BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002090
(968 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84LK0|MSH1_ARATH DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis
thaliana GN=MSH1 PE=1 SV=1
Length = 1118
Score = 1567 bits (4057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1027 (73%), Positives = 853/1027 (83%), Gaps = 68/1027 (6%)
Query: 1 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 60
+WW+ERLQ C+KPSTL L+ RL Y+NLLGLD +L+NGSLK+G LNWEMLQFKS+FPREVL
Sbjct: 81 VWWKERLQTCKKPSTLQLIERLMYTNLLGLDPSLRNGSLKDGNLNWEMLQFKSRFPREVL 140
Query: 61 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVC 120
LCRVG+FYEAIGIDACILVEYAGLNPFGGLR +SIPKAGCP++NLRQTLDDLTRNGYSVC
Sbjct: 141 LCRVGEFYEAIGIDACILVEYAGLNPFGGLRSDSIPKAGCPIMNLRQTLDDLTRNGYSVC 200
Query: 121 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCI 180
IVEEVQGPT ARSRK RFISGHAHPGSPYV+GLVG+DHDLDFP+PMPV+G+SRSA+GYC+
Sbjct: 201 IVEEVQGPTPARSRKGRFISGHAHPGSPYVYGLVGVDHDLDFPDPMPVVGISRSARGYCM 260
Query: 181 ISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWG 240
ISI ETMK YSL+DGLTE+ALVTKLRT R HHLFLH SLR N SGT RWGE+GEGGLLWG
Sbjct: 261 ISIFETMKAYSLDDGLTEEALVTKLRTRRCHHLFLHASLRHNASGTCRWGEFGEGGLLWG 320
Query: 241 ECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIP 300
EC +R+FEWFEGD + ELL +VK++YGL++EV+FRNV V +NRPRPLHLGTATQIGA+P
Sbjct: 321 ECSSRNFEWFEGDTLSELLSRVKDVYGLDDEVSFRNVNVPSKNRPRPLHLGTATQIGALP 380
Query: 301 TEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTC- 359
TEGIPCLLKVLLPS CSGLP LYVRDLLLNPPAY+IA IQ CKLMS VTCSIPEFTC
Sbjct: 381 TEGIPCLLKVLLPSTCSGLPSLYVRDLLLNPPAYDIALKIQETCKLMSTVTCSIPEFTCV 440
Query: 360 ----LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE 415
LVKLLE REAN+IEFCRIKNVLD++LHM+ ++EL EIL+LLMDPTWVATGLKIDF+
Sbjct: 441 SSAKLVKLLEQREANYIEFCRIKNVLDDVLHMHRHAELVEILKLLMDPTWVATGLKIDFD 500
Query: 416 TLVEECRLASVRIGEMISLD-GESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIA 474
T V EC AS IGEMISLD ES Q + DN+P+EFF DMES+W+GRVK IHIE EI
Sbjct: 501 TFVNECHWASDTIGEMISLDENESHQNVSKCDNVPNEFFYDMESSWRGRVKGIHIEEEIT 560
Query: 475 EVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWA 534
+VE +AEALSLAV EDF PIISRIKATTA LGGPKGEI YAREHE+VWFKGK+F P++WA
Sbjct: 561 QVEKSAEALSLAVAEDFHPIISRIKATTASLGGPKGEIAYAREHESVWFKGKRFTPSIWA 620
Query: 535 STPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSE 594
T GE+QIKQLKPA+DSKG+KVGEEWF+T KVE AL RYHEA AKA+VLELLR LS +
Sbjct: 621 GTAGEDQIKQLKPALDSKGKKVGEEWFTTPKVEIALVRYHEASENAKARVLELLRELSVK 680
Query: 595 LQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE-------LDGANCLKMNG 647
LQTKIN+LVFASMLLVI KALF+H EGRRRKWVFP L LDGA+ +K+ G
Sbjct: 681 LQTKINVLVFASMLLVISKALFSHACEGRRRKWVFPTLVGFSLDEGAKPLDGASRMKLTG 740
Query: 648 LSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707
LSPYWFD + G+AVHNTVDMQSLFLLTGPNGGGKSSLLRSICAA+LLGI GLMVPAESA
Sbjct: 741 LSPYWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESAC 800
Query: 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTC 767
IP+FD+IMLHMKSYDSP DGKSSFQVEMSEIRSIV+ TSRSLVLIDEICRGTETAKGTC
Sbjct: 801 IPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTC 860
Query: 768 IAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGIC 827
IAGS++E+LD GCLGIVSTHLHGIFSLPL KN YKAMG E ++GQT PTWKL DG+C
Sbjct: 861 IAGSVVESLDTSGCLGIVSTHLHGIFSLPLTAKNITYKAMGAENVEGQTKPTWKLTDGVC 920
Query: 828 RESLAFETAKREGVPETIIQRAEDLYIA-------------------------------- 855
RESLAFETAKREGVPE++IQRAE LY++
Sbjct: 921 RESLAFETAKREGVPESVIQRAEALYLSVYAKDASAEVVKPDQIITSSNNDQQIQKPVSS 980
Query: 856 ---------------CG--------VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIG 892
CG + C+ I ARE PPPS +G+SCVYVM RPDK+LYIG
Sbjct: 981 ERSLEKDLAKAIVKICGKKMIEPEAIECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIG 1040
Query: 893 QTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKH 952
QTDDL+GRIRAHR KEG+Q +SFLY +V GKS+ACQ+ETLLINQL+ QG+ LAN+ADGKH
Sbjct: 1041 QTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKH 1100
Query: 953 RNFGTSS 959
RNFGTSS
Sbjct: 1101 RNFGTSS 1107
>sp|A5UZK7|MUTS_ROSS1 DNA mismatch repair protein MutS OS=Roseiflexus sp. (strain RS-1)
GN=mutS PE=3 SV=1
Length = 1085
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 39/396 (9%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN-----ILVFASMLLV 610
GE +F+ + L+RY E +A+ ++++L R + + + +L A M+
Sbjct: 694 TGERYFT-----DELKRYEEIVEQAQQRLIDLERRAFARICDVVTGAGARLLRTARMIAT 748
Query: 611 IGKALFAHVSEGR-RRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS 669
I +FA ++E R ++V P L D + G P + + V N ++M +
Sbjct: 749 ID--VFAALAEAAVRGRYVRPEL----YDDTRLRIVGGRHPVVEQTLDETFVPNDIEMDT 802
Query: 670 ----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ L+TGPN GKS++LR + +L+ G VPA++A I D I + + D A
Sbjct: 803 ETRQICLITGPNMSGKSTVLRQVALIALMAQIGSFVPADAAEIGLVDRIFTRIGAQDDIA 862
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCL 782
G+S+F VEM+E +++ +T RSL+++DE+ RGT T G IA ++IE + N +GC
Sbjct: 863 TGRSTFMVEMTETAALLAQSTRRSLIILDEVGRGTSTYDGMAIAQAVIEYIHNEPRLGCR 922
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L + M DG+ V +L G S A+ G+P
Sbjct: 923 TLFATHYHELTDLERTLPRLKNYHMAATEQDGRVVFLHELRPGGADRSYGIHVAELAGIP 982
Query: 843 ETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLD-GRI 901
+++I+RA +L A R PP V R D + G+ G
Sbjct: 983 QSVIRRASELL----AELERRAPRSAPP---------TVPARGDDRRSAGRASSSGAGAA 1029
Query: 902 RAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQL 937
R +G+ L+ + PG I + + INQL
Sbjct: 1030 RGEQGRTLPDGQLSLFDLAPGPVIEM-LRRIDINQL 1064
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDACILV----------EYAGLNPFGGLRPESIPKAGC 100
K+ P +LL R+GDFYE DA ++ E+A G + + P AG
Sbjct: 32 LKAAHPDAILLYRLGDFYETFDDDAKLVADLLEVTLTYKEFASQK--GRDQKQRCPMAGI 89
Query: 101 PVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARS 133
P + + L GY V I E++ +R+
Sbjct: 90 PYHAVEGYVARLVGAGYRVAIAEQITETPSSRT 122
>sp|A7NPT5|MUTS_ROSCS DNA mismatch repair protein MutS OS=Roseiflexus castenholzii (strain
DSM 13941 / HLO8) GN=mutS PE=3 SV=1
Length = 1088
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 180/395 (45%), Gaps = 38/395 (9%)
Query: 556 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-----QTKINILVFASMLLV 610
GE +F+ + L+RY E +A+ ++++L R + + + +L A +
Sbjct: 698 TGERYFT-----DELKRYEEIVEQAQQRLIDLERRAFARICETLAGAGVRLLRTARTIAT 752
Query: 611 IGKALFAHVSEGR-RRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS 669
I +FA ++E R ++V P L D + G P + + + N ++M +
Sbjct: 753 ID--VFAALAEAAVRGRYVRPEL----YDDTRLRIIGGRHPVVEQTLDETFIPNDIEMDT 806
Query: 670 ----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
+ L+TGPN GKS++LR + +L+ G VPA++A I D I + + D A
Sbjct: 807 ETRQICLITGPNMSGKSTVLRQVALIALMAQIGSFVPADAAEIGVVDRIFTRIGAQDDIA 866
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCL 782
G+S+F VEM+E +++ +T RSL+++DE+ RGT T G IA ++IE + N +GC
Sbjct: 867 TGRSTFMVEMTETAALLAQSTHRSLIILDEVGRGTSTYDGMAIAQAVIEYIHNEPRLGCR 926
Query: 783 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVP 842
+ +TH H + L + M DG+ V +L G S A+ G+P
Sbjct: 927 TLFATHYHELTDLERTLPRLKNYHMAATEQDGRVVFLHELRPGGADRSYGIHVAELAGIP 986
