Query 002090
Match_columns 968
No_of_seqs 583 out of 3474
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 16:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0249 MutS Mismatch repair A 100.0 1E-116 3E-121 1068.0 52.2 738 42-859 4-799 (843)
2 TIGR01070 mutS1 DNA mismatch r 100.0 3E-114 8E-119 1060.0 52.7 726 44-859 1-784 (840)
3 PRK05399 DNA mismatch repair p 100.0 5E-110 1E-114 1029.3 54.1 737 41-858 5-798 (854)
4 KOG0217 Mismatch repair ATPase 100.0 3.6E-78 7.7E-83 703.4 30.3 774 25-860 229-1093(1125)
5 KOG0218 Mismatch repair MSH3 [ 100.0 5.5E-77 1.2E-81 666.4 30.0 763 43-860 161-1031(1070)
6 KOG0219 Mismatch repair ATPase 100.0 4.1E-55 9E-60 501.3 25.5 746 56-862 30-840 (902)
7 PRK00409 recombination and DNA 100.0 2.9E-50 6.3E-55 492.7 37.5 478 309-856 16-514 (782)
8 TIGR01069 mutS2 MutS2 family p 100.0 1.9E-47 4.2E-52 466.5 37.7 474 311-856 18-509 (771)
9 KOG0220 Mismatch repair ATPase 100.0 7.1E-45 1.5E-49 410.9 19.7 525 315-881 257-833 (867)
10 KOG0221 Mismatch repair ATPase 100.0 5.6E-41 1.2E-45 372.6 25.5 509 306-858 226-795 (849)
11 PF00488 MutS_V: MutS domain V 100.0 6.5E-41 1.4E-45 357.4 18.1 227 627-858 1-234 (235)
12 cd03286 ABC_MSH6_euk MutS6 hom 100.0 6.8E-38 1.5E-42 329.6 17.6 193 657-849 15-218 (218)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 4.1E-36 8.9E-41 318.5 20.5 200 657-856 15-221 (222)
14 cd03287 ABC_MSH3_euk MutS3 hom 100.0 2.1E-36 4.6E-41 319.1 18.3 193 657-849 16-222 (222)
15 cd03284 ABC_MutS1 MutS1 homolo 100.0 1.6E-35 3.4E-40 312.9 19.7 210 637-853 3-216 (216)
16 smart00534 MUTSac ATPase domai 100.0 1.3E-34 2.9E-39 299.2 15.9 184 670-853 1-185 (185)
17 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.7E-33 3.7E-38 294.2 18.4 184 657-840 14-203 (204)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 8.9E-33 1.9E-37 291.3 18.3 184 658-841 15-213 (213)
19 cd03283 ABC_MutS-like MutS-lik 100.0 6.8E-32 1.5E-36 281.6 18.4 184 657-841 12-199 (199)
20 COG1193 Mismatch repair ATPase 100.0 8.7E-32 1.9E-36 322.9 21.3 315 522-855 182-501 (753)
21 cd03243 ABC_MutS_homologs The 100.0 2.4E-31 5.3E-36 279.0 17.9 185 657-841 16-202 (202)
22 cd03280 ABC_MutS2 MutS2 homolo 100.0 9.6E-31 2.1E-35 274.0 16.8 183 657-841 14-200 (200)
23 KOG0217 Mismatch repair ATPase 100.0 1.7E-32 3.7E-37 321.7 -2.4 920 23-956 19-1105(1125)
24 PF01624 MutS_I: MutS domain I 100.0 9.9E-30 2.1E-34 241.1 7.1 106 46-151 5-112 (113)
25 COG1126 GlnQ ABC-type polar am 99.9 3.8E-23 8.3E-28 209.3 12.4 150 657-809 13-213 (240)
26 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.1E-22 2.3E-27 215.2 12.4 144 649-794 8-203 (254)
27 COG1120 FepC ABC-type cobalami 99.9 8.3E-22 1.8E-26 209.5 13.6 146 651-798 8-208 (258)
28 COG1116 TauB ABC-type nitrate/ 99.9 1.5E-21 3.3E-26 203.6 12.7 141 658-798 15-200 (248)
29 COG1136 SalX ABC-type antimicr 99.8 1.1E-20 2.3E-25 197.2 13.7 147 659-805 18-218 (226)
30 COG4152 ABC-type uncharacteriz 99.8 6.8E-21 1.5E-25 195.2 11.8 140 657-797 13-198 (300)
31 COG1131 CcmA ABC-type multidru 99.8 1.6E-20 3.4E-25 207.5 15.3 151 658-809 17-217 (293)
32 COG2884 FtsE Predicted ATPase 99.8 3.2E-20 6.9E-25 184.0 13.3 145 651-796 7-203 (223)
33 COG3638 ABC-type phosphate/pho 99.8 2.7E-20 5.9E-25 190.9 11.2 155 653-808 11-227 (258)
34 COG1127 Ttg2A ABC-type transpo 99.8 3E-20 6.4E-25 191.2 10.8 150 657-808 19-225 (263)
35 PRK13537 nodulation ABC transp 99.8 8.3E-20 1.8E-24 203.6 13.7 150 658-808 19-217 (306)
36 COG4555 NatA ABC-type Na+ tran 99.8 2.4E-20 5.1E-25 186.3 8.1 148 654-802 10-206 (245)
37 COG1125 OpuBA ABC-type proline 99.8 7.1E-20 1.5E-24 189.0 11.6 142 658-799 13-206 (309)
38 PRK13536 nodulation factor exp 99.8 1.2E-19 2.6E-24 204.5 14.2 156 650-807 46-250 (340)
39 TIGR01188 drrA daunorubicin re 99.8 1.8E-19 3.8E-24 200.9 14.0 147 658-805 5-200 (302)
40 cd03226 ABC_cobalt_CbiO_domain 99.8 2.4E-19 5.2E-24 188.6 14.2 139 659-798 13-195 (205)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 2E-19 4.4E-24 191.0 13.8 138 659-797 17-208 (218)
42 TIGR00960 3a0501s02 Type II (G 99.8 2.3E-19 4.9E-24 190.4 13.8 138 659-797 16-206 (216)
43 cd03293 ABC_NrtD_SsuB_transpor 99.8 4.4E-19 9.6E-24 188.7 14.5 141 659-799 17-202 (220)
44 cd03292 ABC_FtsE_transporter F 99.8 4.5E-19 9.7E-24 187.8 13.3 139 655-794 10-200 (214)
45 TIGR01166 cbiO cobalt transpor 99.8 4E-19 8.6E-24 184.7 12.5 135 657-792 3-189 (190)
46 cd03214 ABC_Iron-Siderophores_ 99.8 4.2E-19 9.1E-24 182.9 12.6 139 659-799 12-168 (180)
47 COG1117 PstB ABC-type phosphat 99.8 2.4E-19 5.2E-24 180.9 9.9 150 657-810 18-226 (253)
48 TIGR02673 FtsE cell division A 99.8 5.1E-19 1.1E-23 187.3 13.1 136 658-794 14-201 (214)
49 cd03265 ABC_DrrA DrrA is the A 99.8 6.9E-19 1.5E-23 187.2 13.8 141 658-799 12-202 (220)
50 cd03225 ABC_cobalt_CbiO_domain 99.8 6.6E-19 1.4E-23 186.1 13.4 135 659-794 14-198 (211)
51 COG1137 YhbG ABC-type (unclass 99.8 9.8E-20 2.1E-24 181.8 6.6 150 657-807 15-217 (243)
52 cd03259 ABC_Carb_Solutes_like 99.8 7.3E-19 1.6E-23 186.1 13.7 140 658-798 12-200 (213)
53 COG1135 AbcC ABC-type metal io 99.8 5.6E-19 1.2E-23 187.8 12.7 157 659-817 19-227 (339)
54 TIGR01288 nodI ATP-binding ABC 99.8 5.9E-19 1.3E-23 196.8 13.5 147 658-805 16-211 (303)
55 TIGR02211 LolD_lipo_ex lipopro 99.8 9.8E-19 2.1E-23 186.1 14.5 137 659-796 18-208 (221)
56 cd03256 ABC_PhnC_transporter A 99.8 7.9E-19 1.7E-23 189.3 13.9 139 659-798 14-214 (241)
57 COG1122 CbiO ABC-type cobalt t 99.8 4.4E-19 9.5E-24 188.5 11.5 148 650-798 8-208 (235)
58 PRK11650 ugpC glycerol-3-phosp 99.8 6.7E-19 1.4E-23 199.7 13.6 150 657-806 15-212 (356)
59 cd03261 ABC_Org_Solvent_Resist 99.8 1E-18 2.2E-23 187.9 14.1 141 658-799 12-207 (235)
60 TIGR02315 ABC_phnC phosphonate 99.8 7.8E-19 1.7E-23 189.7 13.2 140 658-798 14-215 (243)
61 TIGR02314 ABC_MetN D-methionin 99.8 1.1E-18 2.4E-23 196.5 14.8 141 659-800 18-212 (343)
62 PRK11247 ssuB aliphatic sulfon 99.8 1.4E-18 2.9E-23 189.0 15.1 142 658-799 24-204 (257)
