct: 1007 MVSGECRESLALQTATDMGVSDEVVRRSQALLAQIPETVVVGNTPPAFQEKPSPASTILE 1066
Query: 851 ---------DLYIACGV-------NCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQT 894
+L ++ G ++ + PPP+ SCVYV+ R D Y G+T
Sbjct: 1067 EAPPLESLRELLVSVGALELGSVPEAGIVHVDDVPPPAARAWSCVYVLRRGDGWAYCGET 1126
Query: 895 DDLDGRIRAHR---GKEGMQSASFLYFVVP----GKSIACQIETLLINQLYSQGFLLANI 947
DDL GR+ AHR +EG + VP GKS A +E+ +I +L ++G L +
Sbjct: 1127 DDLGGRLGAHRATAAREGSNEVECAFIAVPREGGGKSRARALESRVIRKLKAEGIPLLSG 1186
Query: 948 ADGKHRNFGTSS 959
+D ++ +FG+++
Sbjct: 1187 SDARNTSFGSAA 1198
>gi|297838163|ref|XP_002886963.1| hypothetical protein ARALYDRAFT_338769 [Arabidopsis lyrata subsp.
lyrata]
gi|297332804|gb|EFH63222.1| hypothetical protein ARALYDRAFT_338769 [Arabidopsis lyrata subsp.
lyrata]
Length = 399
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/284 (77%), Positives = 245/284 (86%), Gaps = 15/284 (5%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
LK+G LNWEMLQFKS+FPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR +SIPKA
Sbjct: 100 LKDGNLNWEMLQFKSRFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSIPKA 159
Query: 99 GCPVVNLRQTLDDLTRNGYSV---------------CIVEEVQGPTQARSRKSRFISGHA 143
GCPVVNLRQTLDDLT + + CIVEEVQGPT ARSRK RFISGHA
Sbjct: 160 GCPVVNLRQTLDDLTADTQRLFGGELIKENSLPPYHCIVEEVQGPTPARSRKGRFISGHA 219
Query: 144 HPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVT 203
HPGSPYV+GLVG+DHDLDFPEPMPV+G+S+SA+GYC+ISI ETMK YSL+DGLTE+ALVT
Sbjct: 220 HPGSPYVYGLVGVDHDLDFPEPMPVVGISQSARGYCMISIFETMKAYSLDDGLTEEALVT 279
Query: 204 KLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVK 263
KLRT R HHLFLH SLR N SGT RWGE+GEGGLLWGEC R+FEWFEGD + ELL +VK
Sbjct: 280 KLRTRRCHHLFLHASLRHNASGTCRWGEFGEGGLLWGECSGRNFEWFEGDTLSELLSRVK 339
Query: 264 ELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCL 307
++YGL++EV+FRNV V +NRPRPLHLGTATQIG++PTEGIPCL
Sbjct: 340 DVYGLDDEVSFRNVNVPSKNRPRPLHLGTATQIGSLPTEGIPCL 383
>gi|303285989|ref|XP_003062284.1| mitochondrial-targeted muts 1 [Micromonas pusilla CCMP1545]
gi|226455801|gb|EEH53103.1| mitochondrial-targeted muts 1 [Micromonas pusilla CCMP1545]
Length = 1258
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 304/968 (31%), Positives = 466/968 (48%), Gaps = 128/968 (13%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKE-----------GTLNWEML 49
W + + + + RL ++N LG+++++K S E TL
Sbjct: 122 FWHAQVTGPSVRQTARRMARRLDFANPLGVNLSMKGASTTERADGTRPASARTTLYDYAK 181
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTL 109
K+ PR+VLL RVG+FYEAIG DA +LV +AGLNP G +P+AGCP+V +++TL
Sbjct: 182 GVKATHPRKVLLVRVGEFYEAIGYDAVMLVMHAGLNPMG---VSGVPRAGCPIVKIQETL 238
Query: 110 DDLTRNGYSVCIVEEV--QGPTQARSR-KSRFISGHAHPGSP-YVFGLV--GIDHDLDFP 163
D LT+ GY+ + EEV P R+ K R+++ P SP YV G G D D
Sbjct: 239 DRLTQRGYACVVCEEVPSMNPYGTRAPPKERYVAAVVTPASPQYVVGAAEHGDDVAFDSA 298
Query: 164 EPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTS-RYHHLFLHTSL--- 219
P PV+GV+ ++ GY I+++ ++ + +GLT ++ KL L+ H S+
Sbjct: 299 APPPVVGVAATSAGYTIVAVEPDLRRVVVAEGLTAESAAAKLAVGGTAPPLYRHVSVDRG 358
Query: 220 ---RQNTS----GTSRWGEYGEGGLLWGECI-------ARHFEWFEGDPVIELLLK-VKE 264
R N S G++R G+L C R+ GD +E LL+ V+
Sbjct: 359 HAARGNASAGVTGSTRRLRAEVEGILSAACADGSFIEQQRYGHDVRGDDPVEGLLELVRR 418
Query: 265 LYGLENEVTFRNVTVSYEN-------RPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCS 317
YGL + F VT + RP PL L TA Q+G +PT +P LL +LP++ +
Sbjct: 419 EYGLAPDAAFETVTAKATSCARTGKPRPAPLTLATAQQLGVLPTRSVPPLLSHVLPAS-A 477
Query: 318 GLPIL---YVRDLLLNPPAYEIASTIQAICKLMSKVTCS--IPEFTC-----LVKLLELR 367
G P Y+++LLL+PP ++A+ I ++ T + +P + KLL R
Sbjct: 478 GAPAACRAYLQELLLHPPPRDVAAKISTAAAALTSSTIAGGVPRLEVTPPGKVAKLLRTR 537
Query: 368 EANHIEFCRIKNVLDEILHM--YGNSELNEILELLMDPTWVATGLKIDFETLVEECRLAS 425
E +H+ F + + + + +E+ E L+ PT + G ++D L E C A
Sbjct: 538 EGSHVFFAEVVAMARAVRKTLTHDAAEIRTAGECLLSPTGLKVGRRVDARALAERCAEAE 597
Query: 426 VRIGEMISLDGESDQKICS---------------------------------------YD 446
I +++ + C +
Sbjct: 598 AIIARVVAAEALEGGGACGGYERERARDDDEEGEHAVVDDDDDAAAFDADAFDDAHDGVN 657
Query: 447 NIPSEF------FEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKA 500
+ P+ F W+GRV+R + E+A + A ALSLA+ ED P+I+ +A
Sbjct: 658 DAPARVPHVPRAFARFNEPWRGRVRRDVVATELAACDDALRALSLAIEEDLAPVIAAAEA 717
Query: 501 TTAPLG--GPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAV-------DS 551
A + + + + A+W + V AS E+I A+ D
Sbjct: 718 LAAAKTAKNRRCHLEHDARNNALWLR------HVPASVARGEKIDGDDGAISPLIHPRDR 771
Query: 552 KGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI 611
G+++ + W ST +VE AL+ Y + A V L+ L+ +L + LV A+ I
Sbjct: 772 YGKEISDRW-STPRVEAALDAYRVSSAACARAVASRLKALADDLGAHVADLVAAATFSAI 830
Query: 612 GKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD-AAEGSAVHNTVDMQSL 670
A+ H + RR W PA D K GL P+W D A GSAV N + + +
Sbjct: 831 AVAVTLHATRATRRGW-RPASLPPASDATTPFKTVGLRPFWMDDAGPGSAVENDITLDGV 889
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
+LTGPN GKS++LRS A +LL CGL VPA A++P+FDA+++ M S DSPA+G SS
Sbjct: 890 SILTGPNMAGKSTVLRSAAACALLASCGLFVPAREATVPHFDALLVRMSSTDSPAEGLSS 949
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790
+ VEM+E+ S++ T ++L IDE+ RGTE GT +AG++IE +D G GI +THLH
Sbjct: 950 YAVEMAEVGSMLDVVTPQTLAFIDELGRGTEATHGTAMAGAVIEAIDRAGARGIFATHLH 1009
Query: 791 GIFSLPLKIKNAAYKAMGTEYLD------GQTVPTWKLVDGICRESLAFETAKREGVPET 844
G+ L L++ A + D G+ PTWK+V G CRESLA +TA GV +
Sbjct: 1010 GVLDLDLELSPYARRVKMETVKDTAAGANGRVRPTWKVVPGECRESLALQTAIDMGVSDV 1069
Query: 845 IIQRAEDL 852
++ R++ L
Sbjct: 1070 VVSRSKAL 1077
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 856 CGVNCVMIAAREQPPPSIIGA-SCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSAS 914
C V AR++ PP GA SCVYV+ R D Y+G+TDDL GR+ AHR + +
Sbjct: 1142 CQDVAVGTVARDEIPPPAAGAWSCVYVLRRDDGWAYVGETDDLAGRLEAHRATARRECGA 1201
Query: 915 F------LYFVVP----GKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTS 958
+ VP GKS A +E I L L + +D ++ +FG++
Sbjct: 1202 AAGGVECAFVSVPREAGGKSAARALEARAIRALVEANVPLLSASDARNVSFGSA 1255
>gi|424513644|emb|CCO66266.1| predicted protein [Bathycoccus prasinos]
Length = 1310
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 343/1165 (29%), Positives = 527/1165 (45%), Gaps = 234/1165 (20%)
Query: 12 KPSTLHLVNRLKYSNLLGLDVNLKNGS--LKEGTLNWEML------------------QF 51
+P+ +++ R+ ++ LG+D+ L+ S L +G L + Q
Sbjct: 143 RPTVKNMLRRIDATDPLGVDMTLRGCSSRLYDGILGKKKTKTKTGGAGGALTVYDFARQT 202
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDD 111
+ K P+++LL RVGDFYE G +A LV +AGLNP G +P+AGCP +++TLD
Sbjct: 203 QEKHPQKILLIRVGDFYECFGWNAVCLVAHAGLNPMGNT---GVPRAGCPKNKVQETLDR 259
Query: 112 LTRNGYSVCIVEEV----QGPTQARSRKSRFISGHAHPGSP-YVFGLVGIDHDLDFP--E 164
LT +G+SV + EEV + T K RF+S P SP YV G D++F +
Sbjct: 260 LTSHGHSVVVCEEVPQMVKYGTLKAPPKDRFVSAIVTPASPMYVCGAGDRGEDVNFADEQ 319
Query: 165 PMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTS--RYHHLFLHTSL--- 219
+P+ V+ S+ GY ++ +L + ++ GLT + LR S + L+ H S
Sbjct: 320 ALPLCAVASSSLGYTLVRVLVDERVCRVDYGLTAEGCAAILRASGCAGNKLYKHRSFGAN 379
Query: 220 ---RQNTSGTS------RWGEYG-------------------------EGGLLWGE---- 241
+ N+ G S RW E G EG ++ E
Sbjct: 380 HASKSNSRGNSGQSRRLRW-EVGAIESVVSEDHYDVTEIADENDFYNDEGKMINSEDDRR 438
Query: 242 --CIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENR--------PRPLHLG 291
+ ++GD V L + +GL+ FR V +S + R RPL L
Sbjct: 439 RRRRGQRRLRYDGDVVQGFLDLTRREHGLKPNEDFRVVNISNDPRLAEAERGSVRPLSLN 498
Query: 292 TATQIGAIPTEGIPCLLKVLL-----PSNCSGLPILYVRDLLLNPPAYEIASTIQAICKL 346
TA Q+G +P+ G+P LL ++ P++C Y+++LLL+PP +++A +IQ C+
Sbjct: 499 TAQQLGVLPSRGVPPLLAAIVNDKDVPASCRS----YLQELLLSPPPHDVARSIQLACEK 554
Query: 347 MSKVTCSIPEF-----TCLVKLLELREANHIEFCRIKNVLD--EILHMYGNSELNEILEL 399
S+P T + LL REA+H+ F + + D E + +++L
Sbjct: 555 FKNTNASMPNLETLPVTKIATLLNSREASHVFFADLFAMADACERFLEHDDADLRIAARS 614
Query: 400 LMDPTWVATGLKI------DFETLVEECRLASVRIGEMISLD------------------ 435
L++ AT K+ D + L E CR I +IS D
Sbjct: 615 LLEK---ATSRKLGTRAYEDEKKLAETCRNVKQIIESIISSDVFDEYHLGYSSKSATLSG 671
Query: 436 --------------------------------GESDQKICSYDNIPSEF-------FEDM 456
E D +I D S F F
Sbjct: 672 TITLRDDVSNDDGDDDATDDDDENDSTLGEDDDEVDDRIVRCDPPSSSFLRFFPRRFAFE 731
Query: 457 ESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAR 516
W+GRV+R + I +V+ AA +L A+ +D LP++ + T + EI + +
Sbjct: 732 NERWRGRVRRDTVAEAIDKVDAAATSLHDAIVDDLLPVLEKSDVTRKARA-KRCEIEHCQ 790
Query: 517 EHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEA 576
+ ++W +G +P L D GR++ + W +T VE+ LERY ++
Sbjct: 791 RNNSLWLRGVSKTAVSDFESPSSSPTTSLIHPRDRFGRELSDRW-TTQNVEDKLERYRQS 849
Query: 577 GAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE 636
+A+A V LR LS+ LQ + L+ S L I A+ AHVS+ + + W P L D E
Sbjct: 850 CREAQAAVAGQLRMLSTSLQPFVGALIACSTLSTISLAINAHVSKTQSKGWTIPRLLDPE 909
Query: 637 LDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLG 695
D ++ L P+W D+ A+ + + NTVD+ + LTGPN GKS++LRS+ + +LL
Sbjct: 910 -DCKTPFRVEDLEPFWMDSTADLNVISNTVDIDGMITLTGPNMAGKSTILRSLTSVALLS 968
Query: 696 ICGLMVPAESASI-PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLID 754
CGLMVPA I P FD+I L M S DSP++G S F VEM EI+ ++ ++S S V +D
Sbjct: 969 QCGLMVPARGECIVPRFDSITLRMASSDSPSEGLSGFAVEMMEIKCVMEESSSSSFVCVD 1028
Query: 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA-MGTEYL- 812
E+ RGTE A GT IA ++IE LD +GC G+ +THLHG+ ++ A MGT
Sbjct: 1029 ELGRGTEAAHGTAIAAAVIEKLDYLGCRGVFATHLHGVLDCDTRLSPFAKNMRMGTTTTP 1088
Query: 813 DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY---IACGVNCV-------- 861
+G+ PTWK+ DG CRESLA +TA G+ + +++RA+ I N +
Sbjct: 1089 EGKMSPTWKIEDGECRESLAIQTAADCGLEDDVLRRAQTFLRQNITTAKNSISVRKGDMS 1148
Query: 862 -------------------------MIAAR-----EQPPPSIIGASCVYVMLR---PDKK 888
++ AR E+ A+ V+V+LR P K
Sbjct: 1149 SSPPVVSSSKVEKNRNSGISDLASGLLTARSFILAEEGEKDEEDAAGVFVVLRNEHPPAK 1208
Query: 889 L-----------------YIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIET 931
+ Y+G+T+ + R+ +HR K G V GKS A IET
Sbjct: 1209 VAHGCSVVYVIRDANGWTYVGETESIANRLNSHRHKYGSDIDCAFVTVAQGKSTARAIET 1268
Query: 932 LLINQLYSQGFLLANIADGKHRNFG 956
I + +G L + D H NFG
Sbjct: 1269 ATIREFRRKGVPLKSDFDASHENFG 1293
>gi|384246546|gb|EIE20036.1| hypothetical protein COCSUDRAFT_58259 [Coccomyxa subellipsoidea
C-169]
Length = 1173
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 326/1098 (29%), Positives = 501/1098 (45%), Gaps = 163/1098 (14%)
Query: 3 WQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLC 62
W+ L +P+ ++ +L +LLGL G ++ L K + P +VLL
Sbjct: 81 WEGVLGGVDRPAAREMMAQLDLRHLLGLAGGTTYGRGRKAPLLPFFTSVKREHPTKVLLV 140
Query: 63 RVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNG-YSVCI 121
RVG+FYE +G DA +L+++AGLNP G P P+AGCP N+R+TL L + SV +
Sbjct: 141 RVGEFYETMGTDAVVLMQWAGLNPMGAGNP---PRAGCPAANIRRTLQCLVQEANLSVVV 197
Query: 122 VEEVQGPTQARSR---KSRFISGHAHPGSP-YVFGLVGIDHDLDFPEPMPVIGVSRSAKG 177
EE P SR K RF++G P P Y++GL+ + D P++ ++ SA G
Sbjct: 198 CEEAPEPRSYGSRTKQKQRFVAGIVTPAQPHYLYGLLDANMDPSLGGTPPILAIAASAGG 257
Query: 178 Y---------------------C---------IISILETMKTYSLEDGLTEDALVTKLRT 207
Y C ++ + M T ++ +GLTEDA+ +L
Sbjct: 258 YKARILASPSFLCNMQSGVALLCEAPWLDLQQVLEVQSDMMTCAITEGLTEDAVSARLHQ 317
Query: 208 ------SRYHHLFLHTSLRQNTSGTSRWG--------EYGEGGLL-----------WGEC 242
S+ HHL+ + SRWG EG L W +
Sbjct: 318 GMFPPLSKTHHLWNQFA---GPCTRSRWGLSPPLYIHSSVEGSLQGRLSEGSVESEWEQR 374
Query: 243 IARHFEWFEG--------DPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTAT 294
+ + F G D LL ++ ++ + F + RP+PL+ TA+
Sbjct: 375 VVQIFRSQVGIVKRYNARDAEEGLLTLLRRDLCMDADAPFTRIAARPGERPKPLYHSTAS 434
Query: 295 QIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSI 354
Q+G T+GIP LL +LP N +++ LLL PP +A+ C +S+ +
Sbjct: 435 QMGLHKTKGIPNLLDYVLPRNAPQGARRWLQRLLLLPPTPGVAAASWQACNFLSETVVPL 494
Query: 355 PEFTCL----VKL-LELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATG 409
P +T L + L L+ ++A FC + +L + + EL ++E L+ T
Sbjct: 495 PHWTILDASNITLKLKSQQATRSFFCDLAAMLSSVADGAADPELRRLMECLLVVAQAETR 554
Query: 410 LKIDFETLVEECRLASVRIGEMISLD--GESDQKICSYDNIPS------EFFEDMESTWK 461
D + L+ CRLA I ++ G SD+ + F E ++
Sbjct: 555 FGSDLDGLIRACRLAVKEIDVVVDRTSCGRSDRSDSGGGEVDGGLEVIGRLFTANEG-FR 613
Query: 462 GRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAV 521
G+++ +E IAEVE A L + + +A ++ L + +Y + AV
Sbjct: 614 GQIRDDQMEQYIAEVEAAGSRLEAELGRVLSECMGAWEAASS-LAALRPVTVYDPVNVAV 672
Query: 522 WFKGKKFRPTVWASTPGEEQIKQLK--PAVDSKGRKVGEEWFSTLKVEEALERYHEAGAK 579
W K A +P ++ +L D G V + FST ++E ALE Y A
Sbjct: 673 WLKA-------IAKSPVHKEASRLGLIHPRDRNGSLVTDR-FSTPELEAALEAYRSACTA 724
Query: 580 AKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPA-LKDIELD 638
A V + LR L++ L + LV AS++ IG AL AHV + R R+W P L + D
Sbjct: 725 AVDHVRDRLRTLAASLTAMLPELVCASVVSTIGAALDAHVRQARERQWAQPQQLPRVHDD 784
Query: 639 GAN-CLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGIC 697
+++ G+ PYW D A S V N+ M S+ LLTGPN GKS+++R A +LLG C
Sbjct: 785 APRPAMQVEGMWPYWLDGAAPSTVRNSFAMNSMLLLTGPNMAGKSTVMRGTMAVALLGAC 844
Query: 698 GLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEIC 757
GL P ++A++PY DA ML S D+P +G SSF +EM+E+R ++ + +LVL+DE+
Sbjct: 845 GLFAPCDAAAVPYIDAFMLRTFSADAPVEGLSSFAIEMTEMRYVLEDAGADALVLVDELG 904
Query: 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY------ 811
+GTE G +A + +E L + C GI +THLH + L L MGT++
Sbjct: 905 KGTEVRAGAALAAAFLERLTALRCKGIFATHLHPLLDLELDAPGLRRMKMGTQWEEREKH 964
Query: 812 ----------LDGQT------------VPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
++ QT VPTW++ +G CR+SLA E A + +P I+ RA
Sbjct: 965 SPQSSELDALIEAQTHSTATAPRGRRQVPTWRMEEGECRDSLAMEVAAQCKLPPDIVARA 1024
Query: 850 EDLYIACGVNCVM--------------------------IAAREQPPPSIIGASCVYVML 883
LY NC + + A + PPPS +G SCVYV+
Sbjct: 1025 SHLYND-ARNCAIEEENSLATNGNDSLQGISLDDLTVQVLGAGKVPPPSTVGCSCVYVVR 1083
Query: 884 RPDKKLYIGQTDDLDGRIRAHRGK---EGMQSASFLYFVVP----GKSIACQIETLLINQ 936
R D Y G++DD+ GR+ HR +G ++ +Y VP GKS A IE I +
Sbjct: 1084 REDGFFYCGESDDIKGRLARHRRAGPVKGGRTMEAVYMAVPAGLAGKSAAAAIEARAIRE 1143
Query: 937 LYSQGFLLANIADGKHRN 954
+ GF L + D + +
Sbjct: 1144 MRDAGFPLISDHDARTKR 1161
>gi|38567843|emb|CAE05686.2| OSJNBb0002J11.13 [Oryza sativa Japonica Group]
Length = 533
Score = 370 bits (949), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 163/224 (72%), Positives = 200/224 (89%)
Query: 120 CIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYC 179
CIVEE+QGPTQAR+RK RFISGHAHPGSPYVFGL +DHD++FP+PMPV+G+SRSAKGYC
Sbjct: 306 CIVEEIQGPTQARARKGRFISGHAHPGSPYVFGLAEVDHDVEFPDPMPVVGISRSAKGYC 365
Query: 180 IISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLW 239
+IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH+SLR N+SGTSRWGE+GEGGLLW
Sbjct: 366 LISVLETMKTYSAEEGLTEEAVVTKLRICRYHHLYLHSSLRNNSSGTSRWGEFGEGGLLW 425
Query: 240 GECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAI 299
GEC + FEWF+G+P+ ELL KV+E+YGLE + FRNV+VS E RP+PL+LGTATQIG I
Sbjct: 426 GECSGKSFEWFDGNPIEELLCKVREIYGLEEKTVFRNVSVSLEGRPQPLYLGTATQIGVI 485
Query: 300 PTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAI 343
PTEGIP LLK++LP N GLP LY+RDLLLNPP++++AS++Q +
Sbjct: 486 PTEGIPSLLKIVLPPNFGGLPSLYIRDLLLNPPSFDVASSVQEL 529
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/114 (78%), Positives = 103/114 (90%)
Query: 6 RLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVG 65
+++ CRKPS++ L RL YSN+LGLD L+NGSLK+G+LN EMLQFKSKFPREVLLCRVG
Sbjct: 127 KMERCRKPSSMQLTQRLVYSNILGLDPTLRNGSLKDGSLNTEMLQFKSKFPREVLLCRVG 186
Query: 66 DFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSV 119
DFYEA+G DACILVE+AGLNPFGGLR +SIPKAGCPV+NLRQTLDDLTR GYSV
Sbjct: 187 DFYEAVGFDACILVEHAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRCGYSV 240
>gi|307104643|gb|EFN52896.1| hypothetical protein CHLNCDRAFT_138439 [Chlorella variabilis]
Length = 1223
Score = 356 bits (914), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 279/914 (30%), Positives = 429/914 (46%), Gaps = 138/914 (15%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDD 111
K ++P+ V L RVG+FYE IGIDA +LV++AGLNP G P+AGCP NLR+T+DD
Sbjct: 127 KKQYPKYVTLVRVGEFYETIGIDAVLLVQHAGLNPMGS---GVTPRAGCPRQNLRRTVDD 183
Query: 112 LTRNGYSVCIVEEVQGP---TQARSR-KSRFISGHAHPGSPYVF-GLVGID-----HDLD 161
L G SV + EE P R+R K R+++ P +P++ GLV D D++
Sbjct: 184 LVSAGLSVVVCEEAPEPYSYGSMRTRQKQRYVAAVVTPANPHLLHGLVDDDTGRLERDIN 243
Query: 162 FPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHH-LFLHTSLR 220
P++ + GY ++ + ++ + +GLTEDA+ +L LFLH
Sbjct: 244 IDAAPPLLALVPQVGGYTVLEVSVDLQVVQVMEGLTEDAVYARLHEGGLAPPLFLHVP-- 301
Query: 221 QNTSGTSRWGEYGEGGLLWGECIARHF-------------EWFEGDPVIELLLKVKELYG 267
+++ + R G W + +A F +W EG LL +V+ + G
Sbjct: 302 ASSASSDRRLSEGTFEREWEQRVATIFRSQVGVVERYNDPDWLEG-----LLTRVRLMLG 356
Query: 268 LENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDL 327
L+ F + S ++RPRPL+ TA +G G PCL+ LLP ++R L
Sbjct: 357 LDAATPFTVIRASTKDRPRPLYYSTALNLGLHKARGQPCLVDYLLPDGTPLPARRWMRRL 416
Query: 328 LLNPPAYEIASTIQAICKLMSKVTCSIPEF-----TCLVKLLELREANHIEFCRIKNVLD 382
LL PP A+ + +C++++ + S+P F +V L REAN F I +
Sbjct: 417 LLLPPPATTAAAVHRVCRILADLRESLPVFPLVPAASVVLKLRNREANDTFFREIGELCQ 476
Query: 383 EILHMYG--NSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQ 440
+L + N E+ + L++ + G+ + E L + C A I E++ D Q
Sbjct: 477 ALLDLLSRTNGEIPVLASSLLEVSCREMGVALTREQLQQGCATALQAIHEVVDHD---TQ 533
Query: 441 KICSYDNIPSEF---FEDM-----------ESTWKGRVKRIHIEPEIAEVEMAAEALSLA 486
+ P E ED+ E ++G+V+ + + V MAA+ +
Sbjct: 534 LVGGDPEWPPELEDCCEDVREGLWRLKQANEGPFRGKVRDEVMAEDCEAVAMAADRVRRE 593
Query: 487 VTEDFLPIISRIKATTAPLGGP---KGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIK 543
+ F P++ + T A G P K I+Y + A+W + K + ++
Sbjct: 594 LELAFEPLL--LAHTRA--GEPAKLKPSIIYDSANNALWLRIPK-------NAAAQQAAG 642
Query: 544 QLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILV 603
L D GR + +++ ++ AL+ Y A + A V LR L+S+LQ LV
Sbjct: 643 DLIHPHDRNGR-LESSAYASHGLQSALDDYRRACYDSAAAVRRHLRELASQLQAVNTELV 701
Query: 604 FASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANC--------------------- 642
A+ + V AL AH E RR W P L DG+
Sbjct: 702 CAATMAVSAAALDAHTREALRRGWHLPTLAYTS-DGSGAPAALPTAQEGSQAALPAAQDA 760
Query: 643 -----LKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGIC 697
++ PYW D E + V NT+ ++ + LLTGPN GKS++LRS+CAA+LLG C
Sbjct: 761 SQQQPFEVVDFWPYWLDGWETATVRNTLSLEGMALLTGPNMAGKSTVLRSMCAAALLGAC 820
Query: 698 GLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEIC 757
GL PA SA++PYFDA ML + DSP +G+SSF VEM+E+R ++ + SLVL+DE+
Sbjct: 821 GLYAPAASATVPYFDAFMLRTFASDSPLEGRSSFAVEMTEMRYVLEDLSPSSLVLVDELG 880
Query: 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT---EYLDG 814
+GTE G+ +AG+++E LD C GI +THLH + + L + N + M T E D
Sbjct: 881 KGTEVRAGSALAGALMEELDAARCRGIFATHLHSLVDMNLNLTNTEFLMMETAPAEEEDE 940
Query: 815 QTV-----------------------------------PTWKLVDGICRESLAFETAKRE 839
+ + PTW++V GI SLA + A+R
Sbjct: 941 EVLRPLLMAGLEEGGRQRSGAGRASSGGGASGQGAPRKPTWRIVPGISTVSLALDVARRC 1000
Query: 840 GVPETIIQRAEDLY 853
+P + RA LY
Sbjct: 1001 RLPRRTLDRAGQLY 1014
Score = 46.2 bits (108), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 867 EQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVV-PGKS- 924
+ P PS +G SCVYV+ RPD Y R G + +Y V+ PG +
Sbjct: 1127 QAPAPSTVGTSCVYVLRRPDGFFY--------------RTGHGGPNMDLVYCVLGPGAAG 1172
Query: 925 IACQIETLLINQLYSQGFLLANIADGKHRNF-----GTSSRPVET 964
+A +E+ +I +L +GF + + D + R+ G S P E+
Sbjct: 1173 LAKAVESCVIRELQRRGFPMRSATDARRRHVAGAGSGGSRSPAES 1217
>gi|428168963|gb|EKX37901.1| hypothetical protein GUITHDRAFT_77597 [Guillardia theta CCMP2712]
Length = 1052
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 293/1004 (29%), Positives = 468/1004 (46%), Gaps = 135/1004 (13%)
Query: 12 KPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAI 71
+PS ++ + LG+D N+K S + +L + + + PR+VLL RVG+FYEA
Sbjct: 6 RPSARGMLPLINSKYPLGVDPNIKGVSESKDSLFEFYKKVRRQHPRKVLLVRVGEFYEAF 65
Query: 72 GIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQG-PTQ 130
G A +LV++AGLNP G +P+AGCPVVN+R+TL DL G+SV + EE+ P
Sbjct: 66 GYCAVLLVQHAGLNPMGS----RLPRAGCPVVNIRRTLQDLVDAGHSVVVCEEMPVLPGA 121
Query: 131 ARSRKSRFISGHAHPGSP-YVFGL-VGIDHDL-----DFPEPMPVIGVSRSAKGYCIISI 183
+KSRFI+G P SP YV G+ + D+D D P P+IG++ + +G + +I
Sbjct: 122 KGKKKSRFIAGIVTPASPIYVHGMSLERDNDAGSRCSDLP---PIIGLAATTRGIILYTI 178
Query: 184 LETMKTYSLEDGLTEDALVTKLRTSRYHH-LFLHTSLRQNTSGTSRWGEYGEGGLLWGEC 242
++ + +G+TE++++ +L L+LH +R+ R G +
Sbjct: 179 SLDTRSVKVMEGMTEESVMARLAAGGCSPPLYLHNKIRK-----VRVCSGGRAVMNVAVI 233
Query: 243 IARHFE---------------WFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRP 287
R E G + +L ++ L F ++ RPRP
Sbjct: 234 PERCREPPAAIRSRASQSMTLLRPGTFLRAILDAIRVDMSLAAAENFTILSEKSTGRPRP 293
Query: 288 LHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPIL--YVRDLLLNPPAYEIASTIQAICK 345
L+L TA QIG + + +P L+ ++ + + ++ + + LL+P ++A +
Sbjct: 294 LYLTTARQIGILHNDAVPSLVDAIVTKDSAAEHLIRSFFQRCLLHPLPTDVADAVSDALT 353
Query: 346 LMSKVTC---SIPEFTCL-----VKLLELREANHIEFCRIKNVLDEILHMYGNSELNEIL 397
+++ + S+P F + + + EAN++ F I V + +L +
Sbjct: 354 HLNQTSSLLHSLPRFPVMSTSRIARYILACEANNMIFEDISRVFSTTASSLRSPQLVDFS 413
Query: 398 ELLMDPTWVATGLKIDFETLVEECRLASV------RIGEMISLD----GESDQKICSYDN 447
++ V + DF+ VE L I E I G +K+ +
Sbjct: 414 VCVLKGEKVRGAVADDFQGNVEVEPLLKAADQVIEEIKETIIFSDRHAGSEQRKLEDEEG 473
Query: 448 IPSE---------FFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRI 498
+ + FF E + G+VK E V+ A + + +E+ +P+
Sbjct: 474 LIEDSPGWTRLLDFFSCNEQ-FAGKVKFERAEKPFQLVDDAKDRVIRCFSEELVPVWG-- 530
Query: 499 KATTAPLGGPKGEILYAR----EHEAV----WFKGKKFRPTVWASTPGEEQIKQLKPAVD 550
A + +GE AR +H+ V + +G PG+ + L D
Sbjct: 531 ----ALVENSRGESKKARKVTLDHDVVNNDLYIRGISLERAEKLLPPGQASL--LVVPRD 584
Query: 551 SKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLV 610
GR + + S+ EA+ Y EA A A V E+LR LSS + ++ L+ +
Sbjct: 585 RNGRLL-HDCVSSRGSAEAIAAYKEACEHATAAVREVLRTLSSFVGDRMPFLINSVAFCT 643
Query: 611 IGKALFAHVSEGRRRKWVFP-ALKDIELD-GANCLKMNGLSPYWFDAAEGSAVHNTVDMQ 668
I KAL AH +E R+ W FP +K E G + L + GL PYW D + V N + +
Sbjct: 644 IAKALVAHYAEASRKSWCFPDRVKSQEGQVGEDTLNIGGLIPYWMDPQKPVIVANDIKLS 703
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+ +LTGPN GKS+++RS+CA SLLG CGLMVPA A +P D+ L S+DSPA+G
Sbjct: 704 GMIVLTGPNTAGKSTIMRSVCAVSLLGNCGLMVPATIAQVPVQDSYFLRAASFDSPAEGL 763
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788
S+F +EM + +I+ TS++LVL+DE+ RGTET G IAG+++E L C GI +TH
Sbjct: 764 SAFAMEMLDTATILRDATSKTLVLVDELGRGTETRAGAAIAGAVLEELLARRCRGIFTTH 823
Query: 789 LHGIFSLPLK-IKNAAYKAMGTEY-LDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
LH +F LPL+ I A ++ M + +G PTW+LV G C +SLA A++ G+P +I
Sbjct: 824 LHEMFDLPLEIIGQARFQQMEVKMKKNGAWDPTWRLVAGRCVDSLAVHAAEKCGIPGMLI 883
Query: 847 QRAEDLYI------------------------------------------------ACGV 858
+RA+ L A V
Sbjct: 884 RRAKTLVKWQNRVSKRSVQGEQAGLEEEEGAAAENQRSLEEAIAVLRNLIQKQQGGAKDV 943
Query: 859 NCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIR 902
+I +P P+ G+S VY+ Y+G+TDD+ RI+
Sbjct: 944 EVTIIDESSEPHPNAQGSSHVYLARTSLGFFYVGETDDIRTRIQ 987
>gi|224012443|ref|XP_002294874.1| mismatch repair protein MutS [Thalassiosira pseudonana CCMP1335]
gi|220969313|gb|EED87654.1| mismatch repair protein MutS [Thalassiosira pseudonana CCMP1335]
Length = 963
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 288/1003 (28%), Positives = 465/1003 (46%), Gaps = 136/1003 (13%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
LN+ Q FP VLL RVGDFYE+ G+DA +LVE+ GLNP S +AGCP
Sbjct: 1 LNFVRTQKALYFPDTVLLVRVGDFYESYGVDAVLLVEHCGLNPMA-----SKARAGCPWR 55
Query: 104 NLRQTLDDLTRNGYSVCIVE-EVQGPTQARSRKSRFISGHAHPGSP-YVFGLVGIDHDLD 161
N++ TLD LT G+ V +VE + G ++ K+R+++ +P Y+ GLV D+D
Sbjct: 56 NVQATLDGLTNAGFRVAVVEANIAGGSKGSRLKTRYLAQVVSSANPTYMHGLVLNDNDSA 115
Query: 162 FPEPMPV----IGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRT-SRYHHLF-- 214
+ V +GV + +GY ++ + +T + + LT +A+ +L LF
Sbjct: 116 TDDSPSVRRSYVGVIETNRGYTLVEVSAEERTAMISERLTAEAVSCRLAAYPPADPLFYV 175
Query: 215 -----LHTSLRQNTSGTSRWGEYGEG---GLLWGECIARHFEWFEGDPVIELLLKVKELY 266
+H R + W + + W C + + + L+ V
Sbjct: 176 PPSDDVHNGRRSDRLPFLPWRQSAASISPQIPWQNCGYQMGRKVRVKTLPQSLV-VSPSP 234
Query: 267 GLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRD 326
GL + + VS PLHL TATQ+G + IP L+ LLP + ++R
Sbjct: 235 GLSDVARAKQTIVSAFLPSLPLHLETATQLGLMGDPAIPPLISSLLPDSAPSSTRRFLRR 294
Query: 327 LLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC------LVKLLELREANHIEFCRIKNV 380
LL PP +IA ++ + +++ + + ++P + L+ +A+ + I +
Sbjct: 295 WLLIPPPPDIADSMSQLVRVLKEDSTALPSLNAPTLTGKVTSLIRAGQASAAVYRDILSA 354
Query: 381 LD---EILHM--------YGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIG 429
LD E+L + G+S +N +L +L +++T ++ ++
Sbjct: 355 LDSSSELLFLDDRDTGVEAGSSLINPLLRIL------------EYDTGLDVVSTHTMEDD 402
Query: 430 EMISLDGESDQKICSY--DNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAV 487
E+ ++D ++ + SY D +P F+E E W+GRVK +E + V AA L+ A+
Sbjct: 403 ELQNVDTDNQSESISYFGDVVPFAFYERNELIWRGRVKPAALE-QSHSVPEAARKLAEAI 461
Query: 488 TEDFLPI------------ISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWAS 535
+F I +S K T +P I+ + + + K P+ WA+
Sbjct: 462 AVNFWGIETLIYDEKGDIDLSDAKETKSP-------IVQDIFNNIIAIRAK---PS-WAT 510
Query: 536 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL 595
+ + D G K+ + ++T +V+ A+ Y +A A+ +V+ +L LS +L
Sbjct: 511 KSSDYYHPR-----DRNG-KILKTRYTTERVDLAVSEYVDACDNARKEVMSVLTRLSYKL 564
Query: 596 --QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWF 653
++ ++ AS L +I H + + W + D D + + PYW
Sbjct: 565 VDGDHLSSILQASHLNLILSTAANHAASSNAKGWNTAKIYDESGDDS-AGHFESVWPYWM 623
Query: 654 DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS-IPYFD 712
D ++V NT + LFLLT PN GKS+L+RS AA+LL GL P S I FD
Sbjct: 624 D--RTNSVPNTFEFDGLFLLTAPNMSGKSTLMRSTAAAALLIASGLCAPVGKGSFIRRFD 681
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
++ + S D P + KS+F EM ++ I+ + +RSLV +DEI RGT GT +AG+I
Sbjct: 682 SLFVRGASADVPTEDKSAFGSEMGDVACILRSCGNRSLVFVDEIGRGTSPTDGTSLAGAI 741
Query: 773 IETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY---KAMGT-EYLDGQTVPTWKLVDGICR 828
+E + G G+ +THLHGI ++P ++ K M E DGQ T+ L +G C
Sbjct: 742 LENMAERGMSGMFATHLHGILNIPYSSDASSRIRKKRMAICEDNDGQLKWTYTLEEGECT 801
Query: 829 ESLAFETAKREGVPETIIQRAEDL----------------------------------YI 854
SLA TA + G+PE+I++RAE+L +
Sbjct: 802 NSLALLTAAKFGLPESILKRAEELKGVEYDIGSTPSFQYLRSTTPTTNFDRATAILEEVV 861
Query: 855 ACGVNCVMIAAREQPPPSIIGASCVYVML----RPDKKLYIGQTDDLDGRIRAHRGKEGM 910
G V I PPS G+SCVY++ + Y+G+TD L R+ HR K G
Sbjct: 862 GQGTASVHIPPSFMAPPSFEGSSCVYILKIGGESNNSMYYVGETDSLARRLSQHRAK-GD 920
Query: 911 QSASFLYFVVP---GKSIACQIETLLINQLYSQGFLLANIADG 950
Q +S + GK+ A IE+L+I +L GF LA++ADG
Sbjct: 921 QWSSLSAVAIQIEGGKTSARNIESLVIQRLAKSGFNLASVADG 963
>gi|219110543|ref|XP_002177023.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411558|gb|EEC51486.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1258
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 283/976 (28%), Positives = 421/976 (43%), Gaps = 146/976 (14%)
Query: 2 WWQERLQMCRKPSTLHLVNRLKYS------NLLGLDVNLKNGSL---------------- 39
+WQE L +PS LV +L + N L ++ G++
Sbjct: 234 YWQEPLLQVTRPSARTLVAQLDATQCPMGYNPLAQPMDPLRGTVLDTDAQSSSSTTATTT 293
Query: 40 --KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 97
K+G+ Q K +P ++L R GDFYE G+DA +LVE+ GLNP G + K
Sbjct: 294 AGKKGSFLAYCRQQKESYPDCIILTRCGDFYETFGLDAVMLVEHCGLNPMG-----NKAK 348
Query: 98 AGCPVVNLRQTLDDLTRNGYSVCIVEEV--------QGPTQ-ARSR-KSRFISGHAHPGS 147
AGCP N++ T+D L G+ V + EE G T A+SR KSRF++ S
Sbjct: 349 AGCPYRNVQATIDGLISQGFRVAVYEEAPDTDSSTGTGATGGAKSRIKSRFLAQIVSTSS 408
Query: 148 P-YVFGLV---GIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVT 203
P Y++GLV D + P P +G+ A GY ++ I + + D LT +A+
Sbjct: 409 PTYLYGLVLLSNADTLVTAPPSRPHVGILSLAAGYTMVEISIEERNVRVSDRLTPEAVAC 468
Query: 204 KLRT-------------SRYHHLFLHTSLRQNTSGTSRWG--EYGEGG-----------L 237
+L Y + + LR SR E G G +
Sbjct: 469 RLAAYPPADPLFYVPSEGEYEYKCSTSDLRSLPFLPSRRDSFEIGSSGARLRTIIIPPTV 528
Query: 238 LWGECIARHFEWFEGDPVI--ELLLKVKELYGLENEVTFRNVTV--------------SY 281
+ G +A E +I LL +K EN + + TV S+
Sbjct: 529 VEGPGVAGVSEAERAKRIITASLLDMIKSPRSSENIASDQTATVEDFTLLAPSNTQADSH 588
Query: 282 ENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQ 341
PL++ TA Q+G + IP L+ +LP + ++R LL PP + +
Sbjct: 589 TTSTNPLYVETAMQLGLMNDYAIPSLVSHILPESAPAATRRFLRRFLLTPPPPRVGDAMA 648
Query: 342 AICKLMSKVTCSIPEFTC--LVKLLELREANHIEFCRIKNVLDEILHMY-------GNSE 392
+ +++ S+P T + K+L L A +L + M NS+
Sbjct: 649 TLVRILQSSDASLPPLTVPPVGKVLALLRAGQASAQVYTEMLKSMHSMVLLLDTFPSNSD 708
Query: 393 LNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMIS---------LDGESDQKIC 443
+ L L++ +GL D +L + C A I +IS LD + I
Sbjct: 709 FVQSLMTLLE---YESGLAGDPNSLRDRCHEAIKEIEAIISPIHHSSWSELDPSAIDCIT 765
Query: 444 SYDN-IPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATT 502
+ +P FFE E+TW+GRV+ + +V+ AAE L AV +DF R
Sbjct: 766 DFGGLVPRAFFERNEATWRGRVQPDVVLKSYTDVQRAAELLGEAVAKDFWQT-PRQDLEG 824
Query: 503 APLGGPK--------GEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGR 554
P K IL +E K F P D G
Sbjct: 825 NPDTTSKSLIAQDIFNNILAMKEVPQGADKDLFFHPR------------------DRNG- 865
Query: 555 KVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL--QTKINILVFASMLLVIG 612
K+ F+T V+ AL Y A +A V + L LS L I +V AS +I
Sbjct: 866 KILRNRFTTEYVQSALSDYVAACDRACQDVTDTLVRLSQLLCDDGHIPAVVQASHANLIL 925
Query: 613 KALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFL 672
+ F H W + L + L PYW D +E A N+ ++ ++L
Sbjct: 926 SSAFHHAVRANAAGWNLARTYEATLSEDTAGYLKDLWPYWMDKSE--ATSNSYELNGMWL 983
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVP-AESASIPYFDAIMLHMKSYDSPADGKSSF 731
LT PN GKS+++RS AA+LL +CGL P +SI FD I + S D P++ KS+F
Sbjct: 984 LTAPNMSGKSTIMRSTAAAALLSVCGLCAPLGPGSSIRRFDHIFVRGASADVPSEQKSAF 1043
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791
EM +I +++ + +SLV +DE+ RGT GT +AG+++E + G GI +THLH
Sbjct: 1044 GAEMGDIAALLRSCGGKSLVFVDELGRGTSPRDGTRLAGAVLEAMTMSGMSGIFATHLHD 1103
Query: 792 IFSLPLKIKNA-AYKAMGTE--YLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
+ LPL+ K K MG +LDG T++L DG+C +SLA TA R G+PE++IQR
Sbjct: 1104 VLDLPLRSKGRIVKKRMGVHKCHLDGHQW-TYRLEDGVCTDSLALLTAARFGLPESVIQR 1162
Query: 849 AE--DLYIACGVNCVM 862
AE D YI + V+
Sbjct: 1163 AEALDSYIPRASSSVL 1178
>gi|397614208|gb|EJK62659.1| hypothetical protein THAOC_16718 [Thalassiosira oceanica]
Length = 1098
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 228/767 (29%), Positives = 346/767 (45%), Gaps = 104/767 (13%)
Query: 284 RPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAI 343
R PLHL TATQ+G + IP L+ LLP + ++R LL PP ++A + +
Sbjct: 330 RTNPLHLETATQLGLMSDPSIPDLVSSLLPPSAPATSRRFLRRWLLVPPPPDVAGAMSDL 389
Query: 344 CKLMSKVTCSIPEFTC--------LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNE 395
+ + +P +V L+ R+A+ + + LD + E
Sbjct: 390 VSHLLRSDSPLPPGVASAPSLTGRVVSLIRQRQASAAVYRDVVAALDAASTALREGD-GE 448
Query: 396 ILELLMDPTWVATGLKIDF-ETLVEECRLASVRIGEMISL-DGESDQKICSY--DNIPSE 451
++ L+D TG+ + E LVE A I ++ DG S D +P
Sbjct: 449 VVRPLLDVLRHDTGIAVSCPEELVERLGEARREIDAVVVRGDGRDGADAISDHGDAVPPA 508
Query: 452 FFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIK---------ATT 502
FFE E+ W+GRV R + E V AA AL+ AV EDFL + A
Sbjct: 509 FFERNEAIWRGRV-RPSVLTESDHVRTAARALAEAVVEDFLGVPRGDGPDGDGDGRPARA 567
Query: 503 APLGGPKGE-----ILYARE-HEAVWFKGKKFRPTVWASTPGEEQIKQLKPA-------V 549
A P + IL R+ +A+ G + A+ E + LK
Sbjct: 568 AGRKNPVAQDIFNNILGLRDPTQALVIMGMETSKKDKAADRDREDRETLKRKQERYFHPF 627
Query: 550 DSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL--QTKINILVFASM 607
D G+++ + ++T +V++AL Y A A+A+V +L GLS + + + ++ AS
Sbjct: 628 DRNGKRITTK-YTTERVQDALGAYVTACESARAEVERVLTGLSEAIVERGHLRTILQASH 686
Query: 608 LLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCL---KMNGLSPYWFDAAEGSAVHNT 664
L +I H S W + D G + + L+P+W D + V NT
Sbjct: 687 LNLILSTAARHASSSNAGGWNVGRIVDGGGGGEEASSAGRFDSLTPHWMD--RSACVANT 744
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP-AESASIPYFDAIMLHMKSYDS 723
D+ LFLLT PN GKS+L+RS AA LL GL P E + + FD++ L S D
Sbjct: 745 FDLDGLFLLTAPNMSGKSTLMRSAAAACLLVNSGLCAPVGEGSWVRRFDSLFLRGASADI 804
Query: 724 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 783
P +GKS+F EM+++ S++ ++T RSLV +DEI RGT GT +A +I+E + G G
Sbjct: 805 PTEGKSAFGAEMADLSSLLRSSTDRSLVFVDEIGRGTSPRDGTSLAAAILEHMSERGHSG 864
Query: 784 IVSTHLHGIFSLPLKIKNAA---YKAMG-TEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
+ +THLHGI +PL A K M E DG+ T+ L DG+C +SLA TA
Sbjct: 865 MFATHLHGILDMPLGDGARARLRRKRMAVAEDGDGRLRWTYHLEDGVCVDSLALLTAATF 924
Query: 840 GVPETIIQRA--------EDLYIACGVNCVMIAAREQ----------------------- 868
G+P+ I++RA D ++ V +AA E
Sbjct: 925 GLPDAILERAGQFSQCWSHDSGLSADVPGNTVAAAEPLDESTAPIVDTERTQASTTLEDA 984
Query: 869 ---------------------PPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHR-- 905
PPS+ G+SCVY+ ++ ++ Y+G+T+ + R+ HR
Sbjct: 985 AFILEDVVGSGTSVHIPQSYLSPPSLEGSSCVYI-IKAGRRYYVGETESISRRLAQHRSK 1043
Query: 906 GKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKH 952
G E S + + V GKS A IE+ +I L +GF L ++ADG
Sbjct: 1044 GDEWSSSTAVVMKVDGGKSRALNIESRVIRALAKRGFDLISVADGSQ 1090
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 25/174 (14%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDD 111
K++ P VLL RVGDFYE+ G+DA +LVE+ GLN G +AGCP N++ T+D
Sbjct: 28 KARHPDAVLLVRVGDFYESYGVDAVMLVEHCGLNSMAGR-----ARAGCPWGNVQATVDG 82
Query: 112 LTRNGYSVCIVEEV---QGPTQARSRKSRFISGHAHPGSP-YVFGLV------------- 154
LT G V + EE P R K R++S +P Y+ GLV
Sbjct: 83 LTSAGLRVAVYEERPWGSDPGSKRRMKERYLSQVVSSANPTYMHGLVLGDDGGDRGGGGA 142
Query: 155 --GIDHDLDFPEP-MPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKL 205
H+ P +GV +A+GY ++ + ++ + + LT +A+ +L
Sbjct: 143 TDDARHEDSSTSPGRSYVGVLETAQGYTLVEVSAEERSAVVSERLTAEAVSCRL 196
>gi|422293611|gb|EKU20911.1| dna mismatch repair protein [Nannochloropsis gaditana CCMP526]
Length = 1062
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 174/594 (29%), Positives = 268/594 (45%), Gaps = 138/594 (23%)
Query: 447 NIPSEFFEDMESTWKGRVKRIH---IEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTA 503
+P+ FFE E T++ V+ H +EP A V+ +A AL AV +DF P T
Sbjct: 515 TVPAVFFERNEETFRNTVRPTHPLVLEP-FARVKESAAALCRAVAQDFDP---GADVTVD 570
Query: 504 PLGGPKGEILYAREHEAVWFKGK-KFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFS 562
PL + ++ A F+ R +T E + P + RK ++
Sbjct: 571 PLN----NAVMMKKIPAPSFRSPLSPRGPSPTATSTETSTGYIHPT--DRHRKPLSSRYT 624
Query: 563 TLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEG 622
T++VE AL Y +A +A V L+ LSS L++ + L+ A+ + V+ +A AHV+
Sbjct: 625 TVRVETALNDYLQACGQATVAVRRALQSLSSTLRSDLPTLITATHMAVVLQAAAAHVAAA 684
Query: 623 RRRKWVFPAL---KDIELDGANC---------------------------LKMNGLSPYW 652
+++ W P L D + DG +++ L+PYW
Sbjct: 685 KQKGWTLPTLLSFSDSDCDGKEGDRGLSPSTPAVTPASHPLGPPSRPSWRMRLPNLTPYW 744
Query: 653 FDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA--------- 703
G V ++VD+ LFLLT PN GKS+L+RSI A+LLG GL VP
Sbjct: 745 LSRNSG-GVSSSVDLDGLFLLTAPNMSGKSTLMRSIAVAALLGNAGLFVPCMTGKEGFED 803
Query: 704 --------------------------ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 737
+S IP FD + L SYD P++GKS+F +EM +
Sbjct: 804 VREGGGQGGLCGKRRKFQEGGPGAGRKSVVIPRFDHLFLRTASYDVPSEGKSAFALEMDD 863
Query: 738 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797
+R ++ +TSRSLV +DE+ +GT +G ++G++IE LD + GI +THLH IF LPL
Sbjct: 864 VRVLLRDSTSRSLVFLDELGKGTSAREGAALSGALIEALDAVPVTGIFATHLHEIFDLPL 923
Query: 798 KIKN-AAYKAMG---TEYLDGQTVP-------TWKLVDGICRESLAFETAKREGVPETII 846
+ + +K MG G+ P T++L DG C +S+A+ TA++ G+PETI+
Sbjct: 924 QTSDRVRWKRMGFEEDVVEGGEEGPQERRVRWTYQLEDGRCLDSMAWYTARKFGIPETIL 983
Query: 847 QRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIR---- 902
RA+ +G+ D R R
Sbjct: 984 ARAQ---------------------------------------VLGKEFDASARQRLAQH 1004
Query: 903 --AHRGKEGMQSASF--LYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKH 952
H+ K + + L+ V K+ A +E L+IN L +GF L++ ADG+
Sbjct: 1005 RATHKKKSRIPESDLEALFVPVASKTEARNLEALVINALARRGFPLSSEADGRR 1058
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 182/356 (51%), Gaps = 30/356 (8%)
Query: 9 MCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFY 68
M ++P+ LV+++ +N LG D S + GTL +L K P +V+L RVG+FY
Sbjct: 1 MLQRPAARALVSQILPTNPLGFDAG-PTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFY 59
Query: 69 EAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGP 128
E G+DA +LVEYAGLNP G + KAGCPV N++ TLD LT G +V ++EE+
Sbjct: 60 ETYGVDAIMLVEYAGLNPMG-----NKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDL 114
Query: 129 TQARSR----KSRFISGHAHPG-SPYVFGLVGIDHDLDFPEPMPVIG-VSRSAKGYCIIS 182
A R KSR +S PG S Y++ D+++PE P +G ++ + GY ++
Sbjct: 115 DSASPRTSKLKSRLLSQIVSPGASTYLYDCCLRPDDVEYPENRPFLGLLNLPSNGYTLVE 174
Query: 183 ILETMKTYSLEDGLTEDA-----LVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGL 237
+ +T + +GLTE+ L + Y LR G G E
Sbjct: 175 VHVDAQTARITEGLTEEGVKMMLLAGGMAEPLYTQAVNRGLLRVLLPG----GGEVERRE 230
Query: 238 LWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIG 297
L+G +R F +++ L + E+ L ++V R V +RPRP+ L TA QIG
Sbjct: 231 LFGHVDSRSFY----QALVQALGRDLEIEALADQVHVR-VAPPLHSRPRPIPLATALQIG 285
Query: 298 AIPTEGIPCLLKVLLPSNCSGLPIL----YVRDLLLNPPAYEIASTIQAICKLMSK 349
+ +P L+ LLP++ L + ++R LL PP Y +A +QA+C+ +++
Sbjct: 286 LVANPAVPDLVPHLLPAHALPLLRVHSSRFLRRWLLTPPPYHLADAMQALCRHLAR 341
>gi|399218012|emb|CCF74899.1| unnamed protein product [Babesia microti strain RI]
Length = 1079
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 242/979 (24%), Positives = 398/979 (40%), Gaps = 172/979 (17%)
Query: 48 MLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQ 107
LQ K K+P ++LCR+G FYEA G+DA +L+E+AG + PKAG P L+
Sbjct: 87 FLQAKEKYPNCLILCRIGTFYEAFGVDALLLIEHAG----------NRPKAGLPRSRLQA 136
Query: 108 TLDDLTRNGYSVCIVEEVQ--GPTQARSRKSRFISGHAHPGSP-YVFGLVGID-HDLDFP 163
L+ +T GYS+ I EE G +RK F S P +P Y+ L + +D+
Sbjct: 137 ALNRMTALGYSIAIFEEASYLGDPGKNTRKRTF-SQIVSPENPVYLPHLEALSKNDIVLE 195
Query: 164 EPMPVIGVSRSAK-GYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQN 222
P++ VS+SA G+ + I + + R Y +L L T+
Sbjct: 196 NMPPIVAVSQSASDGFSVSQIF-----------------LGQRRVLHYSNLTLETAASMV 238
Query: 223 TSGTSRW----GEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVT 278
+ ++ G G L C + + P +E+ + L + +F +
Sbjct: 239 DTSMTKLVLIQGSNLNVGKLISRCNVANTQVLHVCP-LEITHTLIILRNGHDSKSFHDAA 297
Query: 279 VS-----------YENRPR--------PLHLGTATQIGAIPTEGIPC------LLKVLLP 313
+S ++ + PL TATQ+G + G L +++LP
Sbjct: 298 LSAVMTRLCITKPFQKFAKKLIAGQMFPLSYSTATQLGLVKHSGSQNMELYHKLHEMVLP 357
Query: 314 SNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCLVK-----LLELRE 368
+++ L+LNPP +I ++I+ + KL+S + LV LLE +
Sbjct: 358 KGTPQYCCNFIKLLMLNPPPVDICNSIRVVTKLLSARKDCVQFVRPLVMEKCHLLLESGK 417
Query: 369 ANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRI 428
AN + I++ L LH DP ++ LKI E R + +
Sbjct: 418 ANRTLYRDIRSNLKAFLHYIKT----------FDPDLLSNALKITAYETFTETRSSVLAA 467
Query: 429 GEMISLDG--------ESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAA 480
LD ES I I +FE E T++G VKR IE V+ A
Sbjct: 468 SAKKCLDAIESTVECDESPVLIPRTIPILDSYFEGQE-TFRGIVKRKRIEEIYRLVDTHA 526
Query: 481 EALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEE 540
L L + + + +R+ + RE + + F + R T GE
Sbjct: 527 YRLILKIISE---MTNRVLDHKIEDRAGISKEFEDREKDWIRFLIENLR------TSGEM 577
Query: 541 -QIKQLKPAVD-SKGRKVGEEWFSTLK-------VEEALERYHEAGAKAKAKVLELLRGL 591
K+ P VD S+ ++ + +K VE A Y A +A+ KV +++ L
Sbjct: 578 IYTKKHAPGVDTSRFIQLKNVYSRAIKGAKTTKLVEAANMDYLVAAREAREKVTDIMIDL 637
Query: 592 SSELQTKINILVFASMLLVIGKALFAHVSEGRRRKW--VFPALKDIELDGANCLKMNGLS 649
S+ + + +L S ++ + L H S W + P+++ E + +
Sbjct: 638 SNSMIPFLPLLHTVSYFNLLIQTLTLHASHALACNWSLIKPSVRR-EGGIRRVFYLENFN 696
Query: 650 PYWFDAAEGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707
P++ ++ N +D+ Q + LL+G N GKS++ RS+ A ++L GL P + S
Sbjct: 697 PFYTNS-------NGLDITIQGVVLLSGSNMAGKSTICRSVLAIAILSNLGLYCPCGTKS 749
Query: 708 I-PYFDAIMLHMK-SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKG 765
I P FD+I +YD P GKS ++ +I IV T +LV+ DE C+G+
Sbjct: 750 IIPRFDSISATSSIAYDVPTSGKSLHVQQLEDIGGIVAGATENALVVADEPCKGSTPKSS 809
Query: 766 TCIAGSIIETLDNIGCLGIVSTH-LHGIFSLPLKIKNA-AYKAMGTEYLDGQTVPTW--K 821
+ S+ E L N+G I+STH L I SLPL+ Y A + P W +
Sbjct: 810 AALTASVAEHLSNLGAFAIISTHLLDEISSLPLETDGTIEYYAARAVNMGSDVCPRWYYQ 869
Query: 822 LVDGICRESLAFETAKREGVPETIIQRAEDLYIAC------------------------- 856
L+ G S + A+ G+ +IIQRA +
Sbjct: 870 LLPGRGEGSGSIRAAELAGLDNSIIQRARKFEVCLMGGETTKNGGETAKDRRETAKDRCY 929
Query: 857 ---------------GVNCVMIAAREQPPPSIIGASCVYVMLRP--------DKKLYIGQ 893
++ ++ E PPPS +Y ++ P + LYIG+
Sbjct: 930 HLKTVTHVIKSILGDSMDMCVVENDEIPPPSFSRRPVLYALVLPVFSGQTLLNHALYIGE 989
Query: 894 TDDLDGRIRAHRGKEGMQS 912
+ ++ R+R H K+G+Q+
Sbjct: 990 SGNVGTRLRQHY-KKGIQT 1007
>gi|422295474|gb|EKU22773.1| dna mismatch repair protein, partial [Nannochloropsis gaditana
CCMP526]
Length = 287
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 134/247 (54%), Gaps = 46/247 (18%)
Query: 660 AVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA---------------- 703
V ++VD+ LFLLT PN GKS+L+RSI A+LLG GL VP
Sbjct: 23 GVSSSVDLDGLFLLTAPNMSGKSTLMRSIAVAALLGNAGLFVPCMTGKEGFEDVREGGGQ 82
Query: 704 -------------------ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 744
+S IP FD + L SYD P++GKS+F +EM ++R ++
Sbjct: 83 GGLCGKRRKFQEGGPGAGRKSVVIPRFDHLFLRTASYDVPSEGKSAFALEMDDVRVLLRD 142
Query: 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN-AA 803
+TSRSLV +DE+ +GT +G ++G++IE LD + GI +THLH IF LPL+ +
Sbjct: 143 STSRSLVFLDELGKGTSAREGAALSGALIEALDAVPVTGIFATHLHEIFDLPLQTSDRVR 202
Query: 804 YKAMGTEYL----------DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY 853
+K MG E + + T++L DG C +S+A+ TA++ G+PETI+ RA+ L
Sbjct: 203 WKRMGFEEDVVEGGEEGPQERRVRWTYQLEDGRCLDSMAWYTARKFGIPETILARAQVLG 262
Query: 854 IACGVNC 860
+C
Sbjct: 263 KEFDASC 269
>gi|269859802|ref|XP_002649625.1| DNA mismatch repair protein Msh6 [Enterocytozoon bieneusi H348]
gi|220066988|gb|EED44457.1| DNA mismatch repair protein Msh6 [Enterocytozoon bieneusi H348]
Length = 894
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 116/222 (52%), Gaps = 16/222 (7%)
Query: 644 KMNGLSPYWFDAAEGSAVHNTVD-------------MQSLFLLTGPNGGGKSSLLRSICA 690
K+ P + D+ +G + N V+ S+ +LTGPN GGKS+ LRS+C
Sbjct: 671 KIEFCRPTFIDSTDGIEIINVVNPIFENYITNDFVPSHSISILTGPNMGGKSTFLRSLCL 730
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
+L GL V A+ +P FD I + + DS +S+F VEM+E I+ T RS
Sbjct: 731 NIILCQMGLHVAAKKFCVPVFDNIFTRIGANDSLLKNESTFMVEMNECSKILNTATRRSF 790
Query: 751 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 810
V+IDE+ RGT GT IA S+++ L IGC + STH H L + + +M +
Sbjct: 791 VIIDELGRGTSIRDGTAIAESVLKYLQTIGCFVLFSTHYH---VLANQFQEVDKYSMAYD 847
Query: 811 YLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
++ Q V +KL GI S AK GVPE I+QRAE++
Sbjct: 848 LINNQIVFKYKLSSGIVDNSYGIYVAKLAGVPEKILQRAEEI 889
>gi|298707771|emb|CBJ26088.1| MutS protein homolog 1A [Ectocarpus siliculosus]
Length = 374
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 112/202 (55%), Gaps = 5/202 (2%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFA--SMLLVIGKALFAH 618
F+T +V AL Y A + K V L+ LS + T ++ V A + VI +A+ H
Sbjct: 132 FTTERVSTALSGYLTAIEETKTAVQSQLQALSDSIVTNNDLPVIAQAAHWSVICQAMEGH 191
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNG 678
V W P+LKD+ + +K+ L PYW E AV N+ D LFLLT PN
Sbjct: 192 VRHALSSGWSLPSLKDLN-NPDMSMKVENLVPYWLPRQE--AVPNSFDFGGLFLLTAPNM 248
Query: 679 GGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEI 738
GKS+L+R++ A SLL GL P SA +P FD L SYD PA+ KS+F +EM ++
Sbjct: 249 SGKSTLMRAVLACSLLSNAGLFAPCTSAVVPRFDCFFLRTASYDIPAEDKSAFALEMDDV 308
Query: 739 RSIVTATTSRSLVLIDEICRGT 760
R ++ ++ RSL L+DE+ +GT
Sbjct: 309 RVMLRDSSDRSLALVDELGKGT 330
>gi|148657805|ref|YP_001278010.1| DNA mismatch repair protein MutS [Roseiflexus sp. RS-1]
gi|189083188|sp|A5UZK7.1|MUTS_ROSS1 RecName: Full=DNA mismatch repair protein MutS
gi|148569915|gb|ABQ92060.1| DNA mismatch repair protein MutS [Roseiflexus sp. RS-1]
Length = 1085
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 39/396 (9%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN-----ILVFASMLLV 610
GE +F+ + L+RY E +A+ ++++L R + + + +L A M+
Sbjct: 694 TGERYFT-----DELKRYEEIVEQAQQRLIDLERRAFARICDVVTGAGARLLRTARMIAT 748
Query: 611 IGKALFAHVSEGR-RRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS 669
I +FA ++E R ++V P L D + G P + + V N ++M +
Sbjct: 749 ID--VFAALAEAAVRGRYVRPEL----YDDTRLRIVGGRHPVVEQTLDETFVPNDIEMDT 802
Query: 670 ----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ L+TGPN GKS++LR + +L+ G VPA++A I D I + + D A
Sbjct: 803 ETRQICLITGPNMSGKSTVLRQVALIALMAQIGSFVPADAAEIGLVDRIFTRIGAQDDIA 862
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCL 782
G+S+F VEM+E +++ +T RSL+++DE+ RGT T G IA ++IE + N +GC
Sbjct: 863 TGRSTFMVEMTETAALLAQSTRRSLIILDEVGRGTSTYDGMAIAQAVIEYIHNEPRLGCR 922
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L + M DG+ V +L G S A+ G+P
Sbjct: 923 TLFATHYHELTDLERTLPRLKNYHMAATEQDGRVVFLHELRPGGADRSYGIHVAELAGIP 982
Query: 843 ETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLD-GRI 901
+++I+RA +L A R PP V R D + G+ G
Sbjct: 983 QSVIRRASELL----AELERRAPRSAPP---------TVPARGDDRRSAGRASSSGAGAA 1029
Query: 902 RAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQL 937
R +G+ L+ + PG I + + INQL
Sbjct: 1030 RGEQGRTLPDGQLSLFDLAPGPVIEM-LRRIDINQL 1064
>gi|396082264|gb|AFN83874.1| MutS-like DNA mismatch repair protein [Encephalitozoon romaleae
SJ-2008]
Length = 914
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 108/193 (55%), Gaps = 4/193 (2%)
Query: 661 VHNTVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N D Q + +LTG N GGKS+LLR+IC +L G+ V E P FD I +
Sbjct: 718 VANDYDAQKRILVLTGANMGGKSTLLRTICFNVILSQMGMDVCCEKMETPLFDRIFTRIG 777
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D+ A G+S+F VE+ E +I+ +T SLV++DE+ RGT T G CIA ++IE L
Sbjct: 778 ARDNLAKGESTFMVELKETATILKHSTRNSLVIMDELGRGTSTKDGECIARAVIEYLKRK 837
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C + STH HGI ++ + MG+ V ++L+ G+ R+S A+
Sbjct: 838 ECHVLFSTHYHGIIE---NVEGVSNGYMGSVVKGKDIVFLYRLMSGVSRDSHGLYVARMA 894
Query: 840 GVPETIIQRAEDL 852
GVPE I++RAE +
Sbjct: 895 GVPEDIVERAEKI 907
>gi|354582777|ref|ZP_09001678.1| DNA mismatch repair protein MutS [Paenibacillus lactis 154]
gi|353199069|gb|EHB64535.1| DNA mismatch repair protein MutS [Paenibacillus lactis 154]
Length = 934
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 148/284 (52%), Gaps = 20/284 (7%)
Query: 579 KAKAKVLELLRGLSSELQTKINILVFASMLLV-------IGKALFAHVSEGRRRKWVFPA 631
+A+ K+++L L +EL+ K+N+ V L + ++L A +E R +V P
Sbjct: 510 EAQEKMVDLEYALFTELRDKLNMQVSRLQKLAERIAEMDVYQSLAAVSAEHR---FVKPE 566
Query: 632 LKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDMQ----SLFLLTGPNGGGKSSLLR 686
L D G + + G P + SA + N +++ S+ L+TGPN GKS+ +R
Sbjct: 567 LSD----GYDYIVEGGRHPVVEAVMKDSAFIANGTELRKEGSSILLITGPNMAGKSTYMR 622
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ S+L G VPAE A IP D I + + D G+S+F VEM++I+ + T
Sbjct: 623 QVALLSILAQIGCFVPAERAVIPLVDRIFTRIGAADDLIGGQSTFMVEMADIQVMTEKAT 682
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
RSL++IDE+ RGT T++G IA ++IE + D+IGC +VSTH H + L +K +
Sbjct: 683 PRSLIIIDELGRGTSTSEGMAIAQAVIEYVHDHIGCKALVSTHFHELAHLQESLKGLSNY 742
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+M + + KL+ G S A+ G+P +II RA
Sbjct: 743 SMAVQESGDKVHFLRKLIPGAADSSYGIYCARLAGLPGSIIDRA 786
>gi|156083216|ref|XP_001609092.1| DNA repair protein [Babesia bovis T2Bo]
gi|154796342|gb|EDO05524.1| DNA repair protein, putative [Babesia bovis]
Length = 1313
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q L LLTGPN GGKS+LLR + ++ G VP + D + + +YD+
Sbjct: 1082 DYQPLILLTGPNMGGKSTLLRQVALCVIMAQMGSFVPGSECKMTVVDRVFTRLGAYDNII 1141
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 785
GKS+F +EM E +I+ + T SLVL+DE+ RGT T + T IA + +E L IGC G+
Sbjct: 1142 QGKSTFLIEMEEASTILHSATRDSLVLVDELGRGTSTFEATAIAAACLEKLSAIGCRGVF 1201
Query: 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT--WKLVDGICRESLAFETAKREGVPE 843
+TH H ++S K+ N + M D + T +KL G+C ES A+ G+P+
Sbjct: 1202 TTHFHEVWSYAKKLDNVSLCHMAASLDDKEKSITFLYKLSLGLCPESHGIHVARLAGIPK 1261
Query: 844 TIIQRAE 850
+ AE
Sbjct: 1262 HVTDMAE 1268
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 58 EVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGY 117
++L ++G FYE DACI+ + GL G E+ P G P +L +GY
Sbjct: 404 QLLFFKMGRFYELFYHDACIVQQICGLRWMGS---EAKPHVGFPEKSLHIYASSCVDHGY 460
Query: 118 SVCIVEEVQGPTQARSRK 135
V +VE+ + P Q R
Sbjct: 461 KVVVVEQTETPQQLEQRN 478
>gi|401827705|ref|XP_003888145.1| MutS-like mismatch repair ATPase [Encephalitozoon hellem ATCC
50504]
gi|392999345|gb|AFM99164.1| MutS-like mismatch repair ATPase [Encephalitozoon hellem ATCC
50504]
Length = 918
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 109/191 (57%), Gaps = 4/191 (2%)
Query: 661 VHNTVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N D Q + +LTG N GGKS+LLR+IC +L G+ V E P FD I +
Sbjct: 722 VANDYDAQKRILVLTGANMGGKSTLLRTICLNVILSQVGMDVCCERMETPLFDRIFTRIG 781
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D+ A G+S+F VE++E +I+ +T SLV++DE+ RGT T G CIA +++E L
Sbjct: 782 ARDNLAKGESTFMVELAETATILKHSTRDSLVMMDELGRGTSTKDGECIARAVLEYLKQK 841
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C + STH HGI +++ + MG+ V +KL+ GI R+S A+
Sbjct: 842 ECHVLFSTHYHGIIE---EVEGVSNGYMGSVVKGKDIVFLYKLMSGISRDSHGLYVARMA 898
Query: 840 GVPETIIQRAE 850
GVPE ++++AE
Sbjct: 899 GVPEAVVRKAE 909
>gi|87122440|ref|ZP_01078320.1| DNA mismatch repair protein MutS [Marinomonas sp. MED121]
gi|86162233|gb|EAQ63518.1| DNA mismatch repair protein MutS [Marinomonas sp. MED121]
Length = 868
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 153/296 (51%), Gaps = 26/296 (8%)
Query: 567 EEALERYHEAGAKAKAKVLELLRGLSSEL---QTKINILVFASMLLVIGKALFAHVSEGR 623
++AL +A A+ K +LL ++ EL QT N L +L A FA +E
Sbjct: 516 DKALSAKSKALAREKHLYEQLLGTINEELIALQTSSNALSELDVL-----ANFAERAE-- 568
Query: 624 RRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPN 677
R ++V P ++D IE+ + G P + N + M +SL ++TGPN
Sbjct: 569 RHRYVRPVIEDKPGIEI-------LEGRHPVVESVITEPFIPNDLIMSPERSLLMITGPN 621
Query: 678 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 737
GGKS+ +R I +LL G VPAE+A++ D I M S D A G+S+F VEM+E
Sbjct: 622 MGGKSTYMRQIALITLLAHTGCFVPAEAANLSLVDRIFTRMGSSDDLAGGRSTFMVEMTE 681
Query: 738 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLP 796
+I+ T +SLVL+DE+ RGT T G +A S ++ L N + C + +TH + L
Sbjct: 682 TANILNNATPKSLVLMDEVGRGTSTFDGLSLAWSAVDHLANQVKCNVLFATHYFELTLLA 741
Query: 797 LKIKNAAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
++KNAA + TEY D V K+ DG +S + A+ GVP +IQ A+D
Sbjct: 742 DELKNAANVHLTATEYEDS-IVFLHKVHDGAASQSYGLQVAQLAGVPRDVIQAAKD 796
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQT 108
KS+ P E+L R+GDFYE DA L G + IP AG P
Sbjct: 19 LKSQHPNELLFYRMGDFYEIFYDDAKKAAHLLDITLTSRGHSGGQPIPMAGIPYHAAENY 78
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L R G SV + E+V P ++ R ++ PG+
Sbjct: 79 IARLVRMGESVVVCEQVGDPATSKGPVERQVARIVTPGT 117
>gi|402817014|ref|ZP_10866603.1| DNA mismatch repair protein MutS [Paenibacillus alvei DSM 29]
gi|402505120|gb|EJW15646.1| DNA mismatch repair protein MutS [Paenibacillus alvei DSM 29]
Length = 915
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++ L+TGPN GKS+ +R + S++ G VPAE AS+P D I + + D G+
Sbjct: 594 TMLLITGPNMAGKSTYMRQVALISIMAQIGCFVPAERASMPIVDRIFTRIGAADDLIGGQ 653
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVST 787
S+F VEM +I+ + T RSLV+IDE+ RGT T++G IA +++E + N IGC +VST
Sbjct: 654 STFMVEMMDIQVMTEKATRRSLVIIDELGRGTSTSEGMSIAQAVVEYVHNRIGCKALVST 713
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + + +++ M + Q KLV G S A+ G+P+ II
Sbjct: 714 HFHELAHMADRLQRLKNVCMAVQESGNQVTFLRKLVSGAASTSYGIYCARLAGLPDQIID 773
Query: 848 RAEDL 852
RA DL
Sbjct: 774 RAYDL 778
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL-----VEYAGLNPFGGLRPESIPKAGCP 101
+ L K + L R+GDFYE DA + + G G + IP G P
Sbjct: 10 QYLSIKEQVKDAFLFFRLGDFYEMFFDDAILASKELEITLTGRGSSGA--EDRIPMCGVP 67
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L GY V I E+V+ P A+ R I PG+
Sbjct: 68 YHSADNYIQRLIEKGYKVAICEQVEDPATAKGVVRREIVRIVTPGT 113
>gi|281204299|gb|EFA78495.1| DNA mismatch repair protein [Polysphondylium pallidum PN500]
Length = 946
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 108/185 (58%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L+L+TGPN GGKS+ LR S++ G VPA+ A + D+I + S D A+ +S
Sbjct: 756 LWLITGPNMGGKSTFLRQNALISIMSQIGSFVPADRAEVGIMDSIFSRVGSSDDLANDRS 815
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789
+F VEM E SI+ T RS V++DE+ RGT T G IA SIIE L++I C + +TH
Sbjct: 816 TFMVEMIETASILKKATQRSFVIMDEVGRGTATLDGLAIAQSIIEYLESIKCRTLFATHY 875
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + L +K A+ + +G+ + T K++ G+ +S A+ G+P TII+RA
Sbjct: 876 HELTKLATVMKKIKCHALAVKEENGELLFTHKIMPGVSNKSYGIFCAQLAGMPPTIIKRA 935
Query: 850 EDLYI 854
++L +
Sbjct: 936 KELLL 940
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 48 MLQ---FKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN-PFGGLRP--ESIPKAGCP 101
MLQ FK K+P+ +LL R+GDFYE DA + + G++ IP G P
Sbjct: 108 MLQYHHFKQKYPKHILLFRIGDFYEMFYDDAKEVSSLLHITLTTRGIKSTKNEIPMCGFP 167
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 137
++ L R+G +V + ++V+ +SR R
Sbjct: 168 QHAAETYIEKLIRHGKTVAVCDQVED---VKSRSGR 200
>gi|420147621|ref|ZP_14654896.1| DNA mismatch repair protein MutS [Lactobacillus gasseri CECT 5714]
gi|398400768|gb|EJN54299.1| DNA mismatch repair protein MutS [Lactobacillus gasseri CECT 5714]
Length = 857
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P D ++D +NG P GS + N V M +F
Sbjct: 550 FATVSE--QNNYVRP---DFKVDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTDIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGCFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREA 783
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>gi|315646575|ref|ZP_07899693.1| DNA mismatch repair protein MutS [Paenibacillus vortex V453]
gi|315278218|gb|EFU41538.1| DNA mismatch repair protein MutS [Paenibacillus vortex V453]
Length = 924
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 145/284 (51%), Gaps = 20/284 (7%)
Query: 579 KAKAKVLELLRGLSSELQTKINILVFASMLLV-------IGKALFAHVSEGRRRKWVFPA 631
+A+ K+++L L +EL+ K+N V L + ++L A +E R +V P
Sbjct: 510 EAQEKMVDLEYALFTELRDKLNTQVSRLQKLAERIAEIDVYQSLAAVSAEYR---FVKPE 566
Query: 632 LKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDMQ----SLFLLTGPNGGGKSSLLR 686
L D G + + G P + SA + N D++ S+ L+TGPN GKS+ +R
Sbjct: 567 LSD----GYDYIVEGGRHPVVESVMKDSAFIANGTDLRKDGSSILLITGPNMAGKSTYMR 622
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ S+L G VPAE A IP D I + + D G+S+F VEM++I+ + T
Sbjct: 623 QVALLSILAQLGCFVPAERAVIPLVDRIFTRIGAADDLIGGQSTFMVEMADIQVMTEKAT 682
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
RSL++IDE+ RGT T++G IA ++IE + D+IGC +VSTH H + L +
Sbjct: 683 PRSLIIIDELGRGTSTSEGMAIAQAVIEYVHDHIGCKALVSTHFHELAHLQESLGGLKNY 742
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+M + + KL+ G S A+ G+P +II RA
Sbjct: 743 SMAVQESGDKVHFLRKLIPGAADSSYGIYCARLAGLPGSIIDRA 786
>gi|156743470|ref|YP_001433599.1| DNA mismatch repair protein MutS [Roseiflexus castenholzii DSM 13941]
gi|189083187|sp|A7NPT5.1|MUTS_ROSCS RecName: Full=DNA mismatch repair protein MutS
gi|156234798|gb|ABU59581.1| DNA mismatch repair protein MutS [Roseiflexus castenholzii DSM 13941]
Length = 1088
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 180/395 (45%), Gaps = 38/395 (9%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-----QTKINILVFASMLLV 610
GE +F+ + L+RY E +A+ ++++L R + + + +L A +
Sbjct: 698 TGERYFT-----DELKRYEEIVEQAQQRLIDLERRAFARICETLAGAGVRLLRTARTIAT 752
Query: 611 IGKALFAHVSEGR-RRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS 669
I +FA ++E R ++V P L D + G P + + + N ++M +
Sbjct: 753 ID--VFAALAEAAVRGRYVRPEL----YDDTRLRIIGGRHPVVEQTLDETFIPNDIEMDT 806
Query: 670 ----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ L+TGPN GKS++LR + +L+ G VPA++A I D I + + D A
Sbjct: 807 ETRQICLITGPNMSGKSTVLRQVALIALMAQIGSFVPADAAEIGVVDRIFTRIGAQDDIA 866
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCL 782
G+S+F VEM+E +++ +T RSL+++DE+ RGT T G IA ++IE + N +GC
Sbjct: 867 TGRSTFMVEMTETAALLAQSTHRSLIILDEVGRGTSTYDGMAIAQAVIEYIHNEPRLGCR 926
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L + M DG+ V +L G S A+ G+P
Sbjct: 927 TLFATHYHELTDLERTLPRLKNYHMAATEQDGRVVFLHELRPGGADRSYGIHVAELAGIP 986
Query: 843 ETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIR 902
+ +I+RA +L A R P P+ RP + + D
Sbjct: 987 QPVIRRATELL----AELERRAPRSTPQPAPERTEERPAAGRPTARSHSAARGD------ 1036
Query: 903 AHRGKEGMQSASFLYFVVPGKSIACQIETLLINQL 937
R +G S L+ + PG I + L INQL
Sbjct: 1037 PPRAPDGQLS---LFDLTPGPVIEM-LRRLDINQL 1067
>gi|46580059|ref|YP_010867.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris str.
Hildenborough]
gi|387153497|ref|YP_005702433.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris RCH1]
gi|48428287|sp|P61666.1|MUTS_DESVH RecName: Full=DNA mismatch repair protein MutS
gi|46449475|gb|AAS96126.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233941|gb|ADP86795.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris RCH1]
Length = 905
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 151/305 (49%), Gaps = 19/305 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-QTKINILVFASML--LVIGKAL 615
E F+T +++E E+ A + K L + L + + + +L A ML L ++L
Sbjct: 522 ERFTTERLKELEEKLVSATDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDFWQSL 581
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSL 670
A V+ RR WV P + G + + G P +A +GSA V N + M + L
Sbjct: 582 -ADVA--RRNGWVRPDVHT----GHDIVIREGRHPV-VEAMQGSASFVPNDLRMDEKRRL 633
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS++LR LL G VPA ASI D I + + D+ A G+S+
Sbjct: 634 LLITGPNMAGKSTVLRQTAIICLLAQMGAFVPAREASIGIADRIFSRVGASDNLAQGQST 693
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI---VST 787
F VEM E I+ + RSLV++DEI RGT T G +A +++E L GI +T
Sbjct: 694 FMVEMMETARILRQASKRSLVILDEIGRGTSTFDGMALAWAVVEELTRRAGGGIRTLFAT 753
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H I SL +I + +G V +LV G +S E A+ GVP +++Q
Sbjct: 754 HYHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRLVPGPADKSYGIEVARLAGVPHSVVQ 813
Query: 848 RAEDL 852
RA +L
Sbjct: 814 RAREL 818
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDAC-----ILVEYAGLNPFG 88
+ N S K + + L+ K +P +L R+GDFYE DA + + NP
Sbjct: 1 MTNPSPKLTPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNA 60
Query: 89 GLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L+ P G P + + L GY V I E+++ P +A+ R ++ PG+
Sbjct: 61 ELK---APMCGVPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGT 116
>gi|116629083|ref|YP_814255.1| DNA mismatch repair protein MutS [Lactobacillus gasseri ATCC 33323]
gi|238853826|ref|ZP_04644191.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 202-4]
gi|282852792|ref|ZP_06262134.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 224-1]
gi|122273919|sp|Q045Q5.1|MUTS_LACGA RecName: Full=DNA mismatch repair protein MutS
gi|116094665|gb|ABJ59817.1| DNA mismatch repair protein MutS [Lactobacillus gasseri ATCC 33323]
gi|238833521|gb|EEQ25793.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 202-4]
gi|282556534|gb|EFB62154.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 224-1]
Length = 857
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P D +D +NG P GS + N V M +F
Sbjct: 550 FATVSE--QNNYVRP---DFTVDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTDIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGCFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREA 783
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>gi|120602482|ref|YP_966882.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris DP4]
gi|166232120|sp|A1VDD9.1|MUTS_DESVV RecName: Full=DNA mismatch repair protein MutS
gi|120562711|gb|ABM28455.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris DP4]
Length = 905
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 151/305 (49%), Gaps = 19/305 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-QTKINILVFASML--LVIGKAL 615
E F+T +++E E+ A + K L + L + + + +L A ML L ++L
Sbjct: 522 ERFTTERLKELEEKLVSATDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDFWQSL 581
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSL 670
A V+ RR WV P + G + + G P +A +GSA V N + M + L
Sbjct: 582 -ADVA--RRNGWVRPDVHT----GHDIVIREGRHPV-VEAMQGSASFVPNDLRMDEKRRL 633
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS++LR LL G VPA ASI D I + + D+ A G+S+
Sbjct: 634 LLITGPNMAGKSTVLRQTAIICLLAQMGAFVPAREASIGIADRIFSRVGASDNLAQGQST 693
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI---VST 787
F VEM E I+ + RSLV++DEI RGT T G +A +++E L GI +T
Sbjct: 694 FMVEMMETARILRQASKRSLVILDEIGRGTSTFDGMALAWAVVEELTRRAGGGIRTLFAT 753
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H I SL +I + +G V +LV G +S E A+ GVP +++Q
Sbjct: 754 HYHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRLVPGPADKSYGIEVARLAGVPHSVVQ 813
Query: 848 RAEDL 852
RA +L
Sbjct: 814 RAREL 818
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDAC-----ILVEYAGLNPFG 88
+ N S K + + L+ K +P +L R+GDFYE DA + + NP
Sbjct: 1 MTNPSPKLTPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNA 60
Query: 89 GLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L+ P G P + + L GY V I E+++ P +A+ R ++ PG+
Sbjct: 61 ELK---APMCGVPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGT 116
>gi|78357019|ref|YP_388468.1| DNA mismatch repair protein MutS [Desulfovibrio alaskensis G20]
gi|90109846|sp|Q30ZX3.1|MUTS_DESDG RecName: Full=DNA mismatch repair protein MutS
gi|78219424|gb|ABB38773.1| DNA mismatch repair protein MutS [Desulfovibrio alaskensis G20]
Length = 904
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 147/304 (48%), Gaps = 17/304 (5%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-QTKINILVFASMLLVIGKALFA 617
E +++ +++E E+ A K K L+L + L + Q + +L A +L + +
Sbjct: 522 ERYTSERLKELEEKLFSAADKRKTMELKLFQQLREHVAQARPRVLFMADLLATLDH--WQ 579
Query: 618 HVSEGRRR-KWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTV---DMQSLF 671
++E R WV P L D G + + G P +A +G A + N + D + L
Sbjct: 580 GLAEAARHWNWVRPVLHD----GQDIVIREGRHPV-VEAVQGPAGFIPNDLRIDDQRRLL 634
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS++LR +L G VPA A I D I + + D+ A G+S+F
Sbjct: 635 LITGPNMAGKSTVLRQAAIICILAQIGSFVPAREARIGLCDRIFSRVGASDNLAQGQSTF 694
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGIVSTH 788
VEM E I+ T RSLV++DEI RGT T G +A +++E L G + +TH
Sbjct: 695 MVEMMETARILRQATRRSLVILDEIGRGTSTFDGLALAWAVVEELMKKQQAGIRTLFATH 754
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL I + + G+ V +LV G S E AK GVP+ ++QR
Sbjct: 755 YHELTSLEGTIPGVHNMNIAIKEWGGEIVFLRRLVPGPSDRSYGVEVAKLAGVPQNVVQR 814
Query: 849 AEDL 852
A +
Sbjct: 815 ARQI 818
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL-----NPFGGLRPESIPKAGCP 101
+ + K+++P +L R+GDFYE DA + + NP +P G P
Sbjct: 14 QYMNIKAEYPDALLFYRMGDFYELFFEDAEVAARELQIALTCRNPNA---ENKVPMCGVP 70
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQAR 132
+ R + L GY V I E+++ P +A+
Sbjct: 71 HHSARSYISQLVDKGYKVAICEQMEDPREAK 101
>gi|325283795|ref|YP_004256336.1| DNA mismatch repair protein MutS [Deinococcus proteolyticus MRP]
gi|324315604|gb|ADY26719.1| DNA mismatch repair protein MutS [Deinococcus proteolyticus MRP]
Length = 863
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 127/255 (49%), Gaps = 18/255 (7%)
Query: 625 RKWVFPALKD---IELDGAN------CLKMNGLSPYWF--DAAEGSAVHNTVDMQSLFLL 673
R WV P L + ++L A L G + DAA G H LL
Sbjct: 586 RGWVRPVLDETGQLQLTQARHPVVEYALSQGGQGGSFVPNDAALGPGCHT-------LLL 638
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ LR++ A+LL G VPAESA++P +DAI + + D A G+S+F V
Sbjct: 639 TGPNMAGKSTYLRTVALAALLHQIGAFVPAESAALPVYDAIHTRIGASDDLAGGRSTFMV 698
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793
EM+E+ +I+ TS+SLV++DE+ RGT T G IA + +E L G + +TH +
Sbjct: 699 EMTELATILHGATSQSLVILDEVGRGTSTLDGLAIAQAALEHLHGCGAHTLFATHYFELT 758
Query: 794 SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY 853
L ++ + E G +++ G R+S E A+ G+P ++ R+ +L
Sbjct: 759 RLDAELPGLVNLHVAAEEAGGNLTFFHQVIPGAARQSYGVEVARLAGLPAQVVGRSAELL 818
Query: 854 IACGVNCVMIAAREQ 868
A V A R++
Sbjct: 819 AALSVQGDDRAIRQE 833
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN-PFGGLRPESIPKAGCPVVNLRQT 108
+ + +FP +LL +VGDFYE G DA GL + S P AG PV L
Sbjct: 45 EVQEEFPGALLLFQVGDFYETFGEDAERAARLLGLALTHKSSKDFSTPMAGVPVRTLDAQ 104
Query: 109 LDDLTRNGYSVCIVEEVQGP 128
++ L G V + ++V+ P
Sbjct: 105 IEKLLGQGVRVAVADQVEEP 124
>gi|205373496|ref|ZP_03226299.1| DNA mismatch repair protein [Bacillus coahuilensis m4-4]
Length = 867
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 7/187 (3%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L L+TGPN GKS+ +R + S+L G VPA SA++P FD I + + D G+S
Sbjct: 601 LLLITGPNMSGKSTYMRQVALTSILAQIGCYVPATSANLPIFDQIFTRIGAADDLISGQS 660
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E R+ +T T SL+L DEI RGT T G +A +IIE + +NIGC + STH
Sbjct: 661 TFMVEMLEARNAITYATENSLILFDEIGRGTSTYDGMALAQAIIEYIHENIGCKTLFSTH 720
Query: 789 LHGIFSLPLK---IKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
H + L K ++N AM +G+ V K+ +G +S A+ +PE++
Sbjct: 721 YHELTVLEEKLSMLQNVHVSAMEH---NGKVVFLHKIKEGPADKSYGIHVAELANLPESL 777
Query: 846 IQRAEDL 852
I+RA++L
Sbjct: 778 IKRAKEL 784
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVE--YAGLNPFGGLRPESIPKAGCPVVN 104
+ LQ K+ + L R+GDFYE DA + L G + IP G P +
Sbjct: 10 QYLQVKADYQDAFLFFRLGDFYEMFFDDAIKASQELEITLTSRNGGDEDRIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + G+ V I E+ + P A+ R + PG+
Sbjct: 70 APNYIEQLVQKGFKVAICEQTEDPKLAKGVVKREVVQLITPGT 112
>gi|15614932|ref|NP_243235.1| DNA mismatch repair protein MutS [Bacillus halodurans C-125]
gi|20139216|sp|Q9KAC0.1|MUTS_BACHD RecName: Full=DNA mismatch repair protein MutS
gi|10174989|dbj|BAB06088.1| DNA mismatch repair protein (mismatch recognition step) [Bacillus
halodurans C-125]
Length = 865
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 11/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE +V PAL++ D A +K G P G V N VDM+ S+
Sbjct: 548 FATVSETHH--YVRPALQE---DRAIAIK-GGRHPVVERVIPNGEYVANDVDMKDGRSIL 601
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++G G VPA+ A +P FD + + + D A G+S+F
Sbjct: 602 LITGPNMAGKSTYMRQLALIAIMGQIGCFVPADEARLPIFDQVFTRIGAADDLASGQSTF 661
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + + T SL+L+DEI RGT T G +A +IIE + D I + STH H
Sbjct: 662 MVEMLETKYALQKATQNSLILLDEIGRGTSTYDGMALAQAIIEYIHDEIRAKTLFSTHYH 721
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L ++ + + G V K+VDG S A+ G+P + +RAE
Sbjct: 722 ELTALEKELSDVKNVHVSAVEEQGTVVFLHKVVDGQADRSYGIYVAELAGLPNVVTERAE 781
Query: 851 DL 852
L
Sbjct: 782 TL 783
Score = 46.2 bits (108), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GLRPESIPKAGCPVVNL 105
+ L+ K+++ L R+GDFYE DA + + G G E IP G P +
Sbjct: 10 QYLEIKAQYKDAFLFFRLGDFYELFLDDAVKAAQELEITLTGRGKGEERIPMCGVPYHSA 69
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY + I E+V+ P A+ R + PG+
Sbjct: 70 DHYISRLLEKGYKIAICEQVEDPKNAKGVVKREVIKLITPGT 111
>gi|300362260|ref|ZP_07058436.1| DNA mismatch repair protein MutS [Lactobacillus gasseri JV-V03]
gi|300353251|gb|EFJ69123.1| DNA mismatch repair protein MutS [Lactobacillus gasseri JV-V03]
Length = 857
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P D +D +NG P GS + N V M +F
Sbjct: 550 FATVSE--QNNYVRP---DFTVDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTDIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGCFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSL+L DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLILFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPRKVLREA 783
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>gi|329924183|ref|ZP_08279383.1| DNA mismatch repair protein MutS [Paenibacillus sp. HGF5]
gi|328940833|gb|EGG37145.1| DNA mismatch repair protein MutS [Paenibacillus sp. HGF5]
Length = 923
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 20/303 (6%)
Query: 579 KAKAKVLELLRGLSSELQTKINILVFASMLLV-------IGKALFAHVSEGRRRKWVFPA 631
+A+ K+++L L +EL+ K+N V L + ++L A +E R +V P
Sbjct: 510 EAQEKMVDLEYALFTELRDKLNTQVSRLQKLAERIAEIDVYQSLAAVSAEYR---FVKPE 566
Query: 632 LKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDMQ----SLFLLTGPNGGGKSSLLR 686
L + G + + G P + S+ + N D++ S+ L+TGPN GKS+ +R
Sbjct: 567 LSE----GYDYIVEGGRHPVVEAVMKDSSFIANATDLRKDGSSILLITGPNMAGKSTYMR 622
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ S+L G VPAE A IP D I + + D G+S+F VEM++I+ + T
Sbjct: 623 QVALLSILAQMGCFVPAERAVIPLVDRIFTRIGAADDLIGGQSTFMVEMADIQVMTEKAT 682
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
RSL++IDE+ RGT T++G IA ++IE + D+IGC +VSTH H + L +
Sbjct: 683 PRSLIIIDELGRGTSTSEGMAIAQAVIEYVHDHIGCKALVSTHFHELAHLQESLGGLKNY 742
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAA 865
+M + + KL+ G S A+ G+P +II RA L + + A
Sbjct: 743 SMAVQESGDKVHFLRKLIPGAADSSYGIYCARLAGLPGSIIDRAYGLLQGLEMASLAAVA 802
Query: 866 REQ 868
EQ
Sbjct: 803 SEQ 805
>gi|294955628|ref|XP_002788600.1| DNA mismatch repair protein mutS, putative [Perkinsus marinus ATCC
50983]
gi|239904141|gb|EER20396.1| DNA mismatch repair protein mutS, putative [Perkinsus marinus ATCC
50983]
Length = 572
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 120/466 (25%), Positives = 201/466 (43%), Gaps = 69/466 (14%)
Query: 552 KGRKVG-EEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLV 610
+GR G +++++ VE A RY A A A+ +LR L L + + L+ AS V
Sbjct: 103 RGRSEGMSKYWTSKGVEAAASRYVAACDSATARARRMLRELCGVLSSMLGGLIAASHWSV 162
Query: 611 IGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAA-EGSAVHNTVDM-- 667
+ + H R+ W L + E + + GL PYW ++ G+A N +
Sbjct: 163 VLTFAYLHTENSLRKGWTLAELTEGE---GVRMDVKGLKPYWMESPPRGTARLNDFSLGE 219
Query: 668 -QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP-AESASIPYFDAIMLHMKSYDSPA 725
S L+TG N GKS+ LRSICA +L GL P AE +I +++ D P+
Sbjct: 220 GSSFALITGCNESGKSTFLRSICALALTSNTGLFSPCAEGTAISRLTDLLVMFPRGDRPS 279
Query: 726 DGKSSFQVEMSEIRSI---VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL 782
+ S+ +E + ++ + + +++LV++DE R T G + S +E G
Sbjct: 280 EELSAHALECATLKVVDRDACRSAAKALVVVDEFGRATSPVDGAALTVSQLERFVAAGVA 339
Query: 783 GIVSTHL-------------HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 829
+ +THL GI + +++++ A +G + + V T+K+ G+C
Sbjct: 340 CLWATHLQADVIRVLSPEVAQGIATWRMRVEDDAL--LGGDLYPSRKV-TYKIESGVCSN 396
Query: 830 SLAFETAKREGVPETIIQRAEDLY----------------IACGVNCVMIAAREQ----- 868
S+ TA + G+P +++ RA L + + ++A Q
Sbjct: 397 SMGIYTANQIGLPSSMVSRAMQLRQMLVGEEVGTPLPERPVEVDLAEAILAVSSQGHSET 456
Query: 869 ---------PPPSIIGASCVYVM-LRPD--------KKLYIGQTDDLDGRIRAHRGK--E 908
PPP +S VYV+ L P ++ Y+G+T++L R+ HR + E
Sbjct: 457 LLHLSPDSMPPPLYQASSVVYVLALMPRGGGGGGAVQEYYVGETENLSKRLEQHRRRLEE 516
Query: 909 GMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRN 954
+ GK A IE LI L +G L + DG HR
Sbjct: 517 THVITGIDCVLTRGKGEAQSIEGALIRHLQGRGARLISAHDGAHRG 562
>gi|268318972|ref|YP_003292628.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii FI9785]
gi|262397347|emb|CAX66361.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii FI9785]
Length = 857
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P + D +NG P GS + N V M ++F
Sbjct: 550 FATVSE--QNNYVRP---NFATDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTNIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGSFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKALFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREA 783
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>gi|253682135|ref|ZP_04862932.1| DNA mismatch repair protein MutS [Clostridium botulinum D str.
1873]
gi|253561847|gb|EES91299.1| DNA mismatch repair protein MutS [Clostridium botulinum D str.
1873]
Length = 895
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 6/220 (2%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + ++L G VPA+ AS+ D I + + D A G
Sbjct: 607 HQLLLITGPNMAGKSTYMRQVALINVLAQIGSFVPAKKASVVICDKIFTRIGASDDLAKG 666
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SL+L+DE+ RGT T G IA S+IE + +N+ +
Sbjct: 667 KSTFMVEMWEVANILNNATSKSLILLDEVGRGTSTYDGLSIAWSVIEYICKNNNLKSKTL 726
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + SL KI+ ++ + +D + K+++G ES E AK G+P+
Sbjct: 727 FATHYHELTSLEGKIQGVKNYSIAVKKVDDDIIFLRKIIEGGADESYGIEVAKLAGIPKD 786
Query: 845 IIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLR 884
+I RA+++ + + I E+ P + V L+
Sbjct: 787 VIDRAKEILLTLESGSISI---EEASPKTVSNKLEEVNLK 823
>gi|261406193|ref|YP_003242434.1| DNA mismatch repair protein MutS [Paenibacillus sp. Y412MC10]
gi|261282656|gb|ACX64627.1| DNA mismatch repair protein MutS [Paenibacillus sp. Y412MC10]
Length = 923
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 20/303 (6%)
Query: 579 KAKAKVLELLRGLSSELQTKINILVFASMLLV-------IGKALFAHVSEGRRRKWVFPA 631
+A+ K+++L L +EL+ K+N V L + ++L A +E R +V P
Sbjct: 510 EAQEKMVDLEYALFTELRDKLNTQVSRLQKLAERIAEIDVYQSLAAVSAEYR---FVKPE 566
Query: 632 LKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDMQ----SLFLLTGPNGGGKSSLLR 686
L + G + + G P + S+ + N D++ S+ L+TGPN GKS+ +R
Sbjct: 567 LSE----GYDYIVEGGRHPVVEAVMKDSSFIANGTDLRKDGSSILLITGPNMAGKSTYMR 622
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ S+L G VPAE A IP D I + + D G+S+F VEM++I+ + T
Sbjct: 623 QVALISILAQMGCFVPAERAVIPLVDRIFTRIGAADDLIGGQSTFMVEMADIQVMTEKAT 682
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
RSL++IDE+ RGT T++G IA ++IE + D+IGC +VSTH H + L +
Sbjct: 683 PRSLIIIDELGRGTSTSEGMAIAQAVIEYVHDHIGCKALVSTHFHELAHLQESLGGLKNY 742
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAA 865
+M + + KL+ G S A+ G+P +II RA L + + A
Sbjct: 743 SMAVQESGDKVHFLRKLIPGAADSSYGIYCARLAGLPGSIIDRAYGLLQGLEMASLAAVA 802
Query: 866 REQ 868
EQ
Sbjct: 803 SEQ 805
>gi|227888714|ref|ZP_04006519.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii ATCC
33200]
gi|227850741|gb|EEJ60827.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii ATCC
33200]
Length = 857
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P + D +NG P GS + N V M ++F
Sbjct: 550 FATVSE--QNNYVRP---NFATDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTNIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGSFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKALFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREA 783
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>gi|152997735|ref|YP_001342570.1| DNA mismatch repair protein MutS [Marinomonas sp. MWYL1]
gi|189083158|sp|A6W1Q6.1|MUTS_MARMS RecName: Full=DNA mismatch repair protein MutS
gi|150838659|gb|ABR72635.1| DNA mismatch repair protein MutS [Marinomonas sp. MWYL1]
Length = 883
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 7/238 (2%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D +SL ++TGPN GGKS+ +R I +LL G VPAESASI D I M S D A
Sbjct: 610 DKRSLLMITGPNMGGKSTYMRQIALITLLAHTGCFVPAESASISVVDRIFTRMGSSDDLA 669
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGI 784
G+S+F VEM+E +I+ + SLVL+DE+ RGT T G +A + ++ L N + C +
Sbjct: 670 GGRSTFMVEMTETANILNNASKNSLVLMDEVGRGTSTFDGLSLAWAAVDYLANKLKCYVL 729
Query: 785 VSTHLHGIFSLPLKIKNAAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+TH + +L +++NAA + TEY D + V K+ +G +S + A+ GVP
Sbjct: 730 FATHYFELTTLADQLENAANVHLTATEYED-EIVFLHKVHEGPASQSYGLQVAQLAGVPR 788
Query: 844 TII----QRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDL 897
+I Q+ ++L + G++ + S I A +++ K Y Q D+
Sbjct: 789 DVIGHAKQKLKELEVVTGIDLDTKTIETKANSSSIKAKTKEHLVKESKNGYQPQQVDM 846
Score = 43.1 bits (100), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDA-----CILVEYAGLNPFGGLRPESIPKAGCPVVNL 105
KS+ P ++L R+GDFYE DA + + GG+ IP AG P
Sbjct: 19 LKSQHPNQLLFYRMGDFYELFYDDAKRASRLLDITLTARGHSGGI---PIPMAGIPYHAA 75
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L R G SV + E+ P ++ R I+ PG+
Sbjct: 76 ENYIARLVRMGESVVVAEQTGDPATSKGPVERQIARIVTPGT 117
>gi|182418497|ref|ZP_02949790.1| DNA mismatch repair protein MutS [Clostridium butyricum 5521]
gi|237667660|ref|ZP_04527644.1| DNA mismatch repair protein MutS [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377660|gb|EDT75205.1| DNA mismatch repair protein MutS [Clostridium butyricum 5521]
gi|237656008|gb|EEP53564.1| DNA mismatch repair protein MutS [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 956
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 10/222 (4%)
Query: 662 HNTV---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+NT+ D + L L+TGPN GKS+ +R + +L+ G VPA SA+I D I +
Sbjct: 597 NNTILNDDDKELLLITGPNMAGKSTYMRQVALITLMAQIGSFVPAVSANISICDKIFTRI 656
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-- 776
+ D A GKS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE +
Sbjct: 657 GASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYITK 716
Query: 777 -DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
+N+ C + +TH H + L I+ ++ + + + K+++G ES E
Sbjct: 717 NENLRCKTLFATHYHELVKLEGTIRGVKNYSVAVKKNEDSVIFLRKIIEGGADESYGIEV 776
Query: 836 AKREGVPETIIQRA----EDLYIACGVNCVMIAAREQPPPSI 873
AK G+P +I+RA EDL A V+ +++ E I
Sbjct: 777 AKLAGLPNAVIERAREILEDLEKANKVDINNLSSYETTIKEI 818
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
E ++ K ++ +L R+GDFYE DA + L G GL E P G P
Sbjct: 9 EYMKTKEQYNDCILFYRLGDFYEMFFDDAITVSRELELVLTGKNCGLE-ERAPMCGIPHH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHD---- 159
+ L GY V I E+++ P QA+ R + PG+ +V +++D
Sbjct: 68 AAAAYIPRLVNKGYKVAICEQLEDPKQAKGIVKRGVVKIITPGT-FVDSNSNLENDNTYL 126
Query: 160 LDFPEPMPVIGVSRS 174
+ E + IG+S S
Sbjct: 127 MSIYEDVEKIGISTS 141
>gi|260102903|ref|ZP_05753140.1| DNA mismatch repair protein HexA [Lactobacillus helveticus DSM
20075]
gi|417015925|ref|ZP_11946959.1| DNA mismatch repair protein MutS [Lactobacillus helveticus MTCC
5463]
gi|260083292|gb|EEW67412.1| DNA mismatch repair protein HexA [Lactobacillus helveticus DSM
20075]
gi|328462816|gb|EGF34683.1| DNA mismatch repair protein MutS [Lactobacillus helveticus MTCC
5463]
Length = 865
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 109/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M S +FL+TGPN GKS+ +R + +++ G VPA+SA++P FD I
Sbjct: 587 GSYIPNDVKMDSATNIFLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSAALPIFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 647 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + SL + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKALFATHYHELTSLDETLDYLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P T+++ A L
Sbjct: 767 HVAQLAGLPRTVLREATKL 785
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 14 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHMAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 73 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 113
>gi|421858021|ref|ZP_16290310.1| mismatch repair ATPase [Paenibacillus popilliae ATCC 14706]
gi|410832471|dbj|GAC40747.1| mismatch repair ATPase [Paenibacillus popilliae ATCC 14706]
Length = 930
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 144/286 (50%), Gaps = 18/286 (6%)
Query: 579 KAKAKVLELLRGLSSELQTKI--NILVFASMLLVIGK----ALFAHVSEGRRRKWVFPAL 632
+A+ K++EL L S+L+ +I I ++ VI + A VS R +V P +
Sbjct: 511 EAEDKMIELEYDLFSQLRQRIGEQIRRLQTLAEVIAEIDVYQSLAAVSTAHR--FVRPEI 568
Query: 633 KDIELDGANCLKMNGLSPYWFDAAE-GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRS 687
D G + L G P E GS + N ++ + L+TGPN GKS+ +R
Sbjct: 569 TD----GYDMLIEAGRHPVVEAVMESGSFMANDTVLEEQDAGMLLITGPNMAGKSTYMRQ 624
Query: 688 ICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 747
+ S+L G VPA+ A +P D I + + D G+S+F VEM +I+ + T
Sbjct: 625 VALMSILTQMGSFVPADRAVMPIVDRIFTRIGAADDLIGGQSTFMVEMMDIQVMTAKATR 684
Query: 748 RSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 806
+SLV+IDE+ RGT T++G IA ++IE + D IGC +VSTH H + L ++
Sbjct: 685 QSLVIIDELGRGTSTSEGMSIAQAVIEFVHDQIGCKALVSTHFHELAHLEERLNGLRNVC 744
Query: 807 MGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
M + Q KL+ G S AK G+P++II+R+ DL
Sbjct: 745 MAVQESGNQVTFLRKLIPGAASTSYGIYCAKLAGLPDSIIRRSYDL 790
>gi|403253346|ref|ZP_10919647.1| DNA mismatch repair protein MutS [Thermotoga sp. EMP]
gi|402810880|gb|EJX25368.1| DNA mismatch repair protein MutS [Thermotoga sp. EMP]
Length = 793
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQMGSFVPAQKAVLPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T +SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTKKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+PE +I RA ++
Sbjct: 752 IAGIPERVINRAYEI 766
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ L+ K ++ +LL R+GDFYEA DA I+ + + R + P AG P L
Sbjct: 9 QYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMAGIPYHALN 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPM 166
L L GY V I ++++ P++++ R ++ PGS I D E
Sbjct: 66 TYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS--------IVEDEFLSETN 117
Query: 167 PVIGVSRSAKG-----YCIISILETMKTYSLEDGLTEDAL 201
+ V KG +C IS E + S ++ T D L
Sbjct: 118 NYMAVVSEEKGRYCTVFCDISTGEVLVHESSDEQETMDLL 157
>gi|42518561|ref|NP_964491.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii NCC 533]
gi|48428289|sp|P61668.1|MUTS_LACJO RecName: Full=DNA mismatch repair protein MutS
gi|41582846|gb|AAS08457.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii NCC 533]
Length = 857
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P + D +NG P GS + N V M ++F
Sbjct: 550 FATVSE--QNNYVRP---NFVTDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTNIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGSFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKALFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREA 783
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>gi|406908404|gb|EKD48917.1| hypothetical protein ACD_64C00070G0008 [uncultured bacterium]
Length = 870
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 14/304 (4%)
Query: 556 VGEEWFSTLKVEE---ALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIG 612
VG+E ++T ++ + +ER H ++ + ++ ++ + S+ T++ L A L
Sbjct: 499 VGKERYTTSELSQLAYDIERAHAQISEREKELFTQVKQMVSQHGTQLRKLAHALAHL--- 555
Query: 613 KALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQS 669
AL + P D + L +G P ++E + N D QS
Sbjct: 556 DALHGLAKVAYNNGYTRPEFSD----ARDILIKDGKHPIVEVSSETGFIPNDTQLTDAQS 611
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L+++TGPN GGKS+ LR + ++ CG VPA+ A +P D I + + D+ A GKS
Sbjct: 612 LWIITGPNMGGKSTYLRQVALICVMAQCGSFVPAKHAQLPLLDRIFTRIGAGDNLAAGKS 671
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E SI + T SLV++DE+ RGT T G IA ++IE L + + + +TH
Sbjct: 672 TFLVEMEETASICSQATRNSLVILDEVGRGTSTFDGLAIAQAVIEYLYETVQARCLFATH 731
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L + A ++ + V +K++ G+ S E AK +P +I R
Sbjct: 732 YHELTQLSTRYPGIAPFYAASKKTENGIVFLYKMIQGVADGSFGVEVAKLAQLPSRVISR 791
Query: 849 AEDL 852
+++L
Sbjct: 792 SQEL 795
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 37 GSLKEGTLNWEMLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLR 91
GS+ + + M Q+ K+ +P +L +VGDFYE DA I + G L G
Sbjct: 2 GSVMQKKITPLMQQYFDIKATYPDTLLFFQVGDFYELFFEDAQIAASFLGIALTSRGMHN 61
Query: 92 PESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT 129
E IP G P+ L L + G+ V + ++++ T
Sbjct: 62 DEPIPLCGVPIHAKDHYLHKLIKGGFKVAVCDQLEEAT 99
>gi|322371551|ref|ZP_08046097.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
gi|320548842|gb|EFW90510.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
Length = 888
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 106/189 (56%), Gaps = 1/189 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
+D +L ++TGPN GKS+ +R + ++L G VPA+ A + D + + + D
Sbjct: 634 LDHDTLAVITGPNMAGKSTYMRQVALITILAQVGSFVPADEARLELVDRVFTRVGASDDI 693
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG 783
A G+S+F VEM+E+ I+ T RSL+L+DE+ RGT T G IA S+ E + D IG
Sbjct: 694 AGGRSTFMVEMTELADILGNATDRSLILLDEVGRGTSTTDGFAIARSVTEHVHDEIGAKT 753
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+ +TH H + ++ + NA G DG+ V + +G S E A+ GVPE
Sbjct: 754 LFATHHHDLTAVADDLPNAINLHFGATERDGEVVFDHHISEGATMASYGVEVAQLAGVPE 813
Query: 844 TIIQRAEDL 852
++I+R++DL
Sbjct: 814 SVIRRSKDL 822
>gi|406967699|gb|EKD92716.1| hypothetical protein ACD_28C00354G0004, partial [uncultured
bacterium]
Length = 776
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 149/302 (49%), Gaps = 7/302 (2%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL 615
V E + T +++ E+ A K+KA EL R L + I ++ + + L
Sbjct: 404 VNAERYITPELKTYEEKVLTAEDKSKALEAELFRELRETIMESIGLIQQNAEAIAELDVL 463
Query: 616 FAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFL 672
+ S + ++V P L+D + + G + ++P + H + Q + L
Sbjct: 464 LSFTSVALKNRYVKPQLRDDFTLTIQGGRHPVVETMNPSGDFIPNDT--HFNAENQQILL 521
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ LR + SL+ G VPA+SA I D I + + D+ + G+S+F
Sbjct: 522 ITGPNMSGKSTFLRQVALISLMAQIGSYVPAQSAEIAVVDRIFTRVGASDNLSKGQSTFM 581
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E +I+ T+RSL+++DEI RGT T G IA +I+E L IG + +TH H
Sbjct: 582 VEMQEAANILNNATARSLIILDEIGRGTSTYDGLSIAWAILEYLHQQIGAKTLFATHYHE 641
Query: 792 IFSLPLKIKNAA-YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ ++ +++ A Y + E V K+ G +S E AK G+P +I++A+
Sbjct: 642 LIAVTERLERAQNYCVLVHEDTQNGVVFLHKIQAGGIDKSYGIEVAKLAGLPRAVIEKAQ 701
Query: 851 DL 852
+
Sbjct: 702 HI 703
>gi|172057081|ref|YP_001813541.1| DNA mismatch repair protein MutS [Exiguobacterium sibiricum 255-15]
gi|229486461|sp|B1YMD7.1|MUTS_EXIS2 RecName: Full=DNA mismatch repair protein MutS
gi|171989602|gb|ACB60524.1| DNA mismatch repair protein MutS [Exiguobacterium sibiricum 255-15]
Length = 843
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 19/287 (6%)
Query: 577 GAKAKAKVLE--LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD 634
GA+ K+ LE L + +++T I L S + L A R +V P
Sbjct: 498 GAEEKSITLEYELFCQVRDQVKTHIESLQRVSRRIAELDVLVALAETAERHDYVRP---- 553
Query: 635 IELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICA 690
+ L G N + NG P G V N +++ + + L+TGPN GKS+ +R
Sbjct: 554 VTLTGRNVMIENGRHPVIETVLPRGEYVANGINLNEDREMLLITGPNMSGKSTYMRQFAL 613
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
+LL G VPA A +P FD I + + D G+S+F VEM E + +T T RSL
Sbjct: 614 IALLHQIGSFVPASRAELPIFDQIFTRIGAADDLVSGQSTFMVEMVETQEALTRATDRSL 673
Query: 751 VLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF----SLPLKIKNAAYK 805
+L+DEI RGT T G +A +I+E + +++G + STH H + S+P ++ N +
Sbjct: 674 ILLDEIGRGTSTYDGMALAQAIVEHIAEHVGAKTLFSTHYHELTVLEDSMP-RLANVHVR 732
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
A+ DG+ V ++ DG +S A+ +P+ +I RAE L
Sbjct: 733 AVEQ---DGRVVFLHEVRDGKADQSYGIHVARLADLPDALIARAEVL 776
>gi|410723797|ref|ZP_11363019.1| DNA mismatch repair protein MutS [Clostridium sp. Maddingley
MBC34-26]
gi|410602799|gb|EKQ57256.1| DNA mismatch repair protein MutS [Clostridium sp. Maddingley
MBC34-26]
Length = 923
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 6/200 (3%)
Query: 662 HNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+NT+ QS L L+TGPN GKS+ +R + +L+ G VPA SA+I D I +
Sbjct: 597 NNTILNQSDKELLLITGPNMAGKSTYMRQVALITLMAQIGSFVPAASANISICDKIFTRI 656
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-- 776
+ D A GKS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE +
Sbjct: 657 GASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYITG 716
Query: 777 -DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
+N+ C + +TH H + L + ++ + + + K+V+G ES E
Sbjct: 717 NENLRCKTLFATHYHELVKLEGVLPGVKNYSVAVKKMKDSVIFLRKIVEGGADESYGIEV 776
Query: 836 AKREGVPETIIQRAEDLYIA 855
AK G+PE +I RA+++ ++
Sbjct: 777 AKLAGLPEGVINRAKEILLS 796
>gi|385825393|ref|YP_005861735.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii DPC 6026]
gi|417837009|ref|ZP_12483249.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii pf01]
gi|329666837|gb|AEB92785.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii DPC 6026]
gi|338762688|gb|EGP13955.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii pf01]
Length = 857
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P + D +NG P GS + N V M ++F
Sbjct: 550 FATVSE--QNNYVRP---NFVTDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTNIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGSFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREA 783
Score = 47.4 bits (111), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>gi|225677035|ref|ZP_03788045.1| DNA mismatch repair protein [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225590924|gb|EEH12141.1| DNA mismatch repair protein [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 849
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + +
Sbjct: 651 IANSINLAGIHLITGPNMAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGA 710
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 711 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 770
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + +KN + +G+ + ++++GI ES AK
Sbjct: 771 KCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLA 830
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 831 GFPDSVLNRASEVF 844
>gi|42520087|ref|NP_966002.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42409824|gb|AAS13936.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 820
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + +
Sbjct: 622 IANSINLAGIHLITGPNMAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGA 681
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 682 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 741
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + +KN + +G+ + ++++GI ES AK
Sbjct: 742 KCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLA 801
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 802 GFPDSVLNRASEVF 815
>gi|48428294|sp|P61673.1|MUTS_WOLPM RecName: Full=DNA mismatch repair protein MutS
Length = 849
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + +
Sbjct: 651 IANSINLAGIHLITGPNMAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGA 710
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 711 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 770
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + +KN + +G+ + ++++GI ES AK
Sbjct: 771 KCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLA 830
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 831 GFPDSVLNRASEVF 844
>gi|403386461|ref|ZP_10928518.1| DNA mismatch repair protein MutS [Clostridium sp. JC122]
Length = 890
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 114/213 (53%), Gaps = 7/213 (3%)
Query: 653 FDAAEGSAVHNTVDMQS--LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
D E A +D ++ L L+TGPN GKS+ +R + +L+ G VPA+ A I
Sbjct: 589 LDVNEFVANDTKLDTKNNQLLLITGPNMAGKSTYMRQVALITLMAQIGSFVPAKFADISI 648
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
D I + + D A GKS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA
Sbjct: 649 CDKIFTRIGASDDLAGGKSTFMVEMWEVSNILRNATNKSLILLDEVGRGTSTYDGLSIAW 708
Query: 771 SIIETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGIC 827
S+IE + N+ C + +TH H + L ++ ++ + +D + K+++G
Sbjct: 709 SVIEYICKNSNMKCKTLFATHYHELTKLEGMVEGVRNYSIAVKEIDNSIIFLRKIIEGGA 768
Query: 828 RESLAFETAKREGVPETIIQRAEDLYIACGVNC 860
ES E AK G+PE +I RA + I C + C
Sbjct: 769 DESYGIEVAKLAGIPEIVIDRARE--ILCKLEC 799
Score = 40.0 bits (92), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ K K ++ R+GDFYE DA ++ + L G GL E P G P
Sbjct: 9 QYFSVKDKCKDAIVFFRLGDFYEMFFEDAKLVSKELELTLTGRDCGLE-ERAPMCGVPFH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L GY V I E+V+ P A+ R + PG+
Sbjct: 68 SAETYIGRLVAKGYKVAICEQVEDPAVAKGIVKRDVVKILTPGT 111
>gi|404371184|ref|ZP_10976492.1| DNA mismatch repair protein mutS [Clostridium sp. 7_2_43FAA]
gi|226912693|gb|EEH97894.1| DNA mismatch repair protein mutS [Clostridium sp. 7_2_43FAA]
Length = 933
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 112/203 (55%), Gaps = 7/203 (3%)
Query: 657 EGSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
+G V N + S L L+TGPN GKS+ +R + +L+ G VPA+SA+I D
Sbjct: 590 KGEFVSNDTTLNSNDNRLLLITGPNMAGKSTYMRQVALITLMAQIGSFVPAKSANISICD 649
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
I + + D A GKS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+
Sbjct: 650 KIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSV 709
Query: 773 IETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 829
IE + +N+ C + +TH H + L I+ ++ +D + K+V+G +
Sbjct: 710 IEYISKNNNLKCKTLFATHYHELTKLEGVIEGVKNYSVAVSEIDDNIIFLRKIVEGGADQ 769
Query: 830 SLAFETAKREGVPETIIQRAEDL 852
S E AK G+P +I RA+++
Sbjct: 770 SYGIEVAKLAGLPTQVIDRAKEI 792
>gi|153954199|ref|YP_001394964.1| DNA mismatch repair protein MutS [Clostridium kluyveri DSM 555]
gi|219854807|ref|YP_002471929.1| hypothetical protein CKR_1464 [Clostridium kluyveri NBRC 12016]
gi|189030764|sp|A5N8I5.1|MUTS_CLOK5 RecName: Full=DNA mismatch repair protein MutS
gi|254766624|sp|B9E1Z0.1|MUTS_CLOK1 RecName: Full=DNA mismatch repair protein MutS
gi|146347080|gb|EDK33616.1| MutS [Clostridium kluyveri DSM 555]
gi|219568531|dbj|BAH06515.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 871
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 7/202 (3%)
Query: 658 GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G V N D+ + L L+TGPN GKS+ +R + +++ G VPA+SASI D
Sbjct: 595 GEFVSNDTDIDTGENQLLLITGPNMAGKSTYMRQVALVTIMAQIGSFVPAKSASISICDK 654
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA S+I
Sbjct: 655 IFTRIGASDDLASGKSTFMVEMWEVSNILKNATNKSLILLDEVGRGTSTYDGLSIAWSVI 714
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + + C + +TH H + L KIK + + ++ V K++ G +S
Sbjct: 715 EYICRESKLRCKTLFATHYHELTKLEGKIKGVKNYCVSVKEVENNIVFLRKIIRGGADQS 774
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +++RA ++
Sbjct: 775 YGIEVAKLAGLPEEVLKRAREI 796
>gi|73669015|ref|YP_305030.1| DNA mismatch repair protein MutS [Methanosarcina barkeri str.
Fusaro]
gi|90109848|sp|Q46CE2.1|MUTS_METBF RecName: Full=DNA mismatch repair protein MutS
gi|72396177|gb|AAZ70450.1| DNA mismatch repair protein MutS [Methanosarcina barkeri str.
Fusaro]
Length = 900
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLF 671
A V+E ++ P L D L +G P + G V N +M
Sbjct: 580 LAEVAENN--NYIRPQLTD----DCKILIRDGRHPVVENTVHGGFVPNDTEMDCKENQFL 633
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R +++ G VPA ASI D + + ++D A G+S+F
Sbjct: 634 LVTGPNMAGKSTYMRQTALIAIMAQVGSFVPASYASIGIIDQVFTRIGAFDDLASGQSTF 693
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI---VSTH 788
VEM E+ +I+ + RSLVL+DEI RGT T G IA +++E L N G +G+ +TH
Sbjct: 694 MVEMVELANILNNASPRSLVLLDEIGRGTSTYDGYSIAKAVVEFLHNRGKVGVRALFATH 753
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L K+K + + + V K+V G S + A+ GVPE +I+R
Sbjct: 754 YHQLTALEEKLKRVKNYHVAVKEEGHELVFLRKIVPGATDRSYGIQVARLAGVPEKVIER 813
Query: 849 AEDL 852
A ++
Sbjct: 814 ANEI 817
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRP-ESIPKAGCPVVNLRQT 108
K +P ++ R+GDFYE+ G DA + + L G + E +P AG P +
Sbjct: 16 KQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDKSGERMPLAGIPYHAIDTY 75
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L GY V I E+++ P +A+ R + PG+
Sbjct: 76 LPRLINKGYKVAICEQLEDPKKAKGIVKRGVVRVVTPGT 114
>gi|15644466|ref|NP_229518.1| DNA mismatch repair protein MutS [Thermotoga maritima MSB8]
gi|418045777|ref|ZP_12683872.1| DNA mismatch repair protein mutS [Thermotoga maritima MSB8]
gi|6226653|sp|P74926.2|MUTS_THEMA RecName: Full=DNA mismatch repair protein MutS
gi|4982296|gb|AAD36785.1|AE001811_5 DNA mismatch repair protein [Thermotoga maritima MSB8]
gi|351676662|gb|EHA59815.1| DNA mismatch repair protein mutS [Thermotoga maritima MSB8]
Length = 793
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T++SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA ++
Sbjct: 752 IAGIPDRVINRAYEI 766
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA I+ + + R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P L L L GY V I ++++ P++++ R ++ PGS
Sbjct: 58 GIPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS 106
>gi|403380644|ref|ZP_10922701.1| DNA mismatch repair protein MutS [Paenibacillus sp. JC66]
Length = 961
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 102/186 (54%), Gaps = 1/186 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
+D + L+TGPN GKS+ +R + S++ G VPAE A++P D I + + D
Sbjct: 626 MDTNRVLLITGPNMAGKSTYMRQVAMISIMAQMGSFVPAEQAAVPITDRIFTRIGAADDL 685
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG 783
G+S+F VEM +I+++ T RSLV+IDE+ RGT T +G IA ++IE L D IGC
Sbjct: 686 IGGQSTFMVEMMDIQAMTAKATPRSLVIIDELGRGTSTGEGMAIAQAVIEYLHDQIGCKT 745
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+VSTH H + L + +M + Q KLV G S A+ G+PE
Sbjct: 746 LVSTHFHELAHLEDSLTYLHNYSMAVKESGRQVTFLRKLVPGAASTSYGIYCAQIAGLPE 805
Query: 844 TIIQRA 849
+II R+
Sbjct: 806 SIISRS 811
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLRPESIPKAGCPVVN 104
+ L KS +L R+GDFYE DA + L G G E IP G P +
Sbjct: 9 QYLSVKSGVQDALLFFRLGDFYELFFEDAKVASRELELTLTGRDGGAKEKIPMCGVPYHS 68
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L G+ V I E+V+ P A+ R + PG+
Sbjct: 69 ADGYIARLIEKGFKVAICEQVENPQDAKGIVRREVVKVVTPGT 111
>gi|161506972|ref|YP_001576926.1| DNA mismatch repair protein MutS [Lactobacillus helveticus DPC
4571]
gi|172048182|sp|A8YTH9.1|MUTS_LACH4 RecName: Full=DNA mismatch repair protein MutS
gi|160347961|gb|ABX26635.1| DNA mismatch repair protein [Lactobacillus helveticus DPC 4571]
Length = 858
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M S +FL+TGPN GKS+ +R + +++ G VPA+SA++P FD I
Sbjct: 580 GSYIPNDVKMDSATNIFLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSAALPIFDQI 639
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + + T RSLVL DEI RGT T G +AG+I++
Sbjct: 640 FTRIGAADDLISGQSTFMVEMSEANAALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 699
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + SL + +G +G+ + K++ G +S
Sbjct: 700 YLHDKVGAKALFATHYHELTSLDETLDYLKNIHVGATEENGKLIFLHKILPGPADQSYGI 759
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 760 HVAQLAGLPRAVLREATKL 778
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 7 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHMAVD 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 66 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 106
>gi|225630016|ref|YP_002726807.1| DNA mismatch repair protein MutS [Wolbachia sp. wRi]
gi|254766648|sp|C0R5H4.1|MUTS_WOLWR RecName: Full=DNA mismatch repair protein MutS
gi|225591997|gb|ACN95016.1| DNA mismatch repair protein MutS [Wolbachia sp. wRi]
Length = 854
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + +
Sbjct: 656 IANSINLAGIHLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHIGVIDKIFSRVGA 715
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 716 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 775
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + +KN + +G+ + ++++GI ES AK
Sbjct: 776 KCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLA 835
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 836 GFPDSVLNRASEVF 849
>gi|1619909|gb|AAB16999.1| DNA mismatch repair protein [Thermotoga maritima]
Length = 793
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T++SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA ++
Sbjct: 752 IAGIPDRVINRAYEI 766
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA I+ + + R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P L L L GY V I ++++ P++++ R ++ PGS
Sbjct: 58 GIPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS 106
>gi|448629878|ref|ZP_21672773.1| DNA mismatch repair protein MutS [Haloarcula vallismortis ATCC
29715]
gi|445757299|gb|EMA08654.1| DNA mismatch repair protein MutS [Haloarcula vallismortis ATCC
29715]
Length = 945
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 654 LAVVTGPNMSGKSTYMRQVALICLLAQAGGFVPAKAADLPILDRVFTRVGASDDIAGGRS 713
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T+ SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 714 TFMIEMTELATILDAATADSLVLLDEVGRGTSTADGLAIARAVTEFLHDEVGAYTLFATH 773
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + A + T DG +L G S E A GVPE++++R
Sbjct: 774 HHDLTAVAADLSGATNRHFETSREDGDVAFDHELAPGPAAASYGVEVASMAGVPESVVER 833
Query: 849 AEDL 852
+ DL
Sbjct: 834 SRDL 837
>gi|404329060|ref|ZP_10969508.1| DNA mismatch repair protein MutS [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 882
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 107/201 (53%), Gaps = 4/201 (1%)
Query: 656 AEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
A+G+ V N + M + L+TGPN GGKS+ +R +++ G VPA+ A +P FD
Sbjct: 583 ADGAFVANDIHMDKSCDMLLITGPNMGGKSTYMRQAALTAIMAQIGCFVPADKAVLPIFD 642
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
I + + D G+S+F VEM E R +T T SL+L+DEI RGT T G IA +I
Sbjct: 643 QIFTRIGAADDLVSGQSTFMVEMDEARYALTHATQNSLILLDEIGRGTSTYDGIAIAQAI 702
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
+E + +I STH H + L K++ +G +G V K++ G +S
Sbjct: 703 VEYIHQHISAKTFFSTHYHELTFLDQKLERLKNIHVGAMEENGTVVFLHKVLPGQADKSY 762
Query: 832 AFETAKREGVPETIIQRAEDL 852
AK G+P+ +I RA+D+
Sbjct: 763 GIHVAKLAGLPDALIDRADDI 783
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 49 LQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVNLR 106
L K+++P L R+GDFYE DA + L G + E IP G P +
Sbjct: 11 LSVKAQYPDAFLFYRIGDFYELFFDDALKASKELEITLTSRTGGKDEYIPMCGVPHHAVN 70
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
Q + L GY + I E+++ P A+ R + PG+
Sbjct: 71 QYIKVLIDKGYRIAICEQMEDPKLAKGMVKRGVIQMITPGT 111
>gi|58336745|ref|YP_193330.1| DNA mismatch repair protein MutS [Lactobacillus acidophilus NCFM]
gi|75507645|sp|Q5FLX5.1|MUTS_LACAC RecName: Full=DNA mismatch repair protein MutS
gi|58254062|gb|AAV42299.1| DNA mismatch repair [Lactobacillus acidophilus NCFM]
Length = 856
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N+V+M S ++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 580 GSYIPNSVEMDSSTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 639
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 640 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 699
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G +TH H + L + + +G +G+ + K++ G +S
Sbjct: 700 YLHDKVGAKAFFATHYHELTDLDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 759
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P+++++ A L
Sbjct: 760 HVAQLAGLPKSVLREATKL 778
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 7 EIKKQYPDAFLFYRVGDFYELFEEDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHMAVD 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 66 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 106
>gi|331269502|ref|YP_004395994.1| DNA mismatch repair protein MutS [Clostridium botulinum BKT015925]
gi|329126052|gb|AEB75997.1| DNA mismatch repair protein MutS [Clostridium botulinum BKT015925]
Length = 895
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 3/191 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q L L+TGPN GKS+ +R + ++L G VPA+ AS+ D I + + D A G
Sbjct: 607 QQLLLITGPNMAGKSTYMRQVALINVLAQIGSFVPAKKASVVICDKIFTRIGASDDLAKG 666
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SL+L+DE+ RGT T G IA S+IE + + + +
Sbjct: 667 KSTFMVEMWEVANILNNATSKSLILLDEVGRGTSTYDGLSIAWSVIEYICKNNKLKSKTL 726
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + SL KI+ ++ + +D + K++ G ES E AK G+P+
Sbjct: 727 FATHYHELTSLEGKIEGVKNYSIAVKKVDDDIIFLRKIIKGGADESYGIEVAKLAGIPKD 786
Query: 845 IIQRAEDLYIA 855
+I RA+++ +
Sbjct: 787 VIDRAKEILVT 797
>gi|281412509|ref|YP_003346588.1| DNA mismatch repair protein MutS [Thermotoga naphthophila RKU-10]
gi|281373612|gb|ADA67174.1| DNA mismatch repair protein MutS [Thermotoga naphthophila RKU-10]
Length = 793
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T +SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA ++
Sbjct: 752 IAGIPDRVINRAYEI 766
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA I+ + + R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P L L L GY V I ++++ P++++ R ++ PGS
Sbjct: 58 GIPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS 106
>gi|58698275|ref|ZP_00373193.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58535199|gb|EAL59280.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 789
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + +
Sbjct: 591 IANSINLAGIHLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHIGVIDKIFSRVGA 650
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 651 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 710
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + +KN + +G+ + ++++GI ES AK
Sbjct: 711 KCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLA 770
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 771 GFPDSVLNRASEVF 784
>gi|170288906|ref|YP_001739144.1| DNA mismatch repair protein MutS [Thermotoga sp. RQ2]
gi|238688840|sp|B1LAW3.1|MUTS_THESQ RecName: Full=DNA mismatch repair protein MutS
gi|170176409|gb|ACB09461.1| DNA mismatch repair protein MutS [Thermotoga sp. RQ2]
Length = 793
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T +SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA ++
Sbjct: 752 IAGIPDRVINRAYEI 766
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 44/241 (18%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA I+ + + R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDH 158
G P L L L GY V I ++++ P++++ R ++ PGS I
Sbjct: 58 GIPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS--------IVE 109
Query: 159 DLDFPEPMPVIGVSRSAKG-----YCIISILETMKTYSLEDGLTEDAL----VTKLRTSR 209
D E + V KG +C +S E + S ++ T D L ++++ S
Sbjct: 110 DEFLSETNNYMAVVSEEKGRYCTVFCDVSTGEVLVHESSDEQETLDLLKNYSISQIVCSE 169
Query: 210 YHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLE 269
+ L +SLR+ G ++ E I+ EW+ D L +V++ Y L+
Sbjct: 170 H----LKSSLRERFPG------------VYTESIS---EWYFSD-----LEEVEKAYNLK 205
Query: 270 N 270
+
Sbjct: 206 D 206
>gi|293376440|ref|ZP_06622672.1| DNA mismatch repair protein MutS [Turicibacter sanguinis PC909]
gi|292644949|gb|EFF63027.1| DNA mismatch repair protein MutS [Turicibacter sanguinis PC909]
Length = 879
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 5/206 (2%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + S++ G VPA SA++P FD + + + D G
Sbjct: 604 SILLITGPNMSGKSTYMRQLALISIMAQIGCFVPASSANLPIFDQVFTRIGAADDLVSGH 663
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + T SL+L+DEI RGT T G +A SIIE + DNIG + ST
Sbjct: 664 STFMVEMMETNYALEHATKDSLILLDEIGRGTATFDGMALAQSIIEYVHDNIGAKTLFST 723
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L + + + + E GQ + K+++G +S A+ +P +I
Sbjct: 724 HYHELTQLEQQCPHLQNRHVRAEEHQGQLIFMHKVMEGPSDKSYGIHVAEIAKLPSPLIT 783
Query: 848 RAEDLYIACGVNCVMIAAREQPPPSI 873
RA++L A + VMI QP P +
Sbjct: 784 RAKELLTALEEDKVMI----QPAPVV 805
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K + + R+GDFYE DA + +E A G E +P G P
Sbjct: 13 QYLTIKENYQDAFVFFRLGDFYELFFEDAQLAAKELEIALTGREAGAE-ERVPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFP 163
++ L GY V + E+V+ P A+ R + PG+ V + L+
Sbjct: 72 AADNYINRLIEKGYKVAVCEQVEDPASAKGVVRREVVRMLTPGT------VMNQNALNEK 125
Query: 164 EPMPVIGVSRSAKGYCII-SILETMKTYSLEDGLTEDALV 202
E +I + + +GY I+ S L T + Y++ L +DA V
Sbjct: 126 ENNFIISIVGTTQGYSIVYSDLSTGENYAM--NLEKDAQV 163
>gi|325845056|ref|ZP_08168372.1| DNA mismatch repair protein MutS [Turicibacter sp. HGF1]
gi|325488932|gb|EGC91325.1| DNA mismatch repair protein MutS [Turicibacter sp. HGF1]
Length = 879
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 5/206 (2%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + S++ G VPA SA++P FD + + + D G
Sbjct: 604 SILLITGPNMSGKSTYMRQLALISIMAQIGCFVPASSANLPIFDQVFTRIGAADDLVSGH 663
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + T SL+L+DEI RGT T G +A SIIE + DNIG + ST
Sbjct: 664 STFMVEMMETNYALEHATKDSLILLDEIGRGTATFDGMALAQSIIEYVHDNIGAKTLFST 723
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L + + + + E GQ + K+++G +S A+ +P +I
Sbjct: 724 HYHELTQLEQQCPHLQNRHVRAEEHQGQLIFMHKVMEGPSDKSYGIHVAEIAKLPSPLIT 783
Query: 848 RAEDLYIACGVNCVMIAAREQPPPSI 873
RA++L A + VMI QP P +
Sbjct: 784 RAKELLTALEEDKVMI----QPAPVV 805
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K + + R+GDFYE DA + +E A G E +P G P
Sbjct: 13 QYLTIKENYQDAFVFFRLGDFYELFFEDAQLAAKELEIALTGREAGAE-ERVPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFP 163
++ L GY V + E+V+ P A+ R + PG+ V + L+
Sbjct: 72 AADNYINRLIEKGYKVAVCEQVEDPASAKGVVRREVVRMLTPGT------VMNQNALNEK 125
Query: 164 EPMPVIGVSRSAKGYCII-SILETMKTYSLEDGLTEDALV 202
E +I + + +GY I+ S L T + Y++ L +DA V
Sbjct: 126 ENNFIISIVGTTQGYSIVYSDLSTGENYAM--NLEKDAQV 163
>gi|148270149|ref|YP_001244609.1| DNA mismatch repair protein MutS [Thermotoga petrophila RKU-1]
gi|166232148|sp|A5ILG0.1|MUTS_THEP1 RecName: Full=DNA mismatch repair protein MutS
gi|147735693|gb|ABQ47033.1| DNA mismatch repair protein MutS [Thermotoga petrophila RKU-1]
Length = 793
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNERRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T +SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA ++
Sbjct: 752 IAGIPDRVINRAYEI 766
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA I+ + + R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDH 158
G P L L L GY V I ++++ P++++ R ++ PGS I
Sbjct: 58 GIPYHALNSYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS--------ILE 109
Query: 159 DLDFPEPMPVIGVSRSAKG-YCII 181
D E + V KG YC I
Sbjct: 110 DEFLSETNNYMAVVSEEKGQYCTI 133
>gi|448679771|ref|ZP_21690316.1| DNA mismatch repair protein MutS [Haloarcula argentinensis DSM
12282]
gi|445769930|gb|EMA20999.1| DNA mismatch repair protein MutS [Haloarcula argentinensis DSM
12282]
Length = 936
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 106/192 (55%), Gaps = 3/192 (1%)
Query: 666 DMQSLFL--LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 723
D+Q FL +TGPN GKS+ +R + LL G VPA +A++P D + + + D
Sbjct: 659 DIQDPFLAVVTGPNMSGKSTYMRQVALICLLAQAGGFVPANAAALPILDRVFTRVGASDD 718
Query: 724 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 782
A G+S+F +EM+E+ +I+ A T+ SLVL+DE+ RGT TA G IA ++ E L D IG
Sbjct: 719 IAGGRSTFMIEMTELATILDAATADSLVLLDEVGRGTSTADGLAIARAVTEHLHDEIGAY 778
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + ++ + A + T D +L G S E A GVP
Sbjct: 779 TLFATHHHDLTAVAAALPGATNRHFETSREDSDVRFDHELAPGPAAASYGVEVASMAGVP 838
Query: 843 ETIIQRAEDLYI 854
E++++R+ DL +
Sbjct: 839 ESVVERSRDLLV 850
>gi|126697173|ref|YP_001092059.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT
9301]
gi|189083171|sp|A3PFD3.1|MUTS_PROM0 RecName: Full=DNA mismatch repair protein MutS
gi|126544216|gb|ABO18458.1| putative DNA mismatch repair protein [Prochlorococcus marinus str.