Query: 843 ETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIR 902
+ +I+RA +L A R P P+ RP + + D
Sbjct: 987 QPVIRRATELL----AELERRAPRSTPQPAPERTEERPAAGRPTARSHSAARGD------ 1036
Query: 903 AHRGKEGMQSASFLYFVVPGKSIACQIETLLINQL 937
R +G S L+ + PG I + L INQL
Sbjct: 1037 PPRAPDGQLS---LFDLTPGPVIEM-LRRLDINQL 1067
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDACILV----------EYAGLNPFGGLRPESIPKAGC 100
K+ P +LL R+GDFYE DA ++ E+A G + + P AG
Sbjct: 32 LKAAHPDAILLYRLGDFYETFDDDAKLVADLLEVTLTYKEFASQK--GRDQKQRCPMAGI 89
Query: 101 PVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARS 133
P + + L GY V I E++ +R+
Sbjct: 90 PYHAVEGYVARLVGAGYRVAIAEQMTETPSSRT 122
>sp|Q045Q5|MUTS_LACGA DNA mismatch repair protein MutS OS=Lactobacillus gasseri (strain
ATCC 33323 / DSM 20243) GN=mutS PE=3 SV=1
Length = 857
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P D +D +NG P GS + N V M +F
Sbjct: 550 FATVSE--QNNYVRP---DFTVDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTDIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGCFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREA 783
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>sp|P61666|MUTS_DESVH DNA mismatch repair protein MutS OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=mutS PE=3
SV=1
Length = 905
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 151/305 (49%), Gaps = 19/305 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-QTKINILVFASML--LVIGKAL 615
E F+T +++E E+ A + K L + L + + + +L A ML L ++L
Sbjct: 522 ERFTTERLKELEEKLVSATDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDFWQSL 581
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSL 670
A V+ RR WV P + G + + G P +A +GSA V N + M + L
Sbjct: 582 -ADVA--RRNGWVRPDVHT----GHDIVIREGRHPV-VEAMQGSASFVPNDLRMDEKRRL 633
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS++LR LL G VPA ASI D I + + D+ A G+S+
Sbjct: 634 LLITGPNMAGKSTVLRQTAIICLLAQMGAFVPAREASIGIADRIFSRVGASDNLAQGQST 693
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI---VST 787
F VEM E I+ + RSLV++DEI RGT T G +A +++E L GI +T
Sbjct: 694 FMVEMMETARILRQASKRSLVILDEIGRGTSTFDGMALAWAVVEELTRRAGGGIRTLFAT 753
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H I SL +I + +G V +LV G +S E A+ GVP +++Q
Sbjct: 754 HYHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRLVPGPADKSYGIEVARLAGVPHSVVQ 813
Query: 848 RAEDL 852
RA +L
Sbjct: 814 RAREL 818
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDAC-----ILVEYAGLNPFG 88
+ N S K + + L+ K +P +L R+GDFYE DA + + NP
Sbjct: 1 MTNPSPKLTPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNA 60
Query: 89 GLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L+ P G P + + L GY V I E+++ P +A+ R ++ PG+
Sbjct: 61 ELK---APMCGVPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGT 116
>sp|A1VDD9|MUTS_DESVV DNA mismatch repair protein MutS OS=Desulfovibrio vulgaris subsp.
vulgaris (strain DP4) GN=mutS PE=3 SV=1
Length = 905
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 151/305 (49%), Gaps = 19/305 (6%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-QTKINILVFASML--LVIGKAL 615
E F+T +++E E+ A + K L + L + + + +L A ML L ++L
Sbjct: 522 ERFTTERLKELEEKLVSATDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDFWQSL 581
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSL 670
A V+ RR WV P + G + + G P +A +GSA V N + M + L
Sbjct: 582 -ADVA--RRNGWVRPDVHT----GHDIVIREGRHPV-VEAMQGSASFVPNDLRMDEKRRL 633
Query: 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730
L+TGPN GKS++LR LL G VPA ASI D I + + D+ A G+S+
Sbjct: 634 LLITGPNMAGKSTVLRQTAIICLLAQMGAFVPAREASIGIADRIFSRVGASDNLAQGQST 693
Query: 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI---VST 787
F VEM E I+ + RSLV++DEI RGT T G +A +++E L GI +T
Sbjct: 694 FMVEMMETARILRQASKRSLVILDEIGRGTSTFDGMALAWAVVEELTRRAGGGIRTLFAT 753
Query: 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847
H H I SL +I + +G V +LV G +S E A+ GVP +++Q
Sbjct: 754 HYHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRLVPGPADKSYGIEVARLAGVPHSVVQ 813
Query: 848 RAEDL 852
RA +L
Sbjct: 814 RAREL 818
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 34 LKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDAC-----ILVEYAGLNPFG 88
+ N S K + + L+ K +P +L R+GDFYE DA + + NP
Sbjct: 1 MTNPSPKLTPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNA 60
Query: 89 GLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L+ P G P + + L GY V I E+++ P +A+ R ++ PG+
Sbjct: 61 ELK---APMCGVPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGT 116
>sp|Q30ZX3|MUTS_DESDG DNA mismatch repair protein MutS OS=Desulfovibrio desulfuricans
(strain G20) GN=mutS PE=3 SV=1
Length = 904
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 147/304 (48%), Gaps = 17/304 (5%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-QTKINILVFASMLLVIGKALFA 617
E +++ +++E E+ A K K L+L + L + Q + +L A +L + +
Sbjct: 522 ERYTSERLKELEEKLFSAADKRKTMELKLFQQLREHVAQARPRVLFMADLLATLDH--WQ 579
Query: 618 HVSEGRRR-KWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTV---DMQSLF 671
++E R WV P L D G + + G P +A +G A + N + D + L
Sbjct: 580 GLAEAARHWNWVRPVLHD----GQDIVIREGRHPV-VEAVQGPAGFIPNDLRIDDQRRLL 634
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS++LR +L G VPA A I D I + + D+ A G+S+F
Sbjct: 635 LITGPNMAGKSTVLRQAAIICILAQIGSFVPAREARIGLCDRIFSRVGASDNLAQGQSTF 694
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGIVSTH 788
VEM E I+ T RSLV++DEI RGT T G +A +++E L G + +TH
Sbjct: 695 MVEMMETARILRQATRRSLVILDEIGRGTSTFDGLALAWAVVEELMKKQQAGIRTLFATH 754
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + SL I + + G+ V +LV G S E AK GVP+ ++QR
Sbjct: 755 YHELTSLEGTIPGVHNMNIAIKEWGGEIVFLRRLVPGPSDRSYGVEVAKLAGVPQNVVQR 814
Query: 849 AEDL 852
A +
Sbjct: 815 ARQI 818
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL-----NPFGGLRPESIPKAGCP 101
+ + K+++P +L R+GDFYE DA + + NP +P G P
Sbjct: 14 QYMNIKAEYPDALLFYRMGDFYELFFEDAEVAARELQIALTCRNPNA---ENKVPMCGVP 70
Query: 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQAR 132
+ R + L GY V I E+++ P +A+
Sbjct: 71 HHSARSYISQLVDKGYKVAICEQMEDPREAK 101
>sp|Q9KAC0|MUTS_BACHD DNA mismatch repair protein MutS OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=mutS PE=3 SV=1
Length = 865
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 11/242 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE +V PAL++ D A +K G P G V N VDM+ S+
Sbjct: 548 FATVSETHH--YVRPALQE---DRAIAIK-GGRHPVVERVIPNGEYVANDVDMKDGRSIL 601
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++G G VPA+ A +P FD + + + D A G+S+F
Sbjct: 602 LITGPNMAGKSTYMRQLALIAIMGQIGCFVPADEARLPIFDQVFTRIGAADDLASGQSTF 661
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEM E + + T SL+L+DEI RGT T G +A +IIE + D I + STH H
Sbjct: 662 MVEMLETKYALQKATQNSLILLDEIGRGTSTYDGMALAQAIIEYIHDEIRAKTLFSTHYH 721
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
+ +L ++ + + G V K+VDG S A+ G+P + +RAE
Sbjct: 722 ELTALEKELSDVKNVHVSAVEEQGTVVFLHKVVDGQADRSYGIYVAELAGLPNVVTERAE 781
Query: 851 DL 852
L
Sbjct: 782 TL 783
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GLRPESIPKAGCPVVNL 105