63 PRK09536 btuD corrinoid ABC tr 99.8 8.9E-19 1.9E-23 200.7 14.0 148 657-805 14-215 (402)
64 PRK11629 lolD lipoprotein tran 99.8 1.8E-18 3.8E-23 185.8 15.4 137 659-796 22-212 (233)
65 PRK13647 cbiO cobalt transport 99.8 9.5E-19 2.1E-23 192.3 13.5 151 654-805 13-214 (274)
66 cd03268 ABC_BcrA_bacitracin_re 99.8 1.4E-18 3E-23 183.3 13.9 141 658-799 12-196 (208)
67 PRK13644 cbiO cobalt transport 99.8 1.3E-18 2.8E-23 191.2 13.9 144 655-799 11-205 (274)
68 cd03269 ABC_putative_ATPase Th 99.8 1.7E-18 3.7E-23 182.8 14.2 140 658-798 12-197 (210)
69 cd03219 ABC_Mj1267_LivG_branch 99.8 1.2E-18 2.5E-23 187.5 13.1 141 658-799 12-213 (236)
70 TIGR01186 proV glycine betaine 99.8 1.2E-18 2.6E-23 197.2 13.8 149 657-805 4-206 (363)
71 cd03258 ABC_MetN_methionine_tr 99.8 1.6E-18 3.4E-23 186.1 13.9 142 660-801 19-213 (233)
72 PRK10584 putative ABC transpor 99.8 1.9E-18 4.1E-23 184.8 14.4 137 660-797 24-214 (228)
73 COG3842 PotA ABC-type spermidi 99.8 5.6E-19 1.2E-23 195.9 10.6 144 657-800 16-208 (352)
74 TIGR03265 PhnT2 putative 2-ami 99.8 1.5E-18 3.3E-23 196.6 14.3 150 658-807 16-213 (353)
75 cd03246 ABCC_Protease_Secretio 99.8 2E-18 4.3E-23 176.7 13.6 123 659-797 15-163 (173)
76 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 2.5E-18 5.4E-23 184.9 15.0 140 658-797 13-200 (236)
77 cd03218 ABC_YhbG The ABC trans 99.8 1.5E-18 3.3E-23 186.0 13.3 141 658-799 12-203 (232)
78 PRK10908 cell division protein 99.8 1.9E-18 4.1E-23 184.1 13.9 137 657-794 13-201 (222)
79 cd03263 ABC_subfamily_A The AB 99.8 1.5E-18 3.3E-23 184.5 13.0 139 659-799 15-202 (220)
80 cd03301 ABC_MalK_N The N-termi 99.8 1.8E-18 3.8E-23 183.1 13.2 140 658-798 12-200 (213)
81 TIGR03522 GldA_ABC_ATP gliding 99.8 2.4E-18 5.3E-23 191.6 14.9 148 658-807 14-210 (301)
82 cd03262 ABC_HisP_GlnQ_permease 99.8 2.1E-18 4.5E-23 182.5 13.4 139 658-797 12-203 (213)
83 TIGR03608 L_ocin_972_ABC putat 99.8 2.2E-18 4.7E-23 181.4 13.3 138 658-796 10-200 (206)
84 cd03235 ABC_Metallic_Cations A 99.8 1.8E-18 4E-23 183.0 12.9 140 658-798 11-201 (213)
85 cd03238 ABC_UvrA The excision 99.8 1.9E-18 4.1E-23 176.5 12.2 133 658-797 7-156 (176)
86 PRK13637 cbiO cobalt transport 99.8 3.3E-18 7.1E-23 189.2 15.0 146 659-805 20-221 (287)
87 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2.4E-18 5.2E-23 188.7 13.7 142 657-798 35-230 (269)
88 cd03227 ABC_Class2 ABC-type Cl 99.8 2.5E-18 5.3E-23 174.1 12.7 121 660-797 11-148 (162)
89 PRK11432 fbpC ferric transport 99.8 2.5E-18 5.3E-23 194.6 14.0 150 658-807 18-215 (351)
90 PRK11000 maltose/maltodextrin 99.8 2.2E-18 4.7E-23 196.7 13.7 147 658-804 15-209 (369)
91 cd03266 ABC_NatA_sodium_export 99.8 2.8E-18 6.1E-23 182.2 13.6 138 660-798 19-205 (218)
92 cd03224 ABC_TM1139_LivF_branch 99.8 2.4E-18 5.3E-23 183.2 12.9 141 658-799 12-202 (222)
93 COG1118 CysA ABC-type sulfate/ 99.8 1.7E-18 3.6E-23 183.7 11.4 154 657-810 13-219 (345)
94 COG3839 MalK ABC-type sugar tr 99.8 1.6E-18 3.6E-23 191.2 11.7 139 661-799 18-204 (338)
95 cd03296 ABC_CysA_sulfate_impor 99.8 2.7E-18 5.8E-23 185.1 13.2 140 658-798 14-206 (239)
96 PRK11153 metN DL-methionine tr 99.8 4.1E-18 8.9E-23 192.9 15.3 143 658-801 17-213 (343)
97 PRK13635 cbiO cobalt transport 99.8 3.4E-18 7.4E-23 188.4 14.0 140 658-798 19-209 (279)
98 PRK13650 cbiO cobalt transport 99.8 4.1E-18 8.8E-23 187.8 14.3 140 659-799 20-210 (279)
99 PRK10851 sulfate/thiosulfate t 99.8 3.7E-18 8E-23 193.5 14.3 149 658-806 14-214 (353)
100 COG4598 HisP ABC-type histidin 99.8 2E-18 4.3E-23 169.1 10.1 171 643-820 7-240 (256)
101 PRK11300 livG leucine/isoleuci 99.8 5.1E-18 1.1E-22 184.7 14.6 140 658-798 17-223 (255)
102 TIGR03258 PhnT 2-aminoethylpho 99.8 3.3E-18 7.1E-23 194.2 13.5 147 658-805 17-215 (362)
103 PRK13652 cbiO cobalt transport 99.8 3.4E-18 7.4E-23 188.3 13.3 151 654-805 12-214 (277)
104 PRK09452 potA putrescine/sperm 99.8 3.6E-18 7.8E-23 194.6 13.9 150 658-807 26-223 (375)
105 cd03216 ABC_Carb_Monos_I This 99.8 5.4E-18 1.2E-22 171.8 13.3 132 658-798 12-151 (163)
106 PRK11248 tauB taurine transpor 99.8 4E-18 8.7E-23 185.4 13.2 140 658-798 13-198 (255)
107 cd03230 ABC_DR_subfamily_A Thi 99.8 4.4E-18 9.6E-23 174.2 12.7 125 659-797 13-163 (173)
108 COG0411 LivG ABC-type branched 99.8 9.2E-19 2E-23 181.4 7.5 142 657-799 15-220 (250)
109 PRK11264 putative amino-acid A 99.8 7E-18 1.5E-22 183.1 14.8 141 658-799 15-214 (250)
110 cd03260 ABC_PstB_phosphate_tra 99.8 8.4E-18 1.8E-22 179.8 15.2 145 658-804 12-215 (227)
111 PRK09493 glnQ glutamine ABC tr 99.8 6.7E-18 1.4E-22 182.1 14.5 141 658-799 13-206 (240)
112 cd03267 ABC_NatA_like Similar 99.8 5.8E-18 1.3E-22 182.1 14.0 143 657-799 32-224 (236)
113 cd03237 ABC_RNaseL_inhibitor_d 99.8 3.5E-18 7.5E-23 184.6 12.3 127 668-794 25-180 (246)
114 COG1124 DppF ABC-type dipeptid 99.8 4E-18 8.6E-23 176.5 12.0 148 660-807 21-220 (252)
115 PRK13636 cbiO cobalt transport 99.8 4.7E-18 1E-22 187.7 13.6 151 650-801 10-214 (283)
116 TIGR03410 urea_trans_UrtE urea 99.8 4.2E-18 9.1E-23 182.4 12.8 141 658-799 12-202 (230)
117 cd03295 ABC_OpuCA_Osmoprotecti 99.8 7.8E-18 1.7E-22 181.8 14.9 140 659-799 14-206 (242)
118 PRK11607 potG putrescine trans 99.8 5.2E-18 1.1E-22 193.6 14.2 148 658-805 31-226 (377)
119 cd03228 ABCC_MRP_Like The MRP 99.8 4.2E-18 9.2E-23 174.0 12.1 120 660-796 16-161 (171)
120 PRK10895 lipopolysaccharide AB 99.8 4.8E-18 1E-22 183.3 13.1 141 658-799 15-207 (241)
121 PRK13638 cbiO cobalt transport 99.8 4.8E-18 1.1E-22 186.5 13.3 141 658-799 13-206 (271)
122 PRK13538 cytochrome c biogenes 99.8 5.2E-18 1.1E-22 178.4 12.9 137 658-795 13-194 (204)
123 PRK11831 putative ABC transpor 99.8 6.3E-18 1.4E-22 185.4 14.0 137 658-794 19-208 (269)
124 TIGR03740 galliderm_ABC gallid 99.8 7E-18 1.5E-22 179.9 13.9 144 658-802 12-197 (223)
125 TIGR03415 ABC_choXWV_ATP choli 99.8 5.1E-18 1.1E-22 193.0 13.6 150 657-806 35-242 (382)