MIT 9301]
Length = 913
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q L +LTGPN GKS +R + +L G VPA +A I D I + + D +
Sbjct: 711 DNQKLIILTGPNASGKSCFIRQLGLIQILAQIGSFVPANNAEIKIADRIFTRIGAVDDQS 770
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEMSE SI+ TS SLVL+DEI RGT T G IA S+ E L I C I
Sbjct: 771 SGQSTFMVEMSETASILNQATSNSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIQCNTI 830
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L KN + E D Q + + ++V G +S E AK GVP+
Sbjct: 831 FATHYHELNYLKNSNKNIQNFQVLVEQNDDQLIFSHRIVRGGSNKSYGIEAAKLAGVPKE 890
Query: 845 IIQRAEDL 852
+I++A+ +
Sbjct: 891 VIEKAKSV 898
>gi|336053622|ref|YP_004561909.1| DNA mismatch repair protein mutS [Lactobacillus kefiranofaciens
ZW3]
gi|333956999|gb|AEG39807.1| DNA mismatch repair protein mutS [Lactobacillus kefiranofaciens
ZW3]
Length = 865
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M S +FL+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 587 GSYIPNDVKMDSATDIFLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 647 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + +L + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKALFATHYHELTALDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 767 HVAQLAGLPRAVLREATKL 785
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 14 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 73 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 113
>gi|385816997|ref|YP_005853387.1| DNA mismatch repair protein MutS [Lactobacillus amylovorus GRL1118]
gi|327182935|gb|AEA31382.1| DNA mismatch repair protein MutS [Lactobacillus amylovorus GRL1118]
Length = 866
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M S +FL+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 588 GSYIPNDVKMDSATNIFLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 647
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 648 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 707
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + +L + + +G +G+ + K++ G +S
Sbjct: 708 YLHDKVGAKALFATHYHELTALDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 767
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 768 HVAQLAGLPRAVLREATKL 786
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 114
>gi|339448738|ref|ZP_08652294.1| DNA mismatch repair protein MutS [Lactobacillus fructivorans KCTC
3543]
Length = 885
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 148/299 (49%), Gaps = 15/299 (5%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKI-NILVFASML--LVIGKAL 615
E FST +++E EA K+K+ E+ + +++ +I I AS + L + ++
Sbjct: 492 ERFSTPELKEKESIILEAEEKSKSLEYEIFTRVRDQIKKQIPRIQKLASGISRLDVLQS- 550
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA +SE + +++ P D G + G P S V N V M S
Sbjct: 551 FATISE--KYQFIKPQFND----GHDLNVKAGRHPVVERVMGAQSYVPNDVVMHPSVSEL 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +L G VPAESA +P FD I + + D GKS+F
Sbjct: 605 LITGPNMSGKSTYMRQLALIVILAQMGCFVPAESADMPIFDQIFTRIGAADDLISGKSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + T SL+L DEI RGT T G +A +IIE + DNIG + STH H
Sbjct: 665 MVEMREANEALKHATDNSLILFDEIGRGTSTYDGMALAQAIIEYIHDNIGAKTLFSTHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L ++K+ +G +G V K+++G S AK G+P+ +++RA
Sbjct: 725 ELTDLDHELKHLKNVHVGAVEKNGNLVFLHKIMNGPADRSYGINVAKLAGLPDQLLKRA 783
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES--IPKAGCPVVNLRQ 107
+ K ++P L R+GDFYE DA + L R IP G P +++
Sbjct: 16 EVKDQYPDAFLFYRIGDFYELFNEDAVKGAQLLELTLTQRSRKSDNPIPMCGVPHQSVQS 75
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L GY V I E+++ P A+ R + PG+
Sbjct: 76 YVDTLVDKGYKVAICEQMEDPKTAKGMVDRDVIQLVTPGT 115
>gi|315037642|ref|YP_004031210.1| DNA mismatch repair protein MutS [Lactobacillus amylovorus GRL
1112]
gi|325956127|ref|YP_004286737.1| DNA mismatch repair protein MutS [Lactobacillus acidophilus 30SC]
gi|312275775|gb|ADQ58415.1| DNA mismatch repair protein MutS [Lactobacillus amylovorus GRL
1112]
gi|325332692|gb|ADZ06600.1| DNA mismatch repair protein MutS [Lactobacillus acidophilus 30SC]
Length = 866
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M S +FL+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 588 GSYIPNDVKMDSATNIFLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 647
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 648 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 707
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + +L + + +G +G+ + K++ G +S
Sbjct: 708 YLHDKVGAKALFATHYHELTALDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 767
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 768 HVAQLAGLPRAVLREATKL 786
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 114
>gi|353327816|ref|ZP_08970143.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 836
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA + D I + +
Sbjct: 638 IANSINLAGIHLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHVGVIDKIFSRVGA 697
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 698 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 757
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + ++N M + +G+ + ++++GI ES AK
Sbjct: 758 KCRAIFATHYHELTKVGEYLENVKCFCMKIKEWNGEVIFLHEVIEGIADESYGIHVAKLA 817
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 818 GFPDSVLNRASEVF 831
>gi|88658581|ref|YP_507620.1| DNA mismatch repair protein [Ehrlichia chaffeensis str. Arkansas]
gi|123493029|sp|Q2GG13.1|MUTS_EHRCR RecName: Full=DNA mismatch repair protein MutS
gi|88600038|gb|ABD45507.1| DNA mismatch repair protein MutS [Ehrlichia chaffeensis str.
Arkansas]
Length = 804
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Query: 657 EGSAVHNTVD---MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G V N +D MQ + L+TGPN GKS+ LR +L G VPA+ A I D
Sbjct: 593 NGKFVANDIDLSLMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAQHAHIGVIDK 652
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D+ A G S+F VEM+E +I+ T +S V++DEI RGT T G IA S+I
Sbjct: 653 VFSRVGASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVI 712
Query: 774 ETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + N+ I +TH H + L ++N M E +G+ V +++ G +S
Sbjct: 713 EQIHNVNKSRAIFATHYHELSKLDRYLENIKCFCMKVEEWNGKVVFLHEIIPGSTNKSYG 772
Query: 833 FETAKREGVPETIIQRAEDL 852
AK G P++++ RAEDL
Sbjct: 773 IHVAKLAGFPQSVLDRAEDL 792
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + KS++ +L R+GDFYE DA +E + + + ++P G P +
Sbjct: 13 QYMMLKSQYKEYLLFYRLGDFYELFFDDA---IETSRILNIVLTKKGNVPMCGVPFHSSE 69
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L+ L + GY + I E+++ +A+ R
Sbjct: 70 SYLNRLVKLGYKIAICEQLETSEEAKKR 97
>gi|68171124|ref|ZP_00544533.1| MutS 1 protein [Ehrlichia chaffeensis str. Sapulpa]
gi|67999449|gb|EAM86089.1| MutS 1 protein [Ehrlichia chaffeensis str. Sapulpa]
Length = 795
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Query: 657 EGSAVHNTVD---MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G V N +D MQ + L+TGPN GKS+ LR +L G VPA+ A I D
Sbjct: 593 NGKFVANDIDLSLMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAQHAHIGVIDK 652
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D+ A G S+F VEM+E +I+ T +S V++DEI RGT T G IA S+I
Sbjct: 653 VFSRVGASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVI 712
Query: 774 ETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + N+ I +TH H + L ++N M E +G+ V +++ G +S
Sbjct: 713 EQIHNVNKSRAIFATHYHELSKLDRYLENIKCFCMKVEEWNGKVVFLHEIIPGSTNKSYG 772
Query: 833 FETAKREGVPETIIQRAEDL 852
AK G P++++ RAEDL
Sbjct: 773 IHVAKLAGFPQSVLDRAEDL 792
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + KS++ +L R+GDFYE DA +E + + + ++P G P +
Sbjct: 13 QYMMLKSQYKEYLLFYRLGDFYELFFDDA---IETSRILNIVLTKKGNVPMCGVPFHSSE 69
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L+ L + GY + I E+++ +A+ R
Sbjct: 70 SYLNRLVKLGYKIAICEQLETSEEAKKR 97
>gi|320449600|ref|YP_004201696.1| DNA mismatch repair protein MutS [Thermus scotoductus SA-01]
gi|320149769|gb|ADW21147.1| DNA mismatch repair protein MutS [Thermus scotoductus SA-01]
Length = 808
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 5/196 (2%)
Query: 659 SAVHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
S V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I+
Sbjct: 563 SFVPNDLEMAHELVLVTGPNMAGKSTYLRQTALIALLAQIGSFVPAEEAVLPLFDRILTR 622
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
+ + D A G+S+F VEM E+ I+ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 623 IGASDDLAGGRSTFMVEMEEVALILKEATERSLVLLDEVGRGTSSLDGVAIATAVAEALH 682
Query: 778 NIGCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
C + +TH + +LPL ++KN A E G +++ G +S E A
Sbjct: 683 ERRCYTLFATHYFELTALPLPRLKNLHVAAKEEE---GGLTFYHQVLPGPASKSYGVEVA 739
Query: 837 KREGVPETIIQRAEDL 852
+ G+P+ +++RA+ L
Sbjct: 740 RMAGLPKEVVERAKAL 755
Score = 43.1 bits (100), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN-PFGGLRPESIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 13 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKSGKDFTTPMAGIPI 72
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + + ++V+ +A R ++ PG+
Sbjct: 73 RAFDAYAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 117
>gi|383784804|ref|YP_005469374.1| DNA mismatch repair protein [Leptospirillum ferrooxidans C2-3]
gi|383083717|dbj|BAM07244.1| putative DNA mismatch repair protein [Leptospirillum ferrooxidans
C2-3]
Length = 845
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 154/298 (51%), Gaps = 10/298 (3%)
Query: 557 GEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSS-ELQTKINILVFASMLLVIGKAL 615
G E ++ ++ + +R E+ ++A+ + LL L++ L I A L + AL
Sbjct: 506 GVERYTLPELMDFEQRIAESRSRAQQREFALLDELTTLVLSLSAQIQRMAEFLGTV-DAL 564
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSP-YWFDAAEGSAVHNTVDMQS--LFL 672
+ G++R++V P+ +DGA + NG P G+ + N ++ S L
Sbjct: 565 LSFARVGKKRQYVLPSFS---MDGAMSIT-NGRHPIVEARLMSGTFMPNDTNLGSGTFVL 620
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
LTGPN GKS+ +R + ++ G VPA+SA +P D I+ + + D +G+S+F
Sbjct: 621 LTGPNMAGKSTYMRQLALIQIMAQMGAPVPADSAVLPIVDRILTRVGANDHILEGESTFM 680
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E+ ++ TS++LV++DE+ RGT T G IA ++ E + D+I + + +TH H
Sbjct: 681 VEMKEVARVLRDATSKTLVILDEVGRGTATFDGMAIAWAVSEYIHDHIRSMTLFATHYHE 740
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ +L K + +++ G+ ++ G +S + AK GVPE +I+RA
Sbjct: 741 LHALTEKGQRFLNQSVAVRIEGGKIFFPHRISSGHSSKSYGIDVAKLAGVPEVVIERA 798
>gi|304404423|ref|ZP_07386084.1| DNA mismatch repair protein MutS [Paenibacillus curdlanolyticus
YK9]
gi|304346230|gb|EFM12063.1| DNA mismatch repair protein MutS [Paenibacillus curdlanolyticus
YK9]
Length = 909
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 12/235 (5%)
Query: 625 RKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGS-----AVHNTVDMQSLFLLTGPNGG 679
R++V P + D G + L +G P +G+ + + QS+ L+TGPN
Sbjct: 562 RRFVRPTVTD----GFDMLVEDGRHPVVEAVMDGAPYMANGTELSKESQSMLLITGPNMA 617
Query: 680 GKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739
GKS+ +R ++ G VPA+SA++P D I + + D G+S+F VEM +I+
Sbjct: 618 GKSTYMRQAALLCVMAQIGSFVPAKSATLPLVDRIFTRIGAADDLVGGQSTFMVEMKDIQ 677
Query: 740 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLK 798
+ ++RSLV+IDE+ RGT T +G IA ++IE + D IGC +VSTH H + L
Sbjct: 678 VMTEKASNRSLVIIDELGRGTSTNEGMAIAQAVIEYVHDEIGCKALVSTHFHELSHLEQS 737
Query: 799 IKNAAYKAMGTEYLDGQTVP-TWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ + + M DG V KLV G S A+ G+P++II RA L
Sbjct: 738 LSSLSNACMAVRE-DGDNVTFLRKLVPGAASSSYGVYCARLAGLPDSIIGRAYSL 791
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL-----VEYAGLNPFGGLRPESIPKAGCP 101
+ L K + LL R+GDFYE DA + + G G E IP G P
Sbjct: 11 QYLSIKEQAKDAFLLFRLGDFYEMFFEDAVLASRELEITLTGREAGGA---ERIPMCGVP 67
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L GY V I E+V+ P+ A+ R I PG+
Sbjct: 68 YHSAENYIARLIEKGYKVAICEQVEDPSAAKGVVRREIVRVVTPGT 113
>gi|146321975|ref|YP_001201686.1| DNA mismatch repair protein MutS [Streptococcus suis 98HAH33]
gi|386578921|ref|YP_006075327.1| MutS-1 protein [Streptococcus suis GZ1]
gi|189083200|sp|A4W4J7.1|MUTS_STRS2 RecName: Full=DNA mismatch repair protein MutS
gi|145692781|gb|ABP93286.1| Mismatch repair ATPase (MutS family) [Streptococcus suis 98HAH33]
gi|292559384|gb|ADE32385.1| MutS-1 protein [Streptococcus suis GZ1]
Length = 847
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 588 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 646
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 647 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 706
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 707 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 766
Query: 838 REGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSII 874
G+PE ++QRA+ I + A P PS++
Sbjct: 767 IAGMPEELLQRAD--RILQTLENQAPTAPTHPAPSVV 801
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 13 QYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELS-LTSRNKNAENPIPMAGVPYH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L G+ V I E+++ P QA R + PG+
Sbjct: 72 AAQQYIDTLVELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGT 115
>gi|384083305|ref|ZP_09994480.1| DNA mismatch repair protein MutS [gamma proteobacterium HIMB30]
Length = 860
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 148/316 (46%), Gaps = 9/316 (2%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F+T +++ ++ A ++A ++ L L + L IN L + +L L +
Sbjct: 500 ERFTTPELKTFEDKALSAESQALSRERHLFDELLNPLTDAINDLKTLAQMLAELDVLTSL 559
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTG 675
+WV P L + NG P A+ V N + QSL L+TG
Sbjct: 560 ALVASHERWVEPVLSE----SVEIQITNGRHPVIEQASTQPFVPNDTQLTTEQSLALITG 615
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GGKS+ +R +LL G VPA+ AS+ D I + + D A G+S+F VEM
Sbjct: 616 PNMGGKSTYMRQTALITLLARIGSFVPADHASVGPVDRIFTRIGASDDLAGGRSTFMVEM 675
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795
+E +I+ T +SLVL+DE+ RGT T G +A + E L L + +TH + L
Sbjct: 676 TETAAILAEATDQSLVLMDEVGRGTSTFDGLALAWASAEALARRRALTLFATHYFELTHL 735
Query: 796 PLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA 855
P +A + + Q V ++++G +S A+R GVP+ II RA Y+A
Sbjct: 736 PDNESSAFNVHLTAQVTGDQIVFLHRVMEGPTSQSYGLHVARRAGVPDEIIGRAA-AYLA 794
Query: 856 CGVNCVMIAAREQPPP 871
+ + +QP P
Sbjct: 795 -ELESQQVILNQQPTP 809
>gi|254796716|ref|YP_003081552.1| DNA mismatch repair protein MutS [Neorickettsia risticii str.
Illinois]
gi|254589940|gb|ACT69302.1| DNA mismatch repair protein MutS [Neorickettsia risticii str.
Illinois]
Length = 815
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 156/301 (51%), Gaps = 20/301 (6%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGL-----SSELQTKINILVFASMLLVIGKAL 615
++TL+++ + +A + LEL R L +SE K I A + +++
Sbjct: 505 YTTLELQNLEAQIAKANENYRKLELELFRELCEKILASESPLKEMIAAMAELDVIVS--- 561
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS---LFL 672
FA ++ +RK+V P ++D +N L+++G + F + V N + S + +
Sbjct: 562 FAEIAV--QRKYVRP-----QVDNSNELRISG-GRHPFVEQVNAFVPNDLAFTSEERVCV 613
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
LTGPN GKS+ LR ++L G VPA+SA I D + + + D+ A GKS+F
Sbjct: 614 LTGPNMAGKSTYLRQNALITVLAQMGSFVPADSAHIGVVDRVFSRIGASDNIARGKSTFM 673
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E +IV T RSLV++DE+ RGT T G IA +++E L D++ C I +TH +
Sbjct: 674 VEMMETANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYLHDSVNCKTIFATHYNE 733
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L K+ ++ + + +K+V G +S TA G+PE+II+RA +
Sbjct: 734 LCDLESKLPRMKCYSIEVKRWRDEIFLMYKVVPGRGDKSYGIHTAMLSGIPESIIRRATE 793
Query: 852 L 852
+
Sbjct: 794 I 794
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 49 LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN--PFGGLRPESIPKAGCPVVNLR 106
L+ + ++P V+ RVGDFYE DA + GL+ G + + IP G PV +
Sbjct: 13 LEVRCQYPDAVIFYRVGDFYEMFFEDAREVSALLGLHLTRRGTYKGKDIPMCGVPVSSYE 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSR 134
++ L + G V I E+++ +A+ R
Sbjct: 73 VYINKLVKLGRKVAICEQLETAEEAKKR 100
>gi|188590144|ref|YP_001921070.1| DNA mismatch repair protein MutS [Clostridium botulinum E3 str.
Alaska E43]
gi|238689654|sp|B2V1M2.1|MUTS_CLOBA RecName: Full=DNA mismatch repair protein MutS
gi|188500425|gb|ACD53561.1| DNA mismatch repair protein MutS [Clostridium botulinum E3 str.
Alaska E43]
Length = 941
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 107/202 (52%), Gaps = 4/202 (1%)
Query: 654 DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
D + N D + L L+TGPN GKS+ +R + +L+ G VPA SA+I D
Sbjct: 593 DFVSNNTALNQTD-KELLLITGPNMAGKSTYMRQVALITLMAQMGSFVPATSANISICDK 651
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ TS SLVL+DE+ RGT T G IA S+I
Sbjct: 652 IFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGTSTYDGLSIAWSVI 711
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + N+ C + +TH H + L + ++ + L V K+V+G ES
Sbjct: 712 EYITKNKNLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVVFLRKIVEGGADES 771
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +I RA ++
Sbjct: 772 YGIEVAKLAGLPENVINRAREI 793
>gi|448683150|ref|ZP_21692124.1| DNA mismatch repair protein MutS [Haloarcula japonica DSM 6131]
gi|445784135|gb|EMA34953.1| DNA mismatch repair protein MutS [Haloarcula japonica DSM 6131]
Length = 936
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 104/184 (56%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 665 LAVVTGPNMSGKSTYMRQVALICLLAQAGGFVPAKAADLPILDRVFTRVGASDDIAGGRS 724
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T+ SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 725 TFMIEMTELATILDAATADSLVLLDEVGRGTSTADGLAIARAVTEHLHDEVGAYTLFATH 784
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + +A + T DG +L G S E A GVPE++++R
Sbjct: 785 HHDLTAVAAALPSATNRHFETSREDGDVRFDHELAPGPAAASYGVEVASMAGVPESVVER 844
Query: 849 AEDL 852
+ DL
Sbjct: 845 SRDL 848
>gi|340506212|gb|EGR32403.1| hypothetical protein IMG5_084640 [Ichthyophthirius multifiliis]
Length = 1002
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 99/181 (54%), Gaps = 3/181 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GGKS+LLR C A +L G VPAE + D I + + D+ +GKS+F
Sbjct: 777 LITGPNMGGKSTLLRQTCLAVILAQIGAFVPAEKFEMSIKDRIFCRIGATDNLMEGKSTF 836
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
Q+EM E R+IV T SLVL+DE+ RGT T G CIA ++++ L + CL + STH H
Sbjct: 837 QIEMEETRNIVNEATEDSLVLLDELGRGTSTYDGVCIAYAVLKYLVEKTKCLCLFSTHYH 896
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVP--TWKLVDGICRESLAFETAKREGVPETIIQR 848
+ L + M + + Q +K V G +S A A+ G+P I++R
Sbjct: 897 LLVDEFLLYDSIQSYFMNFSFDNQQQKIHFEYKFVRGFSAKSFAVNVAQIAGLPYQIVER 956
Query: 849 A 849
A
Sbjct: 957 A 957
>gi|253752761|ref|YP_003025902.1| DNA mismatch repair protein MutS [Streptococcus suis SC84]
gi|253754586|ref|YP_003027727.1| DNA mismatch repair protein MutS [Streptococcus suis P1/7]
gi|253756519|ref|YP_003029659.1| DNA mismatch repair protein MutS [Streptococcus suis BM407]
gi|386580987|ref|YP_006077392.1| DNA mismatch repair protein MutS [Streptococcus suis JS14]
gi|386583064|ref|YP_006079468.1| DNA mismatch repair protein MutS [Streptococcus suis SS12]
gi|386589193|ref|YP_006085594.1| DNA mismatch repair protein MutS [Streptococcus suis A7]
gi|403062526|ref|YP_006650742.1| DNA mismatch repair protein MutS [Streptococcus suis S735]
gi|251817050|emb|CAZ52702.1| DNA mismatch repair protein MutS [Streptococcus suis SC84]
gi|251818983|emb|CAZ56830.1| DNA mismatch repair protein MutS [Streptococcus suis BM407]
gi|251820832|emb|CAR47598.1| DNA mismatch repair protein MutS [Streptococcus suis P1/7]
gi|319759179|gb|ADV71121.1| DNA mismatch repair protein MutS [Streptococcus suis JS14]
gi|353735210|gb|AER16220.1| DNA mismatch repair protein MutS [Streptococcus suis SS12]
gi|354986354|gb|AER45252.1| DNA mismatch repair protein MutS [Streptococcus suis A7]
gi|402809852|gb|AFR01344.1| DNA mismatch repair protein MutS [Streptococcus suis S735]
Length = 846
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 587 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 645
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 646 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 705
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 706 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 765
Query: 838 REGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSII 874
G+PE ++QRA+ I + A P PS++
Sbjct: 766 IAGMPEELLQRAD--RILQTLENQAPTAPTHPAPSVV 800
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L G+ V I E+++ P QA R + PG+
Sbjct: 71 AAQQYIDTLVELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|389857633|ref|YP_006359876.1| DNA mismatch repair protein MutS [Streptococcus suis ST1]
gi|353741351|gb|AER22358.1| DNA mismatch repair protein MutS [Streptococcus suis ST1]
Length = 846
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 587 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 645
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 646 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 705
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 706 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 765
Query: 838 REGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSII 874
G+PE ++QRA+ I + A P PS++
Sbjct: 766 IAGMPEELLQRAD--RILQTLENQAPTAPTHPAPSVV 800
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELS-LTSRNKNAKNPIPMAGGPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L G+ V I E+++ P QA R + PG+
Sbjct: 71 AAQQYIDTLVELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|430749983|ref|YP_007212891.1| DNA mismatch repair protein MutS [Thermobacillus composti KWC4]
gi|430733948|gb|AGA57893.1| DNA mismatch repair protein MutS [Thermobacillus composti KWC4]
Length = 896
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 125/244 (51%), Gaps = 15/244 (6%)
Query: 616 FAHVSEGRRRKWVFPALKD----IELDGANCL--KMNGLSPYWFDAAEGSAVHNTVDMQS 669
FA VS RR +V P + + I DG + + M G SP+ A G+ + + M
Sbjct: 554 FATVSAERR--YVRPVITEGYDLIIEDGRHPVVETMTGDSPFI---ANGTRLTSDSPM-- 606
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L+TGPN GKS+ +R ++ G VPA A IP D I + + D A G+S
Sbjct: 607 -LLITGPNMAGKSTYMRQAALLCIMAQIGCFVPARRAEIPLTDRIFTRIGAADDLAGGQS 665
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM +I+ + T RSLV+IDE+ RGT T++G IA ++IE + D IGC +VSTH
Sbjct: 666 TFMVEMRDIQIMTERATRRSLVIIDELGRGTSTSEGMAIAQAVIEYVHDRIGCKALVSTH 725
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L + + M G KLV G S A+ G+P++II+R
Sbjct: 726 FHELARLEQTLAGLSNGCMAVAEEAGTVTFLRKLVPGAAGTSYGIYCAQLAGLPDSIIER 785
Query: 849 AEDL 852
A +L
Sbjct: 786 AYEL 789
Score = 43.1 bits (100), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLRPESIPKAGCPVVN 104
+ L K + L R+GDFYE DA + + G G E IP G P +
Sbjct: 11 QYLAIKEQVKDAFLFFRLGDFYEMFFDDAILAARELEITLTGRDGGGEERIPMCGVPYHS 70
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+V+ P A+ R I PG+
Sbjct: 71 AESYIAKLIDKGYKVAICEQVEDPKAAKGVVRREIVRIVTPGT 113
>gi|427392204|ref|ZP_18886209.1| DNA mismatch repair protein MutS [Alloiococcus otitis ATCC 51267]
gi|425731610|gb|EKU94425.1| DNA mismatch repair protein MutS [Alloiococcus otitis ATCC 51267]
Length = 865
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 14/308 (4%)
Query: 550 DSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINI---LVFAS 606
D K E F T +++E + EA K+KA EL + +++ I L A
Sbjct: 483 DRKQTLANAERFVTQELKEKEKLILEAEDKSKALSYELFLDIREKVKAHIKAIQDLAKAV 542
Query: 607 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTV 665
+ + +A FA VSE + +V P+ + + G P E V N V
Sbjct: 543 AEIDVLQA-FAKVSE--KYNYVRPSY---HTESQSVSIKEGRHPVVEKVMQEQQYVPNDV 596
Query: 666 DM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
D+ Q + L+TGPN GKS+ +R + ++G G VPA+SA +P FD + + + D
Sbjct: 597 DLNDGQDILLITGPNMSGKSTYMRQLALTLIMGQMGCYVPAKSADLPIFDKVFTRIGAMD 656
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM+E + +S SL+L DEI RGT T G +A +IIE + D IG
Sbjct: 657 DLFGGQSTFMVEMNETNHALQNASSHSLLLFDEIGRGTATYDGMALAEAIIEYVHDEIGA 716
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ STH H + L ++ +G E +G V K++ G +S + A+ G+
Sbjct: 717 KTLFSTHYHELTELEDRLDRLTNVHVGAEEEEGSLVFLHKVLSGPSDKSYGVQVAQLAGL 776
Query: 842 PETIIQRA 849
P+ +I RA
Sbjct: 777 PQPVIDRA 784
>gi|146319777|ref|YP_001199489.1| DNA mismatch repair protein MutS [Streptococcus suis 05ZYH33]
gi|145690583|gb|ABP91089.1| Mismatch repair ATPase (MutS family) [Streptococcus suis 05ZYH33]
Length = 726
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 467 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 525
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 526 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 585
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 586 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 645
Query: 838 REGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSII 874
G+PE ++QRA+ I + A P PS++
Sbjct: 646 IAGMPEELLQRAD--RILQTLENQAPTAPTHPAPSVV 680
>gi|340381450|ref|XP_003389234.1| PREDICTED: DNA mismatch repair protein mutS-like [Amphimedon
queenslandica]
Length = 379
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 16/240 (6%)
Query: 622 GRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ--SLFLLTGPNGG 679
R + + P L + +G+ +NG P A + + N M+ +++TGPN G
Sbjct: 133 ARNKNYCKPVLTN---EGSVFNIINGYHPVLSSAVKAQVIPNDCKMEEHKTWIITGPNMG 189
Query: 680 GKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739
GKS+ LR +L G VPA SA I D + + + D+ G+S+F EM E
Sbjct: 190 GKSTFLRQNALIVILAQMGSFVPANSAEISVTDKVFARVGASDNLTKGQSTFYTEMIETA 249
Query: 740 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 798
I++ T S V++DEI RGT T++G IA S+IE + IGC +++TH H L
Sbjct: 250 HILSTATPASFVILDEIGRGTATSEGVAIAQSVIEYIHKAIGCRTLLATHFH---ELTET 306
Query: 799 IKNAAYKAMGTEYL------DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ N Y +G+ Y +G+ + T+K+ G S A +TA+ G+PE +++RA++L
Sbjct: 307 LSN-RYDEIGSYYTVAQPWSNGEIILTYKIEMGSTDSSYALQTARLAGLPEPVLERAQNL 365
>gi|419780651|ref|ZP_14306494.1| DNA mismatch repair protein MutS [Streptococcus oralis SK100]
gi|383185027|gb|EIC77530.1| DNA mismatch repair protein MutS [Streptococcus oralis SK100]
Length = 844
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +KN + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLKNLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLSRADKI 780
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|373450858|ref|ZP_09542813.1| DNA mismatch repair protein mutS [Wolbachia pipientis wAlbB]
gi|371931935|emb|CCE77826.1| DNA mismatch repair protein mutS [Wolbachia pipientis wAlbB]
Length = 827
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + +
Sbjct: 629 IANSINLAGIHLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHIGVIDKIFSRVGA 688
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +I+ T RSLV++DEI RGT G IA ++IE + NI
Sbjct: 689 TDNITAGYSTFMVEMIETATIINQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNIN 748
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + ++N M + G+ + ++++G+ ES AK
Sbjct: 749 KCRAIFATHYHELTKVGEYLENVKCFCMKIKEWKGEVIFLHEVIEGVADESYGIHVAKLA 808
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 809 GFPDSVLNRAREVF 822
>gi|385813211|ref|YP_005849604.1| DNA mismatch repair protein mutS [Lactobacillus helveticus H10]
gi|323465930|gb|ADX69617.1| DNA mismatch repair protein mutS [Lactobacillus helveticus H10]
Length = 858
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M S +FL+TGPN GKS+ +R + +++ G VPA+SA++P FD I
Sbjct: 580 GSYIPNDVKMDSATNIFLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSAALPIFDQI 639
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 640 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 699
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + SL + +G +G+ V K++ G +S
Sbjct: 700 YLHDKVGAKALFATHYHELTSLDETLDYLKNIHVGATEENGKLVFLHKILPGPADQSYGI 759
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 760 HVAQLAGLPCAVLREATKL 778
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 7 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHMAVD 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 66 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 106
>gi|157364284|ref|YP_001471051.1| DNA mismatch repair protein MutS [Thermotoga lettingae TMO]
gi|167012384|sp|A8F753.1|MUTS_THELT RecName: Full=DNA mismatch repair protein MutS
gi|157314888|gb|ABV33987.1| DNA mismatch repair protein MutS [Thermotoga lettingae TMO]
Length = 811
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 9/316 (2%)
Query: 541 QIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN 600
+ ++ P K V E F T +++E ++ A + + E+ + + L +K+
Sbjct: 463 HLSKIPPNYVRKQTLVNAERFITDELKEFEQKMLTAKENLERREKEIYDEICASLSSKVG 522
Query: 601 ILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA 660
+++ + L L R + P+ + DG L+ N P + +
Sbjct: 523 LIIELAEFLAQIDVLSTLAYVAIRYGYTKPSFSN---DGKLLLR-NSRHPV-VERLVDTF 577
Query: 661 VHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N ++M ++ +LTGPN GKS+ +R + S++ G VPA+ A +P FD I
Sbjct: 578 VPNDLEMDRTKNFIILTGPNMSGKSTFIRQVALVSIMAQMGSFVPADEAILPVFDRIFAK 637
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M D A GKS+F +EM+E+ IV T SL+L+DE+ RGT T G IA ++ E L
Sbjct: 638 MGIRDDIASGKSTFLIEMNEVAKIVYQATENSLILLDEVGRGTSTFDGISIAWAVSEYLQ 697
Query: 778 N-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
N I C I +TH + L K + Q + ++VDGI S E A
Sbjct: 698 NQISCKCIFATHFTELTELAKMYDGIVNKTVQVIEEKNQVIFLHRVVDGIADRSYGIEVA 757
Query: 837 KREGVPETIIQRAEDL 852
G+P IIQRA ++
Sbjct: 758 GIAGLPGEIIQRAREV 773
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + KSK+ +LL R+GDFYEA DA I+ + L + P AG P L
Sbjct: 9 QYMDIKSKYKDAILLFRLGDFYEAFFEDAEIVSKTLDLVL---THRQDAPMAGVPYHALN 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L + GY V I ++V+ P+ A+ R ++ PG+
Sbjct: 66 TYLKKLVQFGYKVAICDQVEDPSTAKGLVKREVTRIVTPGT 106
>gi|408411547|ref|ZP_11182693.1| DNA mismatch repair protein mutS [Lactobacillus sp. 66c]
gi|407874286|emb|CCK84499.1| DNA mismatch repair protein mutS [Lactobacillus sp. 66c]
Length = 857
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + M S++L+TGPN GKS+ +R + +++ G VPAE+A++P FD I
Sbjct: 587 GSYIPNDLTMDEDTSIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPAEAATLPIFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + +SRSL+L DEI RGT T G +AG+II+
Sbjct: 647 FTRIGAADDLYSGKSTFMVEMSEANDALQRASSRSLILFDEIGRGTATYDGMALAGAIIK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKTLFATHYHELTELEQTLPHLKNIHVGATQENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 767 HVAKLAGLPREVLREASKM 785
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 40 KEGT--LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPES 94
KE T + + Q KS++P L RVGDFYE DA ++E L
Sbjct: 3 KEATTPMMQQYYQIKSEYPDAFLFYRVGDFYELYEDDAIKGAQILELT-LTHRSNKSANP 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
IP AG P + + ++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 62 IPMAGVPHMAVDSYINTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|359412943|ref|ZP_09205408.1| DNA mismatch repair protein mutS [Clostridium sp. DL-VIII]
gi|357171827|gb|EHJ00002.1| DNA mismatch repair protein mutS [Clostridium sp. DL-VIII]
Length = 915
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L L+TGPN GKS+ +R + +++ G VPA SA+I D + + + D A G
Sbjct: 606 KELLLITGPNMAGKSTYMRQVALITIMAQIGSFVPASSANISICDKVFTRIGASDDLAGG 665
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + +N+ C +
Sbjct: 666 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYITKENNLRCKTL 725
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L + ++ + + + K+V+G ES E AK G+PE
Sbjct: 726 FATHYHELVKLEGILPGVKNYSVAVKKMKDSVIFLRKIVEGGADESYGIEVAKLAGLPEA 785
Query: 845 IIQRAEDLYIAC------GVNCVMIAAREQPPPSI 873
+I RA+++ + +N V A E+ ++
Sbjct: 786 VINRAKEILLDLEGENNFDINKVSAAKNEESEIAV 820
>gi|313124269|ref|YP_004034528.1| DNA mismatch repair protein muts [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|422844178|ref|ZP_16890888.1| DNA mismatch repair protein HexA [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|312280832|gb|ADQ61551.1| DNA mismatch repair protein mutS [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|325685683|gb|EGD27762.1| DNA mismatch repair protein HexA [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 856
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + M S++L+TGPN GKS+ +R + +++ G VPA+SA +P FD +
Sbjct: 587 GSYIPNDLVMDEDTSIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQV 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + +SRSLVL DEI RGT T G +AG+II+
Sbjct: 647 FTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAIIK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +GQ + K++ G +S
Sbjct: 707 YLHDKVGAKTLFATHYHELTELDETLPHLKNIHVGATEENGQLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 767 HVAKLAGLPRAVLREASSM 785
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
Q K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 QIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELT-LTHRSNKSENPIPMAGVPHMAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|190570820|ref|YP_001975178.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019654|ref|ZP_03335459.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357092|emb|CAQ54497.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994695|gb|EEB55338.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 833
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA + D I + +
Sbjct: 635 IANSINLAGIHLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHVGVIDKIFSRVGA 694
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 695 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 754
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + ++N M + G+ + ++++GI ES AK
Sbjct: 755 KCRAIFATHYHELTKVGEYLENVKCFCMKIKEWKGEVIFLHEVIEGIADESYGIHVAKLA 814
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 815 GFPDSVLNRAREVF 828
>gi|409351336|ref|ZP_11234098.1| DNA mismatch repair protein mutS [Lactobacillus equicursoris CIP
110162]
gi|407876814|emb|CCK86156.1| DNA mismatch repair protein mutS [Lactobacillus equicursoris CIP
110162]
Length = 857
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + M S++L+TGPN GKS+ +R + +++ G VPAE+A++P FD I
Sbjct: 587 GSYIPNDLTMDEDTSIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPAEAATLPIFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + +SRSL+L DEI RGT T G +AG+II+
Sbjct: 647 FTRIGAADDLYSGKSTFMVEMSEANDALQRASSRSLILFDEIGRGTATYDGMALAGAIIK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKTLFATHYHELTELEQTLPHLKNIHVGATQENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 767 HVAKLAGLPREVLREASKM 785
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 40 KEGT--LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPES 94
KE T + + Q KS++P L RVGDFYE DA ++E L
Sbjct: 3 KEATTPMMQQYYQIKSEYPDAFLFYRVGDFYELYEDDAIKGAQILELT-LTHRSNKSANP 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
IP AG P + + ++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 62 IPMAGVPHMAVDSYINTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|300811157|ref|ZP_07091669.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497861|gb|EFK32871.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 856
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + M S++L+TGPN GKS+ +R + +++ G VPA+SA +P FD +
Sbjct: 587 GSYIPNDLVMDEDTSIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQV 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + +SRSLVL DEI RGT T G +AG+II+
Sbjct: 647 FTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAIIK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +GQ + K++ G +S
Sbjct: 707 YLHDKVGAKTLFATHYHELTELDETLPHLKNIHVGATEENGQLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 767 HVAKLAGLPRAVLREASSM 785
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
Q K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 QIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELT-LTHRSNKSENPIPMAGVPHMAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|326794019|ref|YP_004311839.1| DNA mismatch repair protein mutS [Marinomonas mediterranea MMB-1]
gi|326544783|gb|ADZ90003.1| DNA mismatch repair protein mutS [Marinomonas mediterranea MMB-1]
Length = 880
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 150/298 (50%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T +++E ++ A +KA A+ +L GL +L + L +S + L +
Sbjct: 504 ERFITPELKEFEDKALSAKSKALAREKQLYEGLLDQLNEVLGELQTSSQAVAQLDLLTSF 563
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTG 675
R + P L + +G ++ G P + N +++ +SL ++TG
Sbjct: 564 AERAERLSFHCPELHN---NGGISIQA-GRHPVVESVISDPFIPNDLELNRQRSLLMITG 619
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GGKS+ +R + +LL G VPA+ ASI D I M S D A G+S+F VEM
Sbjct: 620 PNMGGKSTYMRQVAIITLLAHTGSFVPAQKASISVVDRIFTRMGSSDDLAGGRSTFMVEM 679
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS 794
+E +I+ + SLVL+DE+ RGT T G +A S +E L N + C + +TH + +
Sbjct: 680 TETANILNNASKDSLVLMDEVGRGTSTFDGLSLAWSAVEYLANQLKCYVLFATHYFELTT 739
Query: 795 LPLKIKNAAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
L ++ AA + TEY D + V ++ DG +S + A+ GVP ++I A+D
Sbjct: 740 LAEQLPQAANVHLTATEYED-EIVFMHQVHDGPASQSYGLQVAQLAGVPRSVIGNAKD 796
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQT 108
KS P ++L R+GDFYE DA E L G + IP AG P
Sbjct: 19 LKSDHPNQMLFYRMGDFYELFYEDAKRASELLDITLTARGHSGGKPIPMAGIPFHAAENY 78
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L R G SV + E+V P ++ R ++ PG+
Sbjct: 79 IARLVRMGESVVVAEQVGDPATSKGPVERQVARIVTPGT 117
>gi|374602199|ref|ZP_09675193.1| DNA mismatch repair protein mutS [Paenibacillus dendritiformis
C454]
gi|374392068|gb|EHQ63396.1| DNA mismatch repair protein mutS [Paenibacillus dendritiformis
C454]
Length = 928
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + ++L G VPA+ A +P D I + + D G+S
Sbjct: 607 MLLITGPNMAGKSTYMRQVALMAILTQMGSFVPADRAVMPIVDRIFTRIGAADDLIGGQS 666
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM +I+ + T RSLV+IDE+ RGT T++G IA ++IE + D IGC +VSTH
Sbjct: 667 TFMVEMMDIQVMTAKATRRSLVIIDELGRGTSTSEGMSIAQAVIEFVHDEIGCKALVSTH 726
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L ++ M + Q KL+ G S AK G+P++II+R
Sbjct: 727 FHELAHLEERLGGLRNVCMAVQESGNQVTFLRKLIPGAASTSYGIYCAKLAGLPDSIIRR 786
Query: 849 AEDL 852
+ DL
Sbjct: 787 SYDL 790
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ L K + +L R+GDFYE DA + + + G + IP G P
Sbjct: 10 QYLAIKQQAEDAILFFRLGDFYEMFNDDAIVAAKELEITLTGRGSSGTEDRIPMCGVPYH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L GY V I E+++ P+ A+ R I PG+
Sbjct: 70 SADSYIQRLIEKGYRVAICEQMEDPSAAKGVVRREIVRIITPGT 113
>gi|403514450|ref|YP_006655270.1| DNA mismatch repair protein MutS [Lactobacillus helveticus R0052]
gi|403079888|gb|AFR21466.1| DNA mismatch repair protein MutS [Lactobacillus helveticus R0052]
Length = 865
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M S +FL+TGPN GKS+ +R + +++ G VPA+SA++P FD I
Sbjct: 587 GSYIPNDVKMDSATNIFLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSAALPIFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 647 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + SL + +G +G+ V K++ G +S
Sbjct: 707 YLHDKVGAKALFATHYHELTSLDETLDYLKNIHVGATEENGKLVFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 767 HVAQLAGLPCAVLREATKL 785
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 14 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHMAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 73 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 113
>gi|125625247|ref|YP_001033730.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris MG1363]
gi|389855635|ref|YP_006357879.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris NZ9000]
gi|189083180|sp|A2RP10.1|MUTS_LACLM RecName: Full=DNA mismatch repair protein MutS
gi|124494055|emb|CAL99055.1| DNA mismatch repair protein mutS [Lactococcus lactis subsp.
cremoris MG1363]
gi|300072057|gb|ADJ61457.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 840
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 150/298 (50%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F + ++ E E EA K+ + +L GL +E + I L + + L +
Sbjct: 484 ERFGSQELTEIEEIMLEAREKSSSLEYDLFMGLRAETEQYIGRLQALAKTIAEIDCLQSL 543
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLL 673
++ ++ P L + G+ +++ G +A G+ V N +++ + L+
Sbjct: 544 SVVAEKQGYIRPTLTE----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLI 599
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R ++ G VPAE+A++P FDAI + + D+ G+S+F V
Sbjct: 600 TGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLPIFDAIFTRIGASDNLISGESTFMV 659
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EMSE + TSRSL++ DE+ RGT T G +A +IIE + ++IG + +TH H +
Sbjct: 660 EMSEANHAIQKATSRSLIIFDELGRGTATYDGMALAQAIIEYVHEHIGAKTLFATHYHEL 719
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
L ++ + + T +G K+ DG +S AK G+P+T+++RA+
Sbjct: 720 TDLDKELDHLDNVHVATLEQNGNVTFLHKITDGPADKSYGIHVAKIAGLPQTLLERAD 777
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AATEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|114769785|ref|ZP_01447395.1| DNA mismatch repair protein [Rhodobacterales bacterium HTCC2255]
gi|114549490|gb|EAU52372.1| DNA mismatch repair protein [alpha proteobacterium HTCC2255]
Length = 878
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 147/311 (47%), Gaps = 30/311 (9%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL----- 615
F+T+++ E + AG KA + LE+ QTK+ I+ F+ +L KAL
Sbjct: 511 FTTIELSEIETKILNAGGKALSLELEIFD------QTKLKIIEFSERILNAAKALAEIDL 564
Query: 616 -FAHVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSA----VHNTVDMQS 669
A W P +LD + K+ G P A + SA + N D+ +
Sbjct: 565 TIALADIAMSENWCRP-----KLDKSRKFKITAGRHPVVEAALQKSASGVFIANNCDLSA 619
Query: 670 -------LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
++LLTGPN GKS+ LR +L+ G VPAESA I + + + D
Sbjct: 620 GQNGDKPIWLLTGPNMAGKSTFLRQNAIIALMAQIGSFVPAESAEIGMITQLFSRVGASD 679
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GC 781
A G+S+F VEM E +I+ +LV++DEI RGT T G IA + +E L NI C
Sbjct: 680 DLARGRSTFMVEMVETAAILNQAGENALVILDEIGRGTATYDGLSIAWATLENLHNINNC 739
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + SL ++ +G + G + ++ G S + AK G+
Sbjct: 740 RALFATHYHELTSLTENLEGLMNATVGVKEWKGDIIFLHEVKKGAADRSYGVQVAKLAGI 799
Query: 842 PETIIQRAEDL 852
P+T+I+RA ++
Sbjct: 800 PQTVIRRATEV 810
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++P +L R+GDFYE DA L G IP G P +
Sbjct: 12 QFLEIKSEYPNALLFYRMGDFYELFFDDAVAAAAALDISLTKRGKHLGNDIPMCGVPHHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L R G+ V + E+++ P +A++R S+ +
Sbjct: 72 AENYLLTLIRKGFRVAVCEQLETPAEAKARGSKSV 106
>gi|150017427|ref|YP_001309681.1| DNA mismatch repair protein MutS [Clostridium beijerinckii NCIMB
8052]
gi|189030761|sp|A6LWJ5.1|MUTS_CLOB8 RecName: Full=DNA mismatch repair protein MutS
gi|149903892|gb|ABR34725.1| DNA mismatch repair protein MutS [Clostridium beijerinckii NCIMB
8052]
Length = 928
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 6/199 (3%)
Query: 662 HNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+NT QS L L+TGPN GKS+ +R + +L+ G VPA SA+I D I +
Sbjct: 597 NNTTLNQSDKELLLITGPNMAGKSTYMRQVALITLMAQIGSFVPASSANISICDKIFTRI 656
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-- 776
+ D A GKS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE +
Sbjct: 657 GASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYITG 716
Query: 777 -DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
+N+ C + +TH H + L + ++ + + + K+V+G ES E
Sbjct: 717 NENLRCKTLFATHYHELVKLEGVLPGVKNYSVAVKKMKDSVIFLRKIVEGGADESYGIEV 776
Query: 836 AKREGVPETIIQRAEDLYI 854
AK G+P+ +I RA+++ +
Sbjct: 777 AKLAGLPDDVINRAKEILL 795
>gi|419759908|ref|ZP_14286193.1| DNA mismatch repair protein MutS [Thermosipho africanus H17ap60334]
gi|407514947|gb|EKF49733.1| DNA mismatch repair protein MutS [Thermosipho africanus H17ap60334]
Length = 828
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 4/196 (2%)
Query: 661 VHNTVDMQSL---FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M SL +++TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 587 VPNDIYMDSLRRMYIITGPNMSGKSTYIRQVGLIAVMAQIGCFVPAKSAKLPIFDRIFTR 646
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D + GKS+F VEMSE+ I++ T SLVL+DE+ RGT T G IA ++ E +
Sbjct: 647 MGARDDISTGKSTFLVEMSEVALILSKATKDSLVLLDEVGRGTSTFDGISIAWAMSEYIY 706
Query: 778 N-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
N I C I +TH + L + E + V K+VDG+ S E A
Sbjct: 707 NEIKCKTIFATHFTELTELSDVYNGIKNLTIEVEETNDGIVFLHKVVDGVADRSYGIEVA 766
Query: 837 KREGVPETIIQRAEDL 852
K GVP+ +++RA+++
Sbjct: 767 KIAGVPDGVVERAKEI 782
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + K + ++L R+GDFYEA DA I+ + LN R ++ P AG P L
Sbjct: 21 QYMDIKKNYEDAIVLFRLGDFYEAFFEDAEIISKV--LNIVLTKR-QNAPMAGIPHHALD 77
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L +GY V I E+++ P+QA+ R ++ PG+
Sbjct: 78 NYLKKLVDSGYKVAICEQMEDPSQAKGIVRREVTRVITPGT 118
>gi|28210987|ref|NP_781931.1| DNA mismatch repair protein MutS [Clostridium tetani E88]
gi|44888200|sp|Q895H2.1|MUTS_CLOTE RecName: Full=DNA mismatch repair protein MutS
gi|28203426|gb|AAO35868.1| DNA mismatch repair protein mutS [Clostridium tetani E88]
Length = 881
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 7/202 (3%)
Query: 658 GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
GS V N M + + L+TGPN GKS+ +R + +++ G VPA+ ASI D
Sbjct: 591 GSFVANDTTMDTEDNQMLLITGPNMAGKSTYMRQVALITIMAQIGSFVPAKEASISLCDK 650
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D + GKS+F VEM E+ +I+ TS+SL+++DE+ RGT T G IA ++I
Sbjct: 651 IFTRIGASDDLSAGKSTFMVEMWEVSNILKNATSKSLIILDEVGRGTSTFDGLSIAWAVI 710
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + N+ + +TH H + L KIK ++ + +D V K+++G +S
Sbjct: 711 EYICNNKNLRSKTLFATHYHELIQLENKIKGVKNYSVSVKEMDKDIVFLRKIIEGGADQS 770
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +I RA+++
Sbjct: 771 YGIEVAKLAGLPEDVIIRAKEI 792
>gi|407772640|ref|ZP_11119942.1| DNA mismatch repair protein MutS [Thalassospira profundimaris
WP0211]
gi|407284593|gb|EKF10109.1| DNA mismatch repair protein MutS [Thalassospira profundimaris
WP0211]
Length = 907
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 24/306 (7%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T+++ E + +AG +A A LEL L S + K + + + L G + A ++
Sbjct: 535 FTTVELSELESKVSKAGDQALALELELFDELVSAVLAKADDIAKCASALA-GLDVSAALA 593
Query: 621 E-GRRRKWVFPALKD---IELDGAN------CLKMNGLSPYWFDAAEGSAVHNTV---DM 667
E R + + P + + ++ L+ NG +P+ V N D
Sbjct: 594 ELARDQGCIRPNIDNSLAFDITAGRHPVVEAALRENGDAPF---------VANDCRLEDE 644
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
QSL+L+TGPN GKS+ LR ++L G VPA A I D + + + D A G
Sbjct: 645 QSLWLITGPNMAGKSTFLRQNALIAVLAQIGAFVPAAKAHIGVIDRLFSRVGAADDLARG 704
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVS 786
+S+F VEM E SI+ T RSLV++DEI RGT T G IA +++E L I C G+ +
Sbjct: 705 RSTFMVEMVETASILNQATDRSLVILDEIGRGTATFDGLSIAWAVVENLHEINQCRGLFA 764
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + +L K+K+ + M + G+ V ++ G S A+ G+P+ +I
Sbjct: 765 THYHELTALAAKLKHLSCHTMLIKEWQGEVVFLHEVGAGSADRSYGIHVAQLAGLPKPVI 824
Query: 847 QRAEDL 852
+RAE +
Sbjct: 825 KRAEQV 830
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 46 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVV 103
+ L+ K ++ +L R+GDFYE DA E L G + IP AG PV
Sbjct: 27 MQFLEIKEQYQDCLLFYRMGDFYELFFDDAVKAAEALDIALTKRGKHQGNEIPMAGVPVH 86
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
+ L L R G+ V + E+++ P +A+ R ++ +
Sbjct: 87 SHETYLQRLIRKGFRVAVCEQMEDPAEAKKRGAKSV 122
>gi|115299205|sp|Q5UYI1.2|MUTS2_HALMA RecName: Full=DNA mismatch repair protein MutS 2
Length = 947
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 654 LAVVTGPNMSGKSTYMRQVALICLLAQSGSFVPAKAADLPILDRVFTRVGASDDIAGGRS 713
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 714 TFMIEMTELATILDAATENSLVLLDEVGRGTSTADGLAIARAVTEYLHDEVGAYTLFATH 773
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + A + T DG +L G S E A GVP+++++R
Sbjct: 774 HHDLTAVAAALSGATNRHFETSREDGDVRFDHELAPGPAAASYGVEVASMAGVPDSVVER 833
Query: 849 AEDL 852
+ DL
Sbjct: 834 SRDL 837
>gi|433448798|ref|ZP_20411663.1| DNA mismatch repair protein MutS [Weissella ceti NC36]
gi|429539187|gb|ELA07224.1| DNA mismatch repair protein MutS [Weissella ceti NC36]
Length = 878
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 12/315 (3%)
Query: 546 KPAVDSKGRK---VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINIL 602
K D RK V E F T +++E + EA AK+ +L + ++T I L
Sbjct: 476 KLEADRYNRKQTLVNAERFITPELKEHEQLILEAEAKSSELEYQLFSEVRETIKTNIKRL 535
Query: 603 VFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAV 661
+ L L A R +V P L D ++ NG P S V
Sbjct: 536 QKLAGALAELDVLQALADVAERYDFVRPTLADKQMIAIK----NGRHPVVEKVLGHQSYV 591
Query: 662 HNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
N + M +++ L+TGPN GKS+ +R + ++ G VPA+SA++P FD I +
Sbjct: 592 ANDITMREDETIQLITGPNMSGKSTYMRQLALTVVMAQIGSFVPADSATLPIFDQIFTRI 651
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD- 777
+ D G S+F VEM+E + + T +SL+L DE+ RGT T G +A +IIE +
Sbjct: 652 GAADDLISGNSTFMVEMAEANTALQYATPQSLILFDELGRGTATYDGMALAQAIIEHVHA 711
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
+ + STH H + SL ++ + +G +GQ + + K++ G +S AK
Sbjct: 712 HTKAKTLFSTHYHELTSLDTELPHLKNIHVGATEENGQLIFSHKILAGPADQSYGINVAK 771
Query: 838 REGVPETIIQRAEDL 852
G+P+T+I RA D+
Sbjct: 772 LAGLPDTLITRASDI 786
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K+++P L R+GDFYE DA + L+E L IP AG P
Sbjct: 16 KIKAQYPDAFLFYRLGDFYELFNDDAVLGSQLLELT-LTQRNKKSDNPIPMAGVPHHAAP 74
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L GY V IVE+++ +A R + PG+
Sbjct: 75 NYIDILVDKGYKVAIVEQLEDAAEAEGMVKRDVVQLVTPGT 115
>gi|307172014|gb|EFN63608.1| Probable DNA mismatch repair protein Msh6 [Camponotus floridanus]
Length = 1117
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 152/325 (46%), Gaps = 12/325 (3%)
Query: 539 EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTK 598
E ++K++ P + + ++ G + + T + +E L R + +L R + ++ K
Sbjct: 762 ESRVKKVGPGYELQSQRKGFKRYYTAEAKELLARQINTEEHRDKVLKDLNRRIFAQFSEK 821
Query: 599 INILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKM-NGLSPYWF--DA 655
++ A + L + R P + D LDG +K+ +G P +
Sbjct: 822 YDMWHRAIYKVATMDVLISLADYARNGDMCIPEIHD-GLDGEIFIKIRDGKHPCIISDNF 880
Query: 656 AEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
+ T D SL +LTGPN GGKS+L+R + +++ G VPA S I D I
Sbjct: 881 IPNDTLLATDDTASLMILTGPNMGGKSTLMRQVGLITIMAQIGSYVPASSCCITLVDRIF 940
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VE++E +++ T SLVL+DE+ RGT T GT IA S+++
Sbjct: 941 TRLGANDDILTGQSTFLVELNETATMLQHATPYSLVLLDELGRGTSTYDGTAIAASVVDA 1000
Query: 776 LDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG-------TEYLDGQTVP-TWKLVDGIC 827
L + C + STH H + K M E + +TV +KL +G C
Sbjct: 1001 LTKLKCRTLFSTHYHSLVEDYKTNKEVTLAHMACMVETGEEENVSEETVTFLYKLSEGAC 1060
Query: 828 RESLAFETAKREGVPETIIQRAEDL 852
+S F A+ G+P I ++A ++
Sbjct: 1061 PKSYGFNAARLAGIPSIITKKAHEI 1085
>gi|448648844|ref|ZP_21679909.1| DNA mismatch repair protein MutS [Haloarcula californiae ATCC
33799]
gi|445774588|gb|EMA25604.1| DNA mismatch repair protein MutS [Haloarcula californiae ATCC
33799]
Length = 947
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 654 LAVVTGPNMSGKSTYMRQVALICLLAQSGSFVPAKAADLPILDRVFTRVGASDDIAGGRS 713
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 714 TFMIEMTELATILDAATENSLVLLDEVGRGTSTADGLAIARAVTEYLHDEVGAYTLFATH 773
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + A + T DG +L G S E A GVP+++++R
Sbjct: 774 HHDLTAVAAALSGATNRHFETSREDGDVRFDHELAPGPAAASYGVEVASMAGVPDSVVER 833
Query: 849 AEDL 852
+ DL
Sbjct: 834 SRDL 837
>gi|448638811|ref|ZP_21676481.1| DNA mismatch repair protein MutS [Haloarcula sinaiiensis ATCC
33800]
gi|445763143|gb|EMA14346.1| DNA mismatch repair protein MutS [Haloarcula sinaiiensis ATCC
33800]
Length = 947
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 654 LAVVTGPNMSGKSTYMRQVALICLLAQSGSFVPAKAADLPILDRVFTRVGASDDIAGGRS 713
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 714 TFMIEMTELATILDAATENSLVLLDEVGRGTSTADGLAIARAVTEYLHDEVGAYTLFATH 773
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + A + T DG +L G S E A GVP+++++R
Sbjct: 774 HHDLTAVAAALSGATNRHFETSREDGDVRFDHELAPGPAAASYGVEVASMAGVPDSVVER 833
Query: 849 AEDL 852
+ DL
Sbjct: 834 SRDL 837
>gi|227894650|ref|ZP_04012455.1| MutS protein [Lactobacillus ultunensis DSM 16047]
gi|227863545|gb|EEJ70966.1| MutS protein [Lactobacillus ultunensis DSM 16047]
Length = 866
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M + +FL+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 588 GSYIPNDVKMDTGTDIFLITGPNMSGKSTYMRQMALIAIMAQIGSFVPADSADLPVFDQI 647
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 648 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 707
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 708 YLHDKVGAKALFATHYHELTDLDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 767
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 768 HVAQLAGLPRAVLREATKL 786
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 114
>gi|302024621|ref|ZP_07249832.1| DNA mismatch repair protein MutS [Streptococcus suis 05HAS68]
gi|330833728|ref|YP_004402553.1| DNA mismatch repair protein MutS [Streptococcus suis ST3]
gi|329307951|gb|AEB82367.1| DNA mismatch repair protein MutS [Streptococcus suis ST3]
Length = 846
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 587 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 645
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 646 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 705
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 706 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 765
Query: 838 REGVPETIIQRAE 850
G+PE ++QRA+
Sbjct: 766 IAGMPEELLQRAD 778
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L G+ V I E+++ P QA R + PG+
Sbjct: 71 AAQQYIDTLVELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|423720505|ref|ZP_17694687.1| DNA mismatch repair protein mutS [Geobacillus thermoglucosidans
TNO-09.020]
gi|383366560|gb|EID43850.1| DNA mismatch repair protein mutS [Geobacillus thermoglucosidans
TNO-09.020]
Length = 864
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 107/190 (56%), Gaps = 9/190 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L L+TGPN GKS+ +R I +++ G VPA+ A +P FD + + + D G
Sbjct: 599 RELLLITGPNMSGKSTYMRQIALTAIMAQIGCFVPADKAVLPIFDQVFTRIGAADDLVSG 658
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R+ + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 659 QSTFMVEMLEARNAIVHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFS 718
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + SLP K+KN A+ +G+ V K+ +G +S A+ G+P
Sbjct: 719 THYHELTDLEQSLP-KLKNVHVSAVEE---NGKVVFLHKIEEGPADQSYGIHVAELAGLP 774
Query: 843 ETIIQRAEDL 852
++I+RAE++
Sbjct: 775 SSLIRRAEEI 784
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+++P L R+GDFYE DA + L G E +P G P +
Sbjct: 10 QYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AQGYIEQLISKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|223933229|ref|ZP_03625220.1| DNA mismatch repair protein MutS [Streptococcus suis 89/1591]
gi|386585132|ref|YP_006081535.1| DNA mismatch repair protein MutS [Streptococcus suis D9]
gi|223898159|gb|EEF64529.1| DNA mismatch repair protein MutS [Streptococcus suis 89/1591]
gi|353737278|gb|AER18287.1| DNA mismatch repair protein MutS [Streptococcus suis D9]
Length = 846
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 587 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 645
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 646 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 705
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 706 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 765
Query: 838 REGVPETIIQRAE 850
G+PE ++QRA+
Sbjct: 766 IAGMPEELLQRAD 778
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L G+ V I E+++ P QA R + PG+
Sbjct: 71 AAQQYIDTLVELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|336235959|ref|YP_004588575.1| DNA mismatch repair protein mutS [Geobacillus thermoglucosidasius
C56-YS93]
gi|335362814|gb|AEH48494.1| DNA mismatch repair protein mutS [Geobacillus thermoglucosidasius
C56-YS93]
Length = 864
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 107/190 (56%), Gaps = 9/190 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L L+TGPN GKS+ +R I +++ G VPA+ A +P FD + + + D G
Sbjct: 599 RELLLITGPNMSGKSTYMRQIALTAIMAQIGCFVPADKAVLPIFDQVFTRIGAADDLVSG 658
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R+ + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 659 QSTFMVEMLEARNAIVHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFS 718
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + SLP K+KN A+ +G+ V K+ +G +S A+ G+P
Sbjct: 719 THYHELTDLEQSLP-KLKNVHVSAVEE---NGKVVFLHKIEEGPADQSYGIHVAELAGLP 774
Query: 843 ETIIQRAEDL 852
++I+RAE++
Sbjct: 775 SSLIRRAEEI 784
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+++P L R+GDFYE DA + L G E +P G P +
Sbjct: 10 QYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AQGYIEQLISKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|379011551|ref|YP_005269363.1| DNA mismatch repair protein MutS1 [Acetobacterium woodii DSM 1030]
gi|375302340|gb|AFA48474.1| DNA mismatch repair protein MutS1 [Acetobacterium woodii DSM 1030]
Length = 881
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q + ++TGPN GKS+ +R + +LL G VPA+SASI D I + + D A
Sbjct: 617 DDQRMLIITGPNMAGKSTFIRQVAIITLLAQIGSFVPADSASIGVVDRIFTRVGASDDLA 676
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
G+S+F VEM+E+ +I+ T+RSLV++DEI RGT T G IA +++E L D+IG
Sbjct: 677 SGQSTFMVEMTEVANILKNATNRSLVILDEIGRGTSTFDGISIAWAVVEYLHNEDSIGAK 736
Query: 783 GIVSTHLHGIFSL-PLK--IKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
+ +TH H + L LK IKN + + T DG + K++ G +S E AK
Sbjct: 737 TLFATHYHELTELETLKPGIKNFSIRLKDTP--DG-VIFLRKIIPGPADQSYGIEVAKLA 793
Query: 840 GVPETIIQRAEDL--YIACGVNCVMIAAREQPPPSIIG 875
G P + +RA+++ ++ G + + PP ++G
Sbjct: 794 GFPVAVTRRAQEILGHLESGEDTYRQELLVKEPPVLVG 831
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ LQ + P +L R+GDFYE DA +E A GL E P G P
Sbjct: 10 QYLQIHEEVPDALLFFRLGDFYEMFFDDALTASRELEIALTGRDCGLE-ERAPMCGVPHH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L GY V I E+V+ P A+ R I PG+
Sbjct: 69 AAQNYITRLVEKGYKVAICEQVEDPKDAKGIVRREIIRIISPGT 112
>gi|55379528|ref|YP_137378.1| DNA mismatch repair protein MutS [Haloarcula marismortui ATCC
43049]
gi|55232253|gb|AAV47672.1| DNA mismatch repair protein MutS [Haloarcula marismortui ATCC
43049]
Length = 964
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 671 LAVVTGPNMSGKSTYMRQVALICLLAQSGSFVPAKAADLPILDRVFTRVGASDDIAGGRS 730
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 731 TFMIEMTELATILDAATENSLVLLDEVGRGTSTADGLAIARAVTEYLHDEVGAYTLFATH 790
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + A + T DG +L G S E A GVP+++++R
Sbjct: 791 HHDLTAVAAALSGATNRHFETSREDGDVRFDHELAPGPAAASYGVEVASMAGVPDSVVER 850
Query: 849 AEDL 852
+ DL
Sbjct: 851 SRDL 854
>gi|313884208|ref|ZP_07817974.1| DNA mismatch repair protein MutS [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620655|gb|EFR32078.1| DNA mismatch repair protein MutS [Eremococcus coleocola
ACS-139-V-Col8]
Length = 866
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L LLTGPN GKS+ +R + A +L G VPA+ A +P D I + S D + G+S
Sbjct: 607 LLLLTGPNMSGKSTFMRQVAYAVILNQIGSFVPAKLAKLPIVDKIFTRIGSADDISRGQS 666
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E + +SRSL+L DEI RGT T G +A IIE + D + L I STH
Sbjct: 667 TFMVEMMETNEALQEASSRSLLLFDEIGRGTATYDGMALAQGIIEYIADKVRALTIFSTH 726
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L + N +G +G+ + K+ DG +S A+ G+PE++IQ
Sbjct: 727 YHELTNLATESSNIRNIHVGASEKNGELIFLHKIFDGPADKSYGIHVARLAGLPESLIQN 786
Query: 849 AE 850
++
Sbjct: 787 SQ 788
>gi|407768113|ref|ZP_11115492.1| DNA mismatch repair protein MutS [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407288826|gb|EKF14303.1| DNA mismatch repair protein MutS [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 907
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 153/306 (50%), Gaps = 24/306 (7%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T+++ E + +AG +A A LEL L + + + + + L G + A ++
Sbjct: 535 FTTVELSELESKVSKAGDQALALELELFDSLVTGVLEHADAIARCAQALA-GLDVSAALA 593
Query: 621 E-GRRRKWVFPALKD---IELDGAN------CLKMNGLSPYWFDAAEGSAVHNTVDM--- 667
E R + + P + D ++ G L+ NG SP+ V N +
Sbjct: 594 ELARDQVCIRPTIDDSLAFDIRGGRHPVVEAALRENGDSPF---------VANDCRLEGE 644
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
QSL+L+TGPN GKS+ LR ++L G VPAE+A I D + + + D A G
Sbjct: 645 QSLWLITGPNMAGKSTFLRQNALIAVLAQIGAFVPAETAHIGVIDRLFSRVGAADDLARG 704
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVS 786
+S+F VEM E +I+ + RSLV++DEI RGT T G IA +++E L + C G+ +
Sbjct: 705 RSTFMVEMVETAAILNQASDRSLVILDEIGRGTATFDGLSIAWAVVENLHEVNKCRGLFA 764
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + +L K+ + + M + G+ V ++ G S A+ G+P+ +I
Sbjct: 765 THYHELTALAAKLAHLSCHTMLIKEWQGEVVFLHEVGAGSADRSYGIHVAQLAGLPKPVI 824
Query: 847 QRAEDL 852
+RAE +
Sbjct: 825 KRAEQV 830
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K ++ +L R+GDFYE DA E L G + IP AG PV +
Sbjct: 28 QFLEIKEQYQDCLLFYRMGDFYELFFDDAVKAAEALDIALTKRGKHQGNEIPMAGVPVHS 87
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L R G+ V + E+++ P +A+ R ++ +
Sbjct: 88 HETYLQRLIRKGFRVAVCEQMEDPAEAKKRGAKSV 122
>gi|336113900|ref|YP_004568667.1| DNA mismatch repair protein MutS [Bacillus coagulans 2-6]
gi|335367330|gb|AEH53281.1| DNA mismatch repair protein MutS [Bacillus coagulans 2-6]
Length = 858
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 7/189 (3%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R I +L G VPA A +P FD I + + D G
Sbjct: 594 REILLITGPNMSGKSTYMRQIALTVILAQIGCFVPAREAELPVFDRIFTRIGAADDLISG 653
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E ++ + T RSL+L DEI RGT T G +A ++IE + D IG + S
Sbjct: 654 QSTFMVEMLEAKNAIANATERSLILFDEIGRGTSTYDGMALAQAMIEYIHDEIGAKTLFS 713
Query: 787 THLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
TH H + +L K++N AM +G+ V K+ +G +S AK G+PE
Sbjct: 714 THYHELTALSADLGKLQNVHVTAMEQ---NGKVVFLHKIKEGPADKSYGIHVAKLAGLPE 770
Query: 844 TIIQRAEDL 852
+I+RAE +
Sbjct: 771 QVIRRAEKI 779
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ LQ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 4 QYLQVKAEYQDAFLFFRLGDFYEMFFEDAIKASQELEITLTSRDGGGDEKIPMCGVPYHS 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P A+ R + PG+
Sbjct: 64 ASTYIEQLIDKGYKVAICEQMEDPKLAKGVVKREVIQLITPGT 106
>gi|429963195|gb|ELA42739.1| hypothetical protein VICG_00054 [Vittaforma corneae ATCC 50505]
Length = 985
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 109/187 (58%), Gaps = 13/187 (6%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
++ L+TGPN GGKS+ LRSIC +L G+ V +S +P FD I + + DS A G
Sbjct: 795 HNITLVTGPNMGGKSTFLRSICLNIILAQMGMGVLCKSMKLPVFDRIFTRIGASDSLARG 854
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVST 787
+S+F VEM+E I+ +T S V++DE+ RGT T G IA ++++ L +GC+ + ST
Sbjct: 855 ESTFMVEMNEASKILNQSTRESFVIMDELGRGTSTRDGEAIARAVLDYLKTVGCMCLFST 914
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEY----LDGQTVP-TWKLVDGICRESLAFETAKREGVP 842
H H + ++N Y+ + Y LD + + +K+ +G+C +S A+ G+P
Sbjct: 915 HYHKL------VEN--YEDVDKSYVGCKLDQRDITFLYKMQEGVCGDSHGLYIARMAGIP 966
Query: 843 ETIIQRA 849
+ I++RA
Sbjct: 967 DEIVERA 973
>gi|418158429|ref|ZP_12795140.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA16833]
gi|353820505|gb|EHE00689.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA16833]
Length = 717
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 460 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 519
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 520 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 579
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 580 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 639
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 640 AGLPADLLARADKI-----LTQLENQGTESPPP 667
>gi|118443496|ref|YP_878178.1| DNA mismatch repair protein MutS [Clostridium novyi NT]
gi|166232119|sp|A0Q0M6.1|MUTS_CLONN RecName: Full=DNA mismatch repair protein MutS
gi|118133952|gb|ABK60996.1| DNA mismatch repair protein MutS [Clostridium novyi NT]
Length = 909
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 105/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +L+ G VPA+ A I D I + + D A G
Sbjct: 607 HQLLLITGPNMAGKSTYMRQVALITLMAQIGSFVPAKEAEIVICDKIFTRIGASDDLARG 666
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA ++IE + +N+ +
Sbjct: 667 KSTFMVEMWEVANILNNATNKSLILLDEVGRGTSTYDGLSIAWAVIEYICKDNNLKSKTL 726
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + SL KIK ++ + +D + K+++G ES E AK G+P
Sbjct: 727 FATHYHELTSLEGKIKGVKNYSIAVKKVDDDIIFLRKIIEGGADESYGIEVAKLAGIPSV 786
Query: 845 IIQRAEDL 852
+ RA+++
Sbjct: 787 VTNRAKEI 794
>gi|242044644|ref|XP_002460193.1| hypothetical protein SORBIDRAFT_02g024370 [Sorghum bicolor]
gi|241923570|gb|EER96714.1| hypothetical protein SORBIDRAFT_02g024370 [Sorghum bicolor]
Length = 638
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 114/207 (55%), Gaps = 12/207 (5%)
Query: 656 AEGSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
+GS V N V + S +LTGPN GGKS+LLR +C +L G VPAE+ +
Sbjct: 363 GKGSFVPNDVKIGGSGNPSFIVLTGPNMGGKSTLLRQVCLTIILAQIGADVPAENLELSL 422
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
D I + M + D G+S+F VE+ E S++++ T SLV++DE+ RGT T+ G IA
Sbjct: 423 VDRIFVRMGARDHIMAGQSTFLVELEETASVLSSATKNSLVVLDELGRGTSTSDGQAIAA 482
Query: 771 SIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-----QTVPTWKLVD 824
S++E L + CLG+ STH H + ++ K + M + ++G + ++L
Sbjct: 483 SVLEYLVHQVQCLGLFSTHYHRL-AMERKDTKVSLCHMACQVVEGEGGLEEVTFLYRLTP 541
Query: 825 GICRESLAFETAKREGVPETIIQRAED 851
G C +S A+ G+P +++QRA +
Sbjct: 542 GACPKSYGVNVARLAGIPTSVLQRANE 568
>gi|226229317|ref|YP_002763423.1| DNA mismatch repair protein MutS [Gemmatimonas aurantiaca T-27]
gi|226092508|dbj|BAH40953.1| DNA mismatch repair protein MutS [Gemmatimonas aurantiaca T-27]
Length = 912
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 153/317 (48%), Gaps = 13/317 (4%)
Query: 557 GEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN--ILVFASMLLVIGKA 614
G E + T ++E E+ A + +++ EL L ++ +I V + + A
Sbjct: 521 GAERYVTPALKEYEEKVLNAAERIESRERELFETLRRDVGVQITRWQQVARRVATIDVLA 580
Query: 615 LFAHVSEGRRRKWVFPALKD-IELD---GANCLKMNGLSPYWFDAAEGSAVHNTVDMQSL 670
FA V+E R ++V P L D LD G + + ++ F + + T D Q L
Sbjct: 581 SFADVAE--REQYVRPVLHDGFALDIRAGRHPVVERMMAREKFIPND---LQFTEDAQ-L 634
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
+LTGPN GKS++LR I L+ G+ VPA A +P D + + + D+ G+S+
Sbjct: 635 IVLTGPNMAGKSTILRQIGLIQLMAQVGMYVPAHEAHLPIVDRLFTRVGASDNLVRGQST 694
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHL 789
F VEMSE +I+ T RSLVL+DEI RGT T G IA S+ E L D IGC + +TH
Sbjct: 695 FMVEMSETSAILHTATKRSLVLLDEIGRGTSTYDGVSIAWSVSEHLHDGIGCKTVFATHY 754
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + L ++ + + Q + +L+ G S E + G+P +I RA
Sbjct: 755 HELTQLANELSGVRNFTVAVREVGDQVLFLHRLIPGGADRSYGIEVGRLAGLPAPVIARA 814
Query: 850 EDLYIACGVNCVMIAAR 866
+++ +AAR
Sbjct: 815 KEVLALLEGEGEQMAAR 831
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN----PFGGLRPESIPKAG 99
L + + K++ +L R+GDFYE DA GL GG +P AG
Sbjct: 8 LMQQYREIKARHQDAILFFRMGDFYEMFYEDAETASRAIGLTLTARNNGG--AAEVPLAG 65
Query: 100 CPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLV 154
PV + L L GY V I E+V+ P A+ R + PG+ + L+
Sbjct: 66 IPVKAAAEYLRRLVSQGYRVAICEQVEDPKLAKGLVKREVVETITPGAAFADDLL 120
>gi|405760048|ref|YP_006700644.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPNA45]
gi|404276937|emb|CCM07423.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPNA45]
Length = 844
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|312111577|ref|YP_003989893.1| DNA mismatch repair protein MutS [Geobacillus sp. Y4.1MC1]
gi|311216678|gb|ADP75282.1| DNA mismatch repair protein MutS [Geobacillus sp. Y4.1MC1]
Length = 864
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 107/190 (56%), Gaps = 9/190 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L L+TGPN GKS+ +R I +++ G VPA+ A +P FD + + + D G
Sbjct: 599 RELLLITGPNMSGKSTYMRQIALTAIMAQIGCFVPADKAVLPIFDQVFTRIGAADDLVSG 658
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R+ + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 659 QSTFMVEMLEARNAIVHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFS 718
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + SLP K+KN A+ +G+ V K+ +G +S A+ G+P
Sbjct: 719 THYHELTDLEQSLP-KLKNVHVSAVEE---NGKVVFLHKIEEGPADQSYGIHVAELAGLP 774
Query: 843 ETIIQRAEDL 852
++I+RAE++
Sbjct: 775 SSLIRRAEEI 784
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+++P L R+GDFYE DA + L G E +P G P +
Sbjct: 10 QYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AQGYIEQLISKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|395240975|ref|ZP_10417997.1| DNA mismatch repair protein mutS [Lactobacillus gigeriorum CRBIP
24.85]
gi|394475483|emb|CCI87974.1| DNA mismatch repair protein mutS [Lactobacillus gigeriorum CRBIP
24.85]
Length = 868
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 113/202 (55%), Gaps = 10/202 (4%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N ++M +++L+TGPN GKS+ +R + +++ G VPA+ A +P FD I
Sbjct: 588 GSYIPNDIEMDEDTNIYLITGPNMSGKSTYMRQMALIAVMAQVGSFVPADEAELPIFDQI 647
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T+RSLVL DEI RGT T G +AG+I++
Sbjct: 648 FTRIGAADDLISGQSTFMVEMSEANEALQYATNRSLVLFDEIGRGTATYDGMALAGAIVK 707
Query: 775 TL-DNIGCLGIVSTHLH---GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
L D +G + +TH H G+ + +K+KN +G +G+ + K++ G +S
Sbjct: 708 YLHDKVGAKTLFATHFHELTGLETSLIKLKNI---HVGATEENGKLIFLHKILPGPADQS 764
Query: 831 LAFETAKREGVPETIIQRAEDL 852
A+ G+P +++ AE L
Sbjct: 765 YGIHVAQLAGLPNKVLREAEKL 786
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L +P AG P +
Sbjct: 15 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQLLELT-LTHRSNKSENPVPMAGVPHHAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVAICEQLEDPKKAQGMVKRGIVQLITPGT 114
>gi|291294833|ref|YP_003506231.1| DNA mismatch repair protein MutS [Meiothermus ruber DSM 1279]
gi|290469792|gb|ADD27211.1| DNA mismatch repair protein MutS [Meiothermus ruber DSM 1279]
Length = 853
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L +LTGPN GKS+ LR +LL G VPAESA++P FD I + + D A G+S
Sbjct: 611 LLILTGPNMAGKSTYLRQTALIALLAQVGSFVPAESATLPLFDRIYTRIGASDDIAGGRS 670
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E+ I+ TS+SLVL+DEI RGT T G +A + E L D + + +TH
Sbjct: 671 TFMVEMDELAGILQGATSKSLVLLDEIGRGTSTYDGLALAWAACEYLHDQVRAYTLFATH 730
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
+ +LPL++ A + + G V +++ G +S E A+ G+P+ ++QR
Sbjct: 731 YFELTALPLRMAAARNAHVAAKEEAGGLVFYHQVLPGPASQSYGLEVARLAGLPQAVLQR 790
Query: 849 A 849
A
Sbjct: 791 A 791
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN-PFGGLRPESIPKAGCPVVNL 105
+ ++ + +P +LL +VGDFYEA G DA L L + + P AG PV ++
Sbjct: 20 QYVELRDAYPDYLLLFQVGDFYEAFGEDAERLSRALNLTLTHKTAKDFTTPMAGIPVRSV 79
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L+ L + G+ V + ++V+ +A R ++ PG+
Sbjct: 80 DVHLEKLLKLGFRVAVADQVELAEEADKLVRREVTQLLTPGT 121
>gi|419496255|ref|ZP_14035969.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47461]
gi|133950344|gb|ABO44019.1| MutS [Streptococcus pneumoniae]
gi|379591755|gb|EHZ56575.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47461]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|421303752|ref|ZP_15754413.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17484]
gi|395898169|gb|EJH09114.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17484]
Length = 835
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|387627221|ref|YP_006063397.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae INV104]
gi|417694940|ref|ZP_12344124.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47901]
gi|444382913|ref|ZP_21181110.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PCS8106]
gi|444384246|ref|ZP_21182342.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PCS8203]
gi|301795007|emb|CBW37471.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae INV104]
gi|332198889|gb|EGJ12970.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47901]
gi|444250844|gb|ELU57319.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PCS8106]
gi|444252900|gb|ELU59360.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PCS8203]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTENPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|148984373|ref|ZP_01817661.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP3-BS71]
gi|387758237|ref|YP_006065216.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae OXC141]
gi|418233059|ref|ZP_12859642.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA07228]
gi|418236186|ref|ZP_12862754.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19690]
gi|419480894|ref|ZP_14020695.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19101]
gi|419500593|ref|ZP_14040284.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47597]
gi|147923150|gb|EDK74264.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP3-BS71]
gi|301800826|emb|CBW33481.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae OXC141]
gi|353884637|gb|EHE64432.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA07228]
gi|353892418|gb|EHE72166.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19690]
gi|379569060|gb|EHZ34034.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19101]
gi|379597705|gb|EHZ62502.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47597]
gi|429316856|emb|CCP36581.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SPN034156]
gi|429320208|emb|CCP33545.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SPN034183]
gi|429322027|emb|CCP35519.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SPN994039]
gi|429323847|emb|CCP31560.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SPN994038]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|421241542|ref|ZP_15698084.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2080913]
gi|395606203|gb|EJG66311.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2080913]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|418077288|ref|ZP_12714517.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47502]
gi|353745462|gb|EHD26131.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47502]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|225861895|ref|YP_002743404.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230664|ref|ZP_06964345.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254472|ref|ZP_06978058.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298501576|ref|YP_003723516.1| DNA mismatch repair protein [Streptococcus pneumoniae TCH8431/19A]
gi|417313537|ref|ZP_12100246.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04375]
gi|418083897|ref|ZP_12721089.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44288]
gi|418086061|ref|ZP_12723236.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47281]
gi|418094876|ref|ZP_12731999.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA49138]
gi|418101555|ref|ZP_12738634.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 7286-06]
gi|418142609|ref|ZP_12779417.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13455]
gi|418151584|ref|ZP_12788326.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA14798]
gi|418153852|ref|ZP_12790586.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA16121]
gi|418224288|ref|ZP_12850923.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 5185-06]
gi|418228575|ref|ZP_12855188.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 3063-00]
gi|419429042|ref|ZP_13969210.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11856]
gi|419436891|ref|ZP_13976972.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 8190-05]
gi|419439055|ref|ZP_13979120.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13499]
gi|419492000|ref|ZP_14031731.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47179]
gi|419502739|ref|ZP_14042417.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47628]
gi|419529044|ref|ZP_14068581.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17719]
gi|419533270|ref|ZP_14072782.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47794]
gi|421275926|ref|ZP_15726752.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA52612]
gi|254766644|sp|C1CTY2.1|MUTS_STRZT RecName: Full=DNA mismatch repair protein MutS
gi|225727079|gb|ACO22930.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
Taiwan19F-14]
gi|251766523|gb|ACT16085.1| DNA mismatch repair protein [Streptococcus pneumoniae]
gi|298237171|gb|ADI68302.1| DNA mismatch repair protein [Streptococcus pneumoniae TCH8431/19A]
gi|327388813|gb|EGE87161.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04375]
gi|353753421|gb|EHD34044.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44288]
gi|353754901|gb|EHD35511.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47281]
gi|353762413|gb|EHD42972.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA49138]
gi|353768654|gb|EHD49177.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 7286-06]
gi|353803731|gb|EHD84022.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13455]
gi|353811907|gb|EHD92143.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA14798]
gi|353815178|gb|EHD95398.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA16121]
gi|353876820|gb|EHE56665.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 5185-06]
gi|353878884|gb|EHE58712.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 3063-00]
gi|379535812|gb|EHZ01008.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13499]
gi|379551888|gb|EHZ16980.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11856]
gi|379562688|gb|EHZ27697.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17719]
gi|379591081|gb|EHZ55910.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47179]
gi|379597954|gb|EHZ62749.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47628]
gi|379604173|gb|EHZ68934.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47794]
gi|379611178|gb|EHZ75905.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 8190-05]
gi|395871680|gb|EJG82782.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA52612]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|73666889|ref|YP_302905.1| DNA mismatch repair protein MutS [Ehrlichia canis str. Jake]
gi|108884793|sp|Q3YSJ8.1|MUTS_EHRCJ RecName: Full=DNA mismatch repair protein MutS
gi|72394030|gb|AAZ68307.1| DNA mismatch repair protein MutS [Ehrlichia canis str. Jake]
Length = 804
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Query: 657 EGSAVHNTVD---MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G V N +D MQ + L+TGPN GKS+ LR +L G VPA SA I D
Sbjct: 593 NGKFVANDIDLAQMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAYSAHIGVIDK 652
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D+ A G S+F VEM+E +I+ T +S V++DEI RGT T G IA S+I
Sbjct: 653 IFSRVGASDNIAFGYSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVI 712
Query: 774 ETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + N+ I +TH H + L ++N M E +G+ V +++ G +S
Sbjct: 713 EQIHNVNKSRAIFATHYHELSKLDECLENIKCFCMKVEEWNGKVVFLHEIIPGSTNKSYG 772
Query: 833 FETAKREGVPETIIQRAEDL 852
AK G P++++ RAEDL
Sbjct: 773 IHVAKLAGFPQSVLDRAEDL 792
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + K+++ +L R+GDFYE DA +E + + + ++P G P +
Sbjct: 13 QYMMLKNQYKECLLFYRLGDFYELFFDDA---IETSKVLNIVLTKKGNVPMCGVPFHSSE 69
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L+ L + GY V I E+++ P +A+ R
Sbjct: 70 SYLNRLVKLGYKVAICEQLETPEEAKKR 97
>gi|225677058|ref|ZP_03788064.1| DNA mismatch repair protein [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225590904|gb|EEH12125.1| DNA mismatch repair protein [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 217
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 1/192 (0%)
Query: 663 NTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + + D
Sbjct: 21 NSINLAGIHLITGPNMAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGATD 80
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-C 781
+ G S+F VEM E +IV T RSLV++DEI R T G IA ++IE + N+ C
Sbjct: 81 NITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRDTGVYDGLSIAQAVIEHIHNVNKC 140
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
I +TH H + + +KN + +G+ + ++++GI ES AK G
Sbjct: 141 RAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLAGF 200
Query: 842 PETIIQRAEDLY 853
P++++ RA +++
Sbjct: 201 PDSVLNRASEVF 212
>gi|148992081|ref|ZP_01821855.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP9-BS68]
gi|168489138|ref|ZP_02713337.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP195]
gi|417680045|ref|ZP_12329438.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17570]
gi|418126712|ref|ZP_12763614.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44511]
gi|418192506|ref|ZP_12829005.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47388]
gi|418215266|ref|ZP_12841997.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA54644]
gi|418235261|ref|ZP_12861834.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA08780]
gi|419485280|ref|ZP_14025051.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA43257]
gi|421221261|ref|ZP_15678092.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070425]
gi|421223398|ref|ZP_15680176.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070531]
gi|421279837|ref|ZP_15730640.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17301]
gi|147929130|gb|EDK80141.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP9-BS68]
gi|183572226|gb|EDT92754.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP195]
gi|251766519|gb|ACC61789.1| DNA mismatch repair protein [Streptococcus pneumoniae]
gi|251766521|gb|ACC61790.1| DNA mismatch repair protein [Streptococcus pneumoniae]
gi|332071510|gb|EGI82003.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17570]
gi|353794248|gb|EHD74605.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44511]
gi|353854340|gb|EHE34318.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47388]
gi|353867556|gb|EHE47447.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA54644]
gi|353884984|gb|EHE64774.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA08780]
gi|379580053|gb|EHZ44948.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA43257]
gi|395584249|gb|EJG44642.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070425]
gi|395586256|gb|EJG46631.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070531]
gi|395877065|gb|EJG88135.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17301]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMENPKQAVGVVKREVVQVITPGT 114
>gi|387789117|ref|YP_006254185.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae ST556]
gi|418117966|ref|ZP_12754929.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA18523]
gi|418165391|ref|ZP_12802053.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17371]
gi|418172231|ref|ZP_12808848.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19451]
gi|418196741|ref|ZP_12833212.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47688]
gi|418198930|ref|ZP_12835382.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47778]
gi|419426031|ref|ZP_13966222.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 7533-05]
gi|419428139|ref|ZP_13968316.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 5652-06]
gi|419445598|ref|ZP_13985609.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19923]
gi|419447754|ref|ZP_13987755.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 7879-04]
gi|419449862|ref|ZP_13989855.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 4075-00]
gi|419452004|ref|ZP_13991984.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP02]
gi|419519796|ref|ZP_14059399.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA08825]
gi|421288484|ref|ZP_15739242.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA58771]
gi|353793414|gb|EHD73778.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA18523]
gi|353827171|gb|EHE07324.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17371]
gi|353833434|gb|EHE13544.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19451]
gi|353858773|gb|EHE38732.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47688]
gi|353859345|gb|EHE39296.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47778]
gi|379138859|gb|AFC95650.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae ST556]
gi|379569418|gb|EHZ34388.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19923]
gi|379611494|gb|EHZ76217.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 7879-04]
gi|379616015|gb|EHZ80715.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 5652-06]
gi|379616437|gb|EHZ81132.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 7533-05]
gi|379620806|gb|EHZ85456.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 4075-00]
gi|379621223|gb|EHZ85871.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP02]
gi|379637950|gb|EIA02496.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA08825]
gi|395885116|gb|EJG96143.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA58771]
Length = 835
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|418108694|ref|ZP_12745727.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41410]
gi|421232765|ref|ZP_15689402.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2080076]
gi|421239407|ref|ZP_15695968.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2071247]
gi|353775151|gb|EHD55632.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41410]
gi|395593294|gb|EJG53543.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2080076]
gi|395599541|gb|EJG59706.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2071247]
Length = 717
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 460 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 519
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 520 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 579
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 580 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 639
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 640 AGLPADLLARADKI-----LTQLENQGTESPPP 667
>gi|421295155|ref|ZP_15745873.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA56113]
gi|421300333|ref|ZP_15751004.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19998]
gi|395891512|gb|EJH02507.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA56113]
gi|395899757|gb|EJH10696.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19998]
Length = 835
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMENPKQAVGVVKREVVQVITPGT 105
>gi|419509158|ref|ZP_14048806.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA49542]
gi|379609449|gb|EHZ74187.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA49542]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMENPKQAVGVVKREVVQVITPGT 114
>gi|302874906|ref|YP_003843539.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B]
gi|307690474|ref|ZP_07632920.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B]
gi|302577763|gb|ADL51775.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B]
Length = 901
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 7/202 (3%)
Query: 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G+ + N++ + L ++TGPN GGKS+ +R +++ G VPAESA+I D
Sbjct: 593 GNFISNSISLDREENQLLIITGPNMGGKSTYMRQCALITIMAQIGSFVPAESATIGICDK 652
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D A GKS+F VEM E+ +I+ T+ SLVL+DE+ RGT T G IA ++I
Sbjct: 653 VFTRIGASDDLAGGKSTFMVEMWEVANILNNATNNSLVLLDEVGRGTSTYDGLSIAWAVI 712
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E L N+ C + +TH H + L + ++G + + + + K+V G ES
Sbjct: 713 EFLTTNKNVKCKTLFATHYHELTKLEAEFSGVKNYSVGVKKIGEEIIFLHKIVKGAADES 772
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E A+ G+P+ ++ R++++
Sbjct: 773 YGIEVARLAGLPQAVLDRSKEI 794
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ LQ K + P+ +L R+GDFYE DA I L G GL E P G P
Sbjct: 9 QYLQIKEENPQCILFFRLGDFYEMFFEDAKIASRELELVLTGRDCGLE-ERAPMCGIPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
+ L GY V I E+++ P+ A+ R I PG+ Y+ G
Sbjct: 68 AANVYISKLVSRGYKVGICEQLEDPSVAKGIVKRGIVKVYTPGT-YIEG 115
>gi|421225924|ref|ZP_15682658.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070768]
gi|395588012|gb|EJG48347.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070768]
Length = 717
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 460 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 519
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 520 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 579
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 580 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 639
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 640 AGLPADLLARADKI-----LTQLENQGTESPPP 667
>gi|421308282|ref|ZP_15758920.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA60132]
gi|395905085|gb|EJH15991.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA60132]
Length = 835
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|419483089|ref|ZP_14022872.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA40563]
gi|379577621|gb|EHZ42539.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA40563]
Length = 835
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|88608613|ref|YP_506224.1| DNA mismatch repair protein MutS [Neorickettsia sennetsu str.
Miyayama]
gi|88600782|gb|ABD46250.1| DNA mismatch repair protein MutS [Neorickettsia sennetsu str.
Miyayama]
Length = 815
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 155/301 (51%), Gaps = 20/301 (6%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGL-----SSELQTKINILVFASMLLVIGKAL 615
++TL+++ + +A + LEL R L +SE K I A + ++ A
Sbjct: 505 YTTLELQNLEAQIAKANENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVI---AS 561
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS---LFL 672
FA ++ +RK+V P ++D +N L+++G + F + V N + S + +
Sbjct: 562 FAEIAV--QRKYVRP-----QVDNSNELRISG-GRHPFVEQVNAFVPNDLAFTSAERVCV 613
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
LTGPN GKS+ LR ++L G VPA+SA I D + + + D+ A GKS+F
Sbjct: 614 LTGPNMAGKSTYLRQNALITILAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFM 673
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E +IV T RSLV++DE+ RGT T G IA +++E L D++ C I +TH +
Sbjct: 674 VEMMETANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYLHDSVNCKTIFATHYNE 733
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L K+ ++ + + + +K+V G S TA G+PE II+RA +
Sbjct: 734 LCDLESKLPRMKCYSIEVKRWRDEVLLMYKIVPGRGDNSYGIHTAMLSGIPEAIIRRATE 793
Query: 852 L 852
+
Sbjct: 794 I 794
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 49 LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN--PFGGLRPESIPKAGCPVVNLR 106
L+ + ++P V+ RVGDFYE DA + GL+ G + + IP G PV +
Sbjct: 13 LEVRCQYPDAVVFYRVGDFYEMFFEDAREVSHLLGLHLTRRGTYKGKDIPMCGVPVSSCE 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSR 134
++ L + G V I E+++ +A+ R
Sbjct: 73 VYINKLVKLGRKVAICEQLETAEEAKKR 100
>gi|421228303|ref|ZP_15684999.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2072047]
gi|395592711|gb|EJG52969.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2072047]
Length = 717
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 460 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 519
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 520 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 579
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 580 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 639
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 640 AGLPADLLARADKI-----LTQLENQGTESPPP 667
>gi|418147325|ref|ZP_12784097.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13637]
gi|353810405|gb|EHD90656.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13637]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|421218814|ref|ZP_15675701.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070335]
gi|395581411|gb|EJG41882.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070335]
Length = 717
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 460 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 519
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 520 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 579
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 580 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 639
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 640 AGLPADLLARADKI-----LTQLENQGTESPPP 667
>gi|419531177|ref|ZP_14070700.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA40028]
gi|379570005|gb|EHZ34970.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA40028]
Length = 835
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|149023772|ref|ZP_01836233.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP23-BS72]
gi|421209777|ref|ZP_15666786.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070005]
gi|147929568|gb|EDK80561.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP23-BS72]
gi|395571947|gb|EJG32548.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070005]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|169832918|ref|YP_001695440.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
Hungary19A-6]
gi|419494197|ref|ZP_14033919.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47210]
gi|238688314|sp|B1I9E5.1|MUTS_STRPI RecName: Full=DNA mismatch repair protein MutS
gi|168995420|gb|ACA36032.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
Hungary19A-6]
gi|379591459|gb|EHZ56283.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47210]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|168486892|ref|ZP_02711400.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
CDC1087-00]
gi|418185832|ref|ZP_12822368.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47283]
gi|419511257|ref|ZP_14050895.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP141]
gi|421214049|ref|ZP_15671000.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070108]
gi|421216134|ref|ZP_15673053.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070109]
gi|183570158|gb|EDT90686.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
CDC1087-00]
gi|353847270|gb|EHE27296.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47283]
gi|379630337|gb|EHZ94923.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP141]
gi|395578235|gb|EJG38759.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070108]
gi|395579139|gb|EJG39644.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070109]
Length = 844
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|418183617|ref|ZP_12820171.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA43380]
gi|353846635|gb|EHE26663.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA43380]
Length = 835
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|418133526|ref|ZP_12770393.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11304]
gi|353804020|gb|EHD84307.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11304]
Length = 835
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|418079522|ref|ZP_12716741.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 4027-06]
gi|418111054|ref|ZP_12748070.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA49447]
gi|418144257|ref|ZP_12781056.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13494]
gi|418149421|ref|ZP_12786180.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13856]
gi|418203313|ref|ZP_12839737.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA52306]
gi|418239596|ref|ZP_12866143.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419432472|ref|ZP_13972597.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP05]
gi|419441269|ref|ZP_13981309.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA40410]
gi|419454301|ref|ZP_13994268.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP03]
gi|419463211|ref|ZP_14003111.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA02714]
gi|419469879|ref|ZP_14009743.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA06083]
gi|419515575|ref|ZP_14055197.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
England14-9]
gi|419526809|ref|ZP_14066361.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA14373]
gi|421267055|ref|ZP_15717932.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPAR27]
gi|421282065|ref|ZP_15732858.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04672]
gi|421286384|ref|ZP_15737156.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA60190]
gi|421292890|ref|ZP_15743621.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA56348]
gi|421299543|ref|ZP_15750226.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA60080]
gi|421310482|ref|ZP_15761104.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA62681]
gi|353745265|gb|EHD25935.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 4027-06]
gi|353780720|gb|EHD61176.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA49447]
gi|353808892|gb|EHD89155.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13494]
gi|353810223|gb|EHD90475.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13856]
gi|353865506|gb|EHE45414.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA52306]
gi|353891146|gb|EHE70903.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379529248|gb|EHY94497.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA02714]
gi|379542589|gb|EHZ07744.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA06083]
gi|379555806|gb|EHZ20870.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA14373]
gi|379575926|gb|EHZ40855.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA40410]
gi|379622439|gb|EHZ87074.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP03]
gi|379626505|gb|EHZ91122.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP05]
gi|379633891|gb|EHZ98457.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
England14-9]
gi|395865440|gb|EJG76579.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPAR27]
gi|395878512|gb|EJG89575.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04672]
gi|395884840|gb|EJG95874.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA60190]
gi|395891138|gb|EJH02140.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA56348]
gi|395898063|gb|EJH09010.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA60080]
gi|395908097|gb|EJH18980.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA62681]
Length = 835
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|168491603|ref|ZP_02715746.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
CDC0288-04]
gi|307128338|ref|YP_003880369.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 670-6B]
gi|418194625|ref|ZP_12831111.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47439]
gi|183574029|gb|EDT94557.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
CDC0288-04]
gi|251766525|gb|ACC61791.1| DNA mismatch repair protein [Streptococcus pneumoniae]
gi|306485400|gb|ADM92269.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 670-6B]
gi|353854764|gb|EHE34735.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47439]
Length = 844
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|303391044|ref|XP_003073752.1| MutS-like DNA mismatch repair protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302900|gb|ADM12392.1| MutS-like DNA mismatch repair protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 925
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 104/191 (54%), Gaps = 4/191 (2%)
Query: 661 VHNTVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N + Q + +LTG N GGKS+LLR++C +L G+ V E P FD I +
Sbjct: 717 VANDYNAQKRILVLTGANMGGKSTLLRTLCFNVILSQAGMDVCCEKMETPLFDRIFTRIG 776
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D G+S+F VE+ E SI+ +T SLV++DE+ RGT T G CIA ++++ L
Sbjct: 777 ARDDLVKGESTFMVELGETASILKHSTRNSLVMMDELGRGTSTRDGECIARAVLDYLKER 836
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
GC + STH H I +++ + M + V +KL+DG +S A+
Sbjct: 837 GCHVLFSTHYHRIIR---EVEGVSNGYMNSTVKGKDIVFLYKLMDGTSWDSHGLYVARMA 893
Query: 840 GVPETIIQRAE 850
GVPE I++RAE
Sbjct: 894 GVPEEIVERAE 904
>gi|87310334|ref|ZP_01092464.1| DNA mismatch repair protein [Blastopirellula marina DSM 3645]
gi|87286833|gb|EAQ78737.1| DNA mismatch repair protein [Blastopirellula marina DSM 3645]
Length = 873
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 150/327 (45%), Gaps = 17/327 (5%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E + T +++E E+ A KAK EL L +Q + + +L L +
Sbjct: 501 ERYITPELKEYEEKVLSADEKAKDLEYELFGQLRDAVQLDAKRIQQTADVLANLDCLLSL 560
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYW-FDAAEGSAVHNTVDMQS----LFLL 673
R R + P + + A ++G P EG V N + S + L+
Sbjct: 561 AELARERNYCRPQVGE----SAVLRILDGRHPVLDLKEIEGGFVPNDAQLDSESGFIGLI 616
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R + SL+ G VPA A + D I + + D + G+S+F V
Sbjct: 617 TGPNMAGKSTYIRQVALISLMAQMGSFVPAREADLGIVDRIFARVGASDELSRGQSTFMV 676
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EM+E I+ T+RSLV++DEI RGT T G +A SI+E L D IGC + +TH H +
Sbjct: 677 EMTETARILNTATNRSLVILDEIGRGTSTYDGVSLAWSIVEYLHDKIGCRTLFATHYHEL 736
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
L + + + D + + K+V G +S A+ GVP + +RA+ +
Sbjct: 737 TDLRSSLPGVVNLNVAVKEWDDKVIFLHKIVPGAADKSYGIYVARLAGVPREVNERAKQI 796
Query: 853 -------YIACGVNCVMIAAREQPPPS 872
++ G N + + +E+ P +
Sbjct: 797 LNQLESEHLDSGGNAKIASKKERRPKT 823
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPVVNLRQTLDDLTRNGY 117
+L R+GDFYE DA G+ + E + P AG P L L L GY
Sbjct: 21 ILFFRMGDFYELFNDDAKTAARVLGMTLTSRDKGENATPMAGFPHHQLDNYLGKLIHLGY 80
Query: 118 SVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
V I ++V+ P +A+ R I+ PG+
Sbjct: 81 RVAICDQVENPKEAKGIVRREITRIVTPGT 110
>gi|418103804|ref|ZP_12740872.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP070]
gi|419476465|ref|ZP_14016296.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA14688]
gi|419487613|ref|ZP_14027372.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44128]
gi|353773367|gb|EHD53864.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP070]
gi|379557181|gb|EHZ22227.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA14688]
gi|379584505|gb|EHZ49371.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44128]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|15903929|ref|NP_359479.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae R6]
gi|182685013|ref|YP_001836760.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CGSP14]
gi|15459581|gb|AAL00690.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae R6]
gi|182630347|gb|ACB91295.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae CGSP14]
Length = 857
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 600 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 659
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 660 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 719
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 720 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 779
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 780 AGLPADLLARADKI-----LTQLENQGTESPPP 807
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 25 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 83
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 84 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 127
>gi|421237166|ref|ZP_15693758.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2071004]
gi|395600104|gb|EJG60262.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2071004]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|421207579|ref|ZP_15664624.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2090008]
gi|421243843|ref|ZP_15700353.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2081074]
gi|395572251|gb|EJG32849.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2090008]
gi|395605769|gb|EJG65883.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2081074]
Length = 702
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 445 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 504
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 505 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 564
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 565 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 624
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 625 AGLPADLLARADKI-----LTQLENQGTESPPP 652
>gi|419443478|ref|ZP_13983498.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13224]
gi|379549029|gb|EHZ14140.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13224]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|111657151|ref|ZP_01407932.1| hypothetical protein SpneT_02001631 [Streptococcus pneumoniae
TIGR4]
gi|116515831|ref|YP_817292.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae D39]
gi|148989894|ref|ZP_01821177.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP6-BS73]
gi|148998130|ref|ZP_01825643.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP11-BS70]
gi|149002904|ref|ZP_01827815.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP14-BS69]
gi|149006958|ref|ZP_01830639.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP18-BS74]
gi|149011933|ref|ZP_01833081.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP19-BS75]
gi|168484415|ref|ZP_02709367.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
CDC1873-00]
gi|168494170|ref|ZP_02718313.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
CDC3059-06]
gi|168577109|ref|ZP_02722929.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae MLV-016]
gi|221232788|ref|YP_002511942.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae ATCC
700669]
gi|225855565|ref|YP_002737077.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae JJA]
gi|225857650|ref|YP_002739161.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae P1031]
gi|225859833|ref|YP_002741343.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 70585]
gi|237650273|ref|ZP_04524525.1| DNA mismatch repair protein [Streptococcus pneumoniae CCRI 1974]
gi|237822221|ref|ZP_04598066.1| DNA mismatch repair protein [Streptococcus pneumoniae CCRI 1974M2]
gi|303259578|ref|ZP_07345554.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae
SP-BS293]
gi|303262023|ref|ZP_07347968.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae
SP14-BS292]
gi|303264479|ref|ZP_07350398.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS397]
gi|303267398|ref|ZP_07353254.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS457]
gi|303269757|ref|ZP_07355508.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS458]
gi|307068689|ref|YP_003877655.1| mismatch repair ATPase [Streptococcus pneumoniae AP200]
gi|387760161|ref|YP_006067139.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae INV200]
gi|410477415|ref|YP_006744174.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae
gamPNI0373]
gi|415700922|ref|ZP_11458265.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 459-5]
gi|415748022|ref|ZP_11476288.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SV35]
gi|415753275|ref|ZP_11480257.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SV36]
gi|417677785|ref|ZP_12327188.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17545]
gi|417697254|ref|ZP_12346429.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47368]
gi|417699460|ref|ZP_12348628.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41317]
gi|418074923|ref|ZP_12712169.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11184]
gi|418081723|ref|ZP_12718929.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 6735-05]
gi|418086355|ref|ZP_12723528.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47033]
gi|418090445|ref|ZP_12727595.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA43265]
gi|418092683|ref|ZP_12729820.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44452]
gi|418097204|ref|ZP_12734309.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA16531]
gi|418099409|ref|ZP_12736502.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 6901-05]
gi|418106198|ref|ZP_12743249.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44500]
gi|418113605|ref|ZP_12750599.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 5787-06]
gi|418117755|ref|ZP_12754721.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 6963-05]
gi|418122136|ref|ZP_12759076.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44194]
gi|418124438|ref|ZP_12761365.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44378]
gi|418128974|ref|ZP_12765863.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP170]
gi|418131234|ref|ZP_12768114.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA07643]
gi|418135849|ref|ZP_12772699.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11426]
gi|418138176|ref|ZP_12775010.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11663]
gi|418140413|ref|ZP_12777234.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13338]
gi|418156038|ref|ZP_12792760.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA16242]
gi|418163114|ref|ZP_12799792.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17328]
gi|418167728|ref|ZP_12804378.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17971]
gi|418170190|ref|ZP_12806827.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19077]
gi|418174500|ref|ZP_12811107.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41277]
gi|418176873|ref|ZP_12813461.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41437]
gi|418179203|ref|ZP_12815781.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41565]
gi|418181439|ref|ZP_12818004.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41688]
gi|418188065|ref|ZP_12824583.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47360]
gi|418217528|ref|ZP_12844204.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
Netherlands15B-37]
gi|418219797|ref|ZP_12846459.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP127]
gi|418222117|ref|ZP_12848766.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47751]
gi|418226433|ref|ZP_12853057.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP112]
gi|418230899|ref|ZP_12857494.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP01]
gi|419424059|ref|ZP_13964267.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA43264]
gi|419434697|ref|ZP_13974811.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA40183]
gi|419456329|ref|ZP_13996283.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP04]
gi|419458615|ref|ZP_13998554.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA02254]
gi|419465508|ref|ZP_14005396.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04175]
gi|419471957|ref|ZP_14011813.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA07914]
gi|419474154|ref|ZP_14013999.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13430]
gi|419478724|ref|ZP_14018543.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA18068]
gi|419498450|ref|ZP_14038152.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47522]
gi|419504799|ref|ZP_14044462.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47760]
gi|419506950|ref|ZP_14046608.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA49194]
gi|419535567|ref|ZP_14075061.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17457]
gi|421211923|ref|ZP_15668901.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070035]
gi|421230631|ref|ZP_15687290.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2061376]
gi|421245907|ref|ZP_15702403.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2081685]
gi|421248248|ref|ZP_15704722.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2082170]
gi|421271501|ref|ZP_15722351.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPAR48]
gi|421273748|ref|ZP_15724585.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPAR55]
gi|421297090|ref|ZP_15747793.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA58581]
gi|421312839|ref|ZP_15763436.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA58981]
gi|421314933|ref|ZP_15765517.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47562]
gi|444388920|ref|ZP_21186878.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
PCS125219]
gi|444391227|ref|ZP_21189140.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
PCS70012]
gi|444393833|ref|ZP_21191451.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
PCS81218]
gi|444395966|ref|ZP_21193503.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0002]
gi|444398360|ref|ZP_21195842.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0006]
gi|444400827|ref|ZP_21198181.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0007]
gi|444403487|ref|ZP_21200576.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0008]
gi|444406114|ref|ZP_21202912.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0009]
gi|444407976|ref|ZP_21204643.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0010]
gi|444411224|ref|ZP_21207678.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0076]
gi|444412375|ref|ZP_21208696.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0153]
gi|444416314|ref|ZP_21212468.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0199]
gi|444418866|ref|ZP_21214811.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0360]
gi|444421275|ref|ZP_21217019.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0427]
gi|444423963|ref|ZP_21219513.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0446]
gi|61225741|sp|P0A3R3.1|HEXA_STRPN RecName: Full=DNA mismatch repair protein HexA
gi|61225742|sp|P0A3R4.1|HEXA_STRR6 RecName: Full=DNA mismatch repair protein HexA
gi|122277862|sp|Q04I96.1|MUTS_STRP2 RecName: Full=DNA mismatch repair protein MutS
gi|254766639|sp|C1CAQ5.1|MUTS_STRP7 RecName: Full=DNA mismatch repair protein MutS
gi|254766640|sp|B8ZPK0.1|MUTS_STRPJ RecName: Full=DNA mismatch repair protein MutS
gi|254766642|sp|C1CH06.1|MUTS_STRZJ RecName: Full=DNA mismatch repair protein MutS
gi|254766643|sp|C1CN23.1|MUTS_STRZP RecName: Full=DNA mismatch repair protein MutS
gi|153655|gb|AAA88597.1| mismatch repair protein [Streptococcus pneumoniae]
gi|116076407|gb|ABJ54127.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae D39]
gi|133950199|gb|ABO44015.1| MutS [Streptococcus pneumoniae]
gi|147756140|gb|EDK63183.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP11-BS70]
gi|147758907|gb|EDK65902.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP14-BS69]
gi|147761559|gb|EDK68524.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP18-BS74]
gi|147763888|gb|EDK70821.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP19-BS75]
gi|147924679|gb|EDK75764.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
SP6-BS73]
gi|172042346|gb|EDT50392.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
CDC1873-00]
gi|183575846|gb|EDT96374.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
CDC3059-06]
gi|183577255|gb|EDT97783.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae MLV-016]
gi|220675250|emb|CAR69841.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae ATCC
700669]
gi|225720589|gb|ACO16443.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 70585]
gi|225722884|gb|ACO18737.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae JJA]
gi|225724726|gb|ACO20578.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae P1031]
gi|251766517|gb|ACC61788.1| DNA mismatch repair protein [Streptococcus pneumoniae]
gi|301802750|emb|CBW35522.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae INV200]
gi|302636663|gb|EFL67153.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae
SP14-BS292]
gi|302639130|gb|EFL69589.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae
SP-BS293]
gi|302640704|gb|EFL71100.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS458]
gi|302643063|gb|EFL73354.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS457]
gi|302645849|gb|EFL76077.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS397]
gi|306410226|gb|ADM85653.1| Mismatch repair ATPase (MutS family) [Streptococcus pneumoniae
AP200]
gi|332071146|gb|EGI81641.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17545]
gi|332198497|gb|EGJ12580.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41317]
gi|332198681|gb|EGJ12763.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47368]
gi|353745097|gb|EHD25768.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11184]
gi|353750045|gb|EHD30687.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 6735-05]
gi|353759445|gb|EHD40029.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA43265]
gi|353760414|gb|EHD40991.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47033]
gi|353761829|gb|EHD42393.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44452]
gi|353765827|gb|EHD46368.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA16531]
gi|353767629|gb|EHD48161.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 6901-05]
gi|353774488|gb|EHD54977.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44500]
gi|353786956|gb|EHD67365.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 6963-05]
gi|353789508|gb|EHD69902.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 5787-06]
gi|353790465|gb|EHD70847.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44194]
gi|353794050|gb|EHD74408.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44378]
gi|353797024|gb|EHD77361.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP170]
gi|353800649|gb|EHD80958.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA07643]
gi|353819509|gb|EHD99705.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA16242]
gi|353825249|gb|EHE05414.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17328]
gi|353827472|gb|EHE07623.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17971]
gi|353832644|gb|EHE12760.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA19077]
gi|353835024|gb|EHE15119.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41277]
gi|353840187|gb|EHE20259.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41437]
gi|353840957|gb|EHE21017.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41565]
gi|353841155|gb|EHE21212.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41688]
gi|353847874|gb|EHE27893.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47360]
gi|353868766|gb|EHE48650.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
Netherlands15B-37]
gi|353872096|gb|EHE51963.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP127]
gi|353872512|gb|EHE52376.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47751]
gi|353879073|gb|EHE58900.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae NP112]
gi|353884410|gb|EHE64209.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP01]
gi|353899533|gb|EHE75102.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11663]
gi|353899957|gb|EHE75520.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA11426]
gi|353904259|gb|EHE79736.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13338]
gi|379528611|gb|EHY93865.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA02254]
gi|379535634|gb|EHZ00832.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04175]
gi|379543346|gb|EHZ08496.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA07914]
gi|379549223|gb|EHZ14333.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13430]
gi|379561707|gb|EHZ26722.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17457]
gi|379562996|gb|EHZ28001.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA18068]
gi|379574939|gb|EHZ39876.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA40183]
gi|379584481|gb|EHZ49349.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA43264]
gi|379597514|gb|EHZ62312.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47522]
gi|379603985|gb|EHZ68747.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47760]
gi|379604397|gb|EHZ69156.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA49194]
gi|379626292|gb|EHZ90910.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae EU-NP04]
gi|381308922|gb|EIC49765.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SV36]
gi|381313437|gb|EIC54221.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 459-5]
gi|381319501|gb|EIC60201.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SV35]
gi|395571614|gb|EJG32225.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2070035]
gi|395592640|gb|EJG52899.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2061376]
gi|395606444|gb|EJG66549.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2081685]
gi|395612109|gb|EJG72154.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2082170]
gi|395865640|gb|EJG76778.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPAR48]
gi|395872085|gb|EJG83185.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPAR55]
gi|395892664|gb|EJH03654.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA58581]
gi|395907591|gb|EJH18481.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA58981]
gi|395911517|gb|EJH22382.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47562]
gi|406370360|gb|AFS44050.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae
gamPNI0373]
gi|444247603|gb|ELU54143.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
PCS125219]
gi|444255385|gb|ELU61741.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
PCS70012]
gi|444255528|gb|ELU61879.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae
PCS81218]
gi|444255638|gb|ELU61984.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0002]
gi|444259089|gb|ELU65405.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0006]
gi|444264257|gb|ELU70357.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0008]
gi|444265134|gb|ELU71161.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0007]
gi|444270182|gb|ELU75968.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0009]
gi|444271572|gb|ELU77323.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0010]
gi|444274337|gb|ELU79984.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0153]
gi|444274958|gb|ELU80593.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0076]
gi|444277575|gb|ELU83078.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0199]
gi|444279773|gb|ELU85159.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0360]
gi|444282868|gb|ELU88099.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0427]
gi|444285811|gb|ELU90833.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae PNI0446]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|419460909|ref|ZP_14000832.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA02270]
gi|419489817|ref|ZP_14029563.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44386]
gi|379529203|gb|EHY94453.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA02270]
gi|379585129|gb|EHZ49988.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA44386]
Length = 831
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 574 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 633
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 634 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 693
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 694 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 753
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 754 AGLPADLLARADKI-----LTQLENQGTESPPP 781
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 49 LQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 105
+ K ++P LL R+GDFYE ++A ++E + L IP AG P +
Sbjct: 1 MDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYHSA 59
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P QA R + PG+
Sbjct: 60 QQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 101
>gi|251766515|gb|ACC61787.1| DNA mismatch repair protein [Streptococcus pneumoniae]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|187935238|ref|YP_001886016.1| DNA mismatch repair protein MutS [Clostridium botulinum B str.
Eklund 17B]
gi|238691604|sp|B2TIC3.1|MUTS_CLOBB RecName: Full=DNA mismatch repair protein MutS
gi|187723391|gb|ACD24612.1| DNA mismatch repair protein MutS [Clostridium botulinum B str.
Eklund 17B]
Length = 942
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 4/202 (1%)
Query: 654 DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
D + N D + L L+TGPN GKS+ +R + +L+ G VPA SA+I D
Sbjct: 593 DFVSNNTALNQTD-KELLLITGPNMAGKSTYMRQVALITLMAQMGSFVPATSANISICDK 651
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ TS SLVL+DE+ RGT T G IA S+I
Sbjct: 652 IFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGTSTYDGLSIAWSVI 711
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + ++ C + +TH H + L + ++ + L V K+V+G ES
Sbjct: 712 EYITKNKDLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVVFLRKIVEGGADES 771
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +I RA ++
Sbjct: 772 YGIEVAKLAGLPENVINRAREI 793
>gi|170758982|ref|YP_001787121.1| DNA mismatch repair protein MutS [Clostridium botulinum A3 str.
Loch Maree]
gi|189030710|sp|B1KSA3.1|MUTS_CLOBM RecName: Full=DNA mismatch repair protein MutS
gi|169405971|gb|ACA54382.1| DNA mismatch repair protein MutS [Clostridium botulinum A3 str.
Loch Maree]
Length = 932
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKEANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L IK ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIKGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|46199262|ref|YP_004929.1| DNA mismatch repair protein MutS [Thermus thermophilus HB27]
gi|48428292|sp|P61671.1|MUTS_THET2 RecName: Full=DNA mismatch repair protein MutS
gi|46196887|gb|AAS81302.1| DNA mismatch repair protein mutS [Thermus thermophilus HB27]
Length = 811
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I +
Sbjct: 568 VPNDLEMAHELVLVTGPNMAGKSTFLRQTALIALLAQIGSFVPAEEAELPLFDGIYTRIG 627
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A GKS+F VEM E+ ++ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 628 ASDDLAGGKSTFMVEMEEVALVLKEATERSLVLLDEVGRGTSSLDGVAIATALAEALHER 687
Query: 780 GCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
C + +TH + +L L ++KN A E G V +++ G +S E A+
Sbjct: 688 RCYTLFATHYFELTALALPRLKNLHVAAKEEE---GGLVFYHQVLPGPASKSYGVEVAEM 744
Query: 839 EGVPETIIQRAEDLYIACGVN 859
G+P+ +++RA L A
Sbjct: 745 AGLPKEVVERARALLSAMAAR 765
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 16 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPI 75
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + + ++V+ +A R ++ PG+
Sbjct: 76 RAFDAYAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 120
>gi|421234923|ref|ZP_15691538.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2061617]
gi|421250338|ref|ZP_15706790.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2082239]
gi|395599300|gb|EJG59473.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2061617]
gi|395612455|gb|EJG72496.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 2082239]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|417687534|ref|ZP_12336801.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41301]
gi|418201128|ref|ZP_12837567.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47976]
gi|419522030|ref|ZP_14061621.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA05245]
gi|421269247|ref|ZP_15720110.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPAR95]
gi|332071344|gb|EGI81838.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41301]
gi|353862561|gb|EHE42492.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47976]
gi|379536017|gb|EHZ01208.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA05245]
gi|395866369|gb|EJG77499.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SPAR95]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|194397405|ref|YP_002038666.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae G54]
gi|238690807|sp|B5E385.1|MUTS_STRP4 RecName: Full=DNA mismatch repair protein MutS
gi|194357072|gb|ACF55520.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae G54]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSXGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LXQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|418190311|ref|ZP_12826820.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47373]
gi|419524712|ref|ZP_14064281.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13723]
gi|421290640|ref|ZP_15741387.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA54354]
gi|421306033|ref|ZP_15756684.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA62331]
gi|353851570|gb|EHE31561.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47373]
gi|379554936|gb|EHZ20008.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA13723]
gi|395885544|gb|EJG96566.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA54354]
gi|395903717|gb|EJH14640.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA62331]
Length = 835
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 578 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 637
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 638 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 697
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 698 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 757
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 758 AGLPADLLARADKI-----LTQLENQGTESPPP 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 3 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 62 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 105
>gi|260665334|ref|ZP_05866182.1| DNA mismatch repair protein MutS [Lactobacillus jensenii SJ-7A-US]
gi|260560838|gb|EEX26814.1| DNA mismatch repair protein MutS [Lactobacillus jensenii SJ-7A-US]
Length = 854
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 4/201 (1%)
Query: 656 AEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
A+GS + N + M S+FL+TGPN GKS+ +R + +++ G VPA AS+P FD
Sbjct: 578 ADGSYIPNDIQMADDTSVFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEASLPIFD 637
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
I + + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I
Sbjct: 638 QIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAI 697
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
++ L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 698 VKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQENGKLIFLHKILPGPADQSY 757
Query: 832 AFETAKREGVPETIIQRAEDL 852
A+ G+P +++ A +
Sbjct: 758 GIHVAQLAGLPNKVLREASKM 778
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLRQT 108
KS++P L RVGDFYE DA ++E L IP AG P +
Sbjct: 9 KSQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTENPIPMAGVPHQAVDSY 67
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P QA+ R I PG+
Sbjct: 68 VNTLVEKGYKVALCEQLEDPKQAKGMVKRGIIQLVTPGT 106
>gi|269122808|ref|YP_003305385.1| DNA mismatch repair protein MutS [Streptobacillus moniliformis DSM
12112]
gi|268314134|gb|ACZ00508.1| DNA mismatch repair protein MutS [Streptobacillus moniliformis DSM
12112]
Length = 848
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 142/305 (46%), Gaps = 32/305 (10%)
Query: 566 VEEALERYHEAGAKAKAKVLEL----LRGLSSELQTKINILVFASMLLVIGKALFAHVSE 621
+ E ++ Y + +KAK+ EL + LSS ++ N+ + S L L +
Sbjct: 490 ITEEIKSYEDKIINSKAKITELEYIIFKNLSSYIKEFKNVFIELSNTLAYIDILISFAIT 549
Query: 622 GRRRKWVFP-------ALKDI------ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ 668
+V P +KD +L G N N + +FD D
Sbjct: 550 ALENNYVRPNFNEEYFEIKDARHPVVEKLIGDNTFISNNV---YFD-----------DKN 595
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+LTGPN GKS+ ++ I S++ G VPA SA++ D I+ + + D G+
Sbjct: 596 RFIILTGPNMSGKSTYMKQIALISIMAQIGSFVPASSANLNMVDKILTRIGASDDILSGQ 655
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE+ SI+ + T+ SL+++DE+ RGT T G IA SI + + +NI I +T
Sbjct: 656 STFMVEMSEVASIINSATTNSLIILDEVGRGTSTYDGLAIASSISKYIVENINAKSIFAT 715
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L + + + E +G+ +V G S E AK G+P+TII+
Sbjct: 716 HYHELTELENEYETIKNYRIEVEEKNGKVNFLRTIVKGGADRSYGIEVAKLAGLPKTIIR 775
Query: 848 RAEDL 852
+ L
Sbjct: 776 ESTKL 780
Score = 43.1 bits (100), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL-----NPFGGLRPESIPKAGCPVVN 104
+ K + +L R+GDFYE DA I GL N G+ +IP AG P +
Sbjct: 11 EIKKDYMEYILFFRLGDFYEMFFEDAEIASRVLGLTLTARNKEKGM---NIPLAGIPYHS 67
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQAR 132
+ + L GY V I E+ + P A+
Sbjct: 68 SKPYIAKLVNAGYKVAICEQTENPKDAK 95
>gi|238855606|ref|ZP_04645907.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 269-3]
gi|313473091|ref|ZP_07813575.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 1153]
gi|238831750|gb|EEQ24086.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 269-3]
gi|313448795|gb|EEQ67673.2| DNA mismatch repair protein MutS [Lactobacillus jensenii 1153]
Length = 860
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 4/201 (1%)
Query: 656 AEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
A+GS + N + M S+FL+TGPN GKS+ +R + +++ G VPA AS+P FD
Sbjct: 584 ADGSYIPNDIQMADDTSVFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEASLPIFD 643
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
I + + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I
Sbjct: 644 QIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAI 703
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
++ L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 704 VKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQENGKLIFLHKILPGPADQSY 763
Query: 832 AFETAKREGVPETIIQRAEDL 852
A+ G+P +++ A +
Sbjct: 764 GIHVAQLAGLPNKVLREASKM 784
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLRQT 108
KS++P L RVGDFYE DA ++E L IP AG P +
Sbjct: 15 KSQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTENPIPMAGVPHQAVDSY 73
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P QA+ R I PG+
Sbjct: 74 VNTLVEKGYKVALCEQLEDPKQAKGMVKRGIIQLVTPGT 112
>gi|2145507|pir||S62790 mismatch DNA recognition protein mutS [validated] - Thermus
aquaticus (fragment)
Length = 818
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I +
Sbjct: 575 VPNDLEMAHELVLVTGPNMAGKSTFLRQTALIALLAQIGSFVPAEEAELPLFDGIYTRIG 634
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A GKS+F VEM E+ ++ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 635 ASDDLAGGKSTFMVEMEEVALVLKEATERSLVLLDEVGRGTSSLDGVAIATALAEALHER 694
Query: 780 GCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
C + +TH + +L L ++KN A E G V +++ G +S E A+
Sbjct: 695 RCYTLFATHYFELTALALPRLKNLHVAAKEEE---GGLVFYHQVLPGPASKSYGVEVAEM 751
Query: 839 EGVPETIIQRAEDLYIACGVN 859
G+P+ +++RA L A
Sbjct: 752 AGLPKEVVERARALLSAMAAR 772
Score = 42.7 bits (99), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 23 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPI 82
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + + ++V+ +A R ++ PG+
Sbjct: 83 RAFDAYAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 127
>gi|55981293|ref|YP_144590.1| DNA mismatch repair protein MutS [Thermus thermophilus HB8]
gi|62297839|sp|Q56239.3|MUTS_THET8 RecName: Full=DNA mismatch repair protein MutS
gi|1871501|dbj|BAA09880.1| MutS [Thermus thermophilus HB8]
gi|55772706|dbj|BAD71147.1| DNA mismatch repair protein MutS [Thermus thermophilus HB8]
Length = 819
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I +
Sbjct: 576 VPNDLEMAHELVLVTGPNMAGKSTFLRQTALIALLAQIGSFVPAEEAELPLFDGIYTRIG 635
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A GKS+F VEM E+ ++ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 636 ASDDLAGGKSTFMVEMEEVALVLKEATERSLVLLDEVGRGTSSLDGVAIATALAEALHER 695
Query: 780 GCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
C + +TH + +L L ++KN A E G V +++ G +S E A+
Sbjct: 696 RCYTLFATHYFELTALALPRLKNLHVAAKEEE---GGLVFYHQVLPGPASKSYGVEVAEM 752
Query: 839 EGVPETIIQRAEDLYIACGVN 859
G+P+ +++RA L A
Sbjct: 753 AGLPKEVVERARALLSAMAAR 773
Score = 42.7 bits (99), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 24 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPI 83
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + + ++V+ +A R ++ PG+
Sbjct: 84 RAFDAYAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 128
>gi|21227785|ref|NP_633707.1| DNA mismatch repair protein MutS [Methanosarcina mazei Go1]
gi|452210265|ref|YP_007490379.1| DNA mismatch repair protein MutS [Methanosarcina mazei Tuc01]
gi|44888226|sp|Q8PWA7.1|MUTS_METMA RecName: Full=DNA mismatch repair protein MutS
gi|20906191|gb|AAM31379.1| DNA mismatch repair protein [Methanosarcina mazei Go1]
gi|452100167|gb|AGF97107.1| DNA mismatch repair protein MutS [Methanosarcina mazei Tuc01]
Length = 900
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 7/214 (3%)
Query: 646 NGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV 701
+G P G V N +M L+TGPN GKS+ +R +++ G V
Sbjct: 604 DGRHPVVESTVSGGFVPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQAGSFV 663
Query: 702 PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTE 761
PA ASI D + + ++D A G+S+F VEM E+ +I+ + +SLVL+DEI RGT
Sbjct: 664 PASYASIGVIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTS 723
Query: 762 TAKGTCIAGSIIETLDNIGCLGI---VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP 818
T G IA +++E L N G +GI +TH H + SL K+K + + + V
Sbjct: 724 TYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQLTSLEEKLKRVKNYHIAVKEEGHELVF 783
Query: 819 TWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
K+V G S A+ GVPE +I+RA ++
Sbjct: 784 LRKIVPGATDRSYGIHVARLAGVPEKVIERANEI 817
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRP-ESIPKAGCPVVNLRQT 108
K +P ++ R+GDFYE+ G DA + + L G R E +P AG P +
Sbjct: 16 KQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRSGERMPLAGIPYHAIDTY 75
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L GY V I E+++ P QA+ R + PG+
Sbjct: 76 LPRLINKGYKVAICEQLEDPKQAKGVVKRGVVRVVTPGT 114
>gi|418160815|ref|ZP_12797511.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17227]
gi|353820080|gb|EHE00268.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17227]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|306828748|ref|ZP_07461940.1| DNA mismatch repair protein MutS [Streptococcus mitis ATCC 6249]
gi|304428926|gb|EFM32014.1| DNA mismatch repair protein MutS [Streptococcus mitis ATCC 6249]
Length = 844
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +KN + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESILKNLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|395243133|ref|ZP_10420120.1| DNA mismatch repair protein mutS [Lactobacillus hominis CRBIP
24.179]
gi|394484363|emb|CCI81128.1| DNA mismatch repair protein mutS [Lactobacillus hominis CRBIP
24.179]
Length = 860
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
F+ VSE + +V P + D +NG P + GS + N + M +F
Sbjct: 550 FSTVSE--QNNYVRPTMTS---DDNEINVVNGRHPVVEQVMSAGSFIPNDIKMTKGTDIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQVGCFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANEALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +++ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLEHLENIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPRKVLREA 783
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKQQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 114
>gi|384439078|ref|YP_005653802.1| DNA mismatch repair protein mutS [Thermus sp. CCB_US3_UF1]
gi|359290211|gb|AEV15728.1| DNA mismatch repair protein mutS [Thermus sp. CCB_US3_UF1]
Length = 808
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 103/190 (54%), Gaps = 5/190 (2%)
Query: 661 VHNTVDMQ-SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I+ +
Sbjct: 565 VPNDLEMAGELVLVTGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAELPLFDRILTRIG 624
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A G+S+F VEM E+ I+ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 625 ASDDLAGGRSTFMVEMEEVALILKEATERSLVLLDEVGRGTSSLDGVAIATAVAEALHER 684
Query: 780 GCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
C + +TH + +LPL ++KN A E G +++ G +S E A+
Sbjct: 685 RCYALFATHYFELTALPLPRLKNLHVAAKEEE---GGLTFYHQVLPGPASKSYGVEVARL 741
Query: 839 EGVPETIIQR 848
G+P +++R
Sbjct: 742 AGLPPAVVER 751
Score = 42.7 bits (99), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN-PFGGLRPESIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 13 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLALTHKSSKDFTTPMAGIPI 72
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + + ++V+ +A R ++ PG+
Sbjct: 73 RAFDAYAERLLKLGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 117
>gi|217077343|ref|YP_002335061.1| DNA mismatch repair protein MutS [Thermosipho africanus TCF52B]
gi|217037198|gb|ACJ75720.1| DNA mismatch repair protein MutS [Thermosipho africanus TCF52B]
Length = 817
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 108/196 (55%), Gaps = 4/196 (2%)
Query: 661 VHNTVDMQSL---FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M SL +++TGPN GKS+ +R + +++ G VPA++A +P FD I
Sbjct: 576 VPNDIYMDSLRRMYIITGPNMSGKSTYIRQVGLIAVMAQIGCFVPAKNAKLPIFDRIFTR 635
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D + GKS+F VEMSE+ I++ T SLVL+DE+ RGT T G IA ++ E +
Sbjct: 636 MGARDDISTGKSTFLVEMSEVALILSKATKDSLVLLDEVGRGTSTFDGISIAWAMSEYIY 695
Query: 778 N-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
N I C I +TH + L + E + V K+VDG+ S E A
Sbjct: 696 NEIKCKTIFATHFTELTELSDVYNGIKNLTIEVEETNDGIVFLHKVVDGVADRSYGIEVA 755
Query: 837 KREGVPETIIQRAEDL 852
K GVP+ +++RA+++
Sbjct: 756 KIAGVPDGVVERAKEI 771
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + K + ++L R+GDFYEA DA I+ + LN R ++ P AG P L
Sbjct: 10 QYMDIKKNYEDAIVLFRLGDFYEAFFEDAEIISKV--LNIVLTKR-QNAPMAGIPHHALD 66
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L +GY V I E+++ P+QA+ R ++ PG+
Sbjct: 67 NYLKKLVDSGYKVAICEQMEDPSQAKGIVRREVTRVITPGT 107
>gi|123969386|ref|YP_001010244.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str.
AS9601]
gi|189083174|sp|A2BTM6.1|MUTS_PROMS RecName: Full=DNA mismatch repair protein MutS
gi|123199496|gb|ABM71137.1| putative DNA mismatch repair protein [Prochlorococcus marinus str.