+ L+ K+++ L R+GDFYE DA + + G G E IP G P +
Sbjct: 10 QYLEIKAQYKDAFLFFRLGDFYELFLDDAVKAAQELEITLTGRGKGEERIPMCGVPYHSA 69
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY + I E+V+ P A+ R + PG+
Sbjct: 70 DHYISRLLEKGYKIAICEQVEDPKNAKGVVKREVIKLITPGT 111
>sp|A6W1Q6|MUTS_MARMS DNA mismatch repair protein MutS OS=Marinomonas sp. (strain MWYL1)
GN=mutS PE=3 SV=1
Length = 883
Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 7/238 (2%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D +SL ++TGPN GGKS+ +R I +LL G VPAESASI D I M S D A
Sbjct: 610 DKRSLLMITGPNMGGKSTYMRQIALITLLAHTGCFVPAESASISVVDRIFTRMGSSDDLA 669
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGI 784
G+S+F VEM+E +I+ + SLVL+DE+ RGT T G +A + ++ L N + C +
Sbjct: 670 GGRSTFMVEMTETANILNNASKNSLVLMDEVGRGTSTFDGLSLAWAAVDYLANKLKCYVL 729
Query: 785 VSTHLHGIFSLPLKIKNAAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843
+TH + +L +++NAA + TEY D + V K+ +G +S + A+ GVP
Sbjct: 730 FATHYFELTTLADQLENAANVHLTATEYED-EIVFLHKVHEGPASQSYGLQVAQLAGVPR 788
Query: 844 TII----QRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDL 897
+I Q+ ++L + G++ + S I A +++ K Y Q D+
Sbjct: 789 DVIGHAKQKLKELEVVTGIDLDTKTIETKANSSSIKAKTKEHLVKESKNGYQPQQVDM 846
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 51 FKSKFPREVLLCRVGDFYEAIGIDA-----CILVEYAGLNPFGGLRPESIPKAGCPVVNL 105
KS+ P ++L R+GDFYE DA + + GG+ IP AG P
Sbjct: 19 LKSQHPNQLLFYRMGDFYELFYDDAKRASRLLDITLTARGHSGGI---PIPMAGIPYHAA 75
Query: 106 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L R G SV + E+ P ++ R I+ PG+
Sbjct: 76 ENYIARLVRMGESVVVAEQTGDPATSKGPVERQIARIVTPGT 117
>sp|P61668|MUTS_LACJO DNA mismatch repair protein MutS OS=Lactobacillus johnsonii (strain
CNCM I-12250 / La1 / NCC 533) GN=mutS PE=3 SV=1
Length = 857
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ---SLF 671
FA VSE + +V P + D +NG P GS + N V M ++F
Sbjct: 550 FATVSE--QNNYVRP---NFVTDKQEINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTNIF 604
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R + +++ G VPA+SA++P FD I + + D G+S+F
Sbjct: 605 LITGPNMSGKSTYMRQMALIAIMAQIGSFVPADSATLPIFDQIFTRIGAADDLISGQSTF 664
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 790
VEMSE + T RSLVL DEI RGT T G +AG+I++ L D +G + +TH H
Sbjct: 665 MVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKALFATHYH 724
Query: 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849
+ L +K+ +G +G+ + K++ G +S A+ G+P +++ A
Sbjct: 725 ELTDLDQTLKHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREA 783
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 EIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELT-LTHRSNKTKNPIPMAGVPHLAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 74 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLITPGT 114
>sp|B1YMD7|MUTS_EXIS2 DNA mismatch repair protein MutS OS=Exiguobacterium sibiricum
(strain DSM 17290 / JCM 13490 / 255-15) GN=mutS PE=3
SV=1
Length = 843
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 19/287 (6%)
Query: 577 GAKAKAKVLE--LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKD 634
GA+ K+ LE L + +++T I L S + L A R +V P
Sbjct: 498 GAEEKSITLEYELFCQVRDQVKTHIESLQRVSRRIAELDVLVALAETAERHDYVRP---- 553
Query: 635 IELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICA 690
+ L G N + NG P G V N +++ + + L+TGPN GKS+ +R
Sbjct: 554 VTLTGRNVMIENGRHPVIETVLPRGEYVANGINLNEDREMLLITGPNMSGKSTYMRQFAL 613
Query: 691 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750
+LL G VPA A +P FD I + + D G+S+F VEM E + +T T RSL
Sbjct: 614 IALLHQIGSFVPASRAELPIFDQIFTRIGAADDLVSGQSTFMVEMVETQEALTRATDRSL 673
Query: 751 VLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF----SLPLKIKNAAYK 805
+L+DEI RGT T G +A +I+E + +++G + STH H + S+P ++ N +
Sbjct: 674 ILLDEIGRGTSTYDGMALAQAIVEHIAEHVGAKTLFSTHYHELTVLEDSMP-RLANVHVR 732
Query: 806 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
A+ DG+ V ++ DG +S A+ +P+ +I RAE L
Sbjct: 733 AVEQ---DGRVVFLHEVRDGKADQSYGIHVARLADLPDALIARAEVL 776
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN---PFGGLRPESIPKAGCPVV 103
+ K+ +P L R+GDFYE DA + L G IP G P
Sbjct: 12 QYFSIKADYPDAFLFYRLGDFYELFFEDAKQVAHELELTLTAKNGKNAEHPIPMCGVPHH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + ++V+ P + R + PG+
Sbjct: 72 AANGYIEQLIERGYKVALCDQVEDPKLTKGLVKREVVQVITPGT 115
>sp|P61673|MUTS_WOLPM DNA mismatch repair protein MutS OS=Wolbachia pipientis wMel
GN=mutS PE=3 SV=1
Length = 849
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + +
Sbjct: 651 IANSINLAGIHLITGPNMAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGA 710
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 711 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 770
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + +KN + +G+ + ++++GI ES AK
Sbjct: 771 KCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLA 830
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 831 GFPDSVLNRASEVF 844
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+++ +L R+GDFYE DA + L G + IP G P +
Sbjct: 32 QYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQEIPMCGVPAHS 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L G+ V I ++++ +A+ R
Sbjct: 92 SESYLHKLIDLGFKVAICDQLETADEAKKR 121
>sp|A5N8I5|MUTS_CLOK5 DNA mismatch repair protein MutS OS=Clostridium kluyveri (strain
ATCC 8527 / DSM 555 / NCIMB 10680) GN=mutS PE=3 SV=1
Length = 871
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 7/202 (3%)
Query: 658 GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G V N D+ + L L+TGPN GKS+ +R + +++ G VPA+SASI D
Sbjct: 595 GEFVSNDTDIDTGENQLLLITGPNMAGKSTYMRQVALVTIMAQIGSFVPAKSASISICDK 654
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA S+I
Sbjct: 655 IFTRIGASDDLASGKSTFMVEMWEVSNILKNATNKSLILLDEVGRGTSTYDGLSIAWSVI 714
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + + C + +TH H + L KIK + + ++ V K++ G +S
Sbjct: 715 EYICRESKLRCKTLFATHYHELTKLEGKIKGVKNYCVSVKEVENNIVFLRKIIRGGADQS 774
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +++RA ++
Sbjct: 775 YGIEVAKLAGLPEEVLKRAREI 796
Score = 40.8 bits (94), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K + +L R+GDFYE DA I +E GL+ E P G P
Sbjct: 9 QYMEIKENYKDCILFFRLGDFYEMFFDDAKIAAAELELVLTARECGLK-EKAPMCGIPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + + GY + I E+++ P Q++ R I PG+
Sbjct: 68 AAKSYIGRMVNKGYKIAICEQLEDPAQSKGIVKRGIIKVITPGT 111
>sp|B9E1Z0|MUTS_CLOK1 DNA mismatch repair protein MutS OS=Clostridium kluyveri (strain
NBRC 12016) GN=mutS PE=3 SV=1
Length = 871
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 7/202 (3%)
Query: 658 GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G V N D+ + L L+TGPN GKS+ +R + +++ G VPA+SASI D
Sbjct: 595 GEFVSNDTDIDTGENQLLLITGPNMAGKSTYMRQVALVTIMAQIGSFVPAKSASISICDK 654
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA S+I
Sbjct: 655 IFTRIGASDDLASGKSTFMVEMWEVSNILKNATNKSLILLDEVGRGTSTYDGLSIAWSVI 714
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + + C + +TH H + L KIK + + ++ V K++ G +S
Sbjct: 715 EYICRESKLRCKTLFATHYHELTKLEGKIKGVKNYCVSVKEVENNIVFLRKIIRGGADQS 774