126 PRK13651 cobalt transporter AT 99.8 5.3E-18 1.1E-22 188.8 13.3 142 660-802 21-238 (305)
127 PRK13633 cobalt transporter AT 99.8 5E-18 1.1E-22 187.3 13.0 138 659-797 23-212 (280)
128 cd03247 ABCC_cytochrome_bd The 99.8 6.4E-18 1.4E-22 173.8 13.0 125 659-797 15-164 (178)
129 COG4181 Predicted ABC-type tra 99.7 7E-18 1.5E-22 164.3 12.3 150 657-806 21-223 (228)
130 PRK13632 cbiO cobalt transport 99.7 6.7E-18 1.5E-22 185.4 13.8 139 658-797 21-210 (271)
131 PRK09544 znuC high-affinity zi 99.7 6.1E-18 1.3E-22 183.4 13.2 140 658-798 16-190 (251)
132 PRK13648 cbiO cobalt transport 99.7 6.2E-18 1.3E-22 185.5 13.4 138 659-797 22-210 (269)
133 PRK13639 cbiO cobalt transport 99.7 8.2E-18 1.8E-22 185.1 14.4 145 654-799 10-207 (275)
134 PRK10070 glycine betaine trans 99.7 6.3E-18 1.4E-22 193.6 13.9 143 657-799 39-235 (400)
135 PRK15056 manganese/iron transp 99.7 7E-18 1.5E-22 185.3 13.7 139 654-793 15-205 (272)
136 cd03223 ABCD_peroxisomal_ALDP 99.7 6E-18 1.3E-22 172.0 12.2 129 657-797 12-155 (166)
137 PRK14250 phosphate ABC transpo 99.7 7.8E-18 1.7E-22 181.7 13.6 143 658-801 15-204 (241)
138 TIGR03411 urea_trans_UrtD urea 99.7 8.6E-18 1.9E-22 181.5 13.9 140 658-799 14-212 (242)
139 PRK13643 cbiO cobalt transport 99.7 6.1E-18 1.3E-22 187.2 13.0 146 660-806 20-221 (288)
140 PRK13548 hmuV hemin importer A 99.7 6.7E-18 1.5E-22 184.0 13.1 141 658-798 14-210 (258)
141 PRK10247 putative ABC transpor 99.7 1.1E-17 2.3E-22 178.7 14.3 140 658-797 19-205 (225)
142 cd03231 ABC_CcmA_heme_exporter 99.7 8.6E-18 1.9E-22 176.3 13.2 134 658-792 12-187 (201)
143 PRK10575 iron-hydroxamate tran 99.7 7.9E-18 1.7E-22 184.3 13.4 141 658-799 23-218 (265)
144 TIGR02982 heterocyst_DevA ABC 99.7 9.8E-18 2.1E-22 178.4 13.8 140 659-798 18-210 (220)
145 PRK13540 cytochrome c biogenes 99.7 1.1E-17 2.4E-22 175.4 13.9 139 658-797 13-194 (200)
146 TIGR01184 ntrCD nitrate transp 99.7 6.1E-18 1.3E-22 181.2 12.2 134 668-801 11-187 (230)
147 cd03264 ABC_drug_resistance_li 99.7 9.5E-18 2.1E-22 177.3 13.5 138 658-798 12-198 (211)
148 PRK13641 cbiO cobalt transport 99.7 1.1E-17 2.3E-22 185.3 14.3 140 659-799 20-215 (287)
149 cd03229 ABC_Class3 This class 99.7 8.7E-18 1.9E-22 172.8 12.6 132 658-794 12-165 (178)
150 PRK13640 cbiO cobalt transport 99.7 7.9E-18 1.7E-22 185.8 13.2 139 659-798 20-212 (282)
151 smart00533 MUTSd DNA-binding d 99.7 3.9E-17 8.5E-22 182.6 19.0 289 305-651 2-304 (308)
152 TIGR03873 F420-0_ABC_ATP propo 99.7 8.9E-18 1.9E-22 182.9 13.4 141 658-799 13-207 (256)
153 PRK11124 artP arginine transpo 99.7 9.6E-18 2.1E-22 181.1 13.5 144 658-802 14-214 (242)
154 PRK10253 iron-enterobactin tra 99.7 8E-18 1.7E-22 184.2 13.0 141 658-799 19-214 (265)
155 PRK13539 cytochrome c biogenes 99.7 1.1E-17 2.3E-22 176.4 13.5 137 658-795 14-192 (207)
156 TIGR01978 sufC FeS assembly AT 99.7 1.4E-17 3.1E-22 179.8 14.7 137 658-795 12-209 (243)
157 TIGR03005 ectoine_ehuA ectoine 99.7 9.1E-18 2E-22 182.4 13.2 142 658-799 12-217 (252)
158 TIGR01189 ccmA heme ABC export 99.7 1E-17 2.2E-22 175.3 13.1 133 658-791 12-188 (198)
159 cd03298 ABC_ThiQ_thiamine_tran 99.7 1.1E-17 2.4E-22 176.7 13.4 136 664-799 16-199 (211)
160 PRK13646 cbiO cobalt transport 99.7 1.3E-17 2.8E-22 184.5 14.3 140 659-799 20-216 (286)
161 PRK11231 fecE iron-dicitrate t 99.7 1.2E-17 2.6E-22 181.8 13.7 139 658-797 14-206 (255)
162 PRK13634 cbiO cobalt transport 99.7 1.4E-17 3E-22 184.6 14.4 146 659-805 20-222 (290)
163 cd03257 ABC_NikE_OppD_transpor 99.7 1.2E-17 2.7E-22 178.4 13.6 139 660-798 19-215 (228)
164 PRK11614 livF leucine/isoleuci 99.7 9.9E-18 2.1E-22 180.4 12.7 140 658-798 17-206 (237)
165 TIGR02769 nickel_nikE nickel i 99.7 1.2E-17 2.6E-22 182.9 13.4 141 658-798 23-220 (265)
166 PRK09984 phosphonate/organopho 99.7 1.1E-17 2.4E-22 182.8 13.1 141 658-799 16-223 (262)
167 COG0410 LivF ABC-type branched 99.7 1.2E-17 2.6E-22 171.9 12.4 149 657-806 14-214 (237)
168 cd03245 ABCC_bacteriocin_expor 99.7 8.9E-18 1.9E-22 178.6 12.0 138 659-798 17-207 (220)
169 cd03254 ABCC_Glucan_exporter_l 99.7 8.3E-18 1.8E-22 180.0 11.8 138 658-797 15-205 (229)
170 cd03252 ABCC_Hemolysin The ABC 99.7 1.6E-17 3.4E-22 178.9 14.0 138 658-797 14-204 (237)
171 PRK13543 cytochrome c biogenes 99.7 1.6E-17 3.5E-22 175.9 13.5 136 658-794 23-201 (214)
172 cd03232 ABC_PDR_domain2 The pl 99.7 1.7E-17 3.6E-22 172.9 13.1 131 659-798 20-178 (192)
173 PRK11022 dppD dipeptide transp 99.7 1.7E-17 3.6E-22 186.5 14.0 141 659-799 20-224 (326)
174 PRK15439 autoinducer 2 ABC tra 99.7 1.8E-17 3.8E-22 198.0 15.0 153 651-805 17-216 (510)
175 PRK10619 histidine/lysine/argi 99.7 1.8E-17 4E-22 180.5 13.7 141 658-799 17-222 (257)
176 cd03251 ABCC_MsbA MsbA is an e 99.7 1.3E-17 2.8E-22 179.2 12.2 138 660-799 16-206 (234)
177 PRK10418 nikD nickel transport 99.7 2.2E-17 4.8E-22 179.6 14.2 147 658-804 15-216 (254)
178 PRK13649 cbiO cobalt transport 99.7 2.4E-17 5.3E-22 181.9 14.6 140 659-799 20-215 (280)
179 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 2.2E-17 4.7E-22 176.2 13.6 141 657-798 33-211 (224)
180 cd03250 ABCC_MRP_domain1 Domai 99.7 1.6E-17 3.5E-22 174.7 12.4 138 659-796 18-194 (204)
181 TIGR00968 3a0106s01 sulfate AB 99.7 2E-17 4.3E-22 178.1 13.3 149 658-807 12-209 (237)
182 TIGR02770 nickel_nikD nickel i 99.7 1.1E-17 2.4E-22 179.2 11.3 138 662-799 2-196 (230)
183 PRK10762 D-ribose transporter 99.7 2.4E-17 5.3E-22 196.5 15.3 148 658-806 16-218 (501)
184 COG4619 ABC-type uncharacteriz 99.7 1.3E-17 2.8E-22 162.0 10.4 151 656-806 13-211 (223)
185 cd03253 ABCC_ATM1_transporter 99.7 2.7E-17 5.8E-22 176.9 14.1 138 658-797 13-203 (236)
186 PRK15093 antimicrobial peptide 99.7 2.2E-17 4.9E-22 186.0 14.0 141 658-799 19-229 (330)
187 cd03234 ABCG_White The White s 99.7 2.3E-17 4.9E-22 176.3 13.2 140 659-799 20-214 (226)
188 PRK13642 cbiO cobalt transport 99.7 1.8E-17 3.9E-22 182.5 12.8 138 659-797 20-208 (277)