AS9601]
Length = 913
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q L +LTGPN GKS +R + +L G VPA +A I D I + + D +
Sbjct: 711 DNQKLIILTGPNASGKSCFIRQLGLIQILTQIGSFVPANNAEIKIADRIFTRIGAVDDQS 770
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEMSE SI+ TS SLVL+DEI RGT T G IA S+ E L I C I
Sbjct: 771 SGQSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIQCNTI 830
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L KN + E + Q + + ++V G +S E AK GVP+
Sbjct: 831 FATHYHELNYLKNTNKNIQNFQVLVEQNNDQLIFSHRIVKGGSNKSYGIEAAKLAGVPKE 890
Query: 845 IIQRAEDL 852
+I++A+ +
Sbjct: 891 VIEKAKSV 898
>gi|116514520|ref|YP_813426.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|122274748|sp|Q048Y4.1|MUTS_LACDB RecName: Full=DNA mismatch repair protein MutS
gi|116093835|gb|ABJ58988.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 856
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + M S++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 587 GSYIPNDLVMDEDTSIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + +SRSLVL DEI RGT T G +AG+II+
Sbjct: 647 FTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAIIK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKTLFATHYHELTELDETLLHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 767 HVAKLAGLPRAVLREASSM 785
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
Q K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 QIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELT-LTHRSNKSENPIPMAGVPHMAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|239618478|ref|YP_002941800.1| DNA mismatch repair protein MutS [Kosmotoga olearia TBF 19.5.1]
gi|239507309|gb|ACR80796.1| DNA mismatch repair protein MutS [Kosmotoga olearia TBF 19.5.1]
Length = 823
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
S ++LTGPN GKS+ +R + SL+ G VPA+ A +P +D I + + D A G
Sbjct: 597 HSFYILTGPNMSGKSTYIRQVALISLMAQVGSFVPAKRAILPVYDRIFTRIGARDDVAGG 656
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
KS+F VEM E +I++ T SLV++DE+ RGT T G IA ++ E + + IGC I +
Sbjct: 657 KSTFLVEMMETATILSQATEDSLVVLDEVGRGTSTFDGISIAWAVSEYIYEAIGCHTIFA 716
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH + L + K + ++ + K+VDG+ +S + AK G+P+ ++
Sbjct: 717 THFTELTELSQMYEGINNKTIEVREIEDGVIFLHKVVDGVASQSHGIDVAKLAGLPDIVL 776
Query: 847 QRAEDL 852
QRA ++
Sbjct: 777 QRAREI 782
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE 93
+KN SL + + L+ K K+ +LL R+GDFYE DA ++ E L
Sbjct: 1 MKNKSLT--PMMRQYLEIKEKYKDCILLFRLGDFYETFFEDARVISEELQLVLTSR---N 55
Query: 94 SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
P AG P L Q + L GY V I ++V+ P A+ R ++ PG+
Sbjct: 56 GHPMAGVPYHALDQYVKKLISAGYKVAICDQVEDPATAKGLVKREVTRVITPGT 109
>gi|94986680|ref|YP_594613.1| DNA mismatch repair protein MutS [Lawsonia intracellularis
PHE/MN1-00]
gi|442555502|ref|YP_007365327.1| DNA mismatch repair protein MutS [Lawsonia intracellularis N343]
gi|166232123|sp|Q1MRT4.1|MUTS_LAWIP RecName: Full=DNA mismatch repair protein MutS
gi|94730929|emb|CAJ54292.1| Mismatch repair ATPase (MutS family) [Lawsonia intracellularis
PHE/MN1-00]
gi|441492949|gb|AGC49643.1| DNA mismatch repair protein MutS [Lawsonia intracellularis N343]
Length = 893
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 148/302 (49%), Gaps = 17/302 (5%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQT-KINILVFASMLLVIGKALFA 617
E ++T ++++ ER A K +L + L EL + + IL AS++ + L+
Sbjct: 522 ERYTTEELKDLEERLLSATEKRNTLEYKLFQKLREELVSIRPRILFMASLIAQLD--LWQ 579
Query: 618 HVSE-GRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM-----QSLF 671
+++ R W P L L N G P ++ G +V D+ + +
Sbjct: 580 SLADVAIRHNWNKPTL----LTNNNIFIREGRHPV-IESIIGKSVFVPNDLVMDETRRML 634
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS++LR LL G VPA A I D I + + D+ A G+S+F
Sbjct: 635 LITGPNMAGKSTVLRQTAIICLLAHMGSFVPATEAQIGICDRIFSRVGASDNLARGQSTF 694
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGIVSTH 788
VEM E I+ TSRSLV++DEI RGT T G +A ++ E L D+ G + +TH
Sbjct: 695 MVEMMETARILRQATSRSLVILDEIGRGTSTFDGLALAWAVAEDLVCKDHDGVRTLFATH 754
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L K+ + + + + V ++L+ G S E A+ GVP+++IQR
Sbjct: 755 YHELTALEEKLTGVHTMTIAIRHWNDELVFLYRLIPGPADRSYGIEVARLAGVPQSVIQR 814
Query: 849 AE 850
A+
Sbjct: 815 AK 816
>gi|303254066|ref|ZP_07340182.1| DNA mismatch repair protein [Streptococcus pneumoniae BS455]
gi|302598976|gb|EFL66006.1| DNA mismatch repair protein [Streptococcus pneumoniae BS455]
Length = 844
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G +PAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYIPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFY+ ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYDLFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|253577127|ref|ZP_04854448.1| DNA mismatch repair protein MutS [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843509|gb|EES71536.1| DNA mismatch repair protein MutS [Paenibacillus sp. oral taxon 786
str. D14]
Length = 951
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 1/185 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D S+ L+TGPN GKS+ +R + S+L G VPA A IP D I + + D
Sbjct: 602 DEASILLITGPNMAGKSTYMRQVALISILAQIGSFVPAAKAEIPLVDRIFTRIGAADDLI 661
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM++I+ + T RSL++IDE+ RGT T++G IA ++IE + D IGC +
Sbjct: 662 GGQSTFMVEMADIQIMTEKATPRSLIIIDELGRGTSTSEGMAIAQAVIEYVHDRIGCKAL 721
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
VSTH H + L ++ +M + + KL+ G S A+ G+P+
Sbjct: 722 VSTHFHELAYLEHSLRGLNNYSMAVQESGDKVHFLRKLIPGAADTSYGIYCARLAGLPDE 781
Query: 845 IIQRA 849
II RA
Sbjct: 782 IIGRA 786
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + + + G G E IP G P +
Sbjct: 10 QYLRIKAEAQDAFLFFRLGDFYEMFFEDAILAAKELEITLTGRDGGAEEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+++ P+Q + R I PG+
Sbjct: 70 ADNYIHRLIEKGYKVAICEQMEDPSQTKGMVRREIVRVITPGT 112
>gi|251778099|ref|ZP_04821019.1| DNA mismatch repair protein MutS [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243082414|gb|EES48304.1| DNA mismatch repair protein MutS [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 941
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 4/202 (1%)
Query: 654 DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
D + N D + L L+TGPN GKS+ +R + +L+ G VPA SA+I D
Sbjct: 593 DFVSNNTALNQTD-KELLLITGPNMAGKSTYMRQVALITLMAQMGSFVPATSANISICDK 651
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ TS SLVL+DE+ RGT T G IA S+I
Sbjct: 652 IFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGTSTYDGLSIAWSVI 711
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + ++ C + +TH H + L + ++ + L V K+V+G ES
Sbjct: 712 EYITKNKDLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVVFLRKIVEGGADES 771
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +I RA ++
Sbjct: 772 YGIEVAKLAGLPENVINRAREI 793
>gi|402300559|ref|ZP_10820047.1| DNA mismatch repair protein MutS [Bacillus alcalophilus ATCC 27647]
gi|401724284|gb|EJS97659.1| DNA mismatch repair protein MutS [Bacillus alcalophilus ATCC 27647]
Length = 873
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 110/215 (51%), Gaps = 6/215 (2%)
Query: 657 EGSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
+G V N V MQ+ + L+TGPN GKS+ +R + ++ G VPAE+ +P FD
Sbjct: 585 KGDYVANDVQMQAEREMLLITGPNMAGKSTYMRQLALIVVMAQIGSYVPAEAVELPIFDQ 644
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A G+S+F VEM E + +T + SL+L+DEI RGT T G +A SII
Sbjct: 645 IFTRIGAADDLASGQSTFMVEMLETQYALTKASQNSLILLDEIGRGTSTYDGIALAQSII 704
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + D + + STH H + SL + + + DG V K++DG S
Sbjct: 705 EYIHDEVKAKTLFSTHYHELTSLEESLDHLKNVHVSATEEDGHVVFLHKVIDGQADRSYG 764
Query: 833 FETAKREGVPETIIQRAEDLYIAC--GVNCVMIAA 865
A+ +P + RAE+L G+ + +AA
Sbjct: 765 IYVAELAKMPTAVTSRAEELLFQLEQGMKQMPVAA 799
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GLRPESIPKAGCPVVNL 105
+ L+ K++ L R+GDFYE DA + + G G E IP G P +
Sbjct: 10 QYLEIKAQHADAFLFFRLGDFYELFHEDAIKAAQELEITLTGRGKGDERIPMCGVPHHSA 69
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
Q + L GY + I E+V+ P A+ R + PG+
Sbjct: 70 EQYMVRLIEKGYKIAICEQVEDPAVAKGVVKREVVRILTPGT 111
>gi|418029374|ref|ZP_12667917.1| hypothetical protein LDBUL1632_00711 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354690049|gb|EHE90006.1| hypothetical protein LDBUL1632_00711 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 856
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 109/200 (54%), Gaps = 4/200 (2%)
Query: 657 EGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
+GS + N + M S++L+TGPN GKS+ +R + +++ G VPA+SA +P FD
Sbjct: 586 DGSYIPNDLVMDEDTSIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQ 645
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D GKS+F VEMSE + +SRSLVL DEI RGT T G +AG+II
Sbjct: 646 VFTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAII 705
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
+ L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 706 KYLHDKVGAKTLFATHYHELTELDETLLHLKNIHVGATEENGKLIFLHKILPGPADQSYG 765
Query: 833 FETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 766 IHVAKLAGLPRAVLREASSM 785
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
Q K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 QIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELT-LTHRSNKSENPIPMAGVPHMAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|213406337|ref|XP_002173940.1| DNA mismatch repair protein msh6 [Schizosaccharomyces japonicus
yFS275]
gi|212001987|gb|EEB07647.1| DNA mismatch repair protein msh6 [Schizosaccharomyces japonicus
yFS275]
Length = 1178
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 11/202 (5%)
Query: 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G+ V N V + ++ +LTGPN GKS+LLR C A ++ G VPA+ A + D+
Sbjct: 927 GTFVPNDVQLGGMSANMIVLTGPNMAGKSTLLRQTCLAVIMAQLGCYVPAKHARLTPMDS 986
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D +S+F VE+SE + I+ +T R+LV++DE+ RGT T G IA +++
Sbjct: 987 IHTRLGANDDIMSSRSTFMVELSETKKILDESTPRTLVILDELGRGTSTYDGQAIAYAVL 1046
Query: 774 ETL-DNIGCLGIVSTHLHGI---FSLPLKIKNAAYKAMGTEYLDGQTVP-TWKLVDGICR 828
L NIGCLG STH + F +++ A+ E G+ V +KLVDG+C
Sbjct: 1047 HHLVSNIGCLGFFSTHYQSLCTDFVHHKQLRMMQMSALVDEA--GRRVTFLYKLVDGVCS 1104
Query: 829 ESLAFETAKREGVPETIIQRAE 850
+S A VPE ++Q AE
Sbjct: 1105 KSYGMNVASMASVPEEVVQVAE 1126
>gi|288556899|ref|YP_003428834.1| DNA mismatch repair protein MutS [Bacillus pseudofirmus OF4]
gi|288548059|gb|ADC51942.1| DNA mismatch repair protein MutS [Bacillus pseudofirmus OF4]
Length = 880
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 11/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAE-GSAVHNTVDM---QSLF 671
FA VSE ++ + P L+ + + L G P + G V N V + + +
Sbjct: 549 FATVSE--KQHYQKPVLRPV----GDVLIEGGRHPVVESVIQKGEYVPNDVALHPGREML 602
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + S++ G VPAE A +P FD I + + D A G+S+F
Sbjct: 603 LITGPNMAGKSTYMRQLALLSIMAQIGCFVPAEKAELPIFDQIFTRIGAADDLASGQSTF 662
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + ++ T SL+L+DEI RGT T G +A +IIE + N IG + STH H
Sbjct: 663 MVEMLETQYALSKATECSLILLDEIGRGTSTYDGMALAQAIIEYIHNEIGAKTLFSTHYH 722
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L ++++ + DG+ V K+VDG S A+ +P+ + RAE
Sbjct: 723 ELTALSDELEHVQNVHVSAVEEDGKVVFLHKVVDGQADRSYGIYVAQLAELPKEVTSRAE 782
Query: 851 DL 852
L
Sbjct: 783 QL 784
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GLRPESIPKAGCPVVNL 105
+ + K+++ L R+GDFYE DA + + G G + IP G P +
Sbjct: 10 QYVDIKAQYEDAFLFFRLGDFYEMFFDDAVKAAQELEITLTGRGQGEDRIPMCGVPYHSA 69
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
Q + L GY + I E+V+ P A+ R + PG+
Sbjct: 70 DQYMSRLVEKGYKIAICEQVEDPKTAKGVVKREVVKMLTPGT 111
>gi|448464317|ref|ZP_21598418.1| DNA mismatch repair protein MutS, partial [Halorubrum kocurii JCM
14978]
gi|445815736|gb|EMA65657.1| DNA mismatch repair protein MutS, partial [Halorubrum kocurii JCM
14978]
Length = 432
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 3/203 (1%)
Query: 656 AEGSAVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
AE S V N D+ S+ ++TGPN GKS+ +RSI A +L G VPA++ASIP FD
Sbjct: 119 AEASFVPNDADLPCGSIAVITGPNMSGKSTYMRSIALAVVLAQTGSFVPAQAASIPVFDR 178
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D A G+S+F EMSE+ I+ SLVL+DE+ RGT T G IA +
Sbjct: 179 VFTRVGASDDIAGGQSTFMREMSELTEILHDAGPDSLVLLDEVGRGTATTDGRAIARAAA 238
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + D +G + +TH H + L + + A DG ++V G S
Sbjct: 239 EFIHDELGATALFATHYHDLTDLAAERERAFNLHFTATREDGDVTFLHRVVPGASSSSYG 298
Query: 833 FETAKREGVPETIIQRAEDLYIA 855
E A+ GVP +++R+ DL A
Sbjct: 299 VEVAELAGVPAPVVERSRDLVAA 321
>gi|448490537|ref|ZP_21607995.1| DNA mismatch repair protein MutS [Halorubrum californiensis DSM
19288]
gi|445693655|gb|ELZ45797.1| DNA mismatch repair protein MutS [Halorubrum californiensis DSM
19288]
Length = 977
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 6/234 (2%)
Query: 625 RKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ--SLFLLTGPNGGGKS 682
R +V P L++ D + + G + E S V N D+ S+ ++TGPN GKS
Sbjct: 625 RDYVRPELRE---DSTEGVAIEGGRHPVVERTEESFVPNDADLPRGSVAVITGPNMSGKS 681
Query: 683 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 742
+ +RS+ A +L G VPA++A++P FD + + + D A G+S+F EMSE+ I+
Sbjct: 682 TYMRSVALAVVLAQTGSFVPAQAATLPVFDRLFTRVGASDDIAGGQSTFMREMSELTEIL 741
Query: 743 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKN 801
+ SLVL+DE+ RGT T G IA + E L D +G + +TH HG+ L + +
Sbjct: 742 HDADADSLVLLDEVGRGTATTDGRAIARAAAEFLHDELGATALFATHYHGLTDLADERER 801
Query: 802 AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA 855
DG ++V G S E A+ GVP +++RA DL A
Sbjct: 802 VFNLHFTATREDGDVTFLHRVVPGASSSSYGVEVAELAGVPGPVVERARDLVAA 855
>gi|420241263|ref|ZP_14745411.1| DNA mismatch repair protein MutS [Rhizobium sp. CF080]
gi|398072004|gb|EJL63240.1| DNA mismatch repair protein MutS [Rhizobium sp. CF080]
Length = 910
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 147/303 (48%), Gaps = 13/303 (4%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLE----LLRGLSSELQTKINILVFASMLLVIGKALF 616
F+T ++ + R A KA LE ++ ++SE + I A ++ + AL
Sbjct: 540 FTTTELADLESRIANAADKALTIELEAFDKMVAAVTSEAEA-IKAGARALAVIDVAAALA 598
Query: 617 AHVSEGRRRKWVFPALKDIELDGA------NCLKMNGLSPYWFDAAEGSAVHNTVDMQSL 670
E R+ + A + ++G L+ + P+ + + S HN + +L
Sbjct: 599 MLADEWSYRRPIVDASRMFAIEGGRHPVVEQALRKQSVGPFIANDCDLSP-HNGSEFGAL 657
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
+LLTGPN GGKS+ LR ++L G VPA SA I D + + + D A G+S+
Sbjct: 658 WLLTGPNMGGKSTFLRQNALIAILAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRST 717
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHL 789
F VEM E +I+ + RSLV++DEI RGT T G IA + +E L C G+ +TH
Sbjct: 718 FMVEMVETAAILNQASDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEANKCRGLFATHF 777
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + L K+ + M + DG+ + ++ G S + A+ G+P++++ RA
Sbjct: 778 HELTVLSEKLNRLSNATMRVKEWDGEVIFLHEVGPGAADRSYGIQVARLAGLPDSVVARA 837
Query: 850 EDL 852
D+
Sbjct: 838 RDV 840
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G IP G PV
Sbjct: 32 QYIEIKANNPGSLLFYRMGDFYELFFEDAVDASRALGITLTKRGQHLGRDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L G+ V + E+V+ P +A+ R S+ +
Sbjct: 92 ADDYLQKLISLGFRVAVCEQVEDPAEAKKRGSKSV 126
>gi|390453602|ref|ZP_10239130.1| DNA mismatch repair protein mutS [Paenibacillus peoriae KCTC 3763]
Length = 942
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 25/329 (7%)
Query: 579 KAKAKVLELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVSEGRRRKWVFPALK 633
+A+ K+++L L SEL++K+N+ + A + I + S R +V P L
Sbjct: 510 EAEDKMVDLEYTLFSELRSKLNVEIPRLQKLAEQVAEI-DVYQSMASVSAERGFVKPELT 568
Query: 634 DIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSI 688
G + + G P +GS + N ++ + L+TGPN GKS+ +R +
Sbjct: 569 T----GYDFVIEQGRHPVVEAVMKDGSFIANGTALEEADAHILLITGPNMAGKSTYMRQV 624
Query: 689 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748
+++ G VPA A +P D I + + D G+S+F VEM++I+ + T R
Sbjct: 625 ALIAIMAQIGCFVPAARAKVPMLDRIFTRIGAADDLIGGQSTFMVEMADIQVMTDKATPR 684
Query: 749 SLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807
SL++IDE+ RGT T++G IA ++IE + D IGC +VSTH H + L + + +M
Sbjct: 685 SLIIIDELGRGTSTSEGMAIAQAVIEFVHDIIGCKALVSTHFHELAHLEQSLPSLRNYSM 744
Query: 808 GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL---------YIACGV 858
+ + KL+ G S A+ G+P II+RA L + G
Sbjct: 745 AVQESGDKVNFLRKLIQGAASSSYGIYCARLAGLPSNIIERANGLLHGFEQAAAQVTAGT 804
Query: 859 NCVMIAAREQPPPSIIGASCVYVMLRPDK 887
V A E + G V M R ++
Sbjct: 805 ETVAGATEETAHRTRSGTGAVSSMNRENR 833
>gi|23099086|ref|NP_692552.1| DNA mismatch repair protein MutS [Oceanobacillus iheyensis HTE831]
gi|44888208|sp|Q8CXG6.1|MUTS_OCEIH RecName: Full=DNA mismatch repair protein MutS
gi|22777314|dbj|BAC13587.1| DNA mismatch repair protein (mismatch recognition step)
[Oceanobacillus iheyensis HTE831]
Length = 867
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 12/239 (5%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTV---DMQSLF 671
FA VSE +V P D +L G P +G+ V N V Q++
Sbjct: 550 FATVSESN--NYVRPDFNDEQLQVTK-----GRHPVVEQVMKDGTFVPNDVVFDKSQNML 602
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + S++G G +PAE A++ FD I + + D G+S+F
Sbjct: 603 LITGPNMSGKSTYMRQVALTSIMGQIGCFIPAEQATLCVFDQIFTRIGAADDLVSGQSTF 662
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E R ++ T RSL+L+DEI RGT T G +A +I+E + NI + STH H
Sbjct: 663 MVEMLEARHAISNATDRSLILLDEIGRGTSTYDGMALAQAIVEYIHHNIAAKTLFSTHYH 722
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ +L + + + E +G V ++ +G +S AK +P +I+RA
Sbjct: 723 ELTALEDSLHHLKNIHVRAEEHEGNVVFLHQIKEGAADQSYGIHVAKLADLPNELIERA 781
Score = 46.2 bits (108), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ +Q K+++ L R+GDFYE DA + L G + + IP G P +
Sbjct: 10 QYIQIKNEYKDAFLFYRLGDFYELFYEDATRAAQELEITLTKRAGGKGDPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AENYIKTLIDRGYKVAICEQVEDPKTAKGVVKREVVQMITPGT 112
>gi|402496510|ref|YP_006555770.1| DNA mismatch repair protein [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649783|emb|CCF77953.1| DNA mismatch repair protein [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 837
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 1/198 (0%)
Query: 657 EGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML 716
+G + N++++ + L+TGPN GKS+ LR ++L G VPA+SA I D I
Sbjct: 635 DGKFIANSINLVGMHLITGPNMAGKSTFLRQNALIAILAHMGSFVPADSAHIGVVDKIFS 694
Query: 717 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776
+ + D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE +
Sbjct: 695 RVGATDNVTAGYSTFMVEMLETATIVNQATERSLVILDEIGRGTGVYDGLSIAQAVIEHI 754
Query: 777 DNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
++ C I +TH H + + +KN + + +G+ V ++V+GI ES
Sbjct: 755 HDVNKCRAIFATHYHELTKVGKYLKNIKCFCVKVKEWNGKVVFLHEVVEGIADESYGIYV 814
Query: 836 AKREGVPETIIQRAEDLY 853
A+ G P++++ RA ++
Sbjct: 815 ARLAGFPDSVLDRASAVF 832
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+++ +L R+GDFYE DA + L G L ++IP G P N
Sbjct: 14 QYLNLKARYRDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNLCGQNIPMCGVPAHN 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L G+ V I ++++ +A+ R + I
Sbjct: 74 SESYLHKLIDLGFKVAICDQLETANEAKRRGHKSI 108
>gi|424834369|ref|ZP_18259080.1| DNA mismatch repair protein MutS [Clostridium sporogenes PA 3679]
gi|365978715|gb|EHN14784.1| DNA mismatch repair protein MutS [Clostridium sporogenes PA 3679]
Length = 932
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +L+ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITLMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|374323831|ref|YP_005076960.1| DNA mismatch repair protein mutS [Paenibacillus terrae HPL-003]
gi|357202840|gb|AET60737.1| DNA mismatch repair protein mutS [Paenibacillus terrae HPL-003]
Length = 938
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 14/238 (5%)
Query: 657 EGSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
+GS + N ++ + L+TGPN GKS+ +R + +++ G VPA A +P D
Sbjct: 589 DGSFIANGTALEEADAHILLITGPNMAGKSTYMRQVALIAIMAQIGCFVPAAHAKVPMLD 648
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
I + + D G+S+F VEM++I+ + T RSL++IDE+ RGT T++G IA ++
Sbjct: 649 RIFTRIGAADDLIGGQSTFMVEMADIQVMTDKATPRSLIIIDELGRGTSTSEGMAIAQAV 708
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
IE + D IGC +VSTH H + L + + +M + + KL+ G S
Sbjct: 709 IEFVHDTIGCKALVSTHFHELAHLEQSLSSLRNYSMAVQESGDKVNFLRKLILGAASSSY 768
Query: 832 AFETAKREGVPETIIQRAEDL---------YIACGVNCVMIAAREQPPPSIIGASCVY 880
A+ G+P+ II+RA L + G V +A + ++ G Y
Sbjct: 769 GIYCARLAGLPDNIIERANGLLHGFEHAAAQVTAGTEAVAVAKEKVVHRTVSGVGASY 826
>gi|407795672|ref|ZP_11142630.1| DNA mismatch repair protein MutS [Salimicrobium sp. MJ3]
gi|407020013|gb|EKE32727.1| DNA mismatch repair protein MutS [Salimicrobium sp. MJ3]
Length = 845
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 4/212 (1%)
Query: 645 MNGLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMV 701
+N P E V N + M ++FL+TGPN GKS+ +R + S++ G V
Sbjct: 570 VNSRHPVVEKVMEDEFVPNDIYMDESTNIFLITGPNMSGKSTYMRQMALTSVMAQIGSFV 629
Query: 702 PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTE 761
P E A +P FD I + + D G+S+F VEM E + +T T+RS++L DEI RGT
Sbjct: 630 PCEEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEANNAITHATNRSMILFDEIGRGTS 689
Query: 762 TAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTW 820
T G +A SI+E + +NI + STH H + +L ++ + + E +DG+ V
Sbjct: 690 TYDGMALAQSIVEYIHENIKAKTLFSTHYHELTTLESELGSLKNVHVRAEEVDGKVVFLH 749
Query: 821 KLVDGICRESLAFETAKREGVPETIIQRAEDL 852
++ +G +S A+ +P +I RAE L
Sbjct: 750 QVKEGAADKSYGIHVAELAELPSEVITRAERL 781
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN----PFGGLRPESIPKAGCPV 102
+ L+ K+ + L R+GDFYE DA + + GG + IP G P
Sbjct: 10 QYLKIKADYKDSFLFFRLGDFYEMFFDDALKAAQELEITLTARDGGG---DKIPMCGVPY 66
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L GY + + E+V+ P QA+ R + PG+
Sbjct: 67 HSSENYIKQLVEKGYKIAVCEQVEDPKQAKGVVKREVVQLITPGT 111
>gi|448331150|ref|ZP_21520420.1| DNA mismatch repair protein MutS, partial [Natrinema versiforme JCM
10478]
gi|445609976|gb|ELY63761.1| DNA mismatch repair protein MutS, partial [Natrinema versiforme JCM
10478]
Length = 428
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 6/302 (1%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T +++E ++ A +A + EL + E+ ++ + + L AL +
Sbjct: 59 ERFVTPELKEREDQIVGAEERADEREYELFCDVRREIADEVERVQGLADALATLDALVSL 118
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS---LFLLTG 675
+ + + P + +E DG+ L++ G + + S V N S L ++TG
Sbjct: 119 ATAAAQYDYCRPEI--LERDGSQTLEIEGGRHPVVERTQESFVPNDARFASDRRLAVITG 176
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ +R + LL G VPA +A + D I + + D A G+S+F VEM
Sbjct: 177 PNMSGKSTYMRQVAQIVLLAQVGSFVPASAARLTPVDRIFTRVGASDDIAGGRSTFMVEM 236
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
E+ +I+ SLVL+DE+ RGT TA G IA +I E L D +G + +TH H +
Sbjct: 237 DELATILREADEHSLVLLDEVGRGTSTADGMAIAQAITEHLHDQVGATTLFATHHHPLTE 296
Query: 795 LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYI 854
L + A + DG+ V ++ G S E A GVPE +++R+ +L
Sbjct: 297 LADDLAAAFTLHFDVDQEDGEVVFHHEITPGAATGSYGVEVATAAGVPENVVERSRELVA 356
Query: 855 AC 856
A
Sbjct: 357 AS 358
>gi|289580016|ref|YP_003478482.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
gi|448281256|ref|ZP_21472563.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
gi|289529569|gb|ADD03920.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
gi|445579186|gb|ELY33582.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
Length = 917
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 7/301 (2%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T +++E + A +A + EL + S++ ++ + + L AL +
Sbjct: 549 ERFVTPELKEREDEIVGAEERADEREYELFCAVRSDIGDEVERVQGLADALATLDALVSL 608
Query: 619 VSEGRRRKWVFPALKDIE---LDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFL 672
+ + + P + D + +DG + + G + + S V N Q L +
Sbjct: 609 ATVAAQYDYCRPEILDPDADHIDGGVQIDITGGRHPVVERTQESFVPNGAQFDSEQRLAV 668
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + LL G VPAESA + + + + + D A G+S+F
Sbjct: 669 ITGPNMSGKSTYMRQVAQLVLLAQVGSFVPAESARLTPVERVFTRVGASDDIAGGRSTFM 728
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +TH H
Sbjct: 729 VEMDELATILRDADERSLVLLDEVGRGTSTADGLAIAQAITEHLHDAVGATTLFATHHHP 788
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ NA E DG+ V ++ G S E A GVPE ++ R+ +
Sbjct: 789 LTELAEELPNAFTLHFEVEQTDGEVVFHHEIEPGAATGSYGVEVATAAGVPEAVVDRSRE 848
Query: 852 L 852
L
Sbjct: 849 L 849
>gi|403234715|ref|ZP_10913301.1| DNA mismatch repair protein MutS [Bacillus sp. 10403023]
Length = 351
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 10/241 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIEL---DGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFL 672
FA +SE R + P + EL DG + + + + + H+ +SL L
Sbjct: 36 FATISE--ERHYCMPRFSEDELSIKDGRHPVVEKVMQAQEYVPNDCVMEHD----RSLLL 89
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R I S+L G VPA A +P +D + + + D G+S+F
Sbjct: 90 ITGPNMSGKSTYMRQIALTSILAQIGCFVPASEAVLPIYDQVFTRIGAADDLISGQSTFM 149
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E ++ + TS+SL+L DEI RGT T G +A +IIE + NIG + STH H
Sbjct: 150 VEMLEAKNAIVNATSKSLLLFDEIGRGTSTYDGMALAQAIIEYIHQNIGAHTLFSTHYHE 209
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L K++N + + V K+ +G +S AK +PE +I+RA +
Sbjct: 210 LTDLESKLENLVNVHVSAIEENDNVVFLHKIKEGAADKSYGIHVAKLAELPENLIKRANE 269
Query: 852 L 852
+
Sbjct: 270 I 270
>gi|418974046|ref|ZP_13521981.1| DNA mismatch repair protein MutS [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383346023|gb|EID24099.1| DNA mismatch repair protein MutS [Streptococcus pseudopneumoniae
ATCC BAA-960]
Length = 844
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVEIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|386587200|ref|YP_006083602.1| DNA mismatch repair protein MutS [Streptococcus suis D12]
gi|353739346|gb|AER20354.1| DNA mismatch repair protein MutS [Streptococcus suis D12]
Length = 846
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 587 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 645
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 646 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 705
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 706 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 765
Query: 838 REGVPETIIQRAE 850
G+PE +++RA+
Sbjct: 766 IAGMPEELLERAD 778
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L G+ V I E+++ P QA R + PG+
Sbjct: 71 AAQQYIDTLVELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|386360168|ref|YP_006058413.1| DNA mismatch repair protein MutS [Thermus thermophilus JL-18]
gi|383509195|gb|AFH38627.1| DNA mismatch repair protein MutS [Thermus thermophilus JL-18]
Length = 811
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I +
Sbjct: 568 VPNDLEMAHELVLVTGPNMAGKSTFLRQTALIALLAQIGSFVPAEEAELPLFDGIYTRIG 627
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A GKS+F VEM E+ ++ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 628 ASDDLAGGKSTFMVEMEEVALVLKEATERSLVLLDEVGRGTSSLDGVAIATALAEALHER 687
Query: 780 GCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
C + +TH + +L L ++KN A E G V +++ G +S E A+
Sbjct: 688 RCYTLFATHYFELTALALPRLKNLHVAAKEEE---GGLVFYHQVLPGPASKSYGVEVAEM 744
Query: 839 EGVPETIIQRAEDLYIACGVN 859
G+P+ ++ RA+ L A
Sbjct: 745 AGLPKEVVDRAKALLRAMAAR 765
Score = 43.1 bits (100), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 16 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPI 75
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + + ++V+ +A R ++ PG+
Sbjct: 76 RAFDAYAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 120
>gi|386723616|ref|YP_006189942.1| DNA mismatch repair protein [Paenibacillus mucilaginosus K02]
gi|384090741|gb|AFH62177.1| DNA mismatch repair protein [Paenibacillus mucilaginosus K02]
Length = 925
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S L+TGPN GKS+ +R + L+ G VPA+ A +P D I + + D G+
Sbjct: 607 STMLITGPNMAGKSTYMRQVAMICLMAQIGCFVPAKRAKVPVTDRIFTRIGAADDLIGGQ 666
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM +I+ + T +SLV+IDE+ RGT T +G IA ++IE L D IGC +VST
Sbjct: 667 STFMVEMMDIQVMTEKATPKSLVIIDELGRGTSTGEGMAIAQAVIEYLHDRIGCKTLVST 726
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L +K+ M + Q KLV G S A+ G+PE+II
Sbjct: 727 HFHELAHLEESLKDLRNYCMAVKESGQQVTFLRKLVRGAASTSYGIYCAQIAGLPESIIG 786
Query: 848 RAEDL 852
R+ +L
Sbjct: 787 RSYEL 791
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K++ P L R+GDFYE ++A +E GG E IP G P
Sbjct: 10 QYLAVKAEVPDAFLFFRLGDFYEMFFEDAVNAARELEITLTGREGG--GERIPMCGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L G+ V I E+V+ P +A+ R I PG+
Sbjct: 68 SAENYIARLIEKGFKVAICEQVEDPAEAKGVVRREIVRIVTPGT 111
>gi|417091961|ref|ZP_11956695.1| DNA mismatch repair protein MutS [Streptococcus suis R61]
gi|353532530|gb|EHC02199.1| DNA mismatch repair protein MutS [Streptococcus suis R61]
Length = 846
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 587 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 645
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 646 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 705
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 706 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 765
Query: 838 REGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSII 874
G+PE +++RA+ I + A P PS++
Sbjct: 766 IAGMPEELLERAD--RILQTLENQAPTAPTHPIPSVV 800
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+ +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKANYPDAFLLFRMGDFYELFYEDAVEAAQILELS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L G+ V I E+++ P QA R + PG+
Sbjct: 71 AAQQYIDTLVELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|448437428|ref|ZP_21587451.1| DNA mismatch repair protein MutS [Halorubrum tebenquichense DSM
14210]
gi|445681155|gb|ELZ33594.1| DNA mismatch repair protein MutS [Halorubrum tebenquichense DSM
14210]
Length = 947
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 162/367 (44%), Gaps = 12/367 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E + T +++E E A +A A EL + + ++ + + L AL +
Sbjct: 528 ERYVTPELKEREEAIVGAAERADAMEYELFVDVRERVASETERIQALADALAELDALASL 587
Query: 619 VSEGRRRKWVFPALKDI-ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ--SLFLLTG 675
+ +V P L+D E D + + G + E S V N D+ S+ ++TG
Sbjct: 588 ATVAVEHDYVRPELRDSSETDADAGIAIEGGRHPVVERTEASFVPNDADLPRGSVAVITG 647
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ +RS+ A +L G VPA++AS+P FD + + + D A G+S+F EM
Sbjct: 648 PNMSGKSTYMRSVALAVVLAQTGSFVPAQAASLPVFDRVFTRVGASDDIAGGQSTFMREM 707
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
SE+ I+ SLVL+DE+ RGT T G IA + E L D +G + +TH H +
Sbjct: 708 SELTEILHDAGPDSLVLLDEVGRGTATTDGRAIARAAAEFLHDELGATALFATHYHELTD 767
Query: 795 LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYI 854
L + + DG ++V G S E A+ GVP ++ RA DL
Sbjct: 768 LADERERVFNLHFTATREDGDVTFLHRIVPGASSSSYGVEVAELAGVPGPVVDRARDLVA 827
Query: 855 ACGVNCVMIAAREQPP--PSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQS 912
G E P P++ GAS R + L G +G G + +
Sbjct: 828 EEGDRRGESEPAETPADDPAVEGASSSGSSSR--EPLNDGN----EGSTETEDGTDDPED 881
Query: 913 ASFLYFV 919
AS F+
Sbjct: 882 ASLREFL 888
>gi|227513115|ref|ZP_03943164.1| DNA mismatch repair protein [Lactobacillus buchneri ATCC 11577]
gi|227083690|gb|EEI19002.1| DNA mismatch repair protein [Lactobacillus buchneri ATCC 11577]
Length = 862
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 147/303 (48%), Gaps = 23/303 (7%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN-ILVFASMLLVIGK-ALF 616
E FST +++E EA ++K +L + +++ I I A + I F
Sbjct: 484 ERFSTPELKEKEALILEAQEQSKTLEYKLFVRIRDDIKKSIKRIQALADAVASIDVLQSF 543
Query: 617 AHVSEGRRRKWVFPALKDIE----LDGANCL--KMNGLSPYWFDAAEGSAVHNTVDM--- 667
A+VSE R ++ P L + +DG + + K+ G Y V N VDM
Sbjct: 544 ANVSEEYR--FIRPTLTNDHRVKVIDGRHPVVEKVLGHQQY---------VPNNVDMGED 592
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
S+ L+TGPN GKS+ +R + ++ G VPA+ A++P FD I + + D G
Sbjct: 593 TSVLLITGPNMSGKSTYMRQMALCVIMNQMGCFVPAKKATLPVFDKIFTRIGAADDLISG 652
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E + T SL+L DEI RGT T G +A +IIE + +NIG + S
Sbjct: 653 QSTFMVEMKEANDAIENATPNSLILFDEIGRGTATYDGMALAQAIIEYVHNNIGAKTLFS 712
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + SL +K +G +G+ V K+ G +S AK G+P ++
Sbjct: 713 THYHELTSLDESLKQLQNVHVGATESNGELVFLHKIQPGPADKSYGIHVAKLAGLPNGLL 772
Query: 847 QRA 849
+RA
Sbjct: 773 KRA 775
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 48 MLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR--PESIPKAGCPV 102
M+Q+ K ++P L R+GDFYE DA + L R +P G P
Sbjct: 2 MVQYQKIKDQYPDAFLFYRLGDFYELFNDDAIKGSQLLELTLTNRSRNAENPVPMCGVPH 61
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
+ +D L GY V I E+++ P + R + PG+ G
Sbjct: 62 KAAQNYIDILVDQGYKVAICEQMEDPRLTKGMVKRAVIQLVTPGTQVDVG 111
>gi|337747160|ref|YP_004641322.1| DNA mismatch repair protein [Paenibacillus mucilaginosus KNP414]
gi|336298349|gb|AEI41452.1| DNA mismatch repair protein [Paenibacillus mucilaginosus KNP414]
Length = 925
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S L+TGPN GKS+ +R + L+ G VPA+ A +P D I + + D G+
Sbjct: 607 STMLITGPNMAGKSTYMRQVAMICLMAQIGCFVPAKRAKVPVTDRIFTRIGAADDLIGGQ 666
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM +I+ + T +SLV+IDE+ RGT T +G IA ++IE L D IGC +VST
Sbjct: 667 STFMVEMMDIQVMTEKATPKSLVIIDELGRGTSTGEGMAIAQAVIEYLHDRIGCKTLVST 726
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L +K+ M + Q KLV G S A+ G+PE+II
Sbjct: 727 HFHELAHLEESLKDLRNYCMAVKESGQQVTFLRKLVRGAASTSYGIYCAQIAGLPESIIG 786
Query: 848 RAEDL 852
R+ +L
Sbjct: 787 RSYEL 791
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K++ P L R+GDFYE ++A +E GG E IP G P
Sbjct: 10 QYLAVKAEVPDAFLFFRLGDFYEMFFEDAVNAARELEITLTGREGG--GERIPMCGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L G+ V I E+V+ P +A+ R I PG+
Sbjct: 68 SAENYIARLIEKGFKVAICEQVEDPAEAKGVVRREIVRIVTPGT 111
>gi|182626334|ref|ZP_02954089.1| DNA mismatch repair protein MutS [Clostridium perfringens D str.
JGS1721]
gi|177908353|gb|EDT70898.1| DNA mismatch repair protein MutS [Clostridium perfringens D str.
JGS1721]
Length = 909
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|347753700|ref|YP_004861265.1| DNA mismatch repair protein MutS [Bacillus coagulans 36D1]
gi|347586218|gb|AEP02485.1| DNA mismatch repair protein MutS [Bacillus coagulans 36D1]
Length = 875
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 7/189 (3%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R I +L G VPA A +P FD I + + D G
Sbjct: 611 REILLITGPNMSGKSTYMRQIALTVILAQIGCFVPAREAELPVFDRIFTRIGAADDLISG 670
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E ++ + T RSL+L DEI RGT T G +A ++IE + D IG + S
Sbjct: 671 QSTFMVEMLEAKNAIANATERSLILFDEIGRGTSTYDGMALAQAMIEYIHDEIGAKTLFS 730
Query: 787 THLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
TH H + +L K++N AM +G+ V K+ +G +S AK G+PE
Sbjct: 731 THYHELTALSTELGKLQNVHVSAMEQ---NGKVVFLHKIKEGPADKSYGIHVAKLAGLPE 787
Query: 844 TIIQRAEDL 852
+I RAE +
Sbjct: 788 QVICRAEKI 796
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ LQ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 21 QYLQVKAEYQDAFLFFRLGDFYEMFFEDAIKASQELEITLTSRDGGGDEKIPMCGVPYHS 80
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P A+ R + PG+
Sbjct: 81 ASTYIEQLIDKGYKVAICEQMEDPKLAKGVVKREVIQLITPGT 123
>gi|227510187|ref|ZP_03940236.1| DNA mismatch repair protein [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190392|gb|EEI70459.1| DNA mismatch repair protein [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 862
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 147/303 (48%), Gaps = 23/303 (7%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN-ILVFASMLLVIGK-ALF 616
E FST +++E EA ++K +L + +++ I I A + I F
Sbjct: 484 ERFSTPELKEKEALILEAQEQSKTLEYKLFVRIRDDIKKSIKRIQALADAVASIDVLQSF 543
Query: 617 AHVSEGRRRKWVFPALKDIE----LDGANCL--KMNGLSPYWFDAAEGSAVHNTVDM--- 667
A+VSE R ++ P L + +DG + + K+ G Y V N VDM
Sbjct: 544 ANVSEEYR--FIRPTLTNDHRVKVIDGRHPVVEKVLGHQQY---------VPNNVDMGED 592
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
S+ L+TGPN GKS+ +R + ++ G VPA+ A++P FD I + + D G
Sbjct: 593 TSVLLITGPNMSGKSTYMRQMALCVIMNQMGCFVPAKKATLPVFDKIFTRIGAADDLISG 652
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E + T SL+L DEI RGT T G +A +IIE + +NIG + S
Sbjct: 653 QSTFMVEMKEANDAIENATPNSLILFDEIGRGTATYDGMALAQAIIEYVHNNIGAKTLFS 712
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + SL +K +G +G+ V K+ G +S AK G+P ++
Sbjct: 713 THYHELTSLDESLKQLQNVHVGATESNGELVFLHKIQPGPADKSYGIHVAKLAGLPNGLL 772
Query: 847 QRA 849
+RA
Sbjct: 773 KRA 775
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 48 MLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR--PESIPKAGCPV 102
M+Q+ K ++P L R+GDFYE DA + L R +P G P
Sbjct: 2 MVQYQKIKDQYPDAFLFYRLGDFYELFNDDAIKGSQLLELTLTNRSRNAENPVPMCGVPH 61
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
+ +D L GY V I E+++ P + R + PG+ G
Sbjct: 62 KAAQNYIDILVDQGYKVAICEQMEDPRLTKGMVKRAVIQLVTPGTQVDVG 111
>gi|110803440|ref|YP_698493.1| DNA mismatch repair protein MutS [Clostridium perfringens SM101]
gi|123047422|sp|Q0STR4.1|MUTS_CLOPS RecName: Full=DNA mismatch repair protein MutS
gi|110683941|gb|ABG87311.1| DNA mismatch repair protein MutS [Clostridium perfringens SM101]
Length = 910
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|18310137|ref|NP_562071.1| DNA mismatch repair protein MutS [Clostridium perfringens str. 13]
gi|44888232|sp|Q8XL87.1|MUTS_CLOPE RecName: Full=DNA mismatch repair protein MutS
gi|18144816|dbj|BAB80861.1| DNA mismatch repair protein [Clostridium perfringens str. 13]
Length = 909
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DDVINRAKEI 795
>gi|344210499|ref|YP_004794819.1| DNA mismatch repair protein [Haloarcula hispanica ATCC 33960]
gi|343781854|gb|AEM55831.1| DNA mismatch repair protein [Haloarcula hispanica ATCC 33960]
Length = 914
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 101/184 (54%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 644 LAVVTGPNMSGKSTYMRQVALICLLAQAGSFVPAKAADLPILDRVFTRVGASDDIAGGRS 703
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 704 TFMIEMTELATILDAATEDSLVLLDEVGRGTSTADGLAIARAVTEHLHDEVGAYTLFATH 763
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + A + T D +L G S E A GVPE++++R
Sbjct: 764 HHDLTAVAAALPGATNRHFETSRKDDDVRFDHELAPGPAAASYGVEVASMAGVPESVVER 823
Query: 849 AEDL 852
+ DL
Sbjct: 824 SRDL 827
>gi|422345812|ref|ZP_16426726.1| DNA mismatch repair protein mutS [Clostridium perfringens
WAL-14572]
gi|373227477|gb|EHP49791.1| DNA mismatch repair protein mutS [Clostridium perfringens
WAL-14572]
Length = 909
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|110799241|ref|YP_695804.1| DNA mismatch repair protein MutS [Clostridium perfringens ATCC
13124]
gi|123049875|sp|Q0TRD6.1|MUTS_CLOP1 RecName: Full=DNA mismatch repair protein MutS
gi|110673888|gb|ABG82875.1| DNA mismatch repair protein MutS [Clostridium perfringens ATCC
13124]
Length = 910
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|307206242|gb|EFN84313.1| Probable DNA mismatch repair protein Msh6 [Harpegnathos saltator]
Length = 1135
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 144/331 (43%), Gaps = 24/331 (7%)
Query: 539 EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTK 598
E Q+K++ P + + ++ G + + T + E L R A + +L R + ++
Sbjct: 771 ETQVKKVGPGYELQSQRKGFKRYYTAEARELLARQMNAEEHRDKVLKDLNRRIFAQFSEN 830
Query: 599 INILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD-------IEL-DGAN-CLKMNGLS 649
+ A L L + R P + D +E+ DG + C+ +
Sbjct: 831 YDTWHMAVYKLATMDVLISLADYARNGDMCVPEIHDGSDGEIFVEIRDGKHPCITSDNFI 890
Query: 650 PYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 709
P + T D S +LTGPN GGKS+L+R + +++ G VPA +
Sbjct: 891 P-------NDTLLATDDAASFMILTGPNMGGKSTLMRQVGLITIMAQLGSYVPASLCRVT 943
Query: 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 769
D I + + D G+S+F VE+SE +I+ T SLVL+DE+ RGT T GT IA
Sbjct: 944 LVDRIFTRLGANDDILAGQSTFLVELSETATILQHVTPYSLVLLDELGRGTSTYDGTAIA 1003
Query: 770 GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG--------TEYLDGQTVPTWK 821
S+++ L + C + STH H + K M E +K
Sbjct: 1004 ASVVDALTKLKCRTLFSTHYHSLVEDYKTNKEVTLAHMACMVETEEEEEVSQETVTFLYK 1063
Query: 822 LVDGICRESLAFETAKREGVPETIIQRAEDL 852
L +G C +S F A+ GVP I +RA ++
Sbjct: 1064 LSEGACPKSYGFNAARLAGVPSVITKRAHEI 1094
>gi|219850607|ref|YP_002465040.1| DNA mismatch repair protein MutS [Chloroflexus aggregans DSM 9485]
gi|219544866|gb|ACL26604.1| DNA mismatch repair protein MutS [Chloroflexus aggregans DSM 9485]
Length = 968
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 7/199 (3%)
Query: 661 VHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML 716
+ N VD+ + ++TGPN GKS+ LR + +L+ G VPA+ A I D I
Sbjct: 691 IGNDVDLDGDNVQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFT 750
Query: 717 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776
+ + D A G+S+F VEM+E +++ +T RSL+++DE+ RGT T G IA +++E +
Sbjct: 751 RIGAQDDIATGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYI 810
Query: 777 DN---IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
N +GC + +TH H + +L ++ M DG+ V +L G S
Sbjct: 811 HNEPRLGCRTLFATHYHELTALDTELPRVRNFHMAAVERDGRVVFLHELRPGGADRSYGI 870
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P ++I+RA DL
Sbjct: 871 HVAELAGIPASVIRRANDL 889
>gi|104774422|ref|YP_619402.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|122983907|sp|Q1G938.1|MUTS_LACDA RecName: Full=DNA mismatch repair protein MutS
gi|103423503|emb|CAI98405.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 856
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + M S++L+TGPN GKS+ +R + +++ G VPA+SA +P FD +
Sbjct: 587 GSYIPNDLVMDEDTSIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQV 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + +SRSLVL DEI RGT T G +AG+II+
Sbjct: 647 FTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAIIK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKTLFATHYHELTELDETLLHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 767 HVAKLAGLPRVVLREASSM 785
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
Q K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 QIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELT-LTHRSNKSENPIPMAGVPHMAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|448302978|ref|ZP_21492928.1| DNA mismatch repair protein MutS [Natronorubrum sulfidifaciens JCM
14089]
gi|445593985|gb|ELY48152.1| DNA mismatch repair protein MutS [Natronorubrum sulfidifaciens JCM
14089]
Length = 898
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 103/194 (53%), Gaps = 1/194 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
D Q L ++TGPN GKS+ +R + LL G VPA++A + D I + + D
Sbjct: 643 TDDQRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAKAARLTPVDRIFTRVGASDDI 702
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG 783
A G+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E + D +G
Sbjct: 703 AGGRSTFMVEMDELATILREADERSLVLLDEVGRGTSTADGLAIAQAITEHIHDAVGATT 762
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+ +TH H + L ++ A E DG+ V ++ G S E A GVPE
Sbjct: 763 LFATHHHPLTELADDLEAAFTLHFEVEQDDGEVVFHHEIAPGAATGSYGVEVATAAGVPE 822
Query: 844 TIIQRAEDLYIACG 857
T+++R+ +L A
Sbjct: 823 TVVERSRELVSAAA 836
>gi|422874017|ref|ZP_16920502.1| DNA mismatch repair protein MutS [Clostridium perfringens F262]
gi|380305012|gb|EIA17295.1| DNA mismatch repair protein MutS [Clostridium perfringens F262]
Length = 909
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISIVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|227524330|ref|ZP_03954379.1| DNA mismatch repair protein MutS [Lactobacillus hilgardii ATCC
8290]
gi|227088561|gb|EEI23873.1| DNA mismatch repair protein MutS [Lactobacillus hilgardii ATCC
8290]
Length = 863
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 147/303 (48%), Gaps = 23/303 (7%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN-ILVFASMLLVIGK-ALF 616
E FST +++E EA ++K +L + +++ I I A + I F
Sbjct: 484 ERFSTPELKEKEALILEAQEQSKTLEYKLFVRIRDDIKKSIKRIQALADAVASIDVLQSF 543
Query: 617 AHVSEGRRRKWVFPALKDIE----LDGANCL--KMNGLSPYWFDAAEGSAVHNTVDM--- 667
A+VSE R ++ P L + +DG + + K+ G Y V N VDM
Sbjct: 544 ANVSEEYR--FIRPTLTNDHRVKVIDGRHPVVEKVLGHQQY---------VPNNVDMGED 592
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
S+ L+TGPN GKS+ +R + ++ G VPA+ A++P FD I + + D G
Sbjct: 593 TSVLLITGPNMSGKSTYMRQMALCVIMNQMGCFVPAKKATLPVFDKIFTRIGAADDLISG 652
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E + T SL+L DEI RGT T G +A +IIE + +NIG + S
Sbjct: 653 QSTFMVEMKEANDAIENATPNSLILFDEIGRGTATYDGMALAQAIIEYVHNNIGAKTLFS 712
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + SL +K +G +G+ V K+ G +S AK G+P ++
Sbjct: 713 THYHELTSLDESLKQLQNVHVGATESNGELVFLHKIQPGPADKSYGIHVAKLAGLPNGLL 772
Query: 847 QRA 849
+RA
Sbjct: 773 KRA 775
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 48 MLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR--PESIPKAGCPV 102
M+Q+ K ++P L R+GDFYE DA + L R +P G P
Sbjct: 2 MVQYQKIKDQYPDAFLFYRLGDFYELFNDDAIKGSQLLELTLTNRSRNAENPVPMCGVPH 61
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
+ +D L GY V I E+++ P + R + PG+ G
Sbjct: 62 KAAQNYIDILVDQGYKVAICEQMEDPRLTKGMVKRAVIQLVTPGTQVDVG 111
>gi|78780122|ref|YP_398234.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT
9312]
gi|123553657|sp|Q317Z7.1|MUTS_PROM9 RecName: Full=DNA mismatch repair protein MutS
gi|78713621|gb|ABB50798.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT
9312]
Length = 913
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 97/186 (52%), Gaps = 1/186 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q L +LTGPN GKS +R I +L G +PA A I D I + + D +
Sbjct: 711 DNQKLIILTGPNASGKSCFIRQIGLIQILAQIGSFIPANKAEIKIADRIFTRIGAVDDQS 770
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEMSE SI+ TS SLVL+DEI RGT T G IA S+ E L I C I
Sbjct: 771 SGQSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIKCNTI 830
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L KN + E + Q + + K+ G +S E AK GVP
Sbjct: 831 FATHYHELNYLKNSNKNIENFQVLVEQNNDQIIFSHKIKKGGSNKSYGIEAAKLAGVPRE 890
Query: 845 IIQRAE 850
+I++A+
Sbjct: 891 VIEKAK 896
>gi|307705747|ref|ZP_07642592.1| DNA mismatch repair protein MutS [Streptococcus mitis SK597]
gi|307620665|gb|EFN99756.1| DNA mismatch repair protein MutS [Streptococcus mitis SK597]
Length = 844
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAKDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|168207459|ref|ZP_02633464.1| DNA mismatch repair protein MutS [Clostridium perfringens E str.
JGS1987]
gi|170661161|gb|EDT13844.1| DNA mismatch repair protein MutS [Clostridium perfringens E str.
JGS1987]
Length = 909
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|418036222|ref|ZP_12674652.1| hypothetical protein LDBUL1519_01352 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354688571|gb|EHE88608.1| hypothetical protein LDBUL1519_01352 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 856
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + M S++L+TGPN GKS+ +R + +++ G VPA+SA +P FD +
Sbjct: 587 GSYIPNDLVMDEDTSIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQV 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + +SRSLVL DEI RGT T G +AG+II+
Sbjct: 647 FTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAIIK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKTLFATHYHELTELDETLLHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 767 HVAKLAGLPRVVLREASSM 785
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
Q K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 QIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELT-LTHRSNKSENPIPMAGVPHMAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|448319418|ref|ZP_21508915.1| DNA mismatch repair protein MutS [Natronococcus amylolyticus DSM
10524]
gi|445607671|gb|ELY61548.1| DNA mismatch repair protein MutS [Natronococcus amylolyticus DSM
10524]
Length = 886
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 124/271 (45%), Gaps = 10/271 (3%)
Query: 586 ELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKM 645
EL L ++ T+ +L L AL + + +WV PAL + G
Sbjct: 530 ELFEELREDVATRAELLQDVGRALATVDALASLATHAAENRWVNPALHE----GDRLEIE 585
Query: 646 NGLSPYWFDAAEGSAVHNTV---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP 702
G P E V N V D + ++TGPN GKS+ +R + A LL G VP
Sbjct: 586 QGRHPVVEQTTE--FVPNDVRLDDDRGFLVVTGPNMSGKSTYMRQVAAIGLLAQIGSFVP 643
Query: 703 AESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTET 762
A+SA I D I + + D A G+S+F VEMSE+ +I+ T SLV++DE+ RGT T
Sbjct: 644 AKSAEIGLVDGIFTRVGALDELAQGRSTFMVEMSELSNILHTATEESLVVLDEVGRGTAT 703
Query: 763 AKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWK 821
G IA + E L N + + +TH H + L ++ A + + DG
Sbjct: 704 YDGISIAWAATEYLHNEVRAKTLFATHYHELTGLADRLPRVANVHIAADERDGDVTFLRT 763
Query: 822 LVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ DG S A GVPE ++ R+ D+
Sbjct: 764 VRDGPTDRSYGIHVADLAGVPEPVVDRSRDV 794
>gi|352518374|ref|YP_004887691.1| DNA mismatch repair protein MutS [Tetragenococcus halophilus NBRC
12172]
gi|348602481|dbj|BAK95527.1| DNA mismatch repair protein MutS [Tetragenococcus halophilus NBRC
12172]
Length = 862
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 152/304 (50%), Gaps = 23/304 (7%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E ++ EA K+ EL + +++ I+ L + + ++ L F
Sbjct: 493 ERFITPELKELEKQILEAEEKSVDLEYELFLDVRKKVKQAIDRLQYLAKMISTTDVLQSF 552
Query: 617 AHVSEGRRRKWVFPALKDIE----LDGANCL--KMNGLSPYWFDAAEGSAVHNTVDMQS- 669
A +SE R ++V P L D + ++G + + K+ G Y + N++ M
Sbjct: 553 AVISE--RYQYVRPELSDDKTLDIVEGRHPVVEKVLGAQEY---------IPNSIQMDQE 601
Query: 670 --LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L+TGPN GKS+ +R + +L G VPA+SA +P FD I + + D G
Sbjct: 602 TLILLITGPNMSGKSTYMRQLALTVILAQMGCFVPAQSAVMPIFDRIFTRIGASDDLIAG 661
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E ++ T+ SLVL DE+ RGT T G +A +IIE + ++G + S
Sbjct: 662 QSTFMVEMMEANQALSHATANSLVLFDELGRGTATYDGMALAQAIIEYIHQHVGAKTLFS 721
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L ++ +G DG V K++DG +S AK G+PE ++
Sbjct: 722 THYHELTVLQDELTQLKNIHVGAVEKDGDLVFLHKMMDGPADKSYGIHVAKIAGLPEELL 781
Query: 847 QRAE 850
RA+
Sbjct: 782 DRAD 785
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR--PESIPKAGCPVVN 104
+ L K ++ L R+GDFYE DA + + L + + IP G P
Sbjct: 13 QYLSIKEQYRDAFLFYRLGDFYELFFDDALKVAQLLELTLTSRNKNAEDPIPMCGVPYHA 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L GY V I E+V+ P + R + PG+
Sbjct: 73 ATNYIDILVEQGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|168211840|ref|ZP_02637465.1| DNA mismatch repair protein MutS [Clostridium perfringens B str.
ATCC 3626]
gi|170710211|gb|EDT22393.1| DNA mismatch repair protein MutS [Clostridium perfringens B str.
ATCC 3626]
Length = 895
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISIVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|374708568|ref|ZP_09713002.1| DNA mismatch repair protein MutS [Sporolactobacillus inulinus CASD]
Length = 877
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 4/197 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
G+ V N + M L ++TGPN GGKS+ +R +++ G VPA+ A +P FD I
Sbjct: 585 GTFVANDIKMDETCDLLMITGPNMGGKSTYMRQAALTAIMAQVGCFVPADHAELPIFDQI 644
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEM E ++ T SL+L+DEI RGT T G IA +I+E
Sbjct: 645 FTRIGAADDLVSGQSTFMVEMDEANYALSHATQNSLILLDEIGRGTSTYDGIAIAQAIVE 704
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ D+I STH H + L K+ +G +G V K+++G +S
Sbjct: 705 FIHDHIAAKTFFSTHYHELTFLEEKLDRLKNIHVGAMEENGTVVFLHKVLEGQADKSYGI 764
Query: 834 ETAKREGVPETIIQRAE 850
AK G+P+ +I+RA+
Sbjct: 765 HVAKLAGLPDVLIERAD 781
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE DA +E A + GG + E IP G P
Sbjct: 9 QYLAIKAQYQDAFLFFRLGDFYELFFDDAKKASKELEIALTSRNGG-KDEYIPMCGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q + L GY + I E+++ P A+ R + PG+
Sbjct: 68 AAKQYIKVLIDKGYKIAICEQMEDPKLAKGMVHREVIQMITPGT 111
>gi|227903306|ref|ZP_04021111.1| DNA mismatch repair protein [Lactobacillus acidophilus ATCC 4796]
gi|227868935|gb|EEJ76356.1| DNA mismatch repair protein [Lactobacillus acidophilus ATCC 4796]
Length = 851
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N+V+M S ++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 575 GSYIPNSVEMDSSTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 634
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T +AG+I++
Sbjct: 635 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDCMALAGAIVK 694
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G +TH H + L + + +G +G+ + K++ G +S
Sbjct: 695 YLHDKVGAKAFFATHYHELTDLDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 754
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P+++++ A L
Sbjct: 755 HVAQLAGLPKSVLREATKL 773
>gi|251796615|ref|YP_003011346.1| DNA mismatch repair protein MutS [Paenibacillus sp. JDR-2]
gi|247544241|gb|ACT01260.1| DNA mismatch repair protein MutS [Paenibacillus sp. JDR-2]
Length = 900
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 10/231 (4%)
Query: 625 RKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV-----DMQSLFLLTGPNGG 679
R++V P + D N + G P +G N + QS+ L+TGPN
Sbjct: 560 RRFVRPVITD----QYNLVIEEGRHPVVEAVMDGVPFINNATSLRQEEQSMLLITGPNMA 615
Query: 680 GKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739
GKS+ +R + ++ G VPA++A IP D I + + D G+S+F VEM +I+
Sbjct: 616 GKSTYMRQVALICIMAQIGCFVPAKTAEIPMIDRIFTRIGAADDLIGGQSTFMVEMKDIQ 675
Query: 740 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLK 798
+ T+ SLV+IDE+ RGT T++G IA ++IE + +IGC +VSTH H + L
Sbjct: 676 LMTEKATASSLVIIDELGRGTSTSEGMSIAQAVIEFVHHHIGCKALVSTHFHELSHLEAS 735
Query: 799 IKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ A M + KL+ G S A+ G+P +II RA
Sbjct: 736 LPKLANACMAVQESGDHVTFLRKLIPGAASTSYGIYCARLAGLPNSIIDRA 786
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K + L R+GDFYE I+A +E GG+ E IP G P
Sbjct: 10 QYLAIKEQAKDAFLFFRLGDFYEMFFDDAINASRELEITLTGREGGM-SEKIPMCGVPYH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L G+ V + E+V+ P+ A+ R I PG+
Sbjct: 69 SAENYIARLVEKGFKVAVCEQVEDPSAAKGVVRREIVRVITPGT 112
>gi|148379759|ref|YP_001254300.1| DNA mismatch repair protein MutS [Clostridium botulinum A str. ATCC
3502]
gi|153930881|ref|YP_001384057.1| DNA mismatch repair protein MutS [Clostridium botulinum A str. ATCC
19397]
gi|189030760|sp|A7FUL0.1|MUTS_CLOB1 RecName: Full=DNA mismatch repair protein MutS
gi|229486458|sp|A5I2S2.1|MUTS_CLOBH RecName: Full=DNA mismatch repair protein MutS
gi|148289243|emb|CAL83339.1| DNA mismatch repair protein [Clostridium botulinum A str. ATCC
3502]
gi|152926925|gb|ABS32425.1| DNA mismatch repair protein MutS [Clostridium botulinum A str. ATCC
19397]
Length = 932
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIKGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|295425864|ref|ZP_06818544.1| DNA mismatch repair protein MutS [Lactobacillus amylolyticus DSM
11664]
gi|295064467|gb|EFG55395.1| DNA mismatch repair protein MutS [Lactobacillus amylolyticus DSM
11664]
Length = 865
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M ++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 588 GSYIPNDVKMADDTDIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 647
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 648 FTRIGAADDLISGKSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 707
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 708 YLHDKVGAKTLFATHYHELTDLDKTLHHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 767
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 768 HVAQLAGLPHRVLREATKL 786
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLRQ 107
K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 16 IKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVDS 74
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 75 YVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 114
>gi|347534571|ref|YP_004841241.1| DNA mismatch repair protein mutS [Lactobacillus sanfranciscensis
TMW 1.1304]
gi|345504627|gb|AEN99309.1| DNA mismatch repair protein mutS [Lactobacillus sanfranciscensis
TMW 1.1304]
Length = 873
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 147/302 (48%), Gaps = 19/302 (6%)
Query: 559 EWFST--LKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKI-NILVFASMLLVIGK-A 614
E FST LK +E+L EA K+++ E+ + +++ +I + AS + I
Sbjct: 490 ERFSTPELKAKESL--ILEAQEKSRSLEYEIFAKIREQIKQQIPRVQKLASGISSIDVLQ 547
Query: 615 LFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDMQS--- 669
FA +SE R ++V P +L LK+ + GS V N V M +
Sbjct: 548 SFATISE--REQFVKPKFNHDKL-----LKLINARHPVVEQVMGSQKYVPNDVLMDAKTK 600
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + +L G VPAESA +P FD I + + D GKS
Sbjct: 601 ILLITGPNMSGKSTYMRQLALIVILAQMGCFVPAESAVMPIFDQIFTRIGAADDLISGKS 660
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E + T SL+L DE+ RGT T G +A +IIE + D + + STH
Sbjct: 661 TFMVEMKEANQAIQNATENSLILFDELGRGTSTYDGVALAQAIIEYIHDKVHAKTMFSTH 720
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L ++K +G DG V K++DG +S A+ G+P ++ R
Sbjct: 721 YHELTGLSDELKQLKNVHVGASEKDGHLVFLHKVLDGAADKSYGINVAQLAGLPTDLLAR 780
Query: 849 AE 850
A+
Sbjct: 781 AQ 782
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 40 KEGTLNWEMLQ-FKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESI 95
K+ T E Q K ++P L R+GDFYE DA L+E L I
Sbjct: 3 KKNTAMMEQYQKIKDQYPDAFLFYRIGDFYELFNEDAVKGAQLLELT-LTARNHKAENPI 61
Query: 96 PKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
P G P + +D L GY V I E+V+ P A+ R + PG+
Sbjct: 62 PMCGVPHKAAQGYIDTLVDQGYKVAICEQVEDPKLAQGMVKREVIQLVTPGT 113
>gi|241894950|ref|ZP_04782246.1| DNA mismatch repair protein [Weissella paramesenteroides ATCC
33313]
gi|241871668|gb|EER75419.1| DNA mismatch repair protein [Weissella paramesenteroides ATCC
33313]
Length = 878
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 117/234 (50%), Gaps = 6/234 (2%)
Query: 659 SAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N VDMQ ++ L+TGPN GKS+ +R + ++ G VPA A++P FD I
Sbjct: 589 SYVANDVDMQQDDTILLITGPNMSGKSTYMRQLALIVVMAQIGSFVPASEATLPIFDQIF 648
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G S+F VEMSE + + T SL+L DE+ RGT T G +A +IIE
Sbjct: 649 TRIGAADDLISGNSTFMVEMSEANTALQNATKHSLILFDELGRGTATYDGMALAQAIIEY 708
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ + + STH H + +L ++ +G G+ + + K++ G +S
Sbjct: 709 VHQHTQAKTLFSTHYHELTALADELTALRNVHVGATEEHGELIFSHKVLPGPADQSYGIN 768
Query: 835 TAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKK 888
AK G+PET+I+RA I + ++ R P P A M+ D+K
Sbjct: 769 VAKLAGLPETLIKRAAK--ILANLESQDVSLRTAPMPVTQLADTATAMVTDDEK 820
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K+++P L R+GDFYE DA + ++E L + IP AG P +
Sbjct: 15 EIKAQYPDAFLFYRLGDFYELFNEDAIVGSQILELT-LTQRNKNSAQPIPMAGVPHHAAQ 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L GY V +VE+++ P A R + PG+
Sbjct: 74 NYIDILVDKGYKVAVVEQMENPADAEGMVKREVVQLVTPGT 114
>gi|168214981|ref|ZP_02640606.1| DNA mismatch repair protein MutS [Clostridium perfringens CPE str.
F4969]
gi|170713592|gb|EDT25774.1| DNA mismatch repair protein MutS [Clostridium perfringens CPE str.
F4969]
Length = 909
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVSIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|387592825|gb|EIJ87849.1| hypothetical protein NEQG_01921 [Nematocida parisii ERTm3]
Length = 907
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 658 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
+ + N +D+ L +LTGPN GKS+ LR++ A +L G VPA S P +D I
Sbjct: 702 NTHIPNDIDIFPENKLIVLTGPNMAGKSTFLRNVSTAIVLRQIGAKVPASFFSGPIYDRI 761
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D+ +G+S+FQ+EM E +I+T T S V+IDE+ RGT T +G+ I+ ++ E
Sbjct: 762 FTRIGANDNLLEGESTFQIEMKETANILTNATENSFVIIDELGRGTSTKEGSAISMAVKE 821
Query: 775 TLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
L I C + +TH YK + + + V +KLVDGIC +S +
Sbjct: 822 YLKKIKCTTLYATHFFSAIVEGDITMKMNYKHITNSEEEQEIVYLYKLVDGICSDSCGID 881
Query: 835 TAKREGVPETIIQRA 849
K VP+ +I RA
Sbjct: 882 ICKMTKVPKEVINRA 896
>gi|168218088|ref|ZP_02643713.1| DNA mismatch repair protein MutS [Clostridium perfringens NCTC
8239]
gi|182379897|gb|EDT77376.1| DNA mismatch repair protein MutS [Clostridium perfringens NCTC
8239]
Length = 910
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|357511353|ref|XP_003625965.1| DNA mismatch repair protein Msh6-1 [Medicago truncatula]
gi|355500980|gb|AES82183.1| DNA mismatch repair protein Msh6-1 [Medicago truncatula]
Length = 1312
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 107/192 (55%), Gaps = 8/192 (4%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D S LLTGPN GGKS+LLR +C A +L G VP+ES + D I + M + D+
Sbjct: 1055 DQASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPSESFELSPVDRIFVRMGARDNIM 1114
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F E+SE +++++ T SLV +DE+ RGT T+ G IA S++E L ++ C G+
Sbjct: 1115 AGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVRSVQCRGL 1174
Query: 785 VSTHLHGIFSLPLKIKNAAYKAM------GTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
STH H + LK M G E LD T ++L G C +S A+
Sbjct: 1175 FSTHYHRLAIDYLKDPKVCLAHMACQVGSGNEGLDEVTF-LYRLSAGACPKSYGVNVARL 1233
Query: 839 EGVPETIIQRAE 850
G+P +++Q+A+
Sbjct: 1234 AGLPTSVLQKAD 1245
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 97
+L G W +FKSK +VL ++G FYE +DA + + L G +P
Sbjct: 335 NLSGGQKQW--WEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELELQYMRGEQPH---- 388
Query: 98 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P N ++ L R GY V +VE+ + P Q R+
Sbjct: 389 CGFPEKNFTVNVERLARKGYRVLVVEQTETPEQMELRR 426
>gi|169342625|ref|ZP_02863669.1| DNA mismatch repair protein MutS [Clostridium perfringens C str.
JGS1495]
gi|169299267|gb|EDS81336.1| DNA mismatch repair protein MutS [Clostridium perfringens C str.
JGS1495]
Length = 909
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + +L+ G VPA A+I D I + + D A
Sbjct: 606 DDNQLLIITGPNMSGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLA 665
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
GKS+F VEM E+ +I+ T SLVL+DE+ RGT T G IA S+IE + N+ C
Sbjct: 666 GGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCK 725
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L +I ++ + +D + K+++G +S E AK G+P
Sbjct: 726 TLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIP 785
Query: 843 ETIIQRAEDL 852
+ +I RA+++
Sbjct: 786 DEVINRAKEI 795
>gi|357153628|ref|XP_003576514.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Brachypodium
distachyon]
Length = 1318
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 12/205 (5%)
Query: 656 AEGSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
+GS V N + M S +LTGPN GGKS+LLR +C +L G VPAE+
Sbjct: 1044 GKGSFVPNDIKMGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAENFEFSL 1103
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
D I + M + D G+S+F VE+ E S++++ T SLV +DE+ RGT T+ G IA
Sbjct: 1104 VDRIFVRMGARDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAA 1163
Query: 771 SIIETL-DNIGCLGIVSTHLHGIFSLPLKIK-----NAAYKAMGTEYLDGQTVPTWKLVD 824
S++E L ++ CLG+ STH H + IK A MG L+ T ++L
Sbjct: 1164 SVLEYLVHHVQCLGLFSTHYHRLAVEQQDIKVSLCHMACEVGMGEGGLEEVTF-LYRLTA 1222
Query: 825 GICRESLAFETAKREGVPETIIQRA 849
G C +S A+ G+P +++QRA
Sbjct: 1223 GSCPKSYGVNVARLAGIPASVLQRA 1247
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 37 GSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIP 96
+L G W +FKS+ +VL ++G FYE +DA + L G +P
Sbjct: 366 ANLTGGQRQW--WEFKSQHMDKVLFFKMGKFYELYEMDAHVGARELDLQYMKGDQPH--- 420
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P NL L+ L + GY V +VE+ + P Q R+
Sbjct: 421 -CGFPEKNLSVNLEKLAQKGYRVLVVEQTETPNQLELRR 458
>gi|297205602|ref|ZP_06922998.1| DNA mismatch repair protein MutS [Lactobacillus jensenii JV-V16]
gi|297150180|gb|EFH30477.1| DNA mismatch repair protein MutS [Lactobacillus jensenii JV-V16]
Length = 860
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 4/201 (1%)
Query: 656 AEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
A+GS + N + M S+FL+TGPN GKS+ +R + +++ G VPA A++P FD
Sbjct: 584 ADGSYIPNDIQMADDTSVFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEAALPIFD 643
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
I + + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I
Sbjct: 644 QIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAI 703
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
++ L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 704 VKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQENGKLIFLHKILPGPADQSY 763
Query: 832 AFETAKREGVPETIIQRAEDL 852
A+ G+P +++ A +
Sbjct: 764 GIHVAQLAGLPNKVLREASKM 784
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLRQT 108
KS++P L RVGDFYE DA ++E L IP AG P +
Sbjct: 15 KSQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKSENPIPMAGVPHQAVDSY 73
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P QA+ R I PG+
Sbjct: 74 VNTLVEKGYKVALCEQLEDPKQAKGMVKRGIIQLVTPGT 112
>gi|385816195|ref|YP_005852586.1| DNA mismatch repair protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|325126232|gb|ADY85562.1| DNA mismatch repair protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 856
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I + + D GK
Sbjct: 601 SIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQIFTRIGAADDLYSGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + +SRSLVL DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L + + +G +G+ + K++ G +S AK G+P +++
Sbjct: 721 HYHELTELDETLLHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAKLAGLPRAVLR 780
Query: 848 RAEDL 852
A +
Sbjct: 781 EASSM 785
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
Q K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 QIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELT-LTHRSNKSENPIPMAGVPHMAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>gi|450088206|ref|ZP_21854685.1| DNA mismatch repair protein MutS [Streptococcus mutans NV1996]
gi|449216755|gb|EMC16847.1| DNA mismatch repair protein MutS [Streptococcus mutans NV1996]
Length = 849
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ N + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTNLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|417933705|ref|ZP_12577025.1| DNA mismatch repair protein MutS [Streptococcus mitis bv. 2 str.
F0392]
gi|340770275|gb|EGR92790.1| DNA mismatch repair protein MutS [Streptococcus mitis bv. 2 str.
F0392]
Length = 844
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMTEDISIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|307710199|ref|ZP_07646643.1| DNA mismatch repair protein MutS [Streptococcus mitis SK564]
gi|307619179|gb|EFN98311.1| DNA mismatch repair protein MutS [Streptococcus mitis SK564]
Length = 844
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQMGSYVPAESARLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLASSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|419778317|ref|ZP_14304210.1| DNA mismatch repair protein MutS [Streptococcus oralis SK10]
gi|383187332|gb|EIC79785.1| DNA mismatch repair protein MutS [Streptococcus oralis SK10]
Length = 844
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+PE ++ RA+ +
Sbjct: 767 AGLPEELLARADKI 780
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|419467737|ref|ZP_14007615.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA05248]
gi|419513461|ref|ZP_14053091.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA05578]
gi|419517665|ref|ZP_14057277.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA02506]
gi|421284213|ref|ZP_15734995.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04216]
gi|379542159|gb|EHZ07317.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA05248]
gi|379632748|gb|EHZ97318.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA05578]
gi|379637315|gb|EIA01871.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA02506]
gi|395879227|gb|EJG90287.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04216]
Length = 844
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|161170281|gb|ABX59251.1| mismatch repair ATPase MutS family [uncultured marine bacterium
EB000_55B11]
gi|297183809|gb|ADI19932.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
Length = 870
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 146/311 (46%), Gaps = 30/311 (9%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL----- 615
F+T+++ E + AG KA + LE+ QTK+ I+ F+ +L KAL
Sbjct: 503 FTTIELSEIETKILNAGGKALSLELEIFD------QTKLKIIEFSERILNAAKALAEIDL 556
Query: 616 -FAHVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSA----VHNTVDMQS 669
A W P +LD + K+ G P A + SA + N D+ +
Sbjct: 557 TIALADIAMSENWCRP-----KLDKSRKFKITAGRHPVVEAALQKSASGVFIANNCDLSA 611
Query: 670 -------LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
++LLTGPN GKS+ LR +L+ G VPAESA I + + + D
Sbjct: 612 GQNGDKPIWLLTGPNMAGKSTFLRQNAIIALMAQIGSFVPAESAEIGXITQLFSRVGASD 671
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GC 781
A G+S+F VEM E +I+ +LV++DEI RGT T G IA + +E L NI C
Sbjct: 672 DLARGRSTFMVEMVETAAILNQAGENALVILDEIGRGTATYDGLSIAWATLENLHNINNC 731
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + SL ++ + + G + ++ G S + AK G+
Sbjct: 732 RALFATHYHELTSLTENLEGLMNATVSVKEWKGDIIFLHEVKKGAADRSYGVQVAKLAGI 791
Query: 842 PETIIQRAEDL 852
P+T+I+RA ++
Sbjct: 792 PQTVIRRATEV 802
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++P +L R+GDFYE DA L G IP G P +
Sbjct: 4 QFLEIKSEYPNALLFYRMGDFYELFFDDAVAAAAALDISLTKRGKHLGNDIPMCGVPHHS 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L R G+ V + E+++ P +A++R S+ +
Sbjct: 64 AENYLLTLIRKGFRVAVCEQLETPAEAKARGSKSV 98
>gi|170755080|ref|YP_001781348.1| DNA mismatch repair protein MutS [Clostridium botulinum B1 str.
Okra]
gi|189030762|sp|B1IM68.1|MUTS_CLOBK RecName: Full=DNA mismatch repair protein MutS
gi|169120292|gb|ACA44128.1| DNA mismatch repair protein MutS [Clostridium botulinum B1 str.
Okra]
Length = 932
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|374674289|dbj|BAL52180.1| mismatch repair protein MutS [Lactococcus lactis subsp. lactis
IO-1]
Length = 840
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F + ++ E E EA K+ + +L GL +E + I L + + L +
Sbjct: 484 ERFGSQELTEIEEIMLEAREKSSSLEYDLFMGLRTETEQYIGRLQALAKTIAEIDCLQSL 543
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLL 673
++ ++ P L D G+ +++ G +A G+ V N +++ + L+
Sbjct: 544 SVVAEKQGYIRPTLTD----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLI 599
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R ++ G VPAE+A++P FDAI + + D+ G+S+F V
Sbjct: 600 TGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLPIFDAIFTRIGASDNLISGESTFMV 659
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EMSE + +SRSL++ DE+ RGT T G +A +IIE + D+IG + +TH H +
Sbjct: 660 EMSEANHAIQKASSRSLIIFDELGRGTATYDGMALAQAIIEYVHDHIGAKTLFATHYHEL 719
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
L + + + T +G K+ +G +S AK G+P+ +++RA+
Sbjct: 720 TDLDEALDHLDNVHVATLEQNGNVTFLHKITEGPADKSYGIHVAKIAGLPQPLLERAD 777
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AAAEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|418113400|ref|ZP_12750396.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41538]
gi|353781611|gb|EHD62052.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41538]
Length = 844
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|111073623|emb|CAL29486.1| DNA mismatch repair protein, MutS [Wolbachia endosymbiont of
Onchocerca volvulus]
Length = 812
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 109/198 (55%), Gaps = 1/198 (0%)
Query: 657 EGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML 716
+G + N++++ + L+TGPN GKS+ LR ++L G VPA+SA I D I
Sbjct: 610 DGKFIANSINLVGMHLITGPNMAGKSTFLRQNALIAILAHMGSFVPADSAHIGVVDKIFS 669
Query: 717 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776
+ + D+ G S+F +EM E +IV T RSLV++DEI RGT G IA ++IE +
Sbjct: 670 RVGATDNVTAGYSTFMIEMLETATIVNQATERSLVILDEIGRGTGVYDGLSIAQAVIEHI 729
Query: 777 DNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
++ C I +TH H + + +KN + + +G+ V ++V+GI ES
Sbjct: 730 HDVNKCRAIFATHYHELTKVGKYLKNIKCFCVKVKEWNGKVVFLHEVVEGIADESYGIYV 789
Query: 836 AKREGVPETIIQRAEDLY 853
A+ G P++++ RA ++
Sbjct: 790 ARLAGFPDSVLDRASAVF 807
>gi|322377998|ref|ZP_08052485.1| DNA mismatch repair protein MutS [Streptococcus sp. M334]
gi|321280980|gb|EFX57993.1| DNA mismatch repair protein MutS [Streptococcus sp. M334]
Length = 844
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|290999909|ref|XP_002682522.1| DNA mismatch repair protein msh6 [Naegleria gruberi]
gi|284096149|gb|EFC49778.1| DNA mismatch repair protein msh6 [Naegleria gruberi]
Length = 1998
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 7/191 (3%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + L+TGPN GGKS++LRS C A ++ G VPAE+ + D I + + D
Sbjct: 1729 DDATTLLVTGPNMGGKSTILRSSCIAVIMAQIGCFVPAEACELTLIDRIFTRIGANDRIL 1788
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VE+ E +IV TSRSLV++DE+ RGT T G IA S+ + + D +GCL +
Sbjct: 1789 AGESTFMVELLETSNIVRNATSRSLVILDELGRGTSTHDGYAIANSVAQYMADVVGCLCM 1848
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQT------VPTWKLVDGICRESLAFETAKR 838
STH + + + + M E +T + ++ G+C +S + AK+
Sbjct: 1849 FSTHYYELTEELKHHPSIDFYQMECEVEKDETGRITDVIFLYQFARGVCEKSYGIQVAKK 1908
Query: 839 EGVPETIIQRA 849
GVP++I+ RA
Sbjct: 1909 AGVPQSIVDRA 1919
>gi|168180373|ref|ZP_02615037.1| DNA mismatch repair protein MutS [Clostridium botulinum NCTC 2916]
gi|226949041|ref|YP_002804132.1| DNA mismatch repair protein MutS [Clostridium botulinum A2 str.
Kyoto]
gi|254766622|sp|C1FNT9.1|MUTS_CLOBJ RecName: Full=DNA mismatch repair protein MutS
gi|182668882|gb|EDT80860.1| DNA mismatch repair protein MutS [Clostridium botulinum NCTC 2916]
gi|226844101|gb|ACO86767.1| DNA mismatch repair protein MutS [Clostridium botulinum A2 str.
Kyoto]
Length = 932
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|448663880|ref|ZP_21683866.1| DNA mismatch repair protein MutS [Haloarcula amylolytica JCM 13557]
gi|445775196|gb|EMA26208.1| DNA mismatch repair protein MutS [Haloarcula amylolytica JCM 13557]
Length = 922
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 101/184 (54%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 652 LAVVTGPNMSGKSTYMRQVALICLLAQAGSFVPAKAADLPILDRVFTRVGASDDIAGGRS 711
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T+ SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 712 TFMIEMTELATILDAATADSLVLLDEVGRGTSTADGLAIARAVTEHLHDEVGVYTLFATH 771
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + A + T D +L G S E A GVPE+++ R
Sbjct: 772 HHDLTAVAAALPGATNRHFETSREDDDVRFDHELAPGPAAASYGVEVASMAGVPESVVDR 831
Query: 849 AEDL 852
+ DL
Sbjct: 832 SRDL 835
>gi|168186343|ref|ZP_02620978.1| DNA mismatch repair protein MutS [Clostridium botulinum C str.
Eklund]
gi|169295697|gb|EDS77830.1| DNA mismatch repair protein MutS [Clostridium botulinum C str.
Eklund]
Length = 908
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +LL G VPA+ I D I + + D A G
Sbjct: 607 HQLLLITGPNMAGKSTYMRQVALITLLSQIGSFVPAKEVEIVICDKIFTRIGASDDLARG 666
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA ++IE + +N+ +
Sbjct: 667 KSTFMVEMWEVANILNNATNKSLILLDEVGRGTSTYDGLSIAWAVIEYICKNNNLKSKTL 726
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + SL KI+ ++ + +D + K+++G ES E AK GVP
Sbjct: 727 FATHYHELTSLEGKIRGVKNYSISVKKVDDDIIFLRKIIEGGADESYGIEVAKLAGVPSV 786
Query: 845 IIQRAEDL 852
+ RA+++
Sbjct: 787 VTDRAKEI 794
>gi|157130502|ref|XP_001661901.1| DNA mismatch repair protein muts [Aedes aegypti]
gi|108871885|gb|EAT36110.1| AAEL011780-PA [Aedes aegypti]
Length = 1130
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 107/193 (55%), Gaps = 12/193 (6%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L LLTGPN GGKS+++R + +++ G +PAES + D I + + D G S
Sbjct: 902 LVLLTGPNIGGKSTMMRQVGILAVMAQIGSRIPAESCRMTLIDRIFTRLGANDDIMAGHS 961
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789
+F VE++E +I+ T +SLVL+DE+ RGT T GT IAG+++ L ++ C + STH
Sbjct: 962 TFLVELNETSTILKHATRKSLVLLDELGRGTATYDGTSIAGAVVNFLADLKCRSMFSTHY 1021
Query: 790 HGI---FSLPLKIKNAAYKAMGTEYLDGQTVPT-------WKLVDGICRESLAFETAKRE 839
H + FS +++ + A E D + PT +K DG C +S F AK
Sbjct: 1022 HNLVDNFSTDSRVR-LGHMACMVENEDDED-PTQETVTFLYKYADGACPKSYGFNAAKLA 1079
Query: 840 GVPETIIQRAEDL 852
G+P II+RA +L
Sbjct: 1080 GMPACIIKRAHEL 1092
>gi|293364382|ref|ZP_06611108.1| DNA mismatch repair protein HexA [Streptococcus oralis ATCC 35037]
gi|307702653|ref|ZP_07639605.1| DNA mismatch repair protein MutS [Streptococcus oralis ATCC 35037]
gi|291317228|gb|EFE57655.1| DNA mismatch repair protein HexA [Streptococcus oralis ATCC 35037]
gi|307623769|gb|EFO02754.1| DNA mismatch repair protein MutS [Streptococcus oralis ATCC 35037]
Length = 844
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAITAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+PE ++ RA+ +
Sbjct: 767 AGLPEELLARADKI 780
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIDQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|168184856|ref|ZP_02619520.1| DNA mismatch repair protein MutS [Clostridium botulinum Bf]
gi|237795209|ref|YP_002862761.1| DNA mismatch repair protein MutS [Clostridium botulinum Ba4 str.
657]
gi|259511163|sp|C3KX35.1|MUTS_CLOB6 RecName: Full=DNA mismatch repair protein MutS
gi|182672081|gb|EDT84042.1| DNA mismatch repair protein MutS [Clostridium botulinum Bf]
gi|229263070|gb|ACQ54103.1| DNA mismatch repair protein MutS [Clostridium botulinum Ba4 str.
657]
Length = 932
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|421837499|ref|ZP_16271662.1| DNA mismatch repair protein MutS [Clostridium botulinum
CFSAN001627]
gi|409740345|gb|EKN40647.1| DNA mismatch repair protein MutS [Clostridium botulinum
CFSAN001627]
Length = 932
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|418976809|ref|ZP_13524657.1| DNA mismatch repair protein MutS [Streptococcus mitis SK575]
gi|383350889|gb|EID28735.1| DNA mismatch repair protein MutS [Streptococcus mitis SK575]
Length = 844
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQMGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|256852232|ref|ZP_05557618.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 27-2-CHN]
gi|260661736|ref|ZP_05862647.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 115-3-CHN]
gi|256615278|gb|EEU20469.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 27-2-CHN]
gi|260547483|gb|EEX23462.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 115-3-CHN]
Length = 854
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 4/201 (1%)
Query: 656 AEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
A+GS + N + M S+FL+TGPN GKS+ +R + +++ G VPA A++P FD
Sbjct: 578 ADGSYIPNDIQMADDTSVFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEAALPIFD 637
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
I + + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I
Sbjct: 638 QIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAI 697
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
++ L D +G + +TH H + + + + +G +G + K++ G +S
Sbjct: 698 VKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQENGNLIFLHKILPGPADQSY 757
Query: 832 AFETAKREGVPETIIQRAEDL 852
A+ G+P +++ A +
Sbjct: 758 GIHVAQLAGLPNKVLREASKM 778
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLRQT 108
KS++P L RVGDFYE DA ++E L IP AG P +
Sbjct: 9 KSQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKSENPIPMAGVPHQAVDSY 67
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P QA+ R I PG+
Sbjct: 68 VNTLVEKGYKVALCEQLEDPKQAKGMVKRGIIQLVTPGT 106
>gi|251772273|gb|EES52843.1| DNA mismatch repair protein MutS [Leptospirillum ferrodiazotrophum]
Length = 856
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 144/304 (47%), Gaps = 10/304 (3%)
Query: 574 HEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALK 633
EA ++ A+ E+L L E+ + + S + L + GR+ ++ P
Sbjct: 523 REARSRVLAREAEILGELGREVLAQREGIHLLSDFVARVDVLLSFFEIGRKMRYALP--- 579
Query: 634 DIELDGANCLKMNGLSPYW-FDAAEGSAVHNTVDMQS--LFLLTGPNGGGKSSLLRSICA 690
D +G + NG P A + N D+ + +LTGPN GKS+ +R +
Sbjct: 580 DFVPEGEPLVIRNGRHPVLEARMAPEPFMPNDTDLVAGEFIVLTGPNMAGKSTYMRQVAL 639
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
L+ G VPA+ A IP D I+ + + D+ +G S+F VEM E+ I+++ T RSL
Sbjct: 640 IVLMAHAGAPVPADEARIPPTDRIIARVGAQDNILEGASTFMVEMQEVARILSSATPRSL 699
Query: 751 VLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809
VL+DE+ RGT T G IA ++ E + D I + +TH H + L + + + +
Sbjct: 700 VLLDEVGRGTATFDGMAIAWAVSEFIHDRIQSRTLFATHYHELSELARRRERVRNQTVRV 759
Query: 810 EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL---YIACGVNCVMIAAR 866
G+ + ++VDG +S E A+ G+PE ++ RA ++ + V+ R
Sbjct: 760 SIRQGRPLFEHRIVDGRAEQSYGIEVARLAGLPEEVVGRASEILGFWEGGAKKTVLPKER 819
Query: 867 EQPP 870
PP
Sbjct: 820 TLPP 823
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNG 116
+L R+GDF+E G A + G L RP+ +P G P +L L L G
Sbjct: 37 ILFFRLGDFFELFGEQAELASRLLGVTLTSRDKSRPDPLPMCGIPAKSLEMYLPKLIHAG 96
Query: 117 YSVCIVEEV 125
YSV I E+
Sbjct: 97 YSVAIAEQA 105
>gi|281492893|ref|YP_003354873.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
KF147]
gi|281376545|gb|ADA66031.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
KF147]
Length = 840
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F + ++ E E EA K+ + +L GL +E + I L + + L +
Sbjct: 484 ERFGSQELTEIEEIMLEAREKSSSLEYDLFMGLRTETEQYIGRLQALAKTIAEIDCLQSL 543
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLL 673
++ ++ P L D G+ +++ G +A G+ V N +++ + L+
Sbjct: 544 SVVAEKQGYIRPTLTD----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLI 599
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R ++ G VPAE+A++P FDAI + + D+ G+S+F V
Sbjct: 600 TGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLPIFDAIFTRIGASDNLISGESTFMV 659
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EMSE + +SRSL++ DE+ RGT T G +A +IIE + D+IG + +TH H +
Sbjct: 660 EMSEANHAIQKASSRSLIIFDELGRGTATYDGMALAQAIIEYVHDHIGAKTLFATHYHEL 719
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
L + + + T +G K+ +G +S AK G+P+ +++RA+
Sbjct: 720 TDLDEALDHLDNVHVATLEQNGNVTFLHKITEGPADKSYGIHVAKIAGLPQPLLERAD 777
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AAAEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|254525938|ref|ZP_05137990.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT
9202]
gi|221537362|gb|EEE39815.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT
9202]
Length = 913
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 100/186 (53%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q L +LTGPN GKS +R + +L G VPA +A I D I + + D + G
Sbjct: 713 QKLIILTGPNASGKSCFIRQLGLIQILAQIGSFVPANNAEIKIADRIFTRIGAVDDQSSG 772
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVS 786
+S+F VEMSE SI+ TS SLVL+DEI RGT T G IA S+ E L I C I +
Sbjct: 773 QSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKIIQCNTIFA 832
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L KN + E + Q + + ++V G +S E AK GVP+ +I
Sbjct: 833 THYHELNYLKNSNKNIQNFQVLVEQNNDQLIFSHRIVKGGSNKSYGIEAAKLAGVPKEVI 892
Query: 847 QRAEDL 852
++A+ +
Sbjct: 893 EKAKSV 898
>gi|443632627|ref|ZP_21116806.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347450|gb|ELS61508.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 860
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +PE
Sbjct: 713 FSTHYHELTVLEDKLHQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPED 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LISRAQDI 780
Score = 42.7 bits (99), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|387817995|ref|YP_005678340.1| DNA mismatch repair protein MutS [Clostridium botulinum H04402 065]
gi|322806037|emb|CBZ03604.1| DNA mismatch repair protein MutS [Clostridium botulinum H04402 065]
Length = 932
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|239826703|ref|YP_002949327.1| DNA mismatch repair protein MutS [Geobacillus sp. WCH70]
gi|259511169|sp|C5D9H5.1|MUTS_GEOSW RecName: Full=DNA mismatch repair protein MutS
gi|239806996|gb|ACS24061.1| DNA mismatch repair protein MutS [Geobacillus sp. WCH70]
Length = 860
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 7/189 (3%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L L+TGPN GKS+ +R I ++ G VPAE A +P FD + + + D G
Sbjct: 599 RELLLITGPNMSGKSTYMRQIALTVIMAQIGCFVPAEKAVLPIFDQVFTRIGAADDLVSG 658
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R+ + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 659 QSTFMVEMLEARNAIVHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFS 718
Query: 787 THLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
TH H + L K+KN +A+ +G+ V K+ +G +S A+ +P
Sbjct: 719 THYHELTDLEQSLAKLKNVHVRAVEE---NGKVVFLHKIEEGPADQSYGIHVAELAELPA 775
Query: 844 TIIQRAEDL 852
++IQRA+++
Sbjct: 776 SLIQRAKEI 784
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+++P L R+GDFYE DA + L G E +P G P +
Sbjct: 10 QYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGEERVPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AQGYIEQLISKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|429246332|ref|ZP_19209662.1| DNA mismatch repair protein MutS [Clostridium botulinum
CFSAN001628]
gi|428756642|gb|EKX79184.1| DNA mismatch repair protein MutS [Clostridium botulinum
CFSAN001628]
Length = 882
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|51091506|dbj|BAD36244.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group]
gi|51091562|dbj|BAD36299.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group]
Length = 1253
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 12/205 (5%)
Query: 658 GSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
GS V N + M S +LTGPN GGKS+LLR +C +L G VPAES + D
Sbjct: 982 GSFVPNDIKMGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVD 1041
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
+ + M + D G+S+F VE+ E S++++ T SLV +DE+ RGT T+ G IA S+
Sbjct: 1042 RMFVRMGARDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASV 1101
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-----QTVPTWKLVDGI 826
+E L ++ CLG+ STH H + + K + M E G + +KL G
Sbjct: 1102 LEYLVHHVQCLGLFSTHYHRL-AAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGS 1160
Query: 827 CRESLAFETAKREGVPETIIQRAED 851
C +S A+ G+P +++QRA +
Sbjct: 1161 CPKSYGVNVARLAGIPASVLQRANE 1185
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 97
SL G W +FKS+ +VL ++G FYE +DA + + L G +P
Sbjct: 307 SLTGGQRQW--WEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGDKPH---- 360
Query: 98 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P N L+ L + GY V ++E+ + P Q R+
Sbjct: 361 CGFPEKNFELNLEKLAKKGYRVLVIEQTETPEQLDLRR 398
>gi|289167055|ref|YP_003445322.1| DNA mismatch repair protein hexA [Streptococcus mitis B6]
gi|288906620|emb|CBJ21454.1| DNA mismatch repair protein hexA [Streptococcus mitis B6]
Length = 844
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDISIQLITGPNMSGKSTYMRQLAMTAVMAQMGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|125605646|gb|EAZ44682.1| hypothetical protein OsJ_29308 [Oryza sativa Japonica Group]
Length = 1293
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 12/205 (5%)
Query: 658 GSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
GS V N + M S +LTGPN GGKS+LLR +C +L G VPAES + D
Sbjct: 1022 GSFVPNDIKMGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVD 1081
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
+ + M + D G+S+F VE+ E S++++ T SLV +DE+ RGT T+ G IA S+
Sbjct: 1082 RMFVRMGARDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASV 1141
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-----QTVPTWKLVDGI 826
+E L ++ CLG+ STH H + + K + M E G + +KL G
Sbjct: 1142 LEYLVHHVQCLGLFSTHYHRL-AAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGS 1200
Query: 827 CRESLAFETAKREGVPETIIQRAED 851
C +S A+ G+P +++QRA +
Sbjct: 1201 CPKSYGVNVARLAGIPASVLQRANE 1225
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 97
SL G W +FKS+ +VL ++G FYE +DA + + L G +P
Sbjct: 347 SLTGGQRQW--WEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGDKPH---- 400
Query: 98 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P N L+ L + GY V ++E+ + P Q R+
Sbjct: 401 CGFPEKNFELNLEKLAKKGYRVLVIEQTETPEQLDLRR 438
>gi|15674192|ref|NP_268367.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
Il1403]
gi|13878591|sp|Q9CDK9.1|MUTS_LACLA RecName: Full=DNA mismatch repair protein MutS
gi|12725276|gb|AAK06308.1|AE006450_1 mismatch repair protein MutS [Lactococcus lactis subsp. lactis
Il1403]
Length = 840
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F + ++ E E EA K+ + +L GL +E + I L + + L +
Sbjct: 484 ERFGSQELTEIEEIMLEAREKSSSLEYDLFMGLRTETEQYIGRLQALAKTIAEIDCLQSL 543
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLL 673
++ ++ P L D G+ +++ G +A G+ V N +++ + L+
Sbjct: 544 SVVAEKQGYIRPTLTD----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLI 599
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R ++ G VPAE+A++P FDAI + + D+ G+S+F V
Sbjct: 600 TGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLPIFDAIFTRIGASDNLISGESTFMV 659
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EMSE + +SRSL++ DE+ RGT T G +A +IIE + D+IG + +TH H +
Sbjct: 660 EMSEANHAIQKASSRSLIIFDELGRGTATYDGMALAQAIIEYVHDHIGAKTLFATHYHEL 719
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
L + + + T +G K+ +G +S AK G+P+ +++RA+
Sbjct: 720 TDLDEALDHLDNVHVATLEQNGNVTFLHKITEGPADKSYGIHVAKIAGLPQPLLERAD 777
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AAAEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|357015317|ref|ZP_09080316.1| DNA mismatch repair protein [Paenibacillus elgii B69]
Length = 930
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 104/202 (51%), Gaps = 1/202 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++ L+TGPN GKS+ +R + L+ G VPA+ A +P D I + + D G+
Sbjct: 607 NMLLITGPNMAGKSTYMRQVAMICLMAQIGCFVPAKRAKVPVIDRIFTRIGAADDLIGGQ 666
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM +I+ + T RSLV+IDE+ RGT T +G IA ++IE L D IGC +VST
Sbjct: 667 STFMVEMMDIQVMTEKATERSLVIIDELGRGTSTGEGMSIAQAVIEFLHDKIGCKTLVST 726
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L + M + Q +L+ G S A+ G+P +II
Sbjct: 727 HFHELAHLEESLGGLRNYCMAVKESGKQVTFLRRLIRGAASTSYGIYCAQIAGLPASIID 786
Query: 848 RAEDLYIACGVNCVMIAAREQP 869
R+ +L + ++ R QP
Sbjct: 787 RSYELLNSFEARTELLQGRLQP 808
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 27/183 (14%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLRPESIPKAGCPVVN 104
+ L K++ P L R+GDFYE DA + + G G E IP G P +
Sbjct: 10 QYLSVKAEVPDAFLFFRLGDFYEMFFDDAVLAARELEITLTGREGGGEERIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPE 164
+ L GY V I E+V+ P +A+ R I PG+ V + ++
Sbjct: 70 AESYIARLVEKGYKVAICEQVEDPAEAKGVVRREIVRIVTPGT--VMDARSLSETVN--- 124
Query: 165 PMPVIGVSRSAKGY----CIIS---------------ILETMKTYSLEDGLTEDALVTKL 205
++ V S GY C IS +L+ + TYS + L +A++ ++
Sbjct: 125 -NYIVAVVYSGGGYGFAACDISTGELYVTRFSGSFELLLDELNTYSPSELLGSEAVLEQI 183
Query: 206 RTS 208
R S
Sbjct: 184 RGS 186
>gi|153940053|ref|YP_001391055.1| DNA mismatch repair protein MutS [Clostridium botulinum F str.
Langeland]
gi|384462088|ref|YP_005674683.1| DNA mismatch repair protein MutS [Clostridium botulinum F str.
230613]
gi|189030763|sp|A7GE45.1|MUTS_CLOBL RecName: Full=DNA mismatch repair protein MutS
gi|152935949|gb|ABS41447.1| DNA mismatch repair protein MutS [Clostridium botulinum F str.
Langeland]
gi|295319105|gb|ADF99482.1| DNA mismatch repair protein MutS [Clostridium botulinum F str.
230613]
Length = 932
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|451820042|ref|YP_007456243.1| DNA mismatch repair protein MutS [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786021|gb|AGF56989.1| DNA mismatch repair protein MutS [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 912
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 6/197 (3%)
Query: 662 HNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+NT+ Q+ L L+TGPN GKS+ +R + +L+ G VPA A+I D I +
Sbjct: 597 NNTILNQNDKELLLITGPNMAGKSTYMRQVALITLMAQIGSFVPASKANISICDKIFTRI 656
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-- 776
+ D A GKS+F VEM E+ +I+ T +SLVL+DE+ RGT T G IA S+IE +
Sbjct: 657 GASDDLAGGKSTFMVEMWEVSNILRNATQKSLVLLDEVGRGTSTYDGLSIAWSVIEYITK 716
Query: 777 -DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
D + C + +TH H + L + ++ + + + K+V+G ES E
Sbjct: 717 NDKLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKMKDSVIFLRKIVEGGADESYGIEV 776
Query: 836 AKREGVPETIIQRAEDL 852
AK G+PE +I RA+++
Sbjct: 777 AKLAGLPEAVINRAKEI 793
>gi|365121681|ref|ZP_09338596.1| DNA mismatch repair protein mutS [Tannerella sp. 6_1_58FAA_CT1]
gi|363644968|gb|EHL84248.1| DNA mismatch repair protein mutS [Tannerella sp. 6_1_58FAA_CT1]
Length = 867
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 152/319 (47%), Gaps = 26/319 (8%)
Query: 555 KVGEEWF--STL-----KVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFA-- 605
KV EEW TL + + L+ Y E A+ K++ L L +EL +N + A
Sbjct: 480 KVPEEWIRKQTLVNAERYITQELKEYEEKILGAEEKIITLETRLFNELILALNEYIPAIQ 539
Query: 606 --SMLLVIGKALFAHVSEGRRRKWVFPALKD-IELD---GANCLKMNGLSPYWFDAAEGS 659
+ + L + + +++ P + D +E+D G + + L P E
Sbjct: 540 HDATQIARLDCLLSFAKIAKENRYIRPEVNDSLEIDIKEGRHPVIEKQLPP-----GESY 594
Query: 660 AVHNTV---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML 716
+N + D Q + ++TGPN GKS+LLR +L G VPAE+A I D I
Sbjct: 595 ITNNVLLNNDTQQIIMITGPNMAGKSALLRQTALIVILAQIGCFVPAEAAHIGVVDKIFT 654
Query: 717 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776
+ + D+ + G+S+F VEM+E I+ ++RSLVL DE+ RGT T G IA +I+E +
Sbjct: 655 RVGASDNISLGESTFMVEMNEAADILNNISNRSLVLFDELGRGTSTYDGISIAWAIVEHI 714
Query: 777 D---NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ +TH H + + K A + + +D + + KLV G S
Sbjct: 715 HEHPRAHAKTLFATHYHELNDMEKTYKRIANYNVSVKEIDNKVIFLRKLVKGGSEHSFGI 774
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P++I++RA D+
Sbjct: 775 HVAKMAGMPQSIVKRAGDI 793
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKA 98
E L + ++ K K P +LL RVGDFYE DA E G L + + A
Sbjct: 3 ETPLMKQYIEMKGKHPDAILLFRVGDFYETFSEDAITASEILGITLTRRANGSAQYVELA 62
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
G P L L L R G V I E+++ P + R I+ PG
Sbjct: 63 GFPHHALDTYLPKLVRAGKRVAICEQLEDPKLTKKLVKRGITELVTPG 110
>gi|339634969|ref|YP_004726610.1| DNA mismatch repair protein MutS [Weissella koreensis KACC 15510]
gi|338854765|gb|AEJ23931.1| DNA mismatch repair protein MutS [Weissella koreensis KACC 15510]
Length = 857
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N + M Q + L+TGPN GKS+ +R + ++ G VPA+SA +P FD I
Sbjct: 587 SYVANDIMMDQNQEIMLITGPNMSGKSTYMRQLALTVIMAQIGSFVPAQSADLPIFDQIF 646
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G S+F VEMSE + + T SL+L DE+ RGT T G +A +IIE
Sbjct: 647 TRIGAADDLISGNSTFMVEMSEANTALQNATKNSLILFDELGRGTATFDGMALAQAIIEH 706
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N+ + STH H + SL ++ +G +G+ + + K++ G +S
Sbjct: 707 IHQNVHAKTLFSTHYHELTSLDQELPQLFNVHVGAHEENGELIFSHKVLAGPADQSYGIN 766
Query: 835 TAKREGVPETIIQRA 849
AK G+P+T+I+RA
Sbjct: 767 VAKLAGLPQTLIERA 781
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIP 96
KE + + + KS++ L R+GDFYE DA + ++E L P +P
Sbjct: 5 KETPMMQQYNEIKSQYHDAFLFYRLGDFYELFNEDAILGSQILELT-LTQRNKNSPNPVP 63
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
AG P + +D L GY V +VE+++ P+QA R + PG+
Sbjct: 64 MAGVPHHAAQNYIDILVDKGYKVAVVEQMEDPSQADGMVKREVVQLITPGT 114
>gi|307707759|ref|ZP_07644238.1| DNA mismatch repair protein MutS [Streptococcus mitis NCTC 12261]
gi|307616257|gb|EFN95451.1| DNA mismatch repair protein MutS [Streptococcus mitis NCTC 12261]
Length = 844
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQMGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|116513155|ref|YP_812062.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris SK11]
gi|123320077|sp|Q02VS3.1|MUTS_LACLS RecName: Full=DNA mismatch repair protein MutS
gi|116108809|gb|ABJ73949.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris SK11]
Length = 840
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 149/298 (50%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F + ++ E E EA K+ + +L GL +E + I L + + L +
Sbjct: 484 ERFGSQELTEIEEIMLEAREKSSSLEYDLFMGLRAETEQYIGRLQALAKTIAEIDCLQSL 543
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLL 673
++ ++ P L + G+ +++ G +A G+ V N +++ + L+
Sbjct: 544 SVVAEKQGYIRPTLTE----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLI 599
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R ++ G VPA++A++P FDAI + + D+ G+S+F V
Sbjct: 600 TGPNMSGKSTYMRQFALTVIMAQIGSFVPAKTANLPIFDAIFTRIGASDNLISGESTFMV 659
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EMSE + TSRSL++ DE+ RGT T G +A +IIE + + IG + +TH H +
Sbjct: 660 EMSEANHAIQKATSRSLIIFDELGRGTATYDGMALAQAIIEYVHEYIGAKTLFATHYHEL 719
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
L ++ + + T +G K+ DG +S AK G+P+T+++RA+
Sbjct: 720 TDLDKELDHLDNVHVATLEQNGNVTFLHKITDGPADKSYGIHVAKIAGLPQTLLERAD 777
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AATEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|377831895|ref|ZP_09814860.1| DNA mismatch repair protein MutS [Lactobacillus mucosae LM1]
gi|377554273|gb|EHT15987.1| DNA mismatch repair protein MutS [Lactobacillus mucosae LM1]
Length = 882
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 154/304 (50%), Gaps = 25/304 (8%)
Query: 559 EWFST--LKVEEALERYHEAGAKAKAKVLE--LLRGLSSELQTKINILVFASMLLVIGKA 614
E FST LK +EAL GA+ K+ LE L G+ ++ IN L + L
Sbjct: 489 ERFSTPELKAKEALI----LGAQEKSTALEYDLFVGVRETVKQAINRLQSLAKALSELDV 544
Query: 615 L--FAHVSEGRRRKWVFPALKDIELDGANCLKM-NGLSPYWFDAAEG--SAVHNTVDMQ- 668
L FA VSE +V P +++ A+ L++ NG P + G V N V M
Sbjct: 545 LQSFAVVSEDYH--FVRP-----QMNQAHRLEIKNGRHPV-VEKVMGYQKYVPNDVLMDP 596
Query: 669 --SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPAD 726
S+ L+TGPN GKS+ +R + +++ G VPA+ A++P FD I + + D
Sbjct: 597 QTSILLITGPNMSGKSTYMRQLALTAVMAQMGCFVPADQANLPIFDQIFTRIGAADDLIA 656
Query: 727 GKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIV 785
G+S+F VEM E + + T+ SL+L DEI RGT T G +A +IIE + D++G +
Sbjct: 657 GESTFMVEMMEANNALQHATANSLILFDEIGRGTATYDGMALAQAIIEYVHDHVGAKTLF 716
Query: 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
STH H + L +K+ +G +G+ V K+ DG +S AK G+P +
Sbjct: 717 STHYHELTDLEQTLKHLHNVHVGATEENGELVFLHKIEDGPADKSYGIHVAKLAGMPADL 776
Query: 846 IQRA 849
++RA
Sbjct: 777 LKRA 780
Score = 47.0 bits (110), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDAC----------ILVEYAGLNPFGGLRPESIPKAG 99
Q K ++P L R+GDFYE DA ++ NP IP G
Sbjct: 14 QVKDQYPDAFLFYRLGDFYELFNDDAVKGAQILELTLTTRNHSAANP--------IPMCG 65
Query: 100 CPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
P + +D L GY V I E+++ P +A+ R ++ PG+
Sbjct: 66 VPHKAVDGYVDILIDKGYKVAICEQMEDPKKAKGMVKRAVTRLITPGT 113
>gi|187779607|ref|ZP_02996080.1| hypothetical protein CLOSPO_03203 [Clostridium sporogenes ATCC
15579]
gi|187773232|gb|EDU37034.1| DNA mismatch repair protein MutS [Clostridium sporogenes ATCC
15579]
Length = 931
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L I+ ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
>gi|284165652|ref|YP_003403931.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM
5511]
gi|284015307|gb|ADB61258.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM
5511]
Length = 893
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 10/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T K++E + A +A + EL + SE+ ++ + + + AL +
Sbjct: 520 ERFVTPKLKEREDEIVGAQQRADEREYELFCAVRSEIAAEVERVQGLADAIATLDALVSL 579
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMN---GLSPYWFDAAEGSAVHNTVDM---QSLFL 672
+ + + P + +E D L+++ G P + + S V N ++ + L +
Sbjct: 580 ATVAAQYDYCRPEM--LERDDHEGLEIDIEGGRHPV-VERTQESFVPNDANLTHDRRLAV 636
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + LL G VPA SA + D I + + D A G+S+F
Sbjct: 637 ITGPNMSGKSTYMRQVAQIVLLAQVGSFVPARSARLTPVDRIFTRVGASDDIAGGRSTFM 696
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E + D +G + +TH H
Sbjct: 697 VEMDELATILREADERSLVLLDEVGRGTSTADGMAIAQAITEHVHDRVGATTLFATHHHP 756
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ A + DG+ V ++ G S E A GVPET+++R+ +
Sbjct: 757 LTELADDLEAAFTLHFEVDEDDGEVVFHHEIAPGAATGSYGVEVATAAGVPETVVERSRE 816
Query: 852 L 852
L
Sbjct: 817 L 817
>gi|150020893|ref|YP_001306247.1| DNA mismatch repair protein MutS [Thermosipho melanesiensis BI429]
gi|189083203|sp|A6LLR1.1|MUTS_THEM4 RecName: Full=DNA mismatch repair protein MutS
gi|149793414|gb|ABR30862.1| DNA mismatch repair protein MutS [Thermosipho melanesiensis BI429]
Length = 819
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 7/191 (3%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + ++++TGPN GKS+ +R + +++ G VPA+ A IP FD + M + D +
Sbjct: 587 DRRRMYIVTGPNMSGKSTYIRQVGLIAVMAQIGSFVPADDAEIPIFDRVFTRMGARDDIS 646
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGI 784
GKS+F +EMSE+ I+ T +SLVL+DE+ RGT T G IA ++ E + N IGC +
Sbjct: 647 TGKSTFLIEMSEVALILEKATKKSLVLLDEVGRGTSTFDGISIAWAMSEYIYNEIGCETM 706
Query: 785 VSTHLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+TH + L IKN + T + V K+V+GI S E A+ GV
Sbjct: 707 FATHFTELTELSDVYEGIKNLTIEVRET---NNGVVFLHKVVEGIADRSYGIEVAQIAGV 763
Query: 842 PETIIQRAEDL 852
P+ +++RA+++
Sbjct: 764 PDGVVERAKEI 774
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDD 111
K K+ +LL R+GDFYEA DA I+ + LN R ++ P AG P L L
Sbjct: 18 KEKYKDAILLFRLGDFYEAFFEDAEIISKV--LNIVLTKR-QNAPMAGIPYHALDNYLKK 74
Query: 112 LTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L +GY V I E+++ +QA+ R ++ PG+
Sbjct: 75 LVESGYKVAICEQMEDASQAKGIVKREVTRVITPGT 110
>gi|375308898|ref|ZP_09774180.1| hypothetical protein WG8_2705, partial [Paenibacillus sp. Aloe-11]
gi|375079110|gb|EHS57336.1| hypothetical protein WG8_2705, partial [Paenibacillus sp. Aloe-11]
Length = 636
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 141/300 (47%), Gaps = 46/300 (15%)
Query: 579 KAKAKVLELLRGLSSELQTKIN---------------ILVFASMLLVIGKALFAH----- 618
+A+ K+++L L SEL++K+N I V+ SM V + F
Sbjct: 202 EAEDKMVDLEYTLFSELRSKLNAEIPRLQKLAEQVAEIDVYQSMASVSAERGFVKPELTT 261
Query: 619 -----VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLL 673
V +GR P ++ + DG+ NG + DA + L+
Sbjct: 262 GYDFVVEQGRH-----PVVEAVMKDGS--FIANGTALEEADA-------------HILLI 301
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R + +++ G VPA A +P D I + + D G+S+F V
Sbjct: 302 TGPNMAGKSTYMRQVALIAIMAQIGCFVPAARAKVPMLDRIFTRIGAADDLIGGQSTFMV 361
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EM++I+ + T RSL++IDE+ RGT T++G IA ++IE + D IGC +VSTH H +
Sbjct: 362 EMADIQVMTDKATPRSLIIIDELGRGTSTSEGMAIAQAVIEFVHDTIGCKALVSTHFHEL 421
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
L + + +M + + KL+ G S A+ G+P II+RA L
Sbjct: 422 AHLEQSLSSLRNYSMAVQESGDKVNFLRKLIQGAASSSYGIYCARLAGLPSNIIERANGL 481
>gi|385839549|ref|YP_005877179.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris A76]
gi|358750777|gb|AEU41756.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris A76]
Length = 840
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 149/298 (50%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F + ++ E E EA K+ + +L GL +E + I L + + L +
Sbjct: 484 ERFGSQELTEIEEIMLEAREKSSSLEYDLFMGLRAETEQYIGRLQALAKTIAEIDCLQSL 543
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLL 673
++ ++ P L + G+ +++ G +A G+ V N +++ + L+
Sbjct: 544 SVVAEKQGYIRPTLTE----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLI 599
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R ++ G VPA++A++P FDAI + + D+ G+S+F V
Sbjct: 600 TGPNMSGKSTYMRQFALTVIMAQIGSFVPAKTANLPIFDAIFTRIGASDNLISGESTFMV 659
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EMSE + TSRSL++ DE+ RGT T G +A +IIE + + IG + +TH H +
Sbjct: 660 EMSEANHAIQKATSRSLIIFDELGRGTATYDGMALAQAIIEYVHEYIGAKTLFATHYHEL 719
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
L ++ + + T +G K+ DG +S AK G+P+T+++RA+
Sbjct: 720 TDLDKELDHLDNVHVATLEQNGNVTFLHKITDGPADKSYGIHVAKIAGLPQTLLERAD 777
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AATEYIDKLVYLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|332024253|gb|EGI64457.1| Putative DNA mismatch repair protein Msh6 [Acromyrmex echinatior]
Length = 1122
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 26/332 (7%)
Query: 539 EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTK 598
E Q+K++ P + + ++ G + + T + +E L R A + +L R + ++ K
Sbjct: 767 ESQVKKVGPGYELQSQRKGFKRYYTAEAKELLTRQMNAEEHKDKVLKDLNRRIFAQFSEK 826
Query: 599 INILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD-------IEL-DGAN-CLKMNGLS 649
++ A L L + R P + D I++ DG + C+ +
Sbjct: 827 YDMWHAAVYKLATMDVLISLADYARNGDMCIPEIHDGSDGEIFIKIKDGQHPCIVSDNFI 886
Query: 650 PY-WFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI 708
P A +G+A S +LTGPN GGKS+L+R + +++ G VPA S +
Sbjct: 887 PNDTLLATDGTA--------SFMILTGPNMGGKSTLMRQMGLITIMAQIGSYVPASSCCM 938
Query: 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCI 768
D I + + D G+S+F VE+SE +I+ T SLVL+DE+ RGT T GT I
Sbjct: 939 TLVDRIFTRLGANDDILAGQSTFLVELSETATILQRATPYSLVLLDELGRGTSTYDGTAI 998
Query: 769 AGSIIETLDNIGCLGIVSTHLHGI---FSLPLKIKNAAYKAMGTEYLDGQTVPT-----W 820
A ++++ L + C + STH H + + ++ A M + + +
Sbjct: 999 AAAVVDALTKLKCRTLFSTHYHSLVEDYKTNEEVTLAHMACMVETEEEEEVSQETVTFLY 1058
Query: 821 KLVDGICRESLAFETAKREGVPETIIQRAEDL 852
KL +G C +S F A+ GVP I +RA ++
Sbjct: 1059 KLSEGACPKSYGFNAARLAGVPSVITKRAHEI 1090
>gi|121602103|ref|YP_989548.1| DNA mismatch repair protein [Bartonella bacilliformis KC583]
gi|421761348|ref|ZP_16198151.1| DNA mismatch repair protein MutS [Bartonella bacilliformis INS]
gi|166232116|sp|A1UU95.1|MUTS_BARBK RecName: Full=DNA mismatch repair protein MutS
gi|120614280|gb|ABM44881.1| DNA mismatch repair protein MutS [Bartonella bacilliformis KC583]
gi|411173132|gb|EKS43180.1| DNA mismatch repair protein MutS [Bartonella bacilliformis INS]
Length = 914
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 14/244 (5%)
Query: 610 VIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS 669
+I +L H++ GR P ++ L+ + P+ + SA +N +
Sbjct: 610 IIDNSLTFHITAGRH-----PVVE-------QALRKQAIEPFVANDCNLSAKNNH-QYAA 656
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S
Sbjct: 657 IWLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGVVDRLFSRVGASDDLARGRS 716
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F +EM E +I+ +S SLV++DEI RGT T G IA + +E L + C I++TH
Sbjct: 717 TFMMEMVETATILNHASSHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNHCRAILATH 776
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L K+ M + +G + ++ +G S + AK G+PE +I R
Sbjct: 777 FHEMTALTKKLDRLHNVTMKVKNWEGNVIFLHEVTEGAADRSYGVQVAKLAGLPEEVITR 836
Query: 849 AEDL 852
A D+
Sbjct: 837 ATDV 840
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNG 116
+L R+GDFYE DA I + G L G + IP G PV + L L G
Sbjct: 44 LLFYRMGDFYELFFNDAIIASQALGITLTTRGKHLGKDIPMCGVPVHSADDYLQKLIACG 103
Query: 117 YSVCIVEEVQGPTQARSRKSRFI 139
Y V + E+++ P +A+ R S+ I
Sbjct: 104 YRVAVCEQMEDPAEAKKRGSKSI 126
>gi|420160966|ref|ZP_14667737.1| DNA mismatch repair protein [Weissella koreensis KCTC 3621]
gi|394745716|gb|EJF34534.1| DNA mismatch repair protein [Weissella koreensis KCTC 3621]
Length = 857
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N + M Q + L+TGPN GKS+ +R + ++ G VPA+SA +P FD I
Sbjct: 587 SYVANDIMMDQNQEIMLITGPNMSGKSTYMRQLALTVIMAQIGSFVPAQSADLPIFDQIF 646
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G S+F VEMSE + + T SL+L DE+ RGT T G +A +IIE
Sbjct: 647 TRIGAADDLISGNSTFMVEMSEANTALQNATKNSLILFDELGRGTATFDGMALAQAIIEH 706
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N+ + STH H + SL ++ +G +G+ + + K++ G +S
Sbjct: 707 IHQNVHAKTLFSTHYHELTSLDQELPQLFNVHVGAHEENGELIFSHKVLAGPADQSYGIN 766
Query: 835 TAKREGVPETIIQRA 849
AK G+P+T+I+RA
Sbjct: 767 VAKLAGLPQTLIERA 781
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIP 96
KE + + + KS++ L R+GDFYE DA + ++E L P +P
Sbjct: 5 KETPMMQQYNEIKSQYHDAFLFYRLGDFYELFNEDAILGSQILELT-LTQRNKNSPNPVP 63
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
AG P + +D L GY V +VE+++ P+QA R + PG+
Sbjct: 64 MAGVPHHAAQNYIDILVDKGYKVAVVEQMEDPSQADGMVKREVVQLITPGT 114
>gi|157414251|ref|YP_001485117.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT
9215]
gi|157388826|gb|ABV51531.1| putative DNA mismatch repair protein [Prochlorococcus marinus str.