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +++RA ++
Sbjct: 775 YGIEVAKLAGLPEEVLKRAREI 796
Score = 40.8 bits (94), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 103
+ ++ K + +L R+GDFYE DA I +E GL+ E P G P
Sbjct: 9 QYMEIKENYKDCILFFRLGDFYEMFFDDAKIAAAELELVLTARECGLK-EKAPMCGIPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ + + GY + I E+++ P Q++ R I PG+
Sbjct: 68 AAKSYIGRMVNKGYKIAICEQLEDPAQSKGIVKRGIIKVITPGT 111
>sp|Q46CE2|MUTS_METBF DNA mismatch repair protein MutS OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=mutS PE=3 SV=1
Length = 900
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 616 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLF 671
A V+E ++ P L D L +G P + G V N +M
Sbjct: 580 LAEVAENN--NYIRPQLTD----DCKILIRDGRHPVVENTVHGGFVPNDTEMDCKENQFL 633
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS+ +R +++ G VPA ASI D + + ++D A G+S+F
Sbjct: 634 LVTGPNMAGKSTYMRQTALIAIMAQVGSFVPASYASIGIIDQVFTRIGAFDDLASGQSTF 693
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI---VSTH 788
VEM E+ +I+ + RSLVL+DEI RGT T G IA +++E L N G +G+ +TH
Sbjct: 694 MVEMVELANILNNASPRSLVLLDEIGRGTSTYDGYSIAKAVVEFLHNRGKVGVRALFATH 753
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L K+K + + + V K+V G S + A+ GVPE +I+R
Sbjct: 754 YHQLTALEEKLKRVKNYHVAVKEEGHELVFLRKIVPGATDRSYGIQVARLAGVPEKVIER 813
Query: 849 AEDL 852
A ++
Sbjct: 814 ANEI 817
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRP-ESIPKAGCPVVNLRQT 108
K +P ++ R+GDFYE+ G DA + + L G + E +P AG P +
Sbjct: 16 KQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDKSGERMPLAGIPYHAIDTY 75
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L GY V I E+++ P +A+ R + PG+
Sbjct: 76 LPRLINKGYKVAICEQLEDPKKAKGIVKRGVVRVVTPGT 114
>sp|P74926|MUTS_THEMA DNA mismatch repair protein MutS OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=mutS PE=3
SV=2
Length = 793
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T++SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA ++
Sbjct: 752 IAGIPDRVINRAYEI 766
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA I+ + + R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
G P L L L GY V I ++++ P++++ R ++ PGS
Sbjct: 58 GIPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS 106
>sp|A8YTH9|MUTS_LACH4 DNA mismatch repair protein MutS OS=Lactobacillus helveticus
(strain DPC 4571) GN=mutS PE=3 SV=1
Length = 858
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N V M S +FL+TGPN GKS+ +R + +++ G VPA+SA++P FD I
Sbjct: 580 GSYIPNDVKMDSATNIFLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSAALPIFDQI 639
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + + T RSLVL DEI RGT T G +AG+I++
Sbjct: 640 FTRIGAADDLISGQSTFMVEMSEANAALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 699
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + SL + +G +G+ + K++ G +S
Sbjct: 700 YLHDKVGAKALFATHYHELTSLDETLDYLKNIHVGATEENGKLIFLHKILPGPADQSYGI 759
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P +++ A L
Sbjct: 760 HVAQLAGLPRAVLREATKL 778
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 7 EIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHMAVD 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 66 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 106
>sp|C0R5H4|MUTS_WOLWR DNA mismatch repair protein MutS OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=mutS PE=3 SV=1
Length = 854
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 661 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 720
+ N++++ + L+TGPN GKS+ LR ++L G VPAESA I D I + +
Sbjct: 656 IANSINLAGIHLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHIGVIDKIFSRVGA 715
Query: 721 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780
D+ G S+F VEM E +IV T RSLV++DEI RGT G IA ++IE + N+
Sbjct: 716 TDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVN 775
Query: 781 -CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 839
C I +TH H + + +KN + +G+ + ++++GI ES AK
Sbjct: 776 KCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLA 835
Query: 840 GVPETIIQRAEDLY 853
G P++++ RA +++
Sbjct: 836 GFPDSVLNRASEVF 849
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 104
+ L K+++ +L R+GDFYE DA + L G + IP G P +
Sbjct: 32 QYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQDIPMCGVPAHS 91
Query: 105 LRQTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L L G+ V I ++++ +A+ R
Sbjct: 92 SESYLHKLIDLGFKVAICDQLETADEAKKR 121
>sp|Q5FLX5|MUTS_LACAC DNA mismatch repair protein MutS OS=Lactobacillus acidophilus
(strain ATCC 700396 / NCK56 / N2 / NCFM) GN=mutS PE=3
SV=1
Length = 856
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N+V+M S ++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 580 GSYIPNSVEMDSSTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQI 639
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D G+S+F VEMSE + T RSLVL DEI RGT T G +AG+I++
Sbjct: 640 FTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDGMALAGAIVK 699
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G +TH H + L + + +G +G+ + K++ G +S
Sbjct: 700 YLHDKVGAKAFFATHYHELTDLDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 759
Query: 834 ETAKREGVPETIIQRAEDL 852
A+ G+P+++++ A L
Sbjct: 760 HVAQLAGLPKSVLREATKL 778
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 7 EIKKQYPDAFLFYRVGDFYELFEEDAVKGAQILELT-LTHRSNKTKNPIPMAGVPHMAVD 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V + E+++ P +A+ R I PG+
Sbjct: 66 TYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGT 106
>sp|B1LAW3|MUTS_THESQ DNA mismatch repair protein MutS OS=Thermotoga sp. (strain RQ2)
GN=mutS PE=3 SV=1
Length = 793
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T +SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA ++
Sbjct: 752 IAGIPDRVINRAYEI 766
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 44/241 (18%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA I+ + + R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDH 158
G P L L L GY V I ++++ P++++ R ++ PGS I
Sbjct: 58 GIPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS--------IVE 109
Query: 159 DLDFPEPMPVIGVSRSAKG-----YCIISILETMKTYSLEDGLTEDAL----VTKLRTSR 209
D E + V KG +C +S E + S ++ T D L ++++ S
Sbjct: 110 DEFLSETNNYMAVVSEEKGRYCTVFCDVSTGEVLVHESSDEQETLDLLKNYSISQIVCSE 169
Query: 210 YHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLE 269
+ L +SLR+ G ++ E I+ EW+ D L +V++ Y L+
Sbjct: 170 H----LKSSLRERFPG------------VYTESIS---EWYFSD-----LEEVEKAYNLK 205
Query: 270 N 270
+
Sbjct: 206 D 206
>sp|A5ILG0|MUTS_THEP1 DNA mismatch repair protein MutS OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=mutS PE=3 SV=1
Length = 793
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 661 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N + M + ++TGPN GKS+ +R + SL+ G VPA+ A +P FD I
Sbjct: 572 VENDIYMDNERRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTR 631
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M + D A G+S+F VEM+E+ I+ +T +SLVL+DE+ RGT T G IA +I E L
Sbjct: 632 MGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEVGRGTSTQDGVSIAWAISEELI 691