189 cd03213 ABCG_EPDR ABCG transpo 99.7 2.3E-17 4.9E-22 172.1 12.8 132 659-799 22-182 (194)
190 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 3.1E-17 6.7E-22 176.7 14.2 138 659-798 16-206 (238)
191 COG4175 ProV ABC-type proline/ 99.7 1.4E-17 3E-22 176.8 11.1 135 660-794 42-229 (386)
192 PRK15079 oligopeptide ABC tran 99.7 2.3E-17 4.9E-22 185.6 13.6 140 659-799 34-232 (331)
193 PRK10419 nikE nickel transport 99.7 3.2E-17 7E-22 179.7 14.3 144 658-801 24-224 (268)
194 TIGR01277 thiQ thiamine ABC tr 99.7 3E-17 6.6E-22 173.7 13.7 138 662-799 14-199 (213)
195 PRK11701 phnK phosphonate C-P 99.7 2.6E-17 5.7E-22 179.4 13.6 148 658-805 18-228 (258)
196 PRK09700 D-allose transporter 99.7 3E-17 6.5E-22 196.2 15.3 147 658-805 17-221 (510)
197 PRK15112 antimicrobial peptide 99.7 2.1E-17 4.5E-22 181.1 12.8 140 659-798 26-219 (267)
198 cd03217 ABC_FeS_Assembly ABC-t 99.7 1.4E-17 3E-22 174.6 10.7 134 658-799 12-175 (200)
199 PRK13549 xylose transporter AT 99.7 2.6E-17 5.6E-22 196.5 14.5 148 658-806 17-220 (506)
200 PRK14268 phosphate ABC transpo 99.7 4.2E-17 9E-22 177.9 14.8 140 658-799 24-223 (258)
201 cd03215 ABC_Carb_Monos_II This 99.7 3E-17 6.5E-22 169.5 12.9 131 661-797 15-172 (182)
202 PRK03695 vitamin B12-transport 99.7 3E-17 6.4E-22 177.9 13.4 138 661-799 11-203 (248)
203 COG3840 ThiQ ABC-type thiamine 99.7 2.4E-17 5.2E-22 162.3 11.3 143 664-806 19-207 (231)
204 PRK13645 cbiO cobalt transport 99.7 2.8E-17 6.1E-22 182.2 13.5 140 660-799 25-221 (289)
205 cd03244 ABCC_MRP_domain2 Domai 99.7 2.3E-17 4.9E-22 175.7 12.2 137 659-797 17-205 (221)
206 PRK14237 phosphate transporter 99.7 7.2E-17 1.6E-21 176.9 16.5 144 657-802 31-235 (267)
207 cd03290 ABCC_SUR1_N The SUR do 99.7 2.7E-17 5.8E-22 174.8 12.6 143 654-796 9-208 (218)
208 cd03222 ABC_RNaseL_inhibitor T 99.7 2.2E-17 4.7E-22 168.9 11.3 121 658-794 12-136 (177)
209 cd03248 ABCC_TAP TAP, the Tran 99.7 2.9E-17 6.2E-22 175.5 12.8 137 659-797 27-216 (226)
210 TIGR02142 modC_ABC molybdenum 99.7 3E-17 6.5E-22 186.7 13.6 144 664-807 15-210 (354)
211 PRK13631 cbiO cobalt transport 99.7 5E-17 1.1E-21 182.1 15.0 142 659-801 39-248 (320)
212 COG1119 ModF ABC-type molybden 99.7 2.5E-17 5.3E-22 170.8 11.3 138 657-794 42-237 (257)
213 PRK11308 dppF dipeptide transp 99.7 3.5E-17 7.7E-22 183.8 13.3 141 659-799 28-225 (327)
214 PRK13541 cytochrome c biogenes 99.7 4.4E-17 9.4E-22 170.1 13.1 137 659-797 14-190 (195)
215 TIGR02323 CP_lyasePhnK phospho 99.7 4.6E-17 9.9E-22 177.0 13.7 141 658-798 15-218 (253)
216 PRK14242 phosphate transporter 99.7 6.2E-17 1.3E-21 176.0 14.7 140 658-799 18-218 (253)
217 PRK10938 putative molybdenum t 99.7 3.4E-17 7.4E-22 194.9 13.7 141 658-799 15-205 (490)
218 COG4525 TauB ABC-type taurine 99.7 2E-17 4.4E-22 164.4 9.6 146 650-795 8-198 (259)
219 TIGR00972 3a0107s01c2 phosphat 99.7 5.7E-17 1.2E-21 175.6 14.2 140 658-799 13-213 (247)
220 TIGR02324 CP_lyasePhnL phospho 99.7 5.1E-17 1.1E-21 173.3 13.3 138 659-797 21-217 (224)
221 cd03297 ABC_ModC_molybdenum_tr 99.7 5.4E-17 1.2E-21 171.9 13.2 134 664-798 16-201 (214)
222 PRK11144 modC molybdate transp 99.7 4.2E-17 9.2E-22 185.3 13.2 142 664-805 16-205 (352)
223 PRK14245 phosphate ABC transpo 99.7 1.1E-16 2.3E-21 173.8 15.8 143 658-802 15-218 (250)
224 cd03300 ABC_PotA_N PotA is an 99.7 7.3E-17 1.6E-21 173.1 14.2 141 658-799 12-201 (232)
225 PRK09473 oppD oligopeptide tra 99.7 5.1E-17 1.1E-21 182.8 13.4 141 659-799 29-232 (330)
226 PRK10982 galactose/methyl gala 99.7 6.3E-17 1.4E-21 192.6 14.8 147 658-805 10-210 (491)
227 PRK14275 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 176.8 15.9 139 658-798 51-250 (286)
228 PRK13546 teichoic acids export 99.7 3.9E-17 8.5E-22 178.2 11.8 141 657-798 35-212 (264)
229 PRK10771 thiQ thiamine transpo 99.7 6.9E-17 1.5E-21 173.3 13.4 135 664-798 17-199 (232)
230 PRK09580 sufC cysteine desulfu 99.7 9.8E-17 2.1E-21 173.8 14.5 137 658-795 13-210 (248)
231 PRK13547 hmuV hemin importer A 99.7 5.4E-17 1.2E-21 178.0 12.5 139 658-797 13-223 (272)
232 PRK13545 tagH teichoic acids e 99.7 3.9E-17 8.4E-22 189.3 11.7 142 659-802 37-216 (549)
233 PRK13549 xylose transporter AT 99.7 7.6E-17 1.7E-21 192.5 14.7 140 658-798 274-474 (506)
234 PRK14247 phosphate ABC transpo 99.7 1.1E-16 2.4E-21 173.6 14.7 140 658-799 15-215 (250)
235 PRK14235 phosphate transporter 99.7 1.3E-16 2.9E-21 174.7 15.3 139 658-798 31-231 (267)
236 TIGR03269 met_CoM_red_A2 methy 99.7 8.2E-17 1.8E-21 193.0 14.6 142 658-799 12-239 (520)
237 PRK10744 pstB phosphate transp 99.7 1.1E-16 2.4E-21 174.7 14.4 140 658-799 25-225 (260)
238 PRK11288 araG L-arabinose tran 99.7 9.2E-17 2E-21 191.6 14.9 141 658-799 16-210 (501)
239 cd03236 ABC_RNaseL_inhibitor_d 99.7 5.8E-17 1.2E-21 175.9 11.8 137 659-797 14-207 (255)
240 PRK14273 phosphate ABC transpo 99.7 9.8E-17 2.1E-21 174.5 13.5 139 658-798 19-218 (254)
241 PRK14269 phosphate ABC transpo 99.7 1.5E-16 3.2E-21 172.3 14.8 140 658-799 14-211 (246)
242 cd03289 ABCC_CFTR2 The CFTR su 99.7 5.2E-17 1.1E-21 178.0 11.4 139 657-797 15-204 (275)
243 CHL00131 ycf16 sulfate ABC tra 99.7 1.1E-16 2.5E-21 173.8 13.8 137 658-795 19-216 (252)
244 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 7.8E-17 1.7E-21 159.8 11.4 114 659-794 13-131 (144)
245 PRK14244 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 173.5 13.7 145 658-804 17-223 (251)
246 TIGR02633 xylG D-xylose ABC tr 99.7 9.6E-17 2.1E-21 191.5 14.2 142 658-800 13-212 (500)
247 cd03299 ABC_ModC_like Archeal 99.7 1.1E-16 2.4E-21 172.1 13.2 138 661-799 14-200 (235)
248 PRK14248 phosphate ABC transpo 99.7 1.5E-16 3.2E-21 174.5 14.4 147 650-799 26-233 (268)
249 PRK09700 D-allose transporter 99.7 1.3E-16 2.8E-21 190.8 14.9 137 660-797 277-477 (510)
250 TIGR02633 xylG D-xylose ABC tr 99.7 1.1E-16 2.4E-21 191.0 14.3 141 658-799 272-473 (500)
251 PRK14274 phosphate ABC transpo 99.7 1.6E-16 3.4E-21 173.5 14.1 140 658-799 24-224 (259)