MIT 9215]
Length = 913
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 100/186 (53%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q L +LTGPN GKS +R + +L G VPA +A I D I + + D + G
Sbjct: 713 QKLIILTGPNASGKSCFIRQLGLIQILAQIGSFVPANNAEIKIADRIFTRIGAVDDQSSG 772
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVS 786
+S+F VEMSE SI+ TS SLVL+DEI RGT T G IA S+ E L I C I +
Sbjct: 773 QSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKIIQCNTIFA 832
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L KN + E + Q + + ++V G +S E AK GVP+ +I
Sbjct: 833 THYHELNYLKNSNKNIQNFQVLVEQNNDQLIFSHRIVKGGSNKSYGIEAAKLAGVPKEVI 892
Query: 847 QRAEDL 852
++A+ +
Sbjct: 893 EKAKSV 898
>gi|383938101|ref|ZP_09991324.1| DNA mismatch repair protein MutS [Streptococcus pseudopneumoniae
SK674]
gi|383714987|gb|EID70970.1| DNA mismatch repair protein MutS [Streptococcus pseudopneumoniae
SK674]
Length = 844
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMMAIMAQMGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVEIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|427431014|ref|ZP_18920710.1| DNA mismatch repair protein MutS [Caenispirillum salinarum AK4]
gi|425878191|gb|EKV26910.1| DNA mismatch repair protein MutS [Caenispirillum salinarum AK4]
Length = 909
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 142/301 (47%), Gaps = 14/301 (4%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
FST+++ E ++ A KA A LEL L E+ + + A+ L
Sbjct: 540 FSTVELSELEDKIRGAADKALALELELFADLVKEVLARGQEIADAAAALAELDVTAGLAE 599
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAA-----EGSAVHNTVDM---QSLFL 672
R++V P ++ + G +AA +G V N D+ Q L+L
Sbjct: 600 LAVDRRYVRPVVEQ-----GTAFDIRGGRHPVVEAALERAGDGPFVANDCDLSPEQRLWL 654
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ LR ++L G VPAESA I D + + + D A G+S+F
Sbjct: 655 ITGPNMAGKSTFLRQNALIAILAQMGAFVPAESARIGVVDRLFSRVGAADDLARGRSTFM 714
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHG 791
VEM E +I+ T RSLV++DEI RGT T G IA + +E L C + +TH H
Sbjct: 715 VEMVETAAILNQATERSLVILDEIGRGTATFDGLSIAWATVENLHEANRCRALFATHYHE 774
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ +L ++K + +M + G+ V ++ G S A+ G+P +I RAE+
Sbjct: 775 LTALTARLKRLSCHSMRVKEWQGEVVFLHEVAAGAADRSYGIHVARLAGLPPAVIARAEE 834
Query: 852 L 852
+
Sbjct: 835 V 835
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K + +L R+GDFYE DA E L G E IP G PV +
Sbjct: 36 QYLSIKREHADCILFYRMGDFYELFFDDAVKAAEALDIALTKRGKHAGEDIPMCGVPVHS 95
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L R G+ V + E+++ P +A+ R
Sbjct: 96 HEAYLAKLIRKGFKVAVCEQMEDPAEAKKR 125
>gi|417923013|ref|ZP_12566488.1| DNA mismatch repair protein MutS [Streptococcus mitis SK569]
gi|342837366|gb|EGU71559.1| DNA mismatch repair protein MutS [Streptococcus mitis SK569]
Length = 844
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDISIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLINVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|414075212|ref|YP_007000429.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris UC509.9]
gi|413975132|gb|AFW92596.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 840
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 149/298 (50%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F + ++ E E EA K+ + +L GL +E + I L + + L +
Sbjct: 484 ERFGSQELTEIEEIMLEAREKSSSLEYDLFMGLRAETEQYIGRLQALAKTIAEIDCLQSL 543
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLL 673
++ ++ P L + G+ +++ G +A G+ V N +++ + L+
Sbjct: 544 SVIAEKQGYIRPTLTE----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLI 599
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R ++ G VPA++A++P FDAI + + D+ G+S+F V
Sbjct: 600 TGPNMSGKSTYMRQFALTVIMAQIGSFVPAKTANLPIFDAIFTRIGASDNLISGESTFMV 659
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EMSE + TSRSL++ DE+ RGT T G +A +IIE + + IG + +TH H +
Sbjct: 660 EMSEANHAIQKATSRSLIIFDELGRGTATYDGMALAQAIIEYVHEYIGAKTLFATHYHEL 719
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
L ++ + + T +G K+ DG +S AK G+P+T+++RA+
Sbjct: 720 TDLDKELDHLDNVHVATLEQNGNVTFLHKITDGPADKSYGIHVAKIAGLPQTLLERAD 777
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AATEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|418967666|ref|ZP_13519317.1| DNA mismatch repair protein MutS [Streptococcus mitis SK616]
gi|383343081|gb|EID21277.1| DNA mismatch repair protein MutS [Streptococcus mitis SK616]
Length = 844
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDISIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLINVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|7012942|gb|AAF35250.1|AF227632_1 mismatch binding protein Mus3 [Zea mays]
Length = 629
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 12/207 (5%)
Query: 656 AEGSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
+GS V N V + S +LTGPN GGKS+LLR +C +L G VPAE +
Sbjct: 360 GKGSFVPNDVKIGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGADVPAEKLELSL 419
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
D I + M + D G+S+F VE+ E S++++ T SLV++DE+ RGT T+ G IA
Sbjct: 420 VDRIFVRMGARDHIMAGQSTFLVELEETASVLSSATKNSLVVLDELGRGTSTSDGQAIAA 479
Query: 771 SIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-----QTVPTWKLVD 824
S++E L + CLG+ STH H + ++ + M E ++G + ++L
Sbjct: 480 SVLEYLVHQVQCLGLFSTHYHRL-AMEHNDTKVSLCHMACEVVEGGGGLEEVTFLYRLTP 538
Query: 825 GICRESLAFETAKREGVPETIIQRAED 851
G C +S A+ G+P ++QRA +
Sbjct: 539 GACPKSYGVNVARLAGIPTKLLQRANE 565
>gi|448358891|ref|ZP_21547565.1| DNA mismatch repair protein MutS [Natrialba chahannaoensis JCM
10990]
gi|445644571|gb|ELY97584.1| DNA mismatch repair protein MutS [Natrialba chahannaoensis JCM
10990]
Length = 912
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 148/318 (46%), Gaps = 9/318 (2%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T +++E + A +A + EL + S++ ++ + + L AL +
Sbjct: 544 ERFVTPELKEREDEIVGAEERADEREYELFCEVRSDIGDEVERVQGLADALATLDALVSL 603
Query: 619 VSEGRRRKWVFPALKDIE---LDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFL 672
+ + + P + D E DG + + G + + S V N+ Q L +
Sbjct: 604 ATVAAQYDYCRPEILDPESERTDGGVEIDITGGRHPVVERTQESFVPNSARFDAEQRLAV 663
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + LL G VPAESA + + I + + D A G+S+F
Sbjct: 664 ITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAESARLTPVERIFTRVGASDDIAGGRSTFM 723
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +TH H
Sbjct: 724 VEMDELATILRDADERSLVLLDEVGRGTSTADGLAIAQAITEHLHDAVGATTLFATHHHP 783
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L + +A E DG+ V ++ G S E A GVPE ++ R+ +
Sbjct: 784 LTELADDLPDAFTLHFEVEQTDGEVVFHHEIEPGAATGSYGVEVATAAGVPEDVVDRSRE 843
Query: 852 LYIACGVNCVMIAAREQP 869
L A AR +P
Sbjct: 844 LVDANA--AAETTARTEP 859
>gi|419766521|ref|ZP_14292714.1| DNA mismatch repair protein MutS [Streptococcus mitis SK579]
gi|383353986|gb|EID31573.1| DNA mismatch repair protein MutS [Streptococcus mitis SK579]
Length = 844
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDISIQLITGPNMSGKSTYMRQLAMTAVMAQMGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|312977892|ref|ZP_07789638.1| DNA mismatch repair protein MutS [Lactobacillus crispatus CTV-05]
gi|310895199|gb|EFQ44267.1| DNA mismatch repair protein MutS [Lactobacillus crispatus CTV-05]
Length = 857
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M +++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 579 GSYIPNDVKMDEGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 638
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 639 FTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 698
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 699 YLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 758
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 759 HVAQLAGLPRNVLREATKL 777
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 6 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNRTKNPIPMAGVPHMAVD 64
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 65 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 105
>gi|317129122|ref|YP_004095404.1| DNA mismatch repair protein MutS [Bacillus cellulosilyticus DSM
2522]
gi|315474070|gb|ADU30673.1| DNA mismatch repair protein MutS [Bacillus cellulosilyticus DSM
2522]
Length = 872
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 10/203 (4%)
Query: 657 EGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
+G V N + + + + L+TGPN GKS+ +R + +++ G VPA++A +P FD
Sbjct: 586 KGDYVANDIRLNEERGMLLITGPNMAGKSTYMRQLALIAIMAQIGSFVPAKNAKLPIFDQ 645
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A G+S+F VEM E R V+ T SL+L+DEI RGT T G +A +I+
Sbjct: 646 IFTRIGAADDLAQGQSTFMVEMMETRHAVSRATKNSLILLDEIGRGTSTYDGMALAQAIM 705
Query: 774 ETLDN-IGCLGIVSTHLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 829
E + N IG + STH H + +L ++N AM DG+ V K++DG
Sbjct: 706 EYIHNEIGAKTLFSTHYHELTTLSEHLSHLRNVHVSAMEE---DGKVVFLHKVIDGAADR 762
Query: 830 SLAFETAKREGVPETIIQRAEDL 852
S A+ +P ++I RA+ +
Sbjct: 763 SYGIYVAELAELPASLISRAKSI 785
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GLRPESIPKAGCPVVNL 105
+ L K+++ L R+GDFYE DA + G ++IP G P +
Sbjct: 11 QYLSIKAQYEDAFLFFRLGDFYELFFDDAKKAASELEITLTSRGKGEDAIPMCGVPHHSA 70
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
Q + L NG+ V I E+ + P A+ R + PG+
Sbjct: 71 EQYISQLINNGFKVAICEQTEDPQLAKGVVRREVVQVITPGT 112
>gi|256844548|ref|ZP_05550034.1| DNA mismatch repair protein MutS [Lactobacillus crispatus
125-2-CHN]
gi|256849063|ref|ZP_05554496.1| DNA mismatch repair protein mutS [Lactobacillus crispatus MV-1A-US]
gi|262047545|ref|ZP_06020500.1| DNA mismatch repair protein MutS [Lactobacillus crispatus MV-3A-US]
gi|256613626|gb|EEU18829.1| DNA mismatch repair protein MutS [Lactobacillus crispatus
125-2-CHN]
gi|256713839|gb|EEU28827.1| DNA mismatch repair protein mutS [Lactobacillus crispatus MV-1A-US]
gi|260572121|gb|EEX28686.1| DNA mismatch repair protein MutS [Lactobacillus crispatus MV-3A-US]
Length = 857
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M +++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 579 GSYIPNDVKMDEGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 638
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 639 FTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 698
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 699 YLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 758
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 759 HVAQLAGLPRNVLREATKL 777
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 6 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNRTKNPIPMAGVPHMAVD 64
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 65 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 105
>gi|406987479|gb|EKE07821.1| hypothetical protein ACD_17C00507G0001, partial [uncultured
bacterium]
Length = 761
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 157/342 (45%), Gaps = 13/342 (3%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL 615
V E F T ++++ R A ++KA LEL L E+ + + A+ + +
Sbjct: 404 VNAERFLTQELKDFEHRVLTAEERSKAIELELFEHLRKEIAKESGPIHQAAKTIAKIDVM 463
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSL 670
A + R +W P + D ++ L++ G ++ G A + N + Q L
Sbjct: 464 LALTTIAVRNQWTRPIV-----DHSDTLEIIGGRHPVIESHVGRASFIANDTHLSPKQQL 518
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS+ +R + ++L G VPA S + D I + + D A G+S+
Sbjct: 519 LLITGPNMAGKSTYIRQVALIAILAQMGSYVPATSTRMGIIDKIFSRIGASDDIARGQST 578
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE---TLDNIGCLGIVST 787
F VEMSE +I+ TSRSLVL+DEI RGT T G IA ++ E T + +T
Sbjct: 579 FMVEMSETANILNNATSRSLVLLDEIGRGTSTYDGISIAWAVAEYLLTTHRKQAKTLFAT 638
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H + L NAA + +D V K++ G +S AK G+P IQ
Sbjct: 639 HYWELTRLKNHFPNAANVQTAVKEIDSGIVFLRKIIPGGTDKSYGIHVAKLAGLPNQAIQ 698
Query: 848 RAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKL 889
RAE++ V +E+ ++ A+ + +L KK+
Sbjct: 699 RAEEMLKELERGFVHSVDKEEQMSFLLSAAKEHPVLNRLKKI 740
>gi|295692267|ref|YP_003600877.1| DNA mismatch repair protein muts [Lactobacillus crispatus ST1]
gi|295030373|emb|CBL49852.1| DNA mismatch repair protein mutS [Lactobacillus crispatus ST1]
Length = 858
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M +++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 580 GSYIPNDVKMDEGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 639
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 640 FTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 699
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 700 YLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 759
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 760 HVAQLAGLPRNVLREATKL 778
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 7 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNRTKNPIPMAGVPHMAVD 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 66 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 106
>gi|350266018|ref|YP_004877325.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349598905|gb|AEP86693.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 863
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 598 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 657
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 658 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 717
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +PE
Sbjct: 718 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPED 777
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 778 LISRAQDI 785
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 15 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 74
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 75 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 117
>gi|410458687|ref|ZP_11312444.1| DNA mismatch repair protein MutS [Bacillus azotoformans LMG 9581]
gi|409931037|gb|EKN68025.1| DNA mismatch repair protein MutS [Bacillus azotoformans LMG 9581]
Length = 873
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R I ++L G VPA+ A +P FD I + + D G+S
Sbjct: 602 MLLITGPNMSGKSTYMRQIALTAILAQIGCYVPAQKAVLPIFDQIFTRIGAADDLVSGQS 661
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTH 788
+F VEM E ++ +T T SL+L+DEI RGT T G +A +IIE + + IG + STH
Sbjct: 662 TFMVEMLEAKNAITKATQNSLILLDEIGRGTSTYDGMALAQAIIEYIHHEIGAKTLFSTH 721
Query: 789 LHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
H + SL ++KN A+ +G+ V K+ DG +S A+ +PE +
Sbjct: 722 YHELTSLEQSLERLKNVHVSAIEE---NGKVVFLHKVKDGAADKSYGIHVAELAELPERL 778
Query: 846 IQRAEDL 852
I+RA+++
Sbjct: 779 IKRAKEI 785
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A +E GG+ E IP G P
Sbjct: 10 QYLSVKAQYMDAFLFFRLGDFYEMFFDDAIKASQELEITLTGRDGGVE-EKIPMCGVPYH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 69 SAENYINQLIEKGYKVAICEQVEDPKSAKGVVRREVVQLITPGT 112
>gi|365903634|ref|ZP_09441457.1| DNA mismatch repair protein MutS [Lactobacillus malefermentans KCTC
3548]
Length = 880
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E FST +++E + EA K+ A L L +++ I L + ++ L F
Sbjct: 496 ERFSTPELKEREQLILEAQEKSAALEYTLFTDLREKVKLAIQRLQKLAQVISTLDVLQSF 555
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLFL 672
A VSE R V P + + + + G P S V N + M S+ L
Sbjct: 556 AVVSENYR--LVQPQMTQ---NAHDLQIVQGRHPVVEKVMGRQSYVPNDIRMDPQTSILL 610
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + ++ G VPAESA +P FD I + + D G+S+F
Sbjct: 611 ITGPNMSGKSTYMRQLALTVIMAQMGCFVPAESAKLPIFDQIFTRIGAADDLISGQSTFM 670
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E V T SL+L DEI RGT T G +A SIIE + D++ + STH H
Sbjct: 671 VEMQEANQAVLHATQNSLILFDEIGRGTATYDGMALAQSIIEYVHDHVHAKTLFSTHYHE 730
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ +L + +G +G+ V ++ +G +S AK G+PE ++ RA D
Sbjct: 731 LTALEDNLSELRNVHVGAVEKNGELVFLHQVENGPADKSYGIHVAKLAGMPEELLNRASD 790
Query: 852 L 852
+
Sbjct: 791 I 791
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 48 MLQF---KSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCP 101
M+Q+ K ++P L R+GDFYE DA L+E L IP G P
Sbjct: 14 MVQYQKIKDQYPDAFLFYRLGDFYEMFNEDAIKGAQLLELT-LTTRNHNSDNPIPMCGVP 72
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ +D L GY V I E+++ P A+ R + PG+ G
Sbjct: 73 HHAVQNYIDILVDKGYKVAICEQMEDPKLAKGMVKREVIQLITPGTNTEVG 123
>gi|293381577|ref|ZP_06627564.1| DNA mismatch repair protein MutS [Lactobacillus crispatus 214-1]
gi|290921847|gb|EFD98862.1| DNA mismatch repair protein MutS [Lactobacillus crispatus 214-1]
Length = 865
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M +++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 587 GSYIPNDVKMDEGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 647 FTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 767 HVAQLAGLPRNVLREATKL 785
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 14 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNRTKNPIPMAGVPHMAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 73 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 113
>gi|297584115|ref|YP_003699895.1| DNA mismatch repair protein MutS [Bacillus selenitireducens MLS10]
gi|297142572|gb|ADH99329.1| DNA mismatch repair protein MutS [Bacillus selenitireducens MLS10]
Length = 855
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 123/244 (50%), Gaps = 15/244 (6%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGAN--CLKMNGLSPYWFDAAE-GSAVHNTVDM---QS 669
FA VSE + +V P LK AN ++G P + G V N + M +
Sbjct: 547 FAEVSE--QNGYVQPTLK------ANGPVKVIHGRHPVVETMIDHGDYVANDLTMDEDKD 598
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + S+L G VPA+ A +P FD I + + D A G+S
Sbjct: 599 ILLITGPNMAGKSTYMRQLAHLSILAQIGCFVPADEAELPVFDQIFTRIGAADDLAQGQS 658
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E R + T +SL+L+DEI RGT T G +A ++IE + D + + STH
Sbjct: 659 TFMVEMLETRQALKHATRQSLILLDEIGRGTSTYDGMSLAQAVIEYVHDTVQAKTLFSTH 718
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L ++ + DG+ V K++DG S A+ +P +I+R
Sbjct: 719 YHELTQLADNLERCHNVHVAAREEDGEVVFLHKVIDGPADRSYGIYVAQLAELPREVIER 778
Query: 849 AEDL 852
A++L
Sbjct: 779 AKEL 782
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 9/179 (5%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GLRPESIPKAGCPVVNL 105
+ L+ K+ + L R+GDFYE DA + + G + IP G P +
Sbjct: 9 QYLRIKNDYQDAFLFFRLGDFYELFFEDAKRAAKELEITLTARGKGEDKIPMCGVPHHSS 68
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEP 165
+Q + L G+ V I E+ + P QA+ R + PG+ G D E
Sbjct: 69 KQYIRQLIEKGFKVAICEQTEDPAQAKGVVRREVVQVITPGTVMDTGA------FDDKEN 122
Query: 166 MPVIGVSRSA--KGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQN 222
+I +S S+ + + ++ T + L + DAL+++L + + + S+ ++
Sbjct: 123 NFLIALSESSDNRETALAALDTTTGEFRLTKLDSNDALISELAVYQCREVVIDDSIDED 181
>gi|423318198|ref|ZP_17296095.1| DNA mismatch repair protein mutS [Lactobacillus crispatus FB049-03]
gi|423320486|ref|ZP_17298358.1| DNA mismatch repair protein mutS [Lactobacillus crispatus FB077-07]
gi|405596687|gb|EKB70020.1| DNA mismatch repair protein mutS [Lactobacillus crispatus FB049-03]
gi|405605090|gb|EKB78157.1| DNA mismatch repair protein mutS [Lactobacillus crispatus FB077-07]
Length = 865
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M +++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 587 GSYIPNDVKMDEGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 647 FTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 767 HVAQLAGLPRNVLREATKL 785
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 14 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNRTKNPIPMAGVPHMAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 73 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 113
>gi|227877609|ref|ZP_03995663.1| DNA mismatch repair protein MutS [Lactobacillus crispatus JV-V01]
gi|227862803|gb|EEJ70268.1| DNA mismatch repair protein MutS [Lactobacillus crispatus JV-V01]
Length = 865
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M +++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 587 GSYIPNDVKMDEGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 647 FTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + + + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 767 HVAQLAGLPRNVLREATKL 785
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 14 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNRTKNPIPMAGVPHMAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 73 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 113
>gi|209542482|ref|YP_002274711.1| DNA mismatch repair protein MutS [Gluconacetobacter diazotrophicus
PAl 5]
gi|209530159|gb|ACI50096.1| DNA mismatch repair protein MutS [Gluconacetobacter diazotrophicus
PAl 5]
Length = 873
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + LLTGPN GKS+ LR A +L GL VPA++A I D + + + D A G
Sbjct: 618 QRVMLLTGPNMAGKSTFLRQTALAVILAQAGLPVPAKAARIGVVDRLFSRVGASDDLARG 677
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM+E +I+ RSLV++DEI RGT T G IA S++E + + C I +
Sbjct: 678 RSTFMVEMTETAAILNQAGPRSLVVVDEIGRGTATLDGLAIAWSVLEAMHSTLRCRSIFA 737
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L + + M GQ + +++ G R S A+ GVPE ++
Sbjct: 738 THFHELAELAESLPRLSPHTMSVREWKGQVIFQHEVIPGSARRSWGVHVARLAGVPEPVV 797
Query: 847 QRAEDL 852
+RA L
Sbjct: 798 RRAARL 803
>gi|162147863|ref|YP_001602324.1| DNA mismatch repair protein MutS [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786440|emb|CAP56022.1| DNA mismatch repair protein mutS [Gluconacetobacter diazotrophicus
PAl 5]
Length = 873
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + LLTGPN GKS+ LR A +L GL VPA++A I D + + + D A G
Sbjct: 618 QRVMLLTGPNMAGKSTFLRQTALAVILAQAGLPVPAKAARIGVVDRLFSRVGASDDLARG 677
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM+E +I+ RSLV++DEI RGT T G IA S++E + + C I +
Sbjct: 678 RSTFMVEMTETAAILNQAGPRSLVVVDEIGRGTATLDGLAIAWSVLEAMHSTLRCRSIFA 737
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L + + M GQ + +++ G R S A+ GVPE ++
Sbjct: 738 THFHELAELAESLPRLSPHTMSVREWKGQVIFQHEVIPGSARRSWGVHVARLAGVPEPVV 797
Query: 847 QRAEDL 852
+RA L
Sbjct: 798 RRAARL 803
>gi|332638521|ref|ZP_08417384.1| DNA mismatch repair protein MutS [Weissella cibaria KACC 11862]
Length = 880
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 107/198 (54%), Gaps = 4/198 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N V M +++ L+TGPN GKS+ +R + ++ G VPA A +P FD I
Sbjct: 588 SYVANDVFMDEDETIMLITGPNMSGKSTYMRQLALTVVMAQIGSYVPASEAELPIFDQIF 647
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G S+F VEMSE + + T RSL+L DE+ RGT T G +A +IIE
Sbjct: 648 TRIGAADDLISGNSTFMVEMSEANTAIQNATKRSLILFDELGRGTATYDGMALAQAIIEH 707
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ +N + STH H + +L ++ N +G +G+ V + K++ G +S
Sbjct: 708 VHNNTKAKTLFSTHYHELTALSDELPNLRNVHVGATEENGELVFSHKVLTGPADQSYGIN 767
Query: 835 TAKREGVPETIIQRAEDL 852
AK G+P+++I RA D+
Sbjct: 768 VAKLAGLPDSLIDRAADI 785
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIP 96
KE + + + K+++P L R+GDFYE DA + L+E L E IP
Sbjct: 5 KETPMMKQYNEIKAQYPDAFLFYRLGDFYELFNDDAVLGSQLLELT-LTQRNKNSAEPIP 63
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
AG P + +D L GY V +VE+++ P +A R + PG+
Sbjct: 64 MAGVPHHAAQNYIDILVDKGYKVAVVEQMENPAEAEGMVKREVVQLVTPGT 114
>gi|448391866|ref|ZP_21566961.1| DNA mismatch repair protein MutS [Haloterrigena salina JCM 13891]
gi|445665278|gb|ELZ17956.1| DNA mismatch repair protein MutS [Haloterrigena salina JCM 13891]
Length = 897
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 10/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T K++E + A +A + EL + S++ ++ + + + AL +
Sbjct: 521 ERFVTPKLKEREDEIVGAQQRADEREYELFCEVRSDVAAEVERVQGLAEAIAALDALVSL 580
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMN---GLSPYWFDAAEGSAVHNTVDMQS---LFL 672
+ + + P + +E DG + L+++ G P + + S V N + + L +
Sbjct: 581 ATVAAQYDYCRPEM--LERDGRDGLEIDIEGGRHPV-VERTQESFVPNDARLTNDHRLAV 637
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + LL G VPA +A + D I + + D A G+S+F
Sbjct: 638 ITGPNMSGKSTYMRQVAQIVLLAQVGSFVPARAARLTPVDRIFTRVGASDDIAGGRSTFM 697
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +TH H
Sbjct: 698 VEMDELATILREADERSLVLLDEVGRGTSTADGMAIAQAITEHLHDRVGATTLFATHHHP 757
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ A + DG+ V ++ G S E A GVPET+++R+ +
Sbjct: 758 LTELADELAAAFTLHFEVDEDDGEVVFHHEIAPGAATGSYGVEVATAAGVPETVVERSRE 817
Query: 852 L 852
L
Sbjct: 818 L 818
>gi|449329992|gb|AGE96258.1| DNA mismatch repair protein of the muts family [Encephalitozoon
cuniculi]
Length = 922
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 4/191 (2%)
Query: 661 VHNTVD-MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N D + + +LTG N GGKS+LLR+IC +L G+ V + P FD I +
Sbjct: 721 VENDYDGCRRILVLTGANMGGKSTLLRTICFNVILSQVGMDVCCKRMETPLFDRIFTRIG 780
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A G+S+F +E+ E +I+ +T SLV++DE+ RGT T G CIA +++E L
Sbjct: 781 ARDDLAKGESTFMIELGETSNILRHSTRDSLVIMDELGRGTSTKDGGCIARAVLEYLKKK 840
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C + STH HGI +++ + M + V +KLV G+ +S A+
Sbjct: 841 ECHVLFSTHYHGIIG---EVEGVSNGYMSSVIKGRDIVFLYKLVAGVSGDSHGLYVARMA 897
Query: 840 GVPETIIQRAE 850
GVP+ I++RAE
Sbjct: 898 GVPDAIVERAE 908
>gi|156549300|ref|XP_001600292.1| PREDICTED: probable DNA mismatch repair protein Msh6 [Nasonia
vitripennis]
Length = 1151
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 104/197 (52%), Gaps = 8/197 (4%)
Query: 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 723
T + L +LTGPN GGKS+L+R + +++ G VPA ++ D I + + D
Sbjct: 915 TAEAAPLIILTGPNMGGKSTLMRQVGLITIMAQIGCHVPATDCNLTLVDRIFTRLGANDD 974
Query: 724 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 783
G+S+F VE+SE +I+ T SLVL+DE+ RGT T GT IA S++E L I C
Sbjct: 975 IMAGQSTFLVELSETSAILQHATKYSLVLLDELGRGTSTYDGTAIAASVVEALTKIQCRT 1034
Query: 784 IVSTHLHGIFSLPLKIKNA--AYKAMGTEYLDGQTVPT------WKLVDGICRESLAFET 835
+ STH H + KN A+ A E D + +KL +G C +S F
Sbjct: 1035 LFSTHYHTLVEDYKMNKNVTLAHMACMVESDDEDQISEENVTFLYKLSEGACPKSYGFNA 1094
Query: 836 AKREGVPETIIQRAEDL 852
A+ GVP +I +RA+ +
Sbjct: 1095 ARLAGVPASITKRAQSI 1111
>gi|295706200|ref|YP_003599275.1| DNA mismatch repair protein MutS [Bacillus megaterium DSM 319]
gi|294803859|gb|ADF40925.1| DNA mismatch repair protein MutS [Bacillus megaterium DSM 319]
Length = 885
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 9/189 (4%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D S+ L+TGPN GKS+ +R + ++L G VPA+ A +P FD + + + D
Sbjct: 596 DDSSILLITGPNMSGKSTYMRQVALTAILAQIGCFVPADEAVLPIFDQVFTRIGAADDLI 655
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ VT T SL+L+DEI RGT T G +A +IIE + ++IGC +
Sbjct: 656 SGQSTFMVEMLETKNAVTNATQSSLILLDEIGRGTSTYDGMALAQAIIEYVHEHIGCKTL 715
Query: 785 VSTHLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG 840
STH H + SLP +KN A+ +G+ V K+ DG +S A+
Sbjct: 716 FSTHYHELTVLDESLP-ALKNVHVSAVEK---NGKVVFLHKIKDGAADKSYGIHVAELAE 771
Query: 841 VPETIIQRA 849
+P+ +++RA
Sbjct: 772 LPDPLLERA 780
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLRIKAEYQDAFLFFRLGDFYEMFFEDATTASQELEITLTSRDGGGQERIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L G+ V I E+V+ P A+ R + PG+
Sbjct: 70 APTYIERLIEKGFKVAICEQVEDPKHAKGVVKREVVQVISPGT 112
>gi|296330917|ref|ZP_06873392.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674435|ref|YP_003866107.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151922|gb|EFG92796.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412679|gb|ADM37798.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 858
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +PE
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPED 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LISRAQDI 780
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|342164735|ref|YP_004769374.1| DNA mismatch repair protein MutS [Streptococcus pseudopneumoniae
IS7493]
gi|341934617|gb|AEL11514.1| DNA mismatch repair protein MutS [Streptococcus pseudopneumoniae
IS7493]
Length = 844
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQMGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + +
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHER 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVEIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|401683891|ref|ZP_10815776.1| DNA mismatch repair protein MutS [Streptococcus sp. BS35b]
gi|418975559|ref|ZP_13523463.1| DNA mismatch repair protein MutS [Streptococcus oralis SK1074]
gi|383347542|gb|EID25520.1| DNA mismatch repair protein MutS [Streptococcus oralis SK1074]
gi|400186931|gb|EJO21136.1| DNA mismatch repair protein MutS [Streptococcus sp. BS35b]
Length = 844
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLGSSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|20089412|ref|NP_615487.1| DNA mismatch repair protein MutS [Methanosarcina acetivorans C2A]
gi|44888230|sp|Q8TTB4.1|MUTS_METAC RecName: Full=DNA mismatch repair protein MutS
gi|19914310|gb|AAM03967.1| DNA mismatch repair protein [Methanosarcina acetivorans C2A]
Length = 900
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 7/214 (3%)
Query: 646 NGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV 701
+G P G V N +M L+TGPN GKS+ +R +++ G V
Sbjct: 604 DGRHPVVESTVSGGFVPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGSFV 663
Query: 702 PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTE 761
PA AS+ D + + ++D A G+S+F VEM E+ +I+ + +SLVL+DEI RGT
Sbjct: 664 PASYASVGIIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTS 723
Query: 762 TAKGTCIAGSIIETLDNIGCLGI---VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP 818
T G IA +++E L N G +GI +TH H + +L K+K + + + V
Sbjct: 724 TYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQLTALEEKLKRVKNYHIAVKEDGHELVF 783
Query: 819 TWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
K+V G S A+ GVPE +I+RA ++
Sbjct: 784 LRKIVPGATDRSYGIHVARLAGVPEKVIERANEI 817
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRP-ESIPKAGCPVVNLRQT 108
K +P ++ R+GDFYE+ G DA + + L G R E +P AG P +
Sbjct: 16 KQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRTGERMPLAGIPYHAIDTY 75
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L GY V I E+++ P +A+ R + PG+
Sbjct: 76 LPRLINKGYKVAICEQLEDPKKAKGVVKRGVVRVVTPGT 114
>gi|395791580|ref|ZP_10471036.1| DNA mismatch repair protein mutS [Bartonella alsatica IBS 382]
gi|395407883|gb|EJF74503.1| DNA mismatch repair protein mutS [Bartonella alsatica IBS 382]
Length = 914
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 2/213 (0%)
Query: 641 NCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLM 700
L+ + P+ + + S N +++LLTGPN GGKS+ LR +++ G
Sbjct: 629 QALRKQAVEPFVANNCDLSVQENH-QYPAIWLLTGPNMGGKSTFLRQNALIAIMAQMGSF 687
Query: 701 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT 760
VPA SA I D + + + D A G+S+F +EM E +I+ +SRSLV++DEI RGT
Sbjct: 688 VPATSAHIGVIDRLFSRVGASDDLARGRSTFMMEMVETATILNHASSRSLVILDEIGRGT 747
Query: 761 ETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 819
T G IA + +E L I C I++TH H + +L K+ M + +G V
Sbjct: 748 STFDGLSIAWAAVEYLHEINHCRAILATHFHEMTALADKLNRLHNVTMKVKNWNGDVVFL 807
Query: 820 WKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
++ G S + AK G+PE +I RA D+
Sbjct: 808 HEVTKGAADRSYGVQVAKLAGLPEAVITRATDV 840
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFSDAIEAAQALGITLTTRGKHLGEDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+ + P +A+ R S+ I
Sbjct: 92 ADDYLQKLISRGYRVAVCEQTEDPAEAKKRGSKSI 126
>gi|390631118|ref|ZP_10259085.1| DNA mismatch repair protein mutS [Weissella confusa LBAE C39-2]
gi|390483678|emb|CCF31433.1| DNA mismatch repair protein mutS [Weissella confusa LBAE C39-2]
Length = 877
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 6/246 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N V M +++ L+TGPN GKS+ +R + ++ G VPA A +P FD I
Sbjct: 588 SYVANDVYMDEDETIMLITGPNMSGKSTYMRQLALTVVMAQIGSYVPASEAELPIFDQIF 647
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G S+F VEM+E + + T RSL+L DE+ RGT T G +A +IIE
Sbjct: 648 TRIGAADDLISGNSTFMVEMAEANTALQNATKRSLILFDELGRGTATYDGMALAQAIIEY 707
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ +N + STH H + +L ++ + +G +G+ V + K++ G +S
Sbjct: 708 VHNNTKAKTLFSTHYHELTALSDELDHLRNVHVGATEENGELVFSHKVLTGPADQSYGIN 767
Query: 835 TAKREGVPETIIQRAEDLYIACGVNCVMIAAR-EQPPP-SIIGASCVYVMLRPDKKLYIG 892
AK G+P+++I RA D+ + V I+ QP P S A V V + P+ + +
Sbjct: 768 VAKLAGLPDSLIARASDILASLEAQDVTISETLVQPQPVSAKLAEPVAVPVAPEPEPVVE 827
Query: 893 QTDDLD 898
+ LD
Sbjct: 828 EDTQLD 833
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIP 96
KE + + + K+++P L R+GDFYE DA + L+E L E IP
Sbjct: 5 KETPMMKQYNEIKAQYPDAFLFYRLGDFYELFNDDAVLGSQLLELT-LTQRNKNSAEPIP 63
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
AG P + +D L GY V +VE+++ P +A R + PG+
Sbjct: 64 MAGVPHHAAQNYIDILVDKGYKVAVVEQMENPAEAEGMVRREVVQLVTPGT 114
>gi|125563676|gb|EAZ09056.1| hypothetical protein OsI_31317 [Oryza sativa Indica Group]
Length = 1265
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 12/205 (5%)
Query: 658 GSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
GS V N + M S +LTGPN GGKS+LLR +C +L G VPAES + D
Sbjct: 994 GSFVPNDIKMGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVD 1053
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
+ + M + D G+S+F VE+ E S++++ T SLV +DE+ RGT T+ G IA S+
Sbjct: 1054 RMFVRMGARDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASV 1113
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-----QTVPTWKLVDGI 826
+E L + CLG+ STH H + + K + M E G + +KL G
Sbjct: 1114 LEYLVHRVQCLGLFSTHYHRL-AAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGS 1172
Query: 827 CRESLAFETAKREGVPETIIQRAED 851
C +S A+ G+P +++QRA +
Sbjct: 1173 CPKSYGVNVARLAGIPASVLQRANE 1197
>gi|448712106|ref|ZP_21701649.1| DNA mismatch repair protein MutS [Halobiforma nitratireducens JCM
10879]
gi|445791191|gb|EMA41840.1| DNA mismatch repair protein MutS [Halobiforma nitratireducens JCM
10879]
Length = 920
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 102/189 (53%), Gaps = 1/189 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
D Q L ++TGPN GKS+ +R + LL G VPA+SA + D I + + D
Sbjct: 658 TDGQRLAVITGPNMSGKSTYMRQVAQIVLLSQVGSFVPAKSARLTPVDRIFTRVGASDDI 717
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG 783
A G+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G
Sbjct: 718 AGGRSTFMVEMDELATILREADERSLVLLDEVGRGTSTADGLAIAQAITEHLHDEVGATT 777
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+ +TH H + + ++ +A + DG+ V ++ G S E A GVPE
Sbjct: 778 LFATHHHPLTEVTEQLADAFTLHFEVDQADGEVVFRHEVAPGAATGSYGVEVATAAGVPE 837
Query: 844 TIIQRAEDL 852
+++R+ +L
Sbjct: 838 PVVERSREL 846
>gi|19074680|ref|NP_586186.1| DNA MISMATCH REPAIR PROTEIN OF THE MUTS FAMILY [Encephalitozoon
cuniculi GB-M1]
gi|19069322|emb|CAD25790.1| DNA MISMATCH REPAIR PROTEIN OF THE MUTS FAMILY [Encephalitozoon
cuniculi GB-M1]
Length = 922
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 4/191 (2%)
Query: 661 VHNTVD-MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N D + + +LTG N GGKS+LLR+IC +L G+ V + P FD I +
Sbjct: 721 VENDYDGCRRILVLTGANMGGKSTLLRTICFNVILSQVGMDVCCKRMETPLFDRIFTRIG 780
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A G+S+F +E+ E +I+ +T SLV++DE+ RGT T G CIA +++E L
Sbjct: 781 ARDDLAKGESTFMIELGETSNILRHSTRDSLVIMDELGRGTSTKDGGCIARAVLEYLKKK 840
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C + STH HGI +++ + M + V +KLV G+ +S A+
Sbjct: 841 ECHVLFSTHYHGIIG---EVEGVSNGYMSSVIKGRDIVFLYKLVAGVSGDSHGLYVARMA 897
Query: 840 GVPETIIQRAE 850
GVP+ I++RAE
Sbjct: 898 GVPDAIVERAE 908
>gi|384045296|ref|YP_005493313.1| Mismatch repair ATPase (MutS family) [Bacillus megaterium WSH-002]
gi|345442987|gb|AEN88004.1| Mismatch repair ATPase (MutS family) [Bacillus megaterium WSH-002]
Length = 885
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 9/189 (4%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D S+ L+TGPN GKS+ +R + ++L G VPA+ A +P FD + + + D
Sbjct: 596 DDSSILLITGPNMSGKSTYMRQVALTAILAQIGCFVPADEAVLPIFDQVFTRIGAADDLI 655
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ VT T SL+L+DEI RGT T G +A +IIE + ++IGC +
Sbjct: 656 SGQSTFMVEMLETKNAVTNATQSSLILLDEIGRGTSTYDGMALAQAIIEYVHEHIGCKTL 715
Query: 785 VSTHLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG 840
STH H + SLP +KN A+ +G+ V K+ DG +S A+
Sbjct: 716 FSTHYHELTVLDESLP-ALKNVHVSAVEK---NGKVVFLHKIKDGAADKSYGIHVAELAE 771
Query: 841 VPETIIQRA 849
+P+ +++RA
Sbjct: 772 LPDPLLERA 780
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLRIKAEYQDAFLFFRLGDFYEMFFEDATTASQELEITLTSRDGGGQERIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L G+ V I E+V+ P A+ R + PG+
Sbjct: 70 APTYIERLIEKGFKVAICEQVEDPKHAKGVVKREVVQVISPGT 112
>gi|417939187|ref|ZP_12582480.1| DNA mismatch repair protein MutS [Streptococcus infantis SK970]
gi|343390632|gb|EGV03212.1| DNA mismatch repair protein MutS [Streptococcus infantis SK970]
Length = 843
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 4/194 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPA+SAS+P FDAI +
Sbjct: 587 NSIQMDEATSIQLITGPNMSGKSTYMRQLAITAVMAQMGSYVPADSASLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL + +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLEISLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P +++RA+ +
Sbjct: 767 AGLPVDLLKRADTI 780
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLVERGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|328866866|gb|EGG15249.1| mutS like protein [Dictyostelium fasciculatum]
Length = 1062
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 103/183 (56%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L L+TGPN GGKS+ +R +++ G VPA+SA I D++ + S D A+ +S
Sbjct: 862 LILITGPNMGGKSTFIRQNALITIMAQMGCFVPADSAEIGISDSVFSRVGSSDDLANDRS 921
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789
+F VEM E SI+ TSRSLV++DE+ RGT T G IA ++IE L + +TH
Sbjct: 922 TFMVEMVETASILKKATSRSLVIMDEVGRGTSTLDGAAIARAVIEHLYANKTRTLFATHH 981
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + SL + N A+ + D + T K++ GI +S A+ GVP ++IQR+
Sbjct: 982 HELTSLASHMPNIQCYALAVKEEDDDLLFTHKVMPGISNKSYGIFCARLAGVPLSVIQRS 1041
Query: 850 EDL 852
+ +
Sbjct: 1042 QQI 1044
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 32 VNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVE--YAGLNPFGG 89
++ K LK + FK +P +LL R+GDFYE DA + + L G
Sbjct: 201 IDTKYKQLKVTPAMQQYYHFKKLYPSHILLFRIGDFYEMFNDDAITVSSLLHITLTSRGI 260
Query: 90 LRPES-IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKS 136
S IP G P + ++ L R+G +V + ++V+ Q++S+ S
Sbjct: 261 KNTTSEIPMCGFPYHSADNYIEKLIRHGKTVAVCDQVES-VQSKSKGS 307
>gi|398304583|ref|ZP_10508169.1| DNA mismatch repair protein MutS [Bacillus vallismortis DV1-F-3]
Length = 858
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 1/190 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATENSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQMKEGAADKSYGIHVAQLAELPKD 772
Query: 845 IIQRAEDLYI 854
+I RA+D+ I
Sbjct: 773 LISRAQDILI 782
Score = 43.1 bits (100), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|386758427|ref|YP_006231643.1| DNA mismatch repair protein MutS [Bacillus sp. JS]
gi|384931709|gb|AFI28387.1| DNA mismatch repair protein MutS [Bacillus sp. JS]
Length = 863
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +PE
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPED 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LIARAQDI 780
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGGAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|373465659|ref|ZP_09557113.1| DNA mismatch repair protein MutS [Lactobacillus kisonensis F0435]
gi|371759776|gb|EHO48486.1| DNA mismatch repair protein MutS [Lactobacillus kisonensis F0435]
Length = 660
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 151/322 (46%), Gaps = 26/322 (8%)
Query: 546 KPAVDSKGRK---VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINIL 602
K VD RK E FST +++E EA ++KA +L + +++ I +
Sbjct: 268 KVPVDRYQRKQTLANAERFSTPELKEKEALILEAQEQSKALEYKLFVKIREDIKKTIKRI 327
Query: 603 VFASMLLVIGKAL--FAHVSEGRRRKWVFPALKDIE----LDGANCL--KMNGLSPYWFD 654
+ + L FA VSE R +V P L + DG + + K+ G Y
Sbjct: 328 QDLADAIASVDVLQSFAAVSEEYR--FVRPTLTNQHEVAVKDGRHPVVEKVLGHQQY--- 382
Query: 655 AAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF 711
V N V+M S+ L+TGPN GKS+ +R + A ++ G VPA+ A +P F
Sbjct: 383 ------VPNDVEMGSDTSVLLITGPNMSGKSTYMRQMALAVIMNQMGCFVPAKKAKLPVF 436
Query: 712 DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGS 771
D I + + D G+S+F VEM E + T SL+L DEI RGT T G +A +
Sbjct: 437 DKIFTRIGAADDLISGQSTFMVEMKEANDAIENATPNSLILFDEIGRGTATYDGMALAQA 496
Query: 772 IIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
IIE + +NIG + STH H + +L + +G +G+ V K+ G +S
Sbjct: 497 IIEYVHNNIGAKTLFSTHYHELTTLDESLNQLQNVHVGATESNGELVFLHKIQPGPADKS 556
Query: 831 LAFETAKREGVPETIIQRAEDL 852
AK G+P ++ RA D+
Sbjct: 557 YGIHVAKLAGLPNNLLSRANDI 578
>gi|294500854|ref|YP_003564554.1| DNA mismatch repair protein MutS [Bacillus megaterium QM B1551]
gi|294350791|gb|ADE71120.1| DNA mismatch repair protein MutS [Bacillus megaterium QM B1551]
Length = 891
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 9/189 (4%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D S+ L+TGPN GKS+ +R + ++L G VPA+ A +P FD + + + D
Sbjct: 602 DDSSILLITGPNMSGKSTYMRQVALTAILAQIGCFVPADEAVLPIFDQVFTRIGAADDLI 661
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ VT T SL+L+DEI RGT T G +A +IIE + ++IGC +
Sbjct: 662 SGQSTFMVEMLETKNAVTNATQSSLILLDEIGRGTSTYDGMALAQAIIEYVHEHIGCKTL 721
Query: 785 VSTHLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG 840
STH H + SLP +KN A+ +G+ V K+ DG +S A+
Sbjct: 722 FSTHYHELTVLDESLP-ALKNVHVSAVEK---NGKVVFLHKIKDGAADKSYGIHVAELAE 777
Query: 841 VPETIIQRA 849
+P+ +++RA
Sbjct: 778 LPDPLLERA 786
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 16 QYLRIKAEYQDAFLFFRLGDFYEMFFEDATTASQELEITLTSRDGGGQERIPMCGVPYHS 75
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L G+ V I E+V+ P A+ R + PG+
Sbjct: 76 APTYIERLIEKGFKVAICEQVEDPKHAKGVVKREVVQVISPGT 118
>gi|448385404|ref|ZP_21563910.1| DNA mismatch repair protein MutS [Haloterrigena thermotolerans DSM
11522]
gi|445656899|gb|ELZ09731.1| DNA mismatch repair protein MutS [Haloterrigena thermotolerans DSM
11522]
Length = 910
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
D + L ++TGPN GKS+ +R + LL G VPA +A + D I + + D
Sbjct: 649 TDDRRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPASAARLTPVDRIFTRVGASDDI 708
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG 783
A G+S+F VEM E+ +I+ SLVL+DE+ RGT TA G IA +I E L D +G
Sbjct: 709 AGGRSTFMVEMDELATILREADEDSLVLLDEVGRGTSTADGMAIAQAITEHLHDRVGATT 768
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+ +TH H + L + A E +DG+ V ++ G S E A GVP+
Sbjct: 769 LFATHHHPLTELADDLTAAFTLHFEVEQVDGEVVFHHEIAPGAATGSYGVEVATAAGVPD 828
Query: 844 TIIQRAEDLYIACGVNC 860
+++ RA DL A +
Sbjct: 829 SVVDRARDLVAAADADT 845
>gi|365853736|ref|ZP_09394001.1| DNA mismatch repair protein MutS [Lactobacillus parafarraginis
F0439]
gi|363711894|gb|EHL95600.1| DNA mismatch repair protein MutS [Lactobacillus parafarraginis
F0439]
Length = 865
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 148/310 (47%), Gaps = 31/310 (10%)
Query: 559 EWFST--LKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKA-- 614
E FST LK +EAL A+ ++KVLE ++ Q K +I ++ +
Sbjct: 484 ERFSTPELKEKEALI----LEAQEQSKVLEYQLFVNVRDQIKASIKQIQALADAVASVDV 539
Query: 615 --LFAHVSEGRRRKWVFPAL----KDIELDGANCL--KMNGLSPYWFDAAEGSAVHNTVD 666
FA VSE R +V P L K DG + + K+ G Y V N VD
Sbjct: 540 LQSFASVSEEYR--FVKPKLTTQHKIAIKDGRHPVVEKVLGHQQY---------VPNDVD 588
Query: 667 M---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 723
M S+ L+TGPN GKS+ +R + ++ G VPA+SA++P FD I + + D
Sbjct: 589 MGSDTSVLLITGPNMSGKSTYMRQVALGVIMNQMGCFVPAKSATLPVFDKIFTRIGAADD 648
Query: 724 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 782
G+S+F VEM E + T SL+L DEI RGT T G +A +IIE + +NIG
Sbjct: 649 LISGQSTFMVEMKEANDAIENATPNSLILFDEIGRGTATYDGMALAQAIIEYVHNNIGAK 708
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ STH H + SL + +G +G+ V K+ G +S AK G+P
Sbjct: 709 TLFSTHYHELTSLDETLNRLQNVHVGATESNGELVFLHKIQPGPADKSYGIHVAKLAGLP 768
Query: 843 ETIIQRAEDL 852
++ RA +
Sbjct: 769 NGLLNRANQI 778
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 48 MLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR-PES-IPKAGCPV 102
M+Q+ K ++P L R+GDFYE DA + L R PE+ +P G P
Sbjct: 2 MVQYQKIKDQYPDAFLFYRLGDFYEMFNDDAIKGSQLLELTLTNRSRNPENPVPMCGVPH 61
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ +D L GY V I E+++ P + R + PG+ G
Sbjct: 62 KAVQNYIDILVDQGYKVAICEQMEDPRLTKGMVKREVIQLVTPGTQIDVG 111
>gi|430758875|ref|YP_007209596.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430023395|gb|AGA24001.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 858
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +PE
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPED 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LIARAQDI 780
Score = 42.7 bits (99), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|154249929|ref|YP_001410754.1| DNA mismatch repair protein MutS [Fervidobacterium nodosum Rt17-B1]
gi|189030718|sp|A7HMG4.1|MUTS_FERNB RecName: Full=DNA mismatch repair protein MutS
gi|154153865|gb|ABS61097.1| DNA mismatch repair protein MutS [Fervidobacterium nodosum Rt17-B1]
Length = 823
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 159/310 (51%), Gaps = 28/310 (9%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLE--LLRGLSSELQTKINIL-VFASMLLVIG 612
V E ++T +++E ++ AK K ++LE + + + EL+ L A ML I
Sbjct: 489 VNAERYTTTELKEFEQKI--LAAKEKVEILEKTIFKQICDELKGYTQDLRKLAEMLSWID 546
Query: 613 -KALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPY---WFDAAEGSAVHNTVDMQ 668
+ FA+VS + + P + D E +NG P + D + ++ + +++
Sbjct: 547 VYSNFAYVS--KLYSYSKPEISDSEFKV-----LNGRHPVVERFVDEFVPNDIYMSDELR 599
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+++LTGPN GKS+ +R + +L+ G VPA+ A +P FD I M + D + GK
Sbjct: 600 -MYILTGPNMSGKSTYIRQVGLIALMTQIGCFVPAQYAKVPVFDRIFTRMGARDDISTGK 658
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVST 787
S+F EM+E+ I++ T +SLVL+DE+ RGT T G IA ++ E + N I C I +T
Sbjct: 659 STFLTEMNEVALILSKATQKSLVLLDEVGRGTSTFDGISIAWAMSEYIYNEIKCKTIFAT 718
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT-----WKLVDGICRESLAFETAKREGVP 842
H + L + Y + +D + P K+V+G+ S E A G+P
Sbjct: 719 HFTELTEL-----SEGYSGIKNLTVDVKETPDGVVFLHKVVEGVADRSYGIEVAAIAGLP 773
Query: 843 ETIIQRAEDL 852
E+II+RA+++
Sbjct: 774 ESIIERAKEI 783
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 38 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 97
+LK + + L K K+ +LL R+GDFYEA DA + + LN R ++ P
Sbjct: 10 NLKITPMMKQYLDIKDKYKDSILLFRLGDFYEAFFDDALTVSKI--LNIVLTKRQDA-PM 66
Query: 98 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
AG P L L L GY V I E+++ P A+ R ++ PG+
Sbjct: 67 AGIPYHALDNYLKKLVDAGYKVAICEQMEDPALAKGIVKREVTRVITPGT 116
>gi|354594395|ref|ZP_09012434.1| DNA mismatch repair protein MutS [Commensalibacter intestini A911]
gi|353672071|gb|EHD13771.1| DNA mismatch repair protein MutS [Commensalibacter intestini A911]
Length = 873
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 134/294 (45%), Gaps = 3/294 (1%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T+++ E + EA A K +L L + + + + A + +I L + +
Sbjct: 513 FTTIELNELSGKILEANTLAAEKEKQLFTELIHKTLQESTLPLLAKSIAII-DVLQSCAT 571
Query: 621 EGRRRKWVFPAL-KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGG 679
+ W P L D + NC + N + LLTGPN
Sbjct: 572 LYSKHHWCIPTLTDDTSFELINCRHPVVEAALQHKTTFTPNSCNLSKNNKIMLLTGPNMA 631
Query: 680 GKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739
GKS+ LR + + +L GL VPA A I D + + + D A G+S+F VEM+E
Sbjct: 632 GKSTFLRQVALSVILAQAGLPVPASEAKIGIVDHLFSRVGASDDLAHGRSTFMVEMTESA 691
Query: 740 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 798
SI+ RSLV+IDEI RGT T G IA S++ETL N I C I +TH H +
Sbjct: 692 SILNQAGPRSLVVIDEIGRGTSTLDGMAIAWSMLETLHNTIQCRTIFATHFHELVQSTQH 751
Query: 799 IKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+K+ M + G + ++++ G S A+ GVP ++RA+ L
Sbjct: 752 LKSCKPFTMKVQEWKGSIIFQYEVIPGAAEHSWGIHVAQLAGVPLPTLKRAQQL 805
>gi|421489405|ref|ZP_15936787.1| DNA mismatch repair protein MutS [Streptococcus oralis SK304]
gi|400366037|gb|EJP19079.1| DNA mismatch repair protein MutS [Streptococcus oralis SK304]
Length = 844
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAITAVMAQIGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLGSSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|449947081|ref|ZP_21807192.1| DNA mismatch repair protein MutS [Streptococcus mutans 11SSST2]
gi|449169045|gb|EMB71834.1| DNA mismatch repair protein MutS [Streptococcus mutans 11SSST2]
Length = 849
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L K+ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTKLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|384175445|ref|YP_005556830.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349594669|gb|AEP90856.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 858
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +PE
Sbjct: 713 FSTHYHELTVLEDKLPQLKNIHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPED 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LIARAQDI 780
Score = 42.7 bits (99), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|310642433|ref|YP_003947191.1| DNA mismatch repair protein muts [Paenibacillus polymyxa SC2]
gi|386041503|ref|YP_005960457.1| DNA mismatch repair protein mutS [Paenibacillus polymyxa M1]
gi|309247383|gb|ADO56950.1| DNA mismatch repair protein MutS [Paenibacillus polymyxa SC2]
gi|343097541|emb|CCC85750.1| DNA mismatch repair protein mutS [Paenibacillus polymyxa M1]
Length = 966
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
G +NTV ++ + L+TGPN GKS+ +R + +++ G VPA A +P D I
Sbjct: 618 GFIANNTVLEEADAHILLITGPNMAGKSTYMRQVALIAIMAQIGCFVPAARAKVPMLDRI 677
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEM++I+ + T RSL++IDE+ RGT T++G IA ++IE
Sbjct: 678 FTRIGAADDLIGGQSTFMVEMADIQVMTDKATPRSLIIIDELGRGTSTSEGMAIAQAVIE 737
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ D IGC +VSTH H + L + + +M + + KL+ G S
Sbjct: 738 FVHDTIGCKALVSTHFHELAHLEQGLTSLRNYSMAVQESGDKVNFLRKLIPGAASSSYGI 797
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P II+RA L
Sbjct: 798 YCARLAGLPNNIIERANGL 816
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLR 91
L NG K + + L K + L R+GDFYE DA + + + G G
Sbjct: 24 LGNGMSKYTPMIEQYLSIKEQAKDAFLFFRLGDFYEMFFDDAILASKELEITLTGREGGA 83
Query: 92 PESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
E IP G P + + L GY V I E+++ + + R I PG+
Sbjct: 84 AEKIPMCGVPYHSAENYIQRLIEKGYKVAICEQMEEASATKGMVRRDIVRVVTPGT 139
>gi|188995905|ref|YP_001930157.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis ATCC
33277]
gi|188595585|dbj|BAG34560.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis ATCC
33277]
Length = 882
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 150/320 (46%), Gaps = 28/320 (8%)
Query: 555 KVGEEWFSTLKVEEALERY-------HEA---GAKAKAKVLE--LLRGLSSELQTKINIL 602
KV EW + A ERY +EA GA+ K LE L L +ELQ + L
Sbjct: 475 KVPAEWIRKQTLVSA-ERYITEELKEYEAKILGAEEKIAALEGQLYALLVAELQRYVAPL 533
Query: 603 VFASMLLVIGKALFAHVSEGRRRKWVFPALKD---IELDGANC----LKMNGLSPYWFDA 655
S + L + RR +++ P + + I++ ++ PY
Sbjct: 534 QQDSQAVASLDCLLSFAESARRYRFICPVVDESFTIDIKAGRHPVIEQQLPADEPYI--- 590
Query: 656 AEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
+ ++ D Q + ++TGPN GKS+LLR SL+ G VPAESA I D+I
Sbjct: 591 --ANDIYLDTDRQQVIIVTGPNMSGKSALLRQTALISLMAQIGSFVPAESARIGMVDSIF 648
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D+ + G+S+F VEM E +I+ T RSLVL DE+ RGT T G IA SI+E
Sbjct: 649 TRVGASDNISMGESTFMVEMQEASNILNNLTPRSLVLFDELGRGTSTYDGISIAWSIVEY 708
Query: 776 L-DNIGC--LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
+ DN + +TH H + L ++ + +DG+ + KL G S
Sbjct: 709 IHDNPKAHPRTLFATHYHELNELEGQLDRVHNFNVSAREVDGKMLFLRKLEPGGSAHSFG 768
Query: 833 FETAKREGVPETIIQRAEDL 852
+ A+ G+P I+QRA D+
Sbjct: 769 IQVARLGGMPHHIVQRATDI 788
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ Q K K P +LL RVGDFYE DA + E G L + + AG P
Sbjct: 4 QYFQIKQKHPDAILLFRVGDFYETFSEDAIVASEILGITLTRRANGAAQFVELAGFPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + ++ R I+ PG
Sbjct: 64 LDTYLPKLVRAGKRVAICDQLEDPKKTKTLVKRGITELVTPG 105
>gi|448306259|ref|ZP_21496168.1| DNA mismatch repair protein MutS [Natronorubrum bangense JCM 10635]
gi|445598673|gb|ELY52728.1| DNA mismatch repair protein MutS [Natronorubrum bangense JCM 10635]
Length = 917
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 1/194 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
D Q L ++TGPN GKS+ +R + LL G VPA++A + D I + + D
Sbjct: 661 TDDQRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAKAARLTPVDRIFTRVGASDDI 720
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG 783
A G+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E + D +G
Sbjct: 721 AGGRSTFMVEMDELATILREADERSLVLLDEVGRGTSTADGLAIAQAITEHIHDAVGATT 780
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+ +TH H + L ++ A E DG+ V ++ G S E A GVPE
Sbjct: 781 LFATHHHPLTELTADLEAAFTLHFEVEQDDGKVVFHHEIAPGAATGSYGVEVATAAGVPE 840
Query: 844 TIIQRAEDLYIACG 857
+++R+ +L A
Sbjct: 841 AVVERSRELVSAAA 854
>gi|417916532|ref|ZP_12560109.1| DNA mismatch repair protein MutS [Streptococcus mitis bv. 2 str.
SK95]
gi|342829423|gb|EGU63777.1| DNA mismatch repair protein MutS [Streptococcus mitis bv. 2 str.
SK95]
Length = 844
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|336477855|ref|YP_004616996.1| DNA mismatch repair protein MutS [Methanosalsum zhilinae DSM 4017]
gi|335931236|gb|AEH61777.1| DNA mismatch repair protein MutS [Methanosalsum zhilinae DSM 4017]
Length = 881
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 19/296 (6%)
Query: 570 LERYHEAGAKAKAKVLELLRGLSSELQTKINILV--FASMLLVIGKA-LFAHVSE-GRRR 625
L+++ EA A K+ L L SE+ +KI+ VIGK + ++++E R
Sbjct: 516 LKKWEEAIISADEKITTLEYELFSEINSKISDYSKQLQKTADVIGKMDVLSNLAEIAVNR 575
Query: 626 KWVFPALKDIELDGANC--LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGG 679
+ PA+ A+C L +G P + G V N +M L+TGPN
Sbjct: 576 NYTRPAVT------ADCRILVRDGRHPVVESSVPGGFVPNDTEMDCSKNQFALITGPNMA 629
Query: 680 GKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739
GKS+ +R + ++ G VPA ASI D I + ++D A G+S+F VEM E+
Sbjct: 630 GKSTYMRQVALIVIMAQAGSFVPASHASIGLVDRIFTRVGAFDDLASGQSTFMVEMVELA 689
Query: 740 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGIVSTHLHGIFSLP 796
+I+ T +SL+L+DEI RGT T G IA +++E + D G + +TH H + L
Sbjct: 690 NILNNATPKSLILLDEIGRGTSTYDGYSIAKAVVEYIHNKDRAGVRSMFATHYHQLTDLS 749
Query: 797 LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+++ + V K++ G +S A+ GVP + QRA+++
Sbjct: 750 ERLERVNNYHIAVREEGDDLVFLRKIIPGATDKSYGIHVARLAGVPRRVTQRAKEI 805
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ QFK ++ ++ R+GDFYE DA + ++ + G E +P AG P
Sbjct: 10 QYYQFKKEYSDCIIFFRMGDFYETFDQDAKTVSRELDITLTSRGKGKSGEKMPLAGIPYH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L L + GY V I E+++ P +A+ R + PG+
Sbjct: 70 SIDNYLPRLIKKGYKVAICEQLEDPKKAKGVVKRGVVRVVTPGT 113
>gi|389843763|ref|YP_006345843.1| DNA mismatch repair protein MutS [Mesotoga prima MesG1.Ag.4.2]
gi|387858509|gb|AFK06600.1| DNA mismatch repair protein MutS [Mesotoga prima MesG1.Ag.4.2]
Length = 820
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Query: 663 NTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N + M S F++TGPN GKS+ +R + S++ G +PA+ A +P +D + +
Sbjct: 586 NDISMDSSENFFIVTGPNMSGKSTFIRQVALLSIMAQMGSFIPAKDAMLPIYDRVFTRIG 645
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D A GKS+F VEM E +I++ T SLV++DE+ RGT T G IA ++ E + +
Sbjct: 646 ARDELASGKSTFLVEMMETATILSKATEDSLVILDEVGRGTSTFDGISIAWAVSEFIYEA 705
Query: 779 IGCLGIVSTH---LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
IGC I +TH L + S+ IKN + + TE + K+++G+ S E
Sbjct: 706 IGCHTIFATHFTELTELSSMYPGIKNKTARIVETE---KGIIFLHKVINGVANSSHGIEV 762
Query: 836 AKREGVPETIIQRAEDL 852
AK GVPET++ RA+++
Sbjct: 763 AKLAGVPETVLSRAKEI 779
>gi|430001963|emb|CCF17743.1| DNA mismatch repair protein mutS [Rhizobium sp.]
Length = 911
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 9/206 (4%)
Query: 656 AEGSAVHNTVDMQ--------SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707
+EG + N D+ +++LLTGPN GGKS+ LR ++L G VPA SA
Sbjct: 635 SEGPFIANDCDLSPSQDGEFGAVWLLTGPNMGGKSTFLRQNALIAILAQMGSFVPASSAH 694
Query: 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTC 767
I D + + + D A G+S+F VEM E +I+ T RSLV++DEI RGT T G
Sbjct: 695 IGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLS 754
Query: 768 IAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGI 826
IA + +E L I C G+ +TH H + L K+ + M + DG+ V ++ G
Sbjct: 755 IAWAAVEHLHEINRCRGLFATHFHELTVLSEKLNRLSNATMRVKEWDGEVVFLHEVGAGA 814
Query: 827 CRESLAFETAKREGVPETIIQRAEDL 852
S + A+ G+P +++ RA D+
Sbjct: 815 ADRSYGIQVARLAGLPASVVARARDV 840
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + IP G P+
Sbjct: 32 QYIEIKANNPDSLLFYRMGDFYELFFEDAVEASRALGITLTRRGQHMGQDIPMCGVPIHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L G+ V + E+V+ P +A+ R S+ +
Sbjct: 92 ADDYLQKLISLGFRVAVCEQVEDPAEAKKRGSKSV 126
>gi|418411715|ref|ZP_12984981.1| DNA mismatch repair protein mutS [Staphylococcus epidermidis
BVS058A4]
gi|420167653|ref|ZP_14674305.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM087]
gi|394237681|gb|EJD83167.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM087]
gi|410891298|gb|EKS39095.1| DNA mismatch repair protein mutS [Staphylococcus epidermidis
BVS058A4]
Length = 873
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 124/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + +G+T++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDVGRTEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIVTPGT--VMDQNGMD 120
>gi|448390488|ref|ZP_21566111.1| DNA mismatch repair protein MutS [Haloterrigena salina JCM 13891]
gi|445666902|gb|ELZ19554.1| DNA mismatch repair protein MutS [Haloterrigena salina JCM 13891]
Length = 891
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 123/270 (45%), Gaps = 8/270 (2%)
Query: 586 ELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL-KDIELDGANCLK 644
EL L E+ + +L L AL + + +WV P L +D LD
Sbjct: 529 ELFEELREEVAARAELLQDVGRALATVDALASLATHAAENRWVQPELHRDDRLD-----V 583
Query: 645 MNGLSPYWFDAAEGSAVHNTVDMQSLFLL-TGPNGGGKSSLLRSICAASLLGICGLMVPA 703
G P E +D + FL+ TGPN GKS+ +R + LL G VPA
Sbjct: 584 EQGRHPVVEQTTEFVPNDVRLDEERGFLVVTGPNMSGKSTYMRQVAGIVLLAQIGSFVPA 643
Query: 704 ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETA 763
ESA I D I + + D A G+S+F VEMSE+ +I+ T SLV++DE+ RGT T
Sbjct: 644 ESAEIGLVDGIFTRVGALDELAQGRSTFMVEMSELSNILHTATEESLVILDEVGRGTATY 703
Query: 764 KGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKL 822
G IA + E L N + + +TH H + L K+ A + + DG +
Sbjct: 704 DGISIAWAATEYLHNEVQAKTLFATHYHELTGLAEKLPRVANVHVAADERDGDVTFLRTV 763
Query: 823 VDGICRESLAFETAKREGVPETIIQRAEDL 852
DG S A GVP+ +++R+ D+
Sbjct: 764 RDGPTDRSYGIHVADLAGVPDPVVERSRDV 793
>gi|334146183|ref|YP_004509110.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis TDC60]
gi|333803337|dbj|BAK24544.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis TDC60]
Length = 881
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 150/320 (46%), Gaps = 28/320 (8%)
Query: 555 KVGEEWFSTLKVEEALERY-------HEA---GAKAKAKVLE--LLRGLSSELQTKINIL 602
KV EW + A ERY +EA GA+ K LE L L +ELQ + L
Sbjct: 474 KVPAEWIRKQTLVSA-ERYITEELKEYEAKILGAEEKIAALEGQLYALLVAELQRYVAPL 532
Query: 603 VFASMLLVIGKALFAHVSEGRRRKWVFPALKD---IELDGANC----LKMNGLSPYWFDA 655
S + L + RR +++ P + + I++ ++ PY
Sbjct: 533 QQDSQAVASLDCLLSFAESARRYRFICPVVDESFTIDIKAGRHPVIEQQLPADEPYI--- 589
Query: 656 AEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
+ ++ D Q + ++TGPN GKS+LLR SL+ G VPAESA I D+I
Sbjct: 590 --ANDIYLDTDRQQVIIVTGPNMSGKSALLRQTALISLMAQIGSFVPAESARIGMVDSIF 647
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D+ + G+S+F VEM E +I+ T RSLVL DE+ RGT T G IA SI+E
Sbjct: 648 TRVGASDNISMGESTFMVEMQEASNILNNLTPRSLVLFDELGRGTSTYDGISIAWSIVEY 707
Query: 776 L-DNIGC--LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
+ DN + +TH H + L ++ + +DG+ + KL G S
Sbjct: 708 IHDNPKAHPRTLFATHYHELNELEGQLDRVHNFNVSAREVDGKMLFLRKLEPGGSAHSFG 767
Query: 833 FETAKREGVPETIIQRAEDL 852
+ A+ G+P I+QRA D+
Sbjct: 768 IQVARLGGMPHHIVQRATDI 787
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ Q K K P +LL RVGDFYE DA + E G L + + AG P
Sbjct: 3 QYFQIKQKHPDAILLFRVGDFYETFSEDAIVASEILGITLTRRANGAAQFVELAGFPHHA 62
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + ++ R I+ PG
Sbjct: 63 LDTYLPKLVRAGKRVAICDQLEDPKKTKTLVKRGITELVTPG 104
>gi|7387928|sp|Q9ZIX6.1|MUTS_THECA RecName: Full=DNA mismatch repair protein MutS
gi|4102012|gb|AAD01407.1| mismatch repair protein [Thermus caldophilus]
Length = 817
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 105/201 (52%), Gaps = 5/201 (2%)
Query: 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L +TGPN GKS+ LR +LL G VPAE A +P FD I +
Sbjct: 574 VPNDLEMAHELVRVTGPNMAGKSTFLRQTALIALLAQIGSFVPAEEAELPLFDGIYTRIG 633
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A GKS+F VEM E+ ++ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 634 ASDDLAGGKSTFMVEMEEVALVLKEATERSLVLLDEVGRGTSSLDGVAIATALAEALHER 693
Query: 780 GCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
C + +TH + +L L ++KN A E G V +++ G +S E A+
Sbjct: 694 RCYTLFATHYFELTALALPRLKNLHVAAKEEE---GGLVFYHQVLPGPASKSYGVEVAEM 750
Query: 839 EGVPETIIQRAEDLYIACGVN 859
G+P+ +++RA L A
Sbjct: 751 AGLPKEVVERARALLSAMAAR 771
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 21 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPI 80
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L R G+ + + ++V+ +A R ++ PG+
Sbjct: 81 RAFDAYAERLLRMGFGLAVADQVEPAEEAEGLVRREVTQLLTPGT 125
>gi|189502159|ref|YP_001957876.1| DNA mismatch repair protein MutS [Candidatus Amoebophilus asiaticus
5a2]
gi|189497600|gb|ACE06147.1| hypothetical protein Aasi_0767 [Candidatus Amoebophilus asiaticus
5a2]
Length = 863
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 147/305 (48%), Gaps = 27/305 (8%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL------FAHV 619
V E L+ Y E +A++K+LE+ + L +L + L F +L K L
Sbjct: 500 VTEELKTYEEKILQAESKMLEIEQRLYQQLLD--SALEFVPQILQNAKILAQIDCYLTFA 557
Query: 620 SEGRRRKWVFPALKDIELDGANCLKM---NGLSPYWFD--AAEGSAVHNTV----DMQSL 670
E R+ ++ P L AN K+ NG P + + S V N + + Q +
Sbjct: 558 QEARKHQYTKPIL-------ANHKKIIIKNGRHPVIEQQLSVDVSYVPNDIYLDNETQQV 610
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
++TGPN GKS+LLR + L+ G VPA A I D I + + D+ A G+S+
Sbjct: 611 IVITGPNMAGKSALLRQVALIVLMAQIGSFVPASQAEIGLVDKIFTRVGASDNLALGEST 670
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVST 787
F VEM+E SI+ + RSL+++DEI RGT T G IA SIIE L N + +T
Sbjct: 671 FMVEMTETASIMHNLSDRSLIVMDEIGRGTSTYDGISIAWSIIEYLHNHPKYKAKTLFAT 730
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L +++ + + + G+ + KL +G S A+ G+P +++
Sbjct: 731 HYHELNQLSDQLERVKNFNVAVKEVAGKIIFLRKLREGGSEHSFGIHVAQLAGMPTQVVE 790
Query: 848 RAEDL 852
RA ++
Sbjct: 791 RASEI 795
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQ 107
+ K+K+P +LL RVGDFYE G DA + L ++ AG P L
Sbjct: 14 EIKAKYPGSLLLFRVGDFYETFGEDAVKTSKLLDIVLTKRANGAAAAVELAGFPHHALDT 73
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L + G+ V I ++++ P + R ++ PG
Sbjct: 74 YLPKLVKAGHRVAICDQLEDPKAVKGIVKRGVTELVTPG 112
>gi|34539964|ref|NP_904443.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis W83]
gi|419970326|ref|ZP_14485825.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis W50]
gi|44888163|sp|Q7MXR7.1|MUTS_PORGI RecName: Full=DNA mismatch repair protein MutS
gi|34396275|gb|AAQ65342.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis W83]
gi|392610997|gb|EIW93751.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis W50]
Length = 891
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 150/320 (46%), Gaps = 28/320 (8%)
Query: 555 KVGEEWFSTLKVEEALERY-------HEA---GAKAKAKVLE--LLRGLSSELQTKINIL 602
KV EW + A ERY +EA GA+ K LE L L +ELQ + L
Sbjct: 484 KVPAEWIRKQTLVSA-ERYITEELKEYEAKILGAEEKIAALEGQLYALLVAELQRYVAPL 542
Query: 603 VFASMLLVIGKALFAHVSEGRRRKWVFPALKD---IELDGANC----LKMNGLSPYWFDA 655
S + L + RR +++ P + + I++ ++ PY
Sbjct: 543 QQDSQAVASLDCLLSFAESARRYRFICPVVDESFTIDIKAGRHPVIEQQLPADEPYI--- 599
Query: 656 AEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
+ ++ D Q + ++TGPN GKS+LLR SL+ G VPAESA I D+I
Sbjct: 600 --ANDIYLDTDRQQVIIVTGPNMSGKSALLRQTALISLMAQIGSFVPAESARIGMVDSIF 657
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D+ + G+S+F VEM E +I+ T RSLVL DE+ RGT T G IA SI+E
Sbjct: 658 TRVGASDNISMGESTFMVEMQEASNILNNLTPRSLVLFDELGRGTSTYDGISIAWSIVEY 717
Query: 776 L-DNIGC--LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
+ DN + +TH H + L ++ + +DG+ + KL G S
Sbjct: 718 IHDNPKAHPRTLFATHYHELNELEGQLDRVHNFNVSAREVDGKMLFLRKLEPGGSAHSFG 777
Query: 833 FETAKREGVPETIIQRAEDL 852
+ A+ G+P I+QRA D+
Sbjct: 778 IQVARLGGMPHHIVQRATDI 797
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKA 98
E L + Q K K P +LL RVGDFYE DA + E G L + + A
Sbjct: 7 ETPLMRQYFQIKQKHPDAILLFRVGDFYETFSEDAIVASEILGITLTRRANGAAQFVELA 66
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
G P L L L R G V I ++++ P + ++ R I+ PG
Sbjct: 67 GFPHHALDTYLPKLVRAGKRVAICDQLEDPKKTKTLVKRGITELVTPG 114
>gi|307710940|ref|ZP_07647365.1| DNA mismatch repair protein MutS [Streptococcus mitis SK321]
gi|307617241|gb|EFN96416.1| DNA mismatch repair protein MutS [Streptococcus mitis SK321]
Length = 844
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + ++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTVVMAQLGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|76800771|ref|YP_325779.1| DNA mismatch repair protein MutS [Natronomonas pharaonis DSM 2160]
gi|115299210|sp|Q3IUH3.1|MUTS_NATPD RecName: Full=DNA mismatch repair protein MutS
gi|76556636|emb|CAI48207.1| DNA mismatch repair protein MutS [Natronomonas pharaonis DSM 2160]
Length = 856
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 106/201 (52%), Gaps = 6/201 (2%)
Query: 657 EGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
E S V N D+ + L ++TGPN GKS+ +R + S+L G VPAE A++P FD
Sbjct: 602 ESSFVPNPTDLPATEPLAVITGPNMSGKSTYMRQVALTSVLTQLGSFVPAERAAVPIFDR 661
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D A G+S+F VEM+E+ +I+ A RSLV++DE+ RGT T G IA +
Sbjct: 662 VFTRVGASDDIAGGRSTFMVEMTELSTILDAADGRSLVVLDEVGRGTSTRDGYAIAQATT 721
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNA-AYKAMGTEYLDGQTVPTWKLVDGICRESL 831
E L D G + +TH H + + ++ A Y DG L G S
Sbjct: 722 EYLHDEAGAFTLFATHHHELTDVAAELPQARNYHFAAARTADGVEF-DHDLRPGAAEASY 780
Query: 832 AFETAKREGVPETIIQRAEDL 852
E A+ GVPE ++ RA++L
Sbjct: 781 GVEVAEMAGVPEAVVDRADEL 801
>gi|315612291|ref|ZP_07887205.1| DNA mismatch repair protein MutS [Streptococcus sanguinis ATCC
49296]
gi|315315684|gb|EFU63722.1| DNA mismatch repair protein MutS [Streptococcus sanguinis ATCC
49296]
Length = 844
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+PE ++ RA+ +
Sbjct: 767 AGLPEELLARADKI 780
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|322375076|ref|ZP_08049590.1| DNA mismatch repair protein MutS [Streptococcus sp. C300]
gi|321280576|gb|EFX57615.1| DNA mismatch repair protein MutS [Streptococcus sp. C300]
Length = 844
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPGELLARADKI 780
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|333907024|ref|YP_004480610.1| DNA mismatch repair protein mutS [Marinomonas posidonica
IVIA-Po-181]
gi|333477030|gb|AEF53691.1| DNA mismatch repair protein mutS [Marinomonas posidonica
IVIA-Po-181]
Length = 877
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 3/187 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D +SL ++TGPN GGKS+ +R I +LL G VPA++ASI D I M S D A
Sbjct: 610 DQRSLLMITGPNMGGKSTYMRQIALITLLAHTGCFVPAQAASIAVVDRIFTRMGSSDDLA 669
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM+E +I+ T SLVL+DE+ RGT T G +A + +E L + C +
Sbjct: 670 GGRSTFMVEMTETANILNNATQNSLVLMDEVGRGTSTFDGLSLAWAAVEHLAQTLKCYVL 729
Query: 785 VSTHLHGIFSLPLKIKNAAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+TH + L ++ A + TEY D + V K+ G +S + A+ GVP+
Sbjct: 730 FATHYFELTGLAEQLDTAENVHLTATEYED-EIVFLHKVHSGPASQSYGLQVAQLAGVPK 788
Query: 844 TIIQRAE 850
+IQ+A+
Sbjct: 789 NVIQQAK 795
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQT 108
KS+ P ++L R+GDFYE DA + L G + IP AG P
Sbjct: 19 LKSQHPNQLLFYRMGDFYELFYDDAKRAAQLLDITLTARGHSGGQPIPMAGIPFHAAENY 78
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L R G SV + E+ P ++ R I+ PG+
Sbjct: 79 IARLVRMGESVVVAEQTGDPATSKGPVERQIARIVTPGT 117
>gi|163119447|ref|YP_079101.2| DNA mismatch repair protein MutS [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404489197|ref|YP_006713303.1| DNA mismatch repair protein MutS [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|81691063|sp|Q65JE2.1|MUTS_BACLD RecName: Full=DNA mismatch repair protein MutS
gi|52348188|gb|AAU40822.1| DNA mismatch repair protein MutS [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|145902954|gb|AAU23463.2| MutS [Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 869
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 18/283 (6%)
Query: 579 KAKAKVLELLRGLSSELQTKINILV-----FASMLLVIGK-ALFAHVSEGRRRKWVFPAL 632
+A+ + EL L SEL++K+ + A M+ + FA +SE R +V P
Sbjct: 503 EAENNICELEYELFSELRSKVKEYIPRLQQLAKMMSELDVLQCFATISENRH--YVKPEF 560
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEG-SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSI 688
D D + +G P + S V N+ +M + + L+TGPN GKS+ +R +
Sbjct: 561 SD---DVVQVI--DGRHPVVEKVMDSQSYVPNSCEMGKGRQMLLITGPNMSGKSTYMRQM 615
Query: 689 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748
S+L G VPA+ A +P FD I + + D G+S+F VEM E ++ + T
Sbjct: 616 ALISILAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVHATKN 675
Query: 749 SLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807
SL+L DEI RGT T G +A +IIE + ++IG + STH H + SL K+ + +
Sbjct: 676 SLILFDEIGRGTSTYDGMALAQAIIEYVHEHIGAKTLFSTHYHELTSLEEKLDDLKNVHV 735
Query: 808 GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
E +G+ V ++ +G +S A+ +P+ +I RA+
Sbjct: 736 RAEEYEGKVVFLHQIKEGAADKSYGIHVAQLAELPDGLISRAK 778
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSSERIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+V+ P A+ R + PG+
Sbjct: 70 CSSYIEQLIKKGYKVAICEQVEDPKSAKGVVKREVVQLITPGT 112
>gi|417794024|ref|ZP_12441287.1| DNA mismatch repair protein MutS [Streptococcus oralis SK255]
gi|334271134|gb|EGL89528.1| DNA mismatch repair protein MutS [Streptococcus oralis SK255]
Length = 844
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMSEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|358465299|ref|ZP_09175249.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 058
str. F0407]
gi|357065794|gb|EHI75969.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 058
str. F0407]
Length = 844
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|319645909|ref|ZP_08000139.1| DNA mismatch repair protein mutS [Bacillus sp. BT1B_CT2]
gi|317391659|gb|EFV72456.1| DNA mismatch repair protein mutS [Bacillus sp. BT1B_CT2]
Length = 863
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 18/283 (6%)
Query: 579 KAKAKVLELLRGLSSELQTKINILV-----FASMLLVIGK-ALFAHVSEGRRRKWVFPAL 632
+A+ + EL L SEL++K+ + A M+ + FA +SE R +V P
Sbjct: 497 EAENNICELEYELFSELRSKVKEYIPRLQQLAKMMSELDVLQCFATISENRH--YVKPEF 554
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEG-SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSI 688
D D + +G P + S V N+ +M + + L+TGPN GKS+ +R +
Sbjct: 555 SD---DVVQVI--DGRHPVVEKVMDSQSYVPNSCEMGKGRQMLLITGPNMSGKSTYMRQM 609
Query: 689 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748
S+L G VPA+ A +P FD I + + D G+S+F VEM E ++ + T
Sbjct: 610 ALISILAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVHATKN 669
Query: 749 SLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807
SL+L DEI RGT T G +A +IIE + ++IG + STH H + SL K+ + +
Sbjct: 670 SLILFDEIGRGTSTYDGMALAQAIIEYVHEHIGAKTLFSTHYHELTSLEEKLDDLKNVHV 729
Query: 808 GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
E +G+ V ++ +G +S A+ +P+ +I RA+
Sbjct: 730 RAEEYEGKVVFLHQIKEGAADKSYGIHVAQLAELPDGLISRAK 772
Score = 46.6 bits (109), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 4 QYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSSERIPMCGVPYHS 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+V+ P A+ R + PG+
Sbjct: 64 CSSYIEQLIKKGYKVAICEQVEDPKSAKGVVKREVVQLITPGT 106
>gi|377557385|ref|ZP_09787033.1| DNA mismatch repair protein mutS [Lactobacillus gastricus PS3]
gi|376165652|gb|EHS84599.1| DNA mismatch repair protein mutS [Lactobacillus gastricus PS3]
Length = 862
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 102/185 (55%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++ L+TGPN GKS+ +R + +++ G VPAESA +P FD I + + D G+
Sbjct: 597 AILLITGPNMSGKSTYMRQLALIAVMTQVGCFVPAESARMPIFDQIFTRIGAADDLVSGE 656
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVST 787
S+F VEM E ++ T+ SL+L DEI RGT T G +A SIIE + +IG + ST
Sbjct: 657 STFMVEMMEANRALSNATANSLILFDEIGRGTATYDGMALAQSIIEYVHAHIGAKTLFST 716
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + SL ++ + +G +G+ V K+ DG +S AK G+P ++
Sbjct: 717 HYHELTSLDHELMHLKNVHVGATEENGELVFLHKVTDGPADKSYGIHVAKLAGMPGDLLH 776
Query: 848 RAEDL 852
RA ++
Sbjct: 777 RANEI 781
>gi|409399224|ref|ZP_11249554.1| DNA mismatch repair protein MutS, partial [Acidocella sp. MX-AZ02]
gi|409131602|gb|EKN01299.1| DNA mismatch repair protein MutS, partial [Acidocella sp. MX-AZ02]
Length = 476
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 103/190 (54%), Gaps = 1/190 (0%)
Query: 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 723
T+ Q L LLTGPN GKS+ LR +L GL VPAE+ + D + + + D
Sbjct: 211 TLAPQRLMLLTGPNMAGKSTFLRQNALLVILAQAGLPVPAEAMQLGLVDRLFSRVGASDD 270
Query: 724 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CL 782
A G+S+F VEM+E +I+ +S V++DEI RGT T G IA +++E+L N C
Sbjct: 271 LASGRSTFMVEMTETAAILHQAGPKSFVIVDEIGRGTGTRDGLAIAQAVLESLHNQNRCR 330
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
I ++H H + L + A M + G+ V ++V+G ++S AK GVP
Sbjct: 331 AIFASHFHELVQLAEALPRLAAHTMRVKEFRGEVVFMHEVVEGAAQKSWGVHVAKLAGVP 390
Query: 843 ETIIQRAEDL 852
+ +++RA+ L
Sbjct: 391 DPVLRRADAL 400
>gi|300855302|ref|YP_003780286.1| DNA mismatch repair protein MutS [Clostridium ljungdahlii DSM
13528]
gi|300435417|gb|ADK15184.1| predicted DNA mismatch repair protein MutS [Clostridium ljungdahlii
DSM 13528]
Length = 891
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 7/199 (3%)
Query: 658 GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G + N +++ + L L+TGPN GKS+ +R I ++ G VPA++ASI D
Sbjct: 595 GEFISNDINIDTGKNQLLLITGPNMAGKSTYMRQIALIVIMAQIGSFVPAKNASISVCDK 654
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA S+I
Sbjct: 655 IFTRIGASDDLASGKSTFMVEMWEVSNILKNATNKSLILLDEVGRGTSTYDGLSIAWSVI 714
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + + C + +TH H + L KI + + ++ V K++ G +S
Sbjct: 715 EYICKNSKLKCKTLFATHYHELTKLEGKIDGVKNYCVSVKEMEDNIVFLRKIIRGGADQS 774
Query: 831 LAFETAKREGVPETIIQRA 849
E AK G+PE +++RA
Sbjct: 775 YGIEVAKLAGLPEEVLKRA 793
>gi|313204209|ref|YP_004042866.1| DNA mismatch repair protein muts [Paludibacter propionicigenes WB4]
gi|312443525|gb|ADQ79881.1| DNA mismatch repair protein MutS [Paludibacter propionicigenes WB4]
Length = 870
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q + ++TGPN GKS+LLR +L+ G VPAESASI D I + + D+ +
Sbjct: 608 ETQQIIIITGPNMSGKSALLRQTAIITLMAQIGCFVPAESASIGVVDKIFTRVGASDNIS 667
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG- 783
G+S+F VEM+E SI+ ++RSLVL DE+ RGT T G IA +I+E + + + C
Sbjct: 668 QGESTFMVEMNEAASILNNLSNRSLVLFDELGRGTSTYDGISIAWAIVEYIHEQVSCKAK 727
Query: 784 -IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + + + +D + + KLV G S AK G+P
Sbjct: 728 TLFATHYHELNEMEKSFHRIKNYNVSVKEVDKKVIFLRKLVRGGSEHSFGIHVAKMAGMP 787
Query: 843 ETIIQRAEDL 852
++I++R+E +
Sbjct: 788 QSIVKRSEQI 797
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 48 MLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPV 102
M QF K+K P +LL R GDFYE DA + G L +++ AG P
Sbjct: 11 MKQFNEIKAKHPDAILLFRCGDFYETFSTDAIQASQILGITLTKRANGAGKTVELAGFPH 70
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPY 149
L L L R G V I ++++ P + R ++ PG Y
Sbjct: 71 HALDTYLPKLVRAGRRVAICDQLEDPKLTKKIVKRGVTELVTPGVSY 117
>gi|218885459|ref|YP_002434780.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756413|gb|ACL07312.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 910
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 145/305 (47%), Gaps = 19/305 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKA---KVLELLRGLSSELQTKINILVFASMLLVIGKAL 615
E F+T +++E E+ A + K+ K+ + LR SE + ++ +F + LL
Sbjct: 512 ERFTTPRLKELEEKLVSASDRRKSLEYKLFQKLRETVSEARPRV---LFMADLLAGFDYW 568
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSL 670
+ RR W P L A+ L G P +A +GSA + N + M + L
Sbjct: 569 QSLAETARRWNWTRPVLAQ----DADILIREGRHPV-VEAMQGSANFIPNDLRMDEARRL 623
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS++LR LL G VPA A + D + + + D+ A G+S+
Sbjct: 624 LLITGPNMAGKSTVLRQTAIICLLAQMGSFVPAREARLGIADRVFSRVGASDNLAQGQST 683
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG---CLGIVST 787
F VEM E I+ RSLV++DEI RGT T G +A +++E L + +T
Sbjct: 684 FMVEMMETARILRQAGKRSLVILDEIGRGTSTFDGLALAWAVVEELARRAGGTIRTLFAT 743
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L +I + G+ V +LV G S E A+ GVP+ ++Q
Sbjct: 744 HYHELTALEGRIPGVHNMNIAIREWGGEIVFLRRLVPGPSDRSYGIEVARLAGVPQPVVQ 803
Query: 848 RAEDL 852
RA +L
Sbjct: 804 RAREL 808
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA-----CILVEYAGLNPFGGLRPESIPKAGCP 101
+ L+ K +P +LL R+GDFYE DA + + NP LR +P G P
Sbjct: 4 QYLRIKDDYPDALLLYRMGDFYEMFFDDAETAARELQIALTCRNPNADLR---VPMCGVP 60
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ + L G+ V + ++++ P +A+ R ++ PG+
Sbjct: 61 HHSVEGYITQLLEKGFKVALCDQIEDPREAKGLVKRAVTRVLTPGT 106
>gi|423682250|ref|ZP_17657089.1| DNA mismatch repair protein MutS [Bacillus licheniformis WX-02]
gi|383439024|gb|EID46799.1| DNA mismatch repair protein MutS [Bacillus licheniformis WX-02]
Length = 869
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 18/283 (6%)
Query: 579 KAKAKVLELLRGLSSELQTKINILV-----FASMLLVIGK-ALFAHVSEGRRRKWVFPAL 632
+A+ + EL L SEL++K+ + A M+ + FA +SE R +V P
Sbjct: 503 EAENNICELEYELFSELRSKVKEYIPRLQQLAKMMSELDVLQCFATISENRH--YVKPEF 560
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEG-SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSI 688
D D + +G P + S V N+ +M + + L+TGPN GKS+ +R +
Sbjct: 561 SD---DIVQVI--DGRHPVVEKVMDSQSYVPNSCEMGKGRQMLLITGPNMSGKSTYMRQM 615
Query: 689 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748
S+L G VPA+ A +P FD I + + D G+S+F VEM E ++ + T
Sbjct: 616 ALISILAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVHATKN 675
Query: 749 SLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807
SL+L DEI RGT T G +A +IIE + ++IG + STH H + SL K+ + +
Sbjct: 676 SLILFDEIGRGTSTYDGMALAQAIIEYVHEHIGAKTLFSTHYHELTSLEEKLDDLKNVHV 735
Query: 808 GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
E +G+ V ++ +G +S A+ +P+ +I RA+
Sbjct: 736 RAEEYEGKVVFLHQIKEGAADKSYGIHVAQLAELPDGLISRAK 778
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSSERIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+V+ P A+ R + PG+
Sbjct: 70 CSSYIEQLIKKGYKVAICEQVEDPKSAKGVVKREVVQLITPGT 112
>gi|294496664|ref|YP_003543157.1| DNA mismatch repair protein MutS [Methanohalophilus mahii DSM 5219]
gi|292667663|gb|ADE37512.1| DNA mismatch repair protein MutS [Methanohalophilus mahii DSM 5219]
Length = 881
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)
Query: 627 WVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKS 682
+V P++ D L G P ++ +G + N V+M + L+TGPN GKS
Sbjct: 577 YVRPSITD----DCRILIRQGRHPVVENSVDGGFIPNDVEMDCSDEQFLLITGPNMAGKS 632
Query: 683 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 742
+ +R + ++ G VPA AS+ D I + ++D A G+S+F VEM E+ +I+
Sbjct: 633 TYMRQVALIVIMAQAGSFVPASHASVGIVDRIFTRVGAFDDLASGQSTFMVEMVELANIL 692
Query: 743 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVS---THLHGIFSLPLKI 799
+T++SLVL+DEI RGT T G IA +++E + N G G+ S TH H + + +
Sbjct: 693 NNSTAKSLVLLDEIGRGTSTYDGYSIAKAVVEYIHNKGRQGVRSLFATHYHQLTEIAESL 752
Query: 800 KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
K + + V K+V G +S A+ GVP + +RA+ +
Sbjct: 753 KRVKNYHIAVKEDGDDLVFLRKIVPGATDKSYGIHVARLAGVPHKVTKRAQSI 805
Score = 48.5 bits (114), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFG-GLRPESIPKAGCPVVNLRQT 108
K + P ++ R+GDFYE+ G DA + + L G G E +P AG P +
Sbjct: 15 KEQHPDSLIFFRMGDFYESFGEDAKTIAQELDITLTTRGKGKDGEKMPLAGIPYHAVDNY 74
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS------------PYVFGLVGI 156
L L R GY V + E+++ P A+ R + PG+ Y+ + G
Sbjct: 75 LPRLVRKGYKVAVCEQLEDPKNAKGVVKRGVVRVVTPGTVIDSSMLSDPSNNYLMAIAGR 134
Query: 157 DHDL 160
D D
Sbjct: 135 DKDF 138
>gi|448508042|ref|ZP_21615276.1| DNA mismatch repair protein MutS [Halorubrum distributum JCM 9100]
gi|448518492|ref|ZP_21617569.1| DNA mismatch repair protein MutS [Halorubrum distributum JCM 10118]
gi|445697619|gb|ELZ49679.1| DNA mismatch repair protein MutS [Halorubrum distributum JCM 9100]
gi|445705073|gb|ELZ56977.1| DNA mismatch repair protein MutS [Halorubrum distributum JCM 10118]
Length = 978
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 3/202 (1%)
Query: 657 EGSAVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
E S V N D+ S+ ++TGPN GKS+ +RS+ A +L G VPA++A++P FD +
Sbjct: 652 EASFVPNDADLPRGSVAVITGPNMSGKSTYMRSVALAVVLAQTGSFVPAQAATLPVFDRL 711
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D A G+S+F EMSE+ I+ + SLVL+DE+ RGT T G IA + E
Sbjct: 712 FTRVGASDDIAGGQSTFMREMSELTEILHDADADSLVLLDEVGRGTATTDGRAIARAAAE 771
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH HG+ L + + DG ++V G S
Sbjct: 772 FLHDELGATALFATHYHGLTDLADERERVFNLHFTATREDGDVTFLHRVVPGASSSSYGV 831
Query: 834 ETAKREGVPETIIQRAEDLYIA 855
E A+ GVP ++ RA DL A
Sbjct: 832 EVAELAGVPGPVVDRARDLVAA 853
>gi|326498831|dbj|BAK02401.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1331
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 113/218 (51%), Gaps = 18/218 (8%)
Query: 656 AEGSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 710
+GS V N ++M S +LTGPN GGKS+LLR +C +L G VPAE+ +
Sbjct: 1058 GKGSFVPNNINMGGPGNASFIILTGPNMGGKSTLLRQVCLTIILAQIGANVPAENLELSL 1117
Query: 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770
D I + M + D GKS+F VE+ E S++++ T SLV +DE+ RGT T+ G IA
Sbjct: 1118 VDRIFVRMGARDHIMAGKSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAA 1177
Query: 771 SIIETL-DNIGCLGIVSTHLH--------GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWK 821
S+++ L + CLG+ STH H G SL A G L+ T ++
Sbjct: 1178 SVLDYLVHRVQCLGLFSTHYHKLAVEHEDGKVSL---CHMACQVGTGEGGLEEVTF-LYR 1233
Query: 822 LVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 859
L G C +S A+ G+P +++QRA + I N
Sbjct: 1234 LTAGSCPKSYGVNVARLAGIPASVLQRANEKSIDFEAN 1271
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE 93
LKN L G W +FKS+ +VL ++G FYE +DA + + L G +P
Sbjct: 380 LKN--LTGGQRQW--WEFKSQHMDKVLFFKMGKFYELYEMDAHVGTKELNLQYMKGDQPH 435
Query: 94 SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P NL L+ L + GY V +VE+ + P Q R+
Sbjct: 436 ----CGFPEKNLAVNLEKLAQKGYRVLVVEQTETPDQLDLRR 473
>gi|331267175|ref|YP_004326805.1| DNA mismatch repair protein MutS [Streptococcus oralis Uo5]
gi|326683847|emb|CBZ01465.1| DNA mismatch repair protein MutS [Streptococcus oralis Uo5]
Length = 844
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|365154967|ref|ZP_09351363.1| DNA mismatch repair protein mutS [Bacillus smithii 7_3_47FAA]
gi|363628892|gb|EHL79593.1| DNA mismatch repair protein mutS [Bacillus smithii 7_3_47FAA]
Length = 872
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 13/243 (5%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM-----QSL 670
FA VSE ++ +V P D L++ G + S ++ D + +
Sbjct: 549 FATVSE--KQHYVKPRFND-----GRTLRIKGGRHPVVEKVMDSQMYVANDCLMDKGREM 601
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS+ +R I ++L G VPAE A +P FD + + + D G+S+
Sbjct: 602 LLITGPNMSGKSTYMRQIALTAILAQIGCFVPAEEAVLPIFDQVFTRIGASDDLISGQST 661
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHL 789
F VEM E R+ + T SL+L DEI RGT T G +A +IIE + D+IG + STH
Sbjct: 662 FMVEMLEARNAIVHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHY 721
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + L ++ + +G+ V K+ +G +S A+ +P+T+I+RA
Sbjct: 722 HELTVLEKELDQLKNVHVSAVEQNGKLVFLHKVKEGAADKSYGIHVAELANLPQTLIKRA 781
Query: 850 EDL 852
+++
Sbjct: 782 KEI 784
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K+++ L R+GDFYE I A +E + GG E IP G P
Sbjct: 10 QYLKIKAEYQDAFLFFRLGDFYEMFFDDAIKASKELEITLTSRDGG-GDERIPMCGVPYH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L GY V I E+ + P QA+ R + PG+
Sbjct: 69 SADSYIQQLIEKGYKVAICEQTEDPKQAKGVVKREVIQLITPGT 112
>gi|419707083|ref|ZP_14234586.1| DNA mismatch repair protein mutS [Streptococcus salivarius PS4]
gi|383283168|gb|EIC81129.1| DNA mismatch repair protein mutS [Streptococcus salivarius PS4]
Length = 852
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 2/210 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNVQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPIFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPP 871
P +++RA+ + + V I +E+ P
Sbjct: 770 PADLLERADTILTQLEGDTVTIQPQEKVSP 799
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYEDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|58584515|ref|YP_198088.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont strain TRS
of Brugia malayi]
gi|58418831|gb|AAW70846.1| Mismatch repair ATPase, MutS family [Wolbachia endosymbiont strain
TRS of Brugia malayi]
Length = 819
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPA+SA I D I + +
Sbjct: 621 IANSINLSGIHLITGPNMAGKSTFLRQNALIAILAHMGSFVPADSAHIGVIDKIFSRVGA 680
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 681 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 740
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + +K+ + + + + ++V+G+ ES AK
Sbjct: 741 KCRAIFATHYHELTKVSKYLKSVKCFCVRIKEWKEEVIFLHEVVEGVADESYGIHVAKLA 800
Query: 840 GVPETIIQRAEDLY 853
G P++I+ RA +++
Sbjct: 801 GFPDSILNRASEVF 814
>gi|304440469|ref|ZP_07400358.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371221|gb|EFM24838.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 864
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 165/356 (46%), Gaps = 32/356 (8%)
Query: 525 GKKFRPTVWASTPGEEQIKQLK---------------PAVD-------SKGRKVGEEWFS 562
GKKF + A E IK LK A+D K VG E F
Sbjct: 448 GKKFLIDLEAKEKEETGIKNLKIKYNKILGYFIEVTKSALDMVPERYIRKQTLVGSERFF 507
Query: 563 TLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEG 622
T++++E + A +A + L+L L + ++L+ S ++ L
Sbjct: 508 TIELKEMESKILNAHDEANSLQLKLYDNLIENFKKYTSLLLEVSEIVSRIDVLQGLAKSA 567
Query: 623 RRRKWVFPALKDIELDGANCLKMNGLSP-YWFDAAEGSAVHNT----VDMQSLFLLTGPN 677
+++ P L + D +K +G P F + S + N +D + ++TGPN
Sbjct: 568 IENRFIRPELNE---DNTIIIK-DGRHPIVEFKNRDDSFIPNDTILDMDKNLIHIITGPN 623
Query: 678 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 737
GKS+ +R I ++ G VPA+S +I D I + + D+ + G+S+F VEM E
Sbjct: 624 MAGKSTYMRQIALIVIMAQIGSFVPAKSCNIGIVDRIFTRIGASDNLSKGESTFMVEMKE 683
Query: 738 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP 796
+ +I+ T +SL+++DE+ RGT T G IA SI+E + +NIG + +TH H + +
Sbjct: 684 VANILKNATDKSLIILDEVGRGTSTFDGMSIAWSIVEYISENIGAKTVFATHYHELSKIE 743
Query: 797 LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
KN + + + + + K+V+G S + AK G+ E + +RAE++
Sbjct: 744 ETYKNVSNLNIKVKKDGEEIIFLRKIVEGWTDNSYGIDVAKLAGIDEKVTKRAEEI 799
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYA--GLNPFGGLRPESIPKAGCPVVN 104
+ L+ K + +L R+GDFYE DA + L GG + IP G P
Sbjct: 15 QYLETKKNYEDAILFYRLGDFYEMFFDDAITASKELDLALTGRGGGLDDKIPMCGIPHHV 74
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L L GY V I ++V+ P A+ R ++ PG+
Sbjct: 75 FKNYLSKLIDKGYKVAICDQVEDPKLAKGIVKREVTKVVTPGT 117
>gi|414157706|ref|ZP_11414002.1| DNA mismatch repair protein mutS [Streptococcus sp. F0441]
gi|410871624|gb|EKS19571.1| DNA mismatch repair protein mutS [Streptococcus sp. F0441]
Length = 844
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMSEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPVELLARADKI 780
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|417646303|ref|ZP_12296164.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU144]
gi|329728032|gb|EGG64476.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU144]
Length = 873
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVSQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHENTDNQQTVPSYNDFGRTEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L GY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINKGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 120
>gi|440794306|gb|ELR15471.1| MutS domain V domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 1150
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 102/188 (54%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q L LLTGPN GGKS+LLR C +++ G VPA S + D I + + D+ G
Sbjct: 871 QPLILLTGPNMGGKSTLLRETCVLAIIAQVGCFVPAASCRLSPVDRIFTRIGANDNIMAG 930
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVS 786
+S+F +E+ E SI+ T SLV++DE+ RGT T G IA +++E L +GC + S
Sbjct: 931 QSTFMIELQETASILQHATPASLVILDELGRGTATFDGYSIAYAVLEHLSRKVGCRTLFS 990
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT--WKLVDGICRESLAFETAKREGVPET 844
TH H + ++ + A K M D + T +K+ DG+C +S A+ GV E
Sbjct: 991 THYHMLTDEVVRNPHIALKHMSCHIDDDRKEVTFLYKVADGVCPKSYGMNVARMAGVNEE 1050
Query: 845 IIQRAEDL 852
I+ AE +
Sbjct: 1051 IVASAEKI 1058
>gi|311068227|ref|YP_003973150.1| DNA mismatch repair protein MutS [Bacillus atrophaeus 1942]
gi|310868744|gb|ADP32219.1| DNA mismatch repair protein MutS [Bacillus atrophaeus 1942]
Length = 860
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 22/287 (7%)
Query: 579 KAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--------FAHVSEGRRRKWVFP 630
+A+ + EL L +EL+ KI + + L + K + FA +SE R ++ P
Sbjct: 503 EAENNICELEYELFAELREKIKM--YIPRLQKLAKQMSELDALQCFATISENRH--YIKP 558
Query: 631 ALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDM---QSLFLLTGPNGGGKSSLLR 686
+ ++ ++G P + V N +M + L+TGPN GKS+ +R
Sbjct: 559 VFSEDHVEV-----IDGRHPVVEKVMDSQEYVPNNCEMGESSQMLLITGPNMSGKSTYMR 613
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
I S+L G VPA+ A +P FD I + + D G+S+F VEM E ++ + T
Sbjct: 614 QIALISILAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNAT 673
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
SL+L DEI RGT T G +A +IIE + D+IG + STH H + L K+
Sbjct: 674 KNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEEKLSQLKNV 733
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ E +G V ++ +G +S A+ +P+ +I RA+D+
Sbjct: 734 HVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDDLIARAQDI 780
>gi|297565946|ref|YP_003684918.1| DNA mismatch repair protein MutS [Meiothermus silvanus DSM 9946]
gi|296850395|gb|ADH63410.1| DNA mismatch repair protein MutS [Meiothermus silvanus DSM 9946]
Length = 848
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 105/200 (52%), Gaps = 4/200 (2%)
Query: 657 EGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
EG + N ++M L +LTGPN GKS+ LR +LLG G VPAE A +P FD
Sbjct: 596 EGRFIANDLEMGPEARLLILTGPNMSGKSTYLRQTALIALLGQIGSFVPAEEAVLPIFDR 655
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A G+S+F VEM E+ I+ T+RSLVL+DEI RGT T G +A +
Sbjct: 656 IYTRIGAADDIAGGRSTFMVEMEELAQILQGATARSLVLLDEIGRGTSTYDGLSLAWAAS 715
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E L D I L + +TH + +LP + A + G V +++ G +S
Sbjct: 716 EYLHDRIKALTLFATHYFELTALPETLPAARNYHVAAREEVGGLVFYHQVLPGPASKSYG 775
Query: 833 FETAKREGVPETIIQRAEDL 852
E A+ G+P ++ RA L
Sbjct: 776 LEVARLAGLPPEVLGRAGQL 795
Score = 43.5 bits (101), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPVVNL 105
+ ++ + +P +LL +VGDFYEA G DA L G+ + + P AG P+ +
Sbjct: 17 QYVELRDAYPDYLLLFQVGDFYEAFGEDAERLSRALGITLTHKTSKDFTTPMAGIPIRSA 76
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L+ L + G+ V + E+ + A R ++ PG+
Sbjct: 77 DSHLERLLKMGFRVGLAEQTEPVEAAEGLVRREVTQLLTPGT 118
>gi|145480193|ref|XP_001426119.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393192|emb|CAK58721.1| unnamed protein product [Paramecium tetraurelia]
Length = 1103
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 104/183 (56%), Gaps = 1/183 (0%)
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
LLTGPN GKS+LLR I + +L G VPA+S ++ FD I + + D +GKS+
Sbjct: 892 LLLTGPNMSGKSTLLRLIGVSIILAQIGCAVPAQSFTLTPFDRIFCRLGATDRLLEGKST 951
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHL 789
F +E+ E ++I+ TSRSLV+IDE+ RGT T G +A +++ L D + + +TH
Sbjct: 952 FFIELEETKTILDNCTSRSLVIIDELGRGTSTYDGVALASAVLRFLSDKTKPMTLFATHY 1011
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + KN + M Q V +KL++G+ +S A A+ GVP+ +I++A
Sbjct: 1012 HILLDEFALFKNISQCVMKHYQEKDQVVFKYKLIEGVAEKSFATNVAQIAGVPKEVIKKA 1071
Query: 850 EDL 852
+ +
Sbjct: 1072 KQM 1074
>gi|452822105|gb|EME29128.1| DNA mismatch repair protein MutS [Galdieria sulphuraria]
Length = 1007
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 106/205 (51%), Gaps = 13/205 (6%)
Query: 658 GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
GS V N++D+ L +LTGPN GKS LR I LL G VPA+ A + DA
Sbjct: 720 GSFVSNSIDLSHQSSRLVILTGPNSSGKSCYLRQIGTIQLLAQIGSFVPAQEAQLSIMDA 779
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D G+S+F VEM+E I+ T SLVL+DEI RGT T G IA S+
Sbjct: 780 IFTRVGAVDDIGSGQSTFMVEMTETARILRQATKYSLVLLDEIGRGTTTLDGLSIAWSVA 839
Query: 774 ETL-DNIGCLGIVSTHLHGIFSL----PLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828
E L NI CL I +TH H + L P I N K + D Q + K++ G
Sbjct: 840 EYLSSNIQCLSIFATHYHEMNELASVFPWVI-NLQVKVIEK---DDQVIFLHKVIPGGAN 895
Query: 829 ESLAFETAKREGVPETIIQRAEDLY 853
+S + A G+P+ +++RA ++
Sbjct: 896 KSYGIQVAGLSGLPDVVVERARTVW 920
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPE--SIPKAGCPVVNLRQ 107
KS+ P +LL RVGDFYE+ DA IL E L GG + +P +G P +L +
Sbjct: 84 KSEHPDYLLLYRVGDFYESFFDDAQILAETLEVTLTSKGGGKDLGCKVPMSGIPQHSLDK 143
Query: 108 TLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFISGHAHPGS 147
L L + V + ++ + T QA S R ++ PG+
Sbjct: 144 YLSILLKKNVKVAVCDQTEPATMAQAGSLVKRQVTRLLTPGT 185
>gi|429220683|ref|YP_007182327.1| DNA mismatch repair protein MutS [Deinococcus peraridilitoris DSM
19664]
gi|429131546|gb|AFZ68561.1| DNA mismatch repair protein MutS [Deinococcus peraridilitoris DSM
19664]
Length = 854
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 3/197 (1%)
Query: 659 SAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N D+ + + LLTGPN GKS+ LR++ +LL G VPA++A +P FD I
Sbjct: 599 SFVPNDADLDTTRRVLLLTGPNMAGKSTYLRTVALCALLHQIGSFVPADAAELPLFDGIH 658
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D A G+S+F VEMSE+ +I+ TSRSLV++DE+ RGT T G IA + +E
Sbjct: 659 TRIGASDDLAGGRSTFMVEMSELAAILHGATSRSLVILDEVGRGTSTLDGLAIAWATLEH 718
Query: 776 LDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
L G + +TH + L ++ + + G ++V G + S E
Sbjct: 719 LHRTGAFALFATHYFELTRLEGELPGVVNLHVAAQEEAGALTFYHQVVPGAAKSSYGVEV 778
Query: 836 AKREGVPETIIQRAEDL 852
A+ G+P + RA L
Sbjct: 779 ARLAGLPGAVTARAGQL 795
>gi|334136573|ref|ZP_08510034.1| DNA mismatch repair protein MutS [Paenibacillus sp. HGF7]
gi|333605906|gb|EGL17259.1| DNA mismatch repair protein MutS [Paenibacillus sp. HGF7]
Length = 907
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 98/185 (52%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + L+ G VPA SA IP D I + + D G+
Sbjct: 605 SMLLITGPNMAGKSTYMRQVAVICLMAQIGCFVPASSAKIPIIDRIFTRIGAADDLIGGQ 664
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVST 787
S+F VEM +I+ + T RSLV+IDE+ RGT T +G IA ++IE L + IGC +VST
Sbjct: 665 STFMVEMMDIQVMTEKATERSLVIIDELGRGTSTGEGMAIAQAVIEFLHHEIGCKTLVST 724
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L + M + Q KL+ G S A+ G+P+ II
Sbjct: 725 HFHELAHLEESLPQLRNYCMAVKESGQQVTFLRKLIRGAASTSYGIYCAQIAGLPDGIIS 784
Query: 848 RAEDL 852
R+ +L
Sbjct: 785 RSYEL 789
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K++ P L R+GDFYE I+A +E L GG E IP G P
Sbjct: 10 QYLAIKAQVPDAFLFFRLGDFYELFFEDAINASRELEIT-LTGRGGGTEERIPMCGVPYH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + L GY I E+V+ P+ A+ R I PG+
Sbjct: 69 SADNYISRLIEKGYKAAICEQVEDPSAAKGVVRREIVRIVTPGT 112
>gi|322388728|ref|ZP_08062325.1| DNA mismatch repair protein HexA [Streptococcus infantis ATCC
700779]
gi|419844218|ref|ZP_14367517.1| DNA mismatch repair protein MutS [Streptococcus infantis ATCC
700779]
gi|321140347|gb|EFX35855.1| DNA mismatch repair protein HexA [Streptococcus infantis ATCC
700779]
gi|385702104|gb|EIG39255.1| DNA mismatch repair protein MutS [Streptococcus infantis ATCC
700779]
Length = 844
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 4/192 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMDEDTSIQLITGPNMSGKSTYMRQLAITAVMAQMGSYVPAESAQLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLEASLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAE 850
G+P +++RA+
Sbjct: 767 AGLPADLLKRAD 778
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLVERGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|417656597|ref|ZP_12306280.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU028]
gi|329736258|gb|EGG72530.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU028]
Length = 602
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 124/275 (45%), Gaps = 13/275 (4%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D ++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D
Sbjct: 321 DETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLV 380
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGI 784
GKS+F VEM E + +T T SL++ DEI RGT T G +A ++IE + +
Sbjct: 381 SGKSTFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTL 440
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + SL +K + G+ + K+ DG +S + AK +P
Sbjct: 441 FSTHYHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNE 500
Query: 845 IIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAH 904
+I RA+ V++ A EQ P + G+T++ I H
Sbjct: 501 VIDRAQ----------VILNAFEQKPSYQLSHENTDNQQTVPSYNDFGRTEEEQSVIETH 550
Query: 905 RGKEGMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 551 TSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNM 585
>gi|399890152|ref|ZP_10776029.1| DNA mismatch repair protein MutS [Clostridium arbusti SL206]
Length = 878
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Query: 663 NTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
NT D Q L L+TGPN GKS+ +R + ++ G VPA+ A I D I + + D
Sbjct: 603 NTTDEQ-LMLITGPNMAGKSTYMRQVALIVIMAQIGSFVPAQDAIISICDKIFTRIGASD 661
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE---TLDNI 779
A GKS+F VEM E+ +I+ TS+SL+++DE+ RGT T G IA S++E T +I
Sbjct: 662 DLAAGKSTFMVEMWEVSNILKNATSKSLIILDEVGRGTSTYDGLSIAWSVVEYICTNKDI 721
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C + +TH H + SL I ++ + ++ V K+V G +S E AK
Sbjct: 722 KCKTLFATHYHELTSLEGVINGLKNYSIAVKQIEDDIVFLRKIVPGGADQSYGIEVAKLA 781
Query: 840 GVPETIIQRAEDL 852
G+PE + RA+++
Sbjct: 782 GLPEKVTSRAKEI 794
>gi|330507603|ref|YP_004384031.1| DNA mismatch repair protein MutS [Methanosaeta concilii GP6]
gi|328928411|gb|AEB68213.1| DNA mismatch repair protein MutS [Methanosaeta concilii GP6]
Length = 877
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 5/208 (2%)
Query: 650 PYWFDAAEGSAVHNTV----DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES 705
P A G+ V N V D L +LTGPN GKS+ +R I +++ G VPA
Sbjct: 585 PVLDKAMRGAFVPNDVLLDTDRNRLIILTGPNMAGKSTFMRQIALTAIMAQTGSFVPAAY 644
Query: 706 ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKG 765
AS+ D + + +YD + G+S+F VEM+EI I+T+ T +SLVL+DE+ RGT T G
Sbjct: 645 ASLSLVDQVFTRVGAYDDLSAGQSTFMVEMTEIAHILTSATRKSLVLLDEVGRGTSTFDG 704
Query: 766 TCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVD 824
+A +I E L ++I C + +TH H + L + ++ + G +V
Sbjct: 705 LSLAWAISEYLHESIKCKSVFATHYHQLTDLESILSGVRNYSIAVKEDKGTITFLRTVVP 764
Query: 825 GICRESLAFETAKREGVPETIIQRAEDL 852
G +S A+ GVP T+ +RA+ +
Sbjct: 765 GATDKSYGVHVARLAGVPRTVTKRADQI 792
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP---ESIPKAGCPVVNLR 106
Q K +P +LL RVGDFYE DA I+ + + E IP AG P +L
Sbjct: 15 QNKKLYPDALLLFRVGDFYETFADDAVIVARDLNITLTSRQKDDQGEKIPLAGVPYHSLD 74
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L R G+ V I ++V+ P AR R I+ PG+
Sbjct: 75 AYLARLIRAGHKVAICDQVEDPKLARGLVKRAITRVVTPGT 115
>gi|306826023|ref|ZP_07459359.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304431739|gb|EFM34719.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 844
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|228476706|ref|ZP_04061375.1| DNA mismatch repair protein MutS [Streptococcus salivarius SK126]
gi|228251655|gb|EEK10752.1| DNA mismatch repair protein MutS [Streptococcus salivarius SK126]
Length = 852
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 2/210 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNVQLITGPNMSGKSTYMRQLALSVVMAQMGAYVPADSIDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPP 871
P +++RA+ + V I +E+ P
Sbjct: 770 PADLLERADTILTQLEGETVTIQPQEKVSP 799
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQSYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|167040248|ref|YP_001663233.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X514]
gi|256750830|ref|ZP_05491715.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914332|ref|ZP_07131648.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X561]
gi|307724432|ref|YP_003904183.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X513]
gi|166854488|gb|ABY92897.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X514]
gi|256750413|gb|EEU63432.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889267|gb|EFK84413.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X561]
gi|307581493|gb|ADN54892.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X513]
Length = 867
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 149/284 (52%), Gaps = 18/284 (6%)
Query: 580 AKAKVLELLRGLSSELQTKINILVF-----ASMLLVIGKAL-FAHVSEGRRRKWVFPALK 633
A+ K++EL L +E++ K+ + + A + +I + FA V+E R ++ P +
Sbjct: 519 AEEKLIELEYQLFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETNR--YIKPIV- 575
Query: 634 DIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSIC 689
D ++ + + G P ++ S V N +D+ S + ++TGPN GKS+ +R +
Sbjct: 576 ----DYSDRIVIKEGRHPVIETISDESFVANDIDIGSENPIMIITGPNMAGKSTYMRQVA 631
Query: 690 AASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 749
L+ G VPA A I D I + + D G+S+F VEMSE+ +I+ + TS+S
Sbjct: 632 LIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKS 691
Query: 750 LVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 808
L+++DE+ RGT T G IA ++IE + + I + +TH H + L K+K +
Sbjct: 692 LIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNVS 751
Query: 809 TEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
E + + K+V G +S + +K G+P +I++RA+++
Sbjct: 752 VEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEI 795
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+ +L R+GDFYE DA I +E A G E P AG P
Sbjct: 9 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTE-ERAPMAGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P +A+ R + PG+
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKGLVKRDVVRIYTPGT 111
>gi|399035064|ref|ZP_10732588.1| DNA mismatch repair protein MutS [Rhizobium sp. CF122]
gi|398067162|gb|EJL58705.1| DNA mismatch repair protein MutS [Rhizobium sp. CF122]
Length = 921
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 25/281 (8%)
Query: 575 EAGAKAKAKVLELLRGLS--SELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL 632
+AGA+A A V+++ GL+ ++ Q LV AS + I V + RR+ P +
Sbjct: 593 KAGARALA-VIDVAAGLALLADEQAYCRPLVDASKMFAIEGGRHPVVEQALRRQSSGPFV 651
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS 692
+ NC LSP D +G+ ++LLTGPN GGKS+ LR +
Sbjct: 652 AN------NC----DLSPVA-DGKDGA----------IWLLTGPNMGGKSTFLRQNALIA 690
Query: 693 LLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVL 752
+L G VPA SA I D + + + D A G+S+F VEM E +I+ T RSLV+
Sbjct: 691 ILAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVI 750
Query: 753 IDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 811
+DEI RGT T G IA + +E L C G+ +TH H + L K+ + M +
Sbjct: 751 LDEIGRGTATFDGLSIAWAAVEHLHEANHCRGLFATHFHELTVLSEKLARLSNATMRVKE 810
Query: 812 LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
DG + ++ G S + A+ G+P +++ RA D+
Sbjct: 811 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDV 851
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + IP G PV
Sbjct: 43 QFIEIKANNPDSLLFYRMGDFYELFFDDALEASRALGITLTKRGQHMGQDIPMCGVPVHA 102
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L G+ V + E+V+ P +A+ R S+ +
Sbjct: 103 ADDYLQKLIGLGFRVAVCEQVEDPAEAKKRGSKSV 137
>gi|429766908|ref|ZP_19299148.1| MutS domain V protein [Clostridium celatum DSM 1785]
gi|429182791|gb|EKY23874.1| MutS domain V protein [Clostridium celatum DSM 1785]
Length = 475
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 101/184 (54%), Gaps = 3/184 (1%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L+TGPN GKS+ +R + +L+ G VPA A+I D I + + D A GKS
Sbjct: 177 FLLITGPNMAGKSTYMRQVALITLMAQIGSFVPASYANISVCDKIFTRIGASDDLAGGKS 236
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVS 786
+F VEM E+ +I+ TS SLVL+DE+ RGT T G IA S+IE + N + C + +
Sbjct: 237 TFMVEMWEVSNILKNATSDSLVLLDEVGRGTSTYDGLSIAWSVIEYISNKEELKCNTLFA 296
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L I+ ++ + + Q V K+V+G +S E AK G+P+ +I
Sbjct: 297 THYHELTKLEGIIEGVKNYSVAVKETNEQVVFLRKIVEGGADQSYGIEVAKLAGLPKEVI 356
Query: 847 QRAE 850
RA+
Sbjct: 357 NRAK 360
>gi|257454099|ref|ZP_05619373.1| DNA mismatch repair protein MutS [Enhydrobacter aerosaccus SK60]
gi|257448577|gb|EEV23546.1| DNA mismatch repair protein MutS [Enhydrobacter aerosaccus SK60]
Length = 967
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 4/208 (1%)
Query: 644 KMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA 703
+M L P+ A + ++ L L+TGPN GGKS+ +R LL CG VPA
Sbjct: 684 QMASLDPF---VANDCVMGTATQLERLMLITGPNMGGKSTYMRQTALIVLLACCGAYVPA 740
Query: 704 ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETA 763
+S ++ + I + S D A GKS+F VEM E +I+ + SLVL+DE+ RGT T
Sbjct: 741 QSVTLGRIERIFTRIGSADDLASGKSTFMVEMIETANIMNQANANSLVLMDEVGRGTSTQ 800
Query: 764 KGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKL 822
G IA + + L + IGCL + +TH + L + + + T+ ++GQ + K+
Sbjct: 801 DGLAIAHACVNYLAEKIGCLTLFATHYFELTELAERHPKMFNQHLVTQEINGQLLLLHKI 860
Query: 823 VDGICRESLAFETAKREGVPETIIQRAE 850
G S AK G+P+ ++ +A+
Sbjct: 861 APGATHRSFGLHVAKMAGLPQALLAQAQ 888
>gi|450010873|ref|ZP_21828835.1| DNA mismatch repair protein MutS [Streptococcus mutans A19]
gi|450023558|ref|ZP_21830673.1| DNA mismatch repair protein MutS [Streptococcus mutans U138]
gi|449189860|gb|EMB91480.1| DNA mismatch repair protein MutS [Streptococcus mutans A19]
gi|449193165|gb|EMB94556.1| DNA mismatch repair protein MutS [Streptococcus mutans U138]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|421276331|ref|ZP_15727154.1| DNA mismatch repair protein MutS [Streptococcus mitis SPAR10]
gi|395878284|gb|EJG89351.1| DNA mismatch repair protein MutS [Streptococcus mitis SPAR10]
Length = 844
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 4/192 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMDEDTSIQLITGPNMSGKSTYMRQLAITAVMAQMGSYVPAESARLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLEASLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAE 850
G+P +++RA+
Sbjct: 767 AGLPADLLKRAD 778
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLVERGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|410696516|gb|AFV75584.1| DNA mismatch repair protein MutS [Thermus oshimai JL-2]
Length = 804
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I +
Sbjct: 565 VPNDLEMDHGLVLVTGPNMAGKSTFLRQTALIALLAQMGSFVPAEEAVLPLFDRIFTRIG 624
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A G+S+F VEM E+ ++ T +SLVL+DE+ RGT + G IA ++ E L
Sbjct: 625 AADDLAGGRSTFMVEMEEVAQVLREATEKSLVLLDEVGRGTSSLDGVAIATAVAEALHER 684
Query: 780 GCLGIVSTHLHGIFSLPL-KIKN---AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
C + +TH + +L L ++KN AA + G Q +P G +S E
Sbjct: 685 RCYALFATHYFELTALNLPRLKNLHVAAKEEAGGLVFYHQVLP------GPASKSYGVEV 738
Query: 836 AKREGVPETIIQRAEDL 852
A+ G+P +++RA L
Sbjct: 739 AQMAGLPREVVERARAL 755
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 13 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLALTHKTSKDFTTPMAGIPI 72
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + I ++V+ +A R ++ PG+
Sbjct: 73 RAFDAYAERLLKLGFRLAIADQVEPAEEAEGLVRREVTQLLTPGT 117
>gi|449886728|ref|ZP_21786393.1| DNA mismatch repair protein MutS [Streptococcus mutans SA41]
gi|449914234|ref|ZP_21795499.1| DNA mismatch repair protein MutS [Streptococcus mutans 15JP3]
gi|449936544|ref|ZP_21804032.1| DNA mismatch repair protein MutS [Streptococcus mutans 2ST1]
gi|450040377|ref|ZP_21836770.1| DNA mismatch repair protein MutS [Streptococcus mutans T4]
gi|450076207|ref|ZP_21849744.1| DNA mismatch repair protein MutS [Streptococcus mutans N3209]
gi|450153979|ref|ZP_21877477.1| DNA mismatch repair protein MutS [Streptococcus mutans 21]
gi|449158390|gb|EMB61807.1| DNA mismatch repair protein MutS [Streptococcus mutans 15JP3]
gi|449165514|gb|EMB68518.1| DNA mismatch repair protein MutS [Streptococcus mutans 2ST1]
gi|449199018|gb|EMC00103.1| DNA mismatch repair protein MutS [Streptococcus mutans T4]
gi|449212791|gb|EMC13142.1| DNA mismatch repair protein MutS [Streptococcus mutans N3209]
gi|449238250|gb|EMC37024.1| DNA mismatch repair protein MutS [Streptococcus mutans 21]
gi|449253805|gb|EMC51743.1| DNA mismatch repair protein MutS [Streptococcus mutans SA41]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|345017667|ref|YP_004820020.1| DNA mismatch repair protein mutS [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033010|gb|AEM78736.1| DNA mismatch repair protein mutS [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 867
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 149/284 (52%), Gaps = 18/284 (6%)
Query: 580 AKAKVLELLRGLSSELQTKINILVF-----ASMLLVIGKAL-FAHVSEGRRRKWVFPALK 633
A+ K++EL L +E++ K+ + + A + +I + FA V+E R ++ P +
Sbjct: 519 AEEKLIELEYQLFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETNR--YIKPIV- 575
Query: 634 DIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSIC 689
D ++ + + G P ++ S V N +D+ S + ++TGPN GKS+ +R +
Sbjct: 576 ----DYSDRIVITEGRHPVIETISDESFVANDIDIGSENPIMIITGPNMAGKSTYMRQVA 631
Query: 690 AASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 749
L+ G VPA A I D I + + D G+S+F VEMSE+ +I+ + TS+S
Sbjct: 632 LIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKS 691
Query: 750 LVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 808
L+++DE+ RGT T G IA ++IE + + I + +TH H + L K+K +
Sbjct: 692 LIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNVS 751
Query: 809 TEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
E + + K+V G +S + +K G+P +I++RA+++
Sbjct: 752 VEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEI 795
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGL--RPESIPKAGCPVVN 104
+ L+ K K+ +L R+GDFYE DA I + + G E P AG P
Sbjct: 9 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDVGTEERAPMAGVPYHA 68
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P +A+ R + PG+
Sbjct: 69 ADFYIDKLIKKGYKVAICEQLEDPAKAKGLVKRDVVRIYTPGT 111
>gi|71032141|ref|XP_765712.1| DNA repair protein [Theileria parva strain Muguga]
gi|68352669|gb|EAN33429.1| DNA repair protein, putative [Theileria parva]
Length = 1160
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ ++TGPN GGKS+LLR I ++G G V + D+I + + D+ GKS
Sbjct: 923 ILIITGPNMGGKSTLLRQIALTVIMGQIGSFVSCVESEFSVVDSIFTRLGASDNILQGKS 982
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789
+F VE+ +I SI++ TS SL LIDE+ RGT T GT IA + +E + IGC + +TH
Sbjct: 983 TFLVELQDISSILSKATSSSLALIDELGRGTSTFDGTAIAVATLEKISKIGCRCVFTTHF 1042
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPT---WKLVDGICRESLAFETAKREGVPETII 846
+ + N + M + +D +T +KLV G+C +S AK VPE II
Sbjct: 1043 QDVCMFAESLSNVSMFHMAAK-VDEETRSVEFLYKLVPGVCPDSHGMHVAKLARVPEHII 1101
Query: 847 QRA 849
Q A
Sbjct: 1102 QNA 1104
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYS 118
++ ++G FYE DACIL GL G E+ P G P ++ GY
Sbjct: 256 LVFFKMGKFYELFYQDACILQGLTGLRWMGA---ETKPHVGFPEKSIHSYASACVNAGYR 312
Query: 119 VCIVEEVQGPTQARSR 134
V +VE+ + P Q R
Sbjct: 313 VVVVEQTETPQQLDKR 328
>gi|449893954|ref|ZP_21789009.1| DNA mismatch repair protein MutS [Streptococcus mutans SF12]
gi|449255571|gb|EMC53419.1| DNA mismatch repair protein MutS [Streptococcus mutans SF12]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|24380425|ref|NP_722380.1| DNA mismatch repair protein MutS [Streptococcus mutans UA159]
gi|449983731|ref|ZP_21818602.1| DNA mismatch repair protein MutS [Streptococcus mutans NFSM2]
gi|450081136|ref|ZP_21851541.1| DNA mismatch repair protein MutS [Streptococcus mutans N66]
gi|450181402|ref|ZP_21887810.1| DNA mismatch repair protein MutS [Streptococcus mutans 24]
gi|44888210|sp|Q8DRW8.1|MUTS_STRMU RecName: Full=DNA mismatch repair protein MutS
gi|24378451|gb|AAN59686.1|AE015031_2 DNA mismatch repair protein [Streptococcus mutans UA159]
gi|449180987|gb|EMB83119.1| DNA mismatch repair protein MutS [Streptococcus mutans NFSM2]
gi|449215613|gb|EMC15795.1| DNA mismatch repair protein MutS [Streptococcus mutans N66]
gi|449246526|gb|EMC44828.1| DNA mismatch repair protein MutS [Streptococcus mutans 24]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|304385250|ref|ZP_07367595.1| DNA mismatch repair protein MutS [Pediococcus acidilactici DSM
20284]
gi|304328457|gb|EFL95678.1| DNA mismatch repair protein MutS [Pediococcus acidilactici DSM
20284]
Length = 894
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 124/276 (44%), Gaps = 19/276 (6%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + ++ G VPAE A++P FD I + + D G+S
Sbjct: 604 ILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAEEATLPIFDQIFTRIGAADDLISGQS 663
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E + T+ SL+L DEI RGT T G +A SIIE + N+ + STH
Sbjct: 664 TFMVEMQEANRALKDGTANSLILFDEIGRGTATYDGMALAQSIIEFIHQNVHAKTLFSTH 723
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L + +G DG V K+ DG +S AK G+P++++ R
Sbjct: 724 YHELTALDQTLTRLKNVHVGAVEQDGNLVFLHKMEDGPADKSYGIHVAKLAGMPDSLLAR 783
Query: 849 A----EDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRA- 903
A E L + + A E P P + Q D G +
Sbjct: 784 ASVILEQLENENQGDAAKLTASETPQPVFTASQAAET-----------QPADQSGAEESS 832
Query: 904 --HRGKEGMQSASFLYFVVPGKSIACQIETLLINQL 937
+E ++ L+ P + Q++T ++ QL
Sbjct: 833 VTSSSREVVEEQMALFDTTPAQKKTNQLQTQVVEQL 868
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K ++P L R+GDFYE DA L+E L + IP G P
Sbjct: 13 QYMEIKKQYPDAFLFYRIGDFYELFYDDAIKGSQLLELT-LTARSKNADDPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P A+ R + PG+
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPKAAKGMVKREVIQLVTPGT 115
>gi|449943285|ref|ZP_21806343.1| DNA mismatch repair protein MutS [Streptococcus mutans 11A1]
gi|449149448|gb|EMB53250.1| DNA mismatch repair protein MutS [Streptococcus mutans 11A1]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|322374236|ref|ZP_08048768.1| DNA mismatch repair protein MutS [Streptococcus sp. C150]
gi|321276840|gb|EFX53913.1| DNA mismatch repair protein MutS [Streptococcus sp. C150]
Length = 852
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 2/210 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPP 871
P +++RA+ + V I +E+ P
Sbjct: 770 PTDLLERADTILTQLEGETVTIQPQEKVSP 799
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYEDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|418664779|ref|ZP_13226245.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU081]
gi|374410225|gb|EHQ80986.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU081]
Length = 877
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 600 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 659
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 660 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 719
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 720 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 779
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 780 AQ----------VILNAFEQKPSYQLSHENTDNQQTVPSYNDFGRTEEEQSVIETHTSNH 829
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 830 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 860
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 14 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 74 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 124
>gi|340713019|ref|XP_003395049.1| PREDICTED: probable DNA mismatch repair protein Msh6-like [Bombus
terrestris]
Length = 1130
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 152/335 (45%), Gaps = 32/335 (9%)
Query: 539 EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTK 598
+ QIK++ + + ++ G + + T + +E L R A + +L R + ++ K
Sbjct: 775 DSQIKKIGAGYELQSQRKGYKRYYTAETKELLSRQINAEEHRDKVLKDLNRRIFAKFSEK 834
Query: 599 -------------INILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKM 645
+++L+ + + G V++G ++ VF ++D C+
Sbjct: 835 YDMWNMAVYKLSVLDVLISLAEYALSGDMCIPEVNDGTDKR-VFIDIRD---GWHPCIIS 890
Query: 646 NGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES 705
+ P + + T + S +LTGPN GGKS+L+R + +++ G VPA S
Sbjct: 891 DTFIP-------NNTLLGTENSASFMILTGPNMGGKSTLMRQVALLTIMTQIGSYVPASS 943
Query: 706 ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKG 765
+ D I + + D G+S+F VE+SE +I+ T SLVL+DE+ RGT T G
Sbjct: 944 CCLTLVDRIFTRLGANDDILAGQSTFLVELSETSAILQHATPYSLVLLDELGRGTSTYDG 1003
Query: 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG----TEYLDGQTVPT-- 819
T IA S++ L + C + STH H + K M E D + T
Sbjct: 1004 TAIAASVVNALTKLNCRTLFSTHYHSLVEDYKNTKEITLAHMACMVENEEQDEVSQETVT 1063
Query: 820 --WKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+KL +G C +S F A+ GVP I RA ++
Sbjct: 1064 FLYKLSEGACPKSYGFNAARLAGVPSVITNRAHEI 1098
>gi|397650621|ref|YP_006491148.1| DNA mismatch repair protein MutS [Streptococcus mutans GS-5]
gi|449955937|ref|ZP_21809353.1| DNA mismatch repair protein MutS [Streptococcus mutans 4VF1]
gi|449994773|ref|ZP_21822700.1| DNA mismatch repair protein MutS [Streptococcus mutans A9]
gi|450120898|ref|ZP_21865985.1| DNA mismatch repair protein MutS [Streptococcus mutans ST6]
gi|450127820|ref|ZP_21868765.1| DNA mismatch repair protein MutS [Streptococcus mutans U2A]
gi|450139692|ref|ZP_21872619.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML1]
gi|392604190|gb|AFM82354.1| DNA mismatch repair protein MutS [Streptococcus mutans GS-5]
gi|449170870|gb|EMB73560.1| DNA mismatch repair protein MutS [Streptococcus mutans 4VF1]
gi|449184933|gb|EMB86842.1| DNA mismatch repair protein MutS [Streptococcus mutans A9]
gi|449229792|gb|EMC29087.1| DNA mismatch repair protein MutS [Streptococcus mutans ST6]
gi|449230235|gb|EMC29502.1| DNA mismatch repair protein MutS [Streptococcus mutans U2A]
gi|449232637|gb|EMC31740.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML1]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|322392638|ref|ZP_08066098.1| DNA mismatch repair protein HexA [Streptococcus peroris ATCC
700780]
gi|321144630|gb|EFX40031.1| DNA mismatch repair protein HexA [Streptococcus peroris ATCC
700780]
Length = 844
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 4/192 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMDEETSIQLITGPNMSGKSTYMRQLAITAVMAQMGSYVPAESAYLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLEASLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAE 850
G+P +++RA+
Sbjct: 767 AGLPADLLKRAD 778
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDALVERGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|449911081|ref|ZP_21795000.1| DNA mismatch repair protein MutS [Streptococcus mutans OMZ175]
gi|449258712|gb|EMC56276.1| DNA mismatch repair protein MutS [Streptococcus mutans OMZ175]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|290581355|ref|YP_003485747.1| DNA mismatch repair protein [Streptococcus mutans NN2025]
gi|449864684|ref|ZP_21778542.1| DNA mismatch repair protein MutS [Streptococcus mutans U2B]
gi|449869471|ref|ZP_21780118.1| DNA mismatch repair protein MutS [Streptococcus mutans 8ID3]
gi|449932949|ref|ZP_21803054.1| DNA mismatch repair protein MutS [Streptococcus mutans 3SN1]
gi|450005598|ref|ZP_21826759.1| DNA mismatch repair protein MutS [Streptococcus mutans NMT4863]
gi|450030663|ref|ZP_21833354.1| DNA mismatch repair protein MutS [Streptococcus mutans G123]
gi|450051790|ref|ZP_21841027.1| DNA mismatch repair protein MutS [Streptococcus mutans NFSM1]
gi|450058934|ref|ZP_21843297.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML4]
gi|450068238|ref|ZP_21847049.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML9]
gi|450092543|ref|ZP_21856048.1| DNA mismatch repair protein MutS [Streptococcus mutans W6]
gi|450100399|ref|ZP_21858755.1| DNA mismatch repair protein MutS [Streptococcus mutans SF1]
gi|450116656|ref|ZP_21864596.1| DNA mismatch repair protein MutS [Streptococcus mutans ST1]
gi|450149199|ref|ZP_21876037.1| DNA mismatch repair protein MutS [Streptococcus mutans 14D]
gi|450164012|ref|ZP_21881083.1| DNA mismatch repair protein MutS [Streptococcus mutans B]
gi|450171968|ref|ZP_21884324.1| DNA mismatch repair protein MutS [Streptococcus mutans SM4]
gi|254998254|dbj|BAH88855.1| DNA mismatch repair protein [Streptococcus mutans NN2025]
gi|449158184|gb|EMB61606.1| DNA mismatch repair protein MutS [Streptococcus mutans 8ID3]
gi|449160796|gb|EMB64037.1| DNA mismatch repair protein MutS [Streptococcus mutans 3SN1]
gi|449188389|gb|EMB90101.1| DNA mismatch repair protein MutS [Streptococcus mutans NMT4863]
gi|449192615|gb|EMB94030.1| DNA mismatch repair protein MutS [Streptococcus mutans G123]
gi|449201604|gb|EMC02594.1| DNA mismatch repair protein MutS [Streptococcus mutans NFSM1]
gi|449203589|gb|EMC04446.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML4]
gi|449207233|gb|EMC07911.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML9]
gi|449218096|gb|EMC18118.1| DNA mismatch repair protein MutS [Streptococcus mutans W6]
gi|449220472|gb|EMC20342.1| DNA mismatch repair protein MutS [Streptococcus mutans SF1]
gi|449226760|gb|EMC26251.1| DNA mismatch repair protein MutS [Streptococcus mutans ST1]
gi|449234922|gb|EMC33908.1| DNA mismatch repair protein MutS [Streptococcus mutans 14D]
gi|449242469|gb|EMC41055.1| DNA mismatch repair protein MutS [Streptococcus mutans B]
gi|449243285|gb|EMC41730.1| DNA mismatch repair protein MutS [Streptococcus mutans SM4]
gi|449264755|gb|EMC62090.1| DNA mismatch repair protein MutS [Streptococcus mutans U2B]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|450072842|ref|ZP_21848815.1| DNA mismatch repair protein MutS [Streptococcus mutans M2A]
gi|449210723|gb|EMC11158.1| DNA mismatch repair protein MutS [Streptococcus mutans M2A]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|449876159|ref|ZP_21782633.1| DNA mismatch repair protein MutS [Streptococcus mutans S1B]
gi|449904938|ref|ZP_21792938.1| DNA mismatch repair protein MutS [Streptococcus mutans M230]
gi|449973522|ref|ZP_21814762.1| DNA mismatch repair protein MutS [Streptococcus mutans 11VS1]
gi|449179451|gb|EMB81662.1| DNA mismatch repair protein MutS [Streptococcus mutans 11VS1]
gi|449252967|gb|EMC50934.1| DNA mismatch repair protein MutS [Streptococcus mutans S1B]
gi|449258777|gb|EMC56337.1| DNA mismatch repair protein MutS [Streptococcus mutans M230]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|449964622|ref|ZP_21811410.1| DNA mismatch repair protein MutS [Streptococcus mutans 15VF2]
gi|449172346|gb|EMB74976.1| DNA mismatch repair protein MutS [Streptococcus mutans 15VF2]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|449896268|ref|ZP_21789561.1| DNA mismatch repair protein MutS [Streptococcus mutans R221]
gi|449989438|ref|ZP_21821053.1| DNA mismatch repair protein MutS [Streptococcus mutans NVAB]
gi|450046201|ref|ZP_21838823.1| DNA mismatch repair protein MutS [Streptococcus mutans N34]
gi|449182552|gb|EMB84572.1| DNA mismatch repair protein MutS [Streptococcus mutans NVAB]
gi|449199233|gb|EMC00311.1| DNA mismatch repair protein MutS [Streptococcus mutans N34]
gi|449262451|gb|EMC59900.1| DNA mismatch repair protein MutS [Streptococcus mutans R221]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|450106968|ref|ZP_21860781.1| DNA mismatch repair protein MutS [Streptococcus mutans SF14]
gi|450132413|ref|ZP_21870043.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML8]
gi|449153190|gb|EMB56878.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML8]
gi|449222661|gb|EMC22380.1| DNA mismatch repair protein MutS [Streptococcus mutans SF14]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+V+ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQVEDPKKAVGVVKREVVQVITPGT 114
>gi|418016939|ref|ZP_12656498.1| DNA mismatch repair protein MutS [Streptococcus salivarius M18]
gi|345527632|gb|EGX30940.1| DNA mismatch repair protein MutS [Streptococcus salivarius M18]
Length = 852
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 2/220 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNVQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYV 881
P +++RA+ + V I +E+ P A+ +V
Sbjct: 770 PADLLERADTILTQLEGETVTIQPQEKVSPQEKPATETHV 809
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYEDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|319403583|emb|CBI77165.1| DNA mismatch repair protein MutS [Bartonella rochalimae ATCC
BAA-1498]
Length = 911
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI--GKALFAH 618
F+T ++ E R A LE+ L E+ +I+ + AS L I AH
Sbjct: 540 FTTTELAELESRIAHAANHVLTLELEIFDKLVDEITQQIDFIRQASEALAILDVSVALAH 599
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R V +L G + L+ P+ + + SA + +D ++
Sbjct: 600 LAEEQGYCRPKVDHSLTFHITAGRHPVVEQALRKQAAEPFVANNCDLSAQNKHLDA-DIW 658
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 659 LLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTF 718
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ ++ SLV++DEI RGT T G IA + +E L I C I++TH H
Sbjct: 719 MMEMVETATILNHASNHSLVILDEIGRGTSTFDGLSIAWATVEHLHEINRCRAILATHFH 778
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L K+ M + + + ++ G S + AK G+P T+I RA
Sbjct: 779 EMTALTKKLNRLHNVTMKVKNWNSDVIFLHEVTKGTADRSYGVQVAKLAGLPATVISRAT 838
Query: 851 DL 852
D+
Sbjct: 839 DV 840
Score = 46.2 bits (108), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G + IP G PV +
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFNDAIEAAQALGITLTTRGKHLGQDIPMCGVPVHS 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+++ P +A+ R S+ +
Sbjct: 92 ADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSV 126
>gi|417913342|ref|ZP_12557009.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU109]
gi|341655624|gb|EGS79348.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU109]
Length = 715
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 438 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 497
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 498 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 557
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 558 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 617
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 618 AQ----------VILNAFEQKPSYQLSHENTDNQQTVPSYNDFGRTEEEQSVIETHTSNH 667
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 668 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 698
>gi|450174687|ref|ZP_21884718.1| DNA mismatch repair protein MutS [Streptococcus mutans SM1]
gi|449248143|gb|EMC46404.1| DNA mismatch repair protein MutS [Streptococcus mutans SM1]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|417909951|ref|ZP_12553684.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU037]
gi|341652560|gb|EGS76348.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU037]
Length = 715
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 438 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 497
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 498 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 557
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 558 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 617
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 618 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETHTSNH 667
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 668 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 698
>gi|449969184|ref|ZP_21813059.1| DNA mismatch repair protein MutS [Streptococcus mutans 2VS1]
gi|449174304|gb|EMB76798.1| DNA mismatch repair protein MutS [Streptococcus mutans 2VS1]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|450144043|ref|ZP_21873792.1| DNA mismatch repair protein MutS [Streptococcus mutans 1ID3]
gi|450159299|ref|ZP_21879377.1| DNA mismatch repair protein MutS [Streptococcus mutans 66-2A]
gi|449151249|gb|EMB54990.1| DNA mismatch repair protein MutS [Streptococcus mutans 1ID3]
gi|449241416|gb|EMC40048.1| DNA mismatch repair protein MutS [Streptococcus mutans 66-2A]
Length = 849
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|419768032|ref|ZP_14294169.1| putative DNA mismatch repair protein MutS [Staphylococcus aureus
subsp. aureus IS-250]
gi|383360953|gb|EID38336.1| putative DNA mismatch repair protein MutS [Staphylococcus aureus
subsp. aureus IS-250]
Length = 598
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 124/275 (45%), Gaps = 13/275 (4%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D ++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D
Sbjct: 317 DETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLV 376
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGI 784
GKS+F VEM E + +T T SL++ DEI RGT T G +A ++IE + +
Sbjct: 377 SGKSTFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTL 436
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + SL +K + G+ + K+ DG +S + AK +P
Sbjct: 437 FSTHYHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNE 496
Query: 845 IIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAH 904
+I RA+ V++ A EQ P + G+T++ I H
Sbjct: 497 VIDRAQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETH 546
Query: 905 RGKEGMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 547 TSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNM 581
>gi|418616725|ref|ZP_13179649.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU120]
gi|374820803|gb|EHR84879.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU120]
Length = 873
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.0 bits (110), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 120
>gi|308069371|ref|YP_003870976.1| DNA mismatch repair protein mutS [Paenibacillus polymyxa E681]
gi|305858650|gb|ADM70438.1| DNA mismatch repair protein mutS [Paenibacillus polymyxa E681]
Length = 981
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + +++ G VPA A +P D I + + D G+S
Sbjct: 648 ILLITGPNMAGKSTYMRQVALIAIMAQIGCFVPAARAKVPMLDRIFTRIGAADDLIGGQS 707
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM++I+ + T RSL++IDE+ RGT T++G IA ++IE + D IGC +VSTH
Sbjct: 708 TFMVEMADIQVMTDKATPRSLIIIDELGRGTSTSEGMAIAQAVIEFVHDTIGCKALVSTH 767
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L + + +M + + KL+ G S A+ G+P II+R
Sbjct: 768 FHELAHLEQGLPSLRNYSMAVQESGDKVNFLRKLIPGAASSSYGIYCARLAGLPNNIIER 827
Query: 849 AEDL 852
A L
Sbjct: 828 ANGL 831
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLR 91
L NG K + + L K + L R+GDFYE DA + + + G G
Sbjct: 39 LVNGMSKYTPMIEQYLSIKEQAKDAFLFFRLGDFYEMFFDDAILASKELEITLTGREGGA 98
Query: 92 PESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
E IP G P + + L GY V I E+++ + + R I PG+
Sbjct: 99 TEKIPMCGVPYHSAENYIQRLIEKGYKVAICEQMEEASATKGMVRRDIVRVVTPGT 154
>gi|451822869|ref|YP_007459143.1| DNA mismatch repair protein MutS [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775669|gb|AGF46710.1| DNA mismatch repair protein MutS [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 880
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 1/188 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
+ Q + ++TGPN GGKS+ +R + SLL G VPA ASI D I + + D
Sbjct: 623 TNTQRMLIITGPNMGGKSTYMRQVALISLLARVGSFVPANRASIGKIDRIFTRIGASDDI 682
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLG 783
A GKS+F VEM+E I++A SLVLIDEI RGT T +GT +A I + L N L
Sbjct: 683 AGGKSTFMVEMTETSVILSAGNQNSLVLIDEIGRGTSTMEGTSLAWGIADYLLNTNKSLT 742
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+ +TH + +P KN+ M +D + +L +G +S + A++ G+P