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
GC + +TH + L K + + + T K+VDG+ S E AK
Sbjct: 692 KRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAK 751
Query: 838 REGVPETIIQRAEDL 852
G+P+ +I RA ++
Sbjct: 752 IAGIPDRVINRAYEI 766
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 39 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 98
+K L + L+ K ++ +LL R+GDFYEA DA I+ + + R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNI---VLTRRQDAPMA 57
Query: 99 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDH 158
G P L L L GY V I ++++ P++++ R ++ PGS I
Sbjct: 58 GIPYHALNSYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS--------ILE 109
Query: 159 DLDFPEPMPVIGVSRSAKG-YCII 181
D E + V KG YC I
Sbjct: 110 DEFLSETNNYMAVVSEEKGQYCTI 133
>sp|A3PFD3|MUTS_PROM0 DNA mismatch repair protein MutS OS=Prochlorococcus marinus (strain
MIT 9301) GN=mutS PE=3 SV=1
Length = 913
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q L +LTGPN GKS +R + +L G VPA +A I D I + + D +
Sbjct: 711 DNQKLIILTGPNASGKSCFIRQLGLIQILAQIGSFVPANNAEIKIADRIFTRIGAVDDQS 770
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEMSE SI+ TS SLVL+DEI RGT T G IA S+ E L I C I
Sbjct: 771 SGQSTFMVEMSETASILNQATSNSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIQCNTI 830
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L KN + E D Q + + ++V G +S E AK GVP+
Sbjct: 831 FATHYHELNYLKNSNKNIQNFQVLVEQNDDQLIFSHRIVRGGSNKSYGIEAAKLAGVPKE 890
Query: 845 IIQRAEDL 852
+I++A+ +
Sbjct: 891 VIEKAKSV 898
Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 11 RKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQ-------------FKSKFPR 57
RK ST +L+N+ K L N KN + E + +++ + K +
Sbjct: 47 RKNST-NLINKFKTD----LISNKKNVCINEESYSYKTVSKLKLTPVMKHYVTLKEENKD 101
Query: 58 EVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTR 114
+LL R+GDF+E DA + L+E + G IP AG P + + DL +
Sbjct: 102 RLLLYRLGDFFECFFEDAVLISNLLEITLTSKDAGKEIGKIPMAGVPHHAMDRYCADLIK 161
Query: 115 NGYSVCIVEEVQGPT 129
YSV I ++++ +
Sbjct: 162 KNYSVVICDQLEKSS 176
>sp|Q2GG13|MUTS_EHRCR DNA mismatch repair protein MutS OS=Ehrlichia chaffeensis (strain
Arkansas) GN=mutS PE=3 SV=1
Length = 804
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Query: 657 EGSAVHNTVD---MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G V N +D MQ + L+TGPN GKS+ LR +L G VPA+ A I D
Sbjct: 593 NGKFVANDIDLSLMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAQHAHIGVIDK 652
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
+ + + D+ A G S+F VEM+E +I+ T +S V++DEI RGT T G IA S+I
Sbjct: 653 VFSRVGASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVI 712
Query: 774 ETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + N+ I +TH H + L ++N M E +G+ V +++ G +S
Sbjct: 713 EQIHNVNKSRAIFATHYHELSKLDRYLENIKCFCMKVEEWNGKVVFLHEIIPGSTNKSYG 772
Query: 833 FETAKREGVPETIIQRAEDL 852
AK G P++++ RAEDL
Sbjct: 773 IHVAKLAGFPQSVLDRAEDL 792
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + KS++ +L R+GDFYE DA +E + + + ++P G P +
Sbjct: 13 QYMMLKSQYKEYLLFYRLGDFYELFFDDA---IETSRILNIVLTKKGNVPMCGVPFHSSE 69
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L+ L + GY + I E+++ +A+ R
Sbjct: 70 SYLNRLVKLGYKIAICEQLETSEEAKKR 97
>sp|A4W4J7|MUTS_STRS2 DNA mismatch repair protein MutS OS=Streptococcus suis (strain
98HAH33) GN=mutS PE=3 SV=1
Length = 847
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 659 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+++H D + L+TGPN GKS+ +R + ++ G VPA+ A +P FDAI +
Sbjct: 588 NSIHLNTDTH-MQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRI 646
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-D 777
+ D G+S+F VEM E V T RSL+L DE+ RGT T G +A SIIE + D
Sbjct: 647 GAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHD 706
Query: 778 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 837
IG + +TH H + L +++ + T DGQ K+ G +S AK
Sbjct: 707 KIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAK 766
Query: 838 REGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSII 874
G+PE ++QRA+ I + A P PS++
Sbjct: 767 IAGMPEELLQRAD--RILQTLENQAPTAPTHPAPSVV 801
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K+++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 13 QYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELS-LTSRNKNAENPIPMAGVPYH 71
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+Q +D L G+ V I E+++ P QA R + PG+
Sbjct: 72 AAQQYIDTLVELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGT 115
>sp|B2V1M2|MUTS_CLOBA DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Alaska E43 / Type E3) GN=mutS PE=3 SV=1
Length = 941
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 107/202 (52%), Gaps = 4/202 (1%)
Query: 654 DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
D + N D + L L+TGPN GKS+ +R + +L+ G VPA SA+I D
Sbjct: 593 DFVSNNTALNQTD-KELLLITGPNMAGKSTYMRQVALITLMAQMGSFVPATSANISICDK 651
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ TS SLVL+DE+ RGT T G IA S+I
Sbjct: 652 IFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGTSTYDGLSIAWSVI 711
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + N+ C + +TH H + L + ++ + L V K+V+G ES
Sbjct: 712 EYITKNKNLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVVFLRKIVEGGADES 771
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +I RA ++
Sbjct: 772 YGIEVAKLAGLPENVINRAREI 793
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
E ++ K ++ +L R+GDFYE DA + L G GL E P G P
Sbjct: 9 EYMKTKEEYNDCILFYRLGDFYEMFFDDALTVSRELELVLTGKNCGLE-ERAPMCGIPHH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+++ P Q++ R + PG+
Sbjct: 68 AAAAYIPRLVTKGYKVAICEQLEDPKQSKGIVKRGVVKVITPGT 111
>sp|A8F753|MUTS_THELT DNA mismatch repair protein MutS OS=Thermotoga lettingae (strain
ATCC BAA-301 / DSM 14385 / TMO) GN=mutS PE=3 SV=1
Length = 811
Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 9/316 (2%)
Query: 541 QIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN 600
+ ++ P K V E F T +++E ++ A + + E+ + + L +K+
Sbjct: 463 HLSKIPPNYVRKQTLVNAERFITDELKEFEQKMLTAKENLERREKEIYDEICASLSSKVG 522
Query: 601 ILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA 660
+++ + L L R + P+ + DG L+ N P + +
Sbjct: 523 LIIELAEFLAQIDVLSTLAYVAIRYGYTKPSFSN---DGKLLLR-NSRHPV-VERLVDTF 577
Query: 661 VHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 717
V N ++M ++ +LTGPN GKS+ +R + S++ G VPA+ A +P FD I
Sbjct: 578 VPNDLEMDRTKNFIILTGPNMSGKSTFIRQVALVSIMAQMGSFVPADEAILPVFDRIFAK 637
Query: 718 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777
M D A GKS+F +EM+E+ IV T SL+L+DE+ RGT T G IA ++ E L
Sbjct: 638 MGIRDDIASGKSTFLIEMNEVAKIVYQATENSLILLDEVGRGTSTFDGISIAWAVSEYLQ 697
Query: 778 N-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836
N I C I +TH + L K + Q + ++VDGI S E A
Sbjct: 698 NQISCKCIFATHFTELTELAKMYDGIVNKTVQVIEEKNQVIFLHRVVDGIADRSYGIEVA 757
Query: 837 KREGVPETIIQRAEDL 852
G+P IIQRA ++
Sbjct: 758 GIAGLPGEIIQRAREV 773
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + KSK+ +LL R+GDFYEA DA I+ + L + P AG P L
Sbjct: 9 QYMDIKSKYKDAILLFRLGDFYEAFFEDAEIVSKTLDLVL---THRQDAPMAGVPYHALN 65