252 COG4586 ABC-type uncharacteriz 99.7 3.4E-17 7.3E-22 170.9 8.2 150 660-809 38-237 (325)
253 PRK14256 phosphate ABC transpo 99.7 1.4E-16 3E-21 173.2 13.5 141 658-800 16-218 (252)
254 PRK15439 autoinducer 2 ABC tra 99.7 8.7E-17 1.9E-21 192.0 12.9 137 661-798 278-472 (510)
255 PRK11288 araG L-arabinose tran 99.7 1.5E-16 3.2E-21 189.8 14.6 138 660-798 267-465 (501)
256 PRK14267 phosphate ABC transpo 99.7 1.8E-16 3.9E-21 172.3 13.9 140 658-799 16-218 (253)
257 PRK14241 phosphate transporter 99.7 2.1E-16 4.6E-21 172.3 14.5 139 658-798 16-216 (258)
258 TIGR03771 anch_rpt_ABC anchore 99.7 1.2E-16 2.7E-21 170.3 12.3 130 668-798 6-182 (223)
259 cd03369 ABCC_NFT1 Domain 2 of 99.7 1.8E-16 3.9E-21 167.1 13.3 133 659-797 21-191 (207)
260 cd03233 ABC_PDR_domain1 The pl 99.7 3.1E-16 6.7E-21 164.6 14.8 139 658-799 19-190 (202)
261 PRK14251 phosphate ABC transpo 99.7 2.2E-16 4.7E-21 171.5 13.9 140 658-799 16-216 (251)
262 PRK14262 phosphate ABC transpo 99.7 3.1E-16 6.8E-21 170.1 15.2 140 658-799 15-215 (250)
263 TIGR01257 rim_protein retinal- 99.7 7.5E-17 1.6E-21 211.4 12.2 151 659-810 1952-2151(2272)
264 COG0444 DppD ABC-type dipeptid 99.7 1.3E-16 2.8E-21 172.4 11.6 155 658-815 17-237 (316)
265 PRK14239 phosphate transporter 99.7 2.9E-16 6.2E-21 170.6 14.5 142 658-801 17-219 (252)
266 PRK14240 phosphate transporter 99.7 2.8E-16 6.2E-21 170.5 14.4 140 658-799 15-215 (250)
267 PRK14270 phosphate ABC transpo 99.7 2E-16 4.3E-21 171.8 13.1 140 658-799 16-216 (251)
268 PRK14259 phosphate ABC transpo 99.7 2.3E-16 5.1E-21 173.0 13.7 138 658-797 25-221 (269)
269 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.9E-16 4.2E-21 159.4 11.9 128 659-795 12-145 (157)
270 PRK10762 D-ribose transporter 99.7 1.8E-16 3.8E-21 189.1 13.7 134 660-794 266-459 (501)
271 PRK10938 putative molybdenum t 99.7 1.5E-16 3.3E-21 189.3 12.8 136 658-794 272-466 (490)
272 cd03288 ABCC_SUR2 The SUR doma 99.7 3.6E-16 7.9E-21 170.4 14.6 137 659-797 34-222 (257)
273 COG4559 ABC-type hemin transpo 99.7 1.6E-16 3.4E-21 160.4 10.6 141 657-798 12-210 (259)
274 COG1129 MglA ABC-type sugar tr 99.7 2.7E-16 5.8E-21 180.5 13.9 148 657-805 19-221 (500)
275 PRK14246 phosphate ABC transpo 99.7 2.5E-16 5.5E-21 171.5 13.1 141 657-799 21-222 (257)
276 TIGR01257 rim_protein retinal- 99.7 1.6E-16 3.4E-21 208.5 13.2 150 658-809 942-1140(2272)
277 PRK10982 galactose/methyl gala 99.7 2.1E-16 4.5E-21 188.1 13.2 139 659-798 261-460 (491)
278 PRK14255 phosphate ABC transpo 99.7 3.9E-16 8.6E-21 169.6 14.3 140 658-799 17-217 (252)
279 COG0396 sufC Cysteine desulfur 99.7 2.3E-16 5E-21 161.6 11.6 137 659-796 17-210 (251)
280 PRK15134 microcin C ABC transp 99.7 2.1E-16 4.6E-21 189.7 13.3 147 659-806 22-234 (529)
281 TIGR03269 met_CoM_red_A2 methy 99.7 4.1E-16 9E-21 186.9 15.5 140 659-798 297-497 (520)
282 PRK14265 phosphate ABC transpo 99.7 3.4E-16 7.5E-21 172.1 13.6 139 658-798 32-229 (274)
283 cd03291 ABCC_CFTR1 The CFTR su 99.7 3.6E-16 7.7E-21 172.1 13.6 138 658-796 49-225 (282)
284 PRK15177 Vi polysaccharide exp 99.7 1.8E-16 3.8E-21 167.8 10.7 135 661-798 2-172 (213)
285 PRK14261 phosphate ABC transpo 99.7 4.9E-16 1.1E-20 169.0 14.3 140 658-799 18-218 (253)
286 PRK15134 microcin C ABC transp 99.7 2.1E-16 4.5E-21 189.8 12.5 141 658-799 298-496 (529)
287 PRK14264 phosphate ABC transpo 99.7 5E-16 1.1E-20 173.3 14.7 138 658-797 57-267 (305)
288 PRK14253 phosphate ABC transpo 99.7 5.8E-16 1.2E-20 168.0 14.7 140 658-799 15-214 (249)
289 PRK10261 glutathione transport 99.7 3.1E-16 6.7E-21 191.3 14.0 140 659-798 337-533 (623)
290 PRK14254 phosphate ABC transpo 99.7 3.7E-16 8E-21 172.7 13.2 135 658-794 51-243 (285)
291 PRK14249 phosphate ABC transpo 99.7 6E-16 1.3E-20 168.1 14.6 140 658-799 16-216 (251)
292 COG4161 ArtP ABC-type arginine 99.7 7.4E-16 1.6E-20 148.5 13.3 151 657-808 13-220 (242)
293 PRK10261 glutathione transport 99.7 4.1E-16 8.8E-21 190.2 14.7 147 659-806 29-246 (623)
294 PRK14272 phosphate ABC transpo 99.7 5.7E-16 1.2E-20 168.3 14.0 142 658-801 16-219 (252)
295 PRK14271 phosphate ABC transpo 99.7 7.1E-16 1.5E-20 169.7 14.6 148 649-799 25-232 (276)
296 PRK13409 putative ATPase RIL; 99.7 3.7E-16 8.1E-21 188.2 13.3 135 660-794 353-518 (590)
297 PRK14238 phosphate transporter 99.7 6.7E-16 1.5E-20 169.5 14.0 140 658-799 36-236 (271)
298 PRK14257 phosphate ABC transpo 99.7 5.1E-16 1.1E-20 174.5 13.3 147 657-805 93-300 (329)
299 PRK14236 phosphate transporter 99.7 6.1E-16 1.3E-20 170.0 13.4 142 658-801 37-239 (272)
300 PRK15064 ABC transporter ATP-b 99.7 3.7E-16 8E-21 187.7 12.7 138 658-799 13-222 (530)
301 PRK11819 putative ABC transpor 99.7 4.7E-16 1E-20 187.6 13.3 140 650-794 11-224 (556)
302 PRK14263 phosphate ABC transpo 99.7 8.5E-16 1.8E-20 167.8 14.0 140 657-798 19-217 (261)
303 PRK14258 phosphate ABC transpo 99.7 8.4E-16 1.8E-20 167.9 13.8 140 658-798 19-220 (261)
304 PRK14252 phosphate ABC transpo 99.6 1.2E-15 2.7E-20 167.0 14.9 140 658-799 28-230 (265)
305 COG4133 CcmA ABC-type transpor 99.6 1.1E-15 2.3E-20 152.1 12.9 134 657-791 13-191 (209)
306 PRK10522 multidrug transporter 99.6 7.3E-16 1.6E-20 185.8 14.3 156 649-804 326-524 (547)
307 COG1123 ATPase components of v 99.6 8E-16 1.7E-20 177.7 13.7 153 659-814 22-237 (539)
308 PRK14260 phosphate ABC transpo 99.6 9.3E-16 2E-20 167.4 13.3 135 658-794 19-213 (259)
309 COG2274 SunT ABC-type bacterio 99.6 2.3E-15 5E-20 182.7 18.0 154 650-805 476-683 (709)
310 PRK14266 phosphate ABC transpo 99.6 1.5E-15 3.4E-20 164.7 14.8 136 658-795 15-210 (250)
311 COG3845 ABC-type uncharacteriz 99.6 1.5E-15 3.2E-20 170.9 14.4 148 658-806 16-217 (501)
312 COG1134 TagH ABC-type polysacc 99.6 3.5E-16 7.5E-21 162.6 8.7 150 657-807 38-225 (249)
313 COG4604 CeuD ABC-type enteroch 99.6 3.9E-16 8.5E-21 155.7 8.6 137 657-794 12-200 (252)
314 PRK14243 phosphate transporter 99.6 1.2E-15 2.5E-20 167.0 13.3 135 658-794 22-214 (264)
315 PRK13409 putative ATPase RIL; 99.6 6.7E-16 1.5E-20 186.1 12.4 140 653-794 81-275 (590)