Sbjct: 743 LFATHYFELTQIPNIYKNSINVHMSALEVDNELTFLHELREGPAEQSYGIQVARKAGIPT 802
Query: 844 TIIQRAED 851
+I+++ D
Sbjct: 803 EVIKKSID 810
>gi|340397917|ref|YP_004726942.1| DNA mismatch repair protein mutS [Streptococcus salivarius CCHSS3]
gi|338741910|emb|CCB92415.1| DNA mismatch repair protein mutS [Streptococcus salivarius CCHSS3]
Length = 852
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 2/210 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNVQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPP 871
P +++RA+ + V I +E+ P
Sbjct: 770 PADLLERADTILTQLEGETVTIQPQEKVSP 799
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYEDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQSYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|81427976|ref|YP_394975.1| DNA mismatch repair protein MutS [Lactobacillus sakei subsp. sakei
23K]
gi|90109847|sp|Q38YR4.1|MUTS_LACSS RecName: Full=DNA mismatch repair protein MutS
gi|78609617|emb|CAI54663.1| DNA mismatch repair protein MutS [Lactobacillus sakei subsp. sakei
23K]
Length = 867
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 4/192 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N V M + L+TGPN GKS+ +R + ++ G VPA+SA++P FD I +
Sbjct: 594 NAVQMGKETDMLLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAKSANLPVFDQIFTRIG 653
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + + T+ SL+L DEI RGT T G +A +IIE + D+
Sbjct: 654 AADDLISGQSTFMVEMMEANRAIMSATANSLILFDEIGRGTATYDGMALAQAIIEYIHDH 713
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+ + STH H + +L + +G +G+ V K++ G +S AK
Sbjct: 714 VHAKTLFSTHYHELTALADTLTALRNVHVGAVEENGELVFLHKMLAGPADKSYGIHVAKL 773
Query: 839 EGVPETIIQRAE 850
G+PET++QRA+
Sbjct: 774 AGMPETLLQRAD 785
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDAC---ILVEYAGLNPFGGLRPESIP 96
KE + + + K ++P L R+GDFYE DA L+E L + IP
Sbjct: 6 KETPMMAQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKASQLLELT-LTARNKNAADPIP 64
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P + +D L GY V I E+++ P A+ R + PG+
Sbjct: 65 MCGVPHHAAQNYIDILVDQGYKVAICEQMEDPKTAKGMVKREVVQLVTPGT 115
>gi|418325588|ref|ZP_12936794.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU071]
gi|420185398|ref|ZP_14691490.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM040]
gi|365228190|gb|EHM69375.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU071]
gi|394254384|gb|EJD99353.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM040]
Length = 873
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIVTPGT--VMDQNGMD 120
>gi|293366740|ref|ZP_06613416.1| DNA mismatch repair protein HexA [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291319041|gb|EFE59411.1| DNA mismatch repair protein HexA [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 877
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 600 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 659
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 660 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 719
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 720 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 779
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 780 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETHTSNH 829
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 830 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 860
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 14 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 74 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 124
>gi|27467892|ref|NP_764529.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis ATCC
12228]
gi|57866808|ref|YP_188445.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis RP62A]
gi|282876272|ref|ZP_06285139.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis SK135]
gi|418607717|ref|ZP_13170940.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU057]
gi|418609872|ref|ZP_13173006.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU065]
gi|418612180|ref|ZP_13175226.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU117]
gi|418626780|ref|ZP_13189376.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU126]
gi|420165170|ref|ZP_14671874.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM088]
gi|420172705|ref|ZP_14679203.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM067]
gi|420193967|ref|ZP_14699796.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM021]
gi|420234455|ref|ZP_14739018.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH051475]
gi|421607202|ref|ZP_16048448.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
AU12-03]
gi|38258089|sp|Q8CPF0.1|MUTS_STAES RecName: Full=DNA mismatch repair protein MutS
gi|71151981|sp|Q5HPP5.1|MUTS_STAEQ RecName: Full=DNA mismatch repair protein MutS
gi|27315437|gb|AAO04571.1|AE016747_68 DNA mismatch repair protein [Staphylococcus epidermidis ATCC 12228]
gi|57637466|gb|AAW54254.1| DNA mismatch repair protein HexA [Staphylococcus epidermidis RP62A]
gi|281295297|gb|EFA87824.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis SK135]
gi|374403834|gb|EHQ74829.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU057]
gi|374406208|gb|EHQ77111.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU065]
gi|374820062|gb|EHR84176.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU117]
gi|374831324|gb|EHR95066.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU126]
gi|394236337|gb|EJD81871.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM088]
gi|394241382|gb|EJD86796.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM067]
gi|394266665|gb|EJE11290.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM021]
gi|394304258|gb|EJE47665.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH051475]
gi|406656994|gb|EKC83387.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
AU12-03]
Length = 873
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 124/275 (45%), Gaps = 13/275 (4%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D ++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D
Sbjct: 592 DETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLV 651
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGI 784
GKS+F VEM E + +T T SL++ DEI RGT T G +A ++IE + +
Sbjct: 652 SGKSTFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTL 711
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + SL +K + G+ + K+ DG +S + AK +P
Sbjct: 712 FSTHYHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNE 771
Query: 845 IIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAH 904
+I RA+ V++ A EQ P + G+T++ I H
Sbjct: 772 VIDRAQ----------VILNAFEQKPSYQLSHENTDNQQTVPSYNDFGRTEEEQSVIETH 821
Query: 905 RGKEGMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 822 TSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L GY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINKGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 120
>gi|406026843|ref|YP_006725675.1| DNA mismatch repair protein mutS [Lactobacillus buchneri CD034]
gi|405125332|gb|AFS00093.1| DNA mismatch repair protein mutS [Lactobacillus buchneri CD034]
Length = 862
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + ++ G VPA+ A +P FD I + + D G+
Sbjct: 602 SILLITGPNMSGKSTYMRQMALCVIMNQMGCFVPAKQAKLPVFDKIFTRIGAADDLISGQ 661
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + T SL+L DEI RGT T G +A +IIE + +NIG + ST
Sbjct: 662 STFMVEMKEANDAIENATPNSLILFDEIGRGTATYDGMALAQAIIEYVHNNIGAKTLFST 721
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L +K +G +G+ V K+ G +S AK G+PE ++
Sbjct: 722 HYHELTVLDESLKRLQNVHVGATESNGELVFLHKIQPGPADKSYGIHVAKLAGLPEGLLH 781
Query: 848 RAEDL 852
RA D+
Sbjct: 782 RANDI 786
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 48 MLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES--IPKAGCPV 102
M+Q+ K ++P L R+GDFYE DA + L R + +P G P
Sbjct: 10 MVQYQKIKDQYPDAFLFYRLGDFYEMFNEDAIKGSQLLELTLTNRSRNAANPVPMCGVPH 69
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ +D L GY V I E+++ P A+ R + PG+ G
Sbjct: 70 KAVQNYIDILVDQGYKVAICEQMEDPRLAKGMVKREVIQLVTPGTQVDVG 119
>gi|336379827|gb|EGO20981.1| hypothetical protein SERLADRAFT_441366 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1060
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 156/342 (45%), Gaps = 33/342 (9%)
Query: 533 WASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAK----AKVLELL 588
W + GEE + +LK ++ R+V WF + + L RY K K A+ +E L
Sbjct: 703 WTTFAGEEYLVELKK---TENREVPPNWFIASRTK-YLTRYLTPDVKKKRDERARYMESL 758
Query: 589 RG---------LSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDG 639
+ L+ +Q ++ A L I L + + +V P D +
Sbjct: 759 QAEAIKAFESFLNDIVQDHYTVIRDAVNKLAIADCLLSFAQVALQDGYVRPQFTDED--- 815
Query: 640 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG 695
+ G P V N++DM S ++TGPN GGKSS +R + S++
Sbjct: 816 -KLEIIEGRHPMVEALRSDPFVPNSIDMGGDEPSSKIITGPNMGGKSSAVRMVALISIMA 874
Query: 696 ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDE 755
G VPA+SA + D+I+ M + D G+S+F VEM+ I+ A TSRSLV++DE
Sbjct: 875 QIGSYVPAKSARLGLLDSILTRMGASDELDRGRSTFMVEMAGTSDILQAATSRSLVILDE 934
Query: 756 ICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-----SLPLKIKNAAYKAMGT 809
+ RGT T G +A +++E L N+ C + TH + P I+N
Sbjct: 935 LGRGTSTVDGMAVAHAVLEHLVRNVHCKTLFITHYPLVAVDLERKFPNAIQNLHMGYTAE 994
Query: 810 EYLDGQTVPT--WKLVDGICRESLAFETAKREGVPETIIQRA 849
++G T ++L+ GI ES E A+ GV E I+Q A
Sbjct: 995 TRINGTRDITFLYRLIPGIAAESFGVECARLAGVSEEILQVA 1036
>gi|229915836|ref|YP_002884482.1| DNA mismatch repair protein MutS [Exiguobacterium sp. AT1b]
gi|259511167|sp|C4L191.1|MUTS_EXISA RecName: Full=DNA mismatch repair protein MutS
gi|229467265|gb|ACQ69037.1| DNA mismatch repair protein MutS [Exiguobacterium sp. AT1b]
Length = 842
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 110/211 (52%), Gaps = 9/211 (4%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R ++L G VPAE+A +P FD I + + D
Sbjct: 587 DTRQMLLITGPNMSGKSTYMRQFALIAILHQIGSFVPAEAAELPLFDRIFTRIGAADDLV 646
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM+E R VT TS SL+L+DEI RGT T G +A +I+E + +IG +
Sbjct: 647 SGQSTFMVEMTETRQAVTEATSNSLILLDEIGRGTSTYDGMALAQAIVEYIASSIGAKTL 706
Query: 785 VSTHLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG 840
STH H + S+P ++N +A+ DG+ V ++ G +S A+
Sbjct: 707 FSTHYHELTVLEDSIP-SLENVHVRAIER---DGRVVFLHEVHPGRADKSYGIHVAELAE 762
Query: 841 VPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
+P+++I RA + A EQ P
Sbjct: 763 LPDSLIDRARTILSELESEATKPALNEQSAP 793
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ K+ +P L R+GDFYE DA I+ +E + G IP G P
Sbjct: 12 QYFSIKADYPDAFLFYRLGDFYELFFEDAQIVAKELELTLTSKNGKQAEHPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L G++V I E+ + P + R + PG+
Sbjct: 72 SAAIYIEQLIEKGFNVAICEQTEDPKATKGLVKREVIQVITPGT 115
>gi|418069533|ref|ZP_12706810.1| DNA mismatch repair protein MutS [Pediococcus acidilactici MA18/5M]
gi|357536064|gb|EHJ20095.1| DNA mismatch repair protein MutS [Pediococcus acidilactici MA18/5M]
Length = 894
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 124/273 (45%), Gaps = 13/273 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + ++ G VPAE A++P FD I + + D G+S
Sbjct: 604 ILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAEEATLPIFDQIFTRIGAADDLISGQS 663
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E + T+ SL+L DEI RGT T G +A SIIE + N+ + STH
Sbjct: 664 TFMVEMQEANRALKDGTANSLILFDEIGRGTATYDGMALAQSIIEFIHQNVHAKTLFSTH 723
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L + +G DG V K+ DG +S AK G+P++++ R
Sbjct: 724 YHELTALDQTLTRLKNVHVGAVEQDGNLVFLHKMEDGPADKSYGIHVAKLAGMPDSLLAR 783
Query: 849 A----EDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAH 904
A E L + + A E P P + + +P D
Sbjct: 784 ASVILEQLENENQGDAAKLTASETPQP--VSTASQAAETQP------ADQSGADESSVTS 835
Query: 905 RGKEGMQSASFLYFVVPGKSIACQIETLLINQL 937
+E ++ L+ P + Q++T ++ QL
Sbjct: 836 SSREVVEEQMALFDTTPAQKKTNQLQTQVVEQL 868
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K ++P L R+GDFYE DA L+E L + IP G P
Sbjct: 13 QYMEIKKQYPDAFLFYRIGDFYELFYDDAIKGSQLLELT-LTARSKNADDPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P A+ R + PG+
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPKAAKGMVKREVIQLVTPGT 115
>gi|417659017|ref|ZP_12308630.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU045]
gi|417910863|ref|ZP_12554579.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU105]
gi|418605405|ref|ZP_13168730.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU041]
gi|418624358|ref|ZP_13187033.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU125]
gi|419770876|ref|ZP_14296938.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus IS-K]
gi|420182965|ref|ZP_14689098.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM049]
gi|420187499|ref|ZP_14693519.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM039]
gi|420197185|ref|ZP_14702909.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM020]
gi|420206384|ref|ZP_14711894.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM008]
gi|420209426|ref|ZP_14714863.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM003]
gi|420214224|ref|ZP_14719503.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH05005]
gi|420216056|ref|ZP_14721278.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH05001]
gi|420218838|ref|ZP_14723888.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH04008]
gi|420221913|ref|ZP_14726838.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH08001]
gi|420224775|ref|ZP_14729613.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH06004]
gi|420227086|ref|ZP_14731859.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH05003]
gi|420229409|ref|ZP_14734115.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH04003]
gi|420231767|ref|ZP_14736412.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH051668]
gi|329736656|gb|EGG72922.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU045]
gi|341655051|gb|EGS78787.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU105]
gi|374402502|gb|EHQ73527.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU041]
gi|374827587|gb|EHR91448.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU125]
gi|383362425|gb|EID39777.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus IS-K]
gi|394249428|gb|EJD94641.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM049]
gi|394255941|gb|EJE00877.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM039]
gi|394265992|gb|EJE10638.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM020]
gi|394278223|gb|EJE22540.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM008]
gi|394278873|gb|EJE23185.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM003]
gi|394283589|gb|EJE27754.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH05005]
gi|394289944|gb|EJE33814.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH08001]
gi|394291583|gb|EJE35381.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH04008]
gi|394292506|gb|EJE36248.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH05001]
gi|394294178|gb|EJE37864.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH06004]
gi|394297587|gb|EJE41184.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH05003]
gi|394299175|gb|EJE42726.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH04003]
gi|394302309|gb|EJE45757.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIH051668]
Length = 873
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.0 bits (110), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 120
>gi|251810727|ref|ZP_04825200.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
BCM-HMP0060]
gi|251805887|gb|EES58544.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
BCM-HMP0060]
Length = 877
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 600 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 659
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 660 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 719
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 720 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 779
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 780 AQ----------VILNAFEQKPSYQLSHENTDNQQTVPSYNDFGRTEEEQSVIETHTSNH 829
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 830 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 860
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 14 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L GY V I E+++ P Q + R + PG+ V G+D
Sbjct: 74 ADNYIETLINKGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 124
>gi|196247548|ref|ZP_03146250.1| DNA mismatch repair protein MutS [Geobacillus sp. G11MC16]
gi|196212332|gb|EDY07089.1| DNA mismatch repair protein MutS [Geobacillus sp. G11MC16]
Length = 909
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 7/189 (3%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R + +++ G VPAE A +P FD + + + D + G
Sbjct: 599 REMLLITGPNMAGKSTYMRQVALTAIMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAG 658
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R +T T SL+L DEI RGT T G +A ++IE + D+IG + S
Sbjct: 659 QSTFMVEMLEARRAITHATQNSLILFDEIGRGTSTYDGMALAQAMIEYIHDHIGAKTLFS 718
Query: 787 THLHGIFSLPLKIK---NAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
TH H + +L ++ N +A+ +G+ V ++ DG S A+ G+P
Sbjct: 719 THYHELTALESSLERLCNVHARAVEE---NGKVVFLHQIADGPADRSYGIHVAELAGLPI 775
Query: 844 TIIQRAEDL 852
++I+RA D+
Sbjct: 776 SLIERARDI 784
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+++P L R+GDFYE DA + L G E +P G P +
Sbjct: 10 QYLHIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AQGYIEQLVEKGYKVAICEQVEDPKTAKGVVRREVVQLVTPGT 112
>gi|138894826|ref|YP_001125279.1| DNA mismatch repair protein MutS [Geobacillus thermodenitrificans
NG80-2]
gi|189030720|sp|A4IMI0.1|MUTS_GEOTN RecName: Full=DNA mismatch repair protein MutS
gi|134266339|gb|ABO66534.1| DNA mismatch repair protein MutS [Geobacillus thermodenitrificans
NG80-2]
Length = 910
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 7/189 (3%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R + +++ G VPAE A +P FD + + + D + G
Sbjct: 600 REMLLITGPNMAGKSTYMRQVALTAIMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAG 659
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R +T T SL+L DEI RGT T G +A ++IE + D+IG + S
Sbjct: 660 QSTFMVEMLEARRAITHATQNSLILFDEIGRGTSTYDGMALAQAMIEYIHDHIGAKTLFS 719
Query: 787 THLHGIFSLPLKIK---NAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
TH H + +L ++ N +A+ +G+ V ++ DG S A+ G+P
Sbjct: 720 THYHELTALESSLERLCNVHARAVEE---NGKVVFLHQIADGPADRSYGIHVAELAGLPI 776
Query: 844 TIIQRAEDL 852
++I+RA D+
Sbjct: 777 SLIERARDI 785
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+++P L R+GDFYE DA + L G E +P G P +
Sbjct: 11 QYLHIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYHS 70
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 71 AQGYIEQLVEKGYKVAICEQVEDPKTAKGVVRREVVQLVTPGT 113
>gi|440781999|ref|ZP_20960227.1| DNA mismatch repair protein MutS [Clostridium pasteurianum DSM 525]
gi|440220717|gb|ELP59924.1| DNA mismatch repair protein MutS [Clostridium pasteurianum DSM 525]
Length = 875
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 107/193 (55%), Gaps = 4/193 (2%)
Query: 663 NTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
NT D Q L L+TGPN GKS+ +R + ++ G VPA++A I D I + + D
Sbjct: 603 NTTDEQ-LMLITGPNMAGKSTYMRQVALIVIMSQIGSFVPAKNAVISVCDRIFTRIGASD 661
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNI 779
A GKS+F VEM E+ +I+ T++SL+++DE+ RGT T G IA S++E L N+
Sbjct: 662 DLAAGKSTFMVEMWEVSNILKNATTKSLIILDEVGRGTSTYDGLSIAWSVVEYLCTNKNL 721
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C + +TH H + +L I ++ + + V K+V G +S E AK
Sbjct: 722 KCKTLFATHYHELTALEGVISGLKNYSIAVKQIQDNIVFLRKIVSGGADQSYGIEVAKLA 781
Query: 840 GVPETIIQRAEDL 852
G+PE + +RA+++
Sbjct: 782 GLPEKVTKRAKEI 794
>gi|387787015|ref|YP_006252111.1| DNA mismatch repair protein [Streptococcus mutans LJ23]
gi|379133416|dbj|BAL70168.1| DNA mismatch repair protein [Streptococcus mutans LJ23]
Length = 849
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L +P AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPVPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|374386498|ref|ZP_09643998.1| DNA mismatch repair protein MutS [Odoribacter laneus YIT 12061]
gi|373224427|gb|EHP46767.1| DNA mismatch repair protein MutS [Odoribacter laneus YIT 12061]
Length = 871
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKS+LLR ++L G VPAESA I Y D I + + D+ + G
Sbjct: 611 QQIIIITGPNMAGKSALLRQTALITILAQAGCFVPAESAKIGYVDKIFTRVGASDNISQG 670
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGI 784
+S+F VEM+E +I+ + RSLVL DE+ RGT T G IA +I+E L +
Sbjct: 671 ESTFMVEMNEAANILNNISDRSLVLFDELGRGTSTYDGISIAWAIVEFLHENPKYRAKTL 730
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + + K + + +D + V KLV G S + + G+P++
Sbjct: 731 FATHYHELNEMERTFKKIKNYNVSVKEIDNKVVFLRKLVKGGSNHSFGIQVGRMAGLPQS 790
Query: 845 IIQRAEDL 852
+I+RA ++
Sbjct: 791 VIKRASEI 798
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ K+K+P ++L R+GDFYE G DA I + G L P + AG P
Sbjct: 14 QYFSMKAKYPDAIMLYRMGDFYETFGEDAAITAKILGITLTKRSHGSPGDVALAGFPHHA 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPY 149
L L L R G V I E+++ P + R + PG Y
Sbjct: 74 LDVYLPKLVRAGQRVAICEQLEDPKLTKKLVKRGVIELVTPGVSY 118
>gi|449981704|ref|ZP_21817909.1| DNA mismatch repair protein MutS [Streptococcus mutans 5SM3]
gi|449175600|gb|EMB78006.1| DNA mismatch repair protein MutS [Streptococcus mutans 5SM3]
Length = 849
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|426403908|ref|YP_007022879.1| DNA mismatch repair protein MutS [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860576|gb|AFY01612.1| DNA mismatch repair protein MutS [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 834
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 9/231 (3%)
Query: 626 KWVFPALKDIELDGANCLKMNG-LSPYWFDAAEGSAVHNTVDMQ--SLFLLTGPNGGGKS 682
K+V P DG+ LKM P + + V N ++++ S LLTGPN GKS
Sbjct: 529 KYVRPKFS---ADGS--LKMKASRHPVVEQTVKKNFVANDLELRQHSCLLLTGPNMAGKS 583
Query: 683 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 742
+L+R + ++L G VP + A +P FDAI + + D ++G S+F VEM+E +++
Sbjct: 584 TLMRQVALNAILAQMGSFVPCDEAEMPIFDAIFTRIGASDQLSEGLSTFMVEMTETSAML 643
Query: 743 TATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCLGIVSTHLHGIFSLPLKIKN 801
T SLV++DE+ RGT T G C+A SI+E L ++ L +TH H + SL
Sbjct: 644 KNATKDSLVILDEVGRGTSTFDGMCLAQSILEHLLSDVKALTFFATHYHELTSLDQSFGQ 703
Query: 802 AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
M +G+ LV G +S + A+ G+P T+ +RA+ L
Sbjct: 704 ITNAHMTVAERNGEIRFLHTLVKGPALKSYGVQVAELAGLPATVTKRAKSL 754
>gi|451940146|ref|YP_007460784.1| DNA mismatch repair protein MutS [Bartonella australis Aust/NH1]
gi|451899533|gb|AGF73996.1| DNA mismatch repair protein MutS [Bartonella australis Aust/NH1]
Length = 911
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 146/302 (48%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI--GKALFAH 618
F+T ++ E R A A LE+ L +E+ T+I+ + A+ L + AH
Sbjct: 540 FTTTELAELESRIAHAANNAITLELEIFDELVNEITTQIDFIRGAAEALSVLDVSVALAH 599
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R + +L + G + L+ P+ + + SA +++
Sbjct: 600 LAEEQGYCRPKIDDSLTFHIIAGRHPVVEQALRKQTDKPFVANDCDLSA-QQKQQYAAIW 658
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 659 LLTGPNMGGKSTFLRQNALITIMAQMGSFVPASSAHIGVVDRLFSRVGASDDLARGRSTF 718
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ + SLV++DEI RGT T G IA + +E L + C I++TH H
Sbjct: 719 MMEMVETATILNHASDHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNRCRAILATHFH 778
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L K+ M + +G V ++ G+ S + AK G+PET+I RA
Sbjct: 779 EMTVLTEKLNRLHNVTMKVKNWEGDVVFLHEVTKGVADRSYGVQVAKLAGLPETVIARAT 838
Query: 851 DL 852
++
Sbjct: 839 NV 840
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFNDAVEAAQALGITLTTRGKHLGEDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+ + PT+A+ R S+ +
Sbjct: 92 ADDYLQKLIARGYRVAVCEQTEDPTEAKKRGSKSV 126
>gi|403220570|dbj|BAM38703.1| uncharacterized protein TOT_010001218 [Theileria orientalis strain
Shintoku]
Length = 1014
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ ++TGPN GGKS+LLR I ++G G V A S D++ + + D+ +GKS
Sbjct: 779 IIVITGPNMGGKSTLLRQIALTVIMGQMGSFVSASSCEFSVVDSVFTRLGASDNLVEGKS 838
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789
+F VE+ +I +I++ TS SL LIDE+ RGT T GT IA + +E + IGC + +TH
Sbjct: 839 TFLVELQDISNILSKATSSSLALIDELGRGTSTFDGTAIAAATLEKISKIGCRCVFTTHF 898
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPT---WKLVDGICRESLAFETAKREGVPETII 846
+ + KN M +D Q +KLV G+C +S AK +P+ ++
Sbjct: 899 QDVCRSAKEFKNVTMYHMAAR-VDEQEQNVEFLYKLVPGVCPDSHGLHVAKLAKIPDHVL 957
Query: 847 QRA 849
+ A
Sbjct: 958 RTA 960
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE 93
++G E W K ++ ++G FYE DACIL L G E
Sbjct: 111 FRSGHYTECMQQW--WNIKQNHFDSLVFFKMGRFYELFYHDACILQSLVNLRWMGS---E 165
Query: 94 SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
+ P G P ++ +GY V +VE+ + P Q R
Sbjct: 166 TKPHVGFPEKSIHTYAKACVNSGYKVVVVEQTETPQQLEKR 206
>gi|420212650|ref|ZP_14717998.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM001]
gi|394279611|gb|EJE23917.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM001]
Length = 873
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 120
>gi|309807428|ref|ZP_07701391.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV
01V1-a]
gi|308169350|gb|EFO71405.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV
01V1-a]
Length = 854
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANTALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|418622020|ref|ZP_13184776.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU123]
gi|374827395|gb|EHR91257.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU123]
Length = 873
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 120
>gi|385260920|ref|ZP_10039058.1| DNA mismatch repair protein MutS [Streptococcus sp. SK140]
gi|385190193|gb|EIF37642.1| DNA mismatch repair protein MutS [Streptococcus sp. SK140]
Length = 844
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMGEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + + T +SL+L DE+ RGT T G +A +IIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAIAHATEKSLILFDELGRGTATYDGMALAQAIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL + + + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLETSLGHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P +++RA+++
Sbjct: 767 AGLPADLLKRADEI 780
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQ 130
+ +Q +D L GY V I E+++ P Q
Sbjct: 71 SAQQYIDVLVERGYKVAIAEQMEDPKQ 97
>gi|448440866|ref|ZP_21588864.1| DNA mismatch repair protein MutS [Halorubrum saccharovorum DSM
1137]
gi|445689774|gb|ELZ42000.1| DNA mismatch repair protein MutS [Halorubrum saccharovorum DSM
1137]
Length = 965
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 656 AEGSAVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
AE S V N D+ S+ ++TGPN GKS+ +RS+ A +L G VPA++AS+P FD
Sbjct: 652 AEESFVPNDADLPRGSIAVITGPNMSGKSTYMRSVALAVVLAQTGSFVPAQAASLPVFDR 711
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D A G+S+F EMSE+ I+ SLVL+DE+ RGT T G IA +
Sbjct: 712 LFTRVGASDDIAGGQSTFMREMSELTEILHDAGPDSLVLLDEVGRGTATTDGRAIARAAA 771
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + D +G + +TH H + L + + A DG ++V G S
Sbjct: 772 EFIHDELGATALFATHYHDLTDLAEERERAFNLHFTATREDGDVTFLHRVVPGASSSSYG 831
Query: 833 FETAKREGVPETIIQRAEDLYIACGVNCVMIAA 865
E A+ GVP +++R+ DL A + + A
Sbjct: 832 VEVAELAGVPAPVVERSRDLVAAETDDAEAVGA 864
>gi|55820153|ref|YP_138595.1| DNA mismatch repair protein MutS [Streptococcus thermophilus LMG
18311]
gi|81676784|sp|Q5M6I1.1|MUTS_STRT2 RecName: Full=DNA mismatch repair protein MutS
gi|55736138|gb|AAV59780.1| DNA mismatch repair protein [Streptococcus thermophilus LMG 18311]
Length = 852
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGAYVPADSVDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAARE----QPPPSI 873
P ++ RA+ + V+I +E Q P+I
Sbjct: 770 PTDLLNRADTILTQLEGETVVIQPQEKVLSQEKPAI 805
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|338729931|ref|YP_004659323.1| DNA mismatch repair protein MutS [Thermotoga thermarum DSM 5069]
gi|335364282|gb|AEH50227.1| DNA mismatch repair protein MutS [Thermotoga thermarum DSM 5069]
Length = 810
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 97/188 (51%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ +S +LTGPN GKS+ +R + +L+ G VPAE A +P FD I + M D
Sbjct: 585 NQESFVILTGPNMSGKSTFVRQVGLIALMAQIGSFVPAEEAVLPIFDRIFVKMGVRDDII 644
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGI 784
GKS+F EM+EI I+ T SLVL+DE+ RGT T G IA +I E L I C I
Sbjct: 645 GGKSTFLTEMNEIAKIIYQATKDSLVLLDEVGRGTSTFDGISIAWAISEYLHTKIKCKCI 704
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH + L K + Q + K+VDG+ +S + A G+P
Sbjct: 705 FATHFTELTELANLYDGIVNKTIQVMEQGSQVIFLHKVVDGVADKSYGIDVAAIAGIPAE 764
Query: 845 IIQRAEDL 852
I+QRA ++
Sbjct: 765 IVQRAREV 772
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ LQ KS++ +LL R+GDFYEA DA + + L + + P AG P L
Sbjct: 9 QYLQIKSQYKDAILLFRLGDFYEAFFEDAYTVSKALDL---VLTQRQGAPMAGVPYHALN 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L + GY V I E+++ P A+ R ++ PG+
Sbjct: 66 SYLKRLVQLGYKVAICEQMEDPATAKGLVKRQVTRIVTPGT 106
>gi|449999923|ref|ZP_21824798.1| DNA mismatch repair protein MutS [Streptococcus mutans N29]
gi|449186343|gb|EMB88178.1| DNA mismatch repair protein MutS [Streptococcus mutans N29]
Length = 849
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTRLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|387762216|ref|YP_006069193.1| DNA mismatch repair protein MutS [Streptococcus salivarius 57.I]
gi|339292983|gb|AEJ54330.1| DNA mismatch repair protein MutS [Streptococcus salivarius 57.I]
Length = 852
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 2/210 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNVQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPVFDAIYTRIGASD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPP 871
P +++RA+ + V I +E+ P
Sbjct: 770 PADLLERADTILTQLEGETVTIQPQEKVSP 799
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYEDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|405377532|ref|ZP_11031473.1| DNA mismatch repair protein MutS [Rhizobium sp. CF142]
gi|397325969|gb|EJJ30293.1| DNA mismatch repair protein MutS [Rhizobium sp. CF142]
Length = 908
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 138/281 (49%), Gaps = 25/281 (8%)
Query: 575 EAGAKAKAKVLELLRGLS--SELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL 632
+AGA+A A V+++ GL+ +E Q LV S + I V + RR+ + P +
Sbjct: 582 KAGARALA-VIDVAAGLALLAEEQAYCRPLVDGSKMFAIEGGRHPVVEQALRRQSIGPFV 640
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS 692
+ NC LSP D +G+ ++LLTGPN GGKS+ LR +
Sbjct: 641 AN------NC----DLSPVS-DGKDGA----------IWLLTGPNMGGKSTFLRQNALIA 679
Query: 693 LLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVL 752
+L G VPA SA I D + + + D A G+S+F VEM E +I+ + RSLV+
Sbjct: 680 ILAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQASERSLVI 739
Query: 753 IDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 811
+DEI RGT T G IA + +E L C G+ +TH H + L K+ + M +
Sbjct: 740 LDEIGRGTATFDGLSIAWAAVEHLHEANRCRGLFATHFHELTVLSEKLARLSNATMRVKE 799
Query: 812 LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
DG + ++ G S + A+ G+P +++ RA D+
Sbjct: 800 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDV 840
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + I G PV
Sbjct: 32 QFIEIKANNPDSLLFYRMGDFYELFFEDALEASRALGITLTKRGQHMGQDIAMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+V+ P +A+ R S+ +
Sbjct: 92 ADDYLQKLIALGYRVAVCEQVEDPAEAKKRGSKSV 126
>gi|418027257|ref|ZP_12665929.1| MutS [Streptococcus thermophilus CNCM I-1630]
gi|354692238|gb|EHE92075.1| MutS [Streptococcus thermophilus CNCM I-1630]
Length = 852
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGAYVPADSVDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAARE----QPPPSI 873
P ++ RA+ + V+I +E Q P+I
Sbjct: 770 PTDLLNRADTILTQLEGETVVIQPQEKVLSQEKPAI 805
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|312873745|ref|ZP_07733790.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2052A-d]
gi|311090743|gb|EFQ49142.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2052A-d]
Length = 854
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANTALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|450034423|ref|ZP_21834378.1| DNA mismatch repair protein MutS [Streptococcus mutans M21]
gi|450110638|ref|ZP_21862212.1| DNA mismatch repair protein MutS [Streptococcus mutans SM6]
gi|449196526|gb|EMB97791.1| DNA mismatch repair protein MutS [Streptococcus mutans M21]
gi|449224638|gb|EMC24264.1| DNA mismatch repair protein MutS [Streptococcus mutans SM6]
Length = 849
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNGTKESQP 804
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|359409331|ref|ZP_09201799.1| DNA mismatch repair protein MutS [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676084|gb|EHI48437.1| DNA mismatch repair protein MutS [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 887
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 142/300 (47%), Gaps = 14/300 (4%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T ++ E ++ A +A A LEL L+ + + + A+ L +
Sbjct: 518 FTTTELSELEKQLSTAADRAVALELELFAELTDAVHRQSGQIAEAAHALACLDVAHSTAR 577
Query: 621 EGRRRKWVFPALKD-----IELDGANCLK--MNGLSPYWFDAAEGSAVHNTVDMQSLFLL 673
R + P L+D IE ++ + SP+ + + S N L+LL
Sbjct: 578 LAERHHYTRPFLRDDTTFQIEAGRHPVVEQMLTTSSPFIANDCQLSEQAN------LWLL 631
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ LR ++L GL VPAE A I D + + + D A G+S+F V
Sbjct: 632 TGPNMAGKSTYLRQNAHIAILAQAGLYVPAERAEIGIIDKLFSRVGASDDLARGQSTFMV 691
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGI 792
EM E +I+ +T +SLV++DEI RGT T G IA + +E L N C + +TH H +
Sbjct: 692 EMVETAAILNQSTDKSLVILDEIGRGTATWDGLAIAWACLEHLHNKNKCRTLFATHYHEL 751
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
SL +++ AM + G+ + ++ G +S AK G+P +IQRA L
Sbjct: 752 TSLQVQLDRLRIYAMQVKEWKGEIIFLHQVAAGAADKSYGVHVAKLAGLPTAVIQRAAGL 811
>gi|417846878|ref|ZP_12492862.1| DNA mismatch repair protein MutS [Streptococcus mitis SK1073]
gi|339457998|gb|EGP70551.1| DNA mismatch repair protein MutS [Streptococcus mitis SK1073]
Length = 844
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQMGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQGGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|331701278|ref|YP_004398237.1| DNA mismatch repair protein mutS [Lactobacillus buchneri NRRL
B-30929]
gi|329128621|gb|AEB73174.1| DNA mismatch repair protein mutS [Lactobacillus buchneri NRRL
B-30929]
Length = 862
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + ++ G VPA+ A +P FD I + + D G+
Sbjct: 602 SILLITGPNMSGKSTYMRQMALCVIMNQMGCFVPAKHAKLPVFDKIFTRIGAADDLISGQ 661
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + T SL+L DEI RGT T G +A +IIE + +NIG + ST
Sbjct: 662 STFMVEMKEANDAIENATPNSLILFDEIGRGTATYDGMALAQAIIEYVHNNIGAKTLFST 721
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L +K +G +G+ V K+ G +S AK G+PE ++
Sbjct: 722 HYHELTVLDESLKRLQNVHVGATESNGELVFLHKIQPGPADKSYGIHVAKLAGLPEGLLH 781
Query: 848 RAEDL 852
RA D+
Sbjct: 782 RANDI 786
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 48 MLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES--IPKAGCPV 102
M+Q+ K ++P L R+GDFYE DA + L R + +P G P
Sbjct: 10 MVQYQKIKDQYPDAFLFYRLGDFYEMFNEDAIKGSQLLELTLTNRSRNAANPVPMCGVPH 69
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ +D L GY V I E+++ P A+ R + PG+ G
Sbjct: 70 KAVQNYIDILVDQGYKVAICEQMEDPRLAKGMVKREVIQLVTPGTQVDVG 119
>gi|300706132|ref|XP_002995367.1| hypothetical protein NCER_101770 [Nosema ceranae BRL01]
gi|239604422|gb|EEQ81696.1| hypothetical protein NCER_101770 [Nosema ceranae BRL01]
Length = 920
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 7/191 (3%)
Query: 662 HNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSY 721
++ ++ Q + +LTG N GKS+ +R+ C ++L G V A P FD + M +
Sbjct: 725 NDYIEDQRILILTGSNMAGKSTFMRTFCLNTILFHMGCNVFASEFKCPVFDRLYSRMGAS 784
Query: 722 DSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 781
D+ G+S+F VE+ E +I+ TS+SLV++DE+ RGT T G IA +++ L NI C
Sbjct: 785 DNLVRGESTFMVELLETSNILRNATSKSLVIMDELGRGTSTKDGKSIAKAVLSYLQNINC 844
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKA--MGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
STH + SL N + M + + +KLV+GIC +S AK
Sbjct: 845 RVFFSTHYQNLVSL-----NNGFSTGFMNICIKNNIVIFLYKLVNGICEDSNGIHVAKLA 899
Query: 840 GVPETIIQRAE 850
GVPE I+ +AE
Sbjct: 900 GVPEEILLQAE 910
>gi|445370537|ref|ZP_21425879.1| DNA mismatch repair protein MutS [Streptococcus thermophilus MTCC
5460]
gi|445385384|ref|ZP_21427586.1| DNA mismatch repair protein MutS [Streptococcus thermophilus MTCC
5461]
gi|444751650|gb|ELW76367.1| DNA mismatch repair protein MutS [Streptococcus thermophilus MTCC
5461]
gi|444751665|gb|ELW76381.1| DNA mismatch repair protein MutS [Streptococcus thermophilus MTCC
5460]
Length = 852
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGAYVPADSVDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAARE----QPPPSI 873
P ++ RA+ + V+I +E Q P+I
Sbjct: 770 PTDLLNRADTILTQLEGETVVIQPQEKVSSQEKPAI 805
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|55822041|ref|YP_140482.1| DNA mismatch repair protein MutS [Streptococcus thermophilus
CNRZ1066]
gi|81676633|sp|Q5M1Z0.1|MUTS_STRT1 RecName: Full=DNA mismatch repair protein MutS
gi|55738026|gb|AAV61667.1| DNA mismatch repair protein [Streptococcus thermophilus CNRZ1066]
Length = 852
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGAYVPADSVDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAARE----QPPPSI 873
P ++ RA+ + V+I +E Q P+I
Sbjct: 770 PTDLLNRADTILTQLEGETVVIQPQEKVLSQEKPAI 805
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|350419676|ref|XP_003492265.1| PREDICTED: probable DNA mismatch repair protein Msh6-like [Bombus
impatiens]
Length = 1129
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 149/331 (45%), Gaps = 24/331 (7%)
Query: 539 EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTK 598
+ QIK++ + + ++ G + + T + +E L R A + +L R + ++ K
Sbjct: 774 DSQIKKIGAGYELQSQRKGYKRYYTAETKELLSRQINAEEHRDKVLKDLNRRIFAKFSEK 833
Query: 599 INILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD-------IEL-DGAN-CLKMNGLS 649
++ A L + L + P + D I++ DG + C+ +
Sbjct: 834 YDMWNMAVYKLSVLDVLISLAEYALSGDMCIPEVNDGTDERVFIDIRDGWHPCIISDTFI 893
Query: 650 PYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 709
P + + T + S +LTGPN GGKS+L+R + +++ G VPA S +
Sbjct: 894 P-------NNTLLGTENSASFMILTGPNMGGKSTLMRQVALLTIMTQIGSYVPASSCRLT 946
Query: 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 769
D I + + D G+S+F VE+SE +I+ T SLVL+DE+ RGT T GT IA
Sbjct: 947 LVDRIFTRLGANDDILAGQSTFLVELSETAAILQHATPYSLVLLDELGRGTSTYDGTAIA 1006
Query: 770 GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG----TEYLDGQTVPT----WK 821
S++ L + C + STH H + K M E D + T +K
Sbjct: 1007 ASVVNALTKLNCRTLFSTHYHSLVEDYKNTKEITLAHMACMVENEEQDEVSQETVTFLYK 1066
Query: 822 LVDGICRESLAFETAKREGVPETIIQRAEDL 852
L +G C +S F A+ GVP I RA ++
Sbjct: 1067 LSEGACPKSYGFNAARLAGVPSVITNRAHEI 1097
>gi|410667733|ref|YP_006920104.1| DNA mismatch repair protein MutS [Thermacetogenium phaeum DSM
12270]
gi|409105480|gb|AFV11605.1| DNA mismatch repair protein MutS [Thermacetogenium phaeum DSM
12270]
Length = 881
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 5/201 (2%)
Query: 657 EGSAVHNTV----DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
EGS V N + D + +LTGPN GKS+ +R + L+ CG +VPA+ A I D
Sbjct: 601 EGSFVPNDLEIGEDADRILILTGPNMAGKSTYMRQMALIVLMAQCGSLVPADEAEIGIVD 660
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
+ + ++D G+S+F +EM+E+ IV T RS +++DEI RGT T G IA +I
Sbjct: 661 RVFVRAGAFDDLGKGQSTFMMEMNEVSYIVHHATERSFIVLDEIGRGTGTFDGIGIAWAI 720
Query: 773 IETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
IE + D IG I +TH H + L + A ++ + V K+V G +S
Sbjct: 721 IEYIHDKIGARTIFATHYHQLTQLADILHGVANCSVAVQEEGQNIVFLHKVVPGGTDKSY 780
Query: 832 AFETAKREGVPETIIQRAEDL 852
+ A+ +PE ++QRA+++
Sbjct: 781 GIQVARLAHLPEELVQRAQEV 801
>gi|95929133|ref|ZP_01311877.1| DNA mismatch repair protein MutS [Desulfuromonas acetoxidans DSM
684]
gi|95134631|gb|EAT16286.1| DNA mismatch repair protein MutS [Desulfuromonas acetoxidans DSM
684]
Length = 869
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
V + L ++TGPN GKS+ +R + +L+ G +VPA+SA I D I + +
Sbjct: 605 VQLDTETDQLLIITGPNMAGKSTFMRQVALITLMAQVGSLVPAKSAHIGVVDRIFTRVGA 664
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---D 777
D+ A G+S+F VEMSE +I+ TSRSL+++DEI RGT T G IA ++ E L D
Sbjct: 665 SDNLARGQSTFMVEMSETANILNHATSRSLIILDEIGRGTSTFDGVSIAWAVAEYLHDND 724
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
+ + +TH H + L L + A + + Q V K+V G S + A+
Sbjct: 725 QVAAKTLFATHYHELTDLALTRERIANFNIAVREWNDQIVFLRKIVAGGASHSYGIQVAR 784
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA+++
Sbjct: 785 LAGLPDAVIGRAKEV 799
Score = 43.1 bits (100), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++P +L R+GDFYE DA L + +P G P +
Sbjct: 10 QYLEIKSQYPDAILFFRLGDFYEMFLDDAVTAARILDITLTSRNKNSDDEVPLCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPE 164
+ + L +G+ V + E+V+ P + R + PG + ++ D+ P+
Sbjct: 70 AQPYIAKLVASGHKVAVCEQVEDPKSVKGIVKRDVVRVVTPG-------MVLESDMLTPD 122
Query: 165 P---MPVIGVSRSAKGYCIISI 183
+ V+ SA G I+ I
Sbjct: 123 ENNFLMVLAHCDSAYGVAIVDI 144
>gi|116627015|ref|YP_819634.1| DNA mismatch repair protein MutS [Streptococcus thermophilus LMD-9]
gi|122268380|sp|Q03MY4.1|MUTS_STRTD RecName: Full=DNA mismatch repair protein MutS
gi|116100292|gb|ABJ65438.1| DNA mismatch repair protein MutS [Streptococcus thermophilus LMD-9]
Length = 852
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGAYVPADSVDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAARE----QPPPSI 873
P ++ RA+ + V+I +E Q P+I
Sbjct: 770 PTDLLNRADTILTQLEGETVVIQPQEKVSSQEKPAI 805
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|78189282|ref|YP_379620.1| DNA mismatch repair protein MutS [Chlorobium chlorochromatii CaD3]
gi|90109843|sp|Q3AQZ8.1|MUTS_CHLCH RecName: Full=DNA mismatch repair protein MutS
gi|78171481|gb|ABB28577.1| DNA mismatch repair protein MutS [Chlorobium chlorochromatii CaD3]
Length = 873
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 108/206 (52%), Gaps = 3/206 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q++ ++TGPN GKSS LR I LL G VPAESAS+ D I + + D+
Sbjct: 619 DKQTMLIITGPNMAGKSSYLRQIGLIVLLAQAGSFVPAESASLGVVDRIFTRVGASDNLT 678
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCLGI 784
G+S+F VEM+E +I+ T RSL+L+DEI RGT T G IA S+ E + IG +
Sbjct: 679 SGESTFLVEMNEAANILNNATERSLLLLDEIGRGTSTFDGMSIAWSMCEYIVHTIGAKTL 738
Query: 785 VSTHLHGIFSLPLKIKNAA-YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+TH H + L ++K Y A E + + + K+V G S E AK G+P
Sbjct: 739 FATHYHELAELEERLKGVVNYNATVVETAE-RVIFLRKIVRGATDNSYGIEVAKMAGMPN 797
Query: 844 TIIQRAEDLYIACGVNCVMIAAREQP 869
+I RA ++ V I ++ P
Sbjct: 798 DVISRAREILAGLEKRDVEIPRQKAP 823
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 35 KNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES 94
++G+ + + + L+ K ++P +LL RVGDFYE D I V A LN R
Sbjct: 5 QSGTKEHSPMMRQYLEVKERYPDYLLLFRVGDFYETF-FDDAITVSTA-LNIVLTKRTAD 62
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLV 154
IP AG P + L + GY V + ++V+ P A+ R I+ PG Y L+
Sbjct: 63 IPMAGFPYHASEGYIAKLIKKGYKVAVCDQVEDPADAKGIVRREITDIVTPGVTYSDKLL 122
Query: 155 GIDHD 159
H+
Sbjct: 123 DDRHN 127
>gi|419781976|ref|ZP_14307787.1| DNA mismatch repair protein MutS [Streptococcus oralis SK610]
gi|383183617|gb|EIC76152.1| DNA mismatch repair protein MutS [Streptococcus oralis SK610]
Length = 844
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLINVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPGELLARADKI 780
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|340778935|ref|ZP_08698878.1| DNA mismatch repair protein MutS [Acetobacter aceti NBRC 14818]
Length = 828
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 107/206 (51%), Gaps = 7/206 (3%)
Query: 654 DAAEGSAVHNTVDMQSL------FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707
+AA GS V T + SL LLTGPN GKS+ LR A +L + GL VPA+SA
Sbjct: 541 EAALGSGVRFTANGCSLAPDHRVMLLTGPNMAGKSTFLRQNALAVILALAGLPVPAKSAH 600
Query: 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTC 767
I D + + + D A G+S+F VEM+E +I+ RSLV++DEI RGT T G
Sbjct: 601 IGIVDKLFSRVGAADDLARGRSTFMVEMTETAAILNQAGPRSLVVVDEIGRGTSTLDGLS 660
Query: 768 IAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGI 826
IA +++E + + C I +TH H + L + + M GQ V +++ G
Sbjct: 661 IAWAVLEAMHSTLRCRTIFATHFHELAELSGSLPRLSPHTMAVRDWKGQVVFLHEVIPGS 720
Query: 827 CRESLAFETAKREGVPETIIQRAEDL 852
R+S AK GVP ++ RA L
Sbjct: 721 ARKSWGVHVAKLAGVPMPVVDRASRL 746
>gi|363897251|ref|ZP_09323790.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB7]
gi|361958748|gb|EHL12045.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB7]
Length = 902
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 1/196 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKS+ +R + LL G VPA+ A +P D I + + D A G
Sbjct: 613 QEIAIITGPNMAGKSTYMRQVALIVLLSAIGSFVPAKEAELPICDRIFTRVGASDDLAQG 672
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEMSE+ +I+ T +SL+++DEI RGT T G IA +++E + +I + +
Sbjct: 673 QSTFMVEMSEVANILRNATKQSLLILDEIGRGTSTFDGLSIAWAVVEYIARHIQAKTLFA 732
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L K+ N + DG+ K++ G ES + AK GVPE ++
Sbjct: 733 THYHELTELEGKLNNVKNYCIAVSKKDGEISFLRKIIPGGADESYGIDVAKLAGVPEGVL 792
Query: 847 QRAEDLYIACGVNCVM 862
RA ++ N M
Sbjct: 793 SRAREISAFLSDNDFM 808
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 39 LKEGTLNWEMLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRP 92
+ E L+ M Q+ K ++P +L R+GDFYE DA L G GL
Sbjct: 1 MDESKLSPMMRQYLDSKKEYPDALLFYRIGDFYEMFFDDALTASRELDLVLTGKDCGLE- 59
Query: 93 ESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
E P G P + L GY V I E+V+ P +A+ R I PG+
Sbjct: 60 ERAPMCGVPYHAADSYVSKLVSKGYKVAIGEQVEDPKKAKGLVKREIIKVITPGT 114
>gi|448425960|ref|ZP_21583068.1| DNA mismatch repair protein MutS [Halorubrum terrestre JCM 10247]
gi|445679921|gb|ELZ32374.1| DNA mismatch repair protein MutS [Halorubrum terrestre JCM 10247]
Length = 978
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 3/202 (1%)
Query: 657 EGSAVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
E S V N D+ S+ ++TGPN GKS+ +RS+ A +L G VPA++A++P FD +
Sbjct: 652 EESFVPNDADLPRGSVAVITGPNMSGKSTYMRSVALAVVLAQTGSFVPAQAATLPVFDRL 711
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D A G+S+F EMSE+ I+ + SLVL+DE+ RGT T G IA + E
Sbjct: 712 FTRVGASDDIAGGQSTFMREMSELTEILHDADADSLVLLDEVGRGTATTDGRAIARAAAE 771
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH HG+ L + + DG ++V G S
Sbjct: 772 FLHDELGATALFATHYHGLTDLADERERVFNLHFTATREDGDVTFLHRVVPGASSSSYGV 831
Query: 834 ETAKREGVPETIIQRAEDLYIA 855
E A+ GVP ++ RA DL A
Sbjct: 832 EVAELAGVPGPVVDRARDLVAA 853
>gi|363899230|ref|ZP_09325740.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB1]
gi|395209621|ref|ZP_10398715.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB8]
gi|361959067|gb|EHL12363.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB1]
gi|394705252|gb|EJF12781.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB8]
Length = 902
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 1/196 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKS+ +R + LL G VPA+ A +P D I + + D A G
Sbjct: 613 QEIAIITGPNMAGKSTYMRQVALIVLLSAIGSFVPAKEAELPICDRIFTRVGASDDLAQG 672
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEMSE+ +I+ T +SL+++DEI RGT T G IA +++E + +I + +
Sbjct: 673 QSTFMVEMSEVANILRNATKQSLLILDEIGRGTSTFDGLSIAWAVVEYIARHIQAKTLFA 732
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L K+ N + DG+ K++ G ES + AK GVPE ++
Sbjct: 733 THYHELTELEGKLNNVKNYCIAVSKKDGEISFLRKIIPGGADESYGIDVAKLAGVPEGVL 792
Query: 847 QRAEDLYIACGVNCVM 862
RA ++ N M
Sbjct: 793 SRAREISAFLSDNDFM 808
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 39 LKEGTLNWEMLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRP 92
+ E L+ M Q+ K ++P +L R+GDFYE DA + L G GL
Sbjct: 1 MDESKLSPMMRQYLDSKKEYPDALLFYRIGDFYEMFFDDALTASKELDLVLTGKDCGLE- 59
Query: 93 ESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
E P G P + L GY V I E+V+ P +A+ R I PG+
Sbjct: 60 ERAPMCGVPYHAADSYVSKLVSKGYKVAIGEQVEDPKKAKGLVKREIIKVITPGT 114
>gi|399923769|ref|ZP_10781127.1| DNA mismatch repair protein MutS [Peptoniphilus rhinitidis 1-13]
Length = 869
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 7/189 (3%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + ++TGPN GKS+ +R + +++ G VPAESA I D I + + D+ + G
Sbjct: 620 EMIHIITGPNMAGKSTYMRQVALITIMSHIGSFVPAESADISLVDRIFTRIGASDNLSKG 679
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E+ I+ TS+SL+++DE+ RGT T G IA +I+E + +NI + +
Sbjct: 680 QSTFMVEMKEVADIIENATSKSLLILDEVGRGTSTFDGLAIANAIVEYIAENIKAKTLFA 739
Query: 787 THLHGIFSLPLK---IKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
TH H + +L K IKN + + D + K+++G S + AK G+
Sbjct: 740 THYHELVNLEEKYDCIKNL---TIAVDRQDDDIIFLRKIINGFTNNSYGIDVAKLAGIDN 796
Query: 844 TIIQRAEDL 852
II RA+++
Sbjct: 797 VIINRAKEV 805
>gi|395788226|ref|ZP_10467801.1| DNA mismatch repair protein mutS [Bartonella birtlesii LL-WM9]
gi|395409559|gb|EJF76147.1| DNA mismatch repair protein mutS [Bartonella birtlesii LL-WM9]
Length = 914
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 144/302 (47%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI--GKALFAH 618
F+T ++ + R A A LE+ L +E+ +++ + A+ L I AH
Sbjct: 540 FTTTELADLESRISHAANHALTLELEIFDTLVNEIIEQVDFIRKAAEALAILDVSVALAH 599
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R + +L G + L+ P+ + + SA N +++
Sbjct: 600 LAEEQGYCRPIIDHSLTFRITAGRHPVVEQALRKQAAEPFVANNCDLSAQENH-QYAAIW 658
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 659 LLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGVVDRLFSRVGASDDLARGRSTF 718
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ + SLV++DEI RGT T G IA + +E L + C I++TH H
Sbjct: 719 MMEMVETATILNHASHHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNHCRAILATHFH 778
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L K+ M + DG V ++ G S + AK G+P T+I RA
Sbjct: 779 EMTALTQKLNRLHNVTMKVKNWDGDVVFLHEVAPGAADRSYGVQVAKLAGLPATVITRAT 838
Query: 851 DL 852
D+
Sbjct: 839 DV 840
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFNDAVEAAQALGITLTTRGKHLGEDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+ + P +A+ R S+ +
Sbjct: 92 ADDYLQKLIACGYRVAVCEQTEDPAEAKKRGSKSV 126
>gi|212702797|ref|ZP_03310925.1| hypothetical protein DESPIG_00827 [Desulfovibrio piger ATCC 29098]
gi|212673659|gb|EEB34142.1| DNA mismatch repair protein MutS [Desulfovibrio piger ATCC 29098]
Length = 906
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 146/302 (48%), Gaps = 19/302 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-QTKINILVFASMLLVIGKALFA 617
E F+T ++E E A K K +L + L + + Q + IL A ++ + +
Sbjct: 518 ERFTTPALKELEEALLSASEKRKTLEYQLYQDLRTFMAQQRERILHMADVIAHLD--YWQ 575
Query: 618 HVSE-GRRRKWVFPALKDIELDG-ANCLKMNGLSPYWFDAAEGSA--VHNTVDMQS---L 670
++E GRR W P ELDG A+ L G P +A G+A V N + + + L
Sbjct: 576 SLAEVGRRNGWCRP-----ELDGSADILIEEGRHPV-VEAMIGTANFVPNNITLDAKRRL 629
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
LLTGPN GKS++LR + LL G MVPA A + D + + + D+ A G+S+
Sbjct: 630 CLLTGPNMAGKSTVLRQVAIICLLAQTGSMVPATRARLGLVDRLFSRVGASDNLAQGQST 689
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG---CLGIVST 787
F VEM E I+ T RSLV++DEI RGT T G +A +++E L + +T
Sbjct: 690 FMVEMMETARILRQATKRSLVILDEIGRGTSTYDGVALAWAVVEDLAARAHGEVRTLFAT 749
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L ++ + G + KLV G S E A+ GVP ++Q
Sbjct: 750 HYHELTALEKRVPGVFTMNIAIREYGGDILFLHKLVPGPADRSYGVEVARLAGVPAPVVQ 809
Query: 848 RA 849
RA
Sbjct: 810 RA 811
>gi|337286407|ref|YP_004625880.1| DNA mismatch repair protein MutS [Thermodesulfatator indicus DSM
15286]
gi|335359235|gb|AEH44916.1| DNA mismatch repair protein MutS [Thermodesulfatator indicus DSM
15286]
Length = 857
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
GS V N+V + + ++TGPN GKS++LR +LL G VPAE A+I D
Sbjct: 597 GSFVPNSVKLDLKENVVLVITGPNMAGKSTILRQTALITLLAHVGSFVPAEEATIGLCDR 656
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D + G+S+F VEMSE +I+ TSRSLV++DEI RGT T G IA ++
Sbjct: 657 IFSRIGASDQLSRGRSTFMVEMSECANILHQATSRSLVILDEIGRGTSTYDGLAIAWAVA 716
Query: 774 ETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
E L + + +TH H + L + + + + Q + ++L+ G ES
Sbjct: 717 EFLHEKKIMTLFATHYHELVELAGEYPGIKNFNVAVKTFEDQIIFLYRLLPGPASESYGV 776
Query: 834 ETAKREGVPETIIQRAEDL 852
+ A G+P+ +I RA+D+
Sbjct: 777 QVAALAGLPKEVIARAKDI 795
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+P +L R+GDFYE DA + +++ A + G + E +P G P
Sbjct: 10 QYLEIKEKYPDAILFFRLGDFYEMFFEDAELASRILDIALTSRDKGTK-EKVPMCGVPAA 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
N ++ L GY V I E+V+ P QA+ R + PG
Sbjct: 69 NAAHYINRLVSAGYKVAICEQVEDPKQAKGIVKREVIRVVTPG 111
>gi|14577935|gb|AAK68860.1|AF091119_1 DNA mismatch repair protein HexA [Lactococcus lactis]
Length = 841
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 10/235 (4%)
Query: 622 GRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLLTGP 676
++ ++ P L D G+ +++ G +A G+ V N +++ + L+TGP
Sbjct: 548 AEKQGYIRPTLTD----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLITGP 603
Query: 677 NGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 736
N GKS+ +R ++ G VPAE+A++P FDAI + + D+ G+S+F VEMS
Sbjct: 604 NMSGKSTYMRQFALTVIMAQIGSFVPAETANLPIFDAIFTRIGASDNLISGESTFMVEMS 663
Query: 737 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSL 795
E + +SRSL++ DE+ RGT T G +A +IIE + D+IG + +TH H + L
Sbjct: 664 EANHAIQKASSRSLIIFDELGRGTATYDGMALAQAIIEYVHDHIGAKTLFATHYHELTDL 723
Query: 796 PLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ + + T +G K+ +G +S AK G+P+ +++RA+
Sbjct: 724 DEALDHLDNVHVATLEQNGNVTFLHKITEGPADKSYGIHVAKIAGLPQPLLERAD 778
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AAAEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|357637688|ref|ZP_09135563.1| DNA mismatch repair protein MutS [Streptococcus macacae NCTC 11558]
gi|357586142|gb|EHJ53345.1| DNA mismatch repair protein MutS [Streptococcus macacae NCTC 11558]
Length = 849
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 107/210 (50%), Gaps = 5/210 (2%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + A ++ G V A+ AS+P FDAI + + D G+
Sbjct: 596 SIQLITGPNMSGKSTYMRQLALAVIMAQIGSFVSADLASLPIFDAIFTRIGAADDLISGQ 655
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + + +SL+L DE+ RGT T G +A +IIE + D IG + +T
Sbjct: 656 STFMVEMMEANQAIKKASRQSLILFDELGRGTATYDGMALAQAIIEHIHDRIGAKTMFAT 715
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ N + T DG+ K+ DG +S AK G+P+ ++
Sbjct: 716 HYHELTDLSTKLTNLVNVHVATLEKDGEVTFLHKITDGPADKSYGIHVAKIAGLPDELLS 775
Query: 848 RAE----DLYIACGVNCVMIAAREQPPPSI 873
A+ DL + V A+ + S+
Sbjct: 776 HADHILFDLESSSQAVSVQTKAKAEQNHSV 805
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGL 90
+ N L G + L K +P LL R+GDFYE + A L+E + L
Sbjct: 1 MTNDKLSPGMKQY--LDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIS-LTSRNKN 57
Query: 91 RPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+P AG P + +Q +D L GY V I E+++ P A R + PG+
Sbjct: 58 ADNPVPMAGVPYHSAQQYIDILVDLGYKVAIAEQMEDPKTAVGVVKREVIQVVTPGT 114
>gi|386343654|ref|YP_006039818.1| mismatch repair ATPase [Streptococcus thermophilus JIM 8232]
gi|339277115|emb|CCC18863.1| mismatch repair ATPase (MutS family) [Streptococcus thermophilus
JIM 8232]
Length = 852
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGAYVPADSVDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAARE----QPPPSI 873
P ++ RA+ + V+I +E Q P+I
Sbjct: 770 PTDLLNRADTILTQLEGETVVIQPQEKVSSQEKPAI 805
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|335045167|ref|ZP_08538190.1| DNA mismatch repair protein MutS [Oribacterium sp. oral taxon 108
str. F0425]
gi|333758953|gb|EGL36510.1| DNA mismatch repair protein MutS [Oribacterium sp. oral taxon 108
str. F0425]
Length = 907
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 1/196 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKS+ +R + LL G VPA+ A +P D I + + D A G
Sbjct: 613 QEIAIITGPNMAGKSTYMRQVALIVLLSAIGSFVPAKEAELPICDRIFTRVGASDDLAQG 672
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEMSE+ +I+ T +SL+++DEI RGT T G IA +++E + +I + +
Sbjct: 673 QSTFMVEMSEVANILRNATKQSLLILDEIGRGTSTFDGLSIAWAVVEYIARHIQAKTLFA 732
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L K+ N + DG+ K++ G ES + AK GVPE ++
Sbjct: 733 THYHELTELEGKLNNVKNYCIAVSKKDGEISFLRKIIPGGADESYGIDVAKLAGVPEGVL 792
Query: 847 QRAEDLYIACGVNCVM 862
RA ++ N M
Sbjct: 793 SRAREISAFLSDNDFM 808
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 39 LKEGTLNWEMLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRP 92
+ E L+ M Q+ K ++P +L R+GDFYE DA + L G GL
Sbjct: 1 MDESKLSPMMRQYLDSKKEYPDALLFYRIGDFYEMFFDDALTASKELDLVLTGKDCGL-E 59
Query: 93 ESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
E P G P + L GY V I E+V+ P +A+ R I PG+
Sbjct: 60 ERAPMCGVPYHAADSYVSKLVSKGYKVAIGEQVEDPKKAKGLVKREIIKVITPGT 114
>gi|347731018|ref|ZP_08864125.1| DNA mismatch repair protein MutS [Desulfovibrio sp. A2]
gi|347520219|gb|EGY27357.1| DNA mismatch repair protein MutS [Desulfovibrio sp. A2]
Length = 947
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 144/305 (47%), Gaps = 19/305 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKA---KVLELLRGLSSELQTKINILVFASMLLVIGKAL 615
E F+T +++E E+ A + K+ K+ + LR SE + ++ +F + LL
Sbjct: 546 ERFTTPRLKELEEKLVSASDRRKSLEYKLFQKLRETVSEARPRV---LFMADLLAGFDYW 602
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTV---DMQSL 670
+ RR W P L + L G P +A +GSA + N + D + L
Sbjct: 603 QSLAETARRWNWTRPVLTQ----DTDVLIREGRHPV-VEAMQGSANFIPNDLRMDDARRL 657
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS++LR LL G VPA A + D + + + D+ A G+S+
Sbjct: 658 LLITGPNMAGKSTVLRQTAIICLLAQMGSFVPAREARLGIADRVFSRVGASDNLAQGQST 717
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG---CLGIVST 787
F VEM E I+ RSLV++DEI RGT T G +A +++E L + +T
Sbjct: 718 FMVEMMETARILRQAGKRSLVILDEIGRGTSTFDGLALAWAVVEELARRAGGTIRTLFAT 777
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L +I + G+ V +LV G S E A+ GVP+ ++Q
Sbjct: 778 HYHELTALEGRIPGVHNMNIAIREWGGEIVFLRRLVPGPSDRSYGIEVARLAGVPQPVVQ 837
Query: 848 RAEDL 852
RA +L
Sbjct: 838 RAREL 842
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA-----CILVEYAGLNPFGGLRPESIPKAGCP 101
+ L+ K P +LL R+GDFYE DA + + NP LR +P G P
Sbjct: 38 QYLRIKEDHPDALLLYRMGDFYEMFFDDAETAARELQIALTCRNPNADLR---VPMCGVP 94
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ + L G+ V + ++++ P +A+ R ++ PG+
Sbjct: 95 HHSVEGYITQLLEKGFKVALCDQIEDPREAKGLVKRAVTRVLTPGT 140
>gi|296327904|ref|ZP_06870440.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296155038|gb|EFG95819.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 896
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 31/301 (10%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 529 LKEYEEKVITAKSKIEALEYELFKQLTSEIKGHIDSLYKLANRIANLDIV---SNFAHIA 585
Query: 621 EGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLT 674
+ +V P + D +E+ G + L P G+ V N + D +L +LT
Sbjct: 586 --TKNSYVKPEIGDGDILEIKGGRHPIVESLIP------SGTYVKNDIILDDKNNLIILT 637
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ ++ I ++ G V A+ A IP D I + + D G+S+F +E
Sbjct: 638 GPNMSGKSTYMKQIALNIIMAHIGSYVAADCAKIPIVDKIFTRVGASDDLLTGQSTFMLE 697
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF 793
M+E+ SI+ T++S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 698 MTEVASILNNATNKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELT 757
Query: 794 SLPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRAED 851
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 758 ELEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSNK 815
Query: 852 L 852
+
Sbjct: 816 I 816
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP--ESIPKAGCPVVNLRQ 107
+ K ++ E+L+ R+GDFYE DA I + GL R + +P AG P ++
Sbjct: 32 KIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNREKGQDVPLAGVPYHSVAS 91
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYSV I ++V+ P A R ++ PG+
Sbjct: 92 YIAKLVEKGYSVAICDQVEDPKSATGIVKREVTRVITPGT 131
>gi|126730094|ref|ZP_01745906.1| DNA mismatch repair protein [Sagittula stellata E-37]
gi|126709474|gb|EBA08528.1| DNA mismatch repair protein [Sagittula stellata E-37]
Length = 877
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 142/307 (46%), Gaps = 24/307 (7%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILV-----FASMLLVIGKAL 615
F+T ++ E R AGA+A A L L E+ + +L A + L +G A
Sbjct: 507 FTTTELSELETRILNAGAEAAAIEKRLYDTLRHEILDRAGVLAEVAFALAEIDLALGLAE 566
Query: 616 FAHVSEGRRRKWVFPALKD---IELDGAN------CLKMNGLSPYWFDAAEGSAVHNTVD 666
A R+R W P + D +++ L+ G P+ A A+ D
Sbjct: 567 LA-----RQRDWCLPKVDDSRAFDIEAGRHPVVEAALQKAG-EPFI---ANDCALSAEGD 617
Query: 667 MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPAD 726
S+ LLTGPN GKS+ LR +LL G VPA SA I I + + D A
Sbjct: 618 AASVRLLTGPNMAGKSTYLRQNALIALLAQIGSYVPARSAHIGVVSQIFSRVGASDDLAR 677
Query: 727 GKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL-GIV 785
G+S+F VEM E +I+ R+LV++DEI RGT T G IA + +E L + + G+
Sbjct: 678 GRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYDGLSIAWATLEHLHEVNRVRGLF 737
Query: 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
+TH H + L K+ + + DG + ++ DG S + A+ G+P+ +
Sbjct: 738 ATHYHELTVLAGKLPGVKNATVAVKEWDGDVIFLHEVHDGAADRSYGVQVAQLAGLPKAV 797
Query: 846 IQRAEDL 852
I RA D+
Sbjct: 798 ITRARDV 804
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+++P +L R+GDFYE DA E L G + IP G PV
Sbjct: 10 QYLEIKAQYPDALLFYRMGDFYEMFFDDAVAASEALDIALTKRGKHDGDDIPMCGVPVHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L R G+ V + E+++ P +A+ R
Sbjct: 70 AEGYLLTLIRKGFRVAVGEQLESPEEAKKR 99
>gi|312875171|ref|ZP_07735184.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2053A-b]
gi|311089278|gb|EFQ47709.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2053A-b]
Length = 854
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA++P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAALPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|448484950|ref|ZP_21606336.1| DNA mismatch repair protein MutS [Halorubrum arcis JCM 13916]
gi|445819292|gb|EMA69139.1| DNA mismatch repair protein MutS [Halorubrum arcis JCM 13916]
Length = 982
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 3/202 (1%)
Query: 657 EGSAVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
E S V N D+ S+ ++TGPN GKS+ +RS+ A +L G VPA++A++P FD +
Sbjct: 652 EESFVPNDADLPRGSVAVITGPNMSGKSTYMRSVALAVVLAQTGSFVPAQAATLPVFDRL 711
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D A G+S+F EMSE+ I+ + SLVL+DE+ RGT T G IA + E
Sbjct: 712 FTRVGASDDIAGGQSTFMREMSELTEILHDADADSLVLLDEVGRGTATTDGRAIARAAAE 771
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH HG+ L + + DG ++V G S
Sbjct: 772 FLHDELGATALFATHYHGLTDLADERERVFNLHFTATREDGDVTFLHRVVPGASSSSYGV 831
Query: 834 ETAKREGVPETIIQRAEDLYIA 855
E A+ GVP ++ RA DL A
Sbjct: 832 EVAELAGVPGPVVDRARDLVAA 853
>gi|365858301|ref|ZP_09398245.1| DNA mismatch repair protein MutS [Acetobacteraceae bacterium
AT-5844]
gi|363714385|gb|EHL97900.1| DNA mismatch repair protein MutS [Acetobacteraceae bacterium
AT-5844]
Length = 888
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 103/205 (50%), Gaps = 4/205 (1%)
Query: 655 AAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF 711
A + V N D+ Q L LLTGPN GKS+ LR ++L GL VPAESA I
Sbjct: 616 AKRAAFVPNDADLSPGQRLCLLTGPNMAGKSTFLRQNAIMAVLAQAGLFVPAESARIGLV 675
Query: 712 DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGS 771
D + + + D A G+S+F VEM+E +I+ T+ SLV++DE+ RGT T G I +
Sbjct: 676 DRLFSRVGAADDIAGGRSTFMVEMTETAAILNQATASSLVVLDEVGRGTATWDGLAIGWA 735
Query: 772 IIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
++E L D I C I +TH H + +L K+ M G+ V + G S
Sbjct: 736 VLEALHDRIRCRAIFATHFHELTALTGKLPELTPATMKVREHKGEVVFLHLVAPGASERS 795
Query: 831 LAFETAKREGVPETIIQRAEDLYIA 855
AK GVP ++ RA + A
Sbjct: 796 WGLHVAKLAGVPREVVTRATAVLAA 820
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPF--GGLRPESIPKAGCPVVNLRQTL 109
+++ P ++ R+GDF+E DA + GL G R E IP AG PV L L
Sbjct: 29 RAQHPDALVFFRMGDFFELFFEDAHRAADLLGLAVAHRGEHRGEPIPMAGVPVHALEGYL 88
Query: 110 DDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L R G+ V I ++ + P QA++RK+ I
Sbjct: 89 ARLIRLGFRVAICDQRETPEQAKARKAPTI 118
>gi|417937045|ref|ZP_12580351.1| DNA mismatch repair protein MutS [Streptococcus infantis X]
gi|343399487|gb|EGV12009.1| DNA mismatch repair protein MutS [Streptococcus infantis X]
Length = 844
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 4/192 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMDEDTSIQLITGPNMSGKSTYMRQLAITAVMAQMGSYVPAESARLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + + T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAINHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLEASLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAE 850
G+P +++RA+
Sbjct: 767 AGLPADLLKRAD 778
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLVERGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|421451444|ref|ZP_15900805.1| DNA mismatch repair protein mutS [Streptococcus salivarius K12]
gi|421453480|ref|ZP_15902836.1| DNA mismatch repair protein mutS [Streptococcus salivarius K12]
gi|400181789|gb|EJO16056.1| DNA mismatch repair protein mutS [Streptococcus salivarius K12]
gi|400181875|gb|EJO16137.1| DNA mismatch repair protein mutS [Streptococcus salivarius K12]
Length = 852
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 2/220 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYV 881
P +++RA+ + V I +E+ P A+ +V
Sbjct: 770 PTDLLERADTILTQLEGETVAIQPQEKVLPQEKPATETHV 809
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQSYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|418634041|ref|ZP_13196439.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU129]
gi|420189481|ref|ZP_14695455.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM037]
gi|420204218|ref|ZP_14709778.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM015]
gi|374838033|gb|EHS01590.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU129]
gi|394262031|gb|EJE06816.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM037]
gi|394274232|gb|EJE18657.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM015]
Length = 873
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 122/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + GQ ++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHQDTDNQRTVPSYNDFGQIEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIVTPGT--VMDQNGMD 120
>gi|386001033|ref|YP_005919332.1| DNA mismatch repair protein MutS [Methanosaeta harundinacea 6Ac]
gi|357209089|gb|AET63709.1| DNA mismatch repair protein MutS [Methanosaeta harundinacea 6Ac]
Length = 893
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 111/213 (52%), Gaps = 15/213 (7%)
Query: 650 PYWFDAAEGSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES 705
P A G V N VD+ + +LTGPN GKS+ +R I A +L G VPA
Sbjct: 588 PILERAMRGGFVANDVDLDGRSNRVIILTGPNMAGKSTYMRQIALAIILAQIGSFVPAAF 647
Query: 706 ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKG 765
ASI D I + +YD + G+S+F +EM+E+ I+++ TS+SL+L+DEI RGT T G
Sbjct: 648 ASISPVDRIFTRVGAYDDLSAGQSTFMIEMTELAKILSSATSKSLILLDEIGRGTSTFDG 707
Query: 766 TCIAGSIIETLDN-IGCLGIVSTHLHGIFSLP-----LKIKNAAYKAMGTEYLDGQTVPT 819
IA S+ E + N + + +TH H + L +K N A K G L +TV
Sbjct: 708 LAIAWSVTEHIHNRVRGKAVFATHYHQLTQLAGVLPGVKNYNMAVKEEGETVLFLRTV-- 765
Query: 820 WKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
V G S AK GVPE ++ RA+++
Sbjct: 766 ---VPGATDRSYGIHVAKLAGVPEAVVARAKEI 795
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES---IPKAGCPVVNLRQTLDDLTRN 115
+LL R+GDFYE G DA I + + + IP AG P L L L
Sbjct: 22 LLLFRMGDFYETFGPDAEIAARVLNITLTSRQKDKEGNRIPLAGIPHHALDAYLPKLVAA 81
Query: 116 GYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
GY V I E+V+ P +A+ R I PG+
Sbjct: 82 GYKVAICEQVEDPRKAKGLVKREIIRVITPGT 113
>gi|385263093|ref|ZP_10041187.1| DNA mismatch repair protein MutS [Streptococcus sp. SK643]
gi|385188631|gb|EIF36109.1| DNA mismatch repair protein MutS [Streptococcus sp. SK643]
Length = 844
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQMGSYVPAESACLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKQQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEKGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|410096844|ref|ZP_11291829.1| DNA mismatch repair protein mutS [Parabacteroides goldsteinii
CL02T12C30]
gi|409225461|gb|EKN18380.1| DNA mismatch repair protein mutS [Parabacteroides goldsteinii
CL02T12C30]
Length = 880
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 15/299 (5%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN-----ILVFASMLLVIGKAL-FAHV 619
+ E L+ Y E A+ K+L L L +EL T + I V A+ + + L FA V
Sbjct: 501 ITEELKEYEEKILGAEEKILALENRLFTELVTCLAEFIPPIQVNANQIGRLDCLLSFAKV 560
Query: 620 SEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGP 676
+E R ++ P + D I++ + P +A + V+ + Q + ++TGP
Sbjct: 561 AESNR--YIRPNVDDSDVIDIKSGRHPVIEKQLPLG-EAYIANDVYLDSEKQQIIIITGP 617
Query: 677 NGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 736
N GKS+LLR +L+ G VPAESA I D I + + D+ + G+S+F VEM+
Sbjct: 618 NMAGKSALLRQTALITLMAQIGCFVPAESARIGMVDKIFTRVGASDNISVGESTFMVEMN 677
Query: 737 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTHLHGIF 793
E +I+ +SRSLVL DE+ RGT T G IA +I+E + N + +TH H +
Sbjct: 678 EASNILNNMSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPNARAKTLFATHYHELN 737
Query: 794 SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ K + + + + + KLV G S AK G+P++I++R+ ++
Sbjct: 738 EMERSFKRIKNYNVSVKEVSNKVIFLRKLVPGGSEHSFGIHVAKMAGMPKSIVKRSNEI 796
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL--NPFGGLRPESIPKA 98
E L + K+K P VLL RVGDFYE G DA I E G+ + I A
Sbjct: 6 ETPLMKQYFDIKAKHPDAVLLFRVGDFYEMYGEDAVIGAEILGIVQTKKANGPGQFIEMA 65
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDH 158
G P L L L R G V I ++++ P + R ++ PG V I+
Sbjct: 66 GFPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGVTELVTPG-------VSIND 118
Query: 159 DLDFPEPMPVIGVSRSAKGYCIISILE 185
++ + + K C IS+L+
Sbjct: 119 NILNHKENNFLAAIHFGKDLCGISLLD 145
>gi|395789133|ref|ZP_10468663.1| DNA mismatch repair protein mutS [Bartonella taylorii 8TBB]
gi|395431267|gb|EJF97294.1| DNA mismatch repair protein mutS [Bartonella taylorii 8TBB]
Length = 914
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 144/302 (47%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI--GKALFAH 618
F+T ++ + R A A LE+ L +E+ +++ + A+ L I AH
Sbjct: 540 FTTTELADLESRIAHAANHALTLELEIFDTLVNEIIEQVDFIRKAAEALAILDVSVALAH 599
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R + +L G + L+ P+ + + SA N +++
Sbjct: 600 LAEEQGYCRPIIDHSLTFRITAGRHPVVEQALRKQAAEPFVANNCDLSAQENH-QYAAIW 658
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 659 LLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGVVDRLFSRVGASDDLARGRSTF 718
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ + SLV++DEI RGT T G IA + +E L + C I++TH H
Sbjct: 719 MMEMVETATILNHASHHSLVILDEIGRGTSTFDGLSIAWATVEYLHEVNHCRAILATHFH 778
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L K+ M + DG V ++ G S + AK G+P T+I RA
Sbjct: 779 EMTALTQKLNRLHNVTMKVKNWDGDVVFLHEVAPGAADRSYGVQVAKLAGLPATVITRAT 838
Query: 851 DL 852
D+
Sbjct: 839 DV 840
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFNDAVEAAQALGITLTTRGKHLGEDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+ + P +A+ R S+ +
Sbjct: 92 ADDYLQKLIACGYRVAVCEQTEDPAEAKKRGSKSV 126
>gi|375008283|ref|YP_004981916.1| DNA mismatch repair protein mutS [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287132|gb|AEV18816.1| DNA mismatch repair protein mutS [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 902
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R + +++ G VPAE A +P FD + + + D + G
Sbjct: 598 REMLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAG 657
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 658 QSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFS 717
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + SLP ++ N +A+ +G+ V ++ DG +S A+ G+P
Sbjct: 718 THYHELTALERSLP-RLSNVHARAIEE---NGKVVFLHQIADGPADKSYGIHVAELAGLP 773
Query: 843 ETIIQRA 849
++I+RA
Sbjct: 774 ASLIERA 780
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P L R+GDFYE I A +E + GG E +P G P
Sbjct: 10 QYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGG--DERVPMCGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 68 SAQGYIEQLIEKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 111
>gi|387783192|ref|YP_006069275.1| DNA mismatch repair protein mutS [Streptococcus salivarius JIM8777]
gi|338744074|emb|CCB94440.1| DNA mismatch repair protein mutS [Streptococcus salivarius JIM8777]
Length = 852
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 2/220 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNVQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATLNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYV 881
P +++RA+ + V I +E+ P A+ +V
Sbjct: 770 PADLLERADTILTQLEGETVTIRPQEKVSPQEKPATETHV 809
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQSYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|119357692|ref|YP_912336.1| DNA mismatch repair protein MutS [Chlorobium phaeobacteroides DSM
266]
gi|189030709|sp|A1BHN5.1|MUTS_CHLPD RecName: Full=DNA mismatch repair protein MutS
gi|119355041|gb|ABL65912.1| DNA mismatch repair protein MutS [Chlorobium phaeobacteroides DSM
266]
Length = 872
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 111/204 (54%), Gaps = 3/204 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q L ++TGPN GKSS LR LL G VPA+ A I D I + + D+ A G
Sbjct: 619 QRLLIITGPNMAGKSSYLRQAGLIVLLAQAGSFVPAQKAEIGLVDRIFTRVGASDNLASG 678
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM+E SI+ TS+SL+L+DEI RGT T+ G IA S+ E + D+IG + +
Sbjct: 679 ESTFLVEMNEAASILNNATSKSLLLLDEIGRGTSTSDGMSIAWSMSEFIHDSIGARTLFA 738
Query: 787 THLHGIFSLPLKIKNAA-YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
TH H + L +++ Y A E + + + K+V G S E A+ G+P+ +
Sbjct: 739 THYHELAELETRLQGVVNYNATVIETAE-KVIFLRKIVRGASDNSYGIEVARMAGMPQEV 797
Query: 846 IQRAEDLYIACGVNCVMIAAREQP 869
I RA+++ + ++ +QP
Sbjct: 798 IVRAKEILAGMEKREIDVSGIKQP 821
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE----SIPKAGCPV 102
+ L K ++P +LL RVGDFYE DA + + LN R +P AG P
Sbjct: 14 QYLDVKERYPDYLLLFRVGDFYETFFDDAKEV--SSALNIVLTRRSNGSSSEVPMAGFPH 71
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHD 159
+ L + GY V + ++V+ P++A+ R I+ PG Y ++ H+
Sbjct: 72 HASEGYIARLVKKGYKVAVCDQVEDPSEAKGIVRREITDIVTPGITYSDKILDDRHN 128
>gi|403365718|gb|EJY82649.1| DNA repair protein, putative [Oxytricha trifallax]
Length = 1348
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 118/244 (48%), Gaps = 23/244 (9%)
Query: 621 EGRRRKWVFPALKDIE---LDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPN 677
EGR RK + L+ + +D K + + ++N+ + L+TGPN
Sbjct: 975 EGRYRKKAYLELRQMRHPCIDLKQAQKSEKQQKKF--VPNDTLINNSKSNTRILLVTGPN 1032
Query: 678 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 737
GGKS+LLR C A +L G VPAES + D I + + D +GKS+F VEM E
Sbjct: 1033 MGGKSTLLRQTCLAVILAQIGCFVPAESCILTPVDRIFTRIGASDRILEGKSTFFVEMEE 1092
Query: 738 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH------ 790
+I+ T +SL ++DE+ RGT T G IA +++ L N I C + STH H
Sbjct: 1093 TNTILKNATFKSLAILDELGRGTSTFDGYSIAHAVLNYLTNYIKCRSLFSTHYHLLLDKF 1152
Query: 791 ----GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
GI S + K + + E+L +K ++G C +S AK G+P +I
Sbjct: 1153 RDVEGIKSYHMACKQSETEQDRIEFL-------YKFIEGDCPQSFGMNVAKMAGLPINVI 1205
Query: 847 QRAE 850
+ A+
Sbjct: 1206 RHAK 1209
>gi|403351679|gb|EJY75335.1| DNA repair protein, putative [Oxytricha trifallax]
Length = 1227
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 118/244 (48%), Gaps = 23/244 (9%)
Query: 621 EGRRRKWVFPALKDIE---LDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPN 677
EGR RK + L+ + +D K + + ++N+ + L+TGPN
Sbjct: 854 EGRYRKKAYLELRQMRHPCIDLKQAQKSEKQQKKF--VPNDTLINNSKSNTRILLVTGPN 911
Query: 678 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 737
GGKS+LLR C A +L G VPAES + D I + + D +GKS+F VEM E
Sbjct: 912 MGGKSTLLRQTCLAVILAQIGCFVPAESCILTPVDRIFTRIGASDRILEGKSTFFVEMEE 971
Query: 738 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH------ 790
+I+ T +SL ++DE+ RGT T G IA +++ L N I C + STH H
Sbjct: 972 TNTILKNATFKSLAILDELGRGTSTFDGYSIAHAVLNYLTNYIKCRSLFSTHYHLLLDKF 1031
Query: 791 ----GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
GI S + K + + E+L +K ++G C +S AK G+P +I
Sbjct: 1032 RDVEGIKSYHMACKQSETEQDRIEFL-------YKFIEGDCPQSFGMNVAKMAGLPINVI 1084
Query: 847 QRAE 850
+ A+
Sbjct: 1085 RHAK 1088
>gi|449883047|ref|ZP_21784906.1| DNA mismatch repair protein MutS [Streptococcus mutans SA38]
gi|449250298|gb|EMC48364.1| DNA mismatch repair protein MutS [Streptococcus mutans SA38]
Length = 849
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 4/196 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI 854
G+P+ ++ RA+ + +
Sbjct: 767 AGLPKDLLNRADHILV 782
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + + L IP AG P +
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKVAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P +A R + PG+
Sbjct: 72 AQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|449924910|ref|ZP_21799951.1| DNA mismatch repair protein MutS [Streptococcus mutans 4SM1]
gi|449162202|gb|EMB65354.1| DNA mismatch repair protein MutS [Streptococcus mutans 4SM1]
Length = 849
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 4/196 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI 854
G+P+ ++ RA+ + +
Sbjct: 767 AGLPKDLLNRADHILV 782
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|448746503|ref|ZP_21728170.1| DNA mismatch repair protein MutS, type 1 [Halomonas titanicae BH1]
gi|445565841|gb|ELY21949.1| DNA mismatch repair protein MutS, type 1 [Halomonas titanicae BH1]
Length = 853
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 150/325 (46%), Gaps = 22/325 (6%)
Query: 570 LERYHEAGAKAKAKVLE----LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRR 625
L+ + + AK++ L L L +L ++ L S L L A
Sbjct: 507 LKEFEDKALSAKSRALTREKWLYDRLLGDLNASLHALQSTSQALAELDVLCAFAERAEAL 566
Query: 626 KWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGG 679
WV P L + I++D G P +E V N V + Q + ++TGPN G
Sbjct: 567 NWVRPTLSETTGIQIDA-------GRHPVVEQVSETPFVPNDVTLNPDQHMLIITGPNMG 619
Query: 680 GKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739
GKS+ +R +LL CG VPA++A I D I + S D A G+S+F VEM+E
Sbjct: 620 GKSTYMRQTALIALLAHCGSFVPADAAEIGPLDRIFTRIGSSDDLAGGRSTFMVEMTETA 679
Query: 740 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799
+I+ T +SL+L+DEI RGT T G +A + E L L + +TH + +LP +
Sbjct: 680 NILHNATQQSLILMDEIGRGTSTFDGLSLAWASAEHLAKGRALTLFATHYFEMTALPEHM 739
Query: 800 KNAAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC-- 856
+ A + TE+ D V ++ G +S + A+ GVP +I+RA + I+
Sbjct: 740 EGVANIHLTATEHGDS-IVFMHRIEAGPASQSYGLQVAQLAGVPNHVIKRAREKLISLEQ 798
Query: 857 -GVNCVMIAAREQPPPSIIGASCVY 880
V+ A R P + + A+ +
Sbjct: 799 RDVDNTAQAPRTAPQQNDLFAAAPH 823
Score = 40.0 bits (92), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGID---ACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K + P +L R+GDFYE D A L++ L G + IP AG P
Sbjct: 14 QYLKIKREHPEVLLFYRMGDFYELFFDDAKRAAALLDIT-LTQRGQSGGKPIPMAGVPYH 72
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHD 159
+ L L G SV I E++ P ++ R + PG+ + L+ D
Sbjct: 73 SAEGYLARLVAGGESVAICEQIGDPATSKGPVDRQVVRIVTPGTLHDEALLDARRD 128
>gi|261419511|ref|YP_003253193.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC61]
gi|319766326|ref|YP_004131827.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC52]
gi|448237462|ref|YP_007401520.1| DNA mismatch repair protein [Geobacillus sp. GHH01]
gi|261375968|gb|ACX78711.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC61]
gi|317111192|gb|ADU93684.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC52]
gi|445206304|gb|AGE21769.1| DNA mismatch repair protein [Geobacillus sp. GHH01]
Length = 903
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R + +++ G VPAE A +P FD + + + D + G
Sbjct: 599 REMLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAG 658
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 659 QSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFS 718
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + SLP ++ N +A+ +G+ V ++ DG +S A+ G+P
Sbjct: 719 THYHELTALERSLP-RLSNVHARAIEE---NGKVVFLHQIADGPADKSYGIHVAELAGLP 774
Query: 843 ETIIQRA 849
++I+RA
Sbjct: 775 ASLIERA 781
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+++P L R+GDFYE DA + L G E +P G P +
Sbjct: 10 QYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AQGYIEQLIEKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|417850302|ref|ZP_12496212.1| DNA mismatch repair protein MutS [Streptococcus mitis SK1080]
gi|339452886|gb|EGP65506.1| DNA mismatch repair protein MutS [Streptococcus mitis SK1080]
Length = 844
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P F AI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAIMAQMGSYVPAESARLPIFYAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPADLLARADKI 780
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|448352673|ref|ZP_21541454.1| DNA mismatch repair protein MutS [Natrialba hulunbeirensis JCM
10989]
gi|445641952|gb|ELY95023.1| DNA mismatch repair protein MutS [Natrialba hulunbeirensis JCM
10989]
Length = 917
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 141/301 (46%), Gaps = 7/301 (2%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T +++E + A +A + EL + S + ++ + + L AL +
Sbjct: 549 ERFVTPELKEREDEIVGAEERADEREYELFCDVRSGIGDEVERVQELADALATLDALVSL 608
Query: 619 VSEGRRRKWVFPALKDIELDGANC---LKMNGLSPYWFDAAEGSAVHNTVDM---QSLFL 672
+ + + P + D+E + N + + G + + S V N Q L +
Sbjct: 609 ATVAAQYDYCRPEILDLESERTNSGVEIDITGGRHPVVERTQESFVPNGAQFGSEQRLAV 668
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + LL G VPAESA + + I + + D A G+S+F
Sbjct: 669 ITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAESARLTPVERIFTRVGASDDIAGGRSTFM 728
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +TH H
Sbjct: 729 VEMDELATILRDADERSLVLLDEVGRGTSTADGLAIAQAITEHLHDAVGATTLFATHHHP 788
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L + A E DG+ V ++ G S E A GVPE ++ R+ +
Sbjct: 789 LTELADDLPEAFTLHFEVEQTDGEVVFHHEIEPGAATGSYGVEVATAAGVPEDVVDRSRE 848
Query: 852 L 852
L
Sbjct: 849 L 849
>gi|170054869|ref|XP_001863325.1| DNA mismatch repair protein MSH6 [Culex quinquefasciatus]
gi|167875012|gb|EDS38395.1| DNA mismatch repair protein MSH6 [Culex quinquefasciatus]
Length = 1130
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 16/316 (5%)
Query: 551 SKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLV 610
K K G + + T + E L+R + + K + +L R + + + ++ L+
Sbjct: 779 QKKGKNGVKRYHTDETREFLKRMMQTEDQRKVVLKDLARRIFEKFSSAYDMWKTCVDLVG 838
Query: 611 IGKALFAHVSEGRRR-KWVFPALKDIELDGANCLKMN-GLSPYWFDAAE--GSAVHNTVD 666
L A GR FP + D + + +++ G+ P D + V D
Sbjct: 839 TLDVLTALAEFGRSSGSTCFPEILDTDEEKGQIFELSEGIHPCVSDPENYIPNGVSLGQD 898
Query: 667 MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPAD 726
L LLTGPN GGKS+L+R + +++ G +PAES + D I + + D
Sbjct: 899 GTRLILLTGPNMGGKSTLMRQVGVLAIMAQIGAPIPAESCRLTLIDRIFTRLGANDDIMA 958
Query: 727 GKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVS 786
G S+F VE++E +I+ T +SLVL+DE+ RGT T GT IAG++++ L + C + S
Sbjct: 959 GHSTFLVELNETSTILKHATEKSLVLLDELGRGTATYDGTSIAGAVVQFLAELKCRSMFS 1018
Query: 787 THLHGI---FSLPLKIKNAAYKAMGTEYLDGQTVPT-------WKLVDGICRESLAFETA 836
TH H + F +I + A E D + PT +K G C +S F A
Sbjct: 1019 THYHNLVDNFERDERIL-LGHMACMVEKEDDED-PTQETVTFLYKYAPGSCPKSYGFNAA 1076
Query: 837 KREGVPETIIQRAEDL 852
K G+P II+RA +L
Sbjct: 1077 KLAGMPPQIIKRAYEL 1092
>gi|289450250|ref|YP_003475196.1| DNA mismatch repair protein MutS [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184797|gb|ADC91222.1| DNA mismatch repair protein MutS [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 876
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D +SL LLTGPN GKS+ +R ++ G VPA A I DAI + + D
Sbjct: 612 DDKSLLLLTGPNMAGKSTFMRQTALIVIMAQMGSFVPAAKAEIGIVDAIYTRIGASDDLT 671
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCL 782
G+S+F VEM E+ +I+ T RSL+++DEI RGT T G IA ++IETL D I
Sbjct: 672 AGQSTFMVEMHEVATILAKATKRSLLIMDEIGRGTSTYDGLAIASAVIETLTGKDGIQAR 731
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ STH H + + + N + E + + ++ G +S E A+ GVP
Sbjct: 732 TLFSTHYHELVEMEDILPNVINYHVAVERRGEEIIFLHQIERGGSDDSFGIEVARLAGVP 791
Query: 843 ETIIQRAEDL 852
+ +++RA +L
Sbjct: 792 KNVVERANEL 801
>gi|319407965|emb|CBI81619.1| DNA mismatch repair protein MutS [Bartonella schoenbuchensis R1]
Length = 908
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 15/304 (4%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI--GKALFAH 618
F+T ++ E R A A LE+ L +E+ ++ + AS L + AH
Sbjct: 537 FTTTELVELESRIAHAANHAITLELEIFDTLVNEITAHVDFIRKASEALAVLDVSVALAH 596
Query: 619 VSEGRRRKWVFPALKD---IELDGA------NCLKMNGLSPYWFDAAEGSAVHNTVDMQS 669
++E + + P + D ++ G L+ + + + SA + +
Sbjct: 597 LAE--EQGYCRPKIDDSLTFQITGGRHPVVEQALRKQATESFVANDCDLSAQQDH-QYAA 653
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S
Sbjct: 654 IWLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPAASAHIGVVDRLFSRVGASDDLARGRS 713
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F +EM E +I+ ++RSLV++DEI RGT T G IA + +E L + C I++TH
Sbjct: 714 TFMMEMVETATILNHASNRSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNHCRAILATH 773
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L K+ M + +G V ++ G S + AK G+P +I R
Sbjct: 774 FHEMTALTKKLNRLHNVTMKVKNWNGDVVFLHEVTKGAADRSYGVQVAKLAGLPTAVIAR 833
Query: 849 AEDL 852
A D+
Sbjct: 834 ATDV 837
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV +
Sbjct: 29 QYIEIKAVNSDSLLFYRMGDFYELFFNDAIEASQALGITLTTRGKHLGEDIPMCGVPVHS 88
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+ + P +A+ R S+ +
Sbjct: 89 ADDYLQKLIARGYRVAVCEQTEDPAEAKKRGSKSV 123
>gi|313672389|ref|YP_004050500.1| DNA mismatch repair protein muts [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939145|gb|ADR18337.1| DNA mismatch repair protein MutS [Calditerrivibrio nitroreducens
DSM 19672]
Length = 850
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 107/187 (57%), Gaps = 7/187 (3%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ LR++ +L+ CGL VPA A I + D I + + D+ A G+S
Sbjct: 597 LMIITGPNMSGKSTYLRTVAVITLMAHCGLFVPAREAKIGFVDRIFTRVGASDNLARGES 656
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E +I+ T +SL+++DEI RGT T G IA S+ E + + + + +TH
Sbjct: 657 TFMVEMLETANIIKNATQKSLIILDEIGRGTSTFDGLSIAWSVAEYIAERVKAKTLFATH 716
Query: 789 LHGIF---SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
H + S+ +KN Y A+ E+ + + K+ +G+ +S AK G+PE I
Sbjct: 717 YHELTELESMVAGVKN--YTALVKEW-KNEIIFMRKITEGVADKSYGIYVAKLAGLPEAI 773
Query: 846 IQRAEDL 852
+ RAE++
Sbjct: 774 VSRAEEV 780
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES--IPKAGCPVVN 104
+ LQ K +P +L R+GDFYE G DA I + + + E IP G P +
Sbjct: 13 QFLQEKKNYPDAILFFRMGDFYEMFGEDAKIASKILNIALTARNKNEENPIPMCGIPYHS 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L GY V I E+++ P A+ R + PG+
Sbjct: 73 YIPYLKKLVDAGYKVAICEQLEDPKNAKGIVKRGVVRVVTPGT 115
>gi|304320148|ref|YP_003853791.1| DNA mismatch repair protein [Parvularcula bermudensis HTCC2503]
gi|303299051|gb|ADM08650.1| DNA mismatch repair protein [Parvularcula bermudensis HTCC2503]
Length = 873
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
SL ++TGPN GKS+ LR ++L CG VPA I D + + + D+ A G+
Sbjct: 624 SLAVVTGPNMAGKSTFLRQNALIAILAQCGSFVPAARVKIGIVDRLFSRVGASDNLAQGR 683
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E +I+ T RSLV++DE+ RGT T G IA + +E L D IGC + +T
Sbjct: 684 STFMVEMLETAAILNQATVRSLVILDEVGRGTATYDGMAIAWATLEELHDGIGCRALFAT 743
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L K+ +M + G+ V ++ +G S AK G+P +++
Sbjct: 744 HYHELTALSDKLGRMRNLSMAVKEWKGEVVFLHEVREGAADRSYGLAVAKLAGLPRRVVR 803
Query: 848 RAEDL 852
RAE L
Sbjct: 804 RAESL 808
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYA---GLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRN 115
+L R+GDFYE + D I A L G E+IP G PV L L R
Sbjct: 19 LLFYRMGDFYE-LFFDDAIKASAALDITLTHRGKQEGEAIPMCGVPVHAAETYLARLIRK 77
Query: 116 GYSVCIVEEVQGPTQARSRKSRFI 139
G+ V I E+ + P +A+ R S+ +
Sbjct: 78 GFRVAICEQTEDPKEAKKRGSKAV 101
>gi|449919045|ref|ZP_21797681.1| DNA mismatch repair protein MutS [Streptococcus mutans 1SM1]
gi|449159742|gb|EMB63054.1| DNA mismatch repair protein MutS [Streptococcus mutans 1SM1]
Length = 849
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 4/196 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L ++ + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI 854
G+P+ ++ RA+ + +
Sbjct: 767 AGLPKDLLNRADHILV 782
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|56419841|ref|YP_147159.1| DNA mismatch repair protein MutS [Geobacillus kaustophilus HTA426]
gi|81675852|sp|Q5L0E5.1|MUTS_GEOKA RecName: Full=DNA mismatch repair protein MutS
gi|56379683|dbj|BAD75591.1| DNA mismatch repair protein [Geobacillus kaustophilus HTA426]
Length = 896
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R + +++ G VPAE A +P FD + + + D + G
Sbjct: 592 REMLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAG 651
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 652 QSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFS 711
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + SLP ++ N +A+ +G+ V ++ DG +S A+ G+P
Sbjct: 712 THYHELTALERSLP-RLSNVHARAIEE---NGKVVFLHQIADGPADKSYGIHVAELAGLP 767
Query: 843 ETIIQRA 849
++I+RA
Sbjct: 768 ASLIERA 774
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P L R+GDFYE I A +E + GG E +P G P
Sbjct: 4 QYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGG--DERVPMCGVPYH 61
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 62 SAQGYIEQLIEKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 105
>gi|19704028|ref|NP_603590.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|44888229|sp|Q8RFK2.1|MUTS_FUSNN RecName: Full=DNA mismatch repair protein MutS
gi|19714218|gb|AAL94889.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 896
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 155/301 (51%), Gaps = 31/301 (10%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 529 LKEYEEKVITAKSKIEALEYELFKQLTSEIKGHIDSLYKLANRIANLDIV---SNFAHIA 585
Query: 621 EGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLT 674
+ +V P + D +E+ G + L P G+ V N + D +L +LT
Sbjct: 586 --TKNSYVKPEIGDGDILEIKGGRHPIVESLIP------SGTYVKNDIILDDKNNLIILT 637
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +E
Sbjct: 638 GPNMSGKSTYMKQVALNIIMAHIGSYVAADCAKIPIVDKIFTRVGASDDLLTGQSTFMLE 697
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF 793
M+E+ SI+ T++S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 698 MTEVASILNNATNKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELT 757
Query: 794 SLPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRAED 851
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 758 ELEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSNK 815
Query: 852 L 852
+
Sbjct: 816 I 816
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP--ESIPKAGCPVVNLRQ 107
+ K ++ E+L+ R+GDFYE DA I + GL R + +P AG P ++
Sbjct: 32 KIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNREKGQDVPLAGVPYHSVAS 91
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYSV I ++V+ P A R ++ PG+
Sbjct: 92 YIAKLVEKGYSVAICDQVEDPKSATGIVKREVTRVITPGT 131
>gi|222099881|ref|YP_002534449.1| DNA mismatch repair protein MutS [Thermotoga neapolitana DSM 4359]
gi|254766645|sp|B9K800.1|MUTS_THENN RecName: Full=DNA mismatch repair protein MutS
gi|221572271|gb|ACM23083.1| DNA mismatch repair protein mutS [Thermotoga neapolitana DSM 4359]
Length = 801
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 6/190 (3%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I M + D A
Sbjct: 581 DEKRFTVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAKKAVLPVFDRIFTRMGARDDLA 640
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 785
G+S+F VEM+E+ I+ T +SLVL+DE+ RGT T G IA +I E L + GC +
Sbjct: 641 GGRSTFLVEMNEMALILLKATKKSLVLLDEVGRGTGTQDGISIAWAISEELISRGCKVLF 700
Query: 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGI------CRESLAFETAKRE 839
+TH + +L K + + V T ++VDG+ S E A+
Sbjct: 701 ATHFIELTNLENSFPQVQNKTILVKEEGSNVVFTHRVVDGVADRSYGADRSYGIEVARIA 760
Query: 840 GVPETIIQRA 849
G+PE +I+RA
Sbjct: 761 GIPENVIRRA 770
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA + + LN R ++ P A
Sbjct: 1 MKMTPLMEQYLKIKEQYKDSILLFRLGDFYEAFFEDAKTVSKV--LNIVLTKRQDA-PMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P L L L GY V I ++++ P++++ R ++ PG+
Sbjct: 58 GIPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGA 106
>gi|297530518|ref|YP_003671793.1| DNA mismatch repair protein MutS [Geobacillus sp. C56-T3]
gi|297253770|gb|ADI27216.1| DNA mismatch repair protein MutS [Geobacillus sp. C56-T3]
Length = 903
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R + +++ G VPAE A +P FD + + + D + G
Sbjct: 599 REMLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAG 658
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 659 QSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFS 718
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + SLP ++ N +A+ +G+ V ++ DG +S A+ G+P
Sbjct: 719 THYHELTALERSLP-RLSNVHARAIEE---NGKVVFLHQIADGPADKSYGIHVAELAGLP 774
Query: 843 ETIIQRA 849
++I+RA
Sbjct: 775 ASLIERA 781
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+++P L R+GDFYE DA + L G E +P G P +
Sbjct: 10 QYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AQGYIEQLIEKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|448317602|ref|ZP_21507152.1| DNA mismatch repair protein MutS [Natronococcus jeotgali DSM 18795]
gi|445602993|gb|ELY56963.1| DNA mismatch repair protein MutS [Natronococcus jeotgali DSM 18795]
Length = 884
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L ++TGPN GKS+ +R + LL G VPAESA I D I + + D A G
Sbjct: 629 RRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAESARISPVDRIFTRVGASDDIAGG 688
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +
Sbjct: 689 RSTFMVEMDELATILREADERSLVLLDEVGRGTSTADGLAIARAITEHLHDEVGAPTLFA 748
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L + A E +G+ V ++ G S E A GVPE ++
Sbjct: 749 THHHPLTELAEALPAAFTLHFQVEQREGEVVFHHEIAPGAATGSYGVEVATAAGVPEDVV 808
Query: 847 QRAEDL 852
+R+ +L
Sbjct: 809 ERSREL 814
>gi|42523431|ref|NP_968811.1| DNA mismatch repair protein MutS [Bdellovibrio bacteriovorus HD100]
gi|39575637|emb|CAE79804.1| DNA mismatch repair protein [Bdellovibrio bacteriovorus HD100]
Length = 840
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 9/231 (3%)
Query: 626 KWVFPALKDIELDGANCLKMNG-LSPYWFDAAEGSAVHNTVDMQ--SLFLLTGPNGGGKS 682
K+V P DG+ LKM P + + V N ++++ S LLTGPN GKS
Sbjct: 536 KYVRPKFS---ADGS--LKMKASRHPVVEQTVKKNFVANDLELRQHSCLLLTGPNMAGKS 590
Query: 683 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 742
+ +R + ++L G VP + A +P FDAI + + D ++G S+F VEM+E +++
Sbjct: 591 TFMRQVALNAILAQMGSFVPCDEAEMPIFDAIFTRIGASDQLSEGLSTFMVEMTETSAML 650
Query: 743 TATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCLGIVSTHLHGIFSLPLKIKN 801
T SLV++DE+ RGT T G C+A SI+E L ++ L +TH H + SL
Sbjct: 651 KNATKDSLVILDEVGRGTSTFDGMCLAQSILEHLLSDVKALTFFATHYHELTSLDQSFGQ 710
Query: 802 AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
M +G+ LV G +S + A+ G+P T+ +RA+ L
Sbjct: 711 ITNAHMTVAERNGEIRFLHTLVKGPALKSYGVQVAELAGLPATVTKRAKSL 761
>gi|407476888|ref|YP_006790765.1| DNA mismatch repair protein MutS [Exiguobacterium antarcticum B7]
gi|407060967|gb|AFS70157.1| DNA mismatch repair protein MutS [Exiguobacterium antarcticum B7]
Length = 838
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 17/276 (6%)
Query: 586 ELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKM 645
EL + +++T+I L S + L A R +V P + L G +
Sbjct: 504 ELFCQVRDQVKTQIESLQRVSRRIAELDVLVALAEIAERYDYVRP----VTLTGRDVTIE 559
Query: 646 NGLSPYWFDA-AEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV 701
NG P G V N + + + + L+TGPN GKS+ +R +LL G V
Sbjct: 560 NGRHPVIETVLPRGEYVANGITLNEDREMLLITGPNMSGKSTYMRQFALIALLHQIGSFV 619
Query: 702 PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTE 761
PA A +P FD I + + D G+S+F VEM E + +T T +SL+L+DEI RGT
Sbjct: 620 PASRAELPVFDQIFTRIGAADDLVSGQSTFMVEMVETQEALTRATDQSLILLDEIGRGTS 679
Query: 762 TAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF----SLPLKIKNAAYKAMGTEYLDGQT 816
T G +A +I+E + +++G + STH H + S+P ++ N +A+ DG+
Sbjct: 680 TYDGMALAQAIVEHIAEHVGAKTLFSTHYHELTVLEDSMP-RLANVHVRAVEQ---DGRV 735
Query: 817 VPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
V ++ DG +S A+ +P+ +I RAE L
Sbjct: 736 VFLHEVRDGKADQSYGIHVARLADLPDALIARAEVL 771
>gi|422940102|ref|ZP_16967459.1| DNA mismatch repair protein MutS, partial [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339890256|gb|EGQ79411.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 528
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 154/297 (51%), Gaps = 29/297 (9%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 162 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 218
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTV---DMQSLFLLTG 675
+ +V P E+ N L++ G + A G+ V N + D +L +LTG
Sbjct: 219 --TKNSYVKP-----EISEENILEIKGGRHPIVETLIASGTYVKNDIVLDDKNNLIILTG 271
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +EM
Sbjct: 272 PNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEM 331
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
+E+ SI+ T++S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 332 TEVASILNNATNKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTE 391
Query: 795 LPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 392 LEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 446
>gi|385831796|ref|YP_005869609.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
CV56]
gi|418038832|ref|ZP_12677148.1| hypothetical protein LLCRE1631_01955 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|326407804|gb|ADZ64875.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
CV56]
gi|354692839|gb|EHE92644.1| hypothetical protein LLCRE1631_01955 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 840
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 10/235 (4%)
Query: 622 GRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLLTGP 676
++ ++ P L D G+ +++ G +A G+ V N +++ + L+TGP
Sbjct: 547 AEKQGYIRPTLTD----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLITGP 602
Query: 677 NGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 736
N GKS+ +R ++ G VPAE+A++P FDAI + + D+ G+S+F VEMS
Sbjct: 603 NMSGKSTYMRQFALTVIMAQIGSFVPAETANLPIFDAIFTRIGASDNLISGESTFMVEMS 662
Query: 737 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSL 795
E + +SRSL++ DE+ RGT T G +A +IIE + D+IG + +TH H + L
Sbjct: 663 EANHAIQKASSRSLIIFDELGRGTATYDGMALAQAIIEYVHDHIGAKTLFATHYHELTDL 722
Query: 796 PLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ + + T +G K+ +G +S AK G+P+ +++RA+
Sbjct: 723 DEALVHLDNVHVATLEQNGNVTFLHKITEGPADKSYGIHVAKIAGLPQPLLERAD 777
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AAAEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>gi|357386405|ref|YP_004901129.1| DNA mismatch repair protein MutS [Pelagibacterium halotolerans B2]
gi|351595042|gb|AEQ53379.1| DNA mismatch repair protein MutS [Pelagibacterium halotolerans B2]
Length = 901
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 656 AEGSA-VHNTVDMQS--------LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA 706
AEG V N D+ + L+L+TGPN GGKS+ LR ++L G VPA SA
Sbjct: 620 AEGQTFVANDADLSAPEPDEGGQLWLVTGPNMGGKSTFLRQNALIAILAQMGSYVPATSA 679
Query: 707 SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGT 766
I D + + + D A G+S+F VEM E +I+ T RSLV++DEI RGT T G
Sbjct: 680 HIGVVDRVFSRVGASDDIAQGRSTFMVEMVETAAILNRATRRSLVILDEIGRGTATFDGL 739
Query: 767 CIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDG 825
IA + +ETL + GC I +TH H + +L + + M + G V ++ G
Sbjct: 740 SIAWACVETLHETTGCRAIFATHYHELTALSATLSRVSNHTMSVKEYKGDVVFLHEVTQG 799
Query: 826 ICRESLAFETAKREGVPETIIQRA 849
S + AK G+P +I RA
Sbjct: 800 AADRSYGIQVAKLAGLPAPVITRA 823
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ + K P +L R+GDFYE DA I G L G E IP G P+
Sbjct: 24 QFFEIKGVNPGYLLFYRMGDFYELFFDDAEIASAALGITLTKRGKHLGEDIPMCGVPIHA 83
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
+ L L G+ V + E+V+ P +A+ R S+ +
Sbjct: 84 AQDYLKKLISLGHKVAVCEQVEDPAEAKKRGSKSV 118
>gi|338997258|ref|ZP_08635959.1| DNA mismatch repair protein MutS [Halomonas sp. TD01]
gi|338765855|gb|EGP20786.1| DNA mismatch repair protein MutS [Halomonas sp. TD01]
Length = 855
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 139/295 (47%), Gaps = 15/295 (5%)
Query: 570 LERYHEAGAKAKAKVLE----LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRR 625
L+ + + AK++ L L L EL ++ L S L L A
Sbjct: 507 LKEFEDKALSAKSRALTREKWLYERLMGELNAALHALQNTSRALAELDVLCAFAERAEAL 566
Query: 626 KWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGK 681
WV P L D A L+++ G P ++ V N V + Q + ++TGPN GGK
Sbjct: 567 NWVRPQLSD-----ATGLRISAGRHPVVEHVSDTPFVPNDVTLTPDQHMLIITGPNMGGK 621
Query: 682 SSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI 741
S+ +R +LL G VPA+SA I D I + S D A G+S+F VEM+E +I
Sbjct: 622 STYMRQTALIALLAHSGSFVPADSAEIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETANI 681
Query: 742 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801
+ T SLVL+DEI RGT T G +A + E L L + +TH + +LP + +
Sbjct: 682 LHNATEHSLVLMDEIGRGTSTFDGLSLAWASAEYLAEAKALTLFATHYFEMTALPEQAEG 741
Query: 802 AAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA 855
A + TE+ D V ++ G +S + A+ GVP +I+RA + +A
Sbjct: 742 VANIHLTATEHGDS-IVFMHRIESGPASQSYGLQVAQLAGVPSHVIRRAREKLMA 795
>gi|386085761|ref|YP_006001635.1| Mismatch repair ATPase (MutS family) [Streptococcus thermophilus
ND03]
gi|387908858|ref|YP_006339164.1| Mismatch repair ATPase (MutS family) [Streptococcus thermophilus
MN-ZLW-002]
gi|312277474|gb|ADQ62131.1| Mismatch repair ATPase (MutS family) [Streptococcus thermophilus
ND03]
gi|387573793|gb|AFJ82499.1| Mismatch repair ATPase (MutS family) [Streptococcus thermophilus
MN-ZLW-002]
Length = 852
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGAYVPADSVDLPVFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNSLIHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAARE----QPPPSI 873
P ++ RA+ + V+I +E Q P+I
Sbjct: 770 PTDLLNRADTILTQLEGETVVIQPQEKVSSQEKPAI 805
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|319406497|emb|CBI80138.1| DNA mismatch repair protein MutS [Bartonella sp. 1-1C]
Length = 911
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI--GKALFAH 618
F+T ++ E R A LE+ L E+ +I+ + AS L I AH
Sbjct: 540 FTTTELAELESRIAHAANHVLTLELEIFDKLVDEITEQIDFIRQASEALAILDVSVALAH 599
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R V +L G + L+ P+ + + SA + +D ++
Sbjct: 600 LAEEQGYCRPKVDHSLAFHITAGRHPVVEQALRKQVAEPFVANNCDLSAQNKHLDA-DIW 658
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 659 LLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGVVDRLFSRVGASDDLARGRSTF 718
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ ++ SLV++DEI RGT T G IA + +E L I C I++TH H
Sbjct: 719 MMEMVETATILNHASNHSLVILDEIGRGTSTFDGLSIAWATVEHLHEINRCRAILATHFH 778
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L K+ M + + + ++ G S + AK G+P T+I RA
Sbjct: 779 EMTALTKKLNRLHNVTMKVKNWNSDVIFLHEITKGTADRSYGVQVAKLAGLPATVISRAT 838
Query: 851 DL 852
D+
Sbjct: 839 DV 840
Score = 46.2 bits (108), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G + IP G PV +
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFNDAIEAAQALGITLTTRGKHLGQDIPMCGVPVHS 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+++ P +A+ R S+ +
Sbjct: 92 ADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSV 126
>gi|341821182|emb|CCC57524.1| DNA mismatch repair protein mutS [Weissella thailandensis fsh4-2]
Length = 885
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N VDMQ ++ L+TGPN GKS+ +R + ++ G VPAE A++P FD I
Sbjct: 589 SYVANDVDMQPSDTILLITGPNMSGKSTYMRQLALIVIMAQIGSFVPAEEATLPVFDQIF 648
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G S+F VEM+E + + T SL+L DE+ RGT T G +A +IIE
Sbjct: 649 TRIGAADDLISGNSTFMVEMAEANTALQNATKHSLILFDELGRGTATYDGMALAQAIIEY 708
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ + + STH H + +L ++ +G +G+ + + K++ G +S
Sbjct: 709 VHQHTQAKTLFSTHYHELTALADELTALRNVHVGANEENGELIFSHKVLPGPADQSYGIN 768
Query: 835 TAKREGVPETIIQRA 849
AK G+PE++I RA
Sbjct: 769 VAKLAGLPESLIDRA 783
Score = 47.4 bits (111), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K+++ L R+GDFYE DA + ++E L + IP AG P +
Sbjct: 15 EIKAQYLDAFLFYRLGDFYELFNEDAVVGSQILELT-LTQRNKNSAKPIPMAGVPHHAAQ 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L GY V +VE+++ P A R + PG+
Sbjct: 74 NYIDILVDKGYKVAVVEQMENPADAEGMVKREVVQLVTPGT 114
>gi|448452617|ref|ZP_21593441.1| DNA mismatch repair protein MutS [Halorubrum litoreum JCM 13561]
gi|445808524|gb|EMA58588.1| DNA mismatch repair protein MutS [Halorubrum litoreum JCM 13561]
Length = 978
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 3/202 (1%)
Query: 657 EGSAVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
E S V N D+ S+ ++TGPN GKS+ +RS+ A +L G VPA++A++P FD +
Sbjct: 652 EESFVPNDADLPRGSVAVITGPNMSGKSTYMRSVALAVVLAQTGSFVPAQAATLPVFDRL 711
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D A G+S+F EMSE+ I+ + SLVL+DE+ RGT T G IA + E
Sbjct: 712 FTRVGASDDIAGGQSTFMREMSELTEILHDADADSLVLLDEVGRGTATTDGRAIARAAAE 771
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH HG+ L + + DG ++V G S
Sbjct: 772 FLHDELGATTLFATHYHGLTDLADERERVFNLHFTATREDGDVTFLHRVVPGASSSSYGV 831
Query: 834 ETAKREGVPETIIQRAEDLYIA 855
E A+ GVP ++ RA DL A
Sbjct: 832 EVAELAGVPGPVVDRARDLVAA 853
>gi|226951439|ref|ZP_03821903.1| methyl-directed mismatch repair protein, recognizes exocyclic
adducts of guanosine [Acinetobacter sp. ATCC 27244]
gi|226837806|gb|EEH70189.1| methyl-directed mismatch repair protein, recognizes exocyclic
adducts of guanosine [Acinetobacter sp. ATCC 27244]
Length = 879
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 13/281 (4%)
Query: 575 EAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD 634
E+ A A+ K+L L EL+ I L S + L + R W P
Sbjct: 530 ESRALAREKLL--FESLLDELRQNIAQLQMMSAAIAYIDVLANFAHQARLNNWARP---- 583
Query: 635 IELDGANCLKMN-GLSPY--WFDAAEGSAVHNTVDMQS-LFLLTGPNGGGKSSLLRSICA 690
E C+K++ G P + A + +D Q + ++TGPN GGKS+ +R
Sbjct: 584 -EFTPETCIKIHAGRHPVVEALNKAPFTPNDTFLDPQHRMAIITGPNMGGKSTFMRQTAL 642
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
SLL CG VPA+SA + D I + S D + GKS+F VEM+E I+ TS+SL
Sbjct: 643 ISLLAYCGSYVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSL 702
Query: 751 VLIDEICRGTETAKGTCIA-GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809
VL+DE+ RGT T G +A +++ + CL + +TH + L + Y
Sbjct: 703 VLMDEVGRGTSTYDGLSLAWACVLDLTKRVKCLCLFATHYFELTELSSETGIDNYHVTAQ 762
Query: 810 EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
E L+G + K+ G +S + AK G+P +I+ A+
Sbjct: 763 E-LNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQ 802
>gi|407979366|ref|ZP_11160182.1| DNA mismatch repair protein MutS [Bacillus sp. HYC-10]
gi|407413973|gb|EKF35644.1| DNA mismatch repair protein MutS [Bacillus sp. HYC-10]
Length = 858
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 123/261 (47%), Gaps = 12/261 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDM---QSLF 671
FA VSE RR +V P + E+D + G P + V N M +
Sbjct: 544 FATVSEKRR--YVRPEFSEDEVDV-----VGGRHPVVEKVMDHQEYVPNDCHMGKGRQTL 596
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + S+L G VPA A++P FD I + + D G+S+F
Sbjct: 597 LITGPNMSGKSTYMRQMALISILAQIGCFVPASKATLPIFDQIFTRIGAADDLISGQSTF 656
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG + STH H
Sbjct: 657 MVEMLEAKNAMVHATKNSLILFDEIGRGTSTYDGMALAQAIIEFVHDHIGAKTLFSTHYH 716
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ + E +G V ++ +G +S A+ +P+ II RA+
Sbjct: 717 ELTVLESQLSELKNVHVRAEEHEGTVVFLHQIKEGAADKSYGIHVAQLAELPDAIIDRAQ 776
Query: 851 DLYIACGVNCVMIAAREQPPP 871
+ + R P P
Sbjct: 777 TILTELESGSHEVIPRVSPAP 797
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K+ + L R+GDFYE DA +E + GG +IP G P
Sbjct: 10 QYLKIKADYQDAFLFFRLGDFYEMFFDDAKEAAQELEITLTSRDGG----TIPMCGVPYH 65
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 66 SASAYIEQLISKGYKVAICEQVEDPKTAKGVVKREVVQLITPGT 109
>gi|414155132|ref|ZP_11411447.1| DNA mismatch repair protein mutS [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411453182|emb|CCO09351.1| DNA mismatch repair protein mutS [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 870
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 107/216 (49%), Gaps = 13/216 (6%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L L+TGPN GGKS+ R + LL G VPA A I D I + + D + G
Sbjct: 613 RRLCLITGPNMGGKSTYQRQVALIVLLAQVGSFVPASMAKIGIVDRIFARVGASDDLSSG 672
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R I+ T+RSLV+IDE+ RGT +G IA ++IE L D +GC + S
Sbjct: 673 QSTFMVEMFETRQILDNATARSLVIIDELGRGTSNLEGMAIAQAVIEYLHDVVGCRTLFS 732
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L + A + Q V K+V +S A+ G+P +I
Sbjct: 733 THYHELAELEGLLPGLKNYATAVQEQGDQVVFLRKVVRDKASKSYGVHCARLAGLPGHVI 792
Query: 847 QRAEDLY------------IACGVNCVMIAAREQPP 870
+RA +L + G N V ++ +EQ P
Sbjct: 793 ERAAELVQQLEYRQRAAQEVVAGKNQVAVSGQEQAP 828
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLRPESIPKAGCPVVN 104
+ L+ K +FP +L R+GDFYE DA + + + G PE +P G P
Sbjct: 9 QYLEIKKQFPDAILFFRLGDFYEMFFEDAKLAAKELEITLTGRDAGEPERVPMCGVPFHA 68
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+V+ P AR R + PG+
Sbjct: 69 ADNYIGKLIDKGYKVAICEQVEDPRTARGIVKREVVRIITPGT 111
>gi|406586640|ref|ZP_11061567.1| DNA mismatch repair protein MutS [Streptococcus sp. GMD1S]
gi|419813732|ref|ZP_14338544.1| DNA mismatch repair protein MutS [Streptococcus sp. GMD2S]
gi|419817182|ref|ZP_14341350.1| DNA mismatch repair protein MutS [Streptococcus sp. GMD4S]
gi|404466312|gb|EKA11656.1| DNA mismatch repair protein MutS [Streptococcus sp. GMD4S]
gi|404472665|gb|EKA17082.1| DNA mismatch repair protein MutS [Streptococcus sp. GMD2S]
gi|404473892|gb|EKA18216.1| DNA mismatch repair protein MutS [Streptococcus sp. GMD1S]
Length = 844
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FD I +
Sbjct: 587 NSIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDTIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|337287987|ref|YP_004627459.1| DNA mismatch repair protein mutS [Thermodesulfobacterium sp. OPB45]
gi|334901725|gb|AEH22531.1| DNA mismatch repair protein mutS [Thermodesulfobacterium geofontis
OPF15]
Length = 865
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 113/199 (56%), Gaps = 10/199 (5%)
Query: 661 VHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML 716
V N+++M ++ ++TGPN GGKS+ LR +++ G VPA+SA + FD I
Sbjct: 600 VPNSLEMNKEDATVLIVTGPNMGGKSTFLRQNALIAIMAQMGSFVPAKSAKVGIFDKIFS 659
Query: 717 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776
+ + D G+S+F VEMSE I+ TS+SLV++DE+ RGT T G +A +I E L
Sbjct: 660 RIGAGDELIKGRSTFMVEMSECAYILKNATSKSLVILDEVGRGTSTFDGMSLAWAIAENL 719
Query: 777 DNIGCLGIVSTH---LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+++TH L + L IKN Y+ E+ +G+ + +K++ G+ +S
Sbjct: 720 YKKRVFTLLATHYIELTELAKLYSGIKN--YRVTVKEW-NGEVIFLYKVLPGVANQSYGI 776
Query: 834 ETAKREGVPETIIQRAEDL 852
E AK G+P+ ++ RA+++
Sbjct: 777 EVAKLAGIPQEVVDRAKEI 795
>gi|256847968|ref|ZP_05553412.1| DNA mismatch repair protein MutS [Lactobacillus coleohominis
101-4-CHN]
gi|256715028|gb|EEU30005.1| DNA mismatch repair protein MutS [Lactobacillus coleohominis
101-4-CHN]
Length = 877
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 145/302 (48%), Gaps = 21/302 (6%)
Query: 559 EWFST--LKVEEALERYHEAGAKAKAKVLE--LLRGLSSELQTKINILVFASMLLVIGKA 614
E FST LK +EAL GA+ K+ LE L + +++T I L + L
Sbjct: 492 ERFSTPELKEKEALI----LGAQEKSTALEYDLFVEVREQVKTAIERLQALAEALSELDV 547
Query: 615 L--FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD-AAEGSAVHNTVDM---Q 668
L FA VSE + +V P L + NG P V N V M
Sbjct: 548 LQSFAVVSE--KYHFVRPELNH----DHQLMIKNGRHPVVEKFMGHQEYVPNDVQMGQDT 601
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+ L+TGPN GKS+ +R + ++++ G +PAE A++P FD I + + D G+
Sbjct: 602 DILLITGPNMSGKSTYMRQLALSAVMAQMGCFIPAEKANMPIFDQIFTRIGAADDLVSGE 661
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + + T SL+L DEI RGT T G +A +IIE + +N+ + ST
Sbjct: 662 STFMVEMMEANNALLHATRNSLILFDEIGRGTATYDGMALAQAIIEYVHNNVHAKTLFST 721
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ +G +G+ + K+ DG +S AK G+P T+++
Sbjct: 722 HYHELTGLDQQLDKLQNVHVGATEENGELIFLHKVTDGPADKSYGIHVAKLAGMPATLLK 781
Query: 848 RA 849
RA
Sbjct: 782 RA 783
Score = 47.0 bits (110), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVE-------YAGLNPFGGLRPESIPKAG 99
+ K ++P L R+GDFYE DA L+E ++ NP IP G
Sbjct: 17 KVKDQYPDAFLFYRLGDFYELFNDDAIKGAQLLELTLTSRSHSAKNP--------IPMCG 68
Query: 100 CPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
P + +D L GY V I E+++ P +A+ R ++ PG+
Sbjct: 69 VPHRAVENYVDILIDKGYKVAICEQMEDPKKAKGMVKRAVTRLVTPGT 116
>gi|312872874|ref|ZP_07732936.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF
2062A-h1]
gi|311091608|gb|EFQ49990.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF
2062A-h1]
Length = 854
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|408789864|ref|ZP_11201505.1| DNA mismatch repair protein MutS [Lactobacillus florum 2F]
gi|408520886|gb|EKK20908.1| DNA mismatch repair protein MutS [Lactobacillus florum 2F]
Length = 856
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 150/327 (45%), Gaps = 25/327 (7%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQT---KINILVFASMLLVIGKAL 615
E F+T ++E EA K++ +L L +++ ++ L A L + ++
Sbjct: 486 ERFTTPALKEKESLILEAQEKSRTLEYDLFTKLRDQIKLEIPRVQKLAGAVSELDVLQS- 544
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE + ++ P D E N NG P + V N V M ++
Sbjct: 545 FATISE--QHQFARPQFNDQETLQIN----NGRHPVVEEVLGAQQYVPNDVVMGPETAIL 598
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +L G VPAE+A++P FD + + + D GKS+F
Sbjct: 599 LITGPNMSGKSTYMRQLALIVILAQVGCFVPAETATLPIFDQVFTRIGAADDLISGKSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + N + + STH H
Sbjct: 659 MVEMKEANQAIQLATRHSLILFDELGRGTSTYDGVALAQAIIEYIHNHVHAKTLFSTHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L + +G D Q V K++ G +S AK G+P ++QRA+
Sbjct: 719 ELTDLANHLPQLQNVHVGAVEKDDQLVFLHKILPGPADKSYGINVAKLAGLPSPLLQRAQ 778
Query: 851 DLYIACGVNCVMIAAREQPPPSIIGAS 877
V++ EQ P + A+
Sbjct: 779 ----------VILNQLEQEQPGVAQAA 795
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L R+GDFYE DA L+E L IP G P + +
Sbjct: 13 KIKDQYPDAFLFYRIGDFYELFNDDAVKGAQLLELT-LTARNHNAEHPIPMCGVPHQSAQ 71
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L GY V + E+++ P QA+ R + PG+
Sbjct: 72 TYIDVLVDKGYKVALCEQLEDPKQAQGMVKRAVVQVITPGT 112
>gi|313238586|emb|CBY13632.1| unnamed protein product [Oikopleura dioica]
Length = 890
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 102/196 (52%), Gaps = 4/196 (2%)
Query: 661 VHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N V M + L +LTGPN GGKS+ LRS+ SLL G VPA SA IP D I+
Sbjct: 622 VPNDVKMSEDRRLMILTGPNMGGKSTFLRSVGLCSLLAQIGSFVPAASAQIPIVDTIIAR 681
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TL 776
+ + D+ G S+FQ EM E +I T RSL+LIDE+ RGT T G +A +I E +
Sbjct: 682 IGAGDNLQRGISTFQHEMIETETIFRCATERSLLLIDELGRGTSTWDGFGLAYAISEHIV 741
Query: 777 DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
I L +TH H + SL + K D + +K+ DG C +S E A
Sbjct: 742 TKIKSLTFFATHYHEMASLASRCKGVFNMHTSVFVRDERITHLYKVSDGPCAQSYGIEIA 801
Query: 837 KREGVPETIIQRAEDL 852
K G +I+RA +L
Sbjct: 802 KLAGFEHGVIKRANEL 817
>gi|393235788|gb|EJD43340.1| DNA mismatch repair protein [Auricularia delicata TFB-10046 SS5]
Length = 967
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 147/307 (47%), Gaps = 23/307 (7%)
Query: 560 WFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINIL-----VFASMLLVIGKA 614
+F T + + + EA KAK +L++ + + +L V A+M +++
Sbjct: 578 FFRTQALADLATEFAEAAESYKAKQAQLVKEIVEVAASYTEVLLALDDVIATMDVILS-- 635
Query: 615 LFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSL 670
FAHV+ +V P + +E+ N P E S + N V+M
Sbjct: 636 -FAHVAMTAPTAYVKPTV--LEMGTGNVQLKEARHPCMEVQDEISFIPNDVEMIRGVSEF 692
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
++TGPN GGKS+ +R I +L+ G VP ESA++P FD+I+ + + DS G S+
Sbjct: 693 QIITGPNMGGKSTYIRQIGVIALMAQVGSFVPCESATVPIFDSILARVGAGDSQLKGVST 752
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHL 789
F EM E +I+ + T SLV+IDE+ RGT T G +A +I E + I + +TH
Sbjct: 753 FMAEMLETATILKSATQNSLVIIDELGRGTSTYDGFGLAWAISEHIASQIRAFCLFATHF 812
Query: 790 HGIFSLPLK---IKN----AAYKAMGTEYL-DGQTVPTWKLVDGICRESLAFETAKREGV 841
H + +L + +KN A GTE D +K+ GIC +S A+
Sbjct: 813 HELTALDHQLPHVKNLHVVAHVAPRGTESKHDRDITLLYKVQPGICDQSFGIHVAELANF 872
Query: 842 PETIIQR 848
PE+++ R
Sbjct: 873 PESVLAR 879
>gi|294783334|ref|ZP_06748658.1| DNA mismatch repair protein MutS [Fusobacterium sp. 1_1_41FAA]
gi|294480212|gb|EFG27989.1| DNA mismatch repair protein MutS [Fusobacterium sp. 1_1_41FAA]
Length = 876
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 149/295 (50%), Gaps = 25/295 (8%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + LSSE++ I L A++ +V + FAHV+
Sbjct: 510 LKEYEEKVITAKSKIEALEYELFKSLSSEIKEHIESLYKLANRIANLDIV---SNFAHVA 566
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTV---DMQSLFLLTG 675
+ +V P E+ N L++ G ++ A GS V N + + +L +LTG
Sbjct: 567 --TKNSYVKP-----EISEENILEIKGGRHPIVESLIASGSYVKNDIVLDEKNNLIILTG 619
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +EM
Sbjct: 620 PNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEM 679
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
+E+ SI+ T +S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 680 TEVASILNNATEKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTE 739
Query: 795 LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A + + V ++V G +S E A+ GVP+ ++ R+
Sbjct: 740 LEKELERAINFRVEVKENGKNVVFLREIVKGGADKSYGIEVARLSGVPKDVLNRS 794
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN--PFGGLRPESIPKAGCPVVNLRQ 107
+ K ++ E+L+ R+GDFYE DA I + GL + + +P AG P ++
Sbjct: 13 KIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYSV I E+V+ P A R ++ PG+
Sbjct: 73 YIAKLVEKGYSVAICEQVEDPKAATGIVKREVTRVITPGT 112
>gi|448348704|ref|ZP_21537552.1| DNA mismatch repair protein MutS [Natrialba taiwanensis DSM 12281]
gi|445642365|gb|ELY95433.1| DNA mismatch repair protein MutS [Natrialba taiwanensis DSM 12281]
Length = 901
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L ++TGPN GKS+ +R + LL G VPAESA + D I + + D A G
Sbjct: 655 RRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAESARLTPVDRIFTRVGASDDIAGG 714
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +
Sbjct: 715 RSTFMVEMDELATILRDADERSLVLLDEVGRGTSTADGLAIAQAITEHLHDEVGATTLFA 774
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L + A + DG+ V ++ G S E A GVPE ++
Sbjct: 775 THHHPLTELADDLPAAFTLHFAVDQTDGEVVFHHEIEPGAATGSYGVEVATAAGVPEAVV 834
Query: 847 QRAEDL 852
R+ +L
Sbjct: 835 DRSREL 840
>gi|294650961|ref|ZP_06728302.1| DNA mismatch repair protein MutS [Acinetobacter haemolyticus ATCC
19194]
gi|292823142|gb|EFF82004.1| DNA mismatch repair protein MutS [Acinetobacter haemolyticus ATCC
19194]
Length = 879
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 13/281 (4%)
Query: 575 EAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD 634
E+ A A+ K+L L EL+ I L S + L + R W P
Sbjct: 530 ESRALAREKLL--FESLLDELRQNIAQLQMMSAAIAYIDVLANFAHQARFNNWARP---- 583
Query: 635 IELDGANCLKMN-GLSPY--WFDAAEGSAVHNTVDMQS-LFLLTGPNGGGKSSLLRSICA 690
E C+K++ G P + A + +D Q + ++TGPN GGKS+ +R
Sbjct: 584 -EFTPETCIKIHAGRHPVVEALNKAPFTPNDTFLDPQHRMAIITGPNMGGKSTFMRQTAL 642
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
SLL CG VPA+SA + D I + S D + GKS+F VEM+E I+ TS+SL
Sbjct: 643 ISLLAYCGSYVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSL 702
Query: 751 VLIDEICRGTETAKGTCIA-GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809
VL+DE+ RGT T G +A +++ + CL + +TH + L + Y
Sbjct: 703 VLMDEVGRGTSTYDGLSLAWACVLDLTKRVKCLCLFATHYFELTELSSETGIDNYHVTAQ 762
Query: 810 EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
E L+G + K+ G +S + AK G+P +I+ A+
Sbjct: 763 E-LNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQ 802
>gi|431744049|ref|ZP_19532921.1| DNA mismatch repair protein mutS [Enterococcus faecium E2071]
gi|430605677|gb|ELB43059.1| DNA mismatch repair protein mutS [Enterococcus faecium E2071]
Length = 881
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 143/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISVADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P L D L +G P + N+V+M + + L
Sbjct: 552 ATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHG 791
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P +++RA D
Sbjct: 727 LTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|309805987|ref|ZP_07700013.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV
03V1-b]
gi|308167590|gb|EFO69743.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV
03V1-b]
Length = 854
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|435848119|ref|YP_007310369.1| DNA mismatch repair protein MutS [Natronococcus occultus SP4]
gi|433674387|gb|AGB38579.1| DNA mismatch repair protein MutS [Natronococcus occultus SP4]
Length = 895
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N D+ + L ++TGPN GKS+ +R + LL G VPA+SA I D I
Sbjct: 625 SFVPNGADLSPDRRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAKSARISPVDRIF 684
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D A G+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E
Sbjct: 685 TRVGASDDIAGGRSTFMVEMDELATILREADERSLVLLDEVGRGTSTADGLAIAQAITEH 744
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
L D +G + +TH H + L ++ A E +G+ V ++ G S E
Sbjct: 745 LHDEVGATTLFATHHHPLTELAEELPAAFTLHFEVEQREGEVVFHHEIAPGSATGSYGVE 804
Query: 835 TAKREGVPETIIQRAEDL 852
A GVPE +++R+ +L
Sbjct: 805 VATAAGVPEDVVERSREL 822
>gi|357235483|ref|ZP_09122826.1| putative DNA mismatch repair protein MutS [Streptococcus criceti
HS-6]
gi|356883465|gb|EHI73665.1| putative DNA mismatch repair protein MutS [Streptococcus criceti
HS-6]
Length = 853
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 1/198 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G V AESA++P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLALTVVMAQIGSFVAAESANLPIFDAIYTRIGAADDLISGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + D +G + +TH H
Sbjct: 659 MVEMMEANMAIQRASKRSLILFDELGRGTATYDGMALAQAIIEHIHDRVGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L + + + T DG K+ DG +S AK G+P ++QRA
Sbjct: 719 ELTELSTTLTHLVNVHVATLEKDGDVTFLHKITDGPADKSYGVHVAKIAGLPRDLLQRAT 778
Query: 851 DLYIACGVNCVMIAAREQ 868
+ + V + ++E+
Sbjct: 779 SILTDLEAHSVSLTSQEK 796
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKESYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADHPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P +A R + PG+
Sbjct: 72 AQQYIDVLVDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|414156453|ref|ZP_11412755.1| DNA mismatch repair protein mutS [Streptococcus sp. F0442]
gi|410870100|gb|EKS18059.1| DNA mismatch repair protein mutS [Streptococcus sp. F0442]
Length = 849
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 4/196 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S + N++ M Q + L+TGPN GKS+ +R + +L G VPA+ A +P FDAI
Sbjct: 583 SYIPNSIFMDEEQDIQLITGPNMSGKSTYMRQLAIIVILAQIGSYVPAQKAELPIFDAIY 642
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + T +SL+L DE+ RGT T G +A SIIE
Sbjct: 643 TRIGAADDLVSGQSTFMVEMMEANQAIRKATPQSLILFDELGRGTATYDGMALAQSIIEY 702
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ D G + +TH H + +L + + T DGQ K+ G +S
Sbjct: 703 IHDRTGAKTLFATHYHELTALSETLSRLENVHVATLERDGQVTFLHKIEPGPADKSYGIH 762
Query: 835 TAKREGVPETIIQRAE 850
AK G+PE ++QRA+
Sbjct: 763 VAKIAGLPEALLQRAD 778
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|433590929|ref|YP_007280425.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|448334462|ref|ZP_21523637.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|433305709|gb|AGB31521.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|445619794|gb|ELY73311.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
Length = 910
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
D + L ++TGPN GKS+ +R + LL G VPA +A + D I + + D
Sbjct: 649 TDDRRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPASAARLTPVDRIFTRVGASDDI 708
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG 783
A G+S+F VEM E+ +I+ +LVL+DE+ RGT TA G IA +I E L D +G
Sbjct: 709 AGGRSTFMVEMDELATILREADENALVLLDEVGRGTSTADGMAIAQAITEHLHDRVGATT 768
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+ +TH H + L + A E +DG+ V ++ G S E A GVP+
Sbjct: 769 LFATHHHPLTELADDLAAAFTLHFEVEQVDGEVVFHHEIAPGAATGSYGVEVATAAGVPD 828
Query: 844 TIIQRAEDLYIACGVNC 860
+++ RA +L A +
Sbjct: 829 SVVDRARELVAAADADT 845
>gi|410478622|ref|YP_006766259.1| MutS family mismatch repair ATPase [Leptospirillum ferriphilum
ML-04]
gi|424867039|ref|ZP_18290852.1| DNA mismatch repair protein (MutS) [Leptospirillum sp. Group II
'C75']
gi|124515687|gb|EAY57196.1| DNA mismatch repair protein (MutS) [Leptospirillum rubarum]
gi|387222379|gb|EIJ76828.1| DNA mismatch repair protein (MutS) [Leptospirillum sp. Group II
'C75']
gi|406773874|gb|AFS53299.1| putative MutS family mismatch repair ATPase [Leptospirillum
ferriphilum ML-04]
Length = 843
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 3/198 (1%)
Query: 658 GSAVHNTVDMQS--LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N VD+ +LTGPN GKS+ +R I ++ G VPA+ A +P D I+
Sbjct: 600 ASFVPNDVDVGQGEFIILTGPNMAGKSTYMRMIALIQIMAQAGAPVPADRARVPLVDRIL 659
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D +G+S+F VEM+E+ I+ +SRSLVL+DE+ RGT T G +A SI E
Sbjct: 660 TRVGASDHILEGESTFMVEMNEMSRILNEASSRSLVLLDEVGRGTSTFDGMALAWSISEF 719
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ D I C + +TH H + L K + D + + ++ G S +
Sbjct: 720 IHDRIRCRTLFATHYHELHQLATKRSRVRNLHVSVAVRDRKIIFHHRISPGHTSRSYGVD 779
Query: 835 TAKREGVPETIIQRAEDL 852
A+ G+PE +++RA D+
Sbjct: 780 VARLAGIPEVVVERAFDI 797
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAGLN--PFGGLRPESIPKAGCPVVNLRQTLDDLTRNG 116
+LL R+GDFYE G A + GL RP +P G P +L L L G
Sbjct: 33 LLLFRLGDFYELFGEQAETVSRVLGLTLTTRDRNRPNPLPMCGIPARSLDLYLPRLVYEG 92
Query: 117 YSVCIVEEV--QGPTQA 131
+SV I E+V QG T+
Sbjct: 93 FSVAIAEQVATQGDTEG 109
>gi|419823792|ref|ZP_14347326.1| DNA mismatch repair protein MutS [Bacillus atrophaeus C89]
gi|388472031|gb|EIM08820.1| DNA mismatch repair protein MutS [Bacillus atrophaeus C89]
Length = 860
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 138/287 (48%), Gaps = 22/287 (7%)
Query: 579 KAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--------FAHVSEGRRRKWVFP 630
+A+ + EL L +EL+ KI + + L + K + FA +SE R ++ P
Sbjct: 503 EAENNICELEYELFAELREKIKM--YIPRLQKLAKQMSELDALQCFATISENRH--YIKP 558
Query: 631 ALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDM---QSLFLLTGPNGGGKSSLLR 686
+ ++ ++G P + V N +M + L+TGPN GKS+ +R
Sbjct: 559 VFSEDHVEV-----IDGRHPVVEKVMDSQEYVPNNCEMGESSQMLLITGPNMSGKSTYMR 613
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
I S+L G VPA+ A +P FD I + + D G+S+F VEM E ++ + T
Sbjct: 614 QIALISILAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNAT 673
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
SL+L DEI RGT T G +A +IIE + D+IG + STH H + L +
Sbjct: 674 KNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEENLSQLKNV 733
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ E +G V ++ +G +S A+ +P+ +I RA+D+
Sbjct: 734 HVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDDLIARAQDI 780
>gi|315653064|ref|ZP_07905992.1| DNA mismatch repair protein HexA [Lactobacillus iners ATCC 55195]
gi|315489599|gb|EFU79233.1| DNA mismatch repair protein HexA [Lactobacillus iners ATCC 55195]
Length = 854
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|448322528|ref|ZP_21511998.1| DNA mismatch repair protein MutS [Natronococcus amylolyticus DSM
10524]
gi|445601286|gb|ELY55275.1| DNA mismatch repair protein MutS [Natronococcus amylolyticus DSM
10524]
Length = 897
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L ++TGPN GKS+ +R + LL G VPAESA I D I + + D A G
Sbjct: 643 RRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAESARISPVDRIFTRVGASDDIAGG 702
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F +EM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +
Sbjct: 703 RSTFMIEMDELATILREADGRSLVLLDEVGRGTSTADGLAIAQAITEHLHDEVGATTLFA 762
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L + A E +G+ V ++ G S E A GVPE ++
Sbjct: 763 THHHPLTELAEALPAAFTLHFEVEQREGEVVFHHEIAPGAATGSYGVEVATAAGVPEDVV 822
Query: 847 QRAEDL 852
+R+ +L
Sbjct: 823 ERSREL 828
>gi|356572787|ref|XP_003554547.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Glycine max]
Length = 1269
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 6/190 (3%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D S LLTGPN GGKS+LLR +C +L G VPAES + D I + M + D+
Sbjct: 1013 DHASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIM 1072
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F E+SE S++++ T SLV +DE+ RGT T+ G IA S++E L + C G+
Sbjct: 1073 AGQSTFLTELSETASMLSSATCNSLVALDELGRGTATSDGQAIAESVLEHLVRKVQCRGL 1132
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-----QTVPTWKLVDGICRESLAFETAKRE 839
STH H + LK M + G + ++L G C +S A+
Sbjct: 1133 FSTHYHRLAVDYLKDPKVCLCHMACQVGSGIAGLDEVTFLYRLTPGACPKSYGVNVARIA 1192
Query: 840 GVPETIIQRA 849
G+P +++Q+A
Sbjct: 1193 GLPTSVLQKA 1202
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 97
SL +G W +FKSK +VL ++G FYE +DA + + L G +P
Sbjct: 325 SLSDGQKQW--WEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGDQPH---- 378
Query: 98 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P N ++ L R GY V +VE+ P Q R+
Sbjct: 379 CGFPEKNFSMNVEKLARKGYRVLVVEQTDTPEQLELRR 416
>gi|325913769|ref|ZP_08176130.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 60-B]
gi|325476969|gb|EGC80120.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 60-B]
Length = 854
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|395783618|ref|ZP_10463467.1| DNA mismatch repair protein mutS [Bartonella melophagi K-2C]
gi|395425740|gb|EJF91900.1| DNA mismatch repair protein mutS [Bartonella melophagi K-2C]
Length = 908
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 23/308 (7%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T ++ E R A A LE+ L +E+ ++ + AS L + A
Sbjct: 537 FTTTELVELESRIAHAANHAITLELEIFDTLVNEITAHVDFIRKASEALAVLDVSVALAH 596
Query: 621 EGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDA----AEGSAVHNTVDMQS---- 669
+ + P + D ++ G G P A A S V N D+ +
Sbjct: 597 LAEEQGYCRPKIDDSLTFQITG-------GRHPVVEQALRKQATESFVANDCDLSTQQDH 649
Query: 670 ----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
++LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A
Sbjct: 650 QYAAIWLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPAASAHIGVVDRLFSRVGASDDLA 709
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGI 784
G+S+F +EM E +I+ ++RSLV++DEI RGT T G IA + +E L + C I
Sbjct: 710 RGRSTFMMEMVETATILNHASNRSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNHCRAI 769
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
++TH H + +L K+ M + +G V ++ G S + AK G+P
Sbjct: 770 LATHFHEMTALTKKLNRLHNVTMKVKNWNGDVVFLHEVTKGAADRSYGVQVAKLAGLPTA 829
Query: 845 IIQRAEDL 852
+I RA D+
Sbjct: 830 VIARATDV 837
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G P+ +
Sbjct: 29 QYIEIKAVNSDSLLFYRMGDFYELFFNDAIEASQALGITLTTRGKHLGEDIPMCGVPIHS 88
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+ + P +A+ R S+ +
Sbjct: 89 ADDYLQKLIACGYRVAVCEQTEDPAEAKKRGSKSV 123
>gi|449094390|ref|YP_007426881.1| DNA mismatch repair protein [Bacillus subtilis XF-1]
gi|449028305|gb|AGE63544.1| DNA mismatch repair protein [Bacillus subtilis XF-1]
Length = 858
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAGLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPGD 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LIARAQDI 780
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|225869421|ref|YP_002745369.1| DNA mismatch repair protein MutS [Streptococcus equi subsp.
zooepidemicus]
gi|259511175|sp|C0MGC5.1|MUTS_STRS7 RecName: Full=DNA mismatch repair protein MutS
gi|225702697|emb|CAX00811.1| DNA mismatch repair protein MutS [Streptococcus equi subsp.