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L + GY V I ++V+ P+ A+ R ++ PG+
Sbjct: 66 TYLKKLVQFGYKVAICDQVEDPSTAKGLVKREVTRIVTPGT 106
>sp|A2RP10|MUTS_LACLM DNA mismatch repair protein MutS OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=mutS PE=3 SV=1
Length = 840
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 150/298 (50%), Gaps = 10/298 (3%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618
E F + ++ E E EA K+ + +L GL +E + I L + + L +
Sbjct: 484 ERFGSQELTEIEEIMLEAREKSSSLEYDLFMGLRAETEQYIGRLQALAKTIAEIDCLQSL 543
Query: 619 VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDM---QSLFLL 673
++ ++ P L + G+ +++ G +A G+ V N +++ + L+
Sbjct: 544 SVVAEKQGYIRPTLTE----GSRIVEIKGGRHAVVEAVMGAQEYVPNDIELPEQTDIQLI 599
Query: 674 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733
TGPN GKS+ +R ++ G VPAE+A++P FDAI + + D+ G+S+F V
Sbjct: 600 TGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLPIFDAIFTRIGASDNLISGESTFMV 659
Query: 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI 792
EMSE + TSRSL++ DE+ RGT T G +A +IIE + ++IG + +TH H +
Sbjct: 660 EMSEANHAIQKATSRSLIIFDELGRGTATYDGMALAQAIIEYVHEHIGAKTLFATHYHEL 719
Query: 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 850
L ++ + + T +G K+ DG +S AK G+P+T+++RA+
Sbjct: 720 TDLDKELDHLDNVHVATLEQNGNVTFLHKITDGPADKSYGIHVAKIAGLPQTLLERAD 777
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ L K +P LL R+GDFYE ++A ++E L IP AG P
Sbjct: 11 QYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILELT-LTSRNKNSENPIPMAGVPHH 69
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +D L GY V + E+++ P +A R ++ PG+
Sbjct: 70 AATEYIDKLVDLGYKVAVAEQMEDPKKAVGIVKRAVTQVITPGT 113
>sp|A6LWJ5|MUTS_CLOB8 DNA mismatch repair protein MutS OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=mutS PE=3 SV=1
Length = 928
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 6/199 (3%)
Query: 662 HNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 718
+NT QS L L+TGPN GKS+ +R + +L+ G VPA SA+I D I +
Sbjct: 597 NNTTLNQSDKELLLITGPNMAGKSTYMRQVALITLMAQIGSFVPASSANISICDKIFTRI 656
Query: 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-- 776
+ D A GKS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE +
Sbjct: 657 GASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYITG 716
Query: 777 -DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFET 835
+N+ C + +TH H + L + ++ + + + K+V+G ES E
Sbjct: 717 NENLRCKTLFATHYHELVKLEGVLPGVKNYSVAVKKMKDSVIFLRKIVEGGADESYGIEV 776
Query: 836 AKREGVPETIIQRAEDLYI 854
AK G+P+ +I RA+++ +
Sbjct: 777 AKLAGLPDDVINRAKEILL 795
Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
E ++ K ++ +L R+GDFYE DA + L G GL E P G P
Sbjct: 9 EYMKTKEEYSDCILFYRLGDFYEMFFDDAITVSRELELVLTGKNCGLE-ERAPMCGIPHH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+++ P +A+ R + PG+
Sbjct: 68 AAAAYIPRLVNKGYKVAICEQLEDPKEAKGIVKRGVVKIITPGT 111
>sp|Q895H2|MUTS_CLOTE DNA mismatch repair protein MutS OS=Clostridium tetani (strain
Massachusetts / E88) GN=mutS PE=3 SV=1
Length = 881
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 7/202 (3%)
Query: 658 GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
GS V N M + + L+TGPN GKS+ +R + +++ G VPA+ ASI D
Sbjct: 591 GSFVANDTTMDTEDNQMLLITGPNMAGKSTYMRQVALITIMAQIGSFVPAKEASISLCDK 650
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D + GKS+F VEM E+ +I+ TS+SL+++DE+ RGT T G IA ++I
Sbjct: 651 IFTRIGASDDLSAGKSTFMVEMWEVSNILKNATSKSLIILDEVGRGTSTFDGLSIAWAVI 710
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + N+ + +TH H + L KIK ++ + +D V K+++G +S
Sbjct: 711 EYICNNKNLRSKTLFATHYHELIQLENKIKGVKNYSVSVKEMDKDIVFLRKIIEGGADQS 770
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +I RA+++
Sbjct: 771 YGIEVAKLAGLPEDVIIRAKEI 792
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ L+ K K +L R+GDFYE DA + L G GL + P G P
Sbjct: 9 QYLEVKEKCKDCILFFRLGDFYEMFFEDAETASKELELVLTGRDCGLSKRA-PMCGIPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ ++ L GY + I E+++ P+ A+ R I PG+
Sbjct: 68 SASNYINRLVSKGYKIAICEQLEDPSAAKGIVKRDIVKIVTPGT 111
>sp|Q5UYI1|MUTS2_HALMA DNA mismatch repair protein MutS 2 OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=mutS2 PE=3 SV=2
Length = 947
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 729
L ++TGPN GKS+ +R + LL G VPA++A +P D + + + D A G+S
Sbjct: 654 LAVVTGPNMSGKSTYMRQVALICLLAQSGSFVPAKAADLPILDRVFTRVGASDDIAGGRS 713
Query: 730 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 788
+F +EM+E+ +I+ A T SLVL+DE+ RGT TA G IA ++ E L D +G + +TH
Sbjct: 714 TFMIEMTELATILDAATENSLVLLDEVGRGTSTADGLAIARAVTEYLHDEVGAYTLFATH 773
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + ++ + A + T DG +L G S E A GVP+++++R
Sbjct: 774 HHDLTAVAAALSGATNRHFETSREDGDVRFDHELAPGPAAASYGVEVASMAGVPDSVVER 833
Query: 849 AEDL 852
+ DL
Sbjct: 834 SRDL 837
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 54 KFPREVLLCRVGDFYEAIGIDA------CILVEYAGLNPFGGLRPESIPKAGCPVVNLRQ 107
++ ++L +VGDFYEA A C + + G P AG P+ N
Sbjct: 31 QYDDALVLFQVGDFYEAFCAAAKRVARLCEITLTQREDSTG-----EYPMAGIPIDNAES 85
Query: 108 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
++ L GY V I ++V+ P + R ++ PG+
Sbjct: 86 YVETLLDAGYRVAIADQVEDPDEVSGVVERAVTRIVTPGT 125
>sp|A0Q0M6|MUTS_CLONN DNA mismatch repair protein MutS OS=Clostridium novyi (strain NT)
GN=mutS PE=3 SV=1
Length = 909
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 105/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +L+ G VPA+ A I D I + + D A G
Sbjct: 607 HQLLLITGPNMAGKSTYMRQVALITLMAQIGSFVPAKEAEIVICDKIFTRIGASDDLARG 666
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ T++SL+L+DE+ RGT T G IA ++IE + +N+ +
Sbjct: 667 KSTFMVEMWEVANILNNATNKSLILLDEVGRGTSTYDGLSIAWAVIEYICKDNNLKSKTL 726
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + SL KIK ++ + +D + K+++G ES E AK G+P
Sbjct: 727 FATHYHELTSLEGKIKGVKNYSIAVKKVDDDIIFLRKIIEGGADESYGIEVAKLAGIPSV 786
Query: 845 IIQRAEDL 852
+ RA+++
Sbjct: 787 VTNRAKEI 794
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
+ L+ K + +L R+GDFYE DA L G GL + P G P
Sbjct: 9 QYLEVKERNKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLENRA-PMCGIPYH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+++ P++A+ R + PG+
Sbjct: 68 AANTYISRLITKGYKVAICEQLEDPSKAKGIVKRDVIKIYTPGT 111
>sp|C1CTY2|MUTS_STRZT DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain Taiwan19F-14) GN=mutS PE=3 SV=1
Length = 844
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|Q3YSJ8|MUTS_EHRCJ DNA mismatch repair protein MutS OS=Ehrlichia canis (strain Jake)
GN=mutS PE=3 SV=1
Length = 804
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Query: 657 EGSAVHNTVD---MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
G V N +D MQ + L+TGPN GKS+ LR +L G VPA SA I D
Sbjct: 593 NGKFVANDIDLAQMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAYSAHIGVIDK 652
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D+ A G S+F VEM+E +I+ T +S V++DEI RGT T G IA S+I
Sbjct: 653 IFSRVGASDNIAFGYSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVI 712
Query: 774 ETLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 832
E + N+ I +TH H + L ++N M E +G+ V +++ G +S