316 COG4988 CydD ABC-type transpor 99.6 3.8E-15 8.1E-20 171.5 17.3 163 642-807 318-532 (559)
317 TIGR01187 potA spermidine/putr 99.6 6.8E-16 1.5E-20 173.6 11.0 134 673-806 1-178 (325)
318 PLN03211 ABC transporter G-25; 99.6 6.1E-16 1.3E-20 188.7 11.3 150 658-808 80-286 (659)
319 KOG0057 Mitochondrial Fe/S clu 99.6 6.6E-15 1.4E-19 166.9 18.4 163 643-810 352-566 (591)
320 PRK10636 putative ABC transpor 99.6 1.1E-15 2.4E-20 186.7 12.6 134 657-794 12-210 (638)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.3E-15 2.8E-20 183.8 13.1 140 650-794 9-222 (552)
322 TIGR01842 type_I_sec_PrtD type 99.6 8.2E-15 1.8E-19 176.7 20.0 150 649-799 320-523 (544)
323 PRK13657 cyclic beta-1,2-gluca 99.6 1.6E-15 3.5E-20 184.6 13.1 152 649-802 338-542 (588)
324 COG0488 Uup ATPase components 99.6 1.3E-14 2.8E-19 170.9 19.7 143 649-795 325-501 (530)
325 PRK15064 ABC transporter ATP-b 99.6 1.4E-15 3E-20 182.7 11.8 133 658-794 331-499 (530)
326 PRK10790 putative multidrug tr 99.6 1.2E-14 2.6E-19 177.1 19.8 151 649-801 344-546 (592)
327 PRK11174 cysteine/glutathione 99.6 2.3E-15 5E-20 183.3 13.6 142 657-801 361-555 (588)
328 PRK10636 putative ABC transpor 99.6 1.4E-15 3.1E-20 185.7 11.6 134 657-794 323-491 (638)
329 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 1.1E-14 2.3E-19 180.4 19.4 153 649-805 455-660 (686)
330 PLN03073 ABC transporter F fam 99.6 2.1E-15 4.5E-20 185.0 12.6 141 650-794 513-688 (718)
331 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 2E-15 4.4E-20 187.7 12.3 153 649-805 481-687 (710)
332 TIGR01192 chvA glucan exporter 99.6 2.2E-15 4.9E-20 182.8 12.2 149 649-799 338-539 (585)
333 cd03278 ABC_SMC_barmotin Barmo 99.6 3.7E-15 8.1E-20 155.7 12.2 124 668-797 23-183 (197)
334 PRK10535 macrolide transporter 99.6 5.2E-15 1.1E-19 181.3 15.4 149 659-808 21-222 (648)
335 cd03270 ABC_UvrA_I The excisio 99.6 4.1E-15 8.9E-20 158.9 12.7 81 717-798 123-207 (226)
336 PRK11160 cysteine/glutathione 99.6 2.4E-15 5.2E-20 182.3 12.1 149 649-799 342-543 (574)
337 PRK11176 lipid transporter ATP 99.6 1.7E-14 3.7E-19 175.5 19.5 151 649-801 345-550 (582)
338 TIGR01194 cyc_pep_trnsptr cycl 99.6 4.4E-15 9.6E-20 179.2 14.1 154 649-802 341-543 (555)
339 COG4608 AppF ABC-type oligopep 99.6 5.8E-15 1.3E-19 156.5 13.2 170 659-835 26-209 (268)
340 COG4987 CydC ABC-type transpor 99.6 2.2E-15 4.8E-20 170.6 10.4 162 648-811 339-554 (573)
341 COG4674 Uncharacterized ABC-ty 99.6 1.5E-15 3.3E-20 151.3 8.0 137 657-795 16-211 (249)
342 TIGR02203 MsbA_lipidA lipid A 99.6 3.6E-15 7.7E-20 181.1 12.9 151 650-802 335-540 (571)
343 TIGR03375 type_I_sec_LssB type 99.6 3.5E-15 7.6E-20 185.0 12.5 152 649-802 467-672 (694)
344 TIGR00954 3a01203 Peroxysomal 99.6 3.4E-15 7.3E-20 183.1 12.1 144 650-797 456-646 (659)
345 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 3.2E-15 7E-20 180.3 11.7 133 658-794 334-504 (552)
346 PRK11147 ABC transporter ATPas 99.6 4.9E-15 1.1E-19 181.3 12.8 132 657-794 14-217 (635)
347 COG0488 Uup ATPase components 99.6 4E-15 8.7E-20 175.1 11.2 133 657-794 14-214 (530)
348 TIGR00958 3a01208 Conjugate Tr 99.6 4.9E-15 1.1E-19 183.6 12.5 154 649-806 482-690 (711)
349 TIGR01193 bacteriocin_ABC ABC- 99.6 5.1E-15 1.1E-19 184.0 12.6 152 649-803 477-682 (708)
350 PRK11819 putative ABC transpor 99.6 4.8E-15 1E-19 178.8 11.9 134 657-794 335-506 (556)
351 COG1123 ATPase components of v 99.6 7.6E-15 1.6E-19 169.7 12.5 154 658-814 303-512 (539)
352 TIGR02204 MsbA_rel ABC transpo 99.6 8.4E-15 1.8E-19 178.0 13.0 154 650-805 342-550 (576)
353 COG4107 PhnK ABC-type phosphon 99.6 1.9E-14 4.1E-19 140.6 12.6 139 657-796 17-218 (258)
354 TIGR01846 type_I_sec_HlyB type 99.6 8.2E-15 1.8E-19 181.6 12.9 155 649-805 459-667 (694)
355 TIGR02857 CydD thiol reductant 99.6 7.5E-15 1.6E-19 176.5 12.2 147 649-797 324-524 (529)
356 PRK10789 putative multidrug tr 99.6 7.2E-15 1.6E-19 178.0 12.1 147 651-799 319-519 (569)
357 TIGR00955 3a01204 The Eye Pigm 99.6 8.6E-15 1.9E-19 178.5 12.2 153 656-809 35-247 (617)
358 PLN03073 ABC transporter F fam 99.6 8.2E-15 1.8E-19 179.8 11.4 147 648-799 180-411 (718)
359 TIGR02868 CydC thiol reductant 99.6 1.4E-14 3E-19 174.3 12.7 141 648-790 337-529 (529)
360 PRK11147 ABC transporter ATPas 99.6 8.6E-15 1.9E-19 179.2 10.9 134 657-794 330-501 (635)
361 COG1101 PhnK ABC-type uncharac 99.6 7.7E-15 1.7E-19 148.5 8.6 137 657-793 17-212 (263)
362 PLN03140 ABC transporter G fam 99.6 1.8E-14 4E-19 188.2 14.6 144 658-802 892-1093(1470)
363 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.5E-14 3.3E-19 152.8 10.7 147 643-798 6-198 (212)
364 COG4618 ArpD ABC-type protease 99.5 1.4E-13 3.1E-18 154.7 18.9 145 656-801 346-543 (580)
365 KOG0059 Lipid exporter ABCA1 a 99.5 1.4E-14 3.1E-19 182.3 10.4 156 661-817 580-786 (885)
366 TIGR00956 3a01205 Pleiotropic 99.5 3.6E-14 7.8E-19 186.0 14.3 141 658-799 775-973 (1394)
367 COG4148 ModC ABC-type molybdat 99.5 2.5E-14 5.3E-19 149.9 9.0 140 669-809 25-209 (352)
368 cd03272 ABC_SMC3_euk Eukaryoti 99.5 8.8E-14 1.9E-18 150.3 13.5 72 726-799 154-230 (243)
369 COG1132 MdlB ABC-type multidru 99.5 5.5E-14 1.2E-18 170.4 12.9 155 649-806 332-540 (567)
370 KOG0927 Predicted transporter 99.5 2.9E-14 6.3E-19 161.1 8.8 152 649-805 393-582 (614)
371 KOG0055 Multidrug/pheromone ex 99.5 4.7E-14 1E-18 174.2 11.0 159 649-810 354-568 (1228)
372 COG4136 ABC-type uncharacteriz 99.5 8.5E-14 1.8E-18 133.1 10.2 138 657-794 13-199 (213)
373 PTZ00265 multidrug resistance 99.5 7.5E-14 1.6E-18 183.3 13.3 78 726-804 575-654 (1466)
374 cd03279 ABC_sbcCD SbcCD and ot 99.5 8.6E-14 1.9E-18 147.4 10.1 128 668-796 28-199 (213)
375 PTZ00243 ABC transporter; Prov 99.5 1.2E-13 2.6E-18 182.8 13.7 142 657-799 671-851 (1560)
376 cd03271 ABC_UvrA_II The excisi 99.5 3.7E-13 8.1E-18 145.8 14.4 81 716-797 154-239 (261)
377 COG4778 PhnL ABC-type phosphon 99.5 5.9E-14 1.3E-18 136.9 7.2 134 660-794 25-216 (235)