zooepidemicus]
Length = 851
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 96/183 (52%), Gaps = 1/183 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + ++ G V AESAS+P FDAI + + D G+
Sbjct: 596 SIQLITGPNMSGKSTYMRQLALTVIMAQIGSFVAAESASLPLFDAIFTRIGAADDLISGQ 655
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + T SL+L DE+ RGT T G +A SIIE + D +G + +T
Sbjct: 656 STFMVEMMEANHAIKRATPHSLILFDELGRGTATYDGMALAQSIIEYIHDRVGAKTMFAT 715
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ + T DG K+ +G +S A+ G+PE ++
Sbjct: 716 HYHELTELSTKLTKLVNVHVATLEKDGNVTFLHKIAEGPADKSYGIHVARIAGLPEDLLA 775
Query: 848 RAE 850
RA+
Sbjct: 776 RAD 778
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + GL IP AG P +
Sbjct: 12 QYLDIKKNYPDAFLLFRMGDFYELFYEDAVKAAQILEIGLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI---------SGHAHPGSPYVFGLVG 155
++Q +D L G+ V I E+++ P QA R + + P SP F LV
Sbjct: 72 VQQYIDVLIDLGHKVAIAEQMEDPKQAVGVVKREVVQVITPGTAVDSSRPDSPNNF-LVA 130
Query: 156 IDHD 159
+D D
Sbjct: 131 VDFD 134
>gi|317485559|ref|ZP_07944436.1| DNA mismatch repair protein MutS [Bilophila wadsworthia 3_1_6]
gi|316923239|gb|EFV44448.1| DNA mismatch repair protein MutS [Bilophila wadsworthia 3_1_6]
Length = 903
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 145/305 (47%), Gaps = 19/305 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKA---KVLELLRGLSSELQTKINILVFASMLLVIGKAL 615
E F+T++++E E+ A + K+ K+ + LRG +E + +I L A ML +
Sbjct: 527 ERFTTVRLKELEEKLLSAADRRKSLEYKLFQQLRGALAEARPRI--LFMADMLAQLD--Y 582
Query: 616 FAHVSE-GRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSL 670
+ ++E R W P L G + G P E + V N + M + L
Sbjct: 583 WQSLAETAVRHNWSRPVLHT----GQSITIREGRHPVVEGIIGEAAFVPNDLHMDEDRRL 638
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS++LR LL G VPA A + D I + + D+ A G+S+
Sbjct: 639 LLITGPNMAGKSTVLRQTALICLLAQMGSFVPAREAQLGLCDRIFSRVGASDNLAQGQST 698
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI---VST 787
F VEM E I+ T RSLV++DEI RGT T G +A ++ E L I +T
Sbjct: 699 FMVEMMETARILRQATKRSLVILDEIGRGTSTFDGLALAWAVAEELARRAGGSIRTLFAT 758
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L KI + +G+ V +L+ G S E A+ GVP+ ++Q
Sbjct: 759 HYHELTALEGKIPGVHTMNIAIREWNGEIVFLRRLIPGPSDRSYGIEVARLAGVPQPVVQ 818
Query: 848 RAEDL 852
RA ++
Sbjct: 819 RAREI 823
>gi|301311772|ref|ZP_07217697.1| DNA mismatch repair protein MutS [Bacteroides sp. 20_3]
gi|423337430|ref|ZP_17315174.1| DNA mismatch repair protein mutS [Parabacteroides distasonis
CL09T03C24]
gi|300830332|gb|EFK60977.1| DNA mismatch repair protein MutS [Bacteroides sp. 20_3]
gi|409237259|gb|EKN30059.1| DNA mismatch repair protein mutS [Parabacteroides distasonis
CL09T03C24]
Length = 870
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 143/304 (47%), Gaps = 25/304 (8%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSEL-----------QTKINILVFASMLLVIGKA 614
+ E L+ Y E A+ K+L L L +EL Q N++ LL KA
Sbjct: 501 ITEELKEYEEKILGAEEKILALETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKA 560
Query: 615 LFAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
A+ K++ P + D I++ G + P + + V+ + Q +
Sbjct: 561 AEAN-------KYIRPVVSDSDKIDIKGGRHPVIEKQLPLG-EPYIANDVYLDDEKQQII 612
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+LLR +L+ G VPAESA I D I + + D+ + G+S+F
Sbjct: 613 IITGPNMAGKSALLRQTALITLMAQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTF 672
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTH 788
VEM+E I+ TSRSLVL DE+ RGT T G IA +I+E + N + +TH
Sbjct: 673 MVEMNEASDILNNMTSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATH 732
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + + K + + + + + KL+ G S AK G+P++I++R
Sbjct: 733 YHELNEMERAFKRIKNYNVSVKEVGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKR 792
Query: 849 AEDL 852
+ ++
Sbjct: 793 SNEI 796
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL------NPFGGLRPES 94
E L + K+K P +LL RVGDFYE G DA I E G+ N G +
Sbjct: 6 ETPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVG----QH 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLV 154
+ AG P L L L R G V I ++++ P + R I+ PG V
Sbjct: 62 VEMAGFPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG-------V 114
Query: 155 GIDHDLDFPEPMPVIGVSRSAKGYCIISILE 185
I+ ++ + + AK C IS L+
Sbjct: 115 SINDNILNHKENNFLASIHFAKEVCGISFLD 145
>gi|167037586|ref|YP_001665164.1| DNA mismatch repair protein MutS [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116001|ref|YP_004186160.1| DNA mismatch repair protein MutS [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856420|gb|ABY94828.1| DNA mismatch repair protein MutS [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929092|gb|ADV79777.1| DNA mismatch repair protein MutS [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 867
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 149/287 (51%), Gaps = 24/287 (8%)
Query: 580 AKAKVLELLRGLSSELQTKINILV---------FASMLLVIGKALFAHVSEGRRRKWVFP 630
A+ K++EL L +E++ K+ + + A++ ++I FA V+E R ++ P
Sbjct: 519 AEEKLIELEYQLFNEIREKVELQIVRIQNTAKYIATIDVLIS---FAEVAETNR--YIKP 573
Query: 631 ALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLR 686
+ D ++ + + G P ++ S V N +D+ + ++TGPN GKS+ +R
Sbjct: 574 IV-----DYSDRIVIKEGRHPVIETISDESFVANDIDIGPENPIMIITGPNMAGKSTYMR 628
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ L+ G VPA A I D I + + D G+S+F VEMSE+ +I+ + T
Sbjct: 629 QVALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSAT 688
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
S+SL+++DE+ RGT T G IA ++IE + + I + +TH H + L K+K
Sbjct: 689 SKSLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNY 748
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ E + + K+V G +S + +K G+P +I++RA+++
Sbjct: 749 NVSVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEI 795
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+ +L R+GDFYE DA I +E A G E P AG P
Sbjct: 9 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTE-ERAPMAGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P +A+ R + PG+
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKGLVKRDVVRIYTPGT 111
>gi|2104549|gb|AAB57798.1| AGAA.3 [Arabidopsis thaliana]
Length = 1362
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 147/316 (46%), Gaps = 20/316 (6%)
Query: 551 SKGRKVGEEWFSTLK-VEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLL 609
S + V W T+K + + L + A + + L G E Q K LV A+ L
Sbjct: 989 SSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAEL 1048
Query: 610 --VIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA---AEGSAVHNT 664
+I A + EG R + P + DG L GL GS V N
Sbjct: 1049 DVLISLAFASDSYEGVRCR---PVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNN 1105
Query: 665 VDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V + S LLTGPN GGKS+LLR +C A +L G VPAE+ + D I + M
Sbjct: 1106 VKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMG 1165
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDN 778
+ D G+S+F E+SE ++T+ T SLV++DE+ RGT T+ G IA S++E ++
Sbjct: 1166 AKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEK 1225
Query: 779 IGCLGIVSTHLHGI---FSLPLKIKNAAYKAMGTEYLDG--QTVPTWKLVDGICRESLAF 833
+ C G STH H + + K+ E + G + ++L G C +S
Sbjct: 1226 VQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGV 1285
Query: 834 ETAKREGVPETIIQRA 849
A+ G+P+ ++QRA
Sbjct: 1286 NVARLAGLPDYVLQRA 1301
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 13 PSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIG 72
P TL+L L G V +G+L++ WE FK+K +V+ ++G FYE
Sbjct: 371 PRTLYLPPDF-VKKLTGGQVRRAHGNLRQW---WE---FKAKHMDKVVFFKMGKFYELFE 423
Query: 73 IDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQAR 132
+DA + + + G +P G P N ++ L R GY V +VE+ + P Q
Sbjct: 424 MDAHVGAKELDIQYMKGEQPH----CGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLE 479
Query: 133 SRK 135
R+
Sbjct: 480 QRR 482
>gi|421525640|ref|ZP_15972250.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum ChDC
F128]
gi|402258209|gb|EJU08681.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum ChDC
F128]
Length = 877
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 31/298 (10%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 510 LKEYEEKVITAKSKIEALEYELFKKLTSEIKEYIDSLYKLANRIANLDIV---SNFAHIA 566
Query: 621 EGRRRKWVFPALKDI---ELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLT 674
+ +V P + D+ E+ G + L P G+ V N + + +L +LT
Sbjct: 567 --TKNSYVKPEIDDVDILEIKGGRHPIVENLIP------SGTYVKNDIILDEKNNLIILT 618
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +E
Sbjct: 619 GPNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLE 678
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF 793
M+E+ SI+ + T +S V++DEI RGT T G IA +I E + N IG I +TH H +
Sbjct: 679 MTEVASILNSATKKSFVVLDEIGRGTSTYDGISIATAITEYIHNVIGAKTIFATHYHELT 738
Query: 794 SLPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 739 ELEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 794
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP--ESIPKAGCPVVNLRQ 107
+ K ++ E+L+ R+GDFYE DA + GL R + +P AG P ++
Sbjct: 13 KIKEEYKNEILMFRLGDFYEMFFEDAKTASKELGLTLTKRNREKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYSV I E+V+ P A R ++ PG+
Sbjct: 73 YIAKLVEKGYSVAICEQVEDPKSATGIVKREVTRVITPGT 112
>gi|225871419|ref|YP_002747366.1| DNA mismatch repair protein MutS [Streptococcus equi subsp. equi
4047]
gi|254766638|sp|C0MAS5.1|MUTS_STRE4 RecName: Full=DNA mismatch repair protein MutS
gi|225700823|emb|CAW95529.1| DNA mismatch repair protein MutS [Streptococcus equi subsp. equi
4047]
Length = 851
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 96/183 (52%), Gaps = 1/183 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + ++ G V AESAS+P FDAI + + D G+
Sbjct: 596 SIQLITGPNMSGKSTYMRQLALTVIMAQIGSFVAAESASLPLFDAIFTRIGAADDLISGQ 655
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + T SL+L DE+ RGT T G +A SIIE + D +G + +T
Sbjct: 656 STFMVEMMEANHAIKRATPHSLILFDELGRGTATYDGMALAQSIIEYIHDRVGAKTMFAT 715
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ + T DG K+ +G +S A+ G+PE ++
Sbjct: 716 HYHELTELSTKLTKLVNVHVATLEKDGNVTFLHKIAEGPADKSYGIHVARIAGLPEDLLA 775
Query: 848 RAE 850
RA+
Sbjct: 776 RAD 778
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + GL IP AG P +
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQILEIGLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI---------SGHAHPGSPYVFGLVG 155
++Q +D L G+ V I E+++ P QA R + + P SP F LV
Sbjct: 72 VQQYIDVLIDLGHKVAIAEQMEDPKQAVGVVKREVVQVITPGTAVDSSRPDSPNNF-LVA 130
Query: 156 IDHD 159
+D D
Sbjct: 131 VDFD 134
>gi|392988094|ref|YP_006486687.1| DNA mismatch repair protein MutS [Enterococcus hirae ATCC 9790]
gi|392335514|gb|AFM69796.1| DNA mismatch repair protein MutS [Enterococcus hirae ATCC 9790]
Length = 870
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIKPLQILAKSISTADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P + D L G P + N+VDM + + L
Sbjct: 552 ATISE--RYQYVRPEMVS---DRHQLLIQEGRHPVVEKVLGHQEYIPNSVDMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAQKAILPIFDRIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E + TS SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRHATSNSLILFDELGRGTATYDGMALAQAIIEYIHQHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P ++ RA D
Sbjct: 727 LTVLEEELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLARAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.5 bits (101), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I+A ++E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAINASQILELT-LTSRNRNADEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDILIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|386714417|ref|YP_006180740.1| DNA mismatch repair protein MutS [Halobacillus halophilus DSM 2266]
gi|384073973|emb|CCG45466.1| DNA mismatch repair protein MutS [Halobacillus halophilus DSM 2266]
Length = 859
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+ L+TGPN GKS+ +R + ++LG G +P ESA++P FD I + + D G+
Sbjct: 601 DVLLITGPNMSGKSTYMRQLALIAILGQMGSFIPCESATLPIFDQIFTRIGAADDLVSGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ T S++L+DEI RGT T G +A SI+E + ++I + ST
Sbjct: 661 STFMVEMLEANHALSNATEHSMILLDEIGRGTSTYDGMALAQSIVEHIHEHIRAKTLFST 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + SL +++ + E +G V ++ DG ES AK +P ++I
Sbjct: 721 HYHELTSLEDQLERLKNVHVRAEEYEGNVVFLHQIKDGPADESYGIHVAKLADLPSSLIN 780
Query: 848 RA 849
RA
Sbjct: 781 RA 782
>gi|116333843|ref|YP_795370.1| DNA mismatch repair protein MutS [Lactobacillus brevis ATCC 367]
gi|122269470|sp|Q03R33.1|MUTS_LACBA RecName: Full=DNA mismatch repair protein MutS
gi|116099190|gb|ABJ64339.1| DNA mismatch repair protein MutS [Lactobacillus brevis ATCC 367]
Length = 892
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 1/186 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D ++ L+TGPN GKS+ +R + ++ G VPAE+A +P FD I + + D
Sbjct: 598 DQTNILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAEAAEMPIFDQIFTRIGAADDLI 657
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGI 784
G+S+F VEM E ++ T+ SL+L DEI RGT T G +A +IIE + N + +
Sbjct: 658 SGQSTFMVEMQEANRALSHATANSLILFDEIGRGTATYDGMALAQAIIEYVHNRVHAKTL 717
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + +L +K +G DG V ++ G +S AK G+P
Sbjct: 718 FSTHYHELTALDESLKQLKNVHVGAVERDGDLVFLHQMQPGPADKSYGIHVAKLAGMPTK 777
Query: 845 IIQRAE 850
++QRAE
Sbjct: 778 LLQRAE 783
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDAC---ILVE-------YAGLNPFGGLRPESIPKAG 99
+ K ++P L R+GDFYE DA L+E ++ NP IP G
Sbjct: 15 KIKDQYPDAFLFYRLGDFYEMFNEDAVKGSQLLELTLTTRSHSAKNP--------IPMCG 66
Query: 100 CPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVG 155
P ++ +D L GY V I E+++ P A+ R + PG+ G G
Sbjct: 67 VPHKAVQSYIDILVDQGYKVAICEQMEDPKLAKGMVKREVIQLVTPGTQTDTGAAG 122
>gi|333383386|ref|ZP_08475047.1| DNA mismatch repair protein mutS [Dysgonomonas gadei ATCC BAA-286]
gi|332827835|gb|EGK00570.1| DNA mismatch repair protein mutS [Dysgonomonas gadei ATCC BAA-286]
Length = 870
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 141/308 (45%), Gaps = 33/308 (10%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSEL-----------QTKINILVFASMLLVIGKA 614
+ + L+ Y E A+ K+L L L ++L Q N++ LL K
Sbjct: 502 ITQELKDYEEKILGAEEKILSLETALFNDLVLSLVEYIPTIQVNANLIAQTDCLLSFAKV 561
Query: 615 LFAHVSEGRRRKWVFPALKDIELDGANCLKM-NGLSPYWFDAAEGSAVHNTVDM------ 667
+ K++ P E++ + LK+ NG P + T D+
Sbjct: 562 -------AKENKYIRP-----EINDTDALKIKNGRHPVIEKQLPLGESYITNDVFLDSNS 609
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKS+LLR +L+ G VPAESA I D I + + D+ + G
Sbjct: 610 QQIIIITGPNMAGKSALLRQTALITLMAQAGSFVPAESAQIGLVDKIFTRVGASDNISLG 669
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGI 784
+S+F VEM+E I+ + RSLVL DE+ RGT T G IA +I+E + +
Sbjct: 670 ESTFMVEMNEAADILNNLSPRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKAKTL 729
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + + K + + +D + + KLV G S AK G+P++
Sbjct: 730 FATHYHELNEMEKSFKRIKNFNVSVKEMDNRIIFLRKLVPGGSEHSFGIHVAKMAGMPQS 789
Query: 845 IIQRAEDL 852
I++RA ++
Sbjct: 790 IVKRANNI 797
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKA 98
E L + + KSK P +LL RVGDFYE DA E G L + + A
Sbjct: 7 ETPLMKQYFEIKSKHPDAILLFRVGDFYETFSQDAIDAAEITGITLTRRANGSAQFVELA 66
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDH 158
G P L L L R G V I ++++ P ++ R I+ PG V I+
Sbjct: 67 GFPHHALDTYLPKLVRAGKRVAICDQLEDPKLTKTIVKRGITELVTPG-------VSIND 119
Query: 159 DLDFPEPMPVIGVSRSAKGYCIISILE-TMKTYSLEDGLTE--DALVTKL 205
++ + + AK C IS+L+ + Y + +G E D L+T
Sbjct: 120 NILNHKENNFLCAVHFAKSSCGISLLDISTGEYLVAEGTKEYVDKLLTNF 169
>gi|297814117|ref|XP_002874942.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp.
lyrata]
gi|297320779|gb|EFH51201.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp.
lyrata]
Length = 1326
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 11/203 (5%)
Query: 658 GSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
GS V N V + S LLTGPN GGKS+LLR +C A +L G VPAE+ + D
Sbjct: 1063 GSFVPNNVKIGGSEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVD 1122
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
I + M + D G+S+F E+SE ++T+ T SLV++DE+ RGT T+ G IA S+
Sbjct: 1123 RICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESV 1182
Query: 773 IET-LDNIGCLGIVSTHLHGI---FSLPLKIKNAAYKAMGTEYLDG--QTVPTWKLVDGI 826
+E +D + C G+ STH H + + K+ E + G + ++L G
Sbjct: 1183 LEHFIDKVQCRGLFSTHYHRLSVDYQTNPKVSLCHMACQVGEGIGGVEEVTFLYRLTPGA 1242
Query: 827 CRESLAFETAKREGVPETIIQRA 849
C +S A+ G+P+ ++QRA
Sbjct: 1243 CPKSYGVNVARLAGLPDYVLQRA 1265
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
L G W +FKSK +V+ ++G FYE +DA + + + G +P
Sbjct: 381 LTGGQRQW--WEFKSKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPH----C 434
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P N ++ L R GY V +VE+ + P Q R+
Sbjct: 435 GFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRR 471
>gi|195978976|ref|YP_002124220.1| DNA mismatch repair protein MutS [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975681|gb|ACG63207.1| DNA mismatch repair protein MutS [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 837
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 96/183 (52%), Gaps = 1/183 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + ++ G V AESAS+P FDAI + + D G+
Sbjct: 587 SIQLITGPNMSGKSTYMRQLALTVIMAQIGSFVAAESASLPLFDAIFTRIGAADDLISGQ 646
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + T SL+L DE+ RGT T G +A SIIE + D +G + +T
Sbjct: 647 STFMVEMMEANHAIKRATPHSLILFDELGRGTATYDGMALAQSIIEYIHDRVGSKTMFAT 706
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ + T DG K+ +G +S A+ G+PE ++
Sbjct: 707 HYHELTELSTKLTKLVNVHVATLEKDGNVTFLHKIAEGPADKSYGIHVARIAGLPEDLLA 766
Query: 848 RAE 850
RA+
Sbjct: 767 RAD 769
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + GL IP AG P +
Sbjct: 3 QYLDIKKNYPDAFLLFRMGDFYELFYEDAVKAAQILEIGLTSRNKNADNPIPMAGVPYHS 62
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI---------SGHAHPGSPYVFGLVG 155
++Q +D L G+ V I E+++ P QA R + + P SP F LV
Sbjct: 63 VQQYIDVLIDLGHKVAIAEQMEDPKQAVGVVKREVVQVITPGTAVDSSRPDSPNNF-LVA 121
Query: 156 IDHD 159
+D D
Sbjct: 122 VDFD 125
>gi|1002520|gb|AAB19235.1| MutS [Bacillus subtilis subsp. subtilis str. 168]
Length = 852
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 587 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 646
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 647 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 706
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P
Sbjct: 707 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPGD 766
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 767 LIARAQDI 774
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 4 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 64 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 106
>gi|262383129|ref|ZP_06076266.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_33B]
gi|262296007|gb|EEY83938.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_33B]
Length = 870
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 143/304 (47%), Gaps = 25/304 (8%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSEL-----------QTKINILVFASMLLVIGKA 614
+ E L+ Y E A+ K+L L L +EL Q N++ LL KA
Sbjct: 501 ITEELKEYEEKILGAEEKILALETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKA 560
Query: 615 LFAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
A+ K++ P + D I++ G + P + + V+ + Q +
Sbjct: 561 AEAN-------KYIRPVVSDSDKIDIKGGRHPVIEKQLPLG-EPYIANDVYLDDEKQQII 612
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+LLR +L+ G VPAESA I D I + + D+ + G+S+F
Sbjct: 613 IITGPNMAGKSALLRQTALITLMAQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTF 672
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTH 788
VEM+E I+ TSRSLVL DE+ RGT T G IA +I+E + N + +TH
Sbjct: 673 MVEMNEASDILNNMTSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATH 732
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + + K + + + + + KL+ G S AK G+P++I++R
Sbjct: 733 YHELNEMERAFKRIKNYNVSVKEVGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKR 792
Query: 849 AEDL 852
+ ++
Sbjct: 793 SNEI 796
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL------NPFGGLRPES 94
E L + K+K P +LL RVGDFYE G DA I E G+ N G +
Sbjct: 6 ETPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVG----QH 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLV 154
+ AG P L L L R G V I ++++ P + R I+ PG V
Sbjct: 62 VEMAGFPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG-------V 114
Query: 155 GIDHDLDFPEPMPVIGVSRSAKGYCIISILE 185
I+ ++ + + AK C IS L+
Sbjct: 115 SINDNILNHKENNFLASIHFAKEVCGISFLD 145
>gi|84999622|ref|XP_954532.1| DNA mismatch repair protein, MutS family [Theileria annulata]
gi|65305530|emb|CAI73855.1| DNA mismatch repair protein, MutS family, putative [Theileria
annulata]
Length = 1279
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 9/206 (4%)
Query: 653 FDAAEGSAVHNTVDMQS-----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707
F+ + + N+V++ + ++TGPN GGKS+LLR I ++G G V +
Sbjct: 972 FNISNNKFIPNSVNIGEGLDGPILIITGPNMGGKSTLLRQIALTIIMGQIGSFVSSVECE 1031
Query: 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTC 767
D+I + + D+ GKS+F VE+ +I SI++ TS SL LIDE+ RGT T GT
Sbjct: 1032 FSIADSIFTRLGASDNILQGKSTFLVELQDISSILSKATSSSLALIDELGRGTSTFDGTA 1091
Query: 768 IAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT---WKLVD 824
IA + +E + IGC + +TH + + N + M + +D +T +KLV
Sbjct: 1092 IAVATLEKISKIGCRCVFTTHFQDVCVFAETLSNVSMFHMAAK-VDEETRSVEFLYKLVP 1150
Query: 825 GICRESLAFETAKREGVPETIIQRAE 850
G+C +S AK +P+ IIQ A+
Sbjct: 1151 GVCPDSHGMHVAKLARIPDHIIQNAK 1176
>gi|383621870|ref|ZP_09948276.1| DNA mismatch repair protein MutS [Halobiforma lacisalsi AJ5]
gi|448702798|ref|ZP_21700155.1| DNA mismatch repair protein MutS [Halobiforma lacisalsi AJ5]
gi|445776891|gb|EMA27867.1| DNA mismatch repair protein MutS [Halobiforma lacisalsi AJ5]
Length = 964
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 105/193 (54%), Gaps = 2/193 (1%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
H T D + L ++TGPN GKS+ +R + LL G VPA+SA + D I + +
Sbjct: 659 AHLTED-RRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAKSARLTPVDRIFTRVGA 717
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNI 779
D A G+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +
Sbjct: 718 SDDIAGGRSTFMVEMDELATILREADERSLVLLDEVGRGTSTADGMAIAQAITEHLHDAV 777
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
G + +TH H + + +++A + DG+ V ++ G S E A
Sbjct: 778 GATTLFATHHHPLTEVADVLEDAFTLHFEVDQEDGEVVFRHEVAPGAATGSYGVEVATAA 837
Query: 840 GVPETIIQRAEDL 852
GVPE++++R+ +L
Sbjct: 838 GVPESVVERSREL 850
>gi|221309579|ref|ZP_03591426.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221313903|ref|ZP_03595708.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318826|ref|ZP_03600120.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323098|ref|ZP_03604392.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
SMY]
gi|255767391|ref|NP_389586.2| DNA mismatch repair protein MutS [Bacillus subtilis subsp. subtilis
str. 168]
gi|321315470|ref|YP_004207757.1| DNA mismatch repair protein MutS [Bacillus subtilis BSn5]
gi|402775947|ref|YP_006629891.1| DNA mismatch repair recognition factor [Bacillus subtilis QB928]
gi|452913973|ref|ZP_21962600.1| DNA mismatch repair protein MutS [Bacillus subtilis MB73/2]
gi|239938876|sp|P49849.3|MUTS_BACSU RecName: Full=DNA mismatch repair protein MutS
gi|225185018|emb|CAB13577.2| DNA mismatch repair recognition factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|320021744|gb|ADV96730.1| DNA mismatch repair protein MutS [Bacillus subtilis BSn5]
gi|402481128|gb|AFQ57637.1| DNA mismatch repair recognition factor [Bacillus subtilis QB928]
gi|407959110|dbj|BAM52350.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 6803]
gi|407964687|dbj|BAM57926.1| DNA mismatch repair protein MutS [Bacillus subtilis BEST7003]
gi|452116393|gb|EME06788.1| DNA mismatch repair protein MutS [Bacillus subtilis MB73/2]
Length = 858
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPGD 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LIARAQDI 780
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|56963952|ref|YP_175683.1| DNA mismatch repair protein MutS [Bacillus clausii KSM-K16]
gi|81678867|sp|Q5WFY3.1|MUTS_BACSK RecName: Full=DNA mismatch repair protein MutS
gi|56910195|dbj|BAD64722.1| DNA mismatch repair protein MutS [Bacillus clausii KSM-K16]
Length = 871
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS V N +D+ + + L+TGPN GGKS+ +R + ++ G VPA A++P FD I
Sbjct: 585 GSYVENDIDLTGDRDMLLITGPNMGGKSTYMRQLALTVVMAQIGSYVPAAEATLPLFDQI 644
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D A G+S+F VEM E + + T SL+L+DEI RGT T G +A +IIE
Sbjct: 645 FTRIGAADDLASGQSTFMVEMLETKDALVKATPHSLILLDEIGRGTSTYDGMALAQAIIE 704
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ + IG + STH H + L + + +G V ++++G S
Sbjct: 705 YIYETIGAKTLFSTHYHELTRLADSLHTLRNVHVSAVEENGTVVFLHQVIEGAADRSYGV 764
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P+ + RAE L
Sbjct: 765 YVAELAGLPKQVTTRAEAL 783
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GLRPESIPKAGCPVVNL 105
+ LQ K+K+ L R+GDFYE DA + + G G + IP G P +
Sbjct: 11 QYLQIKAKYQDAFLFFRLGDFYEMFNEDAIKAAQELEITLTGRGQGEDRIPMCGVPYHSA 70
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY + I E+V+ P A+ R ++ PG+
Sbjct: 71 DSYIARLIDKGYKIAICEQVEDPKTAKGVVKREVTKVLTPGT 112
>gi|418033149|ref|ZP_12671626.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|351469297|gb|EHA29473.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
SC-8]
Length = 858
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPGD 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LIARAQDI 780
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|428279302|ref|YP_005561037.1| DNA mismatch repair protein [Bacillus subtilis subsp. natto
BEST195]
gi|291484259|dbj|BAI85334.1| DNA mismatch repair protein [Bacillus subtilis subsp. natto
BEST195]
Length = 858
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPGD 772
Query: 845 IIQRAEDL 852
+I RA+D+
Sbjct: 773 LIARAQDI 780
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|256838304|ref|ZP_05543814.1| DNA mismatch repair protein MutS [Parabacteroides sp. D13]
gi|256739223|gb|EEU52547.1| DNA mismatch repair protein MutS [Parabacteroides sp. D13]
Length = 869
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 143/304 (47%), Gaps = 25/304 (8%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSEL-----------QTKINILVFASMLLVIGKA 614
+ E L+ Y E A+ K+L L L +EL Q N++ LL KA
Sbjct: 501 ITEELKEYEEKILGAEEKILALETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKA 560
Query: 615 LFAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
A+ K++ P + D I++ G + P + + V+ + Q +
Sbjct: 561 AEAN-------KYIRPVVSDSDKIDIKGGRHPVIEKQLPLG-EPYIANDVYLDDEKQQII 612
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+LLR +L+ G VPAESA I D I + + D+ + G+S+F
Sbjct: 613 IITGPNMAGKSALLRQTALITLMAQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTF 672
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTH 788
VEM+E I+ TSRSLVL DE+ RGT T G IA +I+E + N + +TH
Sbjct: 673 MVEMNEASDILNNMTSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATH 732
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + + K + + + + + KL+ G S AK G+P++I++R
Sbjct: 733 YHELNEMERAFKRIKNYNVSVKEVGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKR 792
Query: 849 AEDL 852
+ ++
Sbjct: 793 SNEI 796
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL------NPFGGLRPES 94
E L + K+K P +LL RVGDFYE G DA I E G+ N G +
Sbjct: 6 ETPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVG----QH 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLV 154
+ AG P L L L R G V I ++++ P + R I+ PG V
Sbjct: 62 VEMAGFPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG-------V 114
Query: 155 GIDHDLDFPEPMPVIGVSRSAKGYCIISILE 185
I+ ++ + + AK C IS L+
Sbjct: 115 SINDNILNHKENNFLASIHFAKEVCGISFLD 145
>gi|169601270|ref|XP_001794057.1| hypothetical protein SNOG_03496 [Phaeosphaeria nodorum SN15]
gi|160705896|gb|EAT88701.2| hypothetical protein SNOG_03496 [Phaeosphaeria nodorum SN15]
Length = 1104
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 10/223 (4%)
Query: 653 FDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
DA + VH + D L+TGPN GGKSS +RS +++G G VPAESA + D
Sbjct: 859 LDAYVPNDVHLSGDATRALLVTGPNMGGKSSYVRSAALIAIMGQIGSYVPAESAKLGMLD 918
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
A+ M + D+ G+S+F VE++E I+ + TSRSL+++DE+ RGT T G IA ++
Sbjct: 919 AVFTRMGALDNMLKGESTFMVELNETADILRSATSRSLIILDELGRGTSTFDGVAIAEAV 978
Query: 773 IE-TLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA--MGTEYLDG--QTVPTWKLVDGIC 827
++ + ++G L + TH + L + N K M E DG + V +++ +G
Sbjct: 979 LDYVIRDVGALTLFITHYQHLARLQDRF-NGELKNVHMSFEERDGGKEVVFLYEVAEGTS 1037
Query: 828 RESLAFETAKREGVPETIIQRAE----DLYIACGVNCVMIAAR 866
S A+ VPE +I+ AE +L + G++ V AR
Sbjct: 1038 HRSYGLNVARLAKVPEKVIETAEVKSSELEESMGISRVANMAR 1080
>gi|345886093|ref|ZP_08837367.1| hypothetical protein HMPREF0178_00141, partial [Bilophila sp.
4_1_30]
gi|345040838|gb|EGW45062.1| hypothetical protein HMPREF0178_00141 [Bilophila sp. 4_1_30]
Length = 504
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 145/305 (47%), Gaps = 19/305 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKA---KVLELLRGLSSELQTKINILVFASMLLVIGKAL 615
E F+T++++E E+ A + K+ K+ + LRG +E + +I L A ML +
Sbjct: 128 ERFTTVRLKELEEKLLSAADRRKSLEYKLFQQLRGALAEARPRI--LFMADMLAQLD--Y 183
Query: 616 FAHVSE-GRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSL 670
+ ++E R W P L G + G P E + V N + M + L
Sbjct: 184 WQSLAETAVRHNWSRPVLHT----GQSITIREGRHPIVEGIIGEAAFVPNDLHMDEDRRL 239
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS++LR LL G VPA A + D I + + D+ A G+S+
Sbjct: 240 LLITGPNMAGKSTVLRQTALICLLAQMGSFVPAREAQLGLCDRIFSRVGASDNLAQGQST 299
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI---VST 787
F VEM E I+ T RSLV++DEI RGT T G +A ++ E L I +T
Sbjct: 300 FMVEMMETARILRQATKRSLVILDEIGRGTSTFDGLALAWAVAEELARRAGGSIRTLFAT 359
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L KI + +G+ V +L+ G S E A+ GVP+ ++Q
Sbjct: 360 HYHELTALEGKIPGVHTMNIAIREWNGEIVFLRRLIPGPSDRSYGIEVARLAGVPQPVVQ 419
Query: 848 RAEDL 852
RA ++
Sbjct: 420 RAREI 424
>gi|309799624|ref|ZP_07693848.1| DNA mismatch repair protein MutS [Streptococcus infantis SK1302]
gi|308116746|gb|EFO54198.1| DNA mismatch repair protein MutS [Streptococcus infantis SK1302]
Length = 329
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 4/192 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + +++ G VPAE A +P FDAI +
Sbjct: 72 NSIQMGEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQIGSYVPAERAHLPIFDAIFTRIG 131
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + + T +SL+L DE+ RGT T G +A +IIE + ++
Sbjct: 132 AADDLVSGQSTFMVEMMEANNAIAHATEKSLILFDELGRGTATYDGMALAQAIIEYIHEH 191
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + SL +K+ + T +GQ K+ G +S AK
Sbjct: 192 VGAKTLFATHYHELTSLEASLKHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 251
Query: 839 EGVPETIIQRAE 850
G+P +++RA+
Sbjct: 252 AGLPADLLKRAD 263
>gi|398830550|ref|ZP_10588736.1| DNA mismatch repair protein MutS [Phyllobacterium sp. YR531]
gi|398213987|gb|EJN00571.1| DNA mismatch repair protein MutS [Phyllobacterium sp. YR531]
Length = 907
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 100/185 (54%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+++LLTGPN GGKS+ LR ++L G VPA SA I D + + + D A G+
Sbjct: 651 AIWLLTGPNMGGKSTFLRQNALIAILAQMGSFVPAGSAHIGIVDRLFSRVGASDDLARGR 710
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E +I+ T SLV++DEI RGT T G IA + +E L + C I +T
Sbjct: 711 STFMVEMVETAAILNQATDHSLVILDEIGRGTATFDGLSIAWAAVEYLHEKNQCRAIFAT 770
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + SL K+ + M + DG+ V ++ G S + A+ G+PE ++
Sbjct: 771 HFHEMTSLSEKLTRLSNVTMRVKEWDGEVVFLHEVAKGAADRSYGVQVARLAGLPEAVVN 830
Query: 848 RAEDL 852
RA D+
Sbjct: 831 RARDV 835
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 36 NGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPE 93
+ S++ + + ++ K+ P +L R+GDFYE DA G L G E
Sbjct: 17 DQSVRPTPMMEQYIEIKATNPDSLLFYRMGDFYELFFNDAVEASRALGITLTKRGKHLGE 76
Query: 94 SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
IP G PV L L G+ V + E+V+ P +AR R S+ +
Sbjct: 77 DIPMCGVPVHAADDYLQKLIARGFRVAVCEQVEDPAEARKRGSKSV 122
>gi|309803573|ref|ZP_07697665.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV
11V1-d]
gi|308164321|gb|EFO66576.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV
11V1-d]
Length = 854
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|256844992|ref|ZP_05550450.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_36A2]
gi|256718551|gb|EEU32106.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_36A2]
Length = 896
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 153/298 (51%), Gaps = 31/298 (10%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 529 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 585
Query: 621 EGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLT 674
+ +V P + D +E+ G + L P G+ V N + D +L +LT
Sbjct: 586 --TKNSYVKPEIDDGDILEIKGGRHPIVETLIP------SGTYVKNDIVLDDKNNLIILT 637
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ ++ + ++ G V A+ A +P D I + + D G+S+F +E
Sbjct: 638 GPNMSGKSTYMKQVALNIIMAHIGSYVAADYAKVPIVDKIFTRVGASDDLLTGQSTFMLE 697
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF 793
M+E+ SI+ + T +S +++DEI RGT T G IA +I E + N IG I +TH H +
Sbjct: 698 MTEVASILNSATKKSFIVLDEIGRGTSTYDGISIATAITEYIHNVIGAKTIFATHYHELT 757
Query: 794 SLPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 758 ELEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 813
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN--PFGGLRPESIPKAGCPVVNLRQ 107
+ K + E+L+ R+GDFYE DA I + GL + + +P AG P ++
Sbjct: 32 KIKKDYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 91
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYS+ I ++V+ P A R ++ PG+
Sbjct: 92 YIAKLVEKGYSIAICDQVEDPKSATGIVKREVTRVITPGT 131
>gi|448411932|ref|ZP_21576288.1| DNA mismatch repair protein MutS [Halosimplex carlsbadense 2-9-1]
gi|445669866|gb|ELZ22474.1| DNA mismatch repair protein MutS [Halosimplex carlsbadense 2-9-1]
Length = 926
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 1/195 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D ++TGPN GKS+ +R + S+L G VPA A +P D + + + D A
Sbjct: 663 DEHFFAVVTGPNMSGKSTYMRQVALTSVLAQAGSFVPAAEARLPVVDRVFTRVGASDDIA 722
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM+E+ I+T T SLVL+DE+ RGT TA G IA ++ E + D +G +
Sbjct: 723 GGRSTFMVEMTELADILTNATEDSLVLLDEVGRGTSTADGLAIARAVTEHVHDEVGATTL 782
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + ++ + TE DG+ ++ G S E AK GVP
Sbjct: 783 FATHHHELTAIADDLSGVFNLHFETERTDGEVAFEHEVAPGAAAASYGIEVAKLAGVPAE 842
Query: 845 IIQRAEDLYIACGVN 859
++ R+ +L G +
Sbjct: 843 VVDRSRELLGESGSD 857
>gi|395768016|ref|ZP_10448542.1| DNA mismatch repair protein mutS [Bartonella doshiae NCTC 12862]
gi|395413270|gb|EJF79748.1| DNA mismatch repair protein mutS [Bartonella doshiae NCTC 12862]
Length = 909
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 144/302 (47%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI--GKALFAH 618
F+T ++ + R A A LE+ L++E+ +++ + A+ L + AH
Sbjct: 539 FTTTELADLESRIAHAANHAMTLELEIFDTLTNEITEQVDFIRKAAEALAVLDVSVALAH 598
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R + +L G + L+ P+ + + S N ++
Sbjct: 599 LAEEQGYCRPTIDNSLTFHITAGRHPVVEQALRKQAAEPFVANDCDLSVQENH-QYAPIW 657
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 658 LLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGVVDRLFSRVGASDDLARGRSTF 717
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ +S SLV++DEI RGT T G IA + +E L + C I++TH H
Sbjct: 718 MMEMVETATILNHASSHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNHCRAILATHFH 777
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L K+ M + DG V ++ G S + AK G+P+ +I RA
Sbjct: 778 EMTALTEKLDRLHNVTMKVKNWDGDVVFLHEIAPGAADRSYGVQVAKLAGLPKEVITRAT 837
Query: 851 DL 852
D+
Sbjct: 838 DV 839
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G + IP G PV
Sbjct: 31 QYIEIKAIHSDSLLFYRMGDFYELFFNDAIEASQALGITLTARGKHLGKDIPMCGVPVHA 90
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+ + P +A+ R S+ +
Sbjct: 91 ADDYLQKLIACGYRVAVCEQTEDPAEAKKRGSKSV 125
>gi|335030594|ref|ZP_08524082.1| DNA mismatch repair protein MutS [Streptococcus infantis SK1076]
gi|334265885|gb|EGL84376.1| DNA mismatch repair protein MutS [Streptococcus infantis SK1076]
Length = 843
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 4/192 (2%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
N++ M S+ L+TGPN GKS+ +R + ++ G VPAESA +P FDAI +
Sbjct: 587 NSIQMDEDASIQLITGPNMSGKSTYMRQLAITVIMAQMGSYVPAESARLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATEDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLEASLEHLVNVHVATLEQNGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAE 850
G+P ++ RA+
Sbjct: 767 AGLPADLLARAD 778
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLVERGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|395242006|ref|ZP_10419006.1| DNA mismatch repair protein mutS [Lactobacillus pasteurii CRBIP
24.76]
gi|394480754|emb|CCI85246.1| DNA mismatch repair protein mutS [Lactobacillus pasteurii CRBIP
24.76]
Length = 867
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTV---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + D ++L+TGPN GKS+ +R ++ G VPA+ AS+P FD +
Sbjct: 588 GSYIPNNLVMDDETDVYLITGPNMSGKSTYMRQFALIVIMAQIGCFVPADQASLPIFDQV 647
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T SL+L DEI RGT T G +AG+I++
Sbjct: 648 FTRIGAADDLISGQSTFMVEMSEANDALQHATDHSLILFDEIGRGTATYDGMALAGAIVK 707
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 708 YLHDKVGAKTLFATHYHELTGLEHSLAHLKNIHVGASEENGKLIFLHKILPGAADQSYGI 767
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A L
Sbjct: 768 HVAKLAGLPSAVLREANKL 786
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P +
Sbjct: 15 EIKQQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKSENPIPMAGVPHHAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPRKAQGMVKRGIVQLVTPGT 114
>gi|349612127|ref|ZP_08891354.1| DNA mismatch repair protein mutS [Lactobacillus sp. 7_1_47FAA]
gi|348609143|gb|EGY59104.1| DNA mismatch repair protein mutS [Lactobacillus sp. 7_1_47FAA]
Length = 854
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQMGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|150009585|ref|YP_001304328.1| DNA mismatch repair protein MutS [Parabacteroides distasonis ATCC
8503]
gi|189083164|sp|A6LG92.1|MUTS_PARD8 RecName: Full=DNA mismatch repair protein MutS
gi|149938009|gb|ABR44706.1| putative DNA mismatch repair protein MutS [Parabacteroides
distasonis ATCC 8503]
Length = 870
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 143/304 (47%), Gaps = 25/304 (8%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSEL-----------QTKINILVFASMLLVIGKA 614
+ E L+ Y E A+ K+L L L +EL Q N++ LL KA
Sbjct: 501 ITEELKEYEEKILGAEEKILALETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKA 560
Query: 615 LFAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
A+ K++ P + D I++ G + P + + V+ + Q +
Sbjct: 561 AEAN-------KYIRPVVSDSDKIDIKGGRHPVIEKQLPLG-EPYIANDVYLDDEKQQII 612
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+LLR +L+ G VPAESA I D I + + D+ + G+S+F
Sbjct: 613 IITGPNMAGKSALLRQTALITLMAQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTF 672
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTH 788
VEM+E I+ TSRSLVL DE+ RGT T G IA +I+E + N + +TH
Sbjct: 673 MVEMNEASDILNNMTSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATH 732
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + + K + + + + + KL+ G S AK G+P++I++R
Sbjct: 733 YHELNEMERAFKRIKNYNVSVKEVGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKR 792
Query: 849 AEDL 852
+ ++
Sbjct: 793 SNEI 796
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL------NPFGGLRPES 94
E L + K+K P +LL RVGDFYE G DA I E G+ N G +
Sbjct: 6 ETPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVG----QH 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
+ AG P L L L R G V I ++++ P + R I+ PG
Sbjct: 62 VEMAGFPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG 113
>gi|15235223|ref|NP_192116.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana]
gi|6226648|sp|O04716.2|MSH6_ARATH RecName: Full=DNA mismatch repair protein MSH6; Short=AtMSH6;
AltName: Full=MutS protein homolog 6
gi|3912921|gb|AAC78699.1| G/T DNA mismatch repair enzyme [Arabidopsis thaliana]
gi|5763966|emb|CAB53337.1| mismatch repair protein msh6-1 [Arabidopsis thaliana]
gi|7268591|emb|CAB80700.1| G/T DNA mismatch repair enzyme [Arabidopsis thaliana]
gi|332656719|gb|AEE82119.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana]
Length = 1324
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 147/316 (46%), Gaps = 20/316 (6%)
Query: 551 SKGRKVGEEWFSTLK-VEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLL 609
S + V W T+K + + L + A + + L G E Q K LV A+ L
Sbjct: 951 SSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAEL 1010
Query: 610 --VIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA---AEGSAVHNT 664
+I A + EG R + P + DG L GL GS V N
Sbjct: 1011 DVLISLAFASDSYEGVRCR---PVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNN 1067
Query: 665 VDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V + S LLTGPN GGKS+LLR +C A +L G VPAE+ + D I + M
Sbjct: 1068 VKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMG 1127
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDN 778
+ D G+S+F E+SE ++T+ T SLV++DE+ RGT T+ G IA S++E ++
Sbjct: 1128 AKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEK 1187
Query: 779 IGCLGIVSTHLHGI---FSLPLKIKNAAYKAMGTEYLDG--QTVPTWKLVDGICRESLAF 833
+ C G STH H + + K+ E + G + ++L G C +S
Sbjct: 1188 VQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGV 1247
Query: 834 ETAKREGVPETIIQRA 849
A+ G+P+ ++QRA
Sbjct: 1248 NVARLAGLPDYVLQRA 1263
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 46 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 105
WE FK+K +V+ ++G FYE +DA + + + G +P G P N
Sbjct: 387 WE---FKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPH----CGFPEKNF 439
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
++ L R GY V +VE+ + P Q R+
Sbjct: 440 SVNIEKLVRKGYRVLVVEQTETPDQLEQRR 469
>gi|325911928|ref|ZP_08174331.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 143-D]
gi|325476230|gb|EGC79393.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 143-D]
Length = 854
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|190359894|sp|Q0UXL8.3|MSH3_PHANO RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS
protein homolog 3
Length = 1119
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 10/223 (4%)
Query: 653 FDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 712
DA + VH + D L+TGPN GGKSS +RS +++G G VPAESA + D
Sbjct: 874 LDAYVPNDVHLSGDATRALLVTGPNMGGKSSYVRSAALIAIMGQIGSYVPAESAKLGMLD 933
Query: 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772
A+ M + D+ G+S+F VE++E I+ + TSRSL+++DE+ RGT T G IA ++
Sbjct: 934 AVFTRMGALDNMLKGESTFMVELNETADILRSATSRSLIILDELGRGTSTFDGVAIAEAV 993
Query: 773 IE-TLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA--MGTEYLDG--QTVPTWKLVDGIC 827
++ + ++G L + TH + L + N K M E DG + V +++ +G
Sbjct: 994 LDYVIRDVGALTLFITHYQHLARLQDRF-NGELKNVHMSFEERDGGKEVVFLYEVAEGTS 1052
Query: 828 RESLAFETAKREGVPETIIQRAE----DLYIACGVNCVMIAAR 866
S A+ VPE +I+ AE +L + G++ V AR
Sbjct: 1053 HRSYGLNVARLAKVPEKVIETAEVKSSELEESMGISRVANMAR 1095
>gi|423558667|ref|ZP_17534969.1| DNA mismatch repair protein mutS [Bacillus cereus MC67]
gi|401191935|gb|EJQ98957.1| DNA mismatch repair protein mutS [Bacillus cereus MC67]
Length = 887
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEENLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQPPPSIIGASCVYVMLRPDK 887
+I RA+++ G ++I R + + V V P K
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRVEVKVQEVAPEPVVVKEEPAK 821
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|312870746|ref|ZP_07730853.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 3008A-a]
gi|329919600|ref|ZP_08276589.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN 1401G]
gi|311093758|gb|EFQ52095.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 3008A-a]
gi|328937405|gb|EGG33827.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN 1401G]
Length = 854
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQMGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|291546135|emb|CBL19243.1| DNA mismatch repair protein MutS [Ruminococcus sp. SR1/5]
Length = 872
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPA+SA+I D I + + D A G+S+F
Sbjct: 611 IITGPNMAGKSTYMRQTALIVLMAQIGSFVPADSANIGVVDRIFTRVGASDDLASGQSTF 670
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI---GCLGIVSTH 788
VEM+E+ +I+ TSRSL+++DEI RGT T G IA ++IE + N G + +TH
Sbjct: 671 MVEMTEVANILRNATSRSLLILDEIGRGTSTFDGLSIAWAVIEHISNTKLCGAKTLFATH 730
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L K+ + + V K+V G +S + AK GVP+++IQR
Sbjct: 731 YHELTELEGKLSGVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDSVIQR 790
Query: 849 AEDL 852
A++L
Sbjct: 791 AKEL 794
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
E ++ K ++ +L R+GDFYE DA + + G GL E P G P
Sbjct: 4 EYVKTKEEYSDCILFYRLGDFYEMFFDDALTASKELEITLTGKDCGLE-ERAPMCGVPFH 62
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+V+ P +A+ R + PG+
Sbjct: 63 AAETYINRLIEKGYKVAICEQVEDPKKAKGLVKREVVRIVTPGT 106
>gi|329956370|ref|ZP_08296967.1| DNA mismatch repair protein MutS [Bacteroides clarus YIT 12056]
gi|328524267|gb|EGF51337.1| DNA mismatch repair protein MutS [Bacteroides clarus YIT 12056]
Length = 862
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 149/319 (46%), Gaps = 26/319 (8%)
Query: 555 KVGEEWF--STL-----KVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASM 607
KV +EW TL + + L+ Y E A+ K+L L L +EL +N + A
Sbjct: 475 KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETQLYTELVQSLNEFISAIQ 534
Query: 608 LLVIGKA----LFAHVSEGRRRKWVFPALKDIELDGANCLKM-NGLSPY---WFDAAEGS 659
+ A L + + R ++ P + D E+ L++ G P E
Sbjct: 535 IDANQIARLDCLLSFATAARENNYIRPVISDDEV-----LEIRQGRHPVIEKQLPIGEKY 589
Query: 660 AVHNTV---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML 716
++ + Q + ++TGPN GKS+LLR +L+ G VPAESA I D I
Sbjct: 590 IANDVMLDSSTQQIIIITGPNMAGKSALLRQTALITLMAQIGSFVPAESAHIGLVDKIFT 649
Query: 717 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776
+ + D+ + G+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 650 RVGASDNISVGESTFMVEMNEAADILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEYI 709
Query: 777 D---NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ +TH H + + K + + +D + + KL G S
Sbjct: 710 HEHPRAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGI 769
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P++I++RA+D+
Sbjct: 770 HVAKMAGMPKSIVKRADDI 788
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+K P V+L R GDFYE DA + E G L + ++I AG P
Sbjct: 4 QFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGI-DHDLDFP 163
L L L R G V I ++++ P + R I+ PG V I D+ L++
Sbjct: 64 LDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG-------VSINDNVLNYR 116
Query: 164 EPMPVIGVSRSAKGYCIISILE 185
E + V KG C ++ L+
Sbjct: 117 ENNFLAAV-HFGKGACGVAFLD 137
>gi|298373977|ref|ZP_06983935.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_19]
gi|298268345|gb|EFI10000.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_19]
Length = 870
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 143/304 (47%), Gaps = 25/304 (8%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSEL-----------QTKINILVFASMLLVIGKA 614
+ E L+ Y E A+ K+L L L +EL Q N++ LL KA
Sbjct: 501 ITEELKEYEEKILGAEEKILALETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKA 560
Query: 615 LFAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
A+ K++ P + D I++ G + P + + V+ + Q +
Sbjct: 561 AEAN-------KYIRPVVSDSDKIDIKGGRHPVIEKQLPLG-EPYIANDVYLDDEKQQII 612
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+LLR +L+ G VPAESA I D I + + D+ + G+S+F
Sbjct: 613 IITGPNMAGKSALLRQTALITLMAQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTF 672
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTH 788
VEM+E I+ TSRSLVL DE+ RGT T G IA +I+E + N + +TH
Sbjct: 673 MVEMNEASDILNNMTSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATH 732
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + + K + + + + + KL+ G S AK G+P++I++R
Sbjct: 733 YHELNEMERAFKRIKNYNVSVKEVGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKR 792
Query: 849 AEDL 852
+ ++
Sbjct: 793 SNEI 796
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL------NPFGGLRPES 94
E L + K+K P +LL RVGDFYE G DA I E G+ N G +
Sbjct: 6 ETPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVG----QH 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLV 154
+ AG P L L L R G V I ++++ P + R I+ PG V
Sbjct: 62 VEMAGFPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG-------V 114
Query: 155 GIDHDLDFPEPMPVIGVSRSAKGYCIISILE 185
I+ ++ + + AK C IS L+
Sbjct: 115 SINDNILNHKENNFLASIHFAKEVCGISFLD 145
>gi|153811376|ref|ZP_01964044.1| hypothetical protein RUMOBE_01768 [Ruminococcus obeum ATCC 29174]
gi|149832503|gb|EDM87587.1| DNA mismatch repair protein MutS [Ruminococcus obeum ATCC 29174]
Length = 872
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 126/258 (48%), Gaps = 23/258 (8%)
Query: 603 VFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGS--- 659
VFAS+ LV R +V P + + +G +K NG P E
Sbjct: 552 VFASLALV-----------AERNNFVRPKINE---NGVLDIK-NGRHPVVEQMIENDMFI 596
Query: 660 AVHNTVDMQS--LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
A +D Q + ++TGPN GKS+ +R L+ G VPAE A+I D I
Sbjct: 597 ANDTYLDNQKKRVSIITGPNMAGKSTYMRQTALIVLMAQIGSFVPAEKANIGIVDRIFTR 656
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
+ + D A G+S+F VEM+E+ +I+ TSRSL+++DEI RGT T G IA S+IE +
Sbjct: 657 VGASDDLASGQSTFMVEMTEVANILRNATSRSLLILDEIGRGTSTFDGLAIAWSVIEHIS 716
Query: 778 NI---GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
N G + +TH H + L KI + + V K+V G +S +
Sbjct: 717 NTKLCGAKTLFATHYHELTELEGKIPGVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQ 776
Query: 835 TAKREGVPETIIQRAEDL 852
AK GVP+++I RA++L
Sbjct: 777 VAKLAGVPDSVINRAKEL 794
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
E + K + +L R+GDFYE DA ++ + L G GL E P G P
Sbjct: 4 EYCKTKENYKDCILFYRLGDFYEMFFDDAILVSKELELTLTGKDCGLE-ERAPMCGIPFH 62
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L G+ V I E+V+ P +A+ R + PG+
Sbjct: 63 AAETYIKRLIEKGHKVAICEQVEDPKKAKGLVKREVIRVVTPGT 106
>gi|403530019|ref|YP_006664548.1| DNA mismatch repair protein MutS [Bartonella quintana RM-11]
gi|403232091|gb|AFR25834.1| DNA mismatch repair protein MutS [Bartonella quintana RM-11]
Length = 911
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 142/306 (46%), Gaps = 19/306 (6%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T ++ E R A A LE+ L E+ +++ + A+ L I A
Sbjct: 540 FTTTELVELEGRIAHAATHAMTLELEIFDTLVHEITEQVDFIRKAAETLAILDVSVALAR 599
Query: 621 EGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSA----VHNTVDMQ------- 668
+++ P ++D + ++ G P A A V N D+
Sbjct: 600 LAEEQEYCRP-----KIDQSLTFRITAGRHPVVEQALRKQAAEPFVANNCDLSVQKNHQY 654
Query: 669 -SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+++LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G
Sbjct: 655 AAIWLLTGPNMGGKSTFLRQNALITIMAQMGSFVPASSAHIGVVDRLFSRVGASDDLARG 714
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVS 786
+S+F +EM E +I+ +S SLV++DEI RGT T G IA + +E L + C I++
Sbjct: 715 RSTFMMEMVETATILNHASSHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNQCRAILA 774
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + +L K+ M + DG V +++ G S + AK G+P +I
Sbjct: 775 THFHEMTALTEKLDRLYNVTMKVKNWDGDVVFLHEVMPGAADRSYGVQVAKLAGLPTAVI 834
Query: 847 QRAEDL 852
RA D+
Sbjct: 835 TRATDV 840
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G + IP G PV
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFNDAIEAAQVLGITLTTRGKHLGKDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+ + P +A+ R S+ I
Sbjct: 92 ADDYLQKLISCGYRVAVCEQTEDPAEAKKRGSKSI 126
>gi|94985637|ref|YP_605001.1| DNA mismatch repair protein MutS [Deinococcus geothermalis DSM
11300]
gi|94555918|gb|ABF45832.1| DNA mismatch repair protein MutS [Deinococcus geothermalis DSM
11300]
Length = 880
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 100/187 (53%), Gaps = 1/187 (0%)
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
LLTGPN GKS+ LR++ +LL G VPA+ A +P +DAI + + D A G+S+
Sbjct: 635 LLLTGPNMAGKSTYLRTVALCALLHQIGAFVPADHAELPIYDAIHTRIGASDDLAGGRST 694
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790
F VEMSE+ +I+ T RSLV++DE+ RGT T G IA + +E L G + +TH
Sbjct: 695 FMVEMSELAAILHGVTHRSLVILDEVGRGTSTLDGLAIAQAALEHLHAAGAHTLFATHYF 754
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTW-KLVDGICRESLAFETAKREGVPETIIQRA 849
+ L + + E +G + + +++ G R+S E A+ G+P + RA
Sbjct: 755 ELTRLEADLPGLVNLHVAAEEDEGSGLTFYHQVIPGAARQSYGVEVARLAGLPAPVTSRA 814
Query: 850 EDLYIAC 856
L A
Sbjct: 815 ARLLTAL 821
>gi|451941398|ref|YP_007462035.1| DNA mismatch repair protein MutS [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900785|gb|AGF75247.1| DNA mismatch repair protein MutS [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 914
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 14/243 (5%)
Query: 611 IGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSL 670
I ++L H++ GR P ++ L+ P+ + + S N ++
Sbjct: 611 IDQSLTFHITAGRH-----PVVE-------QALRKQAAEPFVANNCDLSVQENH-QYAAI 657
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
+LLTGPN GGKS+ LR +++ G VPA +A I D + + + D A G+S+
Sbjct: 658 WLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATAAHIGVVDRLFSRVGASDDLARGRST 717
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHL 789
F +EM E +I+ + SLV++DEI RGT T G IA + +E L + C I++TH
Sbjct: 718 FMMEMVETATILNHASHHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNHCRAILATHF 777
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + +L K+ M + DG V ++ G S + AK G+PE +I RA
Sbjct: 778 HEMTALTQKLDRLHNVTMKVKNWDGDVVFLHEVTKGAADRSYGVQVAKLAGLPEAVITRA 837
Query: 850 EDL 852
D+
Sbjct: 838 TDV 840
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV
Sbjct: 32 QYIEIKAVNNDSLLFYRMGDFYELFFNDAIEAAQALGITLTTRGKHLGEDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 137
L L GY V + E+ + P +A+ R S+
Sbjct: 92 ADDYLQKLIACGYRVAVCEQTEDPAEAKKRGSK 124
>gi|423367756|ref|ZP_17345188.1| DNA mismatch repair protein mutS [Bacillus cereus VD142]
gi|401083409|gb|EJP91667.1| DNA mismatch repair protein mutS [Bacillus cereus VD142]
Length = 890
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEESLGQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|229012953|ref|ZP_04170118.1| DNA mismatch repair protein mutS [Bacillus mycoides DSM 2048]
gi|229061372|ref|ZP_04198718.1| DNA mismatch repair protein mutS [Bacillus cereus AH603]
gi|228717911|gb|EEL69557.1| DNA mismatch repair protein mutS [Bacillus cereus AH603]
gi|228748207|gb|EEL98067.1| DNA mismatch repair protein mutS [Bacillus mycoides DSM 2048]
Length = 884
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|423333984|ref|ZP_17311765.1| DNA mismatch repair protein mutS [Parabacteroides distasonis
CL03T12C09]
gi|409226133|gb|EKN19043.1| DNA mismatch repair protein mutS [Parabacteroides distasonis
CL03T12C09]
Length = 870
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 143/304 (47%), Gaps = 25/304 (8%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSEL-----------QTKINILVFASMLLVIGKA 614
+ E L+ Y E A+ K+L L L +EL Q N++ LL KA
Sbjct: 501 ITEELKEYEEKILGAEEKILALETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKA 560
Query: 615 LFAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
A+ K++ P + D I++ G + P + + V+ + Q +
Sbjct: 561 AEAN-------KYIRPVVSDSDKIDIKGGRHPVIEKQLPLG-EPYIANDVYLDDEKQQII 612
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+LLR +L+ G VPAESA I D I + + D+ + G+S+F
Sbjct: 613 IITGPNMAGKSALLRQTALITLMAQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTF 672
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTH 788
VEM+E I+ TSRSLVL DE+ RGT T G IA +I+E + N + +TH
Sbjct: 673 MVEMNEASDILNNMTSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATH 732
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + + K + + + + + KL+ G S AK G+P++I++R
Sbjct: 733 YHELNEMERAFKRIKNYNVSVKEVGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKR 792
Query: 849 AEDL 852
+ ++
Sbjct: 793 SNEI 796
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL------NPFGGLRPES 94
E L + K+K P +LL RVGDFYE G DA I E G+ N G +
Sbjct: 6 ETPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVG----QH 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLV 154
+ AG P L L L R G V I ++++ P + R I+ PG V
Sbjct: 62 VEMAGFPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG-------V 114
Query: 155 GIDHDLDFPEPMPVIGVSRSAKGYCIISILE 185
I+ ++ + + AK C IS L+
Sbjct: 115 SINDNILNHKENNFLASIHFAKEVCGISFLD 145
>gi|423669345|ref|ZP_17644374.1| DNA mismatch repair protein mutS [Bacillus cereus VDM034]
gi|423674527|ref|ZP_17649466.1| DNA mismatch repair protein mutS [Bacillus cereus VDM062]
gi|401298472|gb|EJS04072.1| DNA mismatch repair protein mutS [Bacillus cereus VDM034]
gi|401310078|gb|EJS15411.1| DNA mismatch repair protein mutS [Bacillus cereus VDM062]
Length = 890
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|194334404|ref|YP_002016264.1| DNA mismatch repair protein MutS [Prosthecochloris aestuarii DSM
271]
gi|194312222|gb|ACF46617.1| DNA mismatch repair protein MutS [Prosthecochloris aestuarii DSM
271]
Length = 875
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKSS LR I SLL G VPA+ A I D I + + D+ A G
Sbjct: 624 QRMLIVTGPNMAGKSSYLRQIGLISLLAQVGSFVPADEAEIGLVDRIFTRVGASDNLASG 683
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVS 786
+S+F VEM+E SI+ T SL+L+DE+ RGT T G IA ++ E + + IG + +
Sbjct: 684 ESTFMVEMNEAASILNNATRSSLILLDEVGRGTSTYDGMSIAWAMSEYIHSAIGARTLFA 743
Query: 787 THLHGIFSLPLKIKNA-AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
TH H + L ++ Y A TE D + V K+V G S E A+ G+P +
Sbjct: 744 THYHELAELEERLDGVFNYNATVTETAD-RVVFLRKIVRGASDNSYGIEVARMAGMPSGV 802
Query: 846 IQRAEDL 852
IQRA+++
Sbjct: 803 IQRAKEI 809
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE----SIPKAGCPV 102
+ L+ K ++P +LL RVGDFYE+ DA + E LN R I AG P
Sbjct: 19 QYLEVKERYPDFLLLFRVGDFYESFYDDARQVSE--ALNIVLTRRSNGAASDIAMAGFPH 76
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHD 159
+ + L R G+ V + ++V+ P++A+ R I+ PG Y ++ H+
Sbjct: 77 HSCEGYIAKLVRKGFKVAVCDQVEDPSEAKGIVRREITDIVTPGVTYSDKILDDRHN 133
>gi|423511802|ref|ZP_17488333.1| DNA mismatch repair protein mutS [Bacillus cereus HuA2-1]
gi|402450063|gb|EJV81897.1| DNA mismatch repair protein mutS [Bacillus cereus HuA2-1]
Length = 890
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|423488892|ref|ZP_17465574.1| DNA mismatch repair protein mutS [Bacillus cereus BtB2-4]
gi|423494617|ref|ZP_17471261.1| DNA mismatch repair protein mutS [Bacillus cereus CER057]
gi|423498592|ref|ZP_17475209.1| DNA mismatch repair protein mutS [Bacillus cereus CER074]
gi|423661391|ref|ZP_17636560.1| DNA mismatch repair protein mutS [Bacillus cereus VDM022]
gi|401151678|gb|EJQ59124.1| DNA mismatch repair protein mutS [Bacillus cereus CER057]
gi|401159250|gb|EJQ66635.1| DNA mismatch repair protein mutS [Bacillus cereus CER074]
gi|401301432|gb|EJS07021.1| DNA mismatch repair protein mutS [Bacillus cereus VDM022]
gi|402433247|gb|EJV65301.1| DNA mismatch repair protein mutS [Bacillus cereus BtB2-4]
Length = 890
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|319405010|emb|CBI78619.1| DNA mismatch repair protein MutS [Bartonella sp. AR 15-3]
Length = 911
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKA--LFAH 618
F+T ++ E R A A LE+ L E+ +I+ + AS L I AH
Sbjct: 540 FTTAELAELESRIAHAANHALTLELEIFDELVDEITEQIDFIRQASEALAILDVSIALAH 599
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R + +L G + L+ P+ + SA + ++ ++
Sbjct: 600 LAEEQGYCRPKIDNSLAFHITAGRHPVVEQALRKQVAEPFIANNCNLSAQNRDLNA-DIW 658
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 659 LLTGPNMGGKSTFLRQNALIAIMAQMGSFVPAASAHIGIVDRLFSRVGASDDLARGRSTF 718
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ +S SLV++DEI RGT T G IA + +E L I C I++TH H
Sbjct: 719 MMEMVETATILNHASSHSLVILDEIGRGTSTFDGLSIAWATVEHLHEINRCRAILATHFH 778
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L K+ M + + + ++ G S + AK G+P T+I RA
Sbjct: 779 EMTALTKKLNRLHNVTMKVKNWNNDVIFLHEITKGTADRSYGVQVAKLAGLPATVISRAT 838
Query: 851 DL 852
D+
Sbjct: 839 DV 840
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G + IP G PV +
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFNDATEAAQALGITLTTRGKHLGKDIPMCGVPVHS 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+++ P +A+ R S+ +
Sbjct: 92 ADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSV 126
>gi|163941457|ref|YP_001646341.1| DNA mismatch repair protein MutS [Bacillus weihenstephanensis
KBAB4]
gi|229486459|sp|A9VS13.1|MUTS_BACWK RecName: Full=DNA mismatch repair protein MutS
gi|163863654|gb|ABY44713.1| DNA mismatch repair protein MutS [Bacillus weihenstephanensis
KBAB4]
Length = 890
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|159184268|ref|NP_353377.2| DNA mismatch repair protein, MutS family [Agrobacterium fabrum str.
C58]
gi|159139595|gb|AAK86162.2| DNA mismatch repair protein, MutS family [Agrobacterium fabrum str.
C58]
Length = 883
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 112/213 (52%), Gaps = 2/213 (0%)
Query: 641 NCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLM 700
L+ P+ + + SAV N +++LLTGPN GGKS+ LR ++L G
Sbjct: 601 QALRRQSAGPFIANNCDLSAV-NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSF 659
Query: 701 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT 760
VPAE+A I D + + + D A G+S+F VEM E +I+ T RSLV++DEI RGT
Sbjct: 660 VPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGT 719
Query: 761 ETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 819
T G IA + +E L + C G+ +TH H + L K+ + M + +G +
Sbjct: 720 ATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGDVIFL 779
Query: 820 WKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
++ G S + A+ G+P ++++RA ++
Sbjct: 780 HEVGPGAADRSYGIQVARLAGLPASVVERAREV 812
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G IP G PV
Sbjct: 4 QYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVPVHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+++ P +A+ R S+ +
Sbjct: 64 ADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSV 98
>gi|423598919|ref|ZP_17574919.1| DNA mismatch repair protein mutS [Bacillus cereus VD078]
gi|401237189|gb|EJR43646.1| DNA mismatch repair protein mutS [Bacillus cereus VD078]
Length = 890
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|336252228|ref|YP_004595335.1| DNA mismatch repair protein mutS [Halopiger xanaduensis SH-6]
gi|335336217|gb|AEH35456.1| DNA mismatch repair protein mutS [Halopiger xanaduensis SH-6]
Length = 930
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
H T D + L ++TGPN GKS+ +R + LL G VPA SA + D I + +
Sbjct: 655 AHFTGD-RRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVPAGSARLTPVDRIFTRVGA 713
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNI 779
D A G+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +
Sbjct: 714 SDDIAGGRSTFMVEMDELATILREADERSLVLLDEVGRGTSTADGMAIAQAITEHLHDEV 773
Query: 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
G + +TH H + L ++ A + DG+ V ++ G S E A
Sbjct: 774 GATTLFATHHHPLTELADDLEGAFTLHFEVDQEDGEVVFHHEIAPGAATGSYGVEVATAA 833
Query: 840 GVPETIIQRAEDL 852
GVPE +++R+ +L
Sbjct: 834 GVPEDVVERSREL 846
>gi|331091141|ref|ZP_08339983.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405363|gb|EGG84899.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
2_1_46FAA]
Length = 883
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPAESA++ D I + + D A G+S+F
Sbjct: 617 IITGPNMAGKSTYMRQTALIVLMAQIGTFVPAESANVGIVDRIFTRVGASDDLASGQSTF 676
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTH 788
VEM+E+ +I+ T+RSL+++DEI RGT T G IA +++E + N LG + +TH
Sbjct: 677 MVEMTEVANILRNATNRSLLILDEIGRGTSTFDGLSIAWAVVEHISNAKLLGAKTLFATH 736
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L KI + + + V K+V G +S + AK GVPE++I R
Sbjct: 737 YHELTELEGKIDSVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPESVILR 796
Query: 849 AEDL 852
A+++
Sbjct: 797 AKEI 800
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ ++ K ++ +L R+GDFYE DA + L G G+ E P G P
Sbjct: 10 QYVEMKKQYQDCILFYRLGDFYEMFFDDAVTASQELELTLTGKNCGME-ERAPMCGVPYH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L L GY V I E+V+ P A+ R + PG+
Sbjct: 69 AVEGYLTRLVSKGYKVAICEQVEDPKVAKGIVKREVVRIVTPGT 112
>gi|414564975|ref|YP_006043936.1| DNA mismatch repair protein MutS [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338848040|gb|AEJ26252.1| DNA mismatch repair protein MutS [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 837
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 96/183 (52%), Gaps = 1/183 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + ++ G V AESAS+P FDAI + + D G+
Sbjct: 587 SIQLITGPNMSGKSTYMRQLALTVIMAQIGSFVAAESASLPLFDAIFTRIGAADDLISGQ 646
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + T SL+L DE+ RGT T G +A SIIE + D +G + +T
Sbjct: 647 STFMVEMMEANHAIKRATPHSLILFDELGRGTATYDGMALAQSIIEYIHDRVGSKTMFAT 706
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ + T DG K+ +G +S A+ G+PE ++
Sbjct: 707 HYHELTGLSTKLTRLVNVHVATLEKDGNVTFLHKIAEGPADKSYGIHVARIAGLPEDLLA 766
Query: 848 RAE 850
RA+
Sbjct: 767 RAD 769
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + GL IP AG P +
Sbjct: 3 QYLDIKKNYPDAFLLFRMGDFYELFYEDAVKAAQILEIGLTSRNKNADNPIPMAGVPYHS 62
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI---------SGHAHPGSPYVFGLVG 155
++Q +D L G+ V I E+++ P QA R + + P SP F LV
Sbjct: 63 VQQYIDVLIDLGHKVAIAEQMEDPKQAVGVVKREVVQVITPGTAVDSSRPDSPNNF-LVA 121
Query: 156 IDHD 159
+D D
Sbjct: 122 VDFD 125
>gi|423522400|ref|ZP_17498873.1| DNA mismatch repair protein mutS [Bacillus cereus HuA4-10]
gi|401175094|gb|EJQ82297.1| DNA mismatch repair protein mutS [Bacillus cereus HuA4-10]
Length = 899
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEENLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQPPPSIIGASCVYVMLRPDK 887
+I RA+++ G ++I R + + V V P K
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRVEVKVQEVAPEPVVVKEEPAK 821
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|229168509|ref|ZP_04296232.1| DNA mismatch repair protein mutS [Bacillus cereus AH621]
gi|228614915|gb|EEK72017.1| DNA mismatch repair protein mutS [Bacillus cereus AH621]
Length = 884
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|423592288|ref|ZP_17568319.1| DNA mismatch repair protein mutS [Bacillus cereus VD048]
gi|401230530|gb|EJR37037.1| DNA mismatch repair protein mutS [Bacillus cereus VD048]
Length = 890
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|387926949|ref|ZP_10129628.1| DNA mismatch repair protein MutS [Bacillus methanolicus PB1]
gi|387589093|gb|EIJ81413.1| DNA mismatch repair protein MutS [Bacillus methanolicus PB1]
Length = 870
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 9/190 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R I ++L G VPA A +P FD + + + D G
Sbjct: 600 REILLITGPNMSGKSTYMRQIALTAILAQIGCFVPASEAVLPIFDQVFTRIGAADDLISG 659
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVS 786
+S+F VEM E ++ +T T SL+L DEI RGT T G +A +IIE + N IG + S
Sbjct: 660 QSTFMVEMLEAKNAITNATQDSLILFDEIGRGTSTYDGMALAQAIIEYIHNRIGAKTLFS 719
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + LP K+KN A+ +G+ V K+ +G +S A+ +P
Sbjct: 720 THYHELTVLEEELP-KVKNVHVSAVEQ---NGKVVFLHKIKEGAADKSYGIHVAQLAELP 775
Query: 843 ETIIQRAEDL 852
E +I RA ++
Sbjct: 776 EELINRANEI 785
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K+ + L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLLIKADYQDAFLFFRLGDFYEMFFDDAIKASQELEITLTSRDGGGDERIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+ + P QA+ R + PG+
Sbjct: 70 AASYIEQLIEKGYKVAICEQTEDPKQAKGVVKREVVQLITPGT 112
>gi|422340364|ref|ZP_16421315.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355369357|gb|EHG16753.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 877
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 31/298 (10%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 510 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 566
Query: 621 EGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLT 674
+ +V P + + +E+ G + L P G+ V N + D +L +LT
Sbjct: 567 --TKNSYVKPEMNEGEILEIKGGRHPIVETLIP------SGTYVKNDIILDDKNNLIILT 618
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +E
Sbjct: 619 GPNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLE 678
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF 793
M+E+ SI+ + T +S V++DEI RGT T G IA +I E + N IG I +TH H +
Sbjct: 679 MTEVASILNSATKKSFVVLDEIGRGTSTYDGISIATAITEYIHNIIGAKTIFATHYHELT 738
Query: 794 SLPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 739 ELEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 794
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP--ESIPKAGCPVVNLRQ 107
+ K ++ E+L+ R+GDFYE DA + GL R + +P AG P ++
Sbjct: 13 KIKEEYKNEILMFRLGDFYEMFFEDAKTASKELGLTLTKRNREKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYS+ I ++V+ P A R ++ PG+
Sbjct: 73 YIAKLVEKGYSIAICDQVEDPKSATGIVKREVTRVITPGT 112
>gi|259501313|ref|ZP_05744215.1| DNA mismatch repair protein HexA [Lactobacillus iners DSM 13335]
gi|302190963|ref|ZP_07267217.1| DNA mismatch repair protein MutS [Lactobacillus iners AB-1]
gi|259167283|gb|EEW51778.1| DNA mismatch repair protein HexA [Lactobacillus iners DSM 13335]
Length = 854
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQMGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G +S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHFKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|148259924|ref|YP_001234051.1| DNA mismatch repair protein MutS [Acidiphilium cryptum JF-5]
gi|146401605|gb|ABQ30132.1| DNA mismatch repair protein MutS [Acidiphilium cryptum JF-5]
Length = 882
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 101/200 (50%), Gaps = 4/200 (2%)
Query: 661 VHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
+ N D+ + L LLTGPN GKS+ LR +L GL VPAE A I D +
Sbjct: 611 IANDADLSPERRLMLLTGPNMAGKSTFLRQNALVIILAQAGLPVPAEQARIGLVDRLFSR 670
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL- 776
+ + D A G+S+F VEM E SI+ RS V+IDEI RGT T G IA +++E L
Sbjct: 671 VGAADDLAAGRSTFMVEMIETASILNQAGPRSFVIIDEIGRGTGTQDGLAIAQAVLEALH 730
Query: 777 DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
+I C I +TH H + L + M + G V ++++G S A
Sbjct: 731 GSIRCRSIFATHFHDLVQLGAALPRLRPCTMRVKSWRGSVVFLHEVIEGAAERSWGVHVA 790
Query: 837 KREGVPETIIQRAEDLYIAC 856
K G+PE +I+RAE L A
Sbjct: 791 KLAGLPEPVIRRAEALLRAA 810
Score = 46.6 bits (109), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ Q K+ +P ++ R+GDFYE DA ++ A L G + E I G PV
Sbjct: 15 QWFQAKADYPDALIFFRMGDFYELFFEDAEAASAALDIA-LTARGTHQGEPIAMCGVPVS 73
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L R G+ V + E+V+ P A++R + +
Sbjct: 74 QRDTYLTRLIRRGFRVAVAEQVEAPEAAKARGGKAL 109
>gi|450064170|ref|ZP_21845291.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML5]
gi|449203955|gb|EMC04786.1| DNA mismatch repair protein MutS [Streptococcus mutans NLML5]
Length = 849
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 11/218 (5%)
Query: 663 NTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT++ S+ L+TGPN GKS+ +R + ++ G V A+SA +P FDAI +
Sbjct: 587 NTINFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQLGSFVAADSADLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778
+ D G+S+F VEM E + A T SL+L DE+ RGT T G +A +IIE + N
Sbjct: 647 AADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTATYDGMALAQAIIEYIHNK 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
+G + +TH H + L + + + T DG+ K+ DG +S AK
Sbjct: 707 VGAKTLFATHYHELTDLSTILTSLVNVHVATLEKDGEVTFLHKIADGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYI-------ACGVNCVMIAAREQP 869
G+P+ ++ RA+ + + A VN QP
Sbjct: 767 AGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQP 804
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE I A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P +A R + PG+
Sbjct: 71 SAQQYIDVLIDLGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|387593192|gb|EIJ88216.1| DNA mismatch repair protein MutS [Nematocida parisii ERTm3]
gi|387596095|gb|EIJ93717.1| DNA mismatch repair protein MutS [Nematocida parisii ERTm1]
Length = 717
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 4/179 (2%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GGK++ L+++ S+L G VPA A IP F + + + + D+P G S+F
Sbjct: 535 VITGPNMGGKTTFLKTVGVISILAQIGSYVPAVYAHIPIFHQLFIRIGASDNPDKGISTF 594
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791
EM ++ +I+ T +SLV+IDE+ RGT G IA S +E + + + + +TH H
Sbjct: 595 MAEMMDVSTILNQATEKSLVIIDELGRGTSDEDGYAIAASTVEYISRLKAMTLFATHFHE 654
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +P I K +G+ + + T+K+ DG + S TA+R G P+ ++ AE
Sbjct: 655 LAHMPGIIN----KRVGSVEEENGLIMTYKIEDGFAKSSHGINTARRMGFPDEVLLMAE 709
>gi|229134577|ref|ZP_04263387.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST196]
gi|228648838|gb|EEL04863.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST196]
Length = 884
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|300769726|ref|ZP_07079609.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308181084|ref|YP_003925212.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|418275815|ref|ZP_12891138.1| DNA mismatch repair protein MutS/HexA [Lactobacillus plantarum
subsp. plantarum NC8]
gi|448821800|ref|YP_007414962.1| DNA mismatch repair protein MutS [Lactobacillus plantarum ZJ316]
gi|300492769|gb|EFK27954.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308046575|gb|ADN99118.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|376009366|gb|EHS82695.1| DNA mismatch repair protein MutS/HexA [Lactobacillus plantarum
subsp. plantarum NC8]
gi|448275297|gb|AGE39816.1| DNA mismatch repair protein MutS [Lactobacillus plantarum ZJ316]
Length = 896
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 104/195 (53%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N V M +++ L+TGPN GKS+ +R + ++ G VPA+SA +P FD I
Sbjct: 588 SYVPNNVTMSPDETVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIF 647
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + + T+ SLVL DEI RGT T G +A +IIE
Sbjct: 648 TRIGATDDLISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEF 707
Query: 776 LDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N I + STH H + +L ++ +G DG+ V K+ G +S
Sbjct: 708 VHNHIHAKTLFSTHYHELTALDQELSGLRNVHVGATEQDGELVFLHKVEPGAADKSYGVH 767
Query: 835 TAKREGVPETIIQRA 849
AK G+P ++++RA
Sbjct: 768 VAKLAGMPTSLLERA 782
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIP 96
K+ + + K+++P L R+GDFYE DA L+E L IP
Sbjct: 6 KDTPMMRQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELT-LTTRNHSAENPIP 64
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P ++ +D L GY V I E+++ P A+ R + PG+
Sbjct: 65 MCGVPHRAVQNYIDILVDKGYKVAICEQMEDPKLAKGMVKREVIQLVTPGT 115
>gi|49473773|ref|YP_031815.1| DNA mismatch repair protein MutS [Bartonella quintana str.
Toulouse]
gi|81696081|sp|Q6G0X1.1|MUTS_BARQU RecName: Full=DNA mismatch repair protein MutS
gi|49239276|emb|CAF25599.1| DNA mismatch repair protein mutS [Bartonella quintana str.
Toulouse]
Length = 911
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 142/306 (46%), Gaps = 19/306 (6%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T ++ E R A A LE+ L E+ +++ + A+ L I A
Sbjct: 540 FTTTELVELEGRIAHAATHAMTLELEIFDTLVHEITEQVDFIRKAAEALAILDVSVALAR 599
Query: 621 EGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSA----VHNTVDMQ------- 668
+++ P ++D + ++ G P A A V N D+
Sbjct: 600 LAEEQEYCRP-----KIDQSLTFRITAGRHPVVEQALRKQAAEPFVANNCDLSVQKNHQY 654
Query: 669 -SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+++LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G
Sbjct: 655 AAIWLLTGPNMGGKSTFLRQNALITIMAQMGSFVPASSAHIGVVDRLFSRVGASDDLARG 714
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVS 786
+S+F +EM E +I+ +S SLV++DEI RGT T G IA + +E L + C I++
Sbjct: 715 RSTFMMEMVETATILNHASSHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNQCRAILA 774
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + +L K+ M + DG V +++ G S + AK G+P +I
Sbjct: 775 THFHEMTALTEKLDRLYNVTMKVKNWDGDVVFLHEVMPGAADRSYGVQVAKLAGLPTAVI 834
Query: 847 QRAEDL 852
RA D+
Sbjct: 835 TRATDV 840
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV
Sbjct: 32 QYIEIKAVNSDSLLFYRMGDFYELFFNDAIEAAQVLGITLTTRGKHLGEDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L +GY V + E+ + P +A+ R S+ I
Sbjct: 92 ADDYLQKLISSGYRVAVCEQTEDPAEAKKRGSKSI 126
>gi|334186287|ref|NP_001190656.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana]
gi|332656720|gb|AEE82120.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana]
Length = 1321
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 147/316 (46%), Gaps = 20/316 (6%)
Query: 551 SKGRKVGEEWFSTLK-VEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLL 609
S + V W T+K + + L + A + + L G E Q K LV A+ L
Sbjct: 948 SSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAEL 1007
Query: 610 --VIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA---AEGSAVHNT 664
+I A + EG R + P + DG L GL GS V N
Sbjct: 1008 DVLISLAFASDSYEGVRCR---PVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNN 1064
Query: 665 VDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V + S LLTGPN GGKS+LLR +C A +L G VPAE+ + D I + M
Sbjct: 1065 VKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMG 1124
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDN 778
+ D G+S+F E+SE ++T+ T SLV++DE+ RGT T+ G IA S++E ++
Sbjct: 1125 AKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEK 1184
Query: 779 IGCLGIVSTHLHGI---FSLPLKIKNAAYKAMGTEYLDG--QTVPTWKLVDGICRESLAF 833
+ C G STH H + + K+ E + G + ++L G C +S
Sbjct: 1185 VQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGV 1244
Query: 834 ETAKREGVPETIIQRA 849
A+ G+P+ ++QRA
Sbjct: 1245 NVARLAGLPDYVLQRA 1260
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 46 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 105
WE FK+K +V+ ++G FYE +DA + + + G +P G P N
Sbjct: 384 WE---FKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPH----CGFPEKNF 436
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
++ L R GY V +VE+ + P Q R+
Sbjct: 437 SVNIEKLVRKGYRVLVVEQTETPDQLEQRR 466
>gi|380033021|ref|YP_004890012.1| DNA mismatch repair protein MutS/HexA [Lactobacillus plantarum
WCFS1]
gi|38258029|sp|Q88UZ7.1|MUTS_LACPL RecName: Full=DNA mismatch repair protein MutS
gi|342242264|emb|CCC79498.1| DNA mismatch repair protein MutS/HexA [Lactobacillus plantarum
WCFS1]
Length = 896
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 104/195 (53%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N V M +++ L+TGPN GKS+ +R + ++ G VPA+SA +P FD I
Sbjct: 588 SYVPNNVTMSPDETVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIF 647
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + + T+ SLVL DEI RGT T G +A +IIE
Sbjct: 648 TRIGATDDLISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEF 707
Query: 776 LDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N I + STH H + +L ++ +G DG+ V K+ G +S
Sbjct: 708 VHNHIHAKTLFSTHYHELTALDQELSGLRNVHVGATEQDGELVFLHKVEPGAADKSYGVH 767
Query: 835 TAKREGVPETIIQRA 849
AK G+P ++++RA
Sbjct: 768 VAKLAGMPTSLLERA 782
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIP 96
K+ + + K+++P L R+GDFYE DA L+E L IP
Sbjct: 6 KDTPMMRQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELT-LTTRNHSAENPIP 64
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P ++ +D L GY V I E+++ P A+ R + PG+
Sbjct: 65 MCGVPHRAVQNYIDILVDKGYKVAICEQMEDPKLAKGMVKREVIQLVTPGT 115
>gi|395792580|ref|ZP_10472004.1| DNA mismatch repair protein mutS [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432137|gb|EJF98126.1| DNA mismatch repair protein mutS [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 913
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 14/243 (5%)
Query: 611 IGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSL 670
I ++L H++ GR P ++ L+ P+ + + S N ++
Sbjct: 611 IDQSLTFHITAGRH-----PVVE-------QALRKQAAEPFVANNCDLSVQENH-QYAAI 657
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
+LLTGPN GGKS+ LR +++ G VPA +A I D + + + D A G+S+
Sbjct: 658 WLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATAAHIGVVDRLFSRVGASDDLARGRST 717
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHL 789
F +EM E +I+ + SLV++DEI RGT T G IA + +E L + C I++TH
Sbjct: 718 FMMEMVETATILNHASHHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNHCRAILATHF 777
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + +L K+ M + DG V ++ G S + AK G+PE +I RA
Sbjct: 778 HEMTALTQKLDRLHNVTMKVKNWDGDVVFLHEVTKGAADRSYGVQVAKLAGLPEAVITRA 837
Query: 850 EDL 852
D+
Sbjct: 838 TDV 840
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV
Sbjct: 32 QYIEIKAVNHDSLLFYRMGDFYELFFNDAVEAAQALGITLTTRGKHLGEDIPMCGVPVHC 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 137
L L GY V + E+ + P +A+ R S+
Sbjct: 92 ADDYLQKLIACGYRVAVCEQTEDPAEAKKRGSK 124
>gi|423518406|ref|ZP_17494887.1| DNA mismatch repair protein mutS [Bacillus cereus HuA2-4]
gi|401161133|gb|EJQ68501.1| DNA mismatch repair protein mutS [Bacillus cereus HuA2-4]
Length = 890
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +PE+
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPES 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|423483360|ref|ZP_17460050.1| DNA mismatch repair protein mutS [Bacillus cereus BAG6X1-2]
gi|401140911|gb|EJQ48466.1| DNA mismatch repair protein mutS [Bacillus cereus BAG6X1-2]
Length = 890
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 8/222 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQPPPSIIGASCVYVMLRP 885
+I RA+++ G + ++I R + + + V V P
Sbjct: 778 LIARAKEVLAQLEGQDEIVIPKRVEVKVQEVASEPVVVKEEP 819
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|193213235|ref|YP_001999188.1| DNA mismatch repair protein MutS [Chlorobaculum parvum NCIB 8327]
gi|238692657|sp|B3QPY5.1|MUTS_CHLP8 RecName: Full=DNA mismatch repair protein MutS
gi|193086712|gb|ACF11988.1| DNA mismatch repair protein MutS [Chlorobaculum parvum NCIB 8327]
Length = 876
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 3/209 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q L ++TGPN GKSS LR LL G VPAESA I D I + + D+ G
Sbjct: 621 QQLLIITGPNMAGKSSYLRQAGLVVLLAQVGSFVPAESAEIGLVDRIFTRVGASDNLTSG 680
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM+E SI+ T RSL+L+DEI RGT T G IA S+ E + D + + +
Sbjct: 681 ESTFLVEMNEAASILNNATERSLLLLDEIGRGTSTFDGMSIAWSMCEFIHDRLRARTLFA 740
Query: 787 THLHGIFSLPLKIKN-AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
TH H + L + + + A E D + K+V G S E AK G+P +
Sbjct: 741 THYHELAELESRFERIVNFNATVVETAD-TVIFLRKIVRGASDNSYGIEVAKMAGMPPEV 799
Query: 846 IQRAEDLYIACGVNCVMIAAREQPPPSII 874
I+RA ++ V + + + PP ++
Sbjct: 800 IERAREILAGMERREVEVPTQREAPPRVV 828
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 36 NGSLKEGT-LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE- 93
G KE T + + L+ K ++P VLL RVGDFYE DA + A LN R
Sbjct: 6 QGRKKEPTPMMRQYLEVKERYPEYVLLFRVGDFYETFLDDAVTV--SAALNIVLTKRSNG 63
Query: 94 ---SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYV 150
IP AG P + L G+ V + ++V+ P A+ R I+ PG Y
Sbjct: 64 SAGEIPLAGFPHHASEGYIAKLVTKGFKVAVCDQVEDPALAKGIVKREITDIVTPGITYS 123
Query: 151 FGLVGIDHD 159
++ H+
Sbjct: 124 DKILDDRHN 132
>gi|335033077|ref|ZP_08526449.1| DNA mismatch repair protein mutS [Agrobacterium sp. ATCC 31749]
gi|44888231|sp|Q8UIF2.1|MUTS_AGRT5 RecName: Full=DNA mismatch repair protein MutS
gi|333795753|gb|EGL67078.1| DNA mismatch repair protein mutS [Agrobacterium sp. ATCC 31749]
Length = 904
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 112/213 (52%), Gaps = 2/213 (0%)
Query: 641 NCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLM 700
L+ P+ + + SAV N +++LLTGPN GGKS+ LR ++L G
Sbjct: 622 QALRRQSAGPFIANNCDLSAV-NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSF 680
Query: 701 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT 760
VPAE+A I D + + + D A G+S+F VEM E +I+ T RSLV++DEI RGT
Sbjct: 681 VPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGT 740
Query: 761 ETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 819
T G IA + +E L + C G+ +TH H + L K+ + M + +G +
Sbjct: 741 ATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGDVIFL 800
Query: 820 WKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
++ G S + A+ G+P ++++RA ++
Sbjct: 801 HEVGPGAADRSYGIQVARLAGLPASVVERAREV 833
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G IP G PV
Sbjct: 25 QYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVPVHA 84
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+++ P +A+ R S+ +
Sbjct: 85 ADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSV 119
>gi|423406806|ref|ZP_17383955.1| DNA mismatch repair protein mutS [Bacillus cereus BAG2X1-3]
gi|401660096|gb|EJS77579.1| DNA mismatch repair protein mutS [Bacillus cereus BAG2X1-3]
Length = 893
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 15/225 (6%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQ-------PPPSIIGASCVYV 881
+I RA+++ G ++I R + P P ++ + V V
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRTEVKVQEVTPEPVVVKEAPVEV 822
Score = 46.2 bits (108), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|225567942|ref|ZP_03776967.1| hypothetical protein CLOHYLEM_04015 [Clostridium hylemonae DSM
15053]
gi|225163230|gb|EEG75849.1| hypothetical protein CLOHYLEM_04015 [Clostridium hylemonae DSM
15053]
Length = 875
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 3/184 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPA SA + D I + + D A G+S+F
Sbjct: 611 VITGPNMAGKSTYMRQTALIVLMSQIGSFVPASSADVGLVDRIFTRVGASDDLASGQSTF 670
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTH 788
VEM+E+ +I+ T RSL+++DEI RGT T G IA ++IE + N LG + +TH
Sbjct: 671 MVEMTEVANILRNATGRSLLILDEIGRGTSTFDGLSIAWAVIEHISNSRLLGAKTLFATH 730
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L KI N + + V K+V G +S + AK GVP+T+I+R
Sbjct: 731 YHELTELEGKIDNVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDTVIER 790
Query: 849 AEDL 852
A+++
Sbjct: 791 AKEI 794
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 20/160 (12%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVVNLRQT 108
K ++P +L R+GDFYE DA + G GL E P G P +
Sbjct: 9 KKEYPDCILFYRLGDFYEMFFEDALTASRELEITLTGKNCGLE-ERAPMCGIPYHAVDGY 67
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPV 168
L+ L GY V I E+++ P A+ R + PG+ +LD
Sbjct: 68 LNRLVSKGYKVAICEQMEDPAAAKGLVRREVVRIVTPGT-----------NLD----TQA 112
Query: 169 IGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTS 208
+ +++ C++ I + S+ D T D VT+L TS
Sbjct: 113 LDETKNNYIMCVVYIADRY-GLSVADVTTGDYFVTELETS 151
>gi|423395931|ref|ZP_17373132.1| DNA mismatch repair protein mutS [Bacillus cereus BAG2X1-1]
gi|401653673|gb|EJS71217.1| DNA mismatch repair protein mutS [Bacillus cereus BAG2X1-1]
Length = 893
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 15/225 (6%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQ-------PPPSIIGASCVYV 881
+I RA+++ G ++I R + P P ++ + V V
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRTEVKVQEVTPEPVVVKEAPVEV 822
Score = 46.2 bits (108), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|418628482|ref|ZP_13191027.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU127]
gi|374837328|gb|EHS00894.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU127]
Length = 873
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 122/271 (45%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L +K + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTPLDQMLKCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + G+T++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHENTDDQQTVPSYNDFGRTEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQNGMD 120
>gi|398310794|ref|ZP_10514268.1| DNA mismatch repair protein MutS [Bacillus mojavensis RO-H-1]
Length = 858
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D G
Sbjct: 595 RQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAMLPIFDQIFTRIGAADDLISG 654
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG + S
Sbjct: 655 QSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFS 714
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L K+ + E +G V ++ +G +S A+ +P +I
Sbjct: 715 THYHELTVLEEKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPADLI 774
Query: 847 QRAEDL 852
RA+D+
Sbjct: 775 SRAQDI 780
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+ + P A+ R + PG+
Sbjct: 70 ASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT 112
>gi|423713241|ref|ZP_17687501.1| DNA mismatch repair protein mutS [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423282|gb|EJF89477.1| DNA mismatch repair protein mutS [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 913
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 14/243 (5%)
Query: 611 IGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSL 670
I ++L H++ GR P ++ L+ P+ + + S N ++
Sbjct: 611 IDQSLTFHITAGRH-----PVVE-------QALRKQAAEPFVANNCDLSVQENH-QYAAI 657
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
+LLTGPN GGKS+ LR +++ G VPA +A I D + + + D A G+S+
Sbjct: 658 WLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATAAHIGVVDRLFSRVGASDDLARGRST 717
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHL 789
F +EM E +I+ + SLV++DEI RGT T G IA + +E L + C I++TH
Sbjct: 718 FMMEMVETATILNHASHHSLVILDEIGRGTSTFDGLSIAWAAVEYLHEVNHCRAILATHF 777
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + +L K+ M + DG V ++ G S + AK G+PE +I RA
Sbjct: 778 HEMTALTQKLDRLHNVTMKVKNWDGDVVFLHEVTKGAADRSYGVQVAKLAGLPEAVITRA 837
Query: 850 EDL 852
D+
Sbjct: 838 TDV 840
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G E IP G PV
Sbjct: 32 QYIEIKAVNHDSLLFYRMGDFYELFFNDAVEAAQALGITLTTRGKHLGEDIPMCGVPVHC 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 137
L L GY V + E+ + P +A+ R S+
Sbjct: 92 ADDYLQKLIACGYRVAVCEQTEDPAEAKKRGSK 124
>gi|429505258|ref|YP_007186442.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486848|gb|AFZ90772.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 842
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 574 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 633
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 634 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 693
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 694 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 753
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 754 LISRAQEI 761
>gi|440297793|gb|ELP90434.1| DNA mismatch repair protein msH6, putative [Entamoeba invadens IP1]
Length = 959
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 115/209 (55%), Gaps = 6/209 (2%)
Query: 650 PYWFDAAEGSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 704
PY +++ +AV + ++M +LTGPN GGKS+LLR++C A ++ G+ AE
Sbjct: 719 PYLTVSSKTTAVPSDIEMGGENTPKSIVLTGPNMGGKSTLLRTVCLAVIMAQMGMRCTAE 778
Query: 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAK 764
++ D I + + D G S+F VE+ E ++ + + SLV++DE+ RGT T
Sbjct: 779 ELTMSVIDRIFTRIGASDDILHGMSTFMVELDETAQMLHSASENSLVVLDELGRGTSTHD 838
Query: 765 GTCIAGSII-ETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLV 823
G IA +++ T+ +I L IVSTH H + + MG ++ + V +KL+
Sbjct: 839 GLAIAHAVVLYTIKHIKPLLIVSTHYHQLCEEFGDRGDVKLSHMGCTIVENKIVFLYKLL 898
Query: 824 DGICRESLAFETAKREGVPETIIQRAEDL 852
DG C +S + A+ G+P+ +++RAE +
Sbjct: 899 DGSCPKSYGMKVAEMAGIPQDVVKRAESI 927
>gi|394994051|ref|ZP_10386787.1| DNA mismatch repair protein MutS [Bacillus sp. 916]
gi|393805130|gb|EJD66513.1| DNA mismatch repair protein MutS [Bacillus sp. 916]
Length = 861
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 772
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 773 LISRAQEI 780
>gi|349699980|ref|ZP_08901609.1| DNA mismatch repair protein MutS [Gluconacetobacter europaeus LMG
18494]
Length = 869
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ LLTGPN GKS+ LR A +L GL V A+S I D + + + D A G+S
Sbjct: 618 VMLLTGPNMAGKSTFLRQTALAVILAQAGLPVAAQSMRIGVVDRLFSRVGASDDLARGRS 677
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM+E +I+ RSLV++DEI RGT T G IA +++ETL + C I +TH
Sbjct: 678 TFMVEMTETAAILNQAGPRSLVVVDEIGRGTSTLDGLAIAWAVLETLHSTLRCRAIFATH 737
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L + + M GQ + ++V G R S A+ GVPE +++R
Sbjct: 738 FHELAELADSMPRLSPHTMSVREWKGQVIFQHEVVPGSARRSWGVHVARLAGVPEPVVRR 797
Query: 849 A 849
A
Sbjct: 798 A 798
>gi|154686121|ref|YP_001421282.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens FZB42]
gi|189030693|sp|A7Z4X5.1|MUTS_BACA2 RecName: Full=DNA mismatch repair protein MutS
gi|154351972|gb|ABS74051.1| MutS [Bacillus amyloliquefaciens FZB42]
Length = 862
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 594 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 653
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 654 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 713
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 714 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 773
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 774 LISRAQEI 781
>gi|375362350|ref|YP_005130389.1| DNA mismatch repair protein mutS [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371568344|emb|CCF05194.1| DNA mismatch repair protein mutS [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 862
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 594 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 653
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 654 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 713
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 714 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 773
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 774 LISRAQEI 781
>gi|299144077|ref|ZP_07037157.1| DNA mismatch repair protein MutS [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518562|gb|EFI42301.1| DNA mismatch repair protein MutS [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 868
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ ++TGPN GKS+ +R + ++ G VP ESA+I D I + + D+ A G S
Sbjct: 616 IHIITGPNMAGKSTYMRQVAIIVIMAHMGSYVPCESANISLVDKIFTRIGASDNLAKGDS 675
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E+ +IV T SL+++DE+ RGT T G IA +++E L NI + +TH
Sbjct: 676 TFMVEMKEVANIVKNATKNSLIILDEVGRGTSTYDGLSIAWALVEYLVTNIHAKTLFATH 735
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L K N + E + V K+V+G S + AK G+ + IIQR
Sbjct: 736 YHELVNLSNKYNNINNLTISVEKQNDSIVFLRKIVEGFSNNSYGIDVAKLAGINDFIIQR 795
Query: 849 AEDL 852
+ ++
Sbjct: 796 SNEI 799
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN-PFGGLRPESIPKAGCPVVNL 105
+ L+ K K E+L R+GDFYE DA I + + E+ P G P
Sbjct: 4 QYLEIKKKHKDEILFFRLGDFYEMFFEDAIIASKELEITLTKRSSTGENTPMCGVPYHVA 63
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHD 159
+ L GY V I ++++ P A++ R ++ PG+ F + D +
Sbjct: 64 DSYISKLINKGYKVAICDQMEDPKLAKTIVKREVTKIVTPGTFTDFNYLKKDEN 117
>gi|237709143|ref|ZP_04539624.1| DNA mismatch repair protein [Bacteroides sp. 9_1_42FAA]
gi|423240802|ref|ZP_17221916.1| DNA mismatch repair protein mutS [Bacteroides dorei CL03T12C01]
gi|229456839|gb|EEO62560.1| DNA mismatch repair protein [Bacteroides sp. 9_1_42FAA]
gi|392643764|gb|EIY37513.1| DNA mismatch repair protein mutS [Bacteroides dorei CL03T12C01]
Length = 883
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 621 ETQQIIIITGPNMAGKSALLRQTALITLLAQMGSFVPAESARIGMVDKIFTRVGASDNIS 680
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E +I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 681 VGESTFMVEMNEAANILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHPKAKAR 740
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 741 TLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 800
Query: 843 ETIIQRAEDL 852
++I++RA D+
Sbjct: 801 KSIVKRANDI 810
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ + K+K P ++L R GDFYE DA + E G L + +S+ AG P
Sbjct: 26 QFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAGFPFHA 85
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 86 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 127
>gi|448566814|ref|ZP_21637069.1| DNA mismatch repair protein MutS [Haloferax prahovense DSM 18310]
gi|445713403|gb|ELZ65180.1| DNA mismatch repair protein MutS [Haloferax prahovense DSM 18310]
Length = 914
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 101/200 (50%), Gaps = 3/200 (1%)
Query: 656 AEGSAVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
A+ V N D+ S+ L+TGPN GKS+ +R + +L G VPAESA +P D
Sbjct: 618 AQDEFVPNPADLPRGSVALVTGPNMSGKSTYMRQVALVCVLAQVGSFVPAESARLPVLDR 677
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D A G+S+F EMSE+ I+ T SLVL+DE+ RGT TA G IA +
Sbjct: 678 VFTRIGASDDIAGGQSTFMREMSELTEILHNATGDSLVLLDEVGRGTSTADGLAIARAAT 737
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E L D +G + +TH H + + DG+ + DG S
Sbjct: 738 EFLHDEVGATTLFATHYHDLTDAADDREGVFNHHFTAARRDGEVTFLHSVADGPSSSSYG 797
Query: 833 FETAKREGVPETIIQRAEDL 852
E A+ GVP ++++RA DL
Sbjct: 798 VEVAQLAGVPASVVERARDL 817
>gi|418296833|ref|ZP_12908676.1| DNA mismatch repair protein MutS [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539008|gb|EHH08250.1| DNA mismatch repair protein MutS [Agrobacterium tumefaciens
CCNWGS0286]
Length = 904
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 112/213 (52%), Gaps = 2/213 (0%)
Query: 641 NCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLM 700
L+ P+ + + SAV N +++LLTGPN GGKS+ LR ++L G
Sbjct: 622 QALRRQSAGPFIANNCDLSAV-NGGKNGAIWLLTGPNMGGKSTFLRQNALITILAQIGSF 680
Query: 701 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT 760
VPAE+A I D + + + D A G+S+F VEM E +I+ T RSLV++DEI RGT
Sbjct: 681 VPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGT 740
Query: 761 ETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 819
T G IA + +E L + C G+ +TH H + L K+ + M + +G +
Sbjct: 741 ATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGDVIFL 800
Query: 820 WKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
++ G S + A+ G+P ++++RA ++
Sbjct: 801 HEVGPGAADRSYGIQVARLAGLPASVVERAREV 833
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G IP G PV
Sbjct: 25 QYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRSLGITLTKRGQHMGHDIPMCGVPVHA 84
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+V+ P +A+ R S+ +
Sbjct: 85 ADDYLQKLILRGYRVAVCEQVEDPAEAKKRGSKSV 119
>gi|421731624|ref|ZP_16170747.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451346923|ref|YP_007445554.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens IT-45]
gi|407073837|gb|EKE46827.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449850681|gb|AGF27673.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens IT-45]
Length = 861
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 652
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 772
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 773 LISRAQEI 780
>gi|304316821|ref|YP_003851966.1| DNA mismatch repair protein MutS [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778323|gb|ADL68882.1| DNA mismatch repair protein MutS [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 857
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 140/298 (46%), Gaps = 8/298 (2%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E + T +++E E+ A K E+ G+ +++ +IN + S + + L +
Sbjct: 501 ERYITPELKEIEEKILGAETKLVELEYEIFNGIREQIKNEINRIQMTSKYIAVLDVLTSL 560
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS---LFLLTG 675
+V P + D G L +G P + S + N +++ + ++TG
Sbjct: 561 AMVAESNNYVKPIVND----GDRILIKDGRHPVIETIVDDSFISNDIEIDEKKPIMIITG 616
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ +R + L+ G VPA A I D I + + D G+S+F VEM
Sbjct: 617 PNMAGKSTYMRQVALIVLMAQVGSFVPASYAEIGIVDRIFTRVGASDDLFSGQSTFMVEM 676
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
+E+ I+ + T +SL+++DE+ RGT T G IA +I+E + D I + +TH H +
Sbjct: 677 NEVSVILNSATQKSLIILDEVGRGTSTYDGMSIACAILEYIHDKIKAKTMFATHYHELTK 736
Query: 795 LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
L ++ + + + + + K++ G +S + AK G+P +I A+ +
Sbjct: 737 LENQLNGIKNYNISVDETNDEIIFLRKIIPGSADKSYGIQVAKLAGLPNDVIDNAKKI 794
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGL--RPESIPKAGCPVVN 104
+ + K K+ +L R+GDFYE DA I + + G + E P AG P
Sbjct: 9 QYFKIKEKYKDSILFFRIGDFYEMFFDDAIIAAKELEIVLTGKDCGQDERAPMAGVPFHA 68
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P A+ R + PG+
Sbjct: 69 ADFYIDKLVKKGYKVAICEQLEDPASAKGLVDRDVIRVFTPGT 111
>gi|415886657|ref|ZP_11548437.1| DNA mismatch repair protein MutS [Bacillus methanolicus MGA3]
gi|387587344|gb|EIJ79667.1| DNA mismatch repair protein MutS [Bacillus methanolicus MGA3]
Length = 870
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 9/190 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R I ++L G VPA A +P FD + + + D G
Sbjct: 600 REILLITGPNMSGKSTYMRQIALTAILAQIGCFVPASEAVLPIFDQVFTRIGAADDLISG 659
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVS 786
+S+F VEM E ++ +T T SL+L DEI RGT T G +A +IIE + N IG + S
Sbjct: 660 QSTFMVEMLEAKNAITNATKDSLILFDEIGRGTSTYDGMALAQAIIEYIHNRIGAKTLFS 719
Query: 787 THLHGIF----SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
TH H + LP K+KN A+ +G+ V K+ +G +S A+ +P
Sbjct: 720 THYHELTVLEEELP-KVKNVHVSAIEQ---NGKVVFLHKIKEGAADKSYGIHVAQLAELP 775
Query: 843 ETIIQRAEDL 852
E +I RA ++
Sbjct: 776 EDLINRANEI 785
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ LQ K+ + L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLQIKADYQDAFLFFRLGDFYEMFFDDAIKASQELEITLTSRDGGGDERIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+ + P QA+ R + PG+
Sbjct: 70 AASYIEQLIEKGYKVAICEQTEDPKQAKGVVKREVVQLITPGT 112
>gi|212692537|ref|ZP_03300665.1| hypothetical protein BACDOR_02034 [Bacteroides dorei DSM 17855]
gi|212664822|gb|EEB25394.1| DNA mismatch repair protein MutS [Bacteroides dorei DSM 17855]
Length = 861
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 599 ETQQIIIITGPNMAGKSALLRQTALITLLAQMGSFVPAESARIGMVDKIFTRVGASDNIS 658
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E +I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 659 VGESTFMVEMNEAANILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHPKAKAR 718
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 719 TLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 778
Query: 843 ETIIQRAEDL 852
++I++RA D+
Sbjct: 779 KSIVKRANDI 788
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ + K+K P ++L R GDFYE DA + E G L + +S+ AG P
Sbjct: 4 QFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAGFPFHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 64 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 105
>gi|456369850|gb|EMF48750.1| DNA mismatch repair protein [Streptococcus parauberis KRS-02109]
Length = 851
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 1/180 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + S++ G V A+ A IP FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLALTSIMAQLGSYVAADLAEIPIFDAIFTRIGAADDLISGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A SIIE + D++G + +TH H
Sbjct: 659 MVEMMEANQAIKGASPRSLILFDELGRGTATYDGMALAQSIIEFIHDHVGAKTMFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++K+ + T +G+ K+ G +S AK G+P+ ++QRA+
Sbjct: 719 ELTDLSSRLKSLTNVHVATLEENGEVTFLHKIAQGPADKSYGIHVAKIAGLPKELLQRAD 778
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + GL IP AG P +
Sbjct: 12 QYLDIKVNYPDAFLLFRMGDFYELFYDDAVKAAQILEIGLTSRNKNAENPIPMAGVPHHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P +A R + PG+
Sbjct: 72 AQQYIDVLIEQGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|452855651|ref|YP_007497334.1| DNA mismatch repair recognition factor [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452079911|emb|CCP21669.1| DNA mismatch repair recognition factor [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 862
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 594 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 653
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 654 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 713
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 714 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 773
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 774 LISRAQEI 781
>gi|385264831|ref|ZP_10042918.1| DNA mismatch repair protein MutS [Bacillus sp. 5B6]
gi|385149327|gb|EIF13264.1| DNA mismatch repair protein MutS [Bacillus sp. 5B6]
Length = 862
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 594 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 653
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 654 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 713
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 714 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 773
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 774 LISRAQEI 781
>gi|375088944|ref|ZP_09735281.1| DNA mismatch repair protein MutS [Dolosigranulum pigrum ATCC 51524]
gi|374561111|gb|EHR32460.1| DNA mismatch repair protein MutS [Dolosigranulum pigrum ATCC 51524]
Length = 868
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 4/197 (2%)
Query: 657 EGSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
+ S V N ++M + + L+TGPN GKS+ +R + ++G G VPA AS+P FD
Sbjct: 590 DQSYVPNDIEMTNETDILLITGPNMSGKSTYMRQLALIVIMGQMGCFVPASHASLPLFDQ 649
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D G+S+F VEM+E + TSRSL+L DEI RGT T G +A +II
Sbjct: 650 IFTRIGAMDDLFGGQSTFMVEMNETNHAIQNATSRSLLLFDEIGRGTATYDGMALAEAII 709
Query: 774 ETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + N IG + STH H + L ++ +G G V K+ G +S
Sbjct: 710 EYVHNRIGAKTLFSTHYHELTELSKRLDKLENIHVGAVEERGSLVFLHKIKPGPGDKSYG 769
Query: 833 FETAKREGVPETIIQRA 849
+ A+ G+PE ++ RA
Sbjct: 770 VQVAQLAGLPEDLLDRA 786
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESI--PK 97
K + + L K P L R+GDFYE DA + + L + + P
Sbjct: 7 KHTPMMQQYLTMKENHPDAFLFFRLGDFYELFFEDAKEVAQLLELTLTSRNKKAEVEVPM 66
Query: 98 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P + + ++ L GY V + E+V+ P +A+ R + PG+
Sbjct: 67 CGVPHHSAQGYINQLVEMGYKVAVCEQVEDPKEAKGMVKREVVQVITPGT 116
>gi|226324941|ref|ZP_03800459.1| hypothetical protein COPCOM_02733 [Coprococcus comes ATCC 27758]
gi|225206289|gb|EEG88643.1| DNA mismatch repair protein MutS [Coprococcus comes ATCC 27758]
Length = 883
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 103/188 (54%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKS+ +R L+ G VPA SA+I D I + + D A G
Sbjct: 614 QRISIITGPNMAGKSTYMRQAALIVLMAQLGSFVPASSANIGLVDRIFTRVGASDDLASG 673
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---I 784
+S+F VEM+E+ +I+ TS+SL+++DEI RGT T G IA +++E + N LG +
Sbjct: 674 QSTFMVEMNEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVVEYISNSKLLGAKTL 733
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L KI N + + V K+V G +S + AK GVP+
Sbjct: 734 FATHYHELTELEGKISNVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDP 793
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 794 VINRAKEI 801
Score = 43.5 bits (101), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ +Q K ++ +L R+GDFYE DA + + G GL E P G P
Sbjct: 11 QYMQTKEEYKDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLE-ERAPMCGIPYH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L+ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AVDSYLNRLVSKGYKVAICEQVEDPKTAKGIVKREVIRVVTPGT 113
>gi|329117512|ref|ZP_08246229.1| DNA mismatch repair protein MutS [Streptococcus parauberis NCFD
2020]
gi|326907917|gb|EGE54831.1| DNA mismatch repair protein MutS [Streptococcus parauberis NCFD
2020]
Length = 851
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 1/180 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + S++ G V A+ A IP FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLALTSIMAQLGSYVAADLAEIPIFDAIFTRIGAADDLISGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A SIIE + D++G + +TH H
Sbjct: 659 MVEMMEANQAIKGASPRSLILFDELGRGTATYDGMALAQSIIEFIHDHVGAKTMFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++K+ + T +G+ K+ G +S AK G+P+ ++QRA+
Sbjct: 719 ELTDLSSRLKSLTNVHVATLEENGEVTFLHKIAQGPADKSYGIHVAKIAGLPKELLQRAD 778
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + GL IP AG P +
Sbjct: 12 QYLDIKVNYPDAFLLFRMGDFYELFYDDAVKAAQILEIGLTSRNKNAENPIPMAGVPHHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P +A R + PG+
Sbjct: 72 AQQYIDVLIEQGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|253577912|ref|ZP_04855184.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850230|gb|EES78188.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 874
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 10/208 (4%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPAE A+I D I + + D A G+S+F
Sbjct: 614 IITGPNMAGKSTYMRQTALIVLMAQIGSFVPAEKANIGIVDRIFTRVGASDDLASGQSTF 673
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI---GCLGIVSTH 788
VEM+E+ +I+ T+RSL+++DEI RGT T G IA ++IE + N G + +TH
Sbjct: 674 MVEMTEVANILRNATARSLLILDEIGRGTSTFDGLAIAWAVIEHISNTKLCGAKTLFATH 733
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L KI + + V K+V G +S + AK GVP+++IQR
Sbjct: 734 YHELTELEGKIPGVNNYCIAVKEKGDDIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIQR 793
Query: 849 AEDLY-------IACGVNCVMIAAREQP 869
A++L I V + A +++P
Sbjct: 794 AKELVEELSDADITAAVKDLTSAKKKKP 821
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
E + K ++ +L R+GDFYE DA ++ + G GL E P G P
Sbjct: 7 EYCKTKEQYKDCILFYRLGDFYEMFFDDALLVTRELEITLTGKDCGLE-ERAPMCGVPYH 65
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L G+ V I E+V+ P +A+ R + PG+
Sbjct: 66 AAETYINRLIERGHKVAICEQVEDPKKAKGLVKREVVRIVTPGT 109
>gi|242242579|ref|ZP_04797024.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
W23144]
gi|242234006|gb|EES36318.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
W23144]
Length = 877
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 121/271 (44%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 600 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 659
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 660 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 719
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL + + G+ + K+ DG +S + AK +P +I R
Sbjct: 720 YHELTSLDQMLNCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 779
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + GQ ++ I H
Sbjct: 780 AQ----------VILNAFEQKPSYQLSHQDTDNQRTVPSYNDFGQIEEEQSVIETHTSNH 829
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 830 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 860
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 14 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 74 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIVTPGT--VMDQSGMD 124
>gi|328779790|ref|XP_392346.4| PREDICTED: probable DNA mismatch repair protein Msh6 [Apis mellifera]
Length = 1129
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 24/331 (7%)
Query: 539 EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTK 598
+ Q K++ + + ++ G + + T + +E L R A + +L R + ++ K
Sbjct: 774 DSQTKKVGAGFELQSQRKGYKRYYTAESKELLSRQINAEEHRDKVLKDLNRRIFAQFSEK 833
Query: 599 INILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD-------IEL-DGAN-CLKMNGLS 649
++ A L + L + P + D I++ DG + C+ +
Sbjct: 834 YDMWSMAVYKLSVLDVLISLTEYAFSGDMCIPEINDGTNEKIFIDIRDGRHPCIISDTFI 893
Query: 650 PYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 709
P + T + S +LTGPN GGKS+L+R + +++ G VPA S +
Sbjct: 894 P-------NDTLLATENFASFMILTGPNMGGKSTLMRQVALLTIMAQIGSYVPASSCRLT 946
Query: 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 769
D I + + D G+S+F VE+SE +I+ T SLVL+DE+ RGT T GT IA
Sbjct: 947 LVDRIFTRLGANDDILAGQSTFLVELSETSAILQHATPYSLVLLDELGRGTSTYDGTAIA 1006
Query: 770 GSIIETLDNIGCLGIVSTHLHGI---FSLPLKIKNAAYKAM-GTEYLDGQTVPT----WK 821
+++ L + C + STH H + + KI A M E D + T +K
Sbjct: 1007 AAVVNALTKLNCRTLFSTHYHSLVEDYKNNKKITLAHMACMVENEEQDKVSQETVTFLYK 1066
Query: 822 LVDGICRESLAFETAKREGVPETIIQRAEDL 852
L +G C +S F A+ GVP I RA ++
Sbjct: 1067 LSEGACPKSYGFNAARLGGVPAVITSRAHEI 1097
>gi|229018965|ref|ZP_04175807.1| DNA mismatch repair protein mutS [Bacillus cereus AH1273]
gi|229025208|ref|ZP_04181632.1| DNA mismatch repair protein mutS [Bacillus cereus AH1272]
gi|228736141|gb|EEL86712.1| DNA mismatch repair protein mutS [Bacillus cereus AH1272]
gi|228742293|gb|EEL92451.1| DNA mismatch repair protein mutS [Bacillus cereus AH1273]
Length = 884
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 104/188 (55%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA+ A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPAKEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|311030164|ref|ZP_07708254.1| DNA mismatch repair protein MutS [Bacillus sp. m3-13]
Length = 857
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + ++L G VPA+ AS+P FD I + + D G+S
Sbjct: 601 MLLITGPNMSGKSTYMRQVALTAILAQIGCFVPAKEASLPIFDQIFTRIGAADDLISGQS 660
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E R+ + T SL+L DEI RGT T G +A ++IE + D IG + STH
Sbjct: 661 TFMVEMLEARNAIVYATQNSLILFDEIGRGTSTYDGMALAQALIEYIHDKIGAKTLFSTH 720
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL ++K + +G+ V K+ +G +S A+ +P+ +I R
Sbjct: 721 YHELTSLDEELKKLKNIHVSVVEQNGKVVFLHKMKEGPADKSYGIHVAELAELPKELIIR 780
Query: 849 AE 850
A+
Sbjct: 781 AQ 782
Score = 46.6 bits (109), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K+ + L R+GDFYE DA ++E + GG + E IP G P
Sbjct: 10 QYLRVKADYQDAFLFFRLGDFYEMFFEDATKASQVLEITLTSRDGGGK-ERIPMCGVPYH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L G+ V I E+V+ P Q + R + PG+
Sbjct: 69 SAPNYIDQLIEKGFKVAICEQVEDPKQTKGVVKREVVQLITPGT 112
>gi|152976135|ref|YP_001375652.1| DNA mismatch repair protein MutS [Bacillus cytotoxicus NVH 391-98]
gi|189030697|sp|A7GR99.1|MUTS_BACCN RecName: Full=DNA mismatch repair protein MutS
gi|152024887|gb|ABS22657.1| DNA mismatch repair protein MutS [Bacillus cytotoxicus NVH 391-98]
Length = 895
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 141/290 (48%), Gaps = 27/290 (9%)
Query: 579 KAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--------FAHVSEGRRRKWVFP 630
+A+ K+++L L + L+ ++ VF L + K + FA VSE R +V P
Sbjct: 507 EAEEKIVQLEYDLFTALREEVK--VFIPKLQHLAKVISELDVLQSFATVSEEER--FVKP 562
Query: 631 ALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDM---QSLFLLTGPNGGGKSSLLR 686
L + +G P +G V N M +FL+TGPN GKS+ +R
Sbjct: 563 VLTN----KREIFIKDGRHPVVEKVLDGKLYVPNDCMMPENMDVFLITGPNMSGKSTYMR 618
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ +++ G VPA A +P FD I + + D G+S+F VEM E ++ + +
Sbjct: 619 QLALVTIMAQIGCFVPATEAILPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANAS 678
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP---LKIKNA 802
RSL+L DEI RGT T G +A +IIE + D IG + STH H + L +KN
Sbjct: 679 ERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLTHLKNV 738
Query: 803 AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
A+ DG+ V K+ +G +S A+ +P+++I RA+++
Sbjct: 739 HVSAIEE---DGKVVFLHKIQEGAADKSYGIHVAQLAELPDSLIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYKDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 70 AQNYIEQLIEKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|298373253|ref|ZP_06983242.1| DNA mismatch repair protein MutS [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274305|gb|EFI15857.1| DNA mismatch repair protein MutS [Bacteroidetes oral taxon 274 str.
F0058]
Length = 896
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKS+LLR L+ G VPAESASI D I + + D+ A G
Sbjct: 634 QQIIIITGPNMAGKSALLRQTALIVLMAQIGCYVPAESASIGIVDKIFTRVGASDNIASG 693
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLG--I 784
+S+F VEM+E SI+ + RSL+L DE+ RGT T G IA +I+E + + C +
Sbjct: 694 ESTFMVEMNEAASILNNISDRSLILFDELGRGTSTYDGISIAWAIVEYIHEMPKCRAKTL 753
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + + + + +DG+ + KLV G S AK G+P +
Sbjct: 754 FATHYHELNEMERSYRRIKNYNVSVREVDGKVLFIRKLVRGGSEHSFGIHVAKIAGMPPS 813
Query: 845 IIQRAEDLYI 854
+I+RA+++ +
Sbjct: 814 VIKRADEILL 823
Score = 43.1 bits (100), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQ 107
+ K K+P +LL RVGDFYE DA G L + AG P L
Sbjct: 39 EIKEKYPDALLLFRVGDFYETFAEDAVKAASILGITLTKRQNGAAAHVELAGFPHHALDT 98
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L R G V + ++++ P ++ R ++ PG
Sbjct: 99 YLPKLVRAGLRVAVCDQLEDPKLTKTLVKRGVTELVTPG 137
>gi|345517023|ref|ZP_08796503.1| DNA mismatch repair protein mutS [Bacteroides sp. 4_3_47FAA]
gi|254833801|gb|EET14110.1| DNA mismatch repair protein mutS [Bacteroides sp. 4_3_47FAA]
Length = 883
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 621 ETQQIIIITGPNMAGKSALLRQTALITLLAQMGSFVPAESARIGMVDKIFTRVGASDNIS 680
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E +I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 681 VGESTFMVEMNEAANILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHPKAKAR 740
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 741 TLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 800
Query: 843 ETIIQRAEDL 852
++I++RA D+
Sbjct: 801 KSIVKRANDI 810
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ + K+K P ++L R GDFYE DA + E G L + +S+ AG P
Sbjct: 26 QFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAGFPFHA 85
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 86 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 127
>gi|110834670|ref|YP_693529.1| DNA mismatch repair protein MutS [Alcanivorax borkumensis SK2]
gi|122959403|sp|Q0VNJ1.1|MUTS_ALCBS RecName: Full=DNA mismatch repair protein MutS
gi|110647781|emb|CAL17257.1| DNA mismatch repair protein MutS [Alcanivorax borkumensis SK2]
Length = 859
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 7/295 (2%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T +++E ++ A +KA A L L ++ ++ L ++ + L +
Sbjct: 496 ERFITPELKEFEDKALSASSKALALEKRLYEALLEKVAADLHALQRSAAAVAELDVLASL 555
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS---LFLLTG 675
WV P L D D A ++G P + + V N++ + + + ++TG
Sbjct: 556 AERAEALNWVLPQLVD---DEAIIEIVDGRHPVVEQVLDDAFVPNSLHLDNARRMVIITG 612
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GGKS+ +R +LL G VPA SA I D I + S D A G+S+F VEM
Sbjct: 613 PNMGGKSTYMRQTALIALLAHLGSCVPAASARIGSLDRIFTRIGSSDDLAGGRSTFMVEM 672
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
SE +I+ T++SLVL+DEI RGT T G +A + E L N+ + +TH +
Sbjct: 673 SETANILNNATAQSLVLMDEIGRGTSTFDGLSLAWAAAEHLARNLKSFTLFATHYFELTQ 732
Query: 795 LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
LP ++ + D + V ++ +G S + A+ GVP ++I RA
Sbjct: 733 LPEQLPGIYNAHLTASEHDNRIVFLHRVQEGPASRSYGLQVAQLAGVPSSVIHRA 787
>gi|409435804|ref|ZP_11263012.1| DNA mismatch repair protein mutS [Rhizobium mesoamericanum STM3625]
gi|408752562|emb|CCM74159.1| DNA mismatch repair protein mutS [Rhizobium mesoamericanum STM3625]
Length = 882
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 138/283 (48%), Gaps = 25/283 (8%)
Query: 575 EAGAKAKAKVLELLRGLS--SELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL 632
+AGA+A A V+++ GL+ ++ Q LV S + I V + RR+ P +
Sbjct: 554 KAGARALA-VIDVAAGLALLADEQAYCRPLVDHSKIFAIEGGRHPVVEQALRRQSSGPFV 612
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS 692
+ NC LSP D +G+ ++LLTGPN GGKS+ LR +
Sbjct: 613 AN------NC----DLSPVS-DGKDGA----------IWLLTGPNMGGKSTFLRQNALIA 651
Query: 693 LLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVL 752
+L G VPA SA I D + + + D A G+S+F VEM E +I+ T RSLV+
Sbjct: 652 ILAQTGSFVPAISAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVI 711
Query: 753 IDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 811
+DEI RGT T G IA + +E L C G+ +TH H + L K+ + M +
Sbjct: 712 LDEIGRGTATFDGLSIAWAAVEHLHEANRCRGLFATHFHELTVLSEKLARLSNATMRVKE 771
Query: 812 LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYI 854
DG + ++ G S + A+ G+P +++ RA D+ +
Sbjct: 772 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVSRARDVLM 814
Score = 46.6 bits (109), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + IP G PV
Sbjct: 4 QFIEIKANNPDSLLFYRMGDFYELFFEDALEASRALGITLTRRGQHMGQDIPMCGVPVHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L G+ V + E+V+ P +A+ R S+ +
Sbjct: 64 ADDYLQKLIALGFRVAVCEQVEDPAEAKKRGSKSV 98
>gi|260558367|ref|ZP_05830563.1| MutS [Enterococcus faecium C68]
gi|35367191|gb|AAN85564.1| MutS [Enterococcus faecium]
gi|260075541|gb|EEW63847.1| MutS [Enterococcus faecium C68]
Length = 881
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + LL G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLLAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|430826358|ref|ZP_19444543.1| DNA mismatch repair protein mutS [Enterococcus faecium E0164]
gi|430839373|ref|ZP_19457314.1| DNA mismatch repair protein mutS [Enterococcus faecium E0688]
gi|430858934|ref|ZP_19476552.1| DNA mismatch repair protein mutS [Enterococcus faecium E1552]
gi|430892898|ref|ZP_19484519.1| DNA mismatch repair protein mutS [Enterococcus faecium E1575]
gi|431764986|ref|ZP_19553511.1| DNA mismatch repair protein mutS [Enterococcus faecium E4215]
gi|35367182|gb|AAN85562.1| MutS [Enterococcus faecium]
gi|430445147|gb|ELA54926.1| DNA mismatch repair protein mutS [Enterococcus faecium E0164]
gi|430490831|gb|ELA67327.1| DNA mismatch repair protein mutS [Enterococcus faecium E0688]
gi|430544453|gb|ELA84482.1| DNA mismatch repair protein mutS [Enterococcus faecium E1552]
gi|430555364|gb|ELA94902.1| DNA mismatch repair protein mutS [Enterococcus faecium E1575]
gi|430629626|gb|ELB66021.1| DNA mismatch repair protein mutS [Enterococcus faecium E4215]
Length = 881
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + LL G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLLAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|302039393|ref|YP_003799715.1| DNA mismatch repair protein MutS [Candidatus Nitrospira defluvii]
gi|300607457|emb|CBK43790.1| DNA mismatch repair protein MutS [Candidatus Nitrospira defluvii]
Length = 882
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 138/301 (45%), Gaps = 8/301 (2%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL 615
V E F T +++E ER A K A L L + L T+ L S L I +
Sbjct: 518 VNAERFMTTELKELEERVTGADTKLTALEQALFEQLRTRLATETARLQEISRRLAILDVV 577
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEG---SAVHNTVDMQSLFL 672
A ++V P + E DG + L+ D + G + H + L +
Sbjct: 578 AALAETAALNRYVRPTVD--EGDGLHILQGRHPVVERLDLSGGFIPNDTHLDLATSRLHI 635
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
LTGPN GKS+ LR + +L+ G VPA A I D I + + D+ A G+S+F
Sbjct: 636 LTGPNMAGKSTYLRQVALITLMAQMGSFVPATEARIGLTDRIFTRVGASDNLAGGQSTFM 695
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVSTHL 789
VEM+E I+ T RSL+L+DEI RGT T G IA +I E + + +G + +TH
Sbjct: 696 VEMTESAHILNCATPRSLILLDEIGRGTSTYDGLSIAWAIAEYIQDPQRLGARTLFATHY 755
Query: 790 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
H + L + + + DG+ + K++ G S A+ G+P+ +I RA
Sbjct: 756 HEMTQLESLREGITNYCVAVQERDGRVLFLRKIIRGGADRSYGIHVAQLAGLPDQVIHRA 815
Query: 850 E 850
+
Sbjct: 816 K 816
>gi|293570767|ref|ZP_06681817.1| DNA mismatch repair protein MutS [Enterococcus faecium E980]
gi|431081632|ref|ZP_19495722.1| DNA mismatch repair protein mutS [Enterococcus faecium E1604]
gi|431118176|ref|ZP_19498130.1| DNA mismatch repair protein mutS [Enterococcus faecium E1613]
gi|431738993|ref|ZP_19527933.1| DNA mismatch repair protein mutS [Enterococcus faecium E1972]
gi|431740727|ref|ZP_19529638.1| DNA mismatch repair protein mutS [Enterococcus faecium E2039]
gi|291609239|gb|EFF38511.1| DNA mismatch repair protein MutS [Enterococcus faecium E980]
gi|430565564|gb|ELB04710.1| DNA mismatch repair protein mutS [Enterococcus faecium E1604]
gi|430568133|gb|ELB07190.1| DNA mismatch repair protein mutS [Enterococcus faecium E1613]
gi|430596536|gb|ELB34360.1| DNA mismatch repair protein mutS [Enterococcus faecium E1972]
gi|430602810|gb|ELB40360.1| DNA mismatch repair protein mutS [Enterococcus faecium E2039]
Length = 881
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 143/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P L + D L +G P + N+V+M + + L
Sbjct: 552 ATISE--RYQYVRPELVN---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHG 791
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P +++RA D
Sbjct: 727 LTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|374338959|ref|YP_005095679.1| DNA mismatch repair protein MutS [Streptococcus macedonicus ACA-DC
198]
gi|372285079|emb|CCF03413.1| DNA mismatch repair protein MutS [Streptococcus macedonicus ACA-DC
198]
Length = 856
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 144/300 (48%), Gaps = 26/300 (8%)
Query: 565 KVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRR 624
K+E + HE A + + +RG T++ L A + + ++L A V+E
Sbjct: 495 KIEGEMLEAHEQSASLEYDIFMRVRGQVERYITRLQDLAKAISTVDVLQSL-AVVAENNH 553
Query: 625 RKWVFPALKD---IELDG---ANCLKMNGLSPY-----WFDAAEGSAVHNTVDMQSLFLL 673
+V P D I+++ A K+ G Y FDA +++Q L+
Sbjct: 554 --YVRPTFNDNHEIKIEKGRHAVVEKVMGTQEYIPNTITFDA--------DINIQ---LI 600
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R + ++ G V AES ++P FDAI + + D G+S+F V
Sbjct: 601 TGPNMSGKSTYMRQLALTVIMAQMGSYVAAESVNLPVFDAIFTRIGAADDLISGQSTFMV 660
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGI 792
EM E + ++S+SL+L DE+ RGT T G +A SIIE + N IG + +TH H +
Sbjct: 661 EMMEANQAIKRSSSQSLILFDELGRGTATYDGMALAQSIIEYIHNHIGAKTMFATHYHEL 720
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
L + + + T +G K+ +G +S AK G+PE ++QRA+ +
Sbjct: 721 TDLSTSLTHLVNVHVATLEKNGDVTFLHKIAEGPADKSYGIHVAKIAGLPEELLQRADSI 780
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQQYIDVLVELGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|320527174|ref|ZP_08028361.1| DNA mismatch repair protein MutS [Solobacterium moorei F0204]
gi|320132502|gb|EFW25045.1| DNA mismatch repair protein MutS [Solobacterium moorei F0204]
Length = 839
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Query: 646 NGLSPYWFDAAEG-SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV 701
NG P D + V N+ DM Q + L+TGPN GGKS+ +R ++ G V
Sbjct: 568 NGKHPILDDMMKNPKYVANSTDMHKDQDILLITGPNMGGKSTYMRQTALIVIMAQMGCFV 627
Query: 702 PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTE 761
PA+S +P FD I + + D G+S+F VEMSE + TS SL+L DEI RGT
Sbjct: 628 PAKSCIMPIFDKIFTRIGASDDILSGQSTFMVEMSEANLALQEATSSSLILFDEIGRGTS 687
Query: 762 TAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTW 820
T G +A ++IE + I + STH H + + + N + + + + +
Sbjct: 688 TYDGMALAQAMIEYIATCIHAKTMFSTHYHELTVISDNLPNVKNMHVVVKENNDEVTFLY 747
Query: 821 KLVDGICRESLAFETAKREGVPETIIQRAEDL 852
K+ DG S A+ G+P+ ++ RA+DL
Sbjct: 748 KMADGPAGHSYGINVARLAGLPDAVLNRAKDL 779
>gi|262373025|ref|ZP_06066304.1| DNA mismatch repair protein MutS [Acinetobacter junii SH205]
gi|262313050|gb|EEY94135.1| DNA mismatch repair protein MutS [Acinetobacter junii SH205]
Length = 885
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 131/281 (46%), Gaps = 13/281 (4%)
Query: 575 EAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD 634
E+ A A+ K+L L EL+ I L S + L + R W P
Sbjct: 530 ESRALAREKLL--FESLLDELRQNIAQLQMMSAAIAHIDVLANFAYQARLNNWARP---- 583
Query: 635 IELDGANCLKMN-GLSPYW--FDAAEGSAVHNTVDMQS-LFLLTGPNGGGKSSLLRSICA 690
E C+K+ G P + A + +D Q + ++TGPN GGKS+ +R
Sbjct: 584 -EYTPETCIKIQAGRHPVVESLNKAPFTPNDTFLDHQHRMAIITGPNMGGKSTFMRQTAL 642
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
SLL CG VPA+SA + D I + S D + GKS+F VEM+E I+ TS+SL
Sbjct: 643 ISLLAYCGCFVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSL 702
Query: 751 VLIDEICRGTETAKGTCIA-GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809
VL+DE+ RGT T G +A +++ I CL + +TH + L + Y
Sbjct: 703 VLMDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELTELGSEAGIDNYHVTAQ 762
Query: 810 EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
E L+G + K+ G +S + AK G+P +I+ A+
Sbjct: 763 E-LNGNLILLHKVQHGPASQSHGLQVAKLAGIPANVIKDAQ 802
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L+ K ++P +L R+GDFYE DA + + G L G E IP AG P +
Sbjct: 19 QYLKVKMEYPHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKTNGEPIPMAGVPYHS 78
Query: 105 LRQTLDDLTRNGYSVCIVEEV-----QGPTQAR 132
L L ++G +V I E+V +GP + +
Sbjct: 79 AEGYLARLVKSGRTVAICEQVGEVTGKGPVERK 111
>gi|150003763|ref|YP_001298507.1| DNA mismatch repair protein MutS [Bacteroides vulgatus ATCC 8482]
gi|319640015|ref|ZP_07994742.1| DNA mismatch repair protein mutS [Bacteroides sp. 3_1_40A]
gi|423313096|ref|ZP_17291032.1| DNA mismatch repair protein mutS [Bacteroides vulgatus CL09T03C04]
gi|189030698|sp|A6KZM1.1|MUTS_BACV8 RecName: Full=DNA mismatch repair protein MutS
gi|149932187|gb|ABR38885.1| putative DNA mismatch repair protein MutS [Bacteroides vulgatus
ATCC 8482]
gi|317388293|gb|EFV69145.1| DNA mismatch repair protein mutS [Bacteroides sp. 3_1_40A]
gi|392686310|gb|EIY79616.1| DNA mismatch repair protein mutS [Bacteroides vulgatus CL09T03C04]
Length = 870
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 608 ETQQIIIITGPNMAGKSALLRQTALITLLAQMGSFVPAESARIGMVDKIFTRVGASDNIS 667
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E +I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 668 VGESTFMVEMNEAANILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHPKAKAR 727
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 728 TLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 787
Query: 843 ETIIQRAEDL 852
++I++RA D+
Sbjct: 788 KSIVKRANDI 797
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ + K+K P ++L R GDFYE DA + E G L + +S+ AG P
Sbjct: 13 QFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAGFPFHA 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 73 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 114
>gi|294777418|ref|ZP_06742869.1| DNA mismatch repair protein MutS [Bacteroides vulgatus PC510]
gi|294448486|gb|EFG17035.1| DNA mismatch repair protein MutS [Bacteroides vulgatus PC510]
Length = 883
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 621 ETQQIIIITGPNMAGKSALLRQTALITLLAQMGSFVPAESARIGMVDKIFTRVGASDNIS 680
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E +I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 681 VGESTFMVEMNEAANILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHPKAKAR 740
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 741 TLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 800
Query: 843 ETIIQRAEDL 852
++I++RA D+
Sbjct: 801 KSIVKRANDI 810
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ + K+K P ++L R GDFYE DA + E G L + +S+ AG P
Sbjct: 26 QFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAGFPFHA 85
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 86 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 127
>gi|265752670|ref|ZP_06088239.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_33FAA]
gi|345514265|ref|ZP_08793778.1| DNA mismatch repair protein mutS [Bacteroides dorei 5_1_36/D4]
gi|229437245|gb|EEO47322.1| DNA mismatch repair protein mutS [Bacteroides dorei 5_1_36/D4]
gi|263235856|gb|EEZ21351.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_33FAA]
Length = 870
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 608 ETQQIIIITGPNMAGKSALLRQTALITLLAQMGSFVPAESARIGMVDKIFTRVGASDNIS 667
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E +I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 668 VGESTFMVEMNEAANILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHPKAKAR 727
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 728 TLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 787
Query: 843 ETIIQRAEDL 852
++I++RA D+
Sbjct: 788 KSIVKRANDI 797
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ + K+K P ++L R GDFYE DA + E G L + +S+ AG P
Sbjct: 13 QFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAGFPFHA 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 73 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 114
>gi|242011381|ref|XP_002426429.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510534|gb|EEB13691.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 1265
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 100/193 (51%), Gaps = 7/193 (3%)
Query: 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 723
T +L LLTGPN GGKS+L+R + +++ GL VPAE+ + D I + + D
Sbjct: 1032 TNSFSNLVLLTGPNMGGKSTLMRQLGLITIMAQMGLKVPAETCKLIPIDRIFTRIGAKDD 1091
Query: 724 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 783
G+S+F VE+SE I+ T SL LIDE+ RGT T GT IA S+++ L + GC
Sbjct: 1092 ILAGESTFYVELSEASMILNNATQFSLALIDELGRGTSTYDGTAIAYSVVKELSHRGCRT 1151
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT-------WKLVDGICRESLAFETA 836
+ STH H + + + M + P+ +K VDG C +S F A
Sbjct: 1152 LFSTHYHILIDDFKESDSVTLGHMACMVETDEEDPSEETVTFLYKFVDGACPKSYGFNAA 1211
Query: 837 KREGVPETIIQRA 849
K G+P II+ A
Sbjct: 1212 KLAGIPINIIKAA 1224
>gi|423389970|ref|ZP_17367196.1| DNA mismatch repair protein mutS [Bacillus cereus BAG1X1-3]
gi|401640886|gb|EJS58612.1| DNA mismatch repair protein mutS [Bacillus cereus BAG1X1-3]
Length = 890
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 104/188 (55%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA+ A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPAKEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|336418556|ref|ZP_08598831.1| DNA mismatch repair protein MutS [Fusobacterium sp. 11_3_2]
gi|336164550|gb|EGN67454.1| DNA mismatch repair protein MutS [Fusobacterium sp. 11_3_2]
Length = 876
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 29/297 (9%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 510 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 566
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTV---DMQSLFLLTG 675
+ +V P E+ + L++ G + A G+ V N + D +L +LTG
Sbjct: 567 --TKNSYVKP-----EISEEDILEIKGGRHPIVETLIASGTYVKNDIVLNDKNNLIILTG 619
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +EM
Sbjct: 620 PNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEM 679
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
+E+ SI+ T++S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 680 TEVASILNNATNKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTE 739
Query: 795 LPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 740 LEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 794
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQ 107
+ K ++P E+L+ R+GDFYE DA I + G L + + +P AG P ++
Sbjct: 13 KIKEEYPNEILMYRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYS+ I ++V+ P A R ++ PG+
Sbjct: 73 YIAKLVEKGYSIAICDQVEDPKSATGIVKREVTRVITPGT 112
>gi|229086318|ref|ZP_04218496.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-44]
gi|228697013|gb|EEL49820.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-44]
Length = 886
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 141/290 (48%), Gaps = 27/290 (9%)
Query: 579 KAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--------FAHVSEGRRRKWVFP 630
+A+ K+++L L + L+ ++ VF L + K + FA VSE ++V P
Sbjct: 501 EAEEKIVQLEYDLFTALREEVK--VFIPKLQHLAKVISELDVLQSFATVSE--EEQFVKP 556
Query: 631 ALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDM---QSLFLLTGPNGGGKSSLLR 686
L D +G P G V N M +FL+TGPN GKS+ +R
Sbjct: 557 VLTD----KREIFIKDGRHPVVEKVLNGKLYVPNDCVMPENMDMFLITGPNMSGKSTYMR 612
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ +++ G VPA A +P FD I + + D G+S+F VEM E ++ + +
Sbjct: 613 QLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANAS 672
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP---LKIKNA 802
RSL+L DEI RGT T G +A +IIE + D IG + STH H + L ++KN
Sbjct: 673 ERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLEQLKNV 732
Query: 803 AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
A+ +G+ V K+ DG +S A+ +P+++I RA+++
Sbjct: 733 HVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEV 779
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|418630382|ref|ZP_13192864.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU128]
gi|420174935|ref|ZP_14681381.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM061]
gi|420191656|ref|ZP_14697567.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM023]
gi|374837923|gb|EHS01481.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
VCU128]
gi|394244468|gb|EJD89810.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM061]
gi|394265807|gb|EJE10454.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
NIHLM023]
Length = 873
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 121/271 (44%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL + + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLNCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + GQ ++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHQDTDNQRTVPSYNDFGQIEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIVTPGT--VMDQSGMD 120
>gi|423581980|ref|ZP_17558091.1| DNA mismatch repair protein mutS [Bacillus cereus VD014]
gi|401212859|gb|EJR19600.1| DNA mismatch repair protein mutS [Bacillus cereus VD014]
Length = 890
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 8/222 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTIMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQPPPSIIGASCVYVMLRP 885
+I RA+++ G ++I R + + V V P
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRTEVKVQEVTPDAVVVKEEP 819
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|254303689|ref|ZP_04971047.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|22087665|gb|AAM90996.1|AF525506_1 DNA mismatch repair protein [Fusobacterium nucleatum]
gi|148323881|gb|EDK89131.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 877
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 149/296 (50%), Gaps = 27/296 (9%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 510 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 566
Query: 621 EGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLT 674
+ +V P + + +E+ G + L P G+ V N + D +L +LT
Sbjct: 567 --TKNSYVKPEMNEGEILEIKGGRHPIVETLIP------SGTYVKNDIILDDKNNLIILT 618
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +E
Sbjct: 619 GPNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLE 678
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF 793
M+E+ SI+ + T +S V++DEI RGT T G IA +I E + N IG I +TH H +
Sbjct: 679 MTEVASILNSATKKSFVVLDEIGRGTSTYDGISIATAITEYIHNVIGAKTIFATHYHELT 738
Query: 794 SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A + + V ++V G +S E A+ GVP+ ++ R+
Sbjct: 739 ELEKELERAINFRVEVKEDSKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 794
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN--PFGGLRPESIPKAGCPVVNLRQ 107
+ K ++ E+L+ R+GDFYE DA I + GL + + +P AG P ++
Sbjct: 13 KIKEEYKNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYSV I ++V+ P A R ++ PG+
Sbjct: 73 YIARLVEKGYSVAICDQVEDPKSATGIVKREVTRVITPGT 112
>gi|49474920|ref|YP_032961.1| DNA mismatch repair protein MutS [Bartonella henselae str.