Sbjct: 713 EQIHNVNKSRAIFATHYHELSKLDECLENIKCFCMKVEEWNGKVVFLHEIIPGSTNKSYG 772
Query: 833 FETAKREGVPETIIQRAEDL 852
AK G P++++ RAEDL
Sbjct: 773 IHVAKLAGFPQSVLDRAEDL 792
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
+ + K+++ +L R+GDFYE DA +E + + + ++P G P +
Sbjct: 13 QYMMLKNQYKECLLFYRLGDFYELFFDDA---IETSKVLNIVLTKKGNVPMCGVPFHSSE 69
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSR 134
L+ L + GY V I E+++ P +A+ R
Sbjct: 70 SYLNRLVKLGYKVAICEQLETPEEAKKR 97
>sp|B1I9E5|MUTS_STRPI DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain Hungary19A-6) GN=mutS PE=3 SV=1
Length = 844
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|C1CN23|MUTS_STRZP DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain P1031) GN=mutS PE=3 SV=1
Length = 844
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|C1CH06|MUTS_STRZJ DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain JJA) GN=mutS PE=3 SV=1
Length = 844
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|B8ZPK0|MUTS_STRPJ DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain ATCC 700669 / Spain 23F-1) GN=mutS PE=3 SV=1
Length = 844
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|C1CAQ5|MUTS_STRP7 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain 70585) GN=mutS PE=3 SV=1
Length = 844
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|Q04I96|MUTS_STRP2 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
serotype 2 (strain D39 / NCTC 7466) GN=mutS PE=3 SV=1
Length = 844
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|P0A3R4|HEXA_STRR6 DNA mismatch repair protein HexA OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=hexA PE=3 SV=1
Length = 844
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|P0A3R3|HEXA_STRPN DNA mismatch repair protein HexA OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=hexA PE=3
SV=1
Length = 844
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LTQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|B1KSA3|MUTS_CLOBM DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=mutS PE=3 SV=1
Length = 932
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 727
L L+TGPN GKS+ +R + +++ G VPA+ A+I D I + + D A G
Sbjct: 608 NQLILITGPNMAGKSTYMRQVALITIMAQIGSFVPAKEANISICDKIFTRIGASDDLAAG 667
Query: 728 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGI 784
KS+F VEM E+ +I+ TS+SLVL+DE+ RGT T G IA S+IE + N+ C +
Sbjct: 668 KSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTL 727
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L IK ++ L+ + V K++ G +S E AK G+P
Sbjct: 728 FATHYHELTKLEDNIKGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSP 787
Query: 845 IIQRAEDL 852
+I RA+++
Sbjct: 788 VINRAKEI 795
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 59 VLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVVNLRQTLDDLTRN 115
+L R+GDFYE DA + + L G GL E P G P + L
Sbjct: 21 ILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLE-ERAPMCGIPYHAANTYIGRLVSA 79
Query: 116 GYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
GY + I E+++ P+ ++ R I PG+
Sbjct: 80 GYKIAICEQLEDPSASKGIVKRGIIKIITPGT 111
>sp|B2TIC3|MUTS_CLOBB DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Eklund 17B / Type B) GN=mutS PE=3 SV=1
Length = 942
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 4/202 (1%)
Query: 654 DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713
D + N D + L L+TGPN GKS+ +R + +L+ G VPA SA+I D
Sbjct: 593 DFVSNNTALNQTD-KELLLITGPNMAGKSTYMRQVALITLMAQMGSFVPATSANISICDK 651
Query: 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 773
I + + D A GKS+F VEM E+ +I+ TS SLVL+DE+ RGT T G IA S+I
Sbjct: 652 IFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGTSTYDGLSIAWSVI 711
Query: 774 ETL---DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 830
E + ++ C + +TH H + L + ++ + L V K+V+G ES
Sbjct: 712 EYITKNKDLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVVFLRKIVEGGADES 771
Query: 831 LAFETAKREGVPETIIQRAEDL 852
E AK G+PE +I RA ++
Sbjct: 772 YGIEVAKLAGLPENVINRAREI 793
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG---GLRPESIPKAGCPVV 103
E ++ K ++ +L R+GDFYE DA + L G GL E P G P
Sbjct: 9 EYMKTKEEYNDCILFYRLGDFYEMFFDDALTVSRELELVLTGKNCGLE-ERAPMCGIPHH 67
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L GY V I E+++ P Q++ R + PG+
Sbjct: 68 AAAAYIPRLVTKGYKVAICEQLEDPKQSKGIVKRGVVKVITPGT 111
>sp|P61671|MUTS_THET2 DNA mismatch repair protein MutS OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=mutS PE=3 SV=1
Length = 811
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I +
Sbjct: 568 VPNDLEMAHELVLVTGPNMAGKSTFLRQTALIALLAQIGSFVPAEEAELPLFDGIYTRIG 627
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A GKS+F VEM E+ ++ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 628 ASDDLAGGKSTFMVEMEEVALVLKEATERSLVLLDEVGRGTSSLDGVAIATALAEALHER 687
Query: 780 GCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
C + +TH + +L L ++KN A E G V +++ G +S E A+
Sbjct: 688 RCYTLFATHYFELTALALPRLKNLHVAAKEEE---GGLVFYHQVLPGPASKSYGVEVAEM 744
Query: 839 EGVPETIIQRAEDLYIACGVN 859
G+P+ +++RA L A
Sbjct: 745 AGLPKEVVERARALLSAMAAR 765
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 16 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPI 75
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + + ++V+ +A R ++ PG+
Sbjct: 76 RAFDAYAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 120
>sp|B5E385|MUTS_STRP4 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
serotype 19F (strain G54) GN=mutS PE=3 SV=1
Length = 844
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 663 NTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
NT+ M S+ L+TGPN GKS+ +R + +++ G VPAESA +P FDAI +
Sbjct: 587 NTIQMAEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIG 646
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 778
+ D G+S+F VEM E + ++ T SL+L DE+ RGT T G +A SIIE + ++
Sbjct: 647 AADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEH 706
Query: 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
IG + +TH H + SL +++ + T DGQ K+ G +S AK
Sbjct: 707 IGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSXGIHVAKI 766
Query: 839 EGVPETIIQRAEDLYIACGVNCVMIAAREQPPP 871
G+P ++ RA+ + + + E PPP
Sbjct: 767 AGLPADLLARADKI-----LXQLENQGTESPPP 794
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 103
+ + K ++P LL R+GDFYE ++A ++E + L IP AG P
Sbjct: 12 QYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEIS-LTSRNKNADNPIPMAGVPYH 70
Query: 104 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ +Q +D L GY V I E+++ P QA R + PG+
Sbjct: 71 SAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGT 114
>sp|Q56239|MUTS_THET8 DNA mismatch repair protein MutS OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=mutS PE=1 SV=3
Length = 819
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 719
V N ++M L L+TGPN GKS+ LR +LL G VPAE A +P FD I +
Sbjct: 576 VPNDLEMAHELVLVTGPNMAGKSTFLRQTALIALLAQIGSFVPAEEAELPLFDGIYTRIG 635
Query: 720 SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779
+ D A GKS+F VEM E+ ++ T RSLVL+DE+ RGT + G IA ++ E L