378 TIGR01271 CFTR_protein cystic 99.5 1.5E-13 3.2E-18 181.8 12.0 147 659-806 439-624 (1490)
379 TIGR00956 3a01205 Pleiotropic 99.5 2.4E-13 5.2E-18 178.3 13.1 147 658-805 73-287 (1394)
380 PTZ00265 multidrug resistance 99.4 2.8E-13 6E-18 178.0 12.4 154 648-802 1168-1431(1466)
381 PLN03140 ABC transporter G fam 99.4 2E-13 4.4E-18 178.5 10.8 150 658-807 177-416 (1470)
382 PLN03232 ABC transporter C fam 99.4 3.5E-13 7.7E-18 178.4 12.2 155 649-805 1238-1445(1495)
383 KOG0066 eIF2-interacting prote 99.4 2.6E-13 5.6E-18 148.5 8.9 136 647-794 588-765 (807)
384 cd03276 ABC_SMC6_euk Eukaryoti 99.4 9.1E-13 2E-17 137.8 12.3 133 664-796 16-182 (198)
385 COG4138 BtuD ABC-type cobalami 99.4 1.1E-13 2.4E-18 135.5 4.9 125 667-793 24-195 (248)
386 cd03240 ABC_Rad50 The catalyti 99.4 3.4E-13 7.5E-18 141.7 9.0 134 663-797 16-190 (204)
387 TIGR00957 MRP_assoc_pro multi 99.4 3.5E-13 7.6E-18 178.8 11.1 149 651-799 642-831 (1522)
388 PLN03232 ABC transporter C fam 99.4 2.8E-12 6E-17 170.1 19.2 152 650-802 619-812 (1495)
389 PLN03130 ABC transporter C fam 99.4 6E-13 1.3E-17 176.5 12.8 158 649-808 1241-1451(1622)
390 KOG0062 ATPase component of AB 99.4 3.6E-13 7.8E-18 151.6 8.6 130 657-794 91-259 (582)
391 KOG0058 Peptide exporter, ABC 99.4 6.2E-12 1.3E-16 147.9 19.2 148 649-798 469-671 (716)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.4 9.1E-13 2E-17 142.8 11.5 68 729-797 154-226 (247)
393 PLN03130 ABC transporter C fam 99.4 5.2E-12 1.1E-16 167.7 20.5 152 650-802 619-812 (1622)
394 cd03273 ABC_SMC2_euk Eukaryoti 99.4 1.4E-12 3.1E-17 141.7 12.4 72 726-799 162-238 (251)
395 TIGR01271 CFTR_protein cystic 99.4 9.2E-13 2E-17 174.3 13.1 149 649-799 1221-1421(1490)
396 PTZ00243 ABC transporter; Prov 99.4 8.2E-13 1.8E-17 175.0 12.6 156 649-806 1312-1521(1560)
397 KOG0061 Transporter, ABC super 99.4 1.1E-12 2.4E-17 158.7 12.7 141 658-799 42-241 (613)
398 TIGR00957 MRP_assoc_pro multi 99.4 8.9E-13 1.9E-17 175.0 12.3 152 649-802 1288-1492(1522)
399 COG4172 ABC-type uncharacteriz 99.3 4.9E-12 1.1E-16 138.6 12.6 142 657-798 21-227 (534)
400 PF00005 ABC_tran: ABC transpo 99.3 1.5E-12 3.3E-17 127.6 7.6 97 662-758 1-137 (137)
401 KOG0056 Heavy metal exporter H 99.3 2.4E-12 5.2E-17 143.1 9.2 147 649-797 541-740 (790)
402 cd03239 ABC_SMC_head The struc 99.3 3.4E-12 7.3E-17 131.2 9.5 124 670-798 24-166 (178)
403 COG0249 MutS Mismatch repair A 99.3 2.3E-11 5E-16 149.9 17.9 304 288-648 260-592 (843)
404 COG4615 PvdE ABC-type sideroph 99.3 2.5E-11 5.3E-16 132.6 15.0 161 648-808 325-527 (546)
405 COG4172 ABC-type uncharacteriz 99.3 1E-11 2.2E-16 136.2 11.5 135 659-794 300-491 (534)
406 TIGR01070 mutS1 DNA mismatch r 99.3 3.2E-11 6.9E-16 150.2 17.1 302 288-645 249-574 (840)
407 KOG0055 Multidrug/pheromone ex 99.3 1.9E-11 4.1E-16 151.5 14.4 161 648-810 990-1205(1228)
408 cd03277 ABC_SMC5_euk Eukaryoti 99.3 1.3E-11 2.9E-16 130.5 10.9 67 725-792 121-194 (213)
409 PRK05399 DNA mismatch repair p 99.3 7.4E-11 1.6E-15 147.8 18.0 304 288-646 263-589 (854)
410 KOG0927 Predicted transporter 99.2 1.9E-11 4.1E-16 138.7 10.3 133 658-794 87-283 (614)
411 COG1245 Predicted ATPase, RNas 99.2 2E-11 4.4E-16 135.6 9.6 129 668-796 367-522 (591)
412 COG4178 ABC-type uncharacteriz 99.2 2.5E-10 5.4E-15 134.3 17.4 153 640-797 390-581 (604)
413 PF05192 MutS_III: MutS domain 99.2 1.5E-10 3.1E-15 121.4 13.6 96 321-434 1-102 (204)
414 COG1245 Predicted ATPase, RNas 99.2 4.7E-11 1E-15 132.7 9.5 137 668-805 100-288 (591)
415 COG2401 ABC-type ATPase fused 99.2 9.7E-11 2.1E-15 128.6 11.0 138 658-795 395-573 (593)
416 TIGR00630 uvra excinuclease AB 99.2 1.7E-10 3.7E-15 144.0 14.4 80 717-797 814-898 (924)
417 PRK00635 excinuclease ABC subu 99.2 1.1E-10 2.3E-15 152.0 12.0 83 716-799 794-881 (1809)
418 PRK00349 uvrA excinuclease ABC 99.1 1.9E-10 4.1E-15 143.9 13.5 80 717-797 816-900 (943)
419 KOG0065 Pleiotropic drug resis 99.1 3.9E-11 8.4E-16 148.7 5.6 133 657-791 802-991 (1391)
420 KOG0054 Multidrug resistance-a 99.1 1.2E-09 2.6E-14 138.9 16.7 162 642-805 518-718 (1381)
421 KOG2355 Predicted ABC-type tra 99.1 3.7E-10 7.9E-15 113.8 9.6 154 643-799 14-218 (291)
422 COG4167 SapF ABC-type antimicr 99.1 7.7E-10 1.7E-14 109.5 11.1 148 661-810 28-228 (267)
423 COG5265 ATM1 ABC-type transpor 99.0 4.7E-10 1E-14 124.2 8.9 153 650-806 267-474 (497)
424 cd03241 ABC_RecN RecN ATPase i 99.0 8E-10 1.7E-14 121.8 8.5 67 730-798 170-241 (276)
425 KOG0060 Long-chain acyl-CoA tr 99.0 3.3E-08 7.2E-13 113.6 19.7 134 658-795 447-632 (659)
426 KOG0064 Peroxisomal long-chain 98.9 1.3E-08 2.8E-13 115.2 15.9 136 656-795 492-674 (728)
427 COG3910 Predicted ATPase [Gene 98.9 4.1E-09 8.8E-14 105.2 10.1 64 731-795 130-193 (233)
428 KOG0219 Mismatch repair ATPase 98.9 8.8E-10 1.9E-14 129.4 5.5 355 306-704 313-690 (902)
429 KOG0054 Multidrug resistance-a 98.9 7.7E-09 1.7E-13 131.7 11.9 136 657-794 1151-1338(1381)
430 COG1129 MglA ABC-type sugar tr 98.8 2.3E-08 5E-13 115.7 12.9 141 661-802 274-474 (500)
431 COG0178 UvrA Excinuclease ATPa 98.8 2.5E-08 5.4E-13 118.4 12.5 75 724-799 816-894 (935)
432 KOG0062 ATPase component of AB 98.8 1.3E-08 2.8E-13 115.4 8.6 139 653-795 370-544 (582)
433 COG4170 SapD ABC-type antimicr 98.8 1.3E-08 2.7E-13 103.0 7.0 137 657-793 18-222 (330)
434 PF02463 SMC_N: RecF/RecN/SMC 98.7 7.9E-08 1.7E-12 102.3 12.9 67 730-798 136-207 (220)
435 KOG0066 eIF2-interacting prote 98.7 1.1E-08 2.4E-13 112.7 5.1 134 657-794 275-473 (807)
436 PRK00635 excinuclease ABC subu 98.7 6.7E-08 1.5E-12 126.5 10.9 76 723-799 1692-1771(1809)
437 TIGR02858 spore_III_AA stage I 98.6 1E-07 2.2E-12 104.1 9.4 115 669-795 112-234 (270)
438 PRK08533 flagellar accessory p 98.5 4.1E-07 8.9E-12 97.5 10.8 121 668-791 24-163 (230)
439 cd03242 ABC_RecF RecF is a rec 98.5 2.2E-07 4.7E-12 102.2 8.6 58 730-792 183-250 (270)
440 cd01124 KaiC KaiC is a circadi 98.4 1.3E-06 2.9E-11 90.1 10.1 121 670-792 1-142 (187)