Houston-1]
gi|81696206|sp|Q6G542.1|MUTS_BARHE RecName: Full=DNA mismatch repair protein MutS
gi|49237725|emb|CAF26915.1| DNA mismatch repair protein mutS [Bartonella henselae str.
Houston-1]
Length = 914
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFA--SMLLVIGKALFAH 618
F+T ++ E R A A LE+ L E+ +++ + A S+ ++ AH
Sbjct: 540 FTTTELAELESRIAHAANHALTLELEIFDTLVHEITEQVDFIRKAAESLAVLDVSVALAH 599
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R + +L G + L+ P+ + + S N +++
Sbjct: 600 LAEEQGYCRPKIDQSLTFCITAGRHPVVEQALRKQAAEPFVANNCDLSLQENH-QYAAIW 658
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 659 LLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGVVDRLFSRVGASDDLARGRSTF 718
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ T SLV++DEI RGT T G IA + +E L + C I++TH H
Sbjct: 719 MMEMVETATILNHATQHSLVILDEIGRGTSTFDGLSIAWATVEYLHEVNHCRAILATHFH 778
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L K+ M + DG + ++ G S + AK G+P+ +I RA
Sbjct: 779 EMTALTEKLDRLHNVTMKVKNWDGDVIFLHEVTPGAADRSYGVQVAKLAGLPKAVITRAT 838
Query: 851 DL 852
D+
Sbjct: 839 DV 840
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNG 116
+L R+GDFYE DA + G L G E IP G PV L L G
Sbjct: 44 LLFYRMGDFYELFFNDAIEAAQVLGITLTTRGKHLGEDIPMCGVPVHTADDYLQKLISCG 103
Query: 117 YSVCIVEEVQGPTQARSRKSRFI 139
Y V + E+ + P +A+ R S+ I
Sbjct: 104 YRVAVCEQTEDPAEAKKRGSKSI 126
>gi|417940025|ref|ZP_12583313.1| DNA mismatch repair protein MutS [Streptococcus oralis SK313]
gi|343388906|gb|EGV01491.1| DNA mismatch repair protein MutS [Streptococcus oralis SK313]
Length = 844
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAES +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAITAVMAQLGSYVPAESTHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T +GQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLGSSLEHLVNVHVATLEQEGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDL 852
G+P ++ RA+ +
Sbjct: 767 AGLPAELLARADKI 780
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE I+A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|422857399|ref|ZP_16904049.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1057]
gi|327463450|gb|EGF09769.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1057]
Length = 849
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALENSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
++
Sbjct: 779 NI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|418329388|ref|ZP_12940456.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
14.1.R1.SE]
gi|365230423|gb|EHM71518.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
14.1.R1.SE]
Length = 873
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 121/271 (44%), Gaps = 13/271 (4%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++L+TGPN GKS+ +R + S++ G VP +SA++P FD I + + D GKS
Sbjct: 596 IYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKS 655
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E + +T T SL++ DEI RGT T G +A ++IE + + STH
Sbjct: 656 TFMVEMLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTH 715
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL + + G+ + K+ DG +S + AK +P +I R
Sbjct: 716 YHELTSLDQMLNCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDR 775
Query: 849 AEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKE 908
A+ V++ A EQ P + GQ ++ I H
Sbjct: 776 AQ----------VILNAFEQKPSYQLSHQDTDNQRTVPSYNDFGQIEEEQSVIETHTSNH 825
Query: 909 GMQSASFLYF--VVPGKSIACQIETLLINQL 937
+ A+F F + CQI L ++ +
Sbjct: 826 NYEQATFDLFDGYNQQSEVECQIRELNLSNM 856
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA--CILVEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS++ +L R+GDFYE DA V L + IP G P +
Sbjct: 10 QYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 157
++ L NGY V I E+++ P Q + R + PG+ V G+D
Sbjct: 70 ADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIITPGT--VMDQSGMD 120
>gi|19075844|ref|NP_588344.1| DNA mismatch repair protein [Schizosaccharomyces pombe 972h-]
gi|39931686|sp|O74502.1|MSH6_SCHPO RecName: Full=DNA mismatch repair protein msh6
gi|6644186|gb|AAF20943.1|AF207839_1 mismatch repair protein Msh6 [Schizosaccharomyces pombe]
gi|3581916|emb|CAA20855.1| MutS protein homolog [Schizosaccharomyces pombe]
Length = 1254
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 102/187 (54%), Gaps = 5/187 (2%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++ +LTGPN GKS+LLR +C A ++ G VPA+ ASI +I + + D +
Sbjct: 1018 NMIVLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSAR 1077
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VE+SE + I+ +SLV++DE+ RGT T G IA +++ L NIGCLG ST
Sbjct: 1078 STFMVELSETKKILDECGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFST 1137
Query: 788 HLHGI---FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H + F +++ A E + T +KL DGIC +S A G+PE
Sbjct: 1138 HYQSLCVDFMHHRQVRLMQMAAAVDEKIRRVTF-LYKLEDGICPKSYGMNVASMAGLPEK 1196
Query: 845 IIQRAED 851
+I AE+
Sbjct: 1197 VIDAAEE 1203
>gi|377809458|ref|YP_005004679.1| DNA mismatch repair protein MutS [Pediococcus claussenii ATCC
BAA-344]
gi|361056199|gb|AEV95003.1| DNA mismatch repair protein MutS [Pediococcus claussenii ATCC
BAA-344]
Length = 870
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/418 (27%), Positives = 178/418 (42%), Gaps = 42/418 (10%)
Query: 468 HIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEIL---YAR---EHEAV 521
H+ E+AE A L ED +I+ + AP+ G ++ Y + ++
Sbjct: 373 HVLEELAEPAFDAMLEHLDPVEDIADLINNSISEDAPISVTDGNLIKDGYNKTLDQYRDA 432
Query: 522 WFKGKKFRPTVWASTPGEEQIKQLK---------------PAVDS--KGRK------VGE 558
G+K+ + A+ IK LK +DS +GR
Sbjct: 433 MSNGRKWIADMQATERERTGIKNLKIGFNKVFGYYIEITRSNLDSVPEGRYERKQTLTNA 492
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E EA K+ +L + E++ I+ L + ++ L F
Sbjct: 493 ERFITPELKEKERIILEAEQKSTDLEYDLFSAIREEIKKSIDRLQELAKVISRLDVLQSF 552
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE + +V P + D + NG P S V N ++M + L
Sbjct: 553 AVISE--QYDFVKPTITD----QHDIYIKNGRHPVVEKVMGHQSYVPNDINMGKDTEILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + ++ G V AESA+IP FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVIMAQMGCFVAAESATIPIFDQIFTRIGAADDLISGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E + T SLVL DEI RGT T G +A SIIE + N+ + STH H
Sbjct: 667 VEMQEANRALQNGTQNSLVLFDEIGRGTATYDGMALAQSIIEYIHQNVHAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L + +G +G V K+ DG +S AK G+P +++RA
Sbjct: 727 LTDLDQTLDRLKNVHVGAVEQNGNLVFLHKMEDGPADKSYGIHVAKLAGMPNNLLKRA 784
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR--PESIPKAGCPVVN 104
+ + K ++P L R+GDFYE DA + L + + IP G P
Sbjct: 13 QYFEIKKQYPDAFLFYRIGDFYELFYDDAVKGSQILELTLTARSKNADDPIPMCGVPFHA 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P A+ R + PG+
Sbjct: 73 AQNYIDILVEQGYKVAICEQMEDPRTAKGMVKREVIQLVTPGT 115
>gi|289765895|ref|ZP_06525273.1| DNA mismatch repair protein mutS [Fusobacterium sp. D11]
gi|289717450|gb|EFD81462.1| DNA mismatch repair protein mutS [Fusobacterium sp. D11]
Length = 876
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 29/297 (9%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 510 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 566
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTV---DMQSLFLLTG 675
+ +V P E+ + L++ G + A G+ V N + D +L +LTG
Sbjct: 567 --TKNSYVKP-----EISEEDILEIKGGRHPIVETLIASGTYVKNDIVLDDKNNLIILTG 619
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +EM
Sbjct: 620 PNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEM 679
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
+E+ SI+ T++S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 680 TEVASILNNATNKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTE 739
Query: 795 LPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 740 LEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 794
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQ 107
+ K ++P E+L+ R+GDFYE DA I + G L + + +P AG P ++
Sbjct: 13 KIKEEYPNEILMYRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYS+ I ++V+ P A R ++ PG+
Sbjct: 73 YIAKLVEKGYSIAICDQVEDPKSATGIVKREVTRVITPGT 112
>gi|157692388|ref|YP_001486850.1| DNA mismatch repair protein MutS [Bacillus pumilus SAFR-032]
gi|167012381|sp|A8FDH3.1|MUTS_BACP2 RecName: Full=DNA mismatch repair protein MutS
gi|157681146|gb|ABV62290.1| DNA mismatch repair protein MutS1 [Bacillus pumilus SAFR-032]
Length = 858
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 119/240 (49%), Gaps = 12/240 (5%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDM---QSLF 671
FA VSE RR ++ P + E+D ++G P + V N M +
Sbjct: 544 FATVSEKRR--YIRPEFSEDEVDV-----IDGRHPVVEKVMDHQEYVPNDCHMGNGRQTL 596
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + S+L G VPA A++P FD I + + D G+S+F
Sbjct: 597 LITGPNMSGKSTYMRQMALISILAQIGCFVPASKATLPIFDQIFTRIGAADDLISGQSTF 656
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E ++ + T SL+L DEI RGT T G +A +IIE + D++G + STH H
Sbjct: 657 MVEMLEAKNAMVHATKNSLILFDEIGRGTSTYDGMALAQAIIEFVHDHVGAKTLFSTHYH 716
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ + E +G V ++ +G +S A+ +P+ II RA+
Sbjct: 717 ELTVLESQLSELKNVHVRAEEHEGTVVFLHQIKEGAADKSYGIHVAQLAELPDAIIDRAQ 776
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE DA +E + GG +IP G P
Sbjct: 10 QYLNIKAEYQDAFLFFRLGDFYEMFFDDAKEASQELEITLTSRDGG----TIPMCGVPYH 65
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V I E+V+ P A+ R + PG+
Sbjct: 66 SASAYIEQLISKGYKVAICEQVEDPKTAKGVVKREVVQLITPGT 109
>gi|423401404|ref|ZP_17378577.1| DNA mismatch repair protein mutS [Bacillus cereus BAG2X1-2]
gi|423477891|ref|ZP_17454606.1| DNA mismatch repair protein mutS [Bacillus cereus BAG6X1-1]
gi|401654394|gb|EJS71937.1| DNA mismatch repair protein mutS [Bacillus cereus BAG2X1-2]
gi|402428816|gb|EJV60908.1| DNA mismatch repair protein mutS [Bacillus cereus BAG6X1-1]
Length = 890
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 15/218 (6%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLGQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQ-------PPPSII 874
+I RA+++ G ++I R + P P+++
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRTEVKVQEVAPEPAVV 815
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|289578351|ref|YP_003476978.1| DNA mismatch repair protein MutS [Thermoanaerobacter italicus Ab9]
gi|289528064|gb|ADD02416.1| DNA mismatch repair protein MutS [Thermoanaerobacter italicus Ab9]
Length = 866
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 152/297 (51%), Gaps = 24/297 (8%)
Query: 570 LERYHEAGAKAKAKVLELLRGLSSELQTKINILV---------FASMLLVIGKALFAHVS 620
L+ EA A+ K++EL L +E++ KI + + A++ ++I FA V+
Sbjct: 509 LKEIEEAILGAEEKLIELEYQLFNEIREKIELQIVRIQDTAKYIATIDVLIS---FAEVA 565
Query: 621 EGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGP 676
E R + P + D ++ + + G P ++ S V N +++ + ++TGP
Sbjct: 566 ETNR--YTKPIV-----DYSDRIVIKEGRHPVIETISDESFVANDIEIGPENPIMIITGP 618
Query: 677 NGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 736
N GKS+ +R + L+ G VPA A I D I + + D G+S+F VEMS
Sbjct: 619 NMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMS 678
Query: 737 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSL 795
E+ +I+ + TS+SL+++DE+ RGT T G IA ++IE + + I + +TH H + L
Sbjct: 679 EVANILKSATSKSLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKL 738
Query: 796 PLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
K+K + E + + K+V G +S + +K G+P +I++RA+++
Sbjct: 739 EGKMKGVRNYNVSVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEI 795
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+ +L R+GDFYE DA I +E A G E P AG P
Sbjct: 9 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTE-ERAPMAGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P +A+ R + PG+
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKGLVKRDVVRIYTPGT 111
>gi|160884834|ref|ZP_02065837.1| hypothetical protein BACOVA_02824 [Bacteroides ovatus ATCC 8483]
gi|156109869|gb|EDO11614.1| DNA mismatch repair protein MutS [Bacteroides ovatus ATCC 8483]
Length = 898
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 635 DTQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNIS 694
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 695 VGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKAR 754
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 755 TLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 814
Query: 843 ETIIQRAEDL 852
++I++RA ++
Sbjct: 815 KSIVKRANEI 824
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+K P V+L R GDFYE DA + E G L + ++I AG P
Sbjct: 40 QFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAGFPHHA 99
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 100 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 141
>gi|260494138|ref|ZP_05814269.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_33]
gi|260198284|gb|EEW95800.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_33]
Length = 881
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 29/297 (9%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 515 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 571
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTV---DMQSLFLLTG 675
+ +V P E+ + L++ G + A G+ V N + D +L +LTG
Sbjct: 572 --TKNSYVKP-----EISEEDILEIKGGRHPIVETLIASGTYVKNDIVLNDKNNLIILTG 624
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +EM
Sbjct: 625 PNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEM 684
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
+E+ SI+ T++S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 685 TEVASILNNATNKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTE 744
Query: 795 LPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 745 LEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 799
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQ 107
+ K ++P E+L+ R+GDFYE DA I + G L + + +P AG P ++
Sbjct: 18 KIKEEYPNEILMYRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 77
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYS+ I ++V+ P A R ++ PG+
Sbjct: 78 YIAKLVEKGYSIAICDQVEDPKSATGIVKREVTRVITPGT 117
>gi|320547650|ref|ZP_08041935.1| DNA mismatch repair protein HexA [Streptococcus equinus ATCC 9812]
gi|320447725|gb|EFW88483.1| DNA mismatch repair protein HexA [Streptococcus equinus ATCC 9812]
Length = 856
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G V AES S+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLALTVIMAQMGSYVAAESVSLPVFDAIFTRIGAADDLISGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + + +SL+L DE+ RGT T G +A SIIE + D+IG + +TH H
Sbjct: 659 MVEMMEANQAIKRASDQSLILFDELGRGTATYDGMALAQSIIEYIHDHIGAKTMFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L + + + T +G K+ +G +S AK G+PE ++QRA+
Sbjct: 719 ELTALSTTLTHLVNVHVATLERNGDVTFLHKIAEGPADKSYGIHVAKIAGLPEDLLQRAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAENPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P +A R + PG+
Sbjct: 72 AQQYIDVLVEMGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|401682709|ref|ZP_10814599.1| DNA mismatch repair protein MutS [Streptococcus sp. AS14]
gi|400183949|gb|EJO18196.1| DNA mismatch repair protein MutS [Streptococcus sp. AS14]
Length = 849
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTTLEDSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
++
Sbjct: 779 NI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|422847755|ref|ZP_16894438.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK72]
gi|325686753|gb|EGD28779.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK72]
Length = 849
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALEESLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
++
Sbjct: 779 NI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|297544629|ref|YP_003676931.1| DNA mismatch repair protein MutS [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842404|gb|ADH60920.1| DNA mismatch repair protein MutS [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 866
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 152/297 (51%), Gaps = 24/297 (8%)
Query: 570 LERYHEAGAKAKAKVLELLRGLSSELQTKINILV---------FASMLLVIGKALFAHVS 620
L+ EA A+ K++EL L +E++ KI + + A++ ++I FA V+
Sbjct: 509 LKEIEEAILGAEEKLIELEYQLFNEIREKIELQIVRIQDTAKYIATIDVLIS---FAEVA 565
Query: 621 EGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGP 676
E R + P + D ++ + + G P ++ S V N +++ + ++TGP
Sbjct: 566 ETNR--YTKPIV-----DYSDRIVIKEGRHPVIETISDESFVANDIEIGPENPIMIITGP 618
Query: 677 NGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 736
N GKS+ +R + L+ G VPA A I D I + + D G+S+F VEMS
Sbjct: 619 NMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMS 678
Query: 737 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSL 795
E+ +I+ + TS+SL+++DE+ RGT T G IA ++IE + + I + +TH H + L
Sbjct: 679 EVANILKSATSKSLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKL 738
Query: 796 PLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
K+K + E + + K+V G +S + +K G+P +I++RA+++
Sbjct: 739 EGKMKGVRNYNVSVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEI 795
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+ +L R+GDFYE DA I +E A G E P AG P
Sbjct: 9 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTE-ERAPMAGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P +A+ R + PG+
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKGLVKRDVVRIYTPGT 111
>gi|423418322|ref|ZP_17395411.1| DNA mismatch repair protein mutS [Bacillus cereus BAG3X2-1]
gi|401106595|gb|EJQ14556.1| DNA mismatch repair protein mutS [Bacillus cereus BAG3X2-1]
Length = 890
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 15/218 (6%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLGQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQ-------PPPSII 874
+I RA+++ G ++I R + P P+++
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRTEVKVQEVAPEPAVV 815
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|347969433|ref|XP_312887.5| AGAP003190-PA [Anopheles gambiae str. PEST]
gi|333468522|gb|EAA08481.5| AGAP003190-PA [Anopheles gambiae str. PEST]
Length = 1290
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 103/192 (53%), Gaps = 8/192 (4%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+L LLTGPN GGKS+L+R + ++L G +PAE+ + D I + + D G
Sbjct: 1061 NLVLLTGPNMGGKSTLMRQVGLLAVLSQIGSRLPAEACRMTLIDRIFTRLGASDDIMAGH 1120
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788
S+F VE++E +I+ T+ SLVL+DE+ RGT T GT +AG+++ L ++ C + STH
Sbjct: 1121 STFLVELNETSAILKHATADSLVLLDELGRGTATYDGTAVAGAVVHFLADLKCRTMFSTH 1180
Query: 789 LHGIFSLPLKIKNAAYKAMG----TEYLDGQTVPT----WKLVDGICRESLAFETAKREG 840
H + + A M E D T T ++ DG C +S F AK G
Sbjct: 1181 YHNLVDSFHEDPRIALGHMACMVENEEGDDPTQETVTFLYRYTDGACPKSYGFNAAKLAG 1240
Query: 841 VPETIIQRAEDL 852
+P II+RA +L
Sbjct: 1241 MPTAIIKRAYEL 1252
>gi|326389401|ref|ZP_08210968.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus JW
200]
gi|325994406|gb|EGD52831.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus JW
200]
Length = 867
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 149/287 (51%), Gaps = 24/287 (8%)
Query: 580 AKAKVLELLRGLSSELQTKINILV---------FASMLLVIGKALFAHVSEGRRRKWVFP 630
A+ K++EL L +E++ K+ + + A++ ++I FA V+E R ++ P
Sbjct: 519 AEEKLIELEYQLFNEIREKVELQIVRIQNTAKYIATIDVLIS---FAEVAETNR--YIKP 573
Query: 631 ALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLR 686
+ D ++ + + G P ++ S V N +D+ + ++TGPN GKS+ +R
Sbjct: 574 IV-----DYSDRIVIKEGRHPVIETISDESFVANDIDIGPENPIMIITGPNMAGKSTYMR 628
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ L+ G VPA A I D I + + D G+S+F VEMSE+ +I+ + T
Sbjct: 629 QVALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSAT 688
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
S+SL+++DE+ RGT T G IA ++IE + + I + +TH H + L K++
Sbjct: 689 SKSLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMRGVRNY 748
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ E + + K+V G +S + +K G+P +I++RA+++
Sbjct: 749 NVSVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEI 795
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+ +L R+GDFYE DA I +E A G E P AG P
Sbjct: 9 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTE-ERAPMAGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P +A+ R + PG+
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKGLVKRDVVRIYTPGT 111
>gi|296188728|ref|ZP_06857115.1| DNA mismatch repair protein MutS [Clostridium carboxidivorans P7]
gi|296046655|gb|EFG86102.1| DNA mismatch repair protein MutS [Clostridium carboxidivorans P7]
Length = 903
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 4/198 (2%)
Query: 658 GSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V NT D Q L ++TGPN GKS+ +R + L+ G VPA+ A I D I
Sbjct: 600 NDTVINTSDEQ-LLIITGPNMAGKSTYMRQVALIVLMAQIGSFVPAKKAVISVCDKIFTR 658
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL- 776
+ + D A GKS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA S+IE +
Sbjct: 659 IGASDDLAAGKSTFMVEMWEVSNILKNATNKSLILLDEVGRGTSTYDGLSIAWSVIEYIC 718
Query: 777 --DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ C + +TH H + L I+ ++ + + V K++ G +S E
Sbjct: 719 SSKKLKCKTLFATHYHELTKLESIIEGVKNYSVSVKEIGSDIVFLRKIIRGGADQSYGIE 778
Query: 835 TAKREGVPETIIQRAEDL 852
AK G+P+ +I+RA+++
Sbjct: 779 VAKLAGLPDKVIERAKEI 796
>gi|237722019|ref|ZP_04552500.1| DNA mismatch repair protein mutS [Bacteroides sp. 2_2_4]
gi|298482523|ref|ZP_07000708.1| DNA mismatch repair protein MutS [Bacteroides sp. D22]
gi|229448888|gb|EEO54679.1| DNA mismatch repair protein mutS [Bacteroides sp. 2_2_4]
gi|298271230|gb|EFI12806.1| DNA mismatch repair protein MutS [Bacteroides sp. D22]
Length = 872
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 609 DTQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNIS 668
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 669 VGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKAR 728
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 729 TLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 788
Query: 843 ETIIQRAEDL 852
++I++RA ++
Sbjct: 789 KSIVKRANEI 798
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+K P V+L R GDFYE DA + E G L + ++I AG P
Sbjct: 14 QFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAGFPHHA 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 74 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 115
>gi|386857613|ref|YP_006261790.1| DNA mismatch repair protein MutS [Deinococcus gobiensis I-0]
gi|380001142|gb|AFD26332.1| DNA mismatch repair protein MutS [Deinococcus gobiensis I-0]
Length = 836
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 7/227 (3%)
Query: 627 WVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSS 683
WV P + G + P A G V N ++ + + LLTGPN GKS+
Sbjct: 565 WVRPVTRP---GGEDARLTQARHPVVEGATGGRYVPNDAELGRGRHVLLLTGPNMAGKST 621
Query: 684 LLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT 743
LR++ +LL G VPA A +P +DA+ + + D A G+S+F VEMSE+ I+
Sbjct: 622 YLRTVAICALLHQIGSFVPAAGAELPIYDAVHTRIGASDDLAGGRSTFMVEMSELAGILH 681
Query: 744 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAA 803
T+RSLV++DE+ RGT T G IA + +E L G + +TH + L
Sbjct: 682 GATARSLVILDEVGRGTSTLDGLAIAQAALEHLHATGAHTLFATHYFELTRLEGDHPGLV 741
Query: 804 YKAMGTEYLDGQTVPTW-KLVDGICRESLAFETAKREGVPETIIQRA 849
+ E +GQ + + ++V G R+S E A+ G+P + RA
Sbjct: 742 NLHVAAEEDEGQGLTFYHQVVPGAARQSYGVEVARLAGLPAPVTARA 788
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN-PFGGLRPESIPKAGCPVVNLRQT 108
+ ++ P +LL +VGDFYE G DA G+ R S P AG P+ L Q
Sbjct: 22 EVAAQLPHAILLFQVGDFYETFGEDAERAARLLGIALTHKSSRDFSTPMAGVPLRALDQN 81
Query: 109 LDDLTRNGYSVCIVEEVQGP 128
++ L G V + ++V+ P
Sbjct: 82 VERLLAAGVCVAVADQVEEP 101
>gi|336403364|ref|ZP_08584080.1| DNA mismatch repair protein mutS [Bacteroides sp. 1_1_30]
gi|335946537|gb|EGN08342.1| DNA mismatch repair protein mutS [Bacteroides sp. 1_1_30]
Length = 872
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 609 DTQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNIS 668
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 669 VGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKAR 728
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 729 TLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 788
Query: 843 ETIIQRAEDL 852
++I++RA ++
Sbjct: 789 KSIVKRANEI 798
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+K P V+L R GDFYE DA + E G L + ++I AG P
Sbjct: 14 QFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAGFPHHA 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 74 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 115
>gi|309809651|ref|ZP_07703507.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN
2503V10-D]
gi|308170011|gb|EFO72048.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN
2503V10-D]
Length = 854
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 1/182 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
++FL+TGPN GKS+ +R + ++ G +PA+SA +P FD I + + D GK
Sbjct: 601 NIFLITGPNMSGKSTYMRQLALIIIMAQMGCFIPADSAVLPIFDKIFTRIGAGDDLISGK 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEMSE + T RSL+L DEI RGT T G +AG+II+ L D +G + +T
Sbjct: 661 STFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT 720
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L ++ + +G +G + K++ G S A+ G+P +++
Sbjct: 721 HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADRSYGIHVAQLAGLPTKVLR 780
Query: 848 RA 849
A
Sbjct: 781 EA 782
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA L+E L + IP AG P + +
Sbjct: 14 KIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELT-LTHRSNKSAKPIPMAGVPHLAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P +A+ R I PG+
Sbjct: 73 SYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGT 113
>gi|299145064|ref|ZP_07038132.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_23]
gi|336412923|ref|ZP_08593276.1| DNA mismatch repair protein mutS [Bacteroides ovatus 3_8_47FAA]
gi|423293750|ref|ZP_17271877.1| DNA mismatch repair protein mutS [Bacteroides ovatus CL03T12C18]
gi|298515555|gb|EFI39436.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_23]
gi|335942969|gb|EGN04811.1| DNA mismatch repair protein mutS [Bacteroides ovatus 3_8_47FAA]
gi|392677708|gb|EIY71124.1| DNA mismatch repair protein mutS [Bacteroides ovatus CL03T12C18]
Length = 872
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 609 DTQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNIS 668
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 669 VGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKAR 728
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 729 TLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 788
Query: 843 ETIIQRAEDL 852
++I++RA ++
Sbjct: 789 KSIVKRANEI 798
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+K P V+L R GDFYE DA + E G L + ++I AG P
Sbjct: 14 QFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAGFPHHA 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 74 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 115
>gi|262405774|ref|ZP_06082324.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_22]
gi|294648045|ref|ZP_06725590.1| DNA mismatch repair protein MutS [Bacteroides ovatus SD CC 2a]
gi|294810446|ref|ZP_06769102.1| DNA mismatch repair protein MutS [Bacteroides xylanisolvens SD CC
1b]
gi|345510287|ref|ZP_08789855.1| DNA mismatch repair protein mutS [Bacteroides sp. D1]
gi|229442989|gb|EEO48780.1| DNA mismatch repair protein mutS [Bacteroides sp. D1]
gi|262356649|gb|EEZ05739.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_22]
gi|292636552|gb|EFF55025.1| DNA mismatch repair protein MutS [Bacteroides ovatus SD CC 2a]
gi|294442333|gb|EFG11144.1| DNA mismatch repair protein MutS [Bacteroides xylanisolvens SD CC
1b]
Length = 872
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 609 DTQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNIS 668
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 669 VGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKAR 728
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 729 TLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 788
Query: 843 ETIIQRAEDL 852
++I++RA ++
Sbjct: 789 KSIVKRANEI 798
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+K P V+L R GDFYE DA + E G L + ++I AG P
Sbjct: 14 QFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAGFPHHA 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 74 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 115
>gi|427439507|ref|ZP_18924162.1| DNA mismatch repair protein MutS [Pediococcus lolii NGRI 0510Q]
gi|425788343|dbj|GAC44950.1| DNA mismatch repair protein MutS [Pediococcus lolii NGRI 0510Q]
Length = 894
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 1/181 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + ++ G VPAE A++P FD I + + D G+S
Sbjct: 604 ILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAEEATLPIFDQIFTRIGAADDLISGQS 663
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM E + T+ SL+L DEI RGT T G +A SIIE + N+ + STH
Sbjct: 664 TFMVEMQEANRALKDGTANSLILFDEIGRGTATYDGMALAQSIIEFIHQNVHAKTLFSTH 723
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L + +G DG V K+ DG +S AK G+P++++ R
Sbjct: 724 YHELTALDQTLTRLKNVHVGAVEQDGNLVFLHKMEDGPADKSYGIHVAKLAGMPDSLLAR 783
Query: 849 A 849
A
Sbjct: 784 A 784
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K+++P L R+GDFYE DA L+E L + IP G P
Sbjct: 13 QYMEIKNQYPDAFLFYRIGDFYELFYDDAIKGSQLLELT-LTARSKNADDPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P A+ R + PG+
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPKAAKGMVKREVIQLVTPGT 115
>gi|392940989|ref|ZP_10306633.1| DNA mismatch repair protein MutS [Thermoanaerobacter siderophilus
SR4]
gi|392292739|gb|EIW01183.1| DNA mismatch repair protein MutS [Thermoanaerobacter siderophilus
SR4]
Length = 867
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 149/287 (51%), Gaps = 24/287 (8%)
Query: 580 AKAKVLELLRGLSSELQTKINILV---------FASMLLVIGKALFAHVSEGRRRKWVFP 630
A+ K++EL L +E++ K+ + + A++ ++I FA V+E R ++ P
Sbjct: 519 AEEKLIELEYQLFNEIREKVELQIVRIQNTAKYIATIDVLIS---FAEVAETNR--YIKP 573
Query: 631 ALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLR 686
+ D ++ + + G P ++ S V N +D+ + ++TGPN GKS+ +R
Sbjct: 574 IV-----DYSDRIVIKEGRHPVIETISDESYVANDIDIGPENPIMIITGPNMAGKSTYMR 628
Query: 687 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746
+ L+ G VPA A I D I + + D G+S+F VEMSE+ +I+ + T
Sbjct: 629 QVALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSAT 688
Query: 747 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
S+SL+++DE+ RGT T G IA ++IE + + I + +TH H + L K++
Sbjct: 689 SKSLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMRGVRNY 748
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ E + + K+V G +S + +K G+P +I++RA+++
Sbjct: 749 NVSVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEI 795
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+ +L R+GDFYE DA I +E A G E P AG P
Sbjct: 9 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTE-ERAPMAGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P +A+ R + PG+
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKGLVKRDVVRIYTPGT 111
>gi|163848498|ref|YP_001636542.1| DNA mismatch repair protein MutS [Chloroflexus aurantiacus J-10-fl]
gi|222526432|ref|YP_002570903.1| DNA mismatch repair protein MutS [Chloroflexus sp. Y-400-fl]
gi|189030708|sp|A9WFZ9.1|MUTS_CHLAA RecName: Full=DNA mismatch repair protein MutS
gi|254766621|sp|B9LB04.1|MUTS_CHLSY RecName: Full=DNA mismatch repair protein MutS
gi|163669787|gb|ABY36153.1| DNA mismatch repair protein MutS [Chloroflexus aurantiacus J-10-fl]
gi|222450311|gb|ACM54577.1| DNA mismatch repair protein MutS [Chloroflexus sp. Y-400-fl]
Length = 966
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 661 VHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML 716
+ N +D+ + ++TGPN GKS+ LR + +L+ G VPA+ A I D I
Sbjct: 691 IGNDIDLDGEQAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFT 750
Query: 717 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776
+ + D A G+S+F VEM+E +++ +T RSL+++DE+ RGT T G IA +++E +
Sbjct: 751 RIGAQDDIATGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYI 810
Query: 777 DN---IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ +GC + +TH H + +L ++ M DG+ V +L G S
Sbjct: 811 HDHPRLGCRTLFATHYHELIALERELPRVRNYHMAAVERDGRVVFLHELRPGGADRSYGI 870
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +I+RA L
Sbjct: 871 HVAELAGIPPEVIRRASAL 889
>gi|423635458|ref|ZP_17611111.1| DNA mismatch repair protein mutS [Bacillus cereus VD156]
gi|401278209|gb|EJR84145.1| DNA mismatch repair protein mutS [Bacillus cereus VD156]
Length = 890
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 8/222 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQPPPSIIGASCVYVMLRP 885
+I RA+++ G ++I R + + V V P
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRTEVKVQEVTPDAVVVKEEP 819
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|197301744|ref|ZP_03166814.1| hypothetical protein RUMLAC_00470 [Ruminococcus lactaris ATCC
29176]
gi|197299184|gb|EDY33714.1| DNA mismatch repair protein MutS [Ruminococcus lactaris ATCC 29176]
Length = 877
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 104/184 (56%), Gaps = 3/184 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R +L+ G VPA+SA+I D I + + D A G+S+F
Sbjct: 611 IITGPNMAGKSTYMRQTALIALMAQVGCFVPAQSANIGLSDRIFTRVGASDDLASGQSTF 670
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTH 788
VEM+E+ +I+ TS+SL+++DEI RGT T G IA +++E + + LG + +TH
Sbjct: 671 MVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVVEYISDSKLLGAKTLFATH 730
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L KI+N + + V K+V G +S + AK GVP+ +I R
Sbjct: 731 YHELTELEGKIENVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDLVINR 790
Query: 849 AEDL 852
A+++
Sbjct: 791 AKEI 794
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGL--RPESIPKAGCPVVN 104
+ ++ KS++ +L R+GDFYE DA + G + E P G P
Sbjct: 4 QYMETKSQYQDCILFYRLGDFYEMFFEDALTASRELEITLTGKNCGQEERAPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L+ L GY V I E+V+ P QA+ R + PG+
Sbjct: 64 VEGYLNRLVAKGYKVAICEQVEDPKQAKGIVKREVVRIVTPGT 106
>gi|422879902|ref|ZP_16926367.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1059]
gi|422929748|ref|ZP_16962689.1| DNA mismatch repair protein HexA [Streptococcus sanguinis ATCC
29667]
gi|422932714|ref|ZP_16965645.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK340]
gi|332365313|gb|EGJ43076.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1059]
gi|339614341|gb|EGQ19043.1| DNA mismatch repair protein HexA [Streptococcus sanguinis ATCC
29667]
gi|339618465|gb|EGQ23063.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK340]
Length = 849
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPIFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALEESLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
++
Sbjct: 779 NI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|228922484|ref|ZP_04085786.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837198|gb|EEM82537.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 884
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 8/222 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQPPPSIIGASCVYVMLRP 885
+I RA+++ G ++I R + + V V P
Sbjct: 772 LIARAKEVLAQLEGQEEIIIPKRTEVKVQEVTPDAVVVKEEP 813
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|222084680|ref|YP_002543209.1| DNA mismatch repair protein MutS [Agrobacterium radiobacter K84]
gi|221722128|gb|ACM25284.1| DNA mismatch repair protein MutS [Agrobacterium radiobacter K84]
Length = 885
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 139/281 (49%), Gaps = 25/281 (8%)
Query: 575 EAGAKAKAKVLELLRGLS--SELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL 632
+AGA+A + V+++ GL+ +E Q +V AS + I V + RR+ P +
Sbjct: 554 KAGARALS-VIDVAAGLALLAEEQAYCRPVVDASRMFAIEGGRHPVVEQALRRQAGGPFV 612
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS 692
+ NC LSP D +G+ ++LLTGPN GGKS+ LR +
Sbjct: 613 AN------NC----DLSPTS-DGKDGA----------IWLLTGPNMGGKSTFLRQNALIA 651
Query: 693 LLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVL 752
+L G VPA SA I D + + + D A G+S+F VEM E +I+ T RSLV+
Sbjct: 652 ILAQMGSFVPATSAYIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVI 711
Query: 753 IDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 811
+DEI RGT T G IA + +E L C G+ +TH H + L K++ + M +
Sbjct: 712 LDEIGRGTATFDGLSIAWASVEHLHEANRCRGLFATHFHELTVLSEKLERLSNATMRVKE 771
Query: 812 LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
DG + ++ G S + A+ G+P +++ RA D+
Sbjct: 772 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPVSVVARARDV 812
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + IP G PV
Sbjct: 4 QYIEIKANNPGSLLFYRMGDFYELFFEDAVDASRALGITLTKRGQHMGQDIPMCGVPVHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L G+ V + E+++ P +A+ R
Sbjct: 64 ADDYLQKLISLGFRVAVCEQIEDPAEAKKR 93
>gi|336401154|ref|ZP_08581926.1| DNA mismatch repair protein mutS [Fusobacterium sp. 21_1A]
gi|336161511|gb|EGN64512.1| DNA mismatch repair protein mutS [Fusobacterium sp. 21_1A]
Length = 876
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 29/297 (9%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 510 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 566
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTV---DMQSLFLLTG 675
+ +V P E+ + L++ G + A G+ V N + D +L +LTG
Sbjct: 567 --TKNSYVKP-----EISEEDILEIKGGRHPIVETLIASGTYVKNDIVLDDKNNLIILTG 619
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +EM
Sbjct: 620 PNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEM 679
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
+E+ SI+ T++S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 680 TEVASILNNATNKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTE 739
Query: 795 LPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 740 LEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 794
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQ 107
+ K ++P E+L+ R+GDFYE DA I + G L + + +P AG P ++
Sbjct: 13 KIKEEYPNEILMYRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYS+ I ++V+ P A R ++ PG+
Sbjct: 73 YIAKLVEKGYSIAICDQVEDPKSATGIVKREVTRVITPGT 112
>gi|340756772|ref|ZP_08693377.1| DNA mismatch repair protein mutS [Fusobacterium varium ATCC 27725]
gi|251834039|gb|EES62602.1| DNA mismatch repair protein mutS [Fusobacterium varium ATCC 27725]
Length = 874
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 23/295 (7%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINIL---VFASMLLVIGKALFAHVSEG 622
L+ Y E AK K+ +L + ++ E+++ IL + L + L AH++
Sbjct: 505 LKEYEEKVLNAKDKIENLEYQLFKEVAYEIKSHKEILQDLAYKIAYLDVASDL-AHIA-- 561
Query: 623 RRRKWVFPAL---KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLTGP 676
+ +V P + KDIE+ + L P G V N + D + + +LTGP
Sbjct: 562 IKNSYVQPEIHAGKDIEIIAGRHPIVEKLIP------AGEYVKNNIVFDDNKEMIILTGP 615
Query: 677 NGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 736
N GKS+ ++ + ++ G VPA A I D I + + D G+S+F +EMS
Sbjct: 616 NMSGKSTYMKQVALIIIMAHMGSYVPANYAKIGLVDKIFTRIGASDDLLTGQSTFMLEMS 675
Query: 737 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSL 795
E+ +IV + T+RS +++DEI RGT T G IA +I E + + IG I +TH H + L
Sbjct: 676 EVANIVNSATNRSFIILDEIGRGTSTFDGISIATAITEYIHERIGAKTIFATHYHELTQL 735
Query: 796 PLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
K+ A + + D + V ++V G +S E A+ G+P+ I+ R++
Sbjct: 736 EDKLDRAENYRIEVKENDKEIVFLREIVKGGADKSYGIEVARLAGLPKEILDRSK 790
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP--ESIPKAGCPVVNLRQ 107
+ K + +L R+GDFYE DA I + GL R + +P AG P ++
Sbjct: 13 EIKEQNKDNLLFFRLGDFYEMFFDDAVIASKELGLTLTSRNREKGQDVPLAGVPYHSVSS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+V+ P + R + PG+
Sbjct: 73 YIAKLVNKGYKVAICEQVEDPKSVKGIVKREVVRVITPGT 112
>gi|67472182|ref|XP_651951.1| mutS family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468745|gb|EAL46564.1| mutS family protein [Entamoeba histolytica HM-1:IMSS]
Length = 934
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 7/209 (3%)
Query: 650 PYWFDAAEGSAVHNTV-----DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 704
PY + + SA+ + + D Q++ +LTGPN GGKS+LLR++C A ++ G+ E
Sbjct: 695 PYLTVSTKTSAIPSNIILGGTDPQTI-ILTGPNMGGKSTLLRTVCLAVIMAQMGMRCTGE 753
Query: 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAK 764
++ D I + + D G S+F VE+ E ++ T SLV++DE+ RGT T
Sbjct: 754 EITMSVVDHIFTRIGASDDILHGMSTFMVELDETAQMLHDATQNSLVVLDELGRGTSTHD 813
Query: 765 GTCIAGSIIE-TLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLV 823
G IA +++E T+ I L IVSTH H + + + MG + Q + + L+
Sbjct: 814 GLAIAHAVVEYTVSKIKPLMIVSTHYHQLCEEFEERGDVKLSHMGCTIQNNQIIFLYTLL 873
Query: 824 DGICRESLAFETAKREGVPETIIQRAEDL 852
DG C +S + A+ G+P I+ RAE++
Sbjct: 874 DGACPKSYGMKVAEMAGLPTKIVHRAENI 902
>gi|449137448|ref|ZP_21772774.1| DNA mismatch repair protein MutS [Rhodopirellula europaea 6C]
gi|448883900|gb|EMB14407.1| DNA mismatch repair protein MutS [Rhodopirellula europaea 6C]
Length = 891
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E + T +++E E+ A KA ++ L L + IL + + + + +
Sbjct: 515 ERYITPELKEYEEKVLAADEKASSREQMLFTLLRENTHKHLAILQEVANAIAMTDVVASL 574
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTVDMQS----LFL 672
+ WV P L D + L++ G D A+G V N + + L
Sbjct: 575 AEVAAQHHWVRPTLTD-----DSVLRIEGGRHPVLDVTMAQGEFVPNDCNQSPETGMILL 629
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + +LL G VPA SA I D I + + D + G+S+F
Sbjct: 630 ITGPNMAGKSTYIRQVALITLLAQTGSFVPATSAEIGIADRIFARVGASDELSRGQSTFM 689
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E I+ TSRSLV++DEI RGT T G +A +I E L + IG + +TH H
Sbjct: 690 VEMVETARILNTATSRSLVILDEIGRGTSTYDGLSLAWAITEHLHEQIGARTLFATHYHE 749
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ +L + A ++ + + V ++V G +S + A+ G+P + +RA+D
Sbjct: 750 LAALQETLPRVANLSVAVKEWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERAKD 809
Query: 852 L 852
+
Sbjct: 810 V 810
>gi|323350709|ref|ZP_08086370.1| DNA mismatch repair protein HexA [Streptococcus sanguinis VMC66]
gi|322123129|gb|EFX94820.1| DNA mismatch repair protein HexA [Streptococcus sanguinis VMC66]
Length = 849
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALENSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
++
Sbjct: 779 NI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|149174706|ref|ZP_01853331.1| DNA mismatch repair protein [Planctomyces maris DSM 8797]
gi|148846400|gb|EDL60738.1| DNA mismatch repair protein [Planctomyces maris DSM 8797]
Length = 866
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 1/203 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R +L+ G +PA A I D I + + D + G+S+F
Sbjct: 616 IITGPNMAGKSTYIRQAALLTLMAQIGSFIPASEARIGIADRIFARVGASDELSKGQSTF 675
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM+E I+ + + RSLV++DEI RGT T G +A S+ E L D I + +TH H
Sbjct: 676 MVEMTEAARILNSASERSLVILDEIGRGTSTYDGISLAWSMTEFLHDKIKARTLFATHYH 735
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L +K A+ + DG+ V K+V+G +S A+ G+P+ +IQRA
Sbjct: 736 ELTELTQTLKQASNWNVAVHEQDGEIVFLHKIVEGSANKSYGIHVARLAGIPDQVIQRAN 795
Query: 851 DLYIACGVNCVMIAAREQPPPSI 873
+ + + + PP I
Sbjct: 796 QILSTLEKDHIDETGQTTIPPRI 818
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 49 LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES--IPKAGCPVVNLR 106
L+ K + P +LL R+GDFYE DA I G+ + S IP AG P +L
Sbjct: 16 LEVKRQNPGTLLLFRMGDFYELFHEDAEIAARILGITLTSRDKTSSNPIPMAGFPHHSLD 75
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L GY I ++V+ P +A+ R ++ PG+
Sbjct: 76 NYLYKLIHAGYRASICDQVEDPKKAKGMVKREVTRVVTPGT 116
>gi|457094007|gb|EMG24562.1| DNA mismatch repair protein [Streptococcus parauberis KRS-02083]
Length = 851
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 1/180 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + S++ G V A+ A IP FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLALTSIMAQLGSYVAADLAEIPIFDAIFTRIGAADDLISGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A SIIE + D++G + +TH H
Sbjct: 659 MVEMMEANQAIKGASPRSLILFDELGRGTATYDGMALAQSIIEFIHDHVGAKTMFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++K+ + T +G+ K+ G +S AK G+P+ ++QRA+
Sbjct: 719 ELTDLSSRLKSLINVHVATLEENGEVTFLHKIAQGPADKSYGIHVAKIAGLPKELLQRAD 778
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + GL IP AG P +
Sbjct: 12 QYLDIKVNYPDAFLLFRMGDFYELFYDDAVKAAQILEIGLTSRNKNAENPIPMAGVPHHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P +A R + PG+
Sbjct: 72 AQQYIDVLIEQGYKVAIAEQMEDPKKAVGVVKREVVQVITPGT 114
>gi|375335777|ref|ZP_09777121.1| DNA mismatch repair protein MutS [Succinivibrionaceae bacterium
WG-1]
Length = 367
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 147/304 (48%), Gaps = 24/304 (7%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T +++E ++ A ++A A +L L ++L +N L+ + L + L +
Sbjct: 5 ERFITPELKEYEDKALTAQSQALALEKKLYEDLVAQLYKHLNPLIEIAKQLSLLDLLQSL 64
Query: 619 VSEGRRRKWVFPAL---KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFL 672
+ R +V P +E+ +NG P + + N + Q + L
Sbjct: 65 ATASIRYNYVRPTFTTEDKLEI-------INGRHPVIENVTSNPFIANNILLDKQQKMML 117
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GGKS+ +R +L+ G VPAE+A IP D+I + + D A G+S+F
Sbjct: 118 ITGPNMGGKSTYMRQTAIIALMAYMGSFVPAETAIIPNIDSIFTRIGASDDLASGRSTFM 177
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL--DNIGCLGIVSTHLH 790
VEM+E I+ T SLVL+DEI RGT T G +A +I E+L DN + +TH
Sbjct: 178 VEMTEAALILNNATKNSLVLMDEIGRGTSTKDGMALAWAIAESLAKDN-KSYSLFATHYF 236
Query: 791 GIFSLP---LKIKNAAYKAMGTEYLDGQT-VPTWKLVDGICRESLAFETAKREGVPETII 846
+ +LP IKN + A+ +G+ V + DG + S E A GVP+ II
Sbjct: 237 ELTNLPDYINSIKNVHFSALK----NGENIVFLHNIEDGPAQSSYGLEVASLAGVPKKII 292
Query: 847 QRAE 850
A+
Sbjct: 293 SNAK 296
>gi|145547527|ref|XP_001459445.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427270|emb|CAK92048.1| unnamed protein product [Paramecium tetraurelia]
Length = 1084
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 4/196 (2%)
Query: 661 VHNTV---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V NT+ D LLTGPN GKS+LLR I + +L G VPA S S+ FD I
Sbjct: 860 VPNTIKFSDSIDTLLLTGPNMSGKSTLLRLIGVSIILAQIGCAVPANSFSLTPFDRIFCR 919
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL- 776
+ + D +GKS+F +E+ E ++I+ +TS+S V+IDE+ RGT T G +A +++ L
Sbjct: 920 LGATDRLLEGKSTFFIELEETKTILDHSTSKSFVIIDELGRGTSTYDGIALASAVLRYLQ 979
Query: 777 DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
+ I L I +TH H + KN M Q + +KLV+G+ S + A
Sbjct: 980 EKIKPLTIFATHYHILLDEFELFKNINQCVMLYYQNKDQLIFRYKLVEGVAERSFSTNVA 1039
Query: 837 KREGVPETIIQRAEDL 852
+ G+P+ +IQ A+ +
Sbjct: 1040 LKAGIPQEVIQTAKQM 1055
>gi|255693596|ref|ZP_05417271.1| DNA mismatch repair protein MutS [Bacteroides finegoldii DSM 17565]
gi|260620662|gb|EEX43533.1| DNA mismatch repair protein MutS [Bacteroides finegoldii DSM 17565]
Length = 905
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ +
Sbjct: 642 DTQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNIS 701
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 702 VGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKAR 761
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 762 TLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 821
Query: 843 ETIIQRAEDL 852
++I++RA ++
Sbjct: 822 KSIVKRANEI 831
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 36 NGSLKEGTLNWE-------MLQF---KSKFPREVLLCRVGDFYEAIGIDACILVEYAG-- 83
N KE T+N E M QF K++ P V+L R GDFYE DA + E G
Sbjct: 26 NKEEKERTVNEEEIVLTPMMKQFLDLKAQHPDAVMLFRCGDFYETYSTDAIVASEILGIT 85
Query: 84 LNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHA 143
L + ++I AG P L L L R G V I ++++ P + R I+
Sbjct: 86 LTKRANGKGKTIEMAGFPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELV 145
Query: 144 HPG 146
PG
Sbjct: 146 TPG 148
>gi|85712118|ref|ZP_01043171.1| DNA mismatch repair protein [Idiomarina baltica OS145]
gi|85694108|gb|EAQ32053.1| DNA mismatch repair protein [Idiomarina baltica OS145]
Length = 853
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 1/187 (0%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
D + L ++TGPN GGKS+ +R +L G VPA A I + D I + + D
Sbjct: 607 TDKRRLLMITGPNMGGKSTYMRQAALIVILAHMGCFVPAREAEIGFVDRIFTRIGASDDI 666
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG 783
A G+S+F VEM+E +I+ TS SLVL+DEI RGT T G +A S+ E L + CL
Sbjct: 667 ASGRSTFMVEMTETANILHNATSESLVLMDEIGRGTSTYDGLSLAWSVAEQLASKLDCLT 726
Query: 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+ +TH + L +++N+ + + + V + +G S + AK GVP
Sbjct: 727 LFATHYFELTELAERLENSCNVHVEAQEHNDHIVFLHTVAEGSANRSFGLQVAKLAGVPN 786
Query: 844 TIIQRAE 850
+I+RA+
Sbjct: 787 NVIERAK 793
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ P +L R+GDFYE DA + L G E IP AG P
Sbjct: 20 QYLRIKAEHPDMLLFYRMGDFYELFYDDAKRAAQLLDISLTKRGASNGEPIPMAGVPYHA 79
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L L G SV I E+V P ++ R + PG+
Sbjct: 80 VENYLARLVTRGESVAICEQVGDPATSKGPVERKVVRILTPGT 122
>gi|284166482|ref|YP_003404761.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM
5511]
gi|284016137|gb|ADB62088.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM
5511]
Length = 895
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 118/269 (43%), Gaps = 6/269 (2%)
Query: 586 ELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKM 645
EL L E+ + +L L AL + + +WV P L G
Sbjct: 529 ELFEELREEVAARAELLQNVGRALATVDALASLATHAAENRWVQPELHR----GDRLDVE 584
Query: 646 NGLSPYWFDAAEGSAVHNTVDMQSLFLL-TGPNGGGKSSLLRSICAASLLGICGLMVPAE 704
G P E +D FL+ TGPN GKS+ +R + LL G VPAE
Sbjct: 585 QGRHPVVEQTTEFVPNDVRLDEDRGFLVVTGPNMSGKSTYMRQVAGIVLLAQIGSFVPAE 644
Query: 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAK 764
SA I D I + + D A G+S+F VEMSE+ +I+ T SLV++DE+ RGT T
Sbjct: 645 SAEIGLVDGIFTRVGALDELAQGRSTFMVEMSELSNILHTATEDSLVILDEVGRGTATYD 704
Query: 765 GTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLV 823
G IA + E L N + + +TH H + L K+ A + + DG +
Sbjct: 705 GISIAWAATEYLHNEVQAKTLFATHYHELTGLAEKLPRVANVHVAADERDGDVTFLRTVR 764
Query: 824 DGICRESLAFETAKREGVPETIIQRAEDL 852
DG S A GVP+ ++ R+ D+
Sbjct: 765 DGPTDRSYGIHVADLAGVPDPVVDRSRDV 793
>gi|398379618|ref|ZP_10537738.1| DNA mismatch repair protein MutS [Rhizobium sp. AP16]
gi|397722250|gb|EJK82794.1| DNA mismatch repair protein MutS [Rhizobium sp. AP16]
Length = 908
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 139/281 (49%), Gaps = 25/281 (8%)
Query: 575 EAGAKAKAKVLELLRGLS--SELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL 632
+AGA+A + V+++ GL+ +E Q +V AS + I V + RR+ P +
Sbjct: 577 KAGARALS-VIDVAAGLALLAEEQAYCRPVVDASRMFAIEGGRHPVVEQALRRQAGGPFV 635
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS 692
+ NC LSP D +G+ ++LLTGPN GGKS+ LR +
Sbjct: 636 AN------NC----DLSPTS-DGKDGA----------IWLLTGPNMGGKSTFLRQNALIA 674
Query: 693 LLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVL 752
+L G VPA SA I D + + + D A G+S+F VEM E +I+ T RSLV+
Sbjct: 675 ILAQMGSFVPATSAYIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVI 734
Query: 753 IDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 811
+DEI RGT T G IA + +E L C G+ +TH H + L K++ + M +
Sbjct: 735 LDEIGRGTATFDGLSIAWASVEHLHEANRCRGLFATHFHELTVLSEKLERLSNATMRVKE 794
Query: 812 LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
DG + ++ G S + A+ G+P +++ RA D+
Sbjct: 795 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPVSVVARARDV 835
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + IP G PV
Sbjct: 27 QYIEIKANNPGSLLFYRMGDFYELFFEDAVDASRALGITLTKRGQHMGQDIPMCGVPVHA 86
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L G+ V + E+++ P +A+ R
Sbjct: 87 ADDYLQKLISLGFRVAVCEQIEDPAEAKKR 116
>gi|283782023|ref|YP_003372778.1| DNA mismatch repair protein MutS [Pirellula staleyi DSM 6068]
gi|283440476|gb|ADB18918.1| DNA mismatch repair protein MutS [Pirellula staleyi DSM 6068]
Length = 869
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + SLL G +PA A+I D I + + D + G+S
Sbjct: 613 VMLITGPNMAGKSTYIRQVAVLSLLAHVGSFLPASRATIGICDRIFARVGASDELSRGQS 672
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM+E I+ + T+RSLV++DEI RGT T G +A +I+E L D IGC + +TH
Sbjct: 673 TFMVEMTETARILNSATARSLVILDEIGRGTSTYDGISLAWAIVEHLHDQIGCRTLFATH 732
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L + ++ Q V K+V G +S A+ GVP ++ +R
Sbjct: 733 YHELTDLAGSLAGVRNLSVAVREWQDQVVLLHKIVPGAADKSYGIHCARLAGVPRSVNER 792
Query: 849 AEDL 852
A+ +
Sbjct: 793 AKQI 796
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES-IPKAGCPVVNLRQTLDDLTRNGY 117
+LL R+GDFYE DA GL + E+ +P AG P L L L G
Sbjct: 21 LLLFRMGDFYELFHDDARTASRVLGLTLTTRDKGENPVPMAGFPYHQLEGYLAKLIGGGL 80
Query: 118 SVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ E+V+ P QA+ R ++ PG+
Sbjct: 81 RAAVCEQVEDPRQAKGLVKREVTRVVTPGT 110
>gi|430836453|ref|ZP_19454433.1| DNA mismatch repair protein mutS [Enterococcus faecium E0680]
gi|431380434|ref|ZP_19510815.1| DNA mismatch repair protein mutS [Enterococcus faecium E1627]
gi|431506813|ref|ZP_19515639.1| DNA mismatch repair protein mutS [Enterococcus faecium E1634]
gi|430488413|gb|ELA65092.1| DNA mismatch repair protein mutS [Enterococcus faecium E0680]
gi|430582302|gb|ELB20729.1| DNA mismatch repair protein mutS [Enterococcus faecium E1627]
gi|430587200|gb|ELB25433.1| DNA mismatch repair protein mutS [Enterococcus faecium E1634]
Length = 881
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P L D L +G P + N+V+M + + L
Sbjct: 552 ATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHG 791
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P +++RA D
Sbjct: 727 LTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.9 bits (102), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|449705043|gb|EMD45176.1| mutS family protein [Entamoeba histolytica KU27]
Length = 934
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 7/209 (3%)
Query: 650 PYWFDAAEGSAVHNTV-----DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 704
PY + + SA+ + + D Q++ +LTGPN GGKS+LLR++C A ++ G+ E
Sbjct: 695 PYLTVSTKTSAIPSNIILGGTDPQTI-ILTGPNMGGKSTLLRTVCLAVIMAQMGMRCTGE 753
Query: 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAK 764
++ D I + + D G S+F VE+ E ++ T SLV++DE+ RGT T
Sbjct: 754 EITMSVVDHIFTRIGASDDILHGMSTFMVELDETAQMLHDATQNSLVVLDELGRGTSTHD 813
Query: 765 GTCIAGSIIE-TLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLV 823
G IA +++E T+ I L IVSTH H + + + MG + Q + + L+
Sbjct: 814 GLAIAHAVVEYTVSKIKPLMIVSTHYHQLCEEFEERGDVKLSHMGCTIQNNQIIFLYTLL 873
Query: 824 DGICRESLAFETAKREGVPETIIQRAEDL 852
DG C +S + A+ G+P I+ RAE++
Sbjct: 874 DGACPKSYGMKVAEMAGLPTKIVHRAENI 902
>gi|257051545|ref|YP_003129378.1| DNA mismatch repair protein MutS [Halorhabdus utahensis DSM 12940]
gi|256690308|gb|ACV10645.1| DNA mismatch repair protein MutS [Halorhabdus utahensis DSM 12940]
Length = 865
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D L ++TGPN GKS+ +R + S+L G VPAESA + D + + + D A
Sbjct: 612 DDACLAVITGPNMSGKSTYMRQVALISILAQVGSFVPAESADLRIVDRVFTRVGASDDIA 671
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEMSE+ +I+ T+ SLVL+DE+ RGT T G IA ++ E + D +G +
Sbjct: 672 GGRSTFMVEMSELATILEGATANSLVLLDEVGRGTSTTDGLAIAQAVTEFIHDEVGATTL 731
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + + + A + TE + + + G S E A GVP+T
Sbjct: 732 FATHHHELTEVAADLNGAVNRHFRTEQAGEEVSFPYDIATGPAAASYGVEVAGVAGVPDT 791
Query: 845 IIQRAEDL 852
++ R+ +L
Sbjct: 792 VVGRSREL 799
>gi|423452929|ref|ZP_17429782.1| DNA mismatch repair protein mutS [Bacillus cereus BAG5X1-1]
gi|401139488|gb|EJQ47050.1| DNA mismatch repair protein mutS [Bacillus cereus BAG5X1-1]
Length = 887
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDLYIAC-GVNCVMIAAREQPPPSIIGASCVYVMLRPDK 887
+I RA+++ G ++I R + + V V P K
Sbjct: 778 LIARAKEVLAQLEGQEEIIIPKRVEVKVQEVAPEPVVVKEEPAK 821
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|171679627|ref|XP_001904760.1| hypothetical protein [Podospora anserina S mat+]
gi|170939439|emb|CAP64667.1| unnamed protein product [Podospora anserina S mat+]
Length = 925
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 105/193 (54%), Gaps = 6/193 (3%)
Query: 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 723
T D S ++TGPN GGKS+ +R I +L+ G VP ESA + FD+I+ + + DS
Sbjct: 654 TRDSSSFLIITGPNMGGKSTYIRQIGVIALMAQIGSFVPCESAELTIFDSILARVGASDS 713
Query: 724 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCL 782
G S+F EM E +I+ + TS SL++IDE+ RGT T G +A +I E + IGC
Sbjct: 714 QLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIIQQIGCF 773
Query: 783 GIVSTHLHGIFSLPLK---IKNAAYKAMGTEYLDGQTVPT--WKLVDGICRESLAFETAK 837
+ +TH H + +L K ++N A T D + T +KL GIC +S A+
Sbjct: 774 ALFATHFHELTALAEKYPQVQNLHVTAHITSDRDVKREVTLLYKLAPGICDQSFGIHVAE 833
Query: 838 REGVPETIIQRAE 850
P+ +++ A+
Sbjct: 834 LVRFPDKVVRMAK 846
>gi|448361785|ref|ZP_21550398.1| DNA mismatch repair protein MutS [Natrialba asiatica DSM 12278]
gi|445649465|gb|ELZ02402.1| DNA mismatch repair protein MutS [Natrialba asiatica DSM 12278]
Length = 901
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L ++TGPN GKS+ +R + +LL G VPA +A + D I + + D A G
Sbjct: 655 RRLAVITGPNMSGKSTYMRQVAQIALLAQVGSFVPARAARLTPVDRIFTRVGASDDIAGG 714
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +
Sbjct: 715 RSTFMVEMDELATILRDADERSLVLLDEVGRGTSTADGLAIAQAITEHLHDEVGATTLFA 774
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L + A + DG+ V ++ G S E A GVPE ++
Sbjct: 775 THHHPLTELADDLSAAFTLHFAVDQTDGEVVFHHEIEPGAATGSYGVEVATAAGVPEAVV 834
Query: 847 QRAEDL 852
R+ +L
Sbjct: 835 DRSREL 840
>gi|425744810|ref|ZP_18862865.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-323]
gi|425490406|gb|EKU56706.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-323]
Length = 885
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 131/281 (46%), Gaps = 13/281 (4%)
Query: 575 EAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD 634
E+ A A+ K+L L EL+ I L S + L + R W P
Sbjct: 530 ESRALAREKLL--FESLLDELRQNIAHLQMMSAAIAHIDVLANFAHQARLNSWARP---- 583
Query: 635 IELDGANCLKMN-GLSPY--WFDAAEGSAVHNTVDMQS-LFLLTGPNGGGKSSLLRSICA 690
E C+K+ G P A + +D Q + ++TGPN GGKS+ +R
Sbjct: 584 -EFTAETCIKIQAGRHPVVEALHKAPFTPNDTFLDPQHRMAIITGPNMGGKSTFMRQTAL 642
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
SLL CG VPA++A + D I + S D + GKS+F VEM+E I+ TS+SL
Sbjct: 643 ISLLAYCGSFVPAKAAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSL 702
Query: 751 VLIDEICRGTETAKGTCIA-GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809
VL+DE+ RGT T G +A +++ + CL + +TH + L + Y
Sbjct: 703 VLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELGSEAGIDNYHVTAQ 762
Query: 810 EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
E L+G + K+ G +S + AK G+P ++I+ A+
Sbjct: 763 E-LNGNLILLHKVQHGPASQSHGLQVAKLAGIPASVIKEAQ 802
>gi|149183368|ref|ZP_01861804.1| DNA mismatch repair protein [Bacillus sp. SG-1]
gi|148848911|gb|EDL63125.1| DNA mismatch repair protein [Bacillus sp. SG-1]
Length = 874
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 11/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYW---FDAAEGSAVHNTVDMQ-SLF 671
FA VSE +R +V P+ + +G P DA E +D + +
Sbjct: 550 FATVSE--KRHYVKPSFNR----DRKIMITDGRHPVVEKVMDAQEYVPNDCYMDQEREIL 603
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++L G VPA+ AS+P FD + + + D G+S+F
Sbjct: 604 LVTGPNMSGKSTYMRQLALTAILAQIGCYVPAKEASLPIFDQVFTRIGAADDLISGQSTF 663
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E ++ +T T SL+L DEI RGT T G +A +IIE + +NI + STH H
Sbjct: 664 MVEMLEAKNAITNATQDSLILFDEIGRGTSTYDGMALAQAIIEYIHENIKAKTLFSTHYH 723
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ N + +G V K+ +G +S A+ +PE +I RA
Sbjct: 724 ELTVLEQELANVKNIHVSAMEHNGNLVFLHKIKEGAADKSYGIHVAQLAELPENLIVRAN 783
Query: 851 DL 852
++
Sbjct: 784 EI 785
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K+++ L R+GDFYE I A +E + GG E IP G P
Sbjct: 10 QYLKVKAEYQDAFLFFRLGDFYEMFFEDAIKASQELEITLTSREGG-GTERIPMCGIPYH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGI-DHDLDF 162
+ ++ L GY V I E+ + P QA+ R + PG+ V G+ D + ++
Sbjct: 69 SAPNYIEQLIEKGYKVAICEQTEDPKQAKGVVKREVVQLITPGT--VMDGKGLQDKENNY 126
Query: 163 PEPMPVIGVSRSAKGYCIISILETMKT 189
+ + + +A Y +S ET T
Sbjct: 127 IASISLFDDNTAALAYSDLSTGETKVT 153
>gi|430823355|ref|ZP_19441926.1| DNA mismatch repair protein mutS [Enterococcus faecium E0120]
gi|430866387|ref|ZP_19481664.1| DNA mismatch repair protein mutS [Enterococcus faecium E1574]
gi|430442068|gb|ELA52116.1| DNA mismatch repair protein mutS [Enterococcus faecium E0120]
gi|430551615|gb|ELA91366.1| DNA mismatch repair protein mutS [Enterococcus faecium E1574]
Length = 881
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P L D L +G P + N+V+M + + L
Sbjct: 552 ATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHG 791
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P +++RA D
Sbjct: 727 LTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.9 bits (102), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|148241177|ref|YP_001226334.1| DNA mismatch repair protein MutS [Synechococcus sp. RCC307]
gi|189083202|sp|A5GQ22.1|MUTS_SYNR3 RecName: Full=DNA mismatch repair protein MutS
gi|147849487|emb|CAK26981.1| DNA mismatch repair protein MutS [Synechococcus sp. RCC307]
Length = 885
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 114/229 (49%), Gaps = 12/229 (5%)
Query: 636 ELDGANCLKMNGLSPYWFDA--AEGSAVHNTV-----DMQSLFLLTGPNGGGKSSLLRSI 688
EL CL++ G + +E + V N+V D L +LTGPN GKS LR
Sbjct: 645 ELTDGRCLEIEGGRHPVVEQLLSESAFVPNSVALGHGDKPDLVVLTGPNASGKSCYLRQC 704
Query: 689 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748
L+ G +PAE A+I D I + + D A G+S+F VEM+E +I+ + R
Sbjct: 705 GVLQLMAQMGSWIPAERAAIALADRIFTRVGAVDDLASGQSTFMVEMAETANILQHASER 764
Query: 749 SLVLIDEICRGTETAKGTCIAGSIIETLDN-----IGCLGIVSTHLHGIFSLPLKIKNAA 803
SLVL+DEI RGT T G IA ++ E L + +G I +TH H + +L N A
Sbjct: 765 SLVLLDEIGRGTATFDGLSIAWAVAEHLASAPPHGLGARSIFATHYHELNALAGSHSNVA 824
Query: 804 YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ E D + V K++ G S E A+ GVP +++QRA +
Sbjct: 825 NFQVVVEEQDAELVFLHKVMPGGADRSYGIEAARLAGVPPSVVQRARQM 873
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 49 LQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVVNL 105
++ K+ P VLL R+GDF+E DA + L+E GG +P AG P
Sbjct: 87 VELKAAHPERVLLYRLGDFFECFFEDALLTSRLLELTLTGKEGGKSIGRVPMAGIPHHAA 146
Query: 106 RQTLDDLTRNGYSVCIVEEVQ 126
+ +L R G++V + ++++
Sbjct: 147 ERYCSELVRRGHAVALCDQLE 167
>gi|442804336|ref|YP_007372485.1| DNA mismatch repair protein MutS [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740186|gb|AGC67875.1| DNA mismatch repair protein MutS [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 870
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 3/188 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + ++TGPN GKS+ LR + L+ G VPA A+I D I + + D A
Sbjct: 610 DTDRVIIITGPNMAGKSTYLRQVALIVLMAQMGSFVPASKATIGIVDRIFTRVGASDDLA 669
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCL 782
G+S+F VEM+E+ +I+ T RSL+++DEI RGT T G IA S+IE +++ +GC
Sbjct: 670 SGQSTFMVEMTEVANILNNATPRSLLILDEIGRGTSTHDGLAIAWSVIEYINDKSRLGCR 729
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L K+ + + + + K++ G +S E A GVP
Sbjct: 730 TLFATHYHELTELEDKLTGIKNCCIEVKKRGDEIIFLRKIIPGGADQSYGIEVAGLAGVP 789
Query: 843 ETIIQRAE 850
E +I+RA+
Sbjct: 790 ELVIERAK 797
>gi|91773655|ref|YP_566347.1| DNA mismatch repair protein MutS [Methanococcoides burtonii DSM
6242]
gi|121691668|sp|Q12VC9.1|MUTS_METBU RecName: Full=DNA mismatch repair protein MutS
gi|91712670|gb|ABE52597.1| DNA mismatch repair protein MutS [Methanococcoides burtonii DSM
6242]
Length = 887
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 7/213 (3%)
Query: 647 GLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP 702
G P G V N +M + L+TGPN GKS+ +R + ++ G VP
Sbjct: 594 GRHPVVEKTVRGGFVPNDTEMDCVDEQFLLITGPNMAGKSTYMRQVSLIVIMAQAGSFVP 653
Query: 703 AESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTET 762
A ASI D + + ++D A G+S+F VEM E+ +I+ T +SLVL+DEI RGT T
Sbjct: 654 ASHASIGIVDRVFTRVGAFDDLASGQSTFMVEMVELANILNNATPKSLVLLDEIGRGTST 713
Query: 763 AKGTCIAGSIIETLDNIGCLGIVS---THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 819
G IA +++E + N G +G+ S TH H + ++ +K + + V
Sbjct: 714 YDGYSIAKAVVEYIHNKGRVGVRSLFATHYHQLTNISSSLKRVKNYHIAVKEDGDDLVFL 773
Query: 820 WKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
K+V G +S A+ GVP + QRA+++
Sbjct: 774 RKIVPGATDKSYGIHVARLAGVPHKVTQRAKEV 806
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVVNLRQT 108
K + ++ R+GDFYE+ G DA I+ +E + E +P AG P L
Sbjct: 15 KKQHSDALIFFRMGDFYESFGEDAKIIAKELEITLTTRGKDIEGEKMPLAGIPYHALDNY 74
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L + GY V I E+++ P +A+ R + PG+
Sbjct: 75 LPRLIKKGYKVAICEQLEDPKKAKGIIKRGVVRVVTPGT 113
>gi|425054250|ref|ZP_18457763.1| DNA mismatch repair protein MutS [Enterococcus faecium 505]
gi|403036518|gb|EJY47866.1| DNA mismatch repair protein MutS [Enterococcus faecium 505]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISTADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P L D L +G P + N+V+M + + L
Sbjct: 552 ATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHG 791
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P +++RA D
Sbjct: 727 LTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|301055259|ref|YP_003793470.1| DNA mismatch repair protein [Bacillus cereus biovar anthracis str.
CI]
gi|423550481|ref|ZP_17526808.1| DNA mismatch repair protein mutS [Bacillus cereus ISP3191]
gi|300377428|gb|ADK06332.1| DNA mismatch repair protein [Bacillus cereus biovar anthracis str.
CI]
gi|401190097|gb|EJQ97147.1| DNA mismatch repair protein mutS [Bacillus cereus ISP3191]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 23/230 (10%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRA----------EDLYIACGVNCVMIAAREQ---PPPSIIGASCVYV 881
+I RA ED+ I V + A+EQ P P ++ V +
Sbjct: 778 LIARAKEVLAQLEGQEDIVIPKRVE---VKAQEQEVIPEPVVVKEEPVEI 824
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|255525226|ref|ZP_05392168.1| DNA mismatch repair protein MutS domain protein [Clostridium
carboxidivorans P7]
gi|255511089|gb|EET87387.1| DNA mismatch repair protein MutS domain protein [Clostridium
carboxidivorans P7]
Length = 512
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 4/198 (2%)
Query: 658 GSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V NT D Q L ++TGPN GKS+ +R + L+ G VPA+ A I D I
Sbjct: 209 NDTVINTSDEQ-LLIITGPNMAGKSTYMRQVALIVLMAQIGSFVPAKKAVISVCDKIFTR 267
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL- 776
+ + D A GKS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA S+IE +
Sbjct: 268 IGASDDLAAGKSTFMVEMWEVSNILKNATNKSLILLDEVGRGTSTYDGLSIAWSVIEYIC 327
Query: 777 --DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ C + +TH H + L I+ ++ + + V K++ G +S E
Sbjct: 328 SSKKLKCKTLFATHYHELTKLESIIEGVKNYSVSVKEIGSDIVFLRKIIRGGADQSYGIE 387
Query: 835 TAKREGVPETIIQRAEDL 852
AK G+P+ +I+RA+++
Sbjct: 388 VAKLAGLPDKVIERAKEI 405
>gi|42782853|ref|NP_980100.1| DNA mismatch repair protein MutS [Bacillus cereus ATCC 10987]
gi|222097215|ref|YP_002531272.1| DNA mismatch repair protein muts [Bacillus cereus Q1]
gi|48428286|sp|P61665.1|MUTS_BACC1 RecName: Full=DNA mismatch repair protein MutS
gi|254766615|sp|B9IV59.1|MUTS_BACCQ RecName: Full=DNA mismatch repair protein MutS
gi|42738780|gb|AAS42708.1| DNA mismatch repair protein MutS [Bacillus cereus ATCC 10987]
gi|221241273|gb|ACM13983.1| DNA mismatch repair protein MutS [Bacillus cereus Q1]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|228902272|ref|ZP_04066432.1| DNA mismatch repair protein mutS [Bacillus thuringiensis IBL 4222]
gi|228857387|gb|EEN01887.1| DNA mismatch repair protein mutS [Bacillus thuringiensis IBL 4222]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|229157348|ref|ZP_04285426.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 4342]
gi|228626075|gb|EEK82824.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 4342]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|352102490|ref|ZP_08959237.1| DNA mismatch repair protein MutS [Halomonas sp. HAL1]
gi|350600041|gb|EHA16119.1| DNA mismatch repair protein MutS [Halomonas sp. HAL1]
Length = 853
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 138/291 (47%), Gaps = 15/291 (5%)
Query: 570 LERYHEAGAKAKAKVLE----LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRR 625
L+ + + AK++ L L L EL ++ L S L L A
Sbjct: 507 LKEFEDKALSAKSRALTREKWLYDRLLGELNDSLHALQSTSQALAELDVLCAFAERAEAL 566
Query: 626 KWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGK 681
WV P L + A +++ G P +E V N V + Q + ++TGPN GGK
Sbjct: 567 SWVRPTLSE-----ATGIRIEAGRHPVVEQVSETPFVPNDVTLNPDQHMLIITGPNMGGK 621
Query: 682 SSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI 741
S+ +R +LL CG VPA++A I D I + S D A G+S+F VEM+E +I
Sbjct: 622 STYMRQTALIALLAHCGSFVPADAAEIGPLDRIFTRIGSSDDLAGGRSTFMVEMTETANI 681
Query: 742 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801
+ T +SL+L+DEI RGT T G +A + E L L + +TH + +LP ++
Sbjct: 682 LHNATQQSLILMDEIGRGTSTFDGLSLAWASAEYLAKGRALTLFATHYFEMTALPEHMEG 741
Query: 802 AAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
A + TE+ D V ++ G +S + A+ GVP +I+RA +
Sbjct: 742 VANIHLTATEHGDS-IVFMHRIEAGPASQSYGLQVAQLAGVPGHVIKRARE 791
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGID---ACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K + P +L R+GDFYE D A L++ L G + IP AG P
Sbjct: 14 QYLKIKREHPEVLLFYRMGDFYELFFDDAKRAAALLDIT-LTQRGQSGGKPIPMAGVPYH 72
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHD 159
+ L L G SV I E++ P ++ R + PG+ + L+ D
Sbjct: 73 SAEGYLARLVAGGESVAICEQIGDPATSKGPVDRQVVRIVTPGTLHDEALLDARRD 128
>gi|402556108|ref|YP_006597379.1| DNA mismatch repair protein MutS [Bacillus cereus FRI-35]
gi|401797318|gb|AFQ11177.1| DNA mismatch repair protein MutS [Bacillus cereus FRI-35]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|423136921|ref|ZP_17124564.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371960988|gb|EHO78631.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 876
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 154/298 (51%), Gaps = 31/298 (10%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + FAH++
Sbjct: 510 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFAHIA 566
Query: 621 EGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLT 674
+ +V P + + +E+ G + L A G+ V N + D +L +LT
Sbjct: 567 --TKNSYVKPKISEEDILEIKGGRHPIVETL------IASGTYVKNDIVLDDKNNLIILT 618
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +E
Sbjct: 619 GPNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLE 678
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF 793
M+E+ SI+ T++S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 679 MTEVASILNNATNKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELT 738
Query: 794 SLPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 739 ELEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 794
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQ 107
+ K ++P E+L+ R+GDFYE DA I + G L + + +P AG P ++
Sbjct: 13 KIKEEYPNEILMYRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYS+ I ++V+ P A R ++ PG+
Sbjct: 73 YIAKLVEKGYSIAICDQVEDPKSATGIVKREVTRVITPGT 112
>gi|448368920|ref|ZP_21555687.1| DNA mismatch repair protein MutS [Natrialba aegyptia DSM 13077]
gi|445651463|gb|ELZ04371.1| DNA mismatch repair protein MutS [Natrialba aegyptia DSM 13077]
Length = 898
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 140/299 (46%), Gaps = 5/299 (1%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F T +++E + A +A + EL + + ++ + + L I AL +
Sbjct: 542 ERFVTPELKEREDEIVGAEERADEREYELFCDVRRTVADEVERVQRLADALAILDALVSL 601
Query: 619 VSEGRRRKWVFPALKDIEL-DGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLT 674
+ + + P + D E DG + + G + + S V N + + L ++T
Sbjct: 602 ATVAAQYDYCRPEILDREAADGGLEIDIEGGRHPVVERTQESFVPNGARLSPERRLAVIT 661
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ +R + LL G VPA +A + D I + + D A G+S+F VE
Sbjct: 662 GPNMSGKSTYMRQVAQIVLLAQVGSFVPARAARLTPVDRIFTRVGASDDIAGGRSTFMVE 721
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF 793
M E+ +I+ RSLVL+DE+ RGT TA G IA +I E L D +G + +TH H +
Sbjct: 722 MDELATILRDADERSLVLLDEVGRGTSTADGLAIAQAITEHLHDEVGATTLFATHHHPLT 781
Query: 794 SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
L + A + DG+ V ++ G S E A GVPE ++ R+ +L
Sbjct: 782 ELADDLPAAFTLHFAVDQTDGEVVFHHEIEPGAATGSYGVEVATAAGVPEAVVDRSREL 840
>gi|425058567|ref|ZP_18461945.1| DNA mismatch repair protein MutS [Enterococcus faecium 504]
gi|403038160|gb|EJY49393.1| DNA mismatch repair protein MutS [Enterococcus faecium 504]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
>gi|353237857|emb|CCA69819.1| probable DNA mismatch repair protein MSH2 [Piriformospora indica
DSM 11827]
Length = 926
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 18/299 (6%)
Query: 563 TLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEG 622
+++ E ERY+ + A+V+ + G + L+ +I+ +++ FAHVS
Sbjct: 551 SVEYSELRERYNRVQSTLVAEVVSIASGYTPVLEAVDDIIAHLDVIVS-----FAHVSAN 605
Query: 623 RRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNG 678
+V P + E N L P + S + N V+M ++TGPN
Sbjct: 606 APSNYVKPVV--TEKGTGNLLLKEARHPCLEVQEDISFIPNDVEMIRGKSEFHIITGPNT 663
Query: 679 GGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEI 738
GGKS+ R I +L+ G VP ESA IP FD I+ + + DS G S+F EM E
Sbjct: 664 GGKSTYARQIGVIALMAQVGCFVPCESAEIPIFDCILARVGAGDSQLKGVSTFMAEMLES 723
Query: 739 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPL 797
+I+ T SL++IDE+ RGT TA G IA +I E + I + +TH H + +L
Sbjct: 724 AAILKTATPNSLIIIDELGRGTSTADGFGIAWAISEYIATTIRAFCLFATHFHELTTLSQ 783
Query: 798 KI---KNA---AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+I KNA A+ + G + + +K+ +G +S A+ PE++++ A+
Sbjct: 784 QIPHVKNAHVVAHVSEGEGSKEKEITLLYKVEEGPSDQSFGIHVAQLCNFPESVVKHAK 842
>gi|429328637|gb|AFZ80397.1| DNA mismatch repair protein, putative [Babesia equi]
Length = 1173
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Query: 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724
VD + + ++TGPN GGKS+LLR + A ++ G V A S D I + + D+
Sbjct: 945 VDSKGIIVITGPNMGGKSTLLRQVALAVIMAQIGSYVTATSCEFTVVDCIFTRLGASDNL 1004
Query: 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI 784
GKS+F VE+ +I ++++ T SL L+DE+ RGT T GT IA + +E + I C I
Sbjct: 1005 MQGKSTFLVELQDISALLSKATKNSLALVDELGRGTSTFDGTAIAVASLEKISEINCRCI 1064
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEY-LDGQTVP-TWKLVDGICRESLAFETAKREGVP 842
+TH + ++ N M + + Q V +KL++GIC ES AK G+P
Sbjct: 1065 FTTHFQDVCKAAKEMYNVVMYHMAAKIDEESQNVEFLYKLIEGICPESQGLHVAKLAGIP 1124
Query: 843 ETIIQRA 849
+ +I A
Sbjct: 1125 KNVIDIA 1131
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 46 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 105
W++ Q S F +L ++G FYE DACI+ L G E+ P G P +L
Sbjct: 322 WKLKQ--SHFD-SLLFFKMGKFYELFYHDACIIQSLCSLRWMGS---ETKPHVGFPEKSL 375
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
GY V ++E+ + P Q R
Sbjct: 376 HTYASTCVDAGYKVVVIEQTETPQQLEQR 404
>gi|312863960|ref|ZP_07724197.1| DNA mismatch repair protein MutS [Streptococcus vestibularis F0396]
gi|322517652|ref|ZP_08070517.1| DNA mismatch repair protein HexA [Streptococcus vestibularis ATCC
49124]
gi|311100526|gb|EFQ58732.1| DNA mismatch repair protein MutS [Streptococcus vestibularis F0396]
gi|322123729|gb|EFX95314.1| DNA mismatch repair protein HexA [Streptococcus vestibularis ATCC
49124]
Length = 852
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 2/210 (0%)
Query: 664 TVDMQS-LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 722
T D Q+ + L+TGPN GKS+ +R + + ++ G VPA+S +P FDAI + + D
Sbjct: 590 TFDSQTNVQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPIFDAIYTRIGAAD 649
Query: 723 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 781
G+S+F VEM E + T SL++ DE+ RGT T G +A SIIE + D +G
Sbjct: 650 DLISGQSTFMVEMMEANQAIKRGTPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGA 709
Query: 782 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + +L + + + T DG+ K+VDG +S AK G+
Sbjct: 710 KTMFATHYHELTALSNSLPHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGL 769
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPP 871
P +++RA + V I +E+ P
Sbjct: 770 PADLLERAGTILTQLEGETVTIQPQEKVSP 799
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQAYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|257899421|ref|ZP_05679074.1| DNA mismatch repair protein MutS [Enterococcus faecium Com15]
gi|257837333|gb|EEV62407.1| DNA mismatch repair protein MutS [Enterococcus faecium Com15]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P L D L +G P + N+V+M + + L
Sbjct: 552 ATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHG 791
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P +++RA D
Sbjct: 727 LTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.9 bits (102), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|229000593|ref|ZP_04160133.1| DNA mismatch repair protein mutS [Bacillus mycoides Rock3-17]
gi|229006015|ref|ZP_04163704.1| DNA mismatch repair protein mutS [Bacillus mycoides Rock1-4]
gi|228755214|gb|EEM04570.1| DNA mismatch repair protein mutS [Bacillus mycoides Rock1-4]
gi|228759148|gb|EEM08154.1| DNA mismatch repair protein mutS [Bacillus mycoides Rock3-17]
Length = 906
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 617 DVFLITGPNMSGKSTYMRQLALITVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 676
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 677 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 736
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 737 HYHELTVLEESLERLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 793
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 794 LIARAKEV 801
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K+ + L R+GDFYE I A +E + GG + IP G P
Sbjct: 26 QYLKVKADYQDAFLFFRLGDFYEMFFEDAIKAAHELEITLTSRDGG-SSDRIPMCGVPYH 84
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 85 AAKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 128
>gi|229092807|ref|ZP_04223945.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-42]
gi|228690605|gb|EEL44386.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-42]
Length = 882
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|310778160|ref|YP_003966493.1| DNA mismatch repair protein MutS [Ilyobacter polytropus DSM 2926]
gi|309747483|gb|ADO82145.1| DNA mismatch repair protein MutS [Ilyobacter polytropus DSM 2926]
Length = 869
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 4/197 (2%)
Query: 658 GSAVHNTV---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
G V N + D +S+ +LTGPN GKS+ ++ + L+ G VPAE A I D I
Sbjct: 594 GEFVKNDILLDDDKSIIILTGPNMAGKSTYMKQLALIILMAQIGSYVPAEFAKIGIVDKI 653
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE+ +IV T +S V++DE+ RGT T G IA SI E
Sbjct: 654 FTRVGASDDLVSGQSTFMVEMSEVANIVNNATEKSFVILDEVGRGTSTFDGISIASSITE 713
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ D IG + +TH H + L K++ A + + + V ++V G +S
Sbjct: 714 YIHDKIGSKTVFATHYHELTELEGKLEKAENYRIEVKETENDVVFLREIVKGGADKSYGI 773
Query: 834 ETAKREGVPETIIQRAE 850
E A+ G+P I+ +++
Sbjct: 774 EVARLAGLPREILNKSK 790
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNG 116
+L R+GDFYE DA I + G L + +++P AG P + + L R G
Sbjct: 22 ILFFRLGDFYEMFFDDAVIASKELGITLTSRNKEKGQNVPLAGIPYHSSASYMAKLVRKG 81
Query: 117 YSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
Y V + E+V+ P A+ R + PG+
Sbjct: 82 YKVAVCEQVEDPKTAKGIVKREVVKVITPGT 112
>gi|20807804|ref|NP_622975.1| DNA mismatch repair protein MutS [Thermoanaerobacter tengcongensis
MB4]
gi|44888228|sp|Q8RA71.1|MUTS_THETN RecName: Full=DNA mismatch repair protein MutS
gi|20516362|gb|AAM24579.1| MutS-like ATPases involved in mismatch repair, family 2
[Thermoanaerobacter tengcongensis MB4]
Length = 869
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 145/283 (51%), Gaps = 16/283 (5%)
Query: 580 AKAKVLELLRGLSSELQTKINILVF-----ASMLLVIGKAL-FAHVSEGRRRKWVFPALK 633
A+ K++EL L +E++ K+ + + A + +I + FA V+E K+V P
Sbjct: 521 AEEKLIELEYELFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETN--KYVKPI-- 576
Query: 634 DIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICA 690
++ + +K G P ++ V N +D+ + ++TGPN GKS+ +R +
Sbjct: 577 -VDYEDRIVIK-EGRHPVVETISDEGFVANDIDIGPENPIMIITGPNMAGKSTYMRQVAL 634
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
L+ G VPA A I D I + + D G+S+F VEMSE+ +I+ + TS+SL
Sbjct: 635 IVLMAQVGCFVPASYARIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSL 694
Query: 751 VLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809
+++DE+ RGT T G IA ++IE + + I + +TH H + L K++ +
Sbjct: 695 IILDEVGRGTSTYDGMSIAQAVIEYIHEKIKAKTLFATHYHELTKLEGKLRGVRNFNVSV 754
Query: 810 EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
E + + K+V G S + +K G+P +II+RA+++
Sbjct: 755 EEREDDIIFLHKIVPGGSDRSYGIQVSKLAGLPYSIIERAKEI 797
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+ +L R+GDFYE DA I +E A G E P AG P
Sbjct: 12 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTE-ERAPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P++A+ R + PG+
Sbjct: 71 AADFYIDKLVKKGYKVAICEQLEDPSKAKGLVKRDVVRIYTPGT 114
>gi|380011142|ref|XP_003689671.1| PREDICTED: probable DNA mismatch repair protein Msh6-like [Apis
florea]
Length = 1126
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 24/331 (7%)
Query: 539 EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTK 598
+ Q K++ + + ++ G + + T + +E L R A + +L R + ++ K
Sbjct: 771 DSQTKKVGAGFELQSQRKGYKRYYTAESKELLSRQINAEEHRDKVLKDLNRRIFAQFSEK 830
Query: 599 INILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD-------IEL-DGAN-CLKMNGLS 649
++ A L + L + P + D I++ DG + C+ +
Sbjct: 831 YDMWNMAVYKLSVLDVLISLTEYALSGDMCVPEINDGTNEKIFIDIRDGRHPCIISDTFI 890
Query: 650 PYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 709
P + T + S +LTGPN GGKS+L+R + +++ G VPA S +
Sbjct: 891 P-------NDTLLATENFASFMILTGPNMGGKSTLMRQVALLTIMAQIGSYVPASSCRLT 943
Query: 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 769
D I + + D G+S+F VE+SE +I+ T SLVL+DE+ RGT T GT IA
Sbjct: 944 LVDRIFTRLGANDDILAGQSTFLVELSETSAILQHATPYSLVLLDELGRGTSTYDGTAIA 1003
Query: 770 GSIIETLDNIGCLGIVSTHLHGI---FSLPLKIKNAAYKAM-GTEYLDGQTVPT----WK 821
+++ L + C + STH H + + KI A M E D + T +K
Sbjct: 1004 AAVVNALTKLNCRTLFSTHYHSLVEDYKNDKKITLAHMACMVENEEQDEVSQETVTFLYK 1063
Query: 822 LVDGICRESLAFETAKREGVPETIIQRAEDL 852
L +G C +S F A+ GVP I RA ++
Sbjct: 1064 LSEGACPKSYGFNAARLGGVPAIITNRAHEI 1094
>gi|373496505|ref|ZP_09587051.1| DNA mismatch repair protein MutS [Fusobacterium sp. 12_1B]
gi|371965394|gb|EHO82894.1| DNA mismatch repair protein MutS [Fusobacterium sp. 12_1B]
Length = 874
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 143/294 (48%), Gaps = 21/294 (7%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILVFASMLLVIGKAL--FAHVSEGR 623
L+ Y E AK K+ +L + +S E+++ IL + + + AH++
Sbjct: 505 LKEYEEKVLNAKDKIENLEYQLFKEVSYEIKSHKGILQDLAYKIAYLDVMSDLAHIA--I 562
Query: 624 RRKWVFPAL---KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV---DMQSLFLLTGPN 677
+ ++ P + KDIE+ + L P G V N + D + + +LTGPN
Sbjct: 563 KNSYIQPEMHGGKDIEIIAGRHPIVEKLIP------SGEYVKNNIVLDDNKEMIILTGPN 616
Query: 678 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 737
GKS+ ++ + ++ G VPA A I D I + + D G+S+F +EMSE
Sbjct: 617 MSGKSTYMKQVALIIIMAHMGSYVPANYAKIGLVDKIFTRIGASDDLLTGQSTFMLEMSE 676
Query: 738 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP 796
+ +IV + T RS +++DEI RGT T G IA +I E + + IG I +TH H + L
Sbjct: 677 VANIVNSATDRSFIILDEIGRGTSTFDGISIATAITEYIHERIGAKTIFATHYHELTQLE 736
Query: 797 LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
K+ A + + D + V ++V G +S E A+ G+P+ I+ R++
Sbjct: 737 DKLDRAENYRIEVKENDKEIVFLREIVKGGADKSYGIEVARLAGLPKEILDRSK 790
Score = 46.2 bits (108), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP--ESIPKAGCPVVNLRQ 107
+ K + +L R+GDFYE DA I + GL R + +P AG P ++
Sbjct: 13 EIKEQNKDNLLFFRLGDFYEMFFDDAVIASKELGLTLTSRNREKGQDVPLAGVPYHSVSS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+V+ P + R + PG+
Sbjct: 73 YIAKLVNKGYKVAICEQVEDPKSVKGIVKREVVRVITPGT 112
>gi|417302906|ref|ZP_12089984.1| DNA mismatch repair protein MutS [Rhodopirellula baltica WH47]
gi|327540783|gb|EGF27349.1| DNA mismatch repair protein MutS [Rhodopirellula baltica WH47]
Length = 891
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E + T +++E E+ A KA ++ L L + IL + + + + +
Sbjct: 515 ERYITPELKEYEEKVLAADEKASSREQMLFTLLRENTHKHLAILQEVANAIAMTDVVASL 574
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTVDMQS----LFL 672
+ WV P L D + L++ G D A+G V N + + L
Sbjct: 575 AEVAAQHHWVRPTLTD-----DSVLRIEGGRHPVLDVTMAQGEFVPNDCNQSPETGMILL 629
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + +LL G VPA SA I D I + + D + G+S+F
Sbjct: 630 ITGPNMAGKSTYIRQVALITLLAQTGSFVPATSAEIGIADRIFARVGASDELSRGQSTFM 689
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEM E I+ TSRSLV++DEI RGT T G +A +I E L + IG + +TH H
Sbjct: 690 VEMVETARILNTATSRSLVILDEIGRGTSTYDGLSLAWAITEHLHEQIGARTLFATHYHE 749
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ +L + A ++ + + V ++V G +S + A+ G+P + +RA+D
Sbjct: 750 LAALQETLPRVANLSVAVKEWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERAKD 809
Query: 852 L 852
+
Sbjct: 810 V 810
>gi|423574624|ref|ZP_17550743.1| DNA mismatch repair protein mutS [Bacillus cereus MSX-D12]
gi|401212149|gb|EJR18895.1| DNA mismatch repair protein mutS [Bacillus cereus MSX-D12]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|423437224|ref|ZP_17414205.1| DNA mismatch repair protein mutS [Bacillus cereus BAG4X12-1]
gi|401120379|gb|EJQ28175.1| DNA mismatch repair protein mutS [Bacillus cereus BAG4X12-1]
Length = 890
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLNQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|228986913|ref|ZP_04147040.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772862|gb|EEM21301.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|434376827|ref|YP_006611471.1| DNA mismatch repair protein MutS [Bacillus thuringiensis HD-789]
gi|401875384|gb|AFQ27551.1| DNA mismatch repair protein MutS [Bacillus thuringiensis HD-789]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|384109603|ref|ZP_10010474.1| DNA mismatch repair protein MutS [Treponema sp. JC4]
gi|383868827|gb|EID84455.1| DNA mismatch repair protein MutS [Treponema sp. JC4]
Length = 880
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 156/327 (47%), Gaps = 28/327 (8%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGK-- 613
V + ++T +++E ++ +E+ K +LEL R L E++ ++ + LL I
Sbjct: 499 VNGDRYTTNRLQELEQQLNESSTK----ILELERDLFIEVRR--SLAQYIEYLLQIADEI 552
Query: 614 ------ALFAHVSEGRRRKWVFPALKD---IEL-DGANCLKMNGLSPYWFDAAEGSAVHN 663
A FA + R W+ P + + E+ G + + N L F + +
Sbjct: 553 ANTDVTASFAQAAISHR--WIRPEMDESCMFEIKSGRHPVVENHLPSGEFVPNDSLISSD 610
Query: 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 723
+ S L+TGPN GKS+ LR +LL G +PAE A + D I + + D+
Sbjct: 611 DDAVPSFDLITGPNMAGKSTYLRQNALIALLAQTGSYIPAEKAHLGIVDRIFCRVGASDN 670
Query: 724 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCL 782
A G+S+F VEM+E +I+ A T RSLV++DE+ RGT T G IA ++ E LD I C
Sbjct: 671 LAKGESTFLVEMTETANILHAATKRSLVIMDEVGRGTSTEDGLAIARAVSEYLLDTIKCK 730
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+TH H + ++ N + M G V K+ +G+ S A G+P
Sbjct: 731 TFFATHYHELSR--MEHSNLKFLCMDVSEQQGSVVFLRKIKEGVTENSYGIHVAALAGIP 788
Query: 843 ETIIQRAEDLYIACGVNCVMIAAREQP 869
+T+I RA+ + + + AA E+P
Sbjct: 789 KTVIDRAKTI-----LTHIQNAAAEKP 810
>gi|340753655|ref|ZP_08690431.1| DNA mismatch repair protein mutS [Fusobacterium sp. 2_1_31]
gi|229423218|gb|EEO38265.1| DNA mismatch repair protein mutS [Fusobacterium sp. 2_1_31]
Length = 877
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 149/295 (50%), Gaps = 25/295 (8%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ +L + LSSE++ I L A++ +V + FAH++
Sbjct: 510 LKEYEEKVITAKSKIEALEYDLFKSLSSEIKEHIESLYKLANRIANLDIV---SNFAHIA 566
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTV---DMQSLFLLTG 675
+ +V P E+ N L++ G ++ A GS V N + + +L +LTG
Sbjct: 567 --TKNSYVKP-----EISEENILEIKGGRHPIVESLIASGSYVKNDIVLDEKNNLIILTG 619
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ ++ + ++ G V A+ A IP D I + + D G+S+F +EM
Sbjct: 620 PNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEM 679
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794
+E+ SI+ T +S +++DEI RGT T G IA +I E + +NIG I +TH H +
Sbjct: 680 TEVASILNNATEKSFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTE 739
Query: 795 LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A + + V ++V G +S E A+ GVP+ ++ R+
Sbjct: 740 LEKELERAINFRVEVKENGKNVVFLREIVKGGADKSYGIEVARLSGVPKDVLNRS 794
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN--PFGGLRPESIPKAGCPVVNLRQ 107
+ K ++ E+L+ R+GDFYE DA I + GL + + +P AG P ++
Sbjct: 13 KIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 72
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYSV I E+V+ P A R ++ PG+
Sbjct: 73 YIAKLVEKGYSVAICEQVEDPKAATGIVKREVTRVITPGT 112
>gi|229197880|ref|ZP_04324596.1| DNA mismatch repair protein mutS [Bacillus cereus m1293]
gi|228585598|gb|EEK43700.1| DNA mismatch repair protein mutS [Bacillus cereus m1293]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|423378445|ref|ZP_17355729.1| DNA mismatch repair protein mutS [Bacillus cereus BAG1O-2]
gi|423441501|ref|ZP_17418407.1| DNA mismatch repair protein mutS [Bacillus cereus BAG4X2-1]
gi|423448273|ref|ZP_17425152.1| DNA mismatch repair protein mutS [Bacillus cereus BAG5O-1]
gi|423464575|ref|ZP_17441343.1| DNA mismatch repair protein mutS [Bacillus cereus BAG6O-1]
gi|423533917|ref|ZP_17510335.1| DNA mismatch repair protein mutS [Bacillus cereus HuB2-9]
gi|423540814|ref|ZP_17517205.1| DNA mismatch repair protein mutS [Bacillus cereus HuB4-10]
gi|423547053|ref|ZP_17523411.1| DNA mismatch repair protein mutS [Bacillus cereus HuB5-5]
gi|423623156|ref|ZP_17598934.1| DNA mismatch repair protein mutS [Bacillus cereus VD148]
gi|401128867|gb|EJQ36550.1| DNA mismatch repair protein mutS [Bacillus cereus BAG5O-1]
gi|401172002|gb|EJQ79223.1| DNA mismatch repair protein mutS [Bacillus cereus HuB4-10]
gi|401178774|gb|EJQ85947.1| DNA mismatch repair protein mutS [Bacillus cereus HuB5-5]
gi|401259929|gb|EJR66103.1| DNA mismatch repair protein mutS [Bacillus cereus VD148]
gi|401635212|gb|EJS52968.1| DNA mismatch repair protein mutS [Bacillus cereus BAG1O-2]
gi|402418162|gb|EJV50462.1| DNA mismatch repair protein mutS [Bacillus cereus BAG4X2-1]
gi|402420842|gb|EJV53113.1| DNA mismatch repair protein mutS [Bacillus cereus BAG6O-1]
gi|402464136|gb|EJV95836.1| DNA mismatch repair protein mutS [Bacillus cereus HuB2-9]
Length = 890
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYEDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|423469982|ref|ZP_17446726.1| DNA mismatch repair protein mutS [Bacillus cereus BAG6O-2]
gi|402437234|gb|EJV69258.1| DNA mismatch repair protein mutS [Bacillus cereus BAG6O-2]
Length = 887
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|293377536|ref|ZP_06623731.1| DNA mismatch repair protein MutS [Enterococcus faecium PC4.1]
gi|292643851|gb|EFF61966.1| DNA mismatch repair protein MutS [Enterococcus faecium PC4.1]
Length = 670
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 340 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 394
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 395 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 454
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 455 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 514
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 515 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAA 574
Query: 851 DL 852
D+
Sbjct: 575 DI 576
>gi|229104333|ref|ZP_04235002.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-28]
gi|407706174|ref|YP_006829759.1| phosphatidate cytidylyltransferase [Bacillus thuringiensis MC28]
gi|228679031|gb|EEL33239.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-28]
gi|407383859|gb|AFU14360.1| DNA mismatch repair protein mutS [Bacillus thuringiensis MC28]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|296504268|ref|YP_003665968.1| DNA mismatch repair protein [Bacillus thuringiensis BMB171]
gi|423585820|ref|ZP_17561907.1| DNA mismatch repair protein mutS [Bacillus cereus VD045]
gi|423628850|ref|ZP_17604599.1| DNA mismatch repair protein mutS [Bacillus cereus VD154]
gi|423641148|ref|ZP_17616766.1| DNA mismatch repair protein mutS [Bacillus cereus VD166]
gi|423649634|ref|ZP_17625204.1| DNA mismatch repair protein mutS [Bacillus cereus VD169]
gi|423656630|ref|ZP_17631929.1| DNA mismatch repair protein mutS [Bacillus cereus VD200]
gi|296325320|gb|ADH08248.1| DNA mismatch repair protein [Bacillus thuringiensis BMB171]
gi|401233166|gb|EJR39662.1| DNA mismatch repair protein mutS [Bacillus cereus VD045]
gi|401268395|gb|EJR74443.1| DNA mismatch repair protein mutS [Bacillus cereus VD154]
gi|401280209|gb|EJR86131.1| DNA mismatch repair protein mutS [Bacillus cereus VD166]
gi|401282914|gb|EJR88811.1| DNA mismatch repair protein mutS [Bacillus cereus VD169]
gi|401290371|gb|EJR96065.1| DNA mismatch repair protein mutS [Bacillus cereus VD200]
Length = 890
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|228947490|ref|ZP_04109780.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228812010|gb|EEM58341.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGGSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|254557089|ref|YP_003063506.1| DNA mismatch repair protein MutS [Lactobacillus plantarum JDM1]
gi|254046016|gb|ACT62809.1| DNA mismatch repair protein [Lactobacillus plantarum JDM1]
Length = 896
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 103/195 (52%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N V M +++ L+TGPN GKS+ +R + ++ G VPA+SA +P FD I
Sbjct: 588 SYVPNNVTMSPDETVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIF 647
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + + T SLVL DEI RGT T G +A +IIE
Sbjct: 648 TRIGATDDLISGQSTFMVEMQEANNALQHATVNSLVLFDEIGRGTATYDGMALAQAIIEF 707
Query: 776 LDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N I + STH H + +L ++ +G DG+ V K+ G +S
Sbjct: 708 VHNHIHAKTLFSTHYHELTALDQELSGLRNVHVGATEQDGELVFLHKVEPGAADKSYGVH 767
Query: 835 TAKREGVPETIIQRA 849
AK G+P ++++RA
Sbjct: 768 VAKLAGMPTSLLERA 782
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIP 96
K+ + + K+++P L R+GDFYE DA L+E L IP
Sbjct: 6 KDTPMMRQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELT-LTTRNHSAENPIP 64
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P ++ +D L GY V I E+++ P A+ R + PG+
Sbjct: 65 MCGVPHRAVQNYIDILVDKGYKVAICEQMEDPKLAKGMVKREVIQLVTPGT 115
>gi|228940847|ref|ZP_04103407.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973768|ref|ZP_04134345.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980323|ref|ZP_04140634.1| DNA mismatch repair protein mutS [Bacillus thuringiensis Bt407]
gi|228779428|gb|EEM27684.1| DNA mismatch repair protein mutS [Bacillus thuringiensis Bt407]
gi|228785920|gb|EEM33922.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818861|gb|EEM64926.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|206972648|ref|ZP_03233590.1| DNA mismatch repair protein MutS [Bacillus cereus AH1134]
gi|365159455|ref|ZP_09355635.1| DNA mismatch repair protein mutS [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412426|ref|ZP_17389546.1| DNA mismatch repair protein mutS [Bacillus cereus BAG3O-2]
gi|423425907|ref|ZP_17402938.1| DNA mismatch repair protein mutS [Bacillus cereus BAG3X2-2]
gi|423431789|ref|ZP_17408793.1| DNA mismatch repair protein mutS [Bacillus cereus BAG4O-1]
gi|423503552|ref|ZP_17480144.1| DNA mismatch repair protein mutS [Bacillus cereus HD73]
gi|449090713|ref|YP_007423154.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|206732461|gb|EDZ49641.1| DNA mismatch repair protein MutS [Bacillus cereus AH1134]
gi|363625167|gb|EHL76212.1| DNA mismatch repair protein mutS [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104494|gb|EJQ12471.1| DNA mismatch repair protein mutS [Bacillus cereus BAG3O-2]
gi|401110654|gb|EJQ18553.1| DNA mismatch repair protein mutS [Bacillus cereus BAG3X2-2]
gi|401116545|gb|EJQ24383.1| DNA mismatch repair protein mutS [Bacillus cereus BAG4O-1]
gi|402458906|gb|EJV90646.1| DNA mismatch repair protein mutS [Bacillus cereus HD73]
gi|449024470|gb|AGE79633.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 890
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLNQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|69248279|ref|ZP_00604703.1| MutS 1 protein [Enterococcus faecium DO]
gi|257878801|ref|ZP_05658454.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,230,933]
gi|257881439|ref|ZP_05661092.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,502]
gi|257890660|ref|ZP_05670313.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,410]
gi|261207074|ref|ZP_05921763.1| DNA mismatch repair protein MutS [Enterococcus faecium TC 6]
gi|289565924|ref|ZP_06446364.1| DNA mismatch repair protein MutS [Enterococcus faecium D344SRF]
gi|293563776|ref|ZP_06678215.1| DNA mismatch repair protein MutS [Enterococcus faecium E1162]
gi|294614622|ref|ZP_06694526.1| DNA mismatch repair protein MutS [Enterococcus faecium E1636]
gi|294621199|ref|ZP_06700384.1| DNA mismatch repair protein MutS [Enterococcus faecium U0317]
gi|314938825|ref|ZP_07846096.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a04]
gi|314943631|ref|ZP_07850385.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133C]
gi|314948710|ref|ZP_07852083.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0082]
gi|314952160|ref|ZP_07855178.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133A]
gi|314991866|ref|ZP_07857323.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133B]
gi|314996579|ref|ZP_07861614.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a01]
gi|383327496|ref|YP_005353380.1| DNA mismatch repair protein MutS [Enterococcus faecium Aus0004]
gi|389867318|ref|YP_006374741.1| DNA mismatch repair protein MutS [Enterococcus faecium DO]
gi|415891069|ref|ZP_11549654.1| DNA mismatch repair protein MutS [Enterococcus faecium E4453]
gi|424802623|ref|ZP_18228109.1| DNA mismatch repair protein MutS [Enterococcus faecium S447]
gi|424827507|ref|ZP_18252302.1| DNA mismatch repair protein MutS [Enterococcus faecium R501]
gi|424857781|ref|ZP_18281880.1| DNA mismatch repair protein MutS [Enterococcus faecium R499]
gi|424868969|ref|ZP_18292694.1| DNA mismatch repair protein MutS [Enterococcus faecium R497]
gi|424950343|ref|ZP_18365511.1| DNA mismatch repair protein MutS [Enterococcus faecium R496]
gi|424954585|ref|ZP_18369476.1| DNA mismatch repair protein MutS [Enterococcus faecium R494]
gi|424957683|ref|ZP_18372393.1| DNA mismatch repair protein MutS [Enterococcus faecium R446]
gi|424960856|ref|ZP_18375335.1| DNA mismatch repair protein MutS [Enterococcus faecium P1986]
gi|424967297|ref|ZP_18381002.1| DNA mismatch repair protein MutS [Enterococcus faecium P1140]
gi|424975120|ref|ZP_18388305.1| DNA mismatch repair protein MutS [Enterococcus faecium P1137]
gi|424979695|ref|ZP_18392533.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV99]
gi|424982941|ref|ZP_18395554.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV69]
gi|424986647|ref|ZP_18399055.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV38]
gi|424990665|ref|ZP_18402870.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV26]
gi|424993879|ref|ZP_18405851.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV168]
gi|424998893|ref|ZP_18410554.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV165]
gi|425000837|ref|ZP_18412383.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV161]
gi|425004325|ref|ZP_18415642.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV102]
gi|425006966|ref|ZP_18418119.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV1]
gi|425012041|ref|ZP_18422892.1| DNA mismatch repair protein MutS [Enterococcus faecium E422]
gi|425012983|ref|ZP_18423736.1| DNA mismatch repair protein MutS [Enterococcus faecium E417]
gi|425019039|ref|ZP_18429427.1| DNA mismatch repair protein MutS [Enterococcus faecium C621]
gi|425021797|ref|ZP_18432022.1| DNA mismatch repair protein MutS [Enterococcus faecium C497]
gi|425023023|ref|ZP_18433165.1| DNA mismatch repair protein MutS [Enterococcus faecium C1904]
gi|425032504|ref|ZP_18437547.1| DNA mismatch repair protein MutS [Enterococcus faecium 515]
gi|425036542|ref|ZP_18441285.1| DNA mismatch repair protein MutS [Enterococcus faecium 514]
gi|425041873|ref|ZP_18446252.1| DNA mismatch repair protein MutS [Enterococcus faecium 511]
gi|425045602|ref|ZP_18449693.1| DNA mismatch repair protein MutS [Enterococcus faecium 510]
gi|425050658|ref|ZP_18454382.1| DNA mismatch repair protein MutS [Enterococcus faecium 509]
gi|425050767|ref|ZP_18454480.1| DNA mismatch repair protein MutS [Enterococcus faecium 506]
gi|430820940|ref|ZP_19439559.1| DNA mismatch repair protein mutS [Enterococcus faecium E0045]
gi|430828857|ref|ZP_19446969.1| DNA mismatch repair protein mutS [Enterococcus faecium E0269]
gi|430831899|ref|ZP_19449947.1| DNA mismatch repair protein mutS [Enterococcus faecium E0333]
gi|430847392|ref|ZP_19465230.1| DNA mismatch repair protein mutS [Enterococcus faecium E1133]
gi|430855669|ref|ZP_19473377.1| DNA mismatch repair protein mutS [Enterococcus faecium E1392]
gi|431544341|ref|ZP_19518637.1| DNA mismatch repair protein mutS [Enterococcus faecium E1731]
gi|431747155|ref|ZP_19535956.1| DNA mismatch repair protein mutS [Enterococcus faecium E2134]
gi|431749343|ref|ZP_19538085.1| DNA mismatch repair protein mutS [Enterococcus faecium E2297]
gi|431755857|ref|ZP_19544500.1| DNA mismatch repair protein mutS [Enterococcus faecium E2883]
gi|431767994|ref|ZP_19556436.1| DNA mismatch repair protein mutS [Enterococcus faecium E1321]
gi|431769501|ref|ZP_19557909.1| DNA mismatch repair protein mutS [Enterococcus faecium E1644]
gi|431773359|ref|ZP_19561684.1| DNA mismatch repair protein mutS [Enterococcus faecium E2369]
gi|431776458|ref|ZP_19564719.1| DNA mismatch repair protein mutS [Enterococcus faecium E2560]
gi|431779624|ref|ZP_19567817.1| DNA mismatch repair protein mutS [Enterococcus faecium E4389]
gi|431782570|ref|ZP_19570703.1| DNA mismatch repair protein mutS [Enterococcus faecium E6012]
gi|431784398|ref|ZP_19572437.1| DNA mismatch repair protein mutS [Enterococcus faecium E6045]
gi|35367172|gb|AAN85558.1| MutS [Enterococcus faecium]
gi|35367177|gb|AAN85560.1| MutS [Enterococcus faecium]
gi|68194464|gb|EAN08964.1| MutS 1 protein [Enterococcus faecium DO]
gi|257813029|gb|EEV41787.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,230,933]
gi|257817097|gb|EEV44425.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,502]
gi|257827020|gb|EEV53646.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,410]
gi|260078702|gb|EEW66404.1| DNA mismatch repair protein MutS [Enterococcus faecium TC 6]
gi|289162297|gb|EFD10157.1| DNA mismatch repair protein MutS [Enterococcus faecium D344SRF]
gi|291592524|gb|EFF24129.1| DNA mismatch repair protein MutS [Enterococcus faecium E1636]
gi|291599195|gb|EFF30227.1| DNA mismatch repair protein MutS [Enterococcus faecium U0317]
gi|291604257|gb|EFF33752.1| DNA mismatch repair protein MutS [Enterococcus faecium E1162]
gi|313589268|gb|EFR68113.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a01]
gi|313593571|gb|EFR72416.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133B]
gi|313595692|gb|EFR74537.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133A]
gi|313597668|gb|EFR76513.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133C]
gi|313641836|gb|EFS06416.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a04]
gi|313644882|gb|EFS09462.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0082]
gi|364094161|gb|EHM36360.1| DNA mismatch repair protein MutS [Enterococcus faecium E4453]
gi|378937190|gb|AFC62262.1| DNA mismatch repair protein MutS [Enterococcus faecium Aus0004]
gi|388532567|gb|AFK57759.1| DNA mismatch repair protein MutS [Enterococcus faecium DO]
gi|402919449|gb|EJX40048.1| DNA mismatch repair protein MutS [Enterococcus faecium S447]
gi|402923415|gb|EJX43709.1| DNA mismatch repair protein MutS [Enterococcus faecium R501]
gi|402928020|gb|EJX47926.1| DNA mismatch repair protein MutS [Enterococcus faecium R499]
gi|402933330|gb|EJX52776.1| DNA mismatch repair protein MutS [Enterococcus faecium R496]
gi|402936316|gb|EJX55502.1| DNA mismatch repair protein MutS [Enterococcus faecium R497]
gi|402936393|gb|EJX55575.1| DNA mismatch repair protein MutS [Enterococcus faecium R494]
gi|402942848|gb|EJX61399.1| DNA mismatch repair protein MutS [Enterococcus faecium R446]
gi|402945672|gb|EJX64007.1| DNA mismatch repair protein MutS [Enterococcus faecium P1986]
gi|402954652|gb|EJX72252.1| DNA mismatch repair protein MutS [Enterococcus faecium P1137]
gi|402954696|gb|EJX72293.1| DNA mismatch repair protein MutS [Enterococcus faecium P1140]
gi|402968307|gb|EJX84794.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV99]
gi|402972640|gb|EJX88827.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV69]
gi|402976003|gb|EJX91926.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV38]
gi|402979061|gb|EJX94750.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV26]
gi|402981569|gb|EJX97088.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV168]
gi|402981613|gb|EJX97129.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV165]
gi|402988352|gb|EJY03364.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV161]
gi|402989753|gb|EJY04664.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV102]
gi|402994866|gb|EJY09368.1| DNA mismatch repair protein MutS [Enterococcus faecium E422]
gi|402996021|gb|EJY10430.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV1]
gi|402999560|gb|EJY13744.1| DNA mismatch repair protein MutS [Enterococcus faecium C621]
gi|403002199|gb|EJY16203.1| DNA mismatch repair protein MutS [Enterococcus faecium E417]
gi|403005224|gb|EJY18955.1| DNA mismatch repair protein MutS [Enterococcus faecium C497]
gi|403011196|gb|EJY24524.1| DNA mismatch repair protein MutS [Enterococcus faecium C1904]
gi|403012748|gb|EJY25929.1| DNA mismatch repair protein MutS [Enterococcus faecium 515]
gi|403014315|gb|EJY27329.1| DNA mismatch repair protein MutS [Enterococcus faecium 514]
gi|403022766|gb|EJY35105.1| DNA mismatch repair protein MutS [Enterococcus faecium 509]
gi|403025273|gb|EJY37362.1| DNA mismatch repair protein MutS [Enterococcus faecium 511]
gi|403026675|gb|EJY38629.1| DNA mismatch repair protein MutS [Enterococcus faecium 510]
gi|403039968|gb|EJY51076.1| DNA mismatch repair protein MutS [Enterococcus faecium 506]
gi|430438988|gb|ELA49376.1| DNA mismatch repair protein mutS [Enterococcus faecium E0045]
gi|430480540|gb|ELA57714.1| DNA mismatch repair protein mutS [Enterococcus faecium E0333]
gi|430482680|gb|ELA59791.1| DNA mismatch repair protein mutS [Enterococcus faecium E0269]
gi|430537146|gb|ELA77496.1| DNA mismatch repair protein mutS [Enterococcus faecium E1133]
gi|430546724|gb|ELA86667.1| DNA mismatch repair protein mutS [Enterococcus faecium E1392]
gi|430592453|gb|ELB30468.1| DNA mismatch repair protein mutS [Enterococcus faecium E1731]
gi|430606969|gb|ELB44300.1| DNA mismatch repair protein mutS [Enterococcus faecium E2134]
gi|430611771|gb|ELB48847.1| DNA mismatch repair protein mutS [Enterococcus faecium E2297]
gi|430616356|gb|ELB53278.1| DNA mismatch repair protein mutS [Enterococcus faecium E2883]
gi|430629895|gb|ELB66279.1| DNA mismatch repair protein mutS [Enterococcus faecium E1321]
gi|430636606|gb|ELB72670.1| DNA mismatch repair protein mutS [Enterococcus faecium E2369]
gi|430636815|gb|ELB72869.1| DNA mismatch repair protein mutS [Enterococcus faecium E1644]
gi|430640777|gb|ELB76605.1| DNA mismatch repair protein mutS [Enterococcus faecium E2560]
gi|430641725|gb|ELB77520.1| DNA mismatch repair protein mutS [Enterococcus faecium E4389]
gi|430647207|gb|ELB82655.1| DNA mismatch repair protein mutS [Enterococcus faecium E6012]
gi|430649493|gb|ELB84869.1| DNA mismatch repair protein mutS [Enterococcus faecium E6045]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|384187773|ref|YP_005573669.1| DNA mismatch repair protein [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676090|ref|YP_006928461.1| DNA mismatch repair protein MutS [Bacillus thuringiensis Bt407]
gi|423385274|ref|ZP_17362530.1| DNA mismatch repair protein mutS [Bacillus cereus BAG1X1-2]
gi|423528369|ref|ZP_17504814.1| DNA mismatch repair protein mutS [Bacillus cereus HuB1-1]
gi|452200151|ref|YP_007480232.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|326941482|gb|AEA17378.1| DNA mismatch repair protein [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401635330|gb|EJS53085.1| DNA mismatch repair protein mutS [Bacillus cereus BAG1X1-2]
gi|402452032|gb|EJV83851.1| DNA mismatch repair protein mutS [Bacillus cereus HuB1-1]
gi|409175219|gb|AFV19524.1| DNA mismatch repair protein MutS [Bacillus thuringiensis Bt407]
gi|452105544|gb|AGG02484.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 890
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|228909593|ref|ZP_04073416.1| DNA mismatch repair protein mutS [Bacillus thuringiensis IBL 200]
gi|228849882|gb|EEM94713.1| DNA mismatch repair protein mutS [Bacillus thuringiensis IBL 200]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|254479232|ref|ZP_05092577.1| DNA mismatch repair protein MutS [Carboxydibrachium pacificum DSM
12653]
gi|214034833|gb|EEB75562.1| DNA mismatch repair protein MutS [Carboxydibrachium pacificum DSM
12653]
Length = 866
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 145/283 (51%), Gaps = 16/283 (5%)
Query: 580 AKAKVLELLRGLSSELQTKINILVF-----ASMLLVIGKAL-FAHVSEGRRRKWVFPALK 633
A+ K++EL L +E++ K+ + + A + +I + FA V+E K+V P
Sbjct: 518 AEEKLIELEYELFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETN--KYVKPI-- 573
Query: 634 DIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICA 690
++ + +K G P ++ V N +D+ + ++TGPN GKS+ +R +
Sbjct: 574 -VDYEDRIVIK-EGRHPVVETISDEGFVANDIDIGPENPIMIITGPNMAGKSTYMRQVAL 631
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
L+ G VPA A I D I + + D G+S+F VEMSE+ +I+ + TS+SL
Sbjct: 632 IVLMAQVGCFVPASYARIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSL 691
Query: 751 VLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809
+++DE+ RGT T G IA ++IE + + I + +TH H + L K++ +
Sbjct: 692 IILDEVGRGTSTYDGMSIAQAVIEYIHEKIKAKTLFATHYHELTKLEGKLRGVRNFNVSV 751
Query: 810 EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
E + + K+V G S + +K G+P +II+RA+++
Sbjct: 752 EEREDDIIFLHKIVPGGSDRSYGIQVSKLAGLPYSIIERAKEI 794
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K K+ +L R+GDFYE DA I +E A G E P AG P
Sbjct: 9 QYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTE-ERAPMAGVPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L + GY V I E+++ P++A+ R + PG+
Sbjct: 68 AADFYIDKLVKKGYKVAICEQLEDPSKAKGLVKRDVVRIYTPGT 111
>gi|383787109|ref|YP_005471678.1| DNA mismatch repair protein MutS [Fervidobacterium pennivorans DSM
9078]
gi|383109956|gb|AFG35559.1| DNA mismatch repair protein MutS [Fervidobacterium pennivorans DSM
9078]
Length = 829
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 7/187 (3%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+++LTGPN GKS+ +R I +L+ G VPA A IP FD I M + D + GKS
Sbjct: 606 MYILTGPNMSGKSTYIRQIGLIALMSQIGSFVPANFAKIPVFDRIFTRMGARDDISTGKS 665
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTH 788
+F EMSE+ I+ T SLVL+DE+ RGT T G IA +I E + N + C + +TH
Sbjct: 666 TFLTEMSEVALILNKATENSLVLLDEVGRGTSTFDGISIAWAISEYIYNEVKCKTVFATH 725
Query: 789 LHGIFSLPLK---IKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
+ L IKN + T DG + K+V+G+ S E A G+P++I
Sbjct: 726 FTELTELADMYPGIKNLTIEVRETP--DG-VIFLHKVVEGVADRSYGIEVAAIAGLPQSI 782
Query: 846 IQRAEDL 852
++RA+++
Sbjct: 783 VERAKEI 789
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 33 NLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP 92
NLK+ +K + + L K K+ +LL R+GDFYEA DA ++ + LN R
Sbjct: 16 NLKD--MKLTPMMKQYLDIKKKYQDSILLFRLGDFYEAFFDDALVVSKV--LNIVLTKRQ 71
Query: 93 ESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
E+ P AG P L L L GY V I E+++ P A+ R ++ PG+
Sbjct: 72 EA-PMAGIPYHALDNYLKKLVDGGYKVAICEQMEDPATAKGIVKREVTRVITPGT 125
>gi|430843136|ref|ZP_19461037.1| DNA mismatch repair protein mutS [Enterococcus faecium E1050]
gi|430497885|gb|ELA73902.1| DNA mismatch repair protein mutS [Enterococcus faecium E1050]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|402558903|ref|YP_006601627.1| DNA mismatch repair protein MutS [Bacillus thuringiensis HD-771]
gi|423359245|ref|ZP_17336748.1| DNA mismatch repair protein mutS [Bacillus cereus VD022]
gi|401085117|gb|EJP93363.1| DNA mismatch repair protein mutS [Bacillus cereus VD022]
gi|401787555|gb|AFQ13594.1| DNA mismatch repair protein MutS [Bacillus thuringiensis HD-771]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|229031399|ref|ZP_04187400.1| DNA mismatch repair protein mutS [Bacillus cereus AH1271]
gi|228729894|gb|EEL80873.1| DNA mismatch repair protein mutS [Bacillus cereus AH1271]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|229047452|ref|ZP_04193044.1| DNA mismatch repair protein mutS [Bacillus cereus AH676]
gi|229151970|ref|ZP_04280166.1| DNA mismatch repair protein mutS [Bacillus cereus m1550]
gi|228631525|gb|EEK88158.1| DNA mismatch repair protein mutS [Bacillus cereus m1550]
gi|228723896|gb|EEL75249.1| DNA mismatch repair protein mutS [Bacillus cereus AH676]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|228954046|ref|ZP_04116075.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229071266|ref|ZP_04204490.1| DNA mismatch repair protein mutS [Bacillus cereus F65185]
gi|229180046|ref|ZP_04307390.1| DNA mismatch repair protein mutS [Bacillus cereus 172560W]
gi|228603255|gb|EEK60732.1| DNA mismatch repair protein mutS [Bacillus cereus 172560W]
gi|228711887|gb|EEL63838.1| DNA mismatch repair protein mutS [Bacillus cereus F65185]
gi|228805612|gb|EEM52202.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLNQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|7188744|gb|AAF37851.1|AF227730_1 mismatch repair protein MutS [Sinorhizobium meliloti]
Length = 351
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+++LLTGPN GGKS+ LR +++ G VPA +A I D + + + D A G+
Sbjct: 94 AIWLLTGPNMGGKSTFLRQNALIAIMAQTGSFVPAAAAHIGVVDRLFSRVGASDDLARGR 153
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVST 787
S+F VEM E +I+ T RSLV++DEI RGT T G IA + +E L + C G+ +T
Sbjct: 154 STFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFAT 213
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ + M + DG + ++ G S + A+ G+P +++
Sbjct: 214 HFHELTVLSEKLVRLSNATMRVKEWDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVA 273
Query: 848 RAEDL 852
RA D+
Sbjct: 274 RARDV 278
>gi|30021861|ref|NP_833492.1| DNA mismatch repair protein MutS [Bacillus cereus ATCC 14579]
gi|44888188|sp|Q81A25.1|MUTS_BACCR RecName: Full=DNA mismatch repair protein MutS
gi|29897417|gb|AAP10693.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 14579]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|365924441|ref|ZP_09447204.1| DNA mismatch repair protein MutS [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420265396|ref|ZP_14767956.1| DNA mismatch repair protein MutS [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394428128|gb|EJF00719.1| DNA mismatch repair protein MutS [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 875
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 143/292 (48%), Gaps = 20/292 (6%)
Query: 577 GAKAKAKVLE--LLRGLSSELQTKINIL-----VFASMLLVIGKALFAHVSEGRRRKWVF 629
GA+ KA LE L + ++ +I L A++ +V G FA VSE R+ +V
Sbjct: 507 GAQGKATDLEYRLFVDIRERIKDQIKRLQRLAKAIAALDVVQG---FAVVSE--RQHFVM 561
Query: 630 PALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLL 685
P L IE +G + +G P + + S V N V M ++ L+TGPN GKS+ +
Sbjct: 562 PKL--IE-NGNDVEIKDGWHPVVQEVMGKQSYVPNDVIMPKDLNILLITGPNMSGKSTYM 618
Query: 686 RSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 745
R + ++ G VPA+SA +P FD I + + D G+S+F VEM E +
Sbjct: 619 RQLALTVVMAQIGCFVPADSAKLPIFDQIFTRIGAADDLIAGQSTFMVEMKEANQAIEHA 678
Query: 746 TSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAY 804
TS SL+L DEI RGT T G +A +IIE + D++ + STH H + L +
Sbjct: 679 TSNSLILFDEIGRGTATYDGMALAQAIIEYVHDHVHAKTLFSTHYHELTGLSESLPELEN 738
Query: 805 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 856
+G +G + K+ G +S AK G+P +++RA ++ A
Sbjct: 739 IHVGAIEKNGDLIFLHKMQPGPADKSYGVHVAKLAGMPAVLLKRATEILTAL 790
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K ++ L R+GDFYE DA L+E L + IP G P
Sbjct: 13 QYLKIKEQYSDAFLFYRLGDFYEMFYDDAIKGSQLLELT-LTTRNKNAADKIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P A+ R + PG+
Sbjct: 72 AAQNYIDILVEQGYKVAICEQMEDPKLAQGMVKREVIQLVTPGT 115
>gi|311992451|gb|ADQ26783.1| putative mismatch repair protein [Tetrahymena thermophila]
Length = 1389
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 99/190 (52%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + L+TGPN GGKS+LLR C A +L G +PA+S D I + + D
Sbjct: 1157 DNVTCMLVTGPNMGGKSTLLRQNCLAVILAQLGCFLPAKSFKTIIRDRIFCRIGASDRLL 1216
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
+GKS+F VEM E IV T++SLVL+DE+ RGT T G IA ++ L +N+ CL +
Sbjct: 1217 EGKSTFLVEMEETGDIVKEATNQSLVLLDELGRGTSTFDGVSIAYGVLRYLVENVKCLTL 1276
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP--TWKLVDGICRESLAFETAKREGVP 842
STH H + KN M +Y Q +K + G +S AK G+P
Sbjct: 1277 FSTHYHMLVDEFKLYKNVQSYVMDFDYCSQQKKIDFKYKYIKGSSEKSFGVNVAKMAGLP 1336
Query: 843 ETIIQRAEDL 852
+++I +A +
Sbjct: 1337 DSVIDKAHKM 1346
>gi|291538969|emb|CBL12080.1| DNA mismatch repair protein MutS [Roseburia intestinalis XB6B4]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 3/204 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPA SA I D I + + D A G+S+F
Sbjct: 628 IITGPNMAGKSTYMRQAALIVLMAQIGSFVPATSAKISIVDRIFTRVGASDDLASGQSTF 687
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVSTH 788
VEM+E+ +I+ TS SL+++DEI RGT T G IA +++E + N +G + +TH
Sbjct: 688 MVEMNEVANILRNATSNSLLVLDEIGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATH 747
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L K+ N + + V K+V G +S + AK GVP+++I+R
Sbjct: 748 YHELTELEGKLNNVHNYCIAVKEKGDDIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIER 807
Query: 849 AEDLYIACGVNCVMIAAREQPPPS 872
A+++ N + + P +
Sbjct: 808 AKEIVEELSANDITSVTKNITPAT 831
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGL--RPESIPKAGCPVVN 104
+ L+ K ++ +L R+GDFYE DA ++ + L G E P G P
Sbjct: 21 QYLKTKEEYKDCILFYRLGDFYEMFFDDAIVVSKELELTLTGKSCGAEERAPMCGVPYHA 80
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPE 164
+ L+ L NG+ V I E+V+ P A+ R + PG+
Sbjct: 81 VEGYLNKLVANGHKVAICEQVEDPKLAKGLVKREVIRIVTPGT---------------NT 125
Query: 165 PMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSR 209
M + S++ CI+ + + SL D T D VT++ T R
Sbjct: 126 DMQALDESKNNYIMCIVYLADKYGI-SLADISTGDYFVTEVDTER 169
>gi|257885710|ref|ZP_05665363.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,501]
gi|257821566|gb|EEV48696.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,501]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|184154989|ref|YP_001843329.1| DNA mismatch repair protein MutS [Lactobacillus fermentum IFO 3956]
gi|238692955|sp|B2GB17.1|MUTS_LACF3 RecName: Full=DNA mismatch repair protein MutS
gi|183226333|dbj|BAG26849.1| DNA mismatch repair protein MutS [Lactobacillus fermentum IFO 3956]
Length = 880
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 2/206 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + +++ G VPA+ A +P FD I + + D G+
Sbjct: 599 SILLITGPNMSGKSTYMRQLALTAVMAQMGCFVPAKRAQLPIFDQIFTRIGAADDLVSGE 658
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVST 787
S+F VEM E + + T+ SL+L DEI RGT T G +A +IIE + N +G + ST
Sbjct: 659 STFMVEMMEANNALQNATADSLILFDEIGRGTATYDGMALAQAIIEFVHNRVGAKTLFST 718
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L ++ + +G +G+ V K+ G +S AK G+P ++
Sbjct: 719 HYHELTALEGELDHLQNVHVGATEENGELVFLHKVTPGPADKSYGIHVAKLAGMPTPLLT 778
Query: 848 RAEDLYIAC-GVNCVMIAAREQPPPS 872
RA + + G + +R PP+
Sbjct: 779 RANQILTSLEGQETAAVPSRGVEPPA 804
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIP 96
K+ + + + K ++P L R+GDFYE DA L+E L + SIP
Sbjct: 4 KQTPMMEQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELT-LTSRSKSKDNSIP 62
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P + +D L GY V I E+++ P + R ++ PG+
Sbjct: 63 MCGVPHRAVDNYVDILIDKGYKVAICEQMEDPKTTKGMVKREVTRLVTPGT 113
>gi|218898869|ref|YP_002447280.1| DNA mismatch repair protein MutS [Bacillus cereus G9842]
gi|226723051|sp|B7ITM1.1|MUTS_BACC2 RecName: Full=DNA mismatch repair protein MutS
gi|218542997|gb|ACK95391.1| DNA mismatch repair protein MutS [Bacillus cereus G9842]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|47568274|ref|ZP_00238977.1| DNA mismatch repair protein MutS [Bacillus cereus G9241]
gi|47555102|gb|EAL13450.1| DNA mismatch repair protein MutS [Bacillus cereus G9241]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|335429545|ref|ZP_08556443.1| DNA mismatch repair protein MutS [Haloplasma contractile SSD-17B]
gi|334889555|gb|EGM27840.1| DNA mismatch repair protein MutS [Haloplasma contractile SSD-17B]
Length = 864
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 15/283 (5%)
Query: 577 GAKAKAKVLE--LLRGLSSELQTKINILVFASMLLVIGKAL--FAHVSEGRRRKWVFPAL 632
GA KA LE L + +++ +N L + + AL F+ VSE R +V P L
Sbjct: 512 GADEKAMSLEYELFVSIRDKVKQYMNELQKLAKRIAEIDALISFSLVSEENR--FVRPKL 569
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDMQ---SLFLLTGPNGGGKSSLLRSI 688
D + NG P + S V N V M L L+TGPN GKS+ +R +
Sbjct: 570 TD----KRHVDIKNGRHPVVEKVMKDSVYVENDVTMDGNTDLLLITGPNMSGKSTYMRQM 625
Query: 689 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748
+L G VPA+SA++P FD I + + D G+S+F VEM E + + T+
Sbjct: 626 ALTVILAQVGCFVPADSATLPIFDKIFTRIGASDDLISGQSTFMVEMLEANNAILNATAD 685
Query: 749 SLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807
SL++ DEI RGT T G +A SIIE + +NI + STH H + +L +K +
Sbjct: 686 SLIIFDEIGRGTATYDGMALAQSIIEYIHENIKAKTMFSTHYHELTNLEESLKRLKNVHV 745
Query: 808 GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +G+ K+ G +S + AK +P T+I+R+E
Sbjct: 746 KAKEDNGELTFLHKVEFGPTDKSYGIQVAKLAELPVTLIKRSE 788
>gi|229081021|ref|ZP_04213534.1| DNA mismatch repair protein mutS [Bacillus cereus Rock4-2]
gi|228702335|gb|EEL54808.1| DNA mismatch repair protein mutS [Bacillus cereus Rock4-2]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|229123283|ref|ZP_04252487.1| DNA mismatch repair protein mutS [Bacillus cereus 95/8201]
gi|228660059|gb|EEL15695.1| DNA mismatch repair protein mutS [Bacillus cereus 95/8201]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEDSLNQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|229174434|ref|ZP_04301966.1| DNA mismatch repair protein mutS [Bacillus cereus MM3]
gi|228608994|gb|EEK66284.1| DNA mismatch repair protein mutS [Bacillus cereus MM3]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLGQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|431208718|ref|ZP_19500931.1| DNA mismatch repair protein mutS [Enterococcus faecium E1620]
gi|430570724|gb|ELB09664.1| DNA mismatch repair protein mutS [Enterococcus faecium E1620]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|423615969|ref|ZP_17591803.1| DNA mismatch repair protein mutS [Bacillus cereus VD115]
gi|401260506|gb|EJR66679.1| DNA mismatch repair protein mutS [Bacillus cereus VD115]
Length = 890
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|422861714|ref|ZP_16908354.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK330]
gi|327467947|gb|EGF13437.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK330]
Length = 849
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALEESLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|312384757|gb|EFR29409.1| hypothetical protein AND_01583 [Anopheles darlingi]
Length = 1180
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 102/192 (53%), Gaps = 8/192 (4%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
SL LLTGPN GGKS+L+R + +++ G +PAE + D I + + D G
Sbjct: 951 SLVLLTGPNMGGKSTLMRQVGLLAVMAQIGSRIPAERCRMTLVDRIFTRLGASDDIMAGH 1010
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788
S+F VE++E +I+ TS SLVL+DE+ RGT T GT +AG+++ L + C + STH
Sbjct: 1011 STFLVELNETSAILKHATSDSLVLLDELGRGTATYDGTAVAGAVVHFLADRQCRTLFSTH 1070
Query: 789 LHGI---FSLPLKIKNAAYKAM-GTEYLDGQTVPT----WKLVDGICRESLAFETAKREG 840
H + F +I M E D T T +K DG C +S F AK G
Sbjct: 1071 YHNLVDSFHADPRIALGHMACMVENEEGDDPTQETVTFLYKYADGPCPKSYGFNAAKLAG 1130
Query: 841 VPETIIQRAEDL 852
+P II+RA +L
Sbjct: 1131 MPMAIIKRAYEL 1142
>gi|228966712|ref|ZP_04127756.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228792811|gb|EEM40369.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 793
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 502 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 561
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 562 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 621
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 622 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 678
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 679 LIARAKEV 686
>gi|229146341|ref|ZP_04274712.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST24]
gi|228636974|gb|EEK93433.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST24]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|149921078|ref|ZP_01909537.1| DNA mismatch repair protein [Plesiocystis pacifica SIR-1]
gi|149818082|gb|EDM77539.1| DNA mismatch repair protein [Plesiocystis pacifica SIR-1]
Length = 930
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 1/198 (0%)
Query: 654 DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
D + H +VD L+++TGPN GGKS+++R + ++L G VPA +A + D
Sbjct: 648 DTELAAGTHGSVDAARLWVVTGPNMGGKSTIMRQVALIAILAHVGSFVPAAAARVGLIDR 707
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D G+S+F VEM E IV + RSLVL+DEI RGT T G +A +I
Sbjct: 708 VFTRVGAADDLGRGESTFMVEMRETAQIVAQASPRSLVLLDEIGRGTATFDGLALAWAIT 767
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E L D +GC + +TH H + L ++ + G+ V ++ G S
Sbjct: 768 EHLHDQVGCRTMFATHYHELCGLEARLAGVRNVHVAVHEHRGKIVFLHRVEQGAAGRSYG 827
Query: 833 FETAKREGVPETIIQRAE 850
+ + G+P +++RA+
Sbjct: 828 IQVGRLAGLPARLLRRAQ 845
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL--VEYAGLNPFGGLRPESIPKAGCPVVN 104
+ L K ++P +++ R+GDFYE DA + V + + +P AG P
Sbjct: 3 QYLDIKRRYPDAIVMFRMGDFYELFFEDAVTVGPVLDIAVTTRDKKAEDPVPMAGVPYHA 62
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
+ L L GY V I E+++ P +AR RK
Sbjct: 63 IGGYLRTLVERGYKVAIAEQMESPEEARKRK 93
>gi|423561823|ref|ZP_17538099.1| DNA mismatch repair protein mutS [Bacillus cereus MSX-A1]
gi|401202080|gb|EJR08945.1| DNA mismatch repair protein mutS [Bacillus cereus MSX-A1]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|424909279|ref|ZP_18332656.1| DNA mismatch repair protein MutS [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392845310|gb|EJA97832.1| DNA mismatch repair protein MutS [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 904
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 2/213 (0%)
Query: 641 NCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLM 700
L+ P+ + + SAV N +++LLTGPN GGKS+ LR ++L G
Sbjct: 622 QALRRQSAGPFIANNCDLSAV-NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSF 680
Query: 701 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT 760
VPAE+A I D + + + D A G+S+F VEM E +I+ T RSLV++DEI RGT
Sbjct: 681 VPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGT 740
Query: 761 ETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 819
T G IA + +E L + C G+ +TH H + L K+ + M + +G +
Sbjct: 741 ATFDGLSIAWASVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGHVIFL 800
Query: 820 WKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
++ G S + A+ G+P +++ RA ++
Sbjct: 801 HEVGPGAADRSYGIQVARLAGLPASVVDRAREV 833
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA G L G IP G PV
Sbjct: 25 QYIEIKANNTGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVPVHA 84
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+V+ P +A+ R S+ +
Sbjct: 85 ADDYLQKLILRGYRVAVCEQVEDPAEAKKRGSKSV 119
>gi|229191894|ref|ZP_04318864.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 10876]
gi|228591445|gb|EEK49294.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 10876]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|430850781|ref|ZP_19468538.1| DNA mismatch repair protein mutS [Enterococcus faecium E1185]
gi|430535140|gb|ELA75563.1| DNA mismatch repair protein mutS [Enterococcus faecium E1185]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|408356790|ref|YP_006845321.1| DNA mismatch repair protein MutS [Amphibacillus xylanus NBRC 15112]
gi|407727561|dbj|BAM47559.1| DNA mismatch repair protein MutS [Amphibacillus xylanus NBRC 15112]
Length = 856
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+ L+TGPN GKS+ +R + ++ G VPA+ A +P FD I + + D G+
Sbjct: 601 QILLITGPNMSGKSTYMRQVALIVIMAQIGCFVPADKAVLPIFDKIFTRIGASDDLVGGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + +T T SL+L+DEI RGT T G IA +I+E + D+IG + ST
Sbjct: 661 STFMVEMLEAKHALTYATKNSLILLDEIGRGTSTYDGMAIAQAIMEYVHDHIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + SL ++KN +A E +G+ V ++ G +S AK +P+
Sbjct: 721 HYHELTSLSEQLTRLKNVHVRA---EEFEGRVVFLHQIRKGPADKSYGIHVAKLAELPDV 777
Query: 845 IIQRA 849
+I+RA
Sbjct: 778 LIERA 782
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ L R+GDFYE DA L G E IP G P +
Sbjct: 10 QYLKIKAQHKDSFLFFRLGDFYELFFDDAVKAARELEITLTSRDGGGKERIPMCGVPHHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +L GY V I E+V+ P +A+ R + PG+
Sbjct: 70 ATNYIKNLVEKGYKVAICEQVEDPKEAKGVVKREVVQLITPGT 112
>gi|416133406|ref|ZP_11598107.1| DNA mismatch repair protein MutS [Enterococcus faecium E4452]
gi|364092929|gb|EHM35246.1| DNA mismatch repair protein MutS [Enterococcus faecium E4452]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|293567847|ref|ZP_06679188.1| DNA mismatch repair protein MutS [Enterococcus faecium E1071]
gi|294619660|ref|ZP_06699078.1| DNA mismatch repair protein MutS [Enterococcus faecium E1679]
gi|406579254|ref|ZP_11054486.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD4E]
gi|406581627|ref|ZP_11056764.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD3E]
gi|406584416|ref|ZP_11059447.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD2E]
gi|406589917|ref|ZP_11064331.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD1E]
gi|410938032|ref|ZP_11369890.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD5E]
gi|424779752|ref|ZP_18206649.1| DNA mismatch repair protein MutS [Enterococcus faecium V689]
gi|424964630|ref|ZP_18378706.1| DNA mismatch repair protein MutS [Enterococcus faecium P1190]
gi|424972028|ref|ZP_18385422.1| DNA mismatch repair protein MutS [Enterococcus faecium P1139]
gi|424977413|ref|ZP_18390428.1| DNA mismatch repair protein MutS [Enterococcus faecium P1123]
gi|425038972|ref|ZP_18443548.1| DNA mismatch repair protein MutS [Enterococcus faecium 513]
gi|425061613|ref|ZP_18464828.1| DNA mismatch repair protein MutS [Enterococcus faecium 503]
gi|427397019|ref|ZP_18889645.1| DNA mismatch repair protein mutS [Enterococcus durans FB129-CNAB-4]
gi|430861346|ref|ZP_19478903.1| DNA mismatch repair protein mutS [Enterococcus faecium E1573]
gi|430952593|ref|ZP_19486399.1| DNA mismatch repair protein mutS [Enterococcus faecium E1576]
gi|431000726|ref|ZP_19488207.1| DNA mismatch repair protein mutS [Enterococcus faecium E1578]
gi|431234177|ref|ZP_19502946.1| DNA mismatch repair protein mutS [Enterococcus faecium E1622]
gi|431255693|ref|ZP_19504816.1| DNA mismatch repair protein mutS [Enterococcus faecium E1623]
gi|431303464|ref|ZP_19508311.1| DNA mismatch repair protein mutS [Enterococcus faecium E1626]
gi|431697298|ref|ZP_19524835.1| DNA mismatch repair protein mutS [Enterococcus faecium E1904]
gi|447911658|ref|YP_007393070.1| DNA mismatch repair protein MutS [Enterococcus faecium NRRL B-2354]
gi|291589432|gb|EFF21239.1| DNA mismatch repair protein MutS [Enterococcus faecium E1071]
gi|291594097|gb|EFF25553.1| DNA mismatch repair protein MutS [Enterococcus faecium E1679]
gi|402924882|gb|EJX45066.1| DNA mismatch repair protein MutS [Enterococcus faecium V689]
gi|402946224|gb|EJX64513.1| DNA mismatch repair protein MutS [Enterococcus faecium P1190]
gi|402956777|gb|EJX74212.1| DNA mismatch repair protein MutS [Enterococcus faecium P1139]
gi|402966003|gb|EJX82676.1| DNA mismatch repair protein MutS [Enterococcus faecium P1123]
gi|403017982|gb|EJY30699.1| DNA mismatch repair protein MutS [Enterococcus faecium 513]
gi|403040830|gb|EJY51878.1| DNA mismatch repair protein MutS [Enterococcus faecium 503]
gi|404455559|gb|EKA02403.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD4E]
gi|404459393|gb|EKA05759.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD3E]
gi|404464117|gb|EKA09678.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD2E]
gi|404470103|gb|EKA14775.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD1E]
gi|410733671|gb|EKQ75594.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD5E]
gi|425722345|gb|EKU85240.1| DNA mismatch repair protein mutS [Enterococcus durans FB129-CNAB-4]
gi|430550172|gb|ELA89977.1| DNA mismatch repair protein mutS [Enterococcus faecium E1573]
gi|430557192|gb|ELA96660.1| DNA mismatch repair protein mutS [Enterococcus faecium E1576]
gi|430562385|gb|ELB01617.1| DNA mismatch repair protein mutS [Enterococcus faecium E1578]
gi|430573203|gb|ELB12033.1| DNA mismatch repair protein mutS [Enterococcus faecium E1622]
gi|430577891|gb|ELB16471.1| DNA mismatch repair protein mutS [Enterococcus faecium E1623]
gi|430580105|gb|ELB18585.1| DNA mismatch repair protein mutS [Enterococcus faecium E1626]
gi|430597568|gb|ELB35359.1| DNA mismatch repair protein mutS [Enterococcus faecium E1904]
gi|445187367|gb|AGE29009.1| DNA mismatch repair protein MutS [Enterococcus faecium NRRL B-2354]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|228959976|ref|ZP_04121641.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229111242|ref|ZP_04240796.1| DNA mismatch repair protein mutS [Bacillus cereus Rock1-15]
gi|229129046|ref|ZP_04258019.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-Cer4]
gi|228654283|gb|EEL10148.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-Cer4]
gi|228672236|gb|EEL27526.1| DNA mismatch repair protein mutS [Bacillus cereus Rock1-15]
gi|228799719|gb|EEM46671.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|319789352|ref|YP_004150985.1| DNA mismatch repair protein MutS [Thermovibrio ammonificans HB-1]
gi|317113854|gb|ADU96344.1| DNA mismatch repair protein MutS [Thermovibrio ammonificans HB-1]
Length = 860
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 143/301 (47%), Gaps = 8/301 (2%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL 615
V E F T +++E E+ A + + EL + L + + + +V + L L
Sbjct: 477 VNAERFITPELKEFEEKVLSAQERIEKIEYELFKELRRFISDRASRIVETAEKLATIDVL 536
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHN--TVDMQSLFLL 673
+ R + P + D + G P + + + N T++ + FLL
Sbjct: 537 LSFAKVARDFNYTRPEVGDF----YEVEIVQGRHPVLERSLQEEFIPNDTTLNREQFFLL 592
Query: 674 -TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
TGPN GGKS LR + G VPAESA I D I + + DS + G S+F
Sbjct: 593 ITGPNMGGKSVFLRQTALIVAMAQMGSFVPAESARIGVVDRIFTRVGASDSLSRGLSTFM 652
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHG 791
+EM E +I+ T +SL+++DEI RGT T G IA +++E + N IG + +TH H
Sbjct: 653 MEMVETANILKNATEKSLIILDEIGRGTSTYDGMSIARAVVEYICNRIGAKTLFATHYHE 712
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L +++ + + +DG+ V T ++ G +S A+ G+PE +++RA +
Sbjct: 713 LTELEGQVRGVKNYHVCVKEVDGKVVFTHRVKPGPSEKSYGIHVAELAGLPEEVVERARE 772
Query: 852 L 852
+
Sbjct: 773 I 773
Score = 39.7 bits (91), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K ++ +L+ R+GDFYE DA + +E A G E P G P
Sbjct: 11 QYLELKEQYKDAILMFRMGDFYEMFFEDAEVAARELEIALTKRSFGKGGEKAPMCGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGP 128
+ + L + GY V + E+++ P
Sbjct: 71 AVEGYIAKLVKKGYKVAVCEQLEEP 95
>gi|260663384|ref|ZP_05864275.1| DNA mismatch repair protein MutS [Lactobacillus fermentum 28-3-CHN]
gi|260552236|gb|EEX25288.1| DNA mismatch repair protein MutS [Lactobacillus fermentum 28-3-CHN]
Length = 880
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 2/206 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + +++ G VPA+ A +P FD I + + D G+
Sbjct: 599 SILLITGPNMSGKSTYMRQLALTAVMAQMGCFVPAKRAQLPIFDQIFTRIGAADDLVSGE 658
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVST 787
S+F VEM E + + T+ SL+L DEI RGT T G +A +IIE + N +G + ST
Sbjct: 659 STFMVEMMEANNALQNATADSLILFDEIGRGTATYDGMALAQAIIEFVHNRVGAKTLFST 718
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L ++ + +G +G+ V K+ G +S AK G+P ++
Sbjct: 719 HYHELTALEGELDHLQNVHVGATEENGELVFLHKVTPGPADKSYGIHVAKLAGMPTPLLT 778
Query: 848 RAEDLYIAC-GVNCVMIAAREQPPPS 872
RA + + G + +R PP+
Sbjct: 779 RANQILTSLEGQETAAVPSRGVEPPA 804
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIP 96
K+ + + + K ++P L R+GDFYE DA L+E L + IP
Sbjct: 4 KQTPMMEQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELT-LTSRSKSKDNPIP 62
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P + +D L GY V I E+++ P + R ++ PG+
Sbjct: 63 MCGVPHRAVDNYVDILIDKGYKVAICEQMEDPKTTKGMVKREVTRLVTPGT 113
>gi|228935066|ref|ZP_04097896.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824636|gb|EEM70438.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVENPKTAKGVVRREVVQLITPGT 106
>gi|406669522|ref|ZP_11076792.1| DNA mismatch repair protein MutS [Facklamia ignava CCUG 37419]
gi|405583218|gb|EKB57186.1| DNA mismatch repair protein MutS [Facklamia ignava CCUG 37419]
Length = 851
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 20/317 (6%)
Query: 547 PAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 606
P K E F T +++E + A K+ A +L L ++ I L +
Sbjct: 480 PRYIRKQTLANSERFFTDELKEIEQTILNAKEKSTALEYQLFVELREQILNYIEPLQQLA 539
Query: 607 MLLVIGKALFAHVSEGRRRKWVFPAL----KDIELDGA------NCLKMNGLSPYWFDAA 656
M + L A S + +V P + KD+E+ + +K P F +
Sbjct: 540 MQVAELDVLSAFASLADQEDYVQPQIVSQPKDVEIIQSRHPVVEKLIKKTNFVPNDFSST 599
Query: 657 EGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML 716
+ +H +LTGPN GKS+ +R I +L G VPA SA +P D I
Sbjct: 600 SENYLH---------ILTGPNMSGKSTYMRQIAYCFILCQIGSFVPATSAKLPIIDKIFT 650
Query: 717 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776
+ S D G+S+F VEM E + + T+ SL+L DE+ RGT T G +A II +
Sbjct: 651 RIGSADDTTLGQSTFMVEMMETQVALKEATANSLLLFDELGRGTATYDGMALAEGIIRYI 710
Query: 777 -DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
I CL I STH H + L + +G+E L+G+ V K+++G S
Sbjct: 711 AQEIQCLTIFSTHYHELTRLDSDLPAVRNIHVGSEELNGELVFLHKVLEGPSDRSYGIHV 770
Query: 836 AKREGVPETIIQRAEDL 852
A+ G+P+ +I+++ ++
Sbjct: 771 AQIAGLPKQVIRQSAEI 787
>gi|423611988|ref|ZP_17587849.1| DNA mismatch repair protein mutS [Bacillus cereus VD107]
gi|401246995|gb|EJR53339.1| DNA mismatch repair protein mutS [Bacillus cereus VD107]
Length = 889
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|291550404|emb|CBL26666.1| DNA mismatch repair protein MutS [Ruminococcus torques L2-14]
Length = 888
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R +L+ G VPAESA+I D I + + D A G+S+F
Sbjct: 622 IITGPNMAGKSTYMRQTALIALMAQIGSFVPAESANICLSDRIFTRVGASDDLASGQSTF 681
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTH 788
VEM+E+ +I+ TS+SL+++DEI RGT T G IA +++E + + LG + +TH
Sbjct: 682 MVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVVEYISDSKLLGAKTLFATH 741
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L KI N + + V K+V G +S + AK GVP+ +I R
Sbjct: 742 YHELTELEGKIDNVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDLVISR 801
Query: 849 AEDL 852
A+++
Sbjct: 802 AKEI 805
>gi|229162704|ref|ZP_04290661.1| DNA mismatch repair protein mutS [Bacillus cereus R309803]
gi|228620586|gb|EEK77455.1| DNA mismatch repair protein mutS [Bacillus cereus R309803]
Length = 890
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|218232426|ref|YP_002368572.1| DNA mismatch repair protein MutS [Bacillus cereus B4264]
gi|226723052|sp|B7HDP4.1|MUTS_BACC4 RecName: Full=DNA mismatch repair protein MutS
gi|218160383|gb|ACK60375.1| DNA mismatch repair protein MutS [Bacillus cereus B4264]
Length = 890
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|431439105|ref|ZP_19513286.1| DNA mismatch repair protein mutS [Enterococcus faecium E1630]
gi|431760154|ref|ZP_19548757.1| DNA mismatch repair protein mutS [Enterococcus faecium E3346]
gi|430586780|gb|ELB25028.1| DNA mismatch repair protein mutS [Enterococcus faecium E1630]
gi|430625258|gb|ELB61906.1| DNA mismatch repair protein mutS [Enterococcus faecium E3346]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|326403122|ref|YP_004283203.1| DNA mismatch repair protein MutS [Acidiphilium multivorum AIU301]
gi|325049983|dbj|BAJ80321.1| DNA mismatch repair protein MutS [Acidiphilium multivorum AIU301]
Length = 882
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 101/200 (50%), Gaps = 4/200 (2%)
Query: 661 VHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
+ N D+ + L LLTGPN GKS+ LR +L GL VPAE A I D +
Sbjct: 611 IANDADLSPERRLMLLTGPNMAGKSTFLRQNALVIILAQAGLPVPAEQARIGLVDRLFSR 670
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL- 776
+ + D A G+S+F VEM E SI+ RS V+IDEI RGT T G IA +++E L
Sbjct: 671 VGAADDLAAGRSTFMVEMIETASILNQAGPRSFVIIDEIGRGTGTRDGLAIAQAVLEALH 730
Query: 777 DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
+I C I +TH H + L + M + G V ++++G S A
Sbjct: 731 GSIRCRSIFATHFHDLVQLGAALPRLRPCTMRVKSWRGSVVFLHEVIEGAAERSWGVHVA 790
Query: 837 KREGVPETIIQRAEDLYIAC 856
K G+PE +I+RA+ L A
Sbjct: 791 KLAGLPEPVIRRADALLRAA 810
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ Q K+ +P ++ R+GDFYE DA ++ A L G + E I G PV
Sbjct: 15 QWFQAKADYPDALIFFRMGDFYELFFEDAEAASAALDIA-LTARGTHQGEPIAMCGVPVS 73
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L R G+ V + E+V+ P A++R + +
Sbjct: 74 QRDTYLTRLIRRGFRVAVAEQVEAPEAAKARGGKAL 109
>gi|228928819|ref|ZP_04091851.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228830626|gb|EEM76231.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|229098238|ref|ZP_04229185.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-29]
gi|229117255|ref|ZP_04246633.1| DNA mismatch repair protein mutS [Bacillus cereus Rock1-3]
gi|228666155|gb|EEL21619.1| DNA mismatch repair protein mutS [Bacillus cereus Rock1-3]
gi|228685136|gb|EEL39067.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-29]
Length = 884
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 4 QYLKVKADYEDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|448500204|ref|ZP_21611683.1| DNA mismatch repair protein MutS [Halorubrum coriense DSM 10284]
gi|445696926|gb|ELZ49005.1| DNA mismatch repair protein MutS [Halorubrum coriense DSM 10284]
Length = 942
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 6/221 (2%)
Query: 625 RKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ--SLFLLTGPNGGGKS 682
R +V P D+ D A +++ G + AE + V N D+ S+ ++TGPN GKS
Sbjct: 613 RDYVRP---DLRADPAAGVEIEGGRHPVVERAEDAFVPNDADLPRGSVAVITGPNMSGKS 669
Query: 683 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 742
+ +RS+ A +L G VPA++A++P FD + + + D A G+S+F EMSE+ I+
Sbjct: 670 TYMRSVALAVVLAQTGSFVPAQAAALPVFDRVFTRVGASDDIAGGQSTFMREMSELTEIL 729
Query: 743 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKN 801
+ SLVL+DE+ RGT T G IA + E L D +G + +TH HG+ L + +
Sbjct: 730 HDADADSLVLLDEVGRGTATTDGRAIARAAAEFLHDELGATALFATHYHGLTDLAEERER 789
Query: 802 AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
DG ++V G S E A+ GVP
Sbjct: 790 VFNLHFTATREDGDVTFLHRVVPGASLSSYGVEVAELAGVP 830
>gi|430853214|ref|ZP_19470944.1| DNA mismatch repair protein mutS [Enterococcus faecium E1258]
gi|430541036|gb|ELA81213.1| DNA mismatch repair protein mutS [Enterococcus faecium E1258]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|422853249|ref|ZP_16899913.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK160]
gi|325697261|gb|EGD39147.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK160]
Length = 849
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALENSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|228992457|ref|ZP_04152385.1| DNA mismatch repair protein mutS [Bacillus pseudomycoides DSM
12442]
gi|228767278|gb|EEM15913.1| DNA mismatch repair protein mutS [Bacillus pseudomycoides DSM
12442]
Length = 906
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 617 DVFLITGPNMSGKSTYMRQLALITVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 676
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 677 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 736
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 737 HYHELTVLEESLEQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 793
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 794 LIARAKEV 801
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K+ + L R+GDFYE I A +E + GG + IP G P
Sbjct: 26 QYLKVKADYQDAFLFFRLGDFYEMFFEDAIKAAHELEITLTSRDGG-SSDRIPMCGVPYH 84
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 85 AAKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 128
>gi|206977880|ref|ZP_03238768.1| DNA mismatch repair protein MutS [Bacillus cereus H3081.97]
gi|217961190|ref|YP_002339758.1| DNA mismatch repair protein MutS [Bacillus cereus AH187]
gi|375285691|ref|YP_005106130.1| DNA mismatch repair protein MutS [Bacillus cereus NC7401]
gi|423353471|ref|ZP_17331098.1| DNA mismatch repair protein mutS [Bacillus cereus IS075]
gi|423374434|ref|ZP_17351772.1| DNA mismatch repair protein mutS [Bacillus cereus AND1407]
gi|423567336|ref|ZP_17543583.1| DNA mismatch repair protein mutS [Bacillus cereus MSX-A12]
gi|226723053|sp|B7HLA3.1|MUTS_BACC7 RecName: Full=DNA mismatch repair protein MutS
gi|206743880|gb|EDZ55299.1| DNA mismatch repair protein MutS [Bacillus cereus H3081.97]
gi|217065927|gb|ACJ80177.1| DNA mismatch repair protein MutS [Bacillus cereus AH187]
gi|358354218|dbj|BAL19390.1| DNA mismatch repair protein MutS [Bacillus cereus NC7401]
gi|401089284|gb|EJP97455.1| DNA mismatch repair protein mutS [Bacillus cereus IS075]
gi|401094346|gb|EJQ02428.1| DNA mismatch repair protein mutS [Bacillus cereus AND1407]
gi|401214424|gb|EJR21154.1| DNA mismatch repair protein mutS [Bacillus cereus MSX-A12]
Length = 892
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LITRAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|65321095|ref|ZP_00394054.1| COG0249: Mismatch repair ATPase (MutS family) [Bacillus anthracis
str. A2012]
gi|229186008|ref|ZP_04313178.1| DNA mismatch repair protein mutS [Bacillus cereus BGSC 6E1]
gi|228597427|gb|EEK55077.1| DNA mismatch repair protein mutS [Bacillus cereus BGSC 6E1]
Length = 886
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|293556850|ref|ZP_06675411.1| DNA mismatch repair protein MutS [Enterococcus faecium E1039]
gi|291600934|gb|EFF31225.1| DNA mismatch repair protein MutS [Enterococcus faecium E1039]
Length = 881
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR--PESIPKAGCPVVN 104
+ L K+++ L R+GDFYE DA + L R E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFHEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHHA 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 73 AQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|227514527|ref|ZP_03944576.1| DNA mismatch repair protein MutS [Lactobacillus fermentum ATCC
14931]
gi|385812095|ref|YP_005848486.1| DNA mismatch repair protein mutS [Lactobacillus fermentum CECT
5716]
gi|227087084|gb|EEI22396.1| DNA mismatch repair protein MutS [Lactobacillus fermentum ATCC
14931]
gi|299782994|gb|ADJ40992.1| DNA mismatch repair protein mutS [Lactobacillus fermentum CECT
5716]
Length = 873
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 2/206 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
S+ L+TGPN GKS+ +R + +++ G VPA+ A +P FD I + + D G+
Sbjct: 592 SILLITGPNMSGKSTYMRQLALTAVMAQMGCFVPAKRAQLPIFDQIFTRIGAADDLVSGE 651
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVST 787
S+F VEM E + + T+ SL+L DEI RGT T G +A +IIE + N +G + ST
Sbjct: 652 STFMVEMMEANNALQNATADSLILFDEIGRGTATYDGMALAQAIIEFVHNRVGAKTLFST 711
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L ++ + +G +G+ V K+ G +S AK G+P ++
Sbjct: 712 HYHELTALEGELDHLQNVHVGATEENGELVFLHKVTPGPADKSYGIHVAKLAGMPTPLLT 771
Query: 848 RAEDLYIAC-GVNCVMIAAREQPPPS 872
RA + + G + +R PP+
Sbjct: 772 RANQILTSLEGQETAAVPSRGVEPPA 797
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L R+GDFYE DA L+E L + IP G P +
Sbjct: 7 RVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELT-LTSRSKSKDNPIPMCGVPHRAVD 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+D L GY V I E+++ P + R ++ PG+
Sbjct: 66 NYVDILIDKGYKVAICEQMEDPKTTKGMVKREVTRLVTPGT 106
>gi|212639351|ref|YP_002315871.1| DNA mismatch repair protein MutS [Anoxybacillus flavithermus WK1]
gi|212560831|gb|ACJ33886.1| Mismatch repair ATPase (MutS family) [Anoxybacillus flavithermus
WK1]
Length = 854
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 7/189 (3%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R I +++ G VPAE A +P FD + + + D G
Sbjct: 597 REMLLITGPNMSGKSTYMRQIALTAIMAQIGCFVPAEEAILPIFDQVFTRIGAADDLVAG 656
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R + T SL+L DEI RGT T G +A ++IE + D IG + S
Sbjct: 657 QSTFMVEMLEARHAIVHATQNSLILFDEIGRGTSTYDGMALAQAMIEYIHDRIGAKTLFS 716
Query: 787 THLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
TH H + +L ++KN A+ +G + K+ +G +S A+ +P
Sbjct: 717 THYHELTALEQQLPRLKNVHVSAIEE---NGNVIFLHKIKEGPADKSYGIHVAQLAKLPL 773
Query: 844 TIIQRAEDL 852
+IQRAE +
Sbjct: 774 DLIQRAEQI 782
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L KS++ L R+GDFYE DA + L G E +P G P +
Sbjct: 9 QYLAIKSQYKDAFLFFRLGDFYEMFFEDAIKASQELEITLTSRDGGGEERVPMCGVPYHS 68
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+V+ P A+ R + PG+
Sbjct: 69 AAMYIERLIEKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 111
>gi|52141719|ref|YP_085110.1| DNA mismatch repair protein MutS [Bacillus cereus E33L]
gi|81686627|sp|Q636Q7.1|MUTS_BACCZ RecName: Full=DNA mismatch repair protein MutS
gi|51975188|gb|AAU16738.1| DNA mismatch repair protein, MutS family [Bacillus cereus E33L]
Length = 894
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|315121913|ref|YP_004062402.1| DNA mismatch repair protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495315|gb|ADR51914.1| DNA mismatch repair protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 912
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 145/302 (48%), Gaps = 17/302 (5%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+TL++ + R A +A + LE LS + + L AS ++ + A +
Sbjct: 535 FTTLELIDLENRITNATNRALSIELEAFETLSKAIIEQSESLNDASKVIDVIDVSIALTT 594
Query: 621 EGRRRKWVFPALKD----IELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
R + + P + D I DG + LK P+ + + S + + + L+
Sbjct: 595 LAREQNYCRPIVDDSTKFIVKDGRHPVVEKTLKYQSSKPFITNDCDLSCSDDKKNGK-LW 653
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR ++ G VPA S I D + + S D+ A G+S+F
Sbjct: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASSVHIGIVDKLFSRVGSADNLASGRSTF 713
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
VEM E SI+ T++S V++DEI RGT T G IA + IE L I C G+++TH H
Sbjct: 714 MVEMIETASILNQATNQSFVILDEIGRGTSTLDGLSIAWATIEYLHEINLCRGLLATHFH 773
Query: 791 GIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
+ L + NA + +E +G V K++ GI S + K G+P ++I
Sbjct: 774 ELTDLSKSLARFHNATLQV--SESAEG-IVFLHKVIPGIADHSYGIQVGKLAGLPPSVIS 830
Query: 848 RA 849
RA
Sbjct: 831 RA 832
Score = 46.6 bits (109), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ KS P +L R+GDFYE DA I G L G + IP G PV
Sbjct: 31 QYIEIKSINPDSLLFYRMGDFYELFFEDAIIASRCLGITLTKRGKHLGKDIPMCGVPVHT 90
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 137
+ L + G+ + + E+++ P +A+ R +
Sbjct: 91 SNHYIQKLIKIGHRIALCEQIETPLEAKQRDKK 123
>gi|49478366|ref|YP_037830.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|81696708|sp|Q6HF46.1|MUTS_BACHK RecName: Full=DNA mismatch repair protein MutS
gi|49329922|gb|AAT60568.1| DNA mismatch repair protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 890
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|329896376|ref|ZP_08271475.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC3088]
gi|328921796|gb|EGG29167.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC3088]
Length = 860
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 101/187 (54%), Gaps = 3/187 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ + + L+TGPN GGKS+ +R I +L+ G VPAE+A + D I + S D A
Sbjct: 611 NQREMLLITGPNMGGKSTYMRQIALIALMAHVGSYVPAEAAHLSTIDRIFTRIGSSDDLA 670
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM++ +I+ TS SLVL+DEI RGT T G +A + L D+I C +
Sbjct: 671 GGRSTFMVEMTDTANILNNATSNSLVLMDEIGRGTSTFDGLSLAWATARRLADHIHCFTL 730
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGT-EYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
STH + LP N +G EY DG V + +G +S + AK G+P
Sbjct: 731 FSTHYFELTELPSLCPNMINVHLGAQEYNDG-IVFMHTVREGAASQSFGLQVAKLAGLPA 789
Query: 844 TIIQRAE 850
+IQ A+
Sbjct: 790 NVIQAAK 796
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L+ K++ P+ +L R+GDFYE DA L G E IP G P
Sbjct: 21 QFLRIKAEHPKHLLFYRMGDFYELFFDDAVRAASLLDITLTARGKSGGEDIPMCGVPYHA 80
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L R G SV I E+V P ++ R + PG+
Sbjct: 81 AESYLARLIRKGESVAICEQVGDPATSKGPVKREVVRIITPGT 123
>gi|75760974|ref|ZP_00740980.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491538|gb|EAO54748.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 803
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 512 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 571
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 572 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 631
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 632 HYHELTVLEESLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 688
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 689 LIARAKEV 696
>gi|32474719|ref|NP_867713.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SH 1]
gi|44888173|sp|Q7UP05.1|MUTS_RHOBA RecName: Full=DNA mismatch repair protein MutS
gi|32445258|emb|CAD75260.1| DNA mismatch repair protein MUTS [Rhodopirellula baltica SH 1]
Length = 891
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 144/302 (47%), Gaps = 14/302 (4%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E + T +++E E+ A KA ++ L L + IL + + + + +
Sbjct: 515 ERYITPELKEYEEKVLAADEKASSREQMLFTLLRENTHKHLAILQEVANAIAMTDVVASL 574
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTVDMQS-----LF 671
+ WV P L D + L++ G D A+G V N +QS +
Sbjct: 575 AEVAAQHHWVRPTLTD-----DSVLRIEGGRHPVLDVTMAQGEFVPNDC-IQSPETGMIL 628
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +LL G VPA SA I D I + + D + G+S+F
Sbjct: 629 LITGPNMAGKSTYIRQVALITLLAQTGSFVPATSAEIGIADRIFARVGASDELSRGQSTF 688
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E I+ TSRSLV++DEI RGT T G +A +I E L + IG + +TH H
Sbjct: 689 MVEMVETARILNTATSRSLVILDEIGRGTSTYDGLSLAWAITEHLHEQIGARTLFATHYH 748
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L + A ++ + + V ++V G +S + A+ G+P + +RA+
Sbjct: 749 ELAALQETLPRVANLSVAVKEWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERAK 808
Query: 851 DL 852
D+
Sbjct: 809 DV 810
>gi|423458048|ref|ZP_17434845.1| DNA mismatch repair protein mutS [Bacillus cereus BAG5X2-1]
gi|401148432|gb|EJQ55925.1| DNA mismatch repair protein mutS [Bacillus cereus BAG5X2-1]
Length = 890
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEESLGQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G + IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVPHHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|227550809|ref|ZP_03980858.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1330]
gi|257893264|ref|ZP_05672917.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,408]
gi|257896447|ref|ZP_05676100.1| DNA mismatch repair protein MutS [Enterococcus faecium Com12]
gi|227180046|gb|EEI61018.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1330]
gi|257829643|gb|EEV56250.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,408]
gi|257833012|gb|EEV59433.1| DNA mismatch repair protein MutS [Enterococcus faecium Com12]
Length = 881
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG +S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDTLIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|210612717|ref|ZP_03289432.1| hypothetical protein CLONEX_01634 [Clostridium nexile DSM 1787]
gi|210151410|gb|EEA82418.1| hypothetical protein CLONEX_01634 [Clostridium nexile DSM 1787]
Length = 875
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPAE+A+I D I + + D A G+S+F
Sbjct: 611 IITGPNMAGKSTYMRQTALIVLMAQIGSFVPAETANIGIVDRIFTRVGASDDLASGQSTF 670
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVSTH 788
VEM+E+ +I+ TS+SL+++DEI RGT T G IA +++E + N +G + +TH
Sbjct: 671 MVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVVEHISNGKLLGAKTLFATH 730
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L KI + + + V K+V G +S + AK GVPE++I R
Sbjct: 731 YHELTELEGKIDSVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPESVIAR 790
Query: 849 AEDL 852
A+++
Sbjct: 791 AKEI 794
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ ++ K ++ +L R+GDFYE DA + + + G GL E P G P
Sbjct: 4 QYMETKEQYKDCILFYRLGDFYEMFFDDALTVTKELDITLTGKNCGLE-ERAPMCGVPYH 62
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L L + GY V I E+V+ P A+ R + PG+
Sbjct: 63 AVEGYLTKLVQKGYKVAICEQVEDPKLAKGIVKREVVRIVTPGT 106
>gi|224537020|ref|ZP_03677559.1| hypothetical protein BACCELL_01896 [Bacteroides cellulosilyticus
DSM 14838]
gi|423223186|ref|ZP_17209655.1| DNA mismatch repair protein mutS [Bacteroides cellulosilyticus
CL02T12C19]
gi|224521387|gb|EEF90492.1| hypothetical protein BACCELL_01896 [Bacteroides cellulosilyticus
DSM 14838]
gi|392639287|gb|EIY33112.1| DNA mismatch repair protein mutS [Bacteroides cellulosilyticus
CL02T12C19]
Length = 872
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q + ++TGPN GKS+LLR +LL G VPAESA I D I + + D+ + G
Sbjct: 611 QQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNISVG 670
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGI 784
+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E + +
Sbjct: 671 ESTFMVEMNEAADILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHPKAKARTL 730
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + + K + + +D + + KL G S AK G+P++
Sbjct: 731 FATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMPKS 790
Query: 845 IIQRAEDL 852
I++RA D+
Sbjct: 791 IVKRANDI 798
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+K P V+L R GDFYE DA + E G L + +++ AG P
Sbjct: 14 QFLDLKAKHPDAVMLFRCGDFYETYSTDAVVAAEILGITLTKRANGKGKTVEMAGFPHHA 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGI-DHDLDFP 163
L L L R G V I ++++ P + R I+ PG V I D+ L++
Sbjct: 74 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG-------VSINDNILNYR 126
Query: 164 EPMPVIGVSRSAKGYCIISILE 185
E + V KG C ++ L+
Sbjct: 127 ENNFLAAV-HFGKGTCGVAFLD 147
>gi|116493022|ref|YP_804757.1| DNA mismatch repair protein MutS [Pediococcus pentosaceus ATCC
25745]
gi|122265514|sp|Q03EQ7.1|MUTS_PEDPA RecName: Full=DNA mismatch repair protein MutS
gi|116103172|gb|ABJ68315.1| DNA mismatch repair protein MutS [Pediococcus pentosaceus ATCC
25745]
Length = 873
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N +DM + L+TGPN GKS+ +R + ++ G V A A++P FD I
Sbjct: 590 SYVPNNIDMDDNTDILLITGPNMSGKSTYMRQLALTVIMAQMGCFVAASEATLPIFDQIF 649
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + TS SLVL DEI RGT T G +A SIIE
Sbjct: 650 TRIGAADDLISGQSTFMVEMQEANRALKDGTSNSLVLFDEIGRGTATYDGMALAQSIIEF 709
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N+ + STH H + L +++ +G +G V K+ DG +S
Sbjct: 710 IHQNVHAKTLFSTHYHELTELDQSLEHLKNVHVGAVEQNGNLVFLHKMEDGPADKSYGIH 769
Query: 835 TAKREGVPETIIQRA 849
AK G+P+ +++RA
Sbjct: 770 VAKLAGMPDKLLKRA 784
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K+++P L R+GDFYE DA L+E L + IP G P
Sbjct: 13 QYMEIKNQYPDAFLFYRIGDFYELFYDDAVKGSQLLELT-LTARSKNADDPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P A+ R + PG+
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPRTAKGMVKREVIQLVTPGT 115
>gi|229140410|ref|ZP_04268965.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST26]
gi|228642971|gb|EEK99247.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST26]
Length = 886
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LITRAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|222480636|ref|YP_002566873.1| DNA mismatch repair protein MutS [Halorubrum lacusprofundi ATCC
49239]
gi|222453538|gb|ACM57803.1| DNA mismatch repair protein MutS [Halorubrum lacusprofundi ATCC
49239]
Length = 956
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 4/234 (1%)
Query: 626 KWVFPALKDIELDGANC-LKMNGLSPYWFDAAEGSAVHNTVDMQ--SLFLLTGPNGGGKS 682
+V P + D N +++ G + AE S V N D+ S+ ++TGPN GKS
Sbjct: 606 DYVRPEIVDEPASDTNAGVEIEGGRHPVVERAEESFVPNDADLPRGSIAVITGPNMSGKS 665
Query: 683 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 742
+ +RS+ A +L G VPA++AS+P FD + + + D A G+S+F EMSE+ I+
Sbjct: 666 TYMRSVALAVVLAQTGSFVPAQAASLPVFDRLFTRVGASDDIAGGQSTFMREMSELTEIL 725
Query: 743 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKN 801
SLVL+DE+ RGT T G IA + E + D +G I +TH H + L + +
Sbjct: 726 HDAGPDSLVLLDEVGRGTATTDGRAIARAAAEFIHDELGATAIFATHYHDLTDLAAERER 785
Query: 802 AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA 855
DG ++V G S E A+ GVP +++R+ L A
Sbjct: 786 VFNLHFTATREDGDVTFLHRIVPGASSSSYGVEVAELAGVPAPVVERSRSLVTA 839
>gi|118478990|ref|YP_896141.1| DNA mismatch repair protein MutS [Bacillus thuringiensis str. Al
Hakam]
gi|166232115|sp|A0RHE1.1|MUTS_BACAH RecName: Full=DNA mismatch repair protein MutS
gi|118418215|gb|ABK86634.1| DNA mismatch repair protein MutS [Bacillus thuringiensis str. Al
Hakam]
Length = 890
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|57239001|ref|YP_180137.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str.