Sbjct: 636 ASDDLAGGKSTFMVEMEEVALVLKEATERSLVLLDEVGRGTSSLDGVAIATALAEALHER 695
Query: 780 GCLGIVSTHLHGIFSLPL-KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 838
C + +TH + +L L ++KN A E G V +++ G +S E A+
Sbjct: 696 RCYTLFATHYFELTALALPRLKNLHVAAKEEE---GGLVFYHQVLPGPASKSYGVEVAEM 752
Query: 839 EGVPETIIQRAEDLYIACGVN 859
G+P+ +++RA L A
Sbjct: 753 AGLPKEVVERARALLSAMAAR 773
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 44 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPE-SIPKAGCPV 102
L + ++ + ++P +LL +VGDFYE G DA L GL + + P AG P+
Sbjct: 24 LLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPI 83
Query: 103 VNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
+ L + G+ + + ++V+ +A R ++ PG+
Sbjct: 84 RAFDAYAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 128
>sp|Q8PWA7|MUTS_METMA DNA mismatch repair protein MutS OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=mutS PE=3 SV=1
Length = 900
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 7/214 (3%)
Query: 646 NGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV 701
+G P G V N +M L+TGPN GKS+ +R +++ G V
Sbjct: 604 DGRHPVVESTVSGGFVPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQAGSFV 663
Query: 702 PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTE 761
PA ASI D + + ++D A G+S+F VEM E+ +I+ + +SLVL+DEI RGT
Sbjct: 664 PASYASIGVIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTS 723
Query: 762 TAKGTCIAGSIIETLDNIGCLGI---VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP 818
T G IA +++E L N G +GI +TH H + SL K+K + + + V
Sbjct: 724 TYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQLTSLEEKLKRVKNYHIAVKEEGHELVF 783
Query: 819 TWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852
K+V G S A+ GVPE +I+RA ++
Sbjct: 784 LRKIVPGATDRSYGIHVARLAGVPEKVIERANEI 817
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 52 KSKFPREVLLCRVGDFYEAIGIDACILVEY--AGLNPFGGLRP-ESIPKAGCPVVNLRQT 108
K +P ++ R+GDFYE+ G DA + + L G R E +P AG P +
Sbjct: 16 KQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRSGERMPLAGIPYHAIDTY 75
Query: 109 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 147
L L GY V I E+++ P QA+ R + PG+
Sbjct: 76 LPRLINKGYKVAICEQLEDPKQAKGVVKRGVVRVVTPGT 114
>sp|A2BTM6|MUTS_PROMS DNA mismatch repair protein MutS OS=Prochlorococcus marinus (strain
AS9601) GN=mutS PE=3 SV=1
Length = 913
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 725
D Q L +LTGPN GKS +R + +L G VPA +A I D I + + D +
Sbjct: 711 DNQKLIILTGPNASGKSCFIRQLGLIQILTQIGSFVPANNAEIKIADRIFTRIGAVDDQS 770
Query: 726 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 784
G+S+F VEMSE SI+ TS SLVL+DEI RGT T G IA S+ E L I C I
Sbjct: 771 SGQSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIQCNTI 830
Query: 785 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 844
+TH H + L KN + E + Q + + ++V G +S E AK GVP+
Sbjct: 831 FATHYHELNYLKNTNKNIQNFQVLVEQNNDQLIFSHRIVKGGSNKSYGIEAAKLAGVPKE 890
Query: 845 IIQRAEDL 852
+I++A+ +
Sbjct: 891 VIEKAKSV 898
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 11 RKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQ-------------FKSKFPR 57
RK ST +L+N+ K ++L+ N KN + E + +++ + K +
Sbjct: 47 RKNST-NLINKFK-TDLIS---NNKNVCINEESYSYKTVSKLKLTPVMKHYVTLKEENKD 101
Query: 58 EVLLCRVGDFYEAIGIDACI---LVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTR 114
+LL R+GDF+E DA + L+E + G IP AG P + + DL +
Sbjct: 102 RLLLYRLGDFFECFFEDAVLISNLLEITLTSKDAGKEIGKIPMAGVPHHAMERYCADLIK 161
Query: 115 NGYSVCIVEEVQGPT 129
YSV I ++++ +
Sbjct: 162 KNYSVVICDQLEKSS 176
>sp|Q048Y4|MUTS_LACDB DNA mismatch repair protein MutS OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC BAA-365) GN=mutS PE=3
SV=1
Length = 856
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 658 GSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 714
GS + N + M S++L+TGPN GKS+ +R + +++ G VPA+SA +P FD I
Sbjct: 587 GSYIPNDLVMDEDTSIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQI 646
Query: 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 774
+ + D GKS+F VEMSE + +SRSLVL DEI RGT T G +AG+II+
Sbjct: 647 FTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAIIK 706
Query: 775 TL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 833
L D +G + +TH H + L + + +G +G+ + K++ G +S
Sbjct: 707 YLHDKVGAKTLFATHYHELTELDETLLHLKNIHVGATEENGKLIFLHKILPGPADQSYGI 766
Query: 834 ETAKREGVPETIIQRAEDL 852
AK G+P +++ A +
Sbjct: 767 HVAKLAGLPRAVLREASSM 785
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 50 QFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVVNLR 106
Q K ++P L RVGDFYE DA ++E L IP AG P + +
Sbjct: 15 QIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELT-LTHRSNKSENPIPMAGVPHMAVD 73
Query: 107 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFG 152
++ L GY V I E+++ P +A+ R I PG+ G
Sbjct: 74 SYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQG 119
>sp|Q1MRT4|MUTS_LAWIP DNA mismatch repair protein MutS OS=Lawsonia intracellularis
(strain PHE/MN1-00) GN=mutS PE=3 SV=1
Length = 893
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 148/302 (49%), Gaps = 17/302 (5%)
Query: 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQT-KINILVFASMLLVIGKALFA 617
E ++T ++++ ER A K +L + L EL + + IL AS++ + L+
Sbjct: 522 ERYTTEELKDLEERLLSATEKRNTLEYKLFQKLREELVSIRPRILFMASLIAQLD--LWQ 579
Query: 618 HVSE-GRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM-----QSLF 671
+++ R W P L L N G P ++ G +V D+ + +
Sbjct: 580 SLADVAIRHNWNKPTL----LTNNNIFIREGRHPV-IESIIGKSVFVPNDLVMDETRRML 634
Query: 672 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 731
L+TGPN GKS++LR LL G VPA A I D I + + D+ A G+S+F
Sbjct: 635 LITGPNMAGKSTVLRQTAIICLLAHMGSFVPATEAQIGICDRIFSRVGASDNLARGQSTF 694
Query: 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGIVSTH 788
VEM E I+ TSRSLV++DEI RGT T G +A ++ E L D+ G + +TH
Sbjct: 695 MVEMMETARILRQATSRSLVILDEIGRGTSTFDGLALAWAVAEDLVCKDHDGVRTLFATH 754
Query: 789 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 848
H + +L K+ + + + + V ++L+ G S E A+ GVP+++IQR
Sbjct: 755 YHELTALEEKLTGVHTMTIAIRHWNDELVFLYRLIPGPADRSYGIEVARLAGVPQSVIQR 814
Query: 849 AE 850
A+
Sbjct: 815 AK 816
Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 47 EMLQFKSKFPREVLLCRVGDFYEAIGIDA-----CILVEYAGLNPFGGLRPES-IPKAGC 100
+ L KS +P +L R+GDFYE DA + + NP R E+ +P G
Sbjct: 14 QYLSIKSNYPDTLLFYRMGDFYELFFEDAETAARELQIALTARNP----RAENPVPMCGV 69
Query: 101 PVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFIS 140
P + L + GY V + E+ + +++ R ++
Sbjct: 70 PWHAADSYIHQLIQKGYKVALCEQTEDFRESKGLVQRKVT 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,896,178
Number of Sequences: 539616
Number of extensions: 15719202
Number of successful extensions: 44041
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 41416
Number of HSP's gapped (non-prelim): 1587
length of query: 968
length of database: 191,569,459
effective HSP length: 127
effective length of query: 841
effective length of database: 123,038,227
effective search space: 103475148907
effective search space used: 103475148907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)