Welgevonden]
gi|58578938|ref|YP_197150.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str.
Welgevonden]
gi|81672822|sp|Q5HBQ7.1|MUTS_EHRRW RecName: Full=DNA mismatch repair protein MutS
gi|57161080|emb|CAH57987.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str.
Welgevonden]
gi|58417564|emb|CAI26768.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str.
Welgevonden]
Length = 804
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
G + N +++ Q + L+TGPN GKS+ LR +L G VPAE A I D +
Sbjct: 594 GKFIANDINLSSEQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAEYAHIGVIDKV 653
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D+ G S+F VEM E +++ T RS V++DEI RGT T G IA S+IE
Sbjct: 654 FSRVGASDNIVCGYSTFMVEMIETAAVINQATERSFVILDEIGRGTGTYDGLSIAWSVIE 713
Query: 775 TLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ N+ I +TH H + L +K+ M E DG+ V +++ G +S
Sbjct: 714 QIHNVNKSRAIFATHYHELSKLDKYLKHIKCFCMKVEEWDGKVVFLHEIIPGASDKSYGI 773
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G P++++ RAE L
Sbjct: 774 HVAKLAGFPQSVVNRAEYL 792
>gi|30263775|ref|NP_846152.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Ames]
gi|47529195|ref|YP_020544.1| DNA mismatch repair protein MutS [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186619|ref|YP_029871.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Sterne]
gi|165872427|ref|ZP_02217062.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0488]
gi|167635842|ref|ZP_02394151.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0442]
gi|167639793|ref|ZP_02398062.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0193]
gi|170687825|ref|ZP_02879039.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0465]
gi|170706805|ref|ZP_02897263.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0389]
gi|177652141|ref|ZP_02934687.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0174]
gi|190568426|ref|ZP_03021333.1| DNA mismatch repair protein MutS [Bacillus anthracis str.
Tsiankovskii-I]
gi|196038192|ref|ZP_03105501.1| DNA mismatch repair protein MutS [Bacillus cereus NVH0597-99]
gi|227813323|ref|YP_002813332.1| DNA mismatch repair protein MutS [Bacillus anthracis str. CDC 684]
gi|229601639|ref|YP_002868011.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0248]
gi|254683522|ref|ZP_05147382.1| DNA mismatch repair protein MutS [Bacillus anthracis str.
CNEVA-9066]
gi|254722043|ref|ZP_05183832.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A1055]
gi|254735809|ref|ZP_05193515.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Western
North America USA6153]
gi|254739665|ref|ZP_05197359.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Kruger B]
gi|254751061|ref|ZP_05203100.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Vollum]
gi|254759379|ref|ZP_05211404.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Australia
94]
gi|421507311|ref|ZP_15954231.1| DNA mismatch repair protein MutS [Bacillus anthracis str. UR-1]
gi|421639524|ref|ZP_16080115.1| DNA mismatch repair protein MutS [Bacillus anthracis str. BF1]
gi|44888189|sp|Q81WR3.1|MUTS_BACAN RecName: Full=DNA mismatch repair protein MutS
gi|254766612|sp|C3P5H5.1|MUTS_BACAA RecName: Full=DNA mismatch repair protein MutS
gi|254766613|sp|C3L822.1|MUTS_BACAC RecName: Full=DNA mismatch repair protein MutS
gi|30258419|gb|AAP27638.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Ames]
gi|47504343|gb|AAT33019.1| DNA mismatch repair protein MutS [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180546|gb|AAT55922.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Sterne]
gi|164711865|gb|EDR17407.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0488]
gi|167512194|gb|EDR87571.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0193]
gi|167528799|gb|EDR91557.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0442]
gi|170128223|gb|EDS97092.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0389]
gi|170668141|gb|EDT18890.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0465]
gi|172082510|gb|EDT67575.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0174]
gi|190560430|gb|EDV14408.1| DNA mismatch repair protein MutS [Bacillus anthracis str.
Tsiankovskii-I]
gi|196030600|gb|EDX69198.1| DNA mismatch repair protein MutS [Bacillus cereus NVH0597-99]
gi|227007689|gb|ACP17432.1| DNA mismatch repair protein MutS [Bacillus anthracis str. CDC 684]
gi|229266047|gb|ACQ47684.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0248]
gi|401822445|gb|EJT21595.1| DNA mismatch repair protein MutS [Bacillus anthracis str. UR-1]
gi|403393189|gb|EJY90434.1| DNA mismatch repair protein MutS [Bacillus anthracis str. BF1]
Length = 892
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|387898285|ref|YP_006328581.1| DNA mismatch repair protein [Bacillus amyloliquefaciens Y2]
gi|387172395|gb|AFJ61856.1| DNA mismatch repair protein [Bacillus amyloliquefaciens Y2]
Length = 853
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 587 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 646
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D IG +
Sbjct: 647 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDYIGAKTL 706
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 707 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 766
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 767 LISRAQEI 774
>gi|319898289|ref|YP_004158382.1| DNA mismatch repair protein MutS [Bartonella clarridgeiae 73]
gi|319402253|emb|CBI75786.1| DNA mismatch repair protein MutS [Bartonella clarridgeiae 73]
Length = 911
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 142/302 (47%), Gaps = 11/302 (3%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI--GKALFAH 618
F+T ++ E R A A LE+ L E+ +I+ + A+ L I AH
Sbjct: 540 FTTTELTELESRIAHAANHALTLELEIFDTLVYEITEQIDFIRQAAEALAILDVSVALAH 599
Query: 619 VSE--GRRRKWVFPALKDIELDGAN-----CLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
++E G R + +L G + L+ P+ + + SA N ++
Sbjct: 600 LAEEQGYCRPKIDNSLAFHITAGRHPVVEQALRKQAAEPFVANDCDLSA-RNQHPNADIW 658
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
LLTGPN GGKS+ LR +++ G VPA SA I D + + + D A G+S+F
Sbjct: 659 LLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTF 718
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 790
+EM E +I+ +S SLV++DEI RGT T G IA + +E L I C I++TH H
Sbjct: 719 MMEMVETATILNHASSHSLVILDEIGRGTSTFDGLSIAWATVEHLHEINRCRAILATHFH 778
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L K+ + + + + ++ G S + AK G+P T+I RA
Sbjct: 779 EMTALTKKLNRLHNVTIKVKNWNSDVIFLHEVTKGTADRSYGVQVAKLAGLPATVISRAT 838
Query: 851 DL 852
D+
Sbjct: 839 DV 840
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G + IP G PV +
Sbjct: 32 QYIEIKALNSDSLLFYRMGDFYELFFNDAIEAAQALGITLTTRGKHLGKDIPMCGVPVHS 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+++ P +A+ R S+ +
Sbjct: 92 ADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSV 126
>gi|384181579|ref|YP_005567341.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327663|gb|ADY22923.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 892
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|110636355|ref|YP_676563.1| DNA mismatch repair protein MutS [Chelativorans sp. BNC1]
gi|123161485|sp|Q11B27.1|MUTS_MESSB RecName: Full=DNA mismatch repair protein MutS
gi|110287339|gb|ABG65398.1| DNA mismatch repair protein MutS [Chelativorans sp. BNC1]
Length = 881
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+++LLTGPN GGKS+ LR ++L G VPA SA I D + + + D A G+
Sbjct: 626 AIWLLTGPNMGGKSTFLRQNALIAVLAQMGSFVPARSARIGVVDRLFSRVGASDDLARGR 685
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E +I+ RSLV++DEI RGT T G IA + +E L + C + +T
Sbjct: 686 STFMVEMVETAAILNQAGERSLVILDEIGRGTATFDGLSIAWAAVEYLHEKNRCRALFAT 745
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L K+ M + +G+ + ++ G S + A+ G+P+T+++
Sbjct: 746 HFHEMTALTEKLSRLVNVTMRVKEFEGEVIFLHEVARGAADRSYGIQVARLAGLPQTVVE 805
Query: 848 RAEDL 852
RA D+
Sbjct: 806 RARDV 810
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA + G L G R E IP G PV
Sbjct: 4 QYIEIKAAHADCLLFYRMGDFYELFFDDAEVASRALGITLTKRGKHRGEDIPMCGVPVHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L G+ V + E+++ P +A+ R
Sbjct: 64 ADDYLQKLIALGHRVAVCEQMEDPAEAKKR 93
>gi|58616997|ref|YP_196196.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str.
Gardel]
gi|75507513|sp|Q5FHE8.1|MUTS_EHRRG RecName: Full=DNA mismatch repair protein MutS
gi|58416609|emb|CAI27722.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str.
Gardel]
Length = 804
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
G + N +++ Q + L+TGPN GKS+ LR +L G VPAE A I D +
Sbjct: 594 GKFITNDINLSSEQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAEYAHIGVIDKV 653
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D+ G S+F VEM E +++ T RS V++DEI RGT T G IA S+IE
Sbjct: 654 FSRVGASDNIVCGYSTFMVEMIETAAVINQATERSFVILDEIGRGTGTYDGLSIAWSVIE 713
Query: 775 TLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
+ N+ I +TH H + L +K+ M E DG+ V +++ G +S
Sbjct: 714 QIHNVNKSRAIFATHYHELSKLDKYLKHIKCFCMKVEEWDGKVVFLHEIIPGASDKSYGI 773
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G P++++ RAE L
Sbjct: 774 HVAKLAGFPQSVVNRAEYL 792
>gi|384265289|ref|YP_005420996.1| DNA mismatch repair protein mutS [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|380498642|emb|CCG49680.1| DNA mismatch repair protein mutS [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
Length = 860
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 594 DSREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLI 653
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D IG +
Sbjct: 654 SGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDYIGAKTL 713
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L K+ + E +G V ++ +G +S A+ +P+
Sbjct: 714 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDD 773
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 774 LISRAQEI 781
>gi|345019807|ref|ZP_08783420.1| DNA mismatch repair protein MutS [Ornithinibacillus scapharcae
TW25]
Length = 867
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 4/197 (2%)
Query: 657 EGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
+G+ V N V++ +S+ L+TGPN GKS+ +R + +++G G VP + A + FD
Sbjct: 585 DGTFVPNDVELDEKKSMLLITGPNMSGKSTYMRQLALIAIMGQVGCFVPCDEAELMIFDQ 644
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D G+S+F VEM E + T+RSL+L+DEI RGT T G +A +I+
Sbjct: 645 IFTRIGAADDLVSGQSTFMVEMLETNHAIEHATNRSLILLDEIGRGTSTYDGMALAQAIV 704
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + N+ + STH H + +L + + + E +G V ++ +G +S
Sbjct: 705 EYIHHNVKAKTLFSTHYHELTALEDSLPKLSNVHVRAEEYEGNVVFLHQIKEGAADKSYG 764
Query: 833 FETAKREGVPETIIQRA 849
AK +PE +I RA
Sbjct: 765 IHVAKLASLPENLINRA 781
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+ + L R+GDFYE I+A +E G + E IP G P
Sbjct: 10 QYLTIKADYQDAFLFFRLGDFYEMFFEDAINASRELEITLTKRDAG-QDEKIPMCGVPYH 68
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + +L GY V I E+V+ P A+ R + PG+
Sbjct: 69 SAENYIKNLVEKGYKVAICEQVEDPKTAKGVVKREVVQLITPGT 112
>gi|333369847|ref|ZP_08461939.1| DNA mismatch repair protein MutS [Psychrobacter sp. 1501(2011)]
gi|332969295|gb|EGK08321.1| DNA mismatch repair protein MutS [Psychrobacter sp. 1501(2011)]
Length = 1033
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 108/237 (45%), Gaps = 10/237 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q L L+TGPN GGKS+ +R LL CG VPA SA I D I + S D A G
Sbjct: 734 QRLLLITGPNMGGKSTYMRQTALIVLLACCGSFVPASSARIGDIDRIFTRIGSADDLAGG 793
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVST 787
KS+F VEM E I+ TS SLVL+DE+ RGT T G IA + L +G L + +T
Sbjct: 794 KSTFMVEMIETAQILNLATSCSLVLMDEVGRGTSTTDGLAIAHACAVQLSEMGSLTLFAT 853
Query: 788 HLHGIFSLPL------KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
H + L KI+N A E GQ + K+ +G S AK G+
Sbjct: 854 HYFELTQLAKQDELNSKIRNVHVAASEVE---GQLLLLHKIKEGAASSSFGLHVAKMAGI 910
Query: 842 PETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLD 898
PE ++ AE Y+ N + Q I A D+ +I Q + D
Sbjct: 911 PEQVLIAAEH-YLTQQKNKHISLRSMQSTDDINHAKFDKAYANADEGTHIAQQNTAD 966
>gi|228916407|ref|ZP_04079974.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843210|gb|EEM88291.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 886
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 595 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 654
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 655 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 714
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 715 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 771
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 772 LIARAKEV 779
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 4 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 64 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 106
>gi|423230556|ref|ZP_17216960.1| DNA mismatch repair protein mutS [Bacteroides dorei CL02T00C15]
gi|423244265|ref|ZP_17225340.1| DNA mismatch repair protein mutS [Bacteroides dorei CL02T12C06]
gi|392630700|gb|EIY24686.1| DNA mismatch repair protein mutS [Bacteroides dorei CL02T00C15]
gi|392642446|gb|EIY36212.1| DNA mismatch repair protein mutS [Bacteroides dorei CL02T12C06]
Length = 870
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q + ++TGPN GKS+L+R +LL G VPAESA I D I + + D+ +
Sbjct: 608 ETQQIIIITGPNMAGKSALIRQTALITLLAQMGSFVPAESARIGMVDKIFTRVGASDNIS 667
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E +I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 668 VGESTFMVEMNEAANILNNLSSRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHPKAKAR 727
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + + K + + +D + + KL G S AK G+P
Sbjct: 728 TLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVIFLRKLERGGSEHSFGIHVAKMAGMP 787
Query: 843 ETIIQRAEDL 852
++I++RA D+
Sbjct: 788 KSIVKRANDI 797
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ + K+K P ++L R GDFYE DA + E G L + +S+ AG P
Sbjct: 13 QFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAGFPFHA 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
L L L R G V I ++++ P + R I+ PG
Sbjct: 73 LDTYLPKLVRAGKRVAICDQLEDPKMTKKLVKRGITELVTPG 114
>gi|260910738|ref|ZP_05917396.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 472
str. F0295]
gi|260635154|gb|EEX53186.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 472
str. F0295]
Length = 874
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 147/318 (46%), Gaps = 30/318 (9%)
Query: 555 KVGEEWFSTLKVEEA-------LERYHEAGAKAKAKVLELLRGLSSEL---------QTK 598
KV EEW + +A L+ Y E A K+ L L +EL Q +
Sbjct: 486 KVPEEWVRKQTLAQAERYITQELKEYEERILGADEKIQSLEERLFNELVTATQEFIPQIQ 545
Query: 599 INILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE-LD---GANCLKMNGLSPYWFD 654
IN V A + ++ FA +E R +V P ++D + LD G + + L P
Sbjct: 546 INANVVARLDCLLS---FAKTAEENR--YVRPVIEDSDALDIRQGRHPVIETQLPPGEHY 600
Query: 655 AAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
+ + + Q + ++TGPN GKS+LLR LL G VPAESA + D I
Sbjct: 601 VP--NDIQLDTERQQIIIITGPNMAGKSALLRQTALIVLLAQIGCFVPAESARVGLVDKI 658
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D+ A G+S+F VEM+E +I+ + RSLVL DE+ RGT T G IA +I+E
Sbjct: 659 FTRVGASDNIAQGESTFMVEMTEASNILNNVSPRSLVLFDELGRGTSTYDGISIAWAIVE 718
Query: 775 TLD---NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 831
L + +TH H + + K + + L+G+ + +L G S
Sbjct: 719 YLHEQPKARARTLFATHYHELNEMEKNFKRIKNFNVSVKELNGKVIFMRRLERGGSEHSF 778
Query: 832 AFETAKREGVPETIIQRA 849
A G+P++I++RA
Sbjct: 779 GIHVADIAGMPKSIVKRA 796
>gi|196044558|ref|ZP_03111793.1| DNA mismatch repair protein MutS [Bacillus cereus 03BB108]
gi|225865750|ref|YP_002751128.1| DNA mismatch repair protein MutS [Bacillus cereus 03BB102]
gi|376267662|ref|YP_005120374.1| DNA mismatch repair protein MutS [Bacillus cereus F837/76]
gi|254766614|sp|C1ENZ3.1|MUTS_BACC3 RecName: Full=DNA mismatch repair protein MutS
gi|196024593|gb|EDX63265.1| DNA mismatch repair protein MutS [Bacillus cereus 03BB108]
gi|225787987|gb|ACO28204.1| DNA mismatch repair protein MutS [Bacillus cereus 03BB102]
gi|364513462|gb|AEW56861.1| DNA mismatch repair protein MutS [Bacillus cereus F837/76]
Length = 890
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|196034166|ref|ZP_03101576.1| DNA mismatch repair protein MutS [Bacillus cereus W]
gi|195993240|gb|EDX57198.1| DNA mismatch repair protein MutS [Bacillus cereus W]
Length = 892
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|423604602|ref|ZP_17580495.1| DNA mismatch repair protein mutS [Bacillus cereus VD102]
gi|401245222|gb|EJR51580.1| DNA mismatch repair protein mutS [Bacillus cereus VD102]
Length = 892
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|422877527|ref|ZP_16923997.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1056]
gi|332360166|gb|EGJ37980.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1056]
Length = 849
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALENSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|344230439|gb|EGV62324.1| hypothetical protein CANTEDRAFT_126075 [Candida tenuis ATCC 10573]
Length = 923
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 645 MNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 704
+N L+ Y + A ++ N + L+TGPN GGKSS ++SI ++ G +P E
Sbjct: 684 INTLTNYITNDAHITSTENRIS-----LITGPNMGGKSSYIKSIGILVIMHQIGCYLPCE 738
Query: 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAK 764
SA + F I + M S+D+ G+S+F +EM EI +I+ S SL+L+DE+ RGT T
Sbjct: 739 SAKLSIFKKIFIRMGSFDNIIKGQSTFMIEMIEILNILQNFDSSSLILLDEVGRGTGTFD 798
Query: 765 GTCIAGSIIETLDNIGC------LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP 818
G IA SII+ C + + TH H + L +K +G Y+D P
Sbjct: 799 GYVIAYSIIQHF----CGHAESPVVLFITHFHKLTELA-----NEHKVVGNFYMDFIKKP 849
Query: 819 T-------WKLVDGICRESLAFETAKREGVPETIIQRAE 850
+KLV GI S AK G+PE +I+RA+
Sbjct: 850 ESDEIQFLYKLVPGILDNSFGLNVAKLAGIPEEVIERAK 888
>gi|123967068|ref|YP_001012149.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT
9515]
gi|123201434|gb|ABM73042.1| putative DNA mismatch repair protein [Prochlorococcus marinus str.
MIT 9515]
Length = 914
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 95/186 (51%), Gaps = 1/186 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ Q L +LTGPN GKS +R I +L G +PA A+I D I + + D +
Sbjct: 711 NKQKLIILTGPNASGKSCFIRQIGLIQILSQIGSFIPASKANIQIADRIFTRIGAVDDQS 770
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEMSE SI+ TS SLVL+DEI RGT T G IA S+ E L I C I
Sbjct: 771 SGQSTFMVEMSETASILNQATSNSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIVCNTI 830
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L KN + + Q K+ G +S E AK GVP+
Sbjct: 831 FATHYHELNYLKNTNKNVENFQVLVKQKKDQLYFCHKITKGGANKSYGIEAAKLAGVPKE 890
Query: 845 IIQRAE 850
+I +A+
Sbjct: 891 VIDKAK 896
>gi|307354004|ref|YP_003895055.1| DNA mismatch repair protein MutS [Methanoplanus petrolearius DSM
11571]
gi|307157237|gb|ADN36617.1| DNA mismatch repair protein MutS [Methanoplanus petrolearius DSM
11571]
Length = 881
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 134/279 (48%), Gaps = 21/279 (7%)
Query: 586 ELLRGLSSELQTKIN-ILVFASMLLVIGK----ALFAHVSEGRRRKWVFPALKDIELDGA 640
+L G+ +EL+ K+ IL A M IG+ A FAH+S +V P ++D A
Sbjct: 537 DLYDGILTELREKVEEILETAKM---IGRLDVLADFAHLSSNF--NYVRPVIED----SA 587
Query: 641 NCLKMNGLSPYWFDAAEGSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGI 696
L +G P V N + S + ++TG N GKS+ +R + ++
Sbjct: 588 RLLISDGRHPVVERNQSSGFVPNDAGIDSSDNQILIITGANMAGKSTYMREVALLCIMAQ 647
Query: 697 CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEI 756
G VPA A I D I + ++D + G+S+F VEM E+ +I+ T +SLV++DEI
Sbjct: 648 AGCFVPASGAVIGIIDRIFTRVGAFDDLSSGQSTFMVEMLELANILNNVTDKSLVILDEI 707
Query: 757 CRGTETAKGTCIAGSIIETLDNIGCLG---IVSTHLHGIFSLPLKIKNAAYKAMGTEYLD 813
RGT T G IA ++IE L G G + +TH H + + K+K +
Sbjct: 708 GRGTSTLDGYSIACAVIEYLHGSGSSGPRTLFATHFHEMVDIEGKMKRVKNYHFAVKDTG 767
Query: 814 GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
V KL+ G +S AK G+P +++R+E++
Sbjct: 768 SDIVFLRKLIPGASDKSYGIHVAKLAGIPRKVLKRSEEI 806
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRP---ESIPKAGCPVV 103
+ + KSK P VL ++GDFYE G DA ++ + R E +P AG P+
Sbjct: 11 QFYEMKSKHPGTVLFFQMGDFYETFGEDAEVVSRELDITLTSRGRDKNGEKMPLAGVPIH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLV 154
+ L + GY V + ++++ P +A+ R + PG+ G++
Sbjct: 71 AGESYISRLVKKGYRVAVCDQIEDPKKAKGIVKRDVVRIITPGTIIDSGMI 121
>gi|134299738|ref|YP_001113234.1| DNA mismatch repair protein MutS [Desulfotomaculum reducens MI-1]
gi|189030714|sp|A4J5Q6.1|MUTS_DESRM RecName: Full=DNA mismatch repair protein MutS
gi|134052438|gb|ABO50409.1| DNA mismatch repair protein MutS [Desulfotomaculum reducens MI-1]
Length = 868
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L L+TGPN GGKS+ R + L+ G VPA+ A I D I + + D G
Sbjct: 613 ERLCLITGPNMGGKSTYQRQVALIVLMAQVGSFVPAQRARIGIVDRIFARVGASDDLTSG 672
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E + I+ T++SLV+IDE+ RGT +G IA S+IE L D +GC + S
Sbjct: 673 QSTFMVEMYETKQIIDHATAKSLVIIDELGRGTSNLEGMAIAQSVIEFLHDEVGCRTLFS 732
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L ++ A + + V K+V +S A+ G+P +II
Sbjct: 733 THYHELAELEGLLRGLKNYATAVKEQGDEVVFLRKVVRSKASKSYGVHCARLAGLPTSII 792
Query: 847 QRAEDLYI 854
+RA +L +
Sbjct: 793 RRASELVM 800
Score = 46.2 bits (108), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLRPESIPKAGCPVVN 104
+ L K + P +L R+GDFYE DA + + + G PE +P G P
Sbjct: 9 QYLDIKKQHPNTILFFRLGDFYEMFFEDAKLASQELEITLTGRDAGEPERVPMCGVPFHA 68
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+V+ P + R + PG+
Sbjct: 69 ADSYISKLIEKGYKVAICEQVEDPKVTKGIVKREVIRVITPGT 111
>gi|440713279|ref|ZP_20893880.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SWK14]
gi|436441745|gb|ELP34937.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SWK14]
Length = 888
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 144/302 (47%), Gaps = 14/302 (4%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E + T +++E E+ A KA ++ L L + IL + + + + +
Sbjct: 512 ERYITPELKEYEEKVLAADEKASSREQMLFTLLRENTHKHLAILQEVANAIAMTDVVASL 571
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTVDMQS-----LF 671
+ WV P L D + L++ G D A+G V N +QS +
Sbjct: 572 AEVAAQHHWVRPTLTD-----DSVLRIEGGRHPVLDVTMAQGEFVPNDC-IQSPETGMIL 625
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +LL G VPA SA I D I + + D + G+S+F
Sbjct: 626 LITGPNMAGKSTYIRQVALITLLAQTGSFVPATSAEIGIADRIFARVGASDELSRGQSTF 685
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E I+ TSRSLV++DEI RGT T G +A +I E L + IG + +TH H
Sbjct: 686 MVEMVETARILNTATSRSLVILDEIGRGTSTYDGLSLAWAITEHLHEQIGARTLFATHYH 745
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L + A ++ + + V ++V G +S + A+ G+P + +RA+
Sbjct: 746 ELAALQETLPRVANLSVAVKEWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERAK 805
Query: 851 DL 852
D+
Sbjct: 806 DV 807
>gi|422849889|ref|ZP_16896565.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK115]
gi|325689185|gb|EGD31192.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK115]
Length = 849
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALEDSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|288906383|ref|YP_003431605.1| DNA Mismatch repair ATPase (MutS family) [Streptococcus
gallolyticus UCN34]
gi|306832430|ref|ZP_07465583.1| DNA mismatch repair protein MutS [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325979397|ref|YP_004289113.1| DNA mismatch repair protein mutS [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386338874|ref|YP_006035043.1| DNA mismatch repair protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288733109|emb|CBI14690.1| DNA Mismatch repair ATPase (MutS family) [Streptococcus
gallolyticus UCN34]
gi|304425470|gb|EFM28589.1| DNA mismatch repair protein MutS [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325179325|emb|CBZ49369.1| DNA mismatch repair protein mutS [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281510|dbj|BAK29084.1| DNA mismatch repair protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 856
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G V AES ++P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLALTVIMAQMGSYVAAESVNLPVFDAIFTRIGAADDLISGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + +S+SL+L DE+ RGT T G +A SIIE + N IG + +TH H
Sbjct: 659 MVEMMEANQAIKRASSQSLILFDELGRGTATYDGMALAQSIIEYIHNHIGAKTMFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L + + + T +G K+ +G +S AK G+PE ++QRA+
Sbjct: 719 ELTALSTSLTHLINVHVATLEKNGDVTFLHKIAEGPADKSYGIHVAKIAGLPEELLQRAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQQYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|297743972|emb|CBI36942.3| unnamed protein product [Vitis vinifera]
Length = 1237
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 6/190 (3%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D LLTGPN GGKS+LLR +C A +L G VPAES + D I + M + D+
Sbjct: 971 DHACFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFELSPVDRIFVRMGAKDNIM 1030
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGI 784
G+S+F E+SE S++T+ T SLV +DE+ RGT T+ G IA S++E + + C G+
Sbjct: 1031 AGQSTFLTELSETASMLTSATCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKVRCRGM 1090
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-----QTVPTWKLVDGICRESLAFETAKRE 839
STH H + K + M + G + ++L G C +S A+
Sbjct: 1091 FSTHYHRLAVDYKKNSKVSLCHMACQVGKGVGGVEEVTFLYRLRPGACPKSYGVNVARLA 1150
Query: 840 GVPETIIQRA 849
G+P +++Q+A
Sbjct: 1151 GLPNSVLQKA 1160
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE 93
LKN L G W +FKS+ +V+ ++G FYE +DA I + L G +P
Sbjct: 301 LKN--LTGGQRQW--WEFKSRHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKGGQPH 356
Query: 94 SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P N ++ L R GY V +VE+ + P Q R+
Sbjct: 357 ----CGFPEKNFSINVEKLARKGYRVLVVEQTETPEQLELRR 394
>gi|218904897|ref|YP_002452731.1| DNA mismatch repair protein MutS [Bacillus cereus AH820]
gi|226723050|sp|B7JJ47.1|MUTS_BACC0 RecName: Full=DNA mismatch repair protein MutS
gi|218535511|gb|ACK87909.1| DNA mismatch repair protein MutS [Bacillus cereus AH820]
Length = 892
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+FL+TGPN GKS+ +R + +++ G VPA A +P FD I + + D G+
Sbjct: 601 DVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQ 660
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E ++ + + RSL+L DEI RGT T G +A +IIE + D IG + ST
Sbjct: 661 STFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFST 720
Query: 788 HLHGIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
H H + L ++KN A+ +G+ V K+ DG +S A+ +P++
Sbjct: 721 HYHELTVLEDSLDQLKNVHVSAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 778 LIARAKEV 785
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+ + L R+GDFYE DA L G E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 70 AKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>gi|125719039|ref|YP_001036172.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK36]
gi|166232147|sp|A3CR17.1|MUTS_STRSV RecName: Full=DNA mismatch repair protein MutS
gi|125498956|gb|ABN45622.1| DNA mismatch repair protein hexA, putative [Streptococcus sanguinis
SK36]
Length = 849
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALEESLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|393243806|gb|EJD51320.1| DNA mismatch repair protein Msh6 [Auricularia delicata TFB-10046 SS5]
Length = 1110
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 162/351 (46%), Gaps = 39/351 (11%)
Query: 531 TVWASTPGEEQIKQLK-PAVDSKGRKVGEEWFSTLKVEEALERY------------HEAG 577
T W S G+++I ++ PA +K +KV +W T +A++RY EA
Sbjct: 710 TYWHSAQGQKEIYIVQVPA--AKTKKVPSDWVQT-NSTKAMKRYDVPDLAPLIRKLKEAR 766
Query: 578 AKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALF--AHVSEGR----RRKWVFPA 631
A + + + I + A +L LF A SE R + V
Sbjct: 767 ENRTAAINSFKSRVFAAFDADRGIWLRAVRMLAELDCLFSLAKASEAIGATCRPEIVESD 826
Query: 632 LKDIELDG----ANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRS 687
+ +E A CLK + P D A G + + LLTGPN GGKS+L+R
Sbjct: 827 VASVEFKNLKHPALCLKRDEFIPN--DVALGGS------KPRVMLLTGPNMGGKSTLMRM 878
Query: 688 ICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 747
A ++ G+++PA+SA I DAIM M +YD+ S+F+VE+ E I+ +
Sbjct: 879 TAAGVIMAQLGMLLPADSARISPVDAIMTRMGAYDNMFSNSSTFKVELDECCKILKEASP 938
Query: 748 RSLVLIDEICRGTETAKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFSLPLKIKNAA 803
+SLV++DE+ RGT T G IAG+++ + + C + L ++ +I+N
Sbjct: 939 KSLVILDELGRGTSTYDGMAIAGAVLHEIATHTLALSCFATHYSSLTDDYAYHPQIRN-M 997
Query: 804 YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYI 854
+ A + + V +KLVDG+ S A GVP +++RAE + I
Sbjct: 998 HMATRVDDERRELVFLYKLVDGVATGSFGTHVASLAGVPSDVVERAEVISI 1048
>gi|392531926|ref|ZP_10279063.1| DNA mismatch repair protein MutS [Carnobacterium maltaromaticum
ATCC 35586]
Length = 873
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 4/197 (2%)
Query: 657 EGSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
+ + V N+V+M + + L+TGPN GKS+ +R + ++ G VPAE A +P FD
Sbjct: 589 QQTYVPNSVEMTTETDILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAEKADLPIFDQ 648
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D G+S+F VEM E + T RSL+L DEI RGT T G +A +II
Sbjct: 649 IFTRIGAADDLISGQSTFMVEMMEANQALRHATDRSLILFDEIGRGTATYDGMALAEAII 708
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + ++ + STH H + L +K +G +G+ V K++ G +S
Sbjct: 709 EYIHQHVHAKTLFSTHYHELTVLEDSLKGLENIHVGAVEENGEVVFLHKMMPGPADKSYG 768
Query: 833 FETAKREGVPETIIQRA 849
AK G+PE +++RA
Sbjct: 769 IHVAKLAGLPEELLERA 785
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR--PESIPKAGCPVVN 104
+ L K+ + L R+GDFYE DA + + R E IP G P
Sbjct: 13 QYLAIKANYEDAFLFYRLGDFYEMFYDDAIKATQLLEITLTARNRNADEPIPMCGVPYHA 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
R +D L GY V I E+V+ P A+ R + PG+
Sbjct: 73 ARGYIDILIEKGYKVAICEQVEDPKTAKGMVKREVVQLITPGT 115
>gi|331089571|ref|ZP_08338470.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438886|ref|ZP_08618507.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
1_1_57FAA]
gi|330404939|gb|EGG84477.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017376|gb|EGN47138.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
1_1_57FAA]
Length = 883
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R +L+ G VPA+SA+I D I + + D A G+S+F
Sbjct: 617 IITGPNMAGKSTYMRQTALIALMAQIGSFVPAKSANIGLSDRIFTRVGASDDLASGQSTF 676
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTH 788
VEM+E+ +I+ TS+SL+++DEI RGT T G IA ++IE + + LG + +TH
Sbjct: 677 MVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVIEYISDSRLLGAKTLFATH 736
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L KI N + + V K+V G +S + AK GVPE +I R
Sbjct: 737 YHELTELEGKIDNVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPELVIGR 796
Query: 849 AEDL 852
A+++
Sbjct: 797 AKEI 800
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGL--RPESIPKAGCPVVN 104
+ ++ KS++ +L R+GDFYE DA + G + E P G P
Sbjct: 10 QYMETKSQYQDCILFYRLGDFYEMFFEDALTASRELEITLTGKNCGQEEKAPMCGVPYHA 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L+ L GY V I E+V+ P + R + PG+
Sbjct: 70 VEGYLNRLVAKGYKVAICEQVEDPKTTKGIVKREVVRIVTPGT 112
>gi|298676066|ref|YP_003727816.1| DNA mismatch repair protein MutS [Methanohalobium evestigatum
Z-7303]
gi|298289054|gb|ADI75020.1| DNA mismatch repair protein MutS [Methanohalobium evestigatum
Z-7303]
Length = 887
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 21/287 (7%)
Query: 580 AKAKVLELLRGLSSELQTKI-----NILVFASMLLVIGK-ALFAHVSE-GRRRKWVFPAL 632
A K++ L L +++ +K+ N+ A++ IGK + A+++E +V P +
Sbjct: 527 ADEKIVSLEYNLFTDINSKVASHSKNLQRTATL---IGKLDVLANLAEIAVNNNYVRPEV 583
Query: 633 KDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSI 688
D + G P + + V N +M L+TGPN GKS+ +R
Sbjct: 584 TD----DCDITIREGRHPVVENKVDSGFVANDCEMNCTDNQFLLITGPNMAGKSTYMRQN 639
Query: 689 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748
+++ G VPA ASI D + + ++D A G+S+F VEM E+ +I+ T +
Sbjct: 640 SLITIMAQAGSFVPASYASIGIVDRVFTRVGAFDDLASGQSTFMVEMVELANILNNATPK 699
Query: 749 SLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805
SLVL+DEI RGT T G IA +++E + D +G + +TH H + L K+K +
Sbjct: 700 SLVLLDEIGRGTSTFDGYSIAKAVVEYIHKKDGVGVRSLFATHYHQLTDLENKLKRVSNY 759
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ + V K+V G +S + A+ GVP+ + RA ++
Sbjct: 760 HIAVKEEGDNLVFLRKIVPGATDKSYGIQVARYAGVPKKVTSRAREI 806
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K K+ +L R+GDFYE DA + +E N G + E P AG P +
Sbjct: 13 EMKKKYSDALLFFRMGDFYECFDEDAKTVSEELEITLTNRNGNKKGEKRPLAGIPYHAVD 72
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L + GY V I E+++ P +A+ R + PG+
Sbjct: 73 NYLPRLIKKGYKVAICEQLEDPREAKGVVKRGVVRVVTPGT 113
>gi|422822661|ref|ZP_16870854.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK353]
gi|324989669|gb|EGC21613.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK353]
Length = 849
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALEDSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|422850573|ref|ZP_16897243.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK150]
gi|325695321|gb|EGD37221.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK150]
Length = 849
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPIFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALENSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|431592259|ref|ZP_19521495.1| DNA mismatch repair protein mutS [Enterococcus faecium E1861]
gi|430591884|gb|ELB29911.1| DNA mismatch repair protein mutS [Enterococcus faecium E1861]
Length = 881
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P L D L +G P + N+V+M + + L
Sbjct: 552 ATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKEAVLPIFDRIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHG 791
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P +++RA D
Sbjct: 727 LTILEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.9 bits (102), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|414084245|ref|YP_006992953.1| DNA mismatch repair protein MutS [Carnobacterium maltaromaticum
LMA28]
gi|412997829|emb|CCO11638.1| DNA mismatch repair protein MutS [Carnobacterium maltaromaticum
LMA28]
Length = 873
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 4/197 (2%)
Query: 657 EGSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
+ + V N+V+M + + L+TGPN GKS+ +R + ++ G VPAE A +P FD
Sbjct: 589 QQTYVPNSVEMTTETDILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAEKADLPIFDQ 648
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D G+S+F VEM E + T RSL+L DEI RGT T G +A +II
Sbjct: 649 IFTRIGAADDLISGQSTFMVEMMEANQALRHATDRSLILFDEIGRGTATYDGMALAEAII 708
Query: 774 ETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + ++ + STH H + L +K +G +G+ V K++ G +S
Sbjct: 709 EYIHQHVHAKTLFSTHYHELTVLEDSLKGLENIHVGAVEENGEVVFLHKMMPGPADKSYG 768
Query: 833 FETAKREGVPETIIQRA 849
AK G+PE +++RA
Sbjct: 769 IHVAKLAGLPEELLERA 785
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLR--PESIPKAGCPVVN 104
+ L K+ + L R+GDFYE DA + + R E IP G P
Sbjct: 13 QYLAIKANYEDAFLFYRLGDFYEMFYDDAIKATQLLEITLTARNRNADEPIPMCGVPYHA 72
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
R +D L GY V I E+V+ P A+ R + PG+
Sbjct: 73 ARGYIDILIEKGYKVAICEQVEDPKTAKGMVKREVVQLITPGT 115
>gi|359784997|ref|ZP_09288158.1| DNA mismatch repair protein MutS [Halomonas sp. GFAJ-1]
gi|359297692|gb|EHK61919.1| DNA mismatch repair protein MutS [Halomonas sp. GFAJ-1]
Length = 859
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 137/294 (46%), Gaps = 13/294 (4%)
Query: 570 LERYHEAGAKAKAKVLELLRGLSSELQTKINILVFA----SMLLVIGKALFAHVSEGRRR 625
L+ + + AK++ L + L L ++N L+ A S L L A
Sbjct: 507 LKEFEDKALSAKSRALTREKWLYERLMGELNALLHALQSTSRALAELDVLCAFAERAEAL 566
Query: 626 KWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKS 682
WV P L +E G + G P ++ V N V + Q + ++TGPN GGKS
Sbjct: 567 NWVRPQL--VEATGISI--SAGRHPVVEQVSDKPFVPNDVTLSPDQHMLIITGPNMGGKS 622
Query: 683 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 742
+ +R +LL G VPA++A I D I + S D A G+S+F VEM+E +I+
Sbjct: 623 TYMRQTALIALLAHSGSFVPADAAEIGPIDRIFTRIGSSDDLAGGRSTFMVEMTETANIL 682
Query: 743 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 802
T SLVL+DEI RGT T G +A + E L L + +TH + SLP +
Sbjct: 683 HNATEHSLVLMDEIGRGTSTFDGLSLAWASAEHLATARALTLFATHYFEMTSLPEQANGV 742
Query: 803 AYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA 855
A + TE+ D V ++ G +S + A+ GVP +I RA + IA
Sbjct: 743 ANIHLTATEHGDS-IVFMHRIEAGPASQSYGLQVAQLAGVPTPVISRAREKLIA 795
Score = 40.0 bits (92), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGID---ACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L+ K + P +L R+GDFYE D A L++ L G + IP AG P
Sbjct: 14 QYLKIKREHPEVLLFYRMGDFYELFFDDAKRAAALLDIT-LTQRGQSGGKPIPMAGVPYH 72
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHD 159
+ L L G SV I E++ P ++ R + PG+ + L+ D
Sbjct: 73 SAEGYLARLVAGGESVAICEQIGDPATSKGPVDRQVVRIVTPGTLHDEALLDARRD 128
>gi|225437545|ref|XP_002275930.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Vitis vinifera]
Length = 1297
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 6/190 (3%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D LLTGPN GGKS+LLR +C A +L G VPAES + D I + M + D+
Sbjct: 1031 DHACFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFELSPVDRIFVRMGAKDNIM 1090
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGI 784
G+S+F E+SE S++T+ T SLV +DE+ RGT T+ G IA S++E + + C G+
Sbjct: 1091 AGQSTFLTELSETASMLTSATCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKVRCRGM 1150
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-----QTVPTWKLVDGICRESLAFETAKRE 839
STH H + K + M + G + ++L G C +S A+
Sbjct: 1151 FSTHYHRLAVDYKKNSKVSLCHMACQVGKGVGGVEEVTFLYRLRPGACPKSYGVNVARLA 1210
Query: 840 GVPETIIQRA 849
G+P +++Q+A
Sbjct: 1211 GLPNSVLQKA 1220
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE 93
LKN L G W +FKS+ +V+ ++G FYE +DA I + L G +P
Sbjct: 331 LKN--LTGGQRQW--WEFKSRHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKGGQPH 386
Query: 94 SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 135
G P N ++ L R GY V +VE+ + P Q R+
Sbjct: 387 ----CGFPEKNFSINVEKLARKGYRVLVVEQTETPEQLELRR 424
>gi|421611501|ref|ZP_16052641.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SH28]
gi|408497744|gb|EKK02263.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SH28]
Length = 891
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 144/302 (47%), Gaps = 14/302 (4%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E + T +++E E+ A KA ++ L L + IL + + + + +
Sbjct: 515 ERYITPELKEYEEKVLAADEKASSREQMLFTLLRENTHKHLAILQEVANAIAMTDVVASL 574
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTVDMQS-----LF 671
+ WV P L D + L++ G D A+G V N +QS +
Sbjct: 575 AEVAAQHHWVRPTLTD-----DSVLRIEGGRHPVLDVTMAQGEFVPNDC-IQSPETGMIL 628
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +LL G VPA SA I D I + + D + G+S+F
Sbjct: 629 LITGPNMAGKSTYIRQVALITLLAQTGSFVPATSAEIGIADRIFARVGASDELSRGQSTF 688
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E I+ TSRSLV++DEI RGT T G +A +I E L + IG + +TH H
Sbjct: 689 MVEMVETARILNTATSRSLVILDEIGRGTSTYDGLSLAWAITEHLHEQIGARTLFATHYH 748
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L + A ++ + + V ++V G +S + A+ G+P + +RA+
Sbjct: 749 ELAALQETLPRVANLSVAVKEWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERAK 808
Query: 851 DL 852
D+
Sbjct: 809 DV 810
>gi|334882032|emb|CCB82982.1| DNA mismatch repair protein mutS [Lactobacillus pentosus MP-10]
Length = 910
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N V M +++ L+TGPN GKS+ +R + ++ G VPA+SA +P FD I
Sbjct: 588 SYVPNDVTMAPDETVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIF 647
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + + T+ SLVL DEI RGT T G +A +IIE
Sbjct: 648 TRIGATDDLISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEF 707
Query: 776 LDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N I + STH H + +L ++ +G +G+ V K+ G +S
Sbjct: 708 VHNHIHAKTLFSTHYHELTALDQELSGLRNVHVGATEQNGELVFLHKVEPGAADKSYGVH 767
Query: 835 TAKREGVPETIIQRA 849
AK G+P+++++RA
Sbjct: 768 VAKLAGMPDSLLKRA 782
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIP 96
K+ + + L K+++P L R+GDFYE DA L+E L IP
Sbjct: 6 KDTPMMRQYLAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELT-LTTRNHSAENPIP 64
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSP-------- 148
G P ++ +D L GY V I E+++ P A+ R + PG+
Sbjct: 65 MCGVPHRAVQNYIDILVDKGYKVAICEQMEDPKLAKGMVKREVIQLVTPGTTLERGAEQA 124
Query: 149 ----YVFGLVGIDHDLDF 162
Y+ L+ +D F
Sbjct: 125 KSNNYLTALIQVDKQYGF 142
>gi|153814910|ref|ZP_01967578.1| hypothetical protein RUMTOR_01125 [Ruminococcus torques ATCC 27756]
gi|317500422|ref|ZP_07958646.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium
8_1_57FAA]
gi|145847941|gb|EDK24859.1| DNA mismatch repair protein MutS [Ruminococcus torques ATCC 27756]
gi|316898177|gb|EFV20224.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium
8_1_57FAA]
Length = 877
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R +L+ G VPA+SA+I D I + + D A G+S+F
Sbjct: 611 IITGPNMAGKSTYMRQTALIALMAQIGSFVPAKSANIGLSDRIFTRVGASDDLASGQSTF 670
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTH 788
VEM+E+ +I+ TS+SL+++DEI RGT T G IA ++IE + + LG + +TH
Sbjct: 671 MVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVIEYISDSRLLGAKTLFATH 730
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L KI N + + V K+V G +S + AK GVPE +I R
Sbjct: 731 YHELTELEGKIDNVNNYCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPELVIGR 790
Query: 849 AEDL 852
A+++
Sbjct: 791 AKEI 794
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGL--RPESIPKAGCPVVN 104
+ ++ KS++ +L R+GDFYE DA + G + E P G P
Sbjct: 4 QYMETKSQYQDCILFYRLGDFYEMFFEDALTASRELEITLTGKNCGQEEKAPMCGVPYHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L+ L GY V I E+V+ P + R + PG+
Sbjct: 64 VEGYLNRLVAKGYKVAICEQVEDPKTTKGIVKREVVRIVTPGT 106
>gi|452974389|gb|EME74209.1| DNA mismatch repair protein MutS [Bacillus sonorensis L12]
Length = 868
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 16/244 (6%)
Query: 616 FAHVSEGRRRKWVFPALKD--IELDGANCLKMNGLSPYWFDAAEG-SAVHNTVDM---QS 669
FA +SE R +V P D +E+ ++G P + S V N+ M +
Sbjct: 546 FATISENRH--YVKPEFSDDVVEV-------VDGRHPVVEKVMDSQSYVPNSCQMGQGRQ 596
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ L+TGPN GKS+ +R + S+L G VPA+ A +P FD I + + D G+S
Sbjct: 597 MLLITGPNMSGKSTYMRQMALISILAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQS 656
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTH 788
+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + N IG + STH
Sbjct: 657 TFMVEMLEAKNAIVHATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHNHIGAKTLFSTH 716
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L K+ + E +G+ V ++ +G +S A+ +P +I R
Sbjct: 717 YHELTALEDKLAELKNVHVRAEEYEGKVVFLHQIKEGAADKSYGIHVAQLAELPGDLISR 776
Query: 849 AEDL 852
A+ +
Sbjct: 777 AKTI 780
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ K+++ L R+GDFYE DA + L G E IP G P +
Sbjct: 10 QYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSSERIPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L + GY V I E+V+ P A+ R + PG+
Sbjct: 70 CSSYIEQLIKKGYKVAICEQVEDPKAAKGVVKREVVQLITPGT 112
>gi|448459730|ref|ZP_21596780.1| DNA mismatch repair protein MutS [Halorubrum lipolyticum DSM 21995]
gi|445808182|gb|EMA58256.1| DNA mismatch repair protein MutS [Halorubrum lipolyticum DSM 21995]
Length = 959
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 141/299 (47%), Gaps = 17/299 (5%)
Query: 571 ERYHE-AGAKAKAKVLEL-----LRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRR 624
ER E GA +A LE +RG ++ +I L A L AL + +
Sbjct: 561 EREEEIVGAAERADALEYELFVDVRGRVADETERIQGLADAIAEL---DALRSLATVAVE 617
Query: 625 RKWVFPALKDIELDGANC-----LKMNGLSPYWFDAAEGSAVHNTVDMQ--SLFLLTGPN 677
R +V P + D G + +++ G + AE S V N D+ S+ ++TGPN
Sbjct: 618 RDYVRPEIVDDPAAGPDADPDAGVEIEGGRHPVVERAEESFVPNDADLPRGSIAVITGPN 677
Query: 678 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 737
GKS+ +RS+ A +L G VPA++A++P FD + + + D A G+S+F EMSE
Sbjct: 678 MSGKSTYMRSVALAVVLAQTGSFVPAQAATLPVFDRLFTRVGASDDIAGGQSTFMREMSE 737
Query: 738 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP 796
+ I+ SLVL+DE+ RGT T G IA + E + D +G + +TH HG+ L
Sbjct: 738 LTEILHDAGPNSLVLLDEVGRGTATTDGRAIARAAAEFIHDKLGATALFATHYHGLTDLA 797
Query: 797 LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA 855
+ + G ++V G S E A+ GVP +++R+ L A
Sbjct: 798 EERERVFNLHFTATREGGDVTFLHRVVPGASSSSYGVEVAELAGVPAPVVERSRSLVAA 856
>gi|347761852|ref|YP_004869413.1| DNA mismatch repair protein Smr [Gluconacetobacter xylinus NBRC
3288]
gi|347580822|dbj|BAK85043.1| DNA mismatch repair protein Smr [Gluconacetobacter xylinus NBRC
3288]
Length = 869
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 1/181 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ LLTGPN GKS+ LR A +L GL V A S I D + + + D A G+S
Sbjct: 618 IMLLTGPNMAGKSTFLRQTALAVILAQAGLPVAAASMRIGVVDRLFSRVGAADDLARGRS 677
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F VEM+E +I+ RSLV++DEI RGT T G IA +++ETL + C I +TH
Sbjct: 678 TFMVEMTETAAILNQAGPRSLVVVDEIGRGTSTLDGLAIAWAVLETLHSTLRCRAIFATH 737
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L + M GQ + ++V G R S A+ GVPE +++R
Sbjct: 738 FHELAELSDSMPRLTPHTMSVREWKGQVIFQHEVVPGSARRSWGVHVARLAGVPEPVVRR 797
Query: 849 A 849
A
Sbjct: 798 A 798
>gi|422825315|ref|ZP_16873494.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK678]
gi|324995817|gb|EGC27728.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK678]
Length = 849
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALEDSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|339639233|emb|CCC18468.1| DNA mismatch repair protein mutS [Lactobacillus pentosus IG1]
Length = 910
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N V M +++ L+TGPN GKS+ +R + ++ G VPA+SA +P FD I
Sbjct: 588 SYVPNDVTMAPDETVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIF 647
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + + T+ SLVL DEI RGT T G +A +IIE
Sbjct: 648 TRIGATDDLISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEF 707
Query: 776 LDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N I + STH H + +L ++ +G +G+ V K+ G +S
Sbjct: 708 VHNHIHAKTLFSTHYHELTALDQELSGLRNVHVGATEQNGELVFLHKVEPGAADKSYGVH 767
Query: 835 TAKREGVPETIIQRA 849
AK G+P+++++RA
Sbjct: 768 VAKLAGMPDSLLKRA 782
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 40 KEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIP 96
K+ + + L K+++P L R+GDFYE DA L+E L IP
Sbjct: 6 KDTPMMRQYLAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELT-LTTRNHSAENPIP 64
Query: 97 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSP-------- 148
G P ++ +D L GY V I E+++ P A+ R + PG+
Sbjct: 65 MCGVPHRAVQNYIDILVDKGYKVAICEQMEDPKLAKGMVKREVIQLVTPGTTVERGAEQA 124
Query: 149 ----YVFGLVGIDHDLDF 162
Y+ L+ +D F
Sbjct: 125 KSNNYLTALIQVDKQYGF 142
>gi|406990533|gb|EKE10185.1| hypothetical protein ACD_16C00073G0009 [uncultured bacterium]
Length = 482
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 9/313 (2%)
Query: 544 QLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILV 603
+L PA + FST ++ E ++ A +A A L L + L +E+ + + ++
Sbjct: 114 KLGPAFIHRQTMANAMRFSTTELAELEQKIMGALDQALAIELRLFQDLVNEVVARASNII 173
Query: 604 FASMLLVIGKALFAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSA 660
+ L +H + +V PAL + ++ G + L P E
Sbjct: 174 ETAHALAALDVAASHAFLATEKNYVKPALDETLAFDIIGGRHPVVEALLP-----QEIPF 228
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N + L+LLTGPN GKS+ LR +L+ G+ VPA+ A I D I + +
Sbjct: 229 IPNDCRLNGLWLLTGPNMAGKSTFLRQNALIALMAHMGMYVPAQKAHIGIMDRIFSRVGA 288
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D A G+S+F VEM+E +I+ T RS +++DEI RGT T G IA + +E L ++
Sbjct: 289 SDDLARGRSTFMVEMTETATILNQATPRSFIILDEIGRGTATFDGLSIAWACVEHLVHVN 348
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
+ +TH H + +L + + Q + ++V G +S K
Sbjct: 349 QARSLFATHYHELTALETSEDEVNCYTVKIREWEDQIIFLHEIVKGTADKSYGIHVGKLA 408
Query: 840 GVPETIIQRAEDL 852
G+P ++++RAE++
Sbjct: 409 GLPPSVVKRAEEV 421
>gi|270291960|ref|ZP_06198175.1| DNA mismatch repair protein HexA [Streptococcus sp. M143]
gi|270279488|gb|EFA25330.1| DNA mismatch repair protein HexA [Streptococcus sp. M143]
Length = 857
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 106/198 (53%), Gaps = 4/198 (2%)
Query: 659 SAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S + N++ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI
Sbjct: 596 SYIPNSIQMSEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIF 655
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE
Sbjct: 656 TRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEY 715
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ ++IG + +TH H + SL +++ + T G K+ G +S
Sbjct: 716 IHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQGGHVTFLHKIEPGPADKSYGIH 775
Query: 835 TAKREGVPETIIQRAEDL 852
AK G+P ++ RA+ +
Sbjct: 776 VAKIAGLPGELLARADKI 793
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 33 NLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGG 89
N+ L G + + K ++P LL R+GDFYE ++A ++E + L
Sbjct: 13 NMTTEKLSPGMQQY--VDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNK 69
Query: 90 LRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
IP AG P + +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 70 NAENPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 127
>gi|222151137|ref|YP_002560291.1| DNA mismatch repair protein MutS [Macrococcus caseolyticus
JCSC5402]
gi|254766632|sp|B9EBI4.1|MUTS_MACCJ RecName: Full=DNA mismatch repair protein MutS
gi|222120260|dbj|BAH17595.1| DNA mismatch repair protein MutS [Macrococcus caseolyticus
JCSC5402]
Length = 846
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D ++L+TGPN GKS+ +R + S++ G VPA A +P FD I + + D
Sbjct: 585 DHTFIYLITGPNMSGKSTYMRQVALISIMAQMGAFVPASYAEVPIFDQIFTRIGAADDLV 644
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGI 784
G+S+F VEM E ++ + T SL++ DEI RGT T G +A S+IE + N IG +
Sbjct: 645 SGQSTFMVEMLEAKNALQNATDNSLIIFDEIGRGTSTYDGLSLAQSMIEYVHNKIGAKTL 704
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
STH H + L + + + +G+ + K++ G S AK +P
Sbjct: 705 FSTHYHELVDLEQTLDGLNNIHVAAKEYNGELIFLHKVMPGAVEHSYGIHVAKLAQLPAE 764
Query: 845 IIQRAEDL 852
II+R+ +L
Sbjct: 765 IIERSSEL 772
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ LQ K ++ +L R+GDFYE DA + + + + +IP G P + +
Sbjct: 10 QYLQMKEQYKDCILFFRLGDFYEMFYEDAELTAKELEITLTRRDKKNNIPMCGVPHHSAK 69
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+++ P Q + R + PG+
Sbjct: 70 VYIERLIEKGYKVAIAEQMEDPKQVKGMVKREVVKIITPGT 110
>gi|403178118|ref|XP_003336563.2| hypothetical protein PGTG_17874 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375173346|gb|EFP92144.2| hypothetical protein PGTG_17874 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1135
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 98/183 (53%), Gaps = 3/183 (1%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
+ LLTGPN GKS+LLR C A++L G VPAESA I D I M + D S
Sbjct: 879 MILLTGPNMAGKSTLLRMTCVATILAQIGCYVPAESAVISPVDRICTRMGASDHIFAHAS 938
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F+VEM + R I+ TS+SLV++DE+ RGT T G IA +++ L + CLG +TH
Sbjct: 939 TFKVEMDDARKILKEATSKSLVILDELGRGTSTFDGHAIAFAVLHRLATHSNCLGFFATH 998
Query: 789 LHGIFSLPLKIKNAAYKAMGT--EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
+ N A K M T + + + V +KL G+ S AK G+P I+
Sbjct: 999 YSALTEDFRAHANIATKYMLTNVDEVTREVVFLYKLSSGVSPRSYGPHVAKMAGIPSKIV 1058
Query: 847 QRA 849
QRA
Sbjct: 1059 QRA 1061
>gi|306834546|ref|ZP_07467659.1| DNA mismatch repair protein MutS [Streptococcus bovis ATCC 700338]
gi|296777692|gb|ADH43109.1| DNA mismatch repair protein MutS [uncultured bacterium MID12]
gi|304423348|gb|EFM26501.1| DNA mismatch repair protein MutS [Streptococcus bovis ATCC 700338]
Length = 856
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G V AES ++P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLALTVIMAQMGSYVAAESVNLPVFDAIFTRIGAADDLISGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + +S+SL+L DE+ RGT T G +A SIIE + D+IG + +TH H
Sbjct: 659 MVEMMEANQAIKRASSQSLILFDELGRGTATYDGMALAQSIIEYIHDHIGAKTMFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L + + + T +G K+ +G +S AK G+PE ++QRA+
Sbjct: 719 ELTALSTILTHLVNVHVATLEKNGDVTFLHKIAEGPADKSYGVHVAKIAGLPEELLQRAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQQYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|433445606|ref|ZP_20409956.1| DNA mismatch repair protein MutS [Anoxybacillus flavithermus
TNO-09.006]
gi|432001020|gb|ELK21907.1| DNA mismatch repair protein MutS [Anoxybacillus flavithermus
TNO-09.006]
Length = 854
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 9/207 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ + L+TGPN GKS+ +R I +++ G VPAE A +P FD + + + D G
Sbjct: 597 REMLLITGPNMSGKSTYMRQIALTAIMAQIGCFVPAEEAVLPIFDQVFTRIGAADDLVAG 656
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E R + T SL+L DEI RGT T G +A ++IE + D IG + S
Sbjct: 657 QSTFMVEMLEARHAIVHATQNSLILFDEIGRGTSTYDGMALAQAMIEYIHDRIGAKTLFS 716
Query: 787 THLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
TH H + +L ++KN A+ +G + ++ +G +S A+ +P
Sbjct: 717 THYHELTALEQQLPRLKNVHVSAVEE---NGNVIFLHQIKEGPADKSYGIHVAQLAKLPL 773
Query: 844 TIIQRAEDLYIACGVNCVMIAA--REQ 868
+IQRAE + N I REQ
Sbjct: 774 DLIQRAEQILREFETNATPIVKENREQ 800
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L KS++ L R+GDFYE DA + L G E +P G P +
Sbjct: 9 QYLAIKSQYKDAFLFFRLGDFYEMFFEDAIKASQELEITLTSRDGGGEERVPMCGVPYHS 68
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I E+V+ P A+ R + PG+
Sbjct: 69 AAMYIERLIEKGYKVAICEQVEDPKTAKGVVRREVVQLITPGT 111
>gi|407784838|ref|ZP_11131987.1| DNA mismatch repair protein MutS [Celeribacter baekdonensis B30]
gi|407204540|gb|EKE74521.1| DNA mismatch repair protein MutS [Celeribacter baekdonensis B30]
Length = 883
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 23/305 (7%)
Query: 561 FSTLKVEEALERYHEAGAKA---KAKVLELLRGLSSELQTKINIL--VFASMLLVIGKAL 615
F+TL++ E + H AG +A + ++ + L E IN A M L+ A
Sbjct: 514 FTTLELSELETKIHNAGGRALEIEKRLFDTLCMAILERAPAINDASSALAEMDLISSLAD 573
Query: 616 FAHVSEGRRRKWVFPAL---KDIELDGAN------CLKMNGLSPYWFDAAEGSAVHNTVD 666
A +SE W P + + E+ G L+ G S + + + S H D
Sbjct: 574 LA-ISE----DWTRPKVDQGRSFEIIGGRHPVVERALRKQGGSKFVANDCDLSDGH---D 625
Query: 667 MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPAD 726
+++LLTGPN GKS+ LR +L+ G VPA+ A I + + + D A
Sbjct: 626 GAAIWLLTGPNMAGKSTFLRQNALIALIAQAGSFVPAKDAHIGIVSQLFSRVGASDDLAR 685
Query: 727 GKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIV 785
G+S+F VEM E +I+ R+LV++DEI RGT T G IA + +E L ++ C +
Sbjct: 686 GRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYDGLSIAWATLEHLHDVNTCRALF 745
Query: 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
+TH H + SL K+K A + + DG+ + +++ G S + A+ G+P +
Sbjct: 746 ATHYHEMTSLSDKLKGAENATVSAKEWDGEVIFLHEVIKGKADRSYGVQVARLAGLPTAV 805
Query: 846 IQRAE 850
++RA+
Sbjct: 806 VERAK 810
Score = 46.6 bits (109), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L+ KS+ +L R+GDFYE DA + L G + IP G P
Sbjct: 14 QYLEIKSRHRDALLFYRMGDFYEMFFDDAIAASQALDIALTKRGKHAGDDIPMCGVPFHA 73
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L +L R G+ V + E+++ P A+ R ++ +
Sbjct: 74 AETYLLNLIRKGFKVAVCEQLENPADAKKRGAKAV 108
>gi|431763134|ref|ZP_19551687.1| DNA mismatch repair protein mutS [Enterococcus faecium E3548]
gi|430622828|gb|ELB59538.1| DNA mismatch repair protein mutS [Enterococcus faecium E3548]
Length = 881
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 16/245 (6%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
+ L L++KN A+ DG+ V K++DG S AK G+P +++
Sbjct: 726 ELTVLEKELLQLKNVHVGAVEK---DGEVVFLHKMMDGPADRSYGIHVAKIAGLPANLLE 782
Query: 848 RAEDL 852
RA D+
Sbjct: 783 RAADI 787
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDTLIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|418407872|ref|ZP_12981189.1| DNA mismatch repair protein MutS [Agrobacterium tumefaciens 5A]
gi|358005858|gb|EHJ98183.1| DNA mismatch repair protein MutS [Agrobacterium tumefaciens 5A]
Length = 883
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+++LLTGPN GGKS+ LR ++L G VPAE+A I D + + + D A G+
Sbjct: 628 AIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASDDLARGR 687
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVST 787
S+F VEM E +I+ T RSLV++DEI RGT T G IA + +E L + C G+ +T
Sbjct: 688 STFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFAT 747
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ + M + +G + ++ G S + A+ G+P ++++
Sbjct: 748 HFHELTVLSEKLGRLSNATMRVKEWEGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVE 807
Query: 848 RAEDL 852
RA ++
Sbjct: 808 RAREV 812
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + IP G PV
Sbjct: 4 QYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRSLGITLTKRGQHMGQDIPMCGVPVHA 63
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 139
L L GY V + E+V+ P +A+ R S+ +
Sbjct: 64 ADDYLQKLILRGYRVAVCEQVEDPAEAKKRGSKSV 98
>gi|328951574|ref|YP_004368909.1| MutS2 protein [Marinithermus hydrothermalis DSM 14884]
gi|328451898|gb|AEB12799.1| MutS2 protein [Marinithermus hydrothermalis DSM 14884]
Length = 752
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 108/187 (57%), Gaps = 6/187 (3%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ L L+TGPN GGK+ LL+S+ A L+ GL VPA +A +P+ DA+++ + S
Sbjct: 313 RRLLLITGPNMGGKTVLLKSLGLAVLMAQSGLFVPARAAELPWVDALLVDIGDEQSLEHS 372
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVST 787
S+F + + +++ + R+LVLIDE+ GT+ +G ++ +++E L G G+++T
Sbjct: 373 LSTFAAHLVRLEAVLQHASPRALVLIDELGSGTDPMEGAALSQAVLEALLERGARGVITT 432
Query: 788 HLHGIFSLPLKIKNA--AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 845
HL + + ++ + A A E L+ PT++LV G+ S A A++ G PE +
Sbjct: 433 HLTPLKAFAMEREGVLNASMAFDLERLE----PTYRLVLGVPGRSYALAVARQLGFPEAV 488
Query: 846 IQRAEDL 852
++RAE L
Sbjct: 489 LKRAEAL 495
>gi|308271253|emb|CBX27862.1| DNA mismatch repair protein mutS [uncultured Desulfobacterium sp.]
Length = 875
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
+ ++TGPN GKS++LR + L+ G VPA ASI D I + + D+ + G
Sbjct: 614 NQILIITGPNMAGKSTVLRQVALIVLMAHIGSFVPAAKASINITDKIFTRVGALDNLSSG 673
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE---TLDNIGCLGI 784
+S+F VEM E +I+ ++SRSLV++DEI RGT T G IA ++ E LD G +
Sbjct: 674 QSTFMVEMQETANILNNSSSRSLVIMDEIGRGTSTFDGISIAWAVAEYLHDLDGKGVKTL 733
Query: 785 VSTHLHGIFSLPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+TH H + L L ++KN + + E+ D + V KLVDG S + A+ G+
Sbjct: 734 FATHYHELIDLALTKERVKN--FNILVKEWND-EIVFLRKLVDGGTNRSYGIQVARLAGI 790
Query: 842 PETIIQRAEDL 852
P II RA+ +
Sbjct: 791 PGKIIARAKKI 801
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES--IPKAGCPVVN 104
+ L K +P +LL R+GDFYE DA + + + + E +P G P
Sbjct: 12 QYLSIKGNYPDAILLYRMGDFYEMFFEDAEVASKVLEITLTSRNKKEEFPVPMCGVPHKA 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
++ + L NG+ V I ++ + P +A+ R + PG
Sbjct: 72 VKAYIAKLIANGFKVAICDQKENPAEAKGLVKRDVVRVITPG 113
>gi|257887935|ref|ZP_05667588.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,141,733]
gi|430842407|ref|ZP_19460322.1| DNA mismatch repair protein mutS [Enterococcus faecium E1007]
gi|431036500|ref|ZP_19492270.1| DNA mismatch repair protein mutS [Enterococcus faecium E1590]
gi|431753029|ref|ZP_19541707.1| DNA mismatch repair protein mutS [Enterococcus faecium E2620]
gi|257823989|gb|EEV50921.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,141,733]
gi|430493488|gb|ELA69791.1| DNA mismatch repair protein mutS [Enterococcus faecium E1007]
gi|430563040|gb|ELB02271.1| DNA mismatch repair protein mutS [Enterococcus faecium E1590]
gi|430612777|gb|ELB49808.1| DNA mismatch repair protein mutS [Enterococcus faecium E2620]
Length = 881
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADRSYGIHVAKIAGLPANLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDTLIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|421894542|ref|ZP_16325030.1| DNA mismatch repair protein MutS [Pediococcus pentosaceus IE-3]
gi|385272632|emb|CCG90402.1| DNA mismatch repair protein MutS [Pediococcus pentosaceus IE-3]
Length = 873
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 4/195 (2%)
Query: 659 SAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 715
S V N +DM + L+TGPN GKS+ +R + ++ G V A A++P FD I
Sbjct: 590 SYVPNDIDMDDNTDILLITGPNMSGKSTYMRQLALTVIMAQMGCFVAASEATLPIFDQIF 649
Query: 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775
+ + D G+S+F VEM E + TS SLVL DEI RGT T G +A SIIE
Sbjct: 650 TRIGAADDLISGQSTFMVEMQEANRALKDGTSNSLVLFDEIGRGTATYDGMALAQSIIEF 709
Query: 776 L-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 834
+ N+ + STH H + L +++ +G +G V K+ DG +S
Sbjct: 710 IHQNVHAKTLFSTHYHELTELDQSLEHLKNVHVGAVEQNGNLVFLHKMEDGPADKSYGIH 769
Query: 835 TAKREGVPETIIQRA 849
AK G+P+ +++RA
Sbjct: 770 VAKLAGMPDKLLKRA 784
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K+++P L R+GDFYE DA L+E L + IP G P
Sbjct: 13 QYMEIKNQYPDAFLFYRIGDFYELFYDDAVKGSQLLELT-LTARSKNADDPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+++ P A+ R + PG+
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPRTAKGMVKREVIQLVTPGT 115
>gi|329114651|ref|ZP_08243410.1| DNA mismatch repair protein MutS [Acetobacter pomorum DM001]
gi|326696131|gb|EGE47813.1| DNA mismatch repair protein MutS [Acetobacter pomorum DM001]
Length = 946
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 136/299 (45%), Gaps = 13/299 (4%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 620
F+T ++ R EA KA + EL L ++ + ++ V A L V+ L +
Sbjct: 584 FATEELSTLDARITEAAEKASQREKELFSALVEQVLAERSMPVLAQALAVL-DVLQSCAD 642
Query: 621 EGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLT 674
W P + + L+G + P A NT D+ Q + LLT
Sbjct: 643 LAGSGTWCRPEVTEDFAFALEGCRHPVVEAALP-----AGTRFTPNTCDLAPQQRVMLLT 697
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ LR A +L G VPA+ I D + + + D A G+S+F VE
Sbjct: 698 GPNMAGKSTYLRQTALAVILAQGGFPVPADRVRIGVVDQLFSRVGASDDLARGRSTFMVE 757
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF 793
M+E +I+ RSLV++DEI RGT T G IA S++E L ++ C I +TH H +
Sbjct: 758 MTETAAILNQAGPRSLVVVDEIGRGTATLDGLAIAWSVLEALHSSVRCRAIFATHFHELS 817
Query: 794 SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
L + + M GQ V +++ G ++S A+ GVP ++ RA L
Sbjct: 818 RLVDTLPRLSLHTMAVREWRGQIVFLHEVLAGSAKKSWGVHVARLAGVPHAVVDRAGRL 876
>gi|424763746|ref|ZP_18191211.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1337RF]
gi|431757856|ref|ZP_19546485.1| DNA mismatch repair protein mutS [Enterococcus faecium E3083]
gi|402422331|gb|EJV54571.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1337RF]
gi|430618361|gb|ELB55208.1| DNA mismatch repair protein mutS [Enterococcus faecium E3083]
Length = 881
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 10/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLF 671
FA +SE R ++V P L D L +G P + N+V+M + +
Sbjct: 551 FATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMIL 605
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 606 LITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTF 665
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH 790
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 666 MVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYH 725
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ +G DG+ V K++DG S AK G+P +++RA
Sbjct: 726 ELTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADRSYGIHVAKIAGLPANLLERAA 785
Query: 851 DL 852
D+
Sbjct: 786 DI 787
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDTLIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|378824626|ref|YP_005187358.1| DNA mismatch repair protein mutS [Sinorhizobium fredii HH103]
gi|365177678|emb|CCE94533.1| DNA mismatch repair protein mutS [Sinorhizobium fredii HH103]
Length = 915
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 15/304 (4%)
Query: 561 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-----QTKINILVFASMLLVIGKAL 615
F+T ++ E + A +A A LE ++ E+ K L A++ + G A+
Sbjct: 543 FTTTELAELETKIANAADRALAIELEAFEAMAREVVADAEAIKTAALALATLDVSAGLAV 602
Query: 616 FAHVSEGRRRKWVFPALKDIELDGA------NCLKMNGLSPYWFDAAEGSAVHNTVDMQS 669
A E + V + +DG L+ +P+ + + S + + +
Sbjct: 603 LAE--EQNHARPVVDHSRMFLIDGGRHPVVEQALRRQAANPFVANGCDLSP-PDGPEAGA 659
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
++LLTGPN GGKS+ LR +++ G VPA +A + D + + + D A G+S
Sbjct: 660 IWLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPANAAHVGIVDRLFSRVGASDDLARGRS 719
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTH 788
+F VEM E +I+ T RSLV++DEI RGT T G IA + +E L + C G+ +TH
Sbjct: 720 TFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATH 779
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L K+ + M + DG + ++ G S + A+ G+P +++ R
Sbjct: 780 FHELTVLSEKLGRLSNATMRVKEWDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVAR 839
Query: 849 AEDL 852
A D+
Sbjct: 840 ARDV 843
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + IP G PV
Sbjct: 35 QFIEIKANNPDSLLFYRMGDFYELFFQDAVEASRALGITLTKRGQHLGQDIPMCGVPVHA 94
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 137
L L G+ V + E+V+ P +AR R S+
Sbjct: 95 ADDYLQKLIALGFRVAVCEQVEDPAEARKRGSK 127
>gi|336065176|ref|YP_004560035.1| DNA mismatch repair protein [Streptococcus pasteurianus ATCC 43144]
gi|334283376|dbj|BAK30949.1| DNA mismatch repair protein [Streptococcus pasteurianus ATCC 43144]
Length = 856
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G V AES ++P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLALTVIMAQMGSYVAAESVNLPVFDAIFTRIGAADDLISGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + +S+SL+L DE+ RGT T G +A SIIE + D+IG + +TH H
Sbjct: 659 MVEMMEANQAIKRASSQSLILFDELGRGTATYDGMALAQSIIEYIHDHIGAKTMFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L + + + T +G K+ +G +S AK G+PE ++QRA+
Sbjct: 719 ELTALSTILTHLVNVHVATLEKNGDVTFLHKIAEGPADKSYGVHVAKIAGLPEELLQRAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ L K +P LL R+GDFYE DA + L IP AG P +
Sbjct: 12 QYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHS 71
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L GY V I E+++ P QA R + PG+
Sbjct: 72 AQQYIDVLVEMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>gi|146297052|ref|YP_001180823.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|172046026|sp|A4XL47.1|MUTS_CALS8 RecName: Full=DNA mismatch repair protein MutS
gi|145410628|gb|ABP67632.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 863
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 143/301 (47%), Gaps = 20/301 (6%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN-----ILVFASMLLVIGKAL--FAH 618
V E L++ + A+ K++EL L +++ KI I AS + +I AL FAH
Sbjct: 493 VTEELKKLEDEIINAEQKLVELEYELFCQIRDKIESQIERIQKTASCIAIID-ALCSFAH 551
Query: 619 VSEGRRRKWVFPALKD-IELDGAN---CLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLT 674
++ R L D I + KM G S + + E N V ++T
Sbjct: 552 IAIDNRYTKPIVYLGDRIYIKNGRHPVVEKMIGYSNFVPNDTELDNDQNRV-----LIIT 606
Query: 675 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734
GPN GKS+ +R + ++ G VPAE A I D I + + D + G+S+F VE
Sbjct: 607 GPNMAGKSTYMRQVALIVIMAQMGCFVPAEEAQIGIVDKIFSRIGASDDISSGQSTFMVE 666
Query: 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVSTHLHG 791
MSE+ +I+ T +SL++ DE+ RGT T G IA +++E + + IG + +TH H
Sbjct: 667 MSEVANILKNATPKSLIIFDEVGRGTSTYDGLSIAWAVLEFVADKSKIGAKTLFATHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L KI + + + K+V G C S A+ G+PE ++QRAE
Sbjct: 727 LTELEEKISGVKNYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLQRAEQ 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRPESIPKAGCPVVN 104
+ ++ K + +L R+GDFYE DA I + L E P G P +
Sbjct: 10 QYMEIKQRVKDCILFFRLGDFYEMFFDDAIIASKELEIALTARDCGNNEKAPMCGVPYHS 69
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+V+ P A+ R I+ PG+
Sbjct: 70 AHSYIAKLIEKGYKVAICEQVEDPKLAKGVVKREITRIITPGT 112
>gi|347531827|ref|YP_004838590.1| DNA mismatch repair protein MutS [Roseburia hominis A2-183]
gi|345501975|gb|AEN96658.1| DNA mismatch repair protein MutS [Roseburia hominis A2-183]
Length = 874
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 3/198 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPA SA I D I + + D A G+S+F
Sbjct: 611 IITGPNMAGKSTYMRQTALIVLMAQLGSYVPAASAKIGIVDRIFTRVGASDDLASGQSTF 670
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTH 788
VEM+E+ +I+ TS SL+++DEI RGT T G IA +++E + N LG + +TH
Sbjct: 671 MVEMNEVANILRNATSNSLLILDEIGRGTSTYDGLSIAWAVVEHISNPKLLGAKTLFATH 730
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L K+ N + + V K+V G +S + AK GVP+++I R
Sbjct: 731 YHELTELEGKLNNVNNYCVAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDSVIAR 790
Query: 849 AEDLYIACGVNCVMIAAR 866
A+++ N + AR
Sbjct: 791 AKEIVEELSANDITEVAR 808
Score = 46.2 bits (108), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ LQ K ++ +L R+GDFYE DA ++ + L G G+ E P G P
Sbjct: 4 QYLQTKEEYKDCILFYRLGDFYEMFFEDAELVSKELELTLTGKNCGME-ERAPMCGIPYH 62
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFP 163
+ L+ L NG+ V I E+V+ P A+ R + PG+ +LD
Sbjct: 63 AVEGYLNKLVANGHKVAICEQVEDPKLAKGLVKREVIRIVTPGT-----------NLD-- 109
Query: 164 EPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSR 209
M + S++ CI+ + + S+ D T D VT++ + R
Sbjct: 110 --MQALDESKNNYIMCIVYLADRYGV-SIADVSTGDYYVTEVDSER 152
>gi|255013135|ref|ZP_05285261.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_7]
gi|410102598|ref|ZP_11297524.1| DNA mismatch repair protein mutS [Parabacteroides sp. D25]
gi|409238670|gb|EKN31461.1| DNA mismatch repair protein mutS [Parabacteroides sp. D25]
Length = 869
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 25/304 (8%)
Query: 566 VEEALERYHEAGAKAKAKVLELLRGLSSEL-----------QTKINILVFASMLLVIGKA 614
+ E L+ Y E A+ K L L L +EL Q N++ LL KA
Sbjct: 501 ITEELKEYEEKILGAEEKSLALETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKA 560
Query: 615 LFAHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLF 671
A+ K++ P + D I++ G + P + + V+ + Q +
Sbjct: 561 AEAN-------KYIRPIVSDSDKIDIKGGRHPVIEKQLPLG-EPYIANDVYLDDEKQQII 612
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+LLR +L+ G VPAESA I D I + + D+ + G+S+F
Sbjct: 613 IITGPNMAGKSALLRQTALITLMAQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTF 672
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTH 788
VEM+E I+ TSRSLVL DE+ RGT T G IA +I+E + N + +TH
Sbjct: 673 MVEMNEASDILNNMTSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATH 732
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + + K + + + + + KL+ G S AK G+P++I++R
Sbjct: 733 YHELNEMERAFKRIKNYNVSVKEVGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKR 792
Query: 849 AEDL 852
+ ++
Sbjct: 793 SNEI 796
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 41 EGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL------NPFGGLRPES 94
E L + K+K P +LL RVGDFYE G DA I E G+ N G +
Sbjct: 6 ETPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVG----QH 61
Query: 95 IPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 146
+ AG P L L L R G V I ++++ P + R I+ PG
Sbjct: 62 VEMAGFPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG 113
>gi|51892895|ref|YP_075586.1| DNA mismatch repair protein MutS [Symbiobacterium thermophilum IAM
14863]
gi|81692094|sp|Q67NK1.1|MUTS_SYMTH RecName: Full=DNA mismatch repair protein MutS
gi|51856584|dbj|BAD40742.1| DNA mismatch repair protein [Symbiobacterium thermophilum IAM
14863]
Length = 875
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 7/223 (3%)
Query: 637 LDGANCLKMNGLSPYWFDAA--EGSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICA 690
+DG+ L++ G + EG+ V N + + + + L+TGPN GGKS+++R
Sbjct: 581 VDGSTVLELKGSRHPVLERVMEEGAFVPNDLLVDTGENRVLLITGPNMGGKSTVMRQAAL 640
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
A +L G VPAESA I D + + + D A G+S+F VEM+E+ +I+ + T RSL
Sbjct: 641 AVILAQAGSFVPAESAHIGLVDRVFTRVGASDDLATGRSTFMVEMTEVANILHSATERSL 700
Query: 751 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809
V++DE+ RGT T G IA +I E + IGC + +TH H + L + ++
Sbjct: 701 VVLDEVGRGTATFDGLSIAWAITEHIHQAIGCRTLFATHYHELCELEGILPGVKNYSVAV 760
Query: 810 EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
+ KLV G S + + G+P ++++RA ++
Sbjct: 761 MEKGEDIIFLRKLVRGGADRSYGIQVGRLAGLPASVVERAREI 803
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ LQ K ++P +L R+GDFYE DA ++ L G G +P AG P
Sbjct: 12 QYLQIKEQYPDCILFYRLGDFYETFMDDAELVARELELVLTGRDAGKDMGRVPMAGIPYH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I ++++ P +A+ R ++ PG+
Sbjct: 72 AAEAYIARLIEKGYKVAICDQLEDPKKAKGLVKRDVTRVVTPGT 115
>gi|417858726|ref|ZP_12503783.1| DNA mismatch repair protein mutS [Agrobacterium tumefaciens F2]
gi|338824730|gb|EGP58697.1| DNA mismatch repair protein mutS [Agrobacterium tumefaciens F2]
Length = 904
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+++LLTGPN GGKS+ LR ++L G VPAE+A I D + + + D A G+
Sbjct: 649 AIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASDDLARGR 708
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVST 787
S+F VEM E +I+ T RSLV++DEI RGT T G IA + +E L + C G+ +T
Sbjct: 709 STFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFAT 768
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ + M + +G + ++ G S + A+ G+P ++++
Sbjct: 769 HFHELTVLSEKLGRLSNATMRVKEWEGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVE 828
Query: 848 RAEDL 852
RA ++
Sbjct: 829 RAREV 833
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G IP G PV
Sbjct: 25 QYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRSLGITLTKRGQHMGYDIPMCGVPVHA 84
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 137
L L GY V + E+V+ P +A+ R S+
Sbjct: 85 ADDYLQKLILRGYRVAVCEQVEDPAEAKKRGSK 117
>gi|257413988|ref|ZP_04744892.2| DNA mismatch repair protein MutS [Roseburia intestinalis L1-82]
gi|257201595|gb|EEU99879.1| DNA mismatch repair protein MutS [Roseburia intestinalis L1-82]
Length = 900
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 3/204 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPA SA I D I + + D A G+S+F
Sbjct: 636 IITGPNMAGKSTYMRQAALIVLMAQIGSFVPATSAKIGIVDRIFTRVGASDDLASGQSTF 695
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVSTH 788
VEM+E+ +I+ TS SL+++DEI RGT T G IA +++E + N +G + +TH
Sbjct: 696 MVEMNEVANILRNATSNSLLVLDEIGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATH 755
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L K+ N + + V K+V G +S + AK GVP+++I+R
Sbjct: 756 YHELTELEGKLNNVHNYCIAVKEKGDDIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIER 815
Query: 849 AEDLYIACGVNCVMIAAREQPPPS 872
A+++ N + + P +
Sbjct: 816 AKEIVEELSANDITSVTKNITPAT 839
Score = 47.0 bits (110), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGL--RPESIPKAGCPVVN 104
+ L+ K ++ +L R+GDFYE DA ++ + L G E P G P
Sbjct: 29 QYLKTKEEYKDCILFYRLGDFYEMFFDDAIVVSKELELTLTGKSCGAEERAPMCGVPYHA 88
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPE 164
+ L+ L NG+ V I E+V+ P A+ R + PG+
Sbjct: 89 VEGYLNKLVANGHKVAICEQVEDPKLAKGLVKREVIRIVTPGT---------------NT 133
Query: 165 PMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSR 209
M + S++ CI+ + + SL D T D VT++ T R
Sbjct: 134 DMQALDESKNNYIMCIVYLADKYGI-SLADISTGDYFVTEVDTER 177
>gi|448534841|ref|ZP_21621938.1| DNA mismatch repair protein MutS [Halorubrum hochstenium ATCC
700873]
gi|445703992|gb|ELZ55912.1| DNA mismatch repair protein MutS [Halorubrum hochstenium ATCC
700873]
Length = 981
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 657 EGSAVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
E S V N D+ S+ ++TGPN GKS+ +RS+ A +L G VPA++AS+P FD +
Sbjct: 639 EESFVPNDADLPRGSVAVITGPNMSGKSTYMRSVALAVVLAQTGSFVPAQAASLPVFDRV 698
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D A G+S+F EMSE+ I+ SLVL+DE+ RGT T G IA + E
Sbjct: 699 FTRVGASDDIAGGQSTFMREMSELTEILHDAGPDSLVLLDEVGRGTATTDGRAIARAAAE 758
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + DG ++V G S
Sbjct: 759 FLHDELGATALFATHYHELTDLADERERVFNLHFTATREDGDVTFLHRVVPGASSSSYGV 818
Query: 834 ETAKREGVPETIIQRAEDLYIA 855
E A+ GVP ++ RA DL A
Sbjct: 819 EVAELAGVPGPVVDRARDLVAA 840
>gi|430834798|ref|ZP_19452800.1| DNA mismatch repair protein mutS [Enterococcus faecium E0679]
gi|430484867|gb|ELA61814.1| DNA mismatch repair protein mutS [Enterococcus faecium E0679]
Length = 881
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--F 616
E F T +++E + EA K+ +L + E++ I L + + L F
Sbjct: 492 ERFITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSF 551
Query: 617 AHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFL 672
A +SE R ++V P L D L +G P + N+V+M + + L
Sbjct: 552 ATISE--RYQYVRPELVS---DKHQLLIKDGRHPVVEKVLGHQEYIPNSVEMAEDEMILL 606
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
+TGPN GKS+ +R + L+ G VPA+ A +P FD I + + D G+S+F
Sbjct: 607 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDWIFTRIGASDDLIAGQSTFM 666
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHG 791
VEM E + T SL+L DE+ RGT T G +A +IIE + ++ + STH H
Sbjct: 667 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 726
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 851
+ L ++ +G DG+ V K++DG +S AK G+P +++RA D
Sbjct: 727 LTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAAD 786
Query: 852 L 852
+
Sbjct: 787 I 787
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++ L R+GDFYE I A L+E L E IP G P
Sbjct: 13 QYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELT-LTSRNRNAEEPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V I E+V+ P + R + PG+
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDPKTTKGMVKREVIQLVTPGT 115
>gi|422872497|ref|ZP_16918990.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1087]
gi|328944747|gb|EGG38908.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1087]
Length = 849
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + ++ G VPA+SAS+P FDAI + + D G+S+F
Sbjct: 599 LITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTF 658
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEM E + + RSL+L DE+ RGT T G +A +IIE + + G + +TH H
Sbjct: 659 MVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYH 718
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L +++ + T DGQ K+ G +S AK G+PE +++RA+
Sbjct: 719 ELTALEDSLEHLENVHVATLENDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERAD 778
Query: 851 DL 852
+
Sbjct: 779 SI 780
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEIS-LTSRNKNAENPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L +GY V I E+++ P +A+ R + PG+
Sbjct: 71 SAQQYIDVLVESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGT 114
>gi|294507623|ref|YP_003571681.1| DNA mismatch repair protein MutS [Salinibacter ruber M8]
gi|294343951|emb|CBH24729.1| DNA mismatch repair protein MutS [Salinibacter ruber M8]
Length = 903
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D + + ++TGPN GKS LR + LL G VPAE+A I D I + + D+ A
Sbjct: 620 DDEQVLIITGPNMAGKSVALRQVGLIVLLAQVGSFVPAEAAQIGVVDRIFTRVGASDNLA 679
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCL 782
G+S+F VEM+E +I+ T+RSL+L DE+ RGT T G IA +I+E L +
Sbjct: 680 AGESTFLVEMNEAANILNNATARSLILFDEVGRGTSTFDGLSIAWAIVEYLHERPEVAAR 739
Query: 783 GIVSTHLHGIFSLPLKIKNA-AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 841
+ +TH H + ++ +++ Y+ +E+ +G+ V KL+ G S E AK G+
Sbjct: 740 TLFATHYHELNAMADRLERVHNYRIQVSEH-EGEIVFLRKLIPGGADHSYGIEVAKMAGL 798
Query: 842 PETIIQRA-------EDLYIACGVNCVMIAAREQPP 870
P+ +I RA E ++ G + A E PP
Sbjct: 799 PDAVIARAREVLQNLESQHLEVGADEADGAPSEDPP 834
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCP 101
L + + K + P+ +LL R+GDFYE+ DA + G L + +P AG P
Sbjct: 14 LMRQYYKIKERHPKAILLFRMGDFYESFDDDAKTVSRLLGITLTERNNGDADDVPMAGFP 73
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQ 126
L L L R+G V I E+V+
Sbjct: 74 HHALDSHLPKLIRSGLRVAICEQVE 98
>gi|194468323|ref|ZP_03074309.1| DNA mismatch repair protein MutS [Lactobacillus reuteri 100-23]
gi|194453176|gb|EDX42074.1| DNA mismatch repair protein MutS [Lactobacillus reuteri 100-23]
Length = 881
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 1/183 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+ L+TGPN GKS+ +R + +++ G VPA+SA +P FD + + + D G+
Sbjct: 599 DILLITGPNMSGKSTYMRQLALIAVMAQIGCFVPAKSAELPIFDQVFTRIGAADDLISGE 658
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 787
S+F VEM E + +T T RSL+L DEI RGT T G +A +IIE + ++ + ST
Sbjct: 659 STFMVEMMEANNALTHATDRSLILFDEIGRGTATYDGMALAQAIIEYVHQHVRAKTLFST 718
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + +L + +G DG+ V K+ G +S AK G+P ++++
Sbjct: 719 HYHELTALESSLARLKNVHVGATEKDGELVFLHKVSAGPADKSYGIHVAKLAGMPSSLLK 778
Query: 848 RAE 850
RA+
Sbjct: 779 RAD 781
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVE-------YAGLNPFGGLRPESIPKAG 99
+ K ++P L R+GDFYE DA L+E ++ NP IP G
Sbjct: 14 KVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNP--------IPMCG 65
Query: 100 CPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
P + +D L GY V I E+++ P +A+ R ++ PG+
Sbjct: 66 VPHRAVNNYIDILIDKGYKVAICEQMEDPKKAKGMVKRAVTRLITPGT 113
>gi|291536168|emb|CBL09280.1| DNA mismatch repair protein MutS [Roseburia intestinalis M50/1]
Length = 853
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 3/204 (1%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
++TGPN GKS+ +R L+ G VPA SA I D I + + D A G+S+F
Sbjct: 636 IITGPNMAGKSTYMRQAALIVLMAQIGSFVPATSAKIGIVDRIFTRVGASDDLASGQSTF 695
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVSTH 788
VEM+E+ +I+ TS SL+++DEI RGT T G IA +++E + N +G + +TH
Sbjct: 696 MVEMNEVANILRNATSNSLLVLDEIGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATH 755
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + L K+ N + + V K+V G +S + AK GVP+++I+R
Sbjct: 756 YHELTELEGKLNNVHNYCIAVKEKGDDIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIER 815
Query: 849 AEDLYIACGVNCVMIAAREQPPPS 872
A+++ N + + P +
Sbjct: 816 AKEIVEELSANDITSVTKNITPAT 839
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGL--RPESIPKAGCPVVN 104
+ L+ K ++ +L R+GDFYE DA ++ + L G E P G P
Sbjct: 29 QYLKTKEEYKDCILFYRLGDFYEMFFDDAIVVSKELELTLTGKSCGAEERAPMCGVPYHA 88
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPE 164
+ L+ L NG+ V I E+V+ P A+ R + PG+
Sbjct: 89 VEGYLNKLVANGHKVAICEQVEDPKLAKGLVKREVIRIVTPGT---------------NT 133
Query: 165 PMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSR 209
M + S++ CI+ + + SL D T D VT++ T R
Sbjct: 134 DMQALDESKNNYIMCIVYLADKYGI-SLADISTGDYFVTEVDTER 177
>gi|269121342|ref|YP_003309519.1| DNA mismatch repair protein MutS [Sebaldella termitidis ATCC 33386]
gi|268615220|gb|ACZ09588.1| DNA mismatch repair protein MutS [Sebaldella termitidis ATCC 33386]
Length = 868
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 138/295 (46%), Gaps = 23/295 (7%)
Query: 566 VEEALERYHEAGAKAKAKVLE----LLRGLSSELQTKINILVFASMLLVIGKALFAHVSE 621
+ E L+ Y + +K+KV E L + +S +++ K +L S +L + +
Sbjct: 501 ITEELKEYEDKIINSKSKVEEIEYYLFKEISGKIKEKREVLNKLSEILAYLDVIISFAVT 560
Query: 622 GRRRKWVFPALKD---IELDGAN---CLKMNGLSPYWFDAAEGSAVHNTVDMQ---SLFL 672
+V P D IE++ K+ G + V N V M + +
Sbjct: 561 AIENNYVRPEFVDDYVIEIEEGRHPVVEKLIGREDF---------VSNNVRMDREGNFII 611
Query: 673 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732
LTGPN GKS+ ++ I +L G VPA+SA + D I+ + + D G+S+F
Sbjct: 612 LTGPNMAGKSTYMKQIGLIQILAQIGSYVPAQSARLSIVDKILTRIGAADDIVSGQSTFM 671
Query: 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 791
VEMSE+ +I+ + T RSL+++DE+ RGT T G IA +I E + D I I +TH H
Sbjct: 672 VEMSEVSNIINSATERSLIILDEVGRGTSTFDGISIATAITEYIHDKIKAKTIFATHYHE 731
Query: 792 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
+ L K + + E V K+V G +S E A+ G+P+ ++
Sbjct: 732 LTELEEKFDSILNYRIEVEERSNSVVFLRKIVRGGADKSYGIEVARLAGLPKEVL 786
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL-----NPFGGLRPE 93
+ E L + + K +L R+GDFYE DA + GL N G+
Sbjct: 1 MSETPLMKQYREIKENHQDSILFFRLGDFYEMFFQDAVTASKELGLTLTSRNKEKGM--- 57
Query: 94 SIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+P AG P + + L GY V I E+V+ P + R + PG+
Sbjct: 58 DVPLAGIPYHSSASYITKLVNKGYKVAICEQVEDPRTVKGIVKREVVKIVTPGT 111
>gi|440225343|ref|YP_007332434.1| DNA mismatch repair protein MutS [Rhizobium tropici CIAT 899]
gi|440036854|gb|AGB69888.1| DNA mismatch repair protein MutS [Rhizobium tropici CIAT 899]
Length = 913
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 105/206 (50%), Gaps = 9/206 (4%)
Query: 656 AEGSAVHNTVDMQ--------SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707
A G V N D+ +++LLTGPN GGKS+ LR ++L G VPA SA
Sbjct: 635 AGGPFVANNCDLSPKSDGKDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFVPAASAH 694
Query: 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTC 767
I D + + + D A G+S+F VEM E +I+ T RSLV++DEI RGT T G
Sbjct: 695 IGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATERSLVILDEIGRGTATFDGLS 754
Query: 768 IAGSIIETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGI 826
IA + +E L C G+ +TH H + L K+ + M + DG + ++ G
Sbjct: 755 IAWAAVEHLHEANRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWDGDVIFLHEVGPGA 814
Query: 827 CRESLAFETAKREGVPETIIQRAEDL 852
S + A+ G+P +++ RA D+
Sbjct: 815 ADRSYGIQVARLAGLPASVVARARDV 840
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ P +L R+GDFYE DA G L G + IP G PV
Sbjct: 32 QYIEIKANNPGSLLFYRMGDFYELFFEDAVDASRALGITLTKRGQHMGQDIPMCGVPVHA 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L G+ V + E+V+ P +A+ R
Sbjct: 92 ADDYLQKLIALGFRVAVCEQVEDPAEAKKR 121
>gi|150395258|ref|YP_001325725.1| DNA mismatch repair protein MutS [Sinorhizobium medicae WSM419]
gi|166232140|sp|A6U5G0.1|MUTS_SINMW RecName: Full=DNA mismatch repair protein MutS
gi|150026773|gb|ABR58890.1| DNA mismatch repair protein MutS [Sinorhizobium medicae WSM419]
Length = 915
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 1/185 (0%)
Query: 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 728
+++LLTGPN GGKS+ LR +++ G VPA +A I D + + + D A G+
Sbjct: 659 AIWLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPASAAHIGVVDRLFSRVGASDDLARGR 718
Query: 729 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVST 787
S+F VEM E +I+ T RSLV++DEI RGT T G IA + +E L + C G+ +T
Sbjct: 719 STFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFAT 778
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H + L K+ + M + DG + ++ G S + A+ G+P +++
Sbjct: 779 HFHELTVLSEKLGRLSNATMRVKEWDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVA 838
Query: 848 RAEDL 852
RA D+
Sbjct: 839 RARDV 843
Score = 42.7 bits (99), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ ++ K+ +L R+GDFYE DA G L G + IP G PV
Sbjct: 35 QFIEIKANNRDSLLFYRMGDFYELFFQDAVEASRALGITLTKRGQHMGQEIPMCGVPVHA 94
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L GY V + E+V+ P +A+ R
Sbjct: 95 ADDYLQKLIALGYRVAVCEQVEDPAEAKKR 124
>gi|223939292|ref|ZP_03631172.1| DNA mismatch repair protein MutS [bacterium Ellin514]
gi|223892005|gb|EEF58486.1| DNA mismatch repair protein MutS [bacterium Ellin514]
Length = 876
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 1/182 (0%)
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + LL G +PA A + D I + + D A G+S+F
Sbjct: 653 LITGPNMAGKSTYIRQVALLVLLAHTGSFIPAAEARVDLVDRIFTRIGASDDLARGQSTF 712
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790
VEMSE +I+ T++SL+++DEI RGT T G +A SI+E L N +G + +TH H
Sbjct: 713 MVEMSETANILNNATAKSLIILDEIGRGTSTFDGLSLAWSIVEHLHNQVGAKTLFATHYH 772
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ L ++ + + Q V K+++G +S + A+ GVP+ +I+RA+
Sbjct: 773 ELTELAGRLPRIKNYNVAVREWNDQIVFLRKIIEGGTDKSYGIQVARLAGVPKAVIERAK 832
Query: 851 DL 852
++
Sbjct: 833 EI 834
>gi|237741668|ref|ZP_04572149.1| DNA mismatch repair protein mutS [Fusobacterium sp. 4_1_13]
gi|294785721|ref|ZP_06751009.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_27]
gi|229429316|gb|EEO39528.1| DNA mismatch repair protein mutS [Fusobacterium sp. 4_1_13]
gi|294487435|gb|EFG34797.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_27]
Length = 896
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 154/297 (51%), Gaps = 29/297 (9%)
Query: 570 LERYHEAGAKAKAKV----LELLRGLSSELQTKINILV-----FASMLLVIGKALFAHVS 620
L+ Y E AK+K+ EL + L+SE++ I+ L A++ +V + F+H++
Sbjct: 529 LKEYEEKVITAKSKIEALEYELFKQLTSEIKEHIDSLYKLANRIANLDIV---SNFSHIA 585
Query: 621 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTV---DMQSLFLLTG 675
+ +V P E+ + L++ G + A G+ V N + D +L +LTG
Sbjct: 586 --TKNSYVKP-----EISEEDILEIKGGRHPIVETLIASGTYVKNDIVLDDKNNLIILTG 638
Query: 676 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735
PN GKS+ ++ + ++ G V A+ A IP D I + + D+ G+S+F +EM
Sbjct: 639 PNMSGKSTYMKQVALNIIMAHIGSYVAADYAKIPIVDKIFTRVGASDNLLTGQSTFMLEM 698
Query: 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS 794
+E+ SI+ + T +S +++DEI RGT T G IA +I E + N IG I +TH H +
Sbjct: 699 TEVASILNSATKKSFIVLDEIGRGTSTYDGISIATAITEYIHNVIGAKTIFATHYHELTE 758
Query: 795 LPLKIKNA-AYKAMGTEYLDGQTVPTWK-LVDGICRESLAFETAKREGVPETIIQRA 849
L +++ A ++ E DG+ V + +V G +S E A+ GVP+ ++ R+
Sbjct: 759 LEKELERAINFRVEVKE--DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRS 813
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN--PFGGLRPESIPKAGCPVVNLRQ 107
+ K + E+L+ R+GDFYE DA I + GL + + +P AG P ++
Sbjct: 32 KIKKDYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDVPLAGVPYHSVAS 91
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GYS+ I ++V+ P A R ++ PG+
Sbjct: 92 YIAKLVEKGYSIAICDQVEDPKSATGIVKREVTRVITPGT 131
>gi|448298648|ref|ZP_21488676.1| DNA mismatch repair protein MutS [Natronorubrum tibetense GA33]
gi|445591318|gb|ELY45524.1| DNA mismatch repair protein MutS [Natronorubrum tibetense GA33]
Length = 911
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 1/186 (0%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
Q L ++TGPN GKS+ +R + +LL G VPA +A + D I + + D A G
Sbjct: 655 QRLAVITGPNMSGKSTYMRQVAQITLLAQVGSFVPARAARLTPADRIFTRVGASDDIAGG 714
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 786
+S+F VEM E+ +I+ SLVL+DE+ RGT TA G IA +I E L D +G + +
Sbjct: 715 RSTFMVEMDELATILREADEHSLVLLDEVGRGTSTADGLAIAQAITEHLHDIVGATALFA 774
Query: 787 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 846
TH H + L ++ A E +DG+ V + G S E A GVP ++
Sbjct: 775 THHHPLTELADDLEAAFTLHFEVEQVDGEVVFHHDIAPGAATGSYGVEVATAAGVPADVV 834
Query: 847 QRAEDL 852
+R+ +L
Sbjct: 835 ERSREL 840
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,310,304,621
Number of Sequences: 23463169
Number of extensions: 651311185
Number of successful extensions: 1756414
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8463
Number of HSP's successfully gapped in prelim test: 1827
Number of HSP's that attempted gapping in prelim test: 1730118
Number of HSP's gapped (non-prelim): 16833
length of query: 968
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 815
effective length of database: 8,769,330,510
effective search space: 7147004365650
effective search space used: 7147004365650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)