441 PF13304 AAA_21: AAA domain; P 98.4 8.2E-07 1.8E-11 94.9 8.2 63 730-793 236-302 (303)
442 cd01120 RecA-like_NTPases RecA 98.3 3.1E-06 6.7E-11 84.6 11.4 123 670-792 1-139 (165)
443 TIGR00630 uvra excinuclease AB 98.3 1.4E-06 3.1E-11 109.4 10.4 84 715-799 471-558 (924)
444 PRK00349 uvrA excinuclease ABC 98.3 1.1E-06 2.4E-11 110.5 8.9 85 714-799 472-560 (943)
445 PRK13695 putative NTPase; Prov 98.3 2.6E-06 5.6E-11 87.3 8.7 50 745-797 94-143 (174)
446 KOG0063 RNAse L inhibitor, ABC 98.2 1.9E-06 4.1E-11 95.9 7.2 128 668-795 367-522 (592)
447 KOG0218 Mismatch repair MSH3 [ 98.2 0.00011 2.4E-09 85.9 19.5 96 288-386 458-577 (1070)
448 smart00533 MUTSd DNA-binding d 98.2 4.8E-06 1E-10 93.2 8.5 83 334-434 2-84 (308)
449 PRK06067 flagellar accessory p 98.1 1.1E-05 2.3E-10 86.8 10.3 125 666-792 23-167 (234)
450 smart00382 AAA ATPases associa 98.1 2.2E-05 4.9E-10 75.4 11.2 115 669-789 3-125 (148)
451 PF05192 MutS_III: MutS domain 98.1 4.6E-06 1E-10 87.3 6.0 77 305-384 20-109 (204)
452 cd01131 PilT Pilus retraction 98.0 1.9E-05 4.2E-10 82.7 9.0 112 669-795 2-114 (198)
453 COG3845 ABC-type uncharacteriz 97.9 5.8E-05 1.3E-09 86.4 11.5 146 657-803 269-477 (501)
454 PRK07721 fliI flagellum-specif 97.9 4.8E-05 1E-09 88.6 10.7 144 658-808 145-333 (438)
455 TIGR00634 recN DNA repair prot 97.9 6.9E-05 1.5E-09 91.0 12.4 116 729-854 439-562 (563)
456 PRK10869 recombination and rep 97.8 9.8E-05 2.1E-09 89.1 11.6 115 730-854 430-552 (553)
457 KOG0065 Pleiotropic drug resis 97.8 2.9E-05 6.4E-10 97.7 6.0 139 659-797 128-330 (1391)
458 TIGR02788 VirB11 P-type DNA tr 97.7 3.2E-05 7E-10 86.7 5.7 115 668-796 144-259 (308)
459 KOG0063 RNAse L inhibitor, ABC 97.7 3.4E-05 7.3E-10 86.2 4.8 68 730-798 213-281 (592)
460 PRK06793 fliI flagellum-specif 97.7 9.7E-05 2.1E-09 85.5 7.9 135 658-796 143-292 (432)
461 cd01125 repA Hexameric Replica 97.6 0.00031 6.6E-09 75.9 11.3 46 745-791 109-160 (239)
462 cd00820 PEPCK_HprK Phosphoenol 97.6 6.2E-05 1.3E-09 70.3 4.1 31 659-689 2-36 (107)
463 TIGR01420 pilT_fam pilus retra 97.6 0.0002 4.2E-09 81.6 8.8 112 668-794 122-234 (343)
464 cd00009 AAA The AAA+ (ATPases 97.6 0.00032 6.9E-09 68.1 9.0 107 669-792 20-132 (151)
465 PRK04296 thymidine kinase; Pro 97.6 0.00044 9.6E-09 72.0 10.6 114 668-791 2-117 (190)
466 PRK14721 flhF flagellar biosyn 97.5 0.00084 1.8E-08 77.7 12.9 88 668-764 191-284 (420)
467 TIGR00618 sbcc exonuclease Sbc 97.5 0.0002 4.4E-09 93.2 8.2 73 723-796 943-1026(1042)
468 cd02023 UMPK Uridine monophosp 97.4 9.8E-05 2.1E-09 77.3 3.7 23 670-692 1-23 (198)
469 PTZ00132 GTP-binding nuclear p 97.4 0.00039 8.5E-09 73.7 8.3 33 745-778 168-205 (215)
470 PF13555 AAA_29: P-loop contai 97.4 0.00014 3.1E-09 60.7 3.8 25 668-692 23-47 (62)
471 PRK09183 transposase/IS protei 97.4 0.0005 1.1E-08 75.2 8.9 99 668-789 102-205 (259)
472 TIGR00606 rad50 rad50. This fa 97.4 0.00058 1.2E-08 90.9 10.7 73 723-795 1192-1275(1311)
473 cd01130 VirB11-like_ATPase Typ 97.4 0.00022 4.8E-09 73.9 5.4 25 668-692 25-49 (186)
474 PRK11889 flhF flagellar biosyn 97.3 0.0027 5.9E-08 72.2 13.9 90 669-762 242-335 (436)
475 PRK01156 chromosome segregatio 97.3 0.00047 1E-08 88.7 9.1 74 726-799 797-879 (895)
476 PRK03918 chromosome segregatio 97.3 0.0004 8.6E-09 89.3 8.3 72 726-798 784-862 (880)
477 PRK10246 exonuclease subunit S 97.3 0.00036 7.8E-09 90.6 7.9 69 726-795 945-1022(1047)
478 PHA02562 46 endonuclease subun 97.3 0.00037 8E-09 84.9 7.5 68 727-797 465-544 (562)
479 PF05188 MutS_II: MutS domain 97.3 0.00023 5E-09 69.5 4.5 40 177-220 18-57 (137)
480 PRK13830 conjugal transfer pro 97.2 0.003 6.6E-08 79.9 14.7 49 745-794 650-699 (818)
481 PRK06893 DNA replication initi 97.2 0.0013 2.7E-08 70.7 9.5 93 669-790 40-134 (229)
482 cd01121 Sms Sms (bacterial rad 97.2 0.0022 4.9E-08 73.5 11.8 118 668-790 82-210 (372)
483 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0036 7.8E-08 67.0 12.8 125 667-791 19-167 (229)
484 PF00004 AAA: ATPase family as 97.1 0.001 2.2E-08 64.0 7.1 101 671-793 1-115 (132)
485 PRK06731 flhF flagellar biosyn 97.1 0.0091 2E-07 65.5 14.7 96 668-764 75-172 (270)
486 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0029 6.3E-08 67.9 10.7 126 665-790 16-170 (235)
487 TIGR00416 sms DNA repair prote 97.1 0.0029 6.2E-08 74.7 11.3 119 668-791 94-223 (454)
488 PRK14722 flhF flagellar biosyn 97.1 0.0013 2.8E-08 75.1 8.0 85 668-759 137-227 (374)
489 PRK12723 flagellar biosynthesi 97.1 0.0073 1.6E-07 69.5 14.2 86 668-760 174-267 (388)
490 PRK14723 flhF flagellar biosyn 97.0 0.002 4.3E-08 79.3 9.7 88 668-762 185-279 (767)
491 COG3854 SpoIIIAA ncharacterize 97.0 0.0018 3.9E-08 67.5 7.8 106 671-795 140-258 (308)
492 TIGR03015 pepcterm_ATPase puta 97.0 0.003 6.5E-08 69.2 10.3 24 669-692 44-67 (269)
493 TIGR02168 SMC_prok_B chromosom 97.0 0.00084 1.8E-08 88.9 7.1 71 727-799 1086-1161(1179)
494 PRK06921 hypothetical protein; 97.0 0.0022 4.7E-08 70.4 9.1 98 670-789 119-224 (266)
495 PRK06995 flhF flagellar biosyn 97.0 0.0011 2.3E-08 78.1 6.9 85 668-759 256-346 (484)
496 cd01393 recA_like RecA is a b 97.0 0.0054 1.2E-07 65.4 11.5 125 665-790 16-169 (226)
497 PF13401 AAA_22: AAA domain; P 97.0 0.0014 3.1E-08 63.2 6.4 112 669-789 5-125 (131)
498 PRK11823 DNA repair protein Ra 97.0 0.0039 8.5E-08 73.5 11.2 117 668-789 80-207 (446)
499 PRK12727 flagellar biosynthesi 97.0 0.0043 9.3E-08 73.2 11.2 88 668-759 350-440 (559)
500 cd01128 rho_factor Transcripti 97.0 0.0011 2.4E-08 71.8 6.0 25 668-692 16-40 (249)
No 1
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-116 Score=1067.97 Aligned_cols=738 Identities=25% Similarity=0.327 Sum_probs=626.7
Q ss_pred CcccHHH---HHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCCCccccCcccHHHHHHHHHHCCce
Q 002090 42 GTLNWEM---LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYS 118 (968)
Q Consensus 42 ~~l~~~~---~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~g~~~~~~pmaGvP~h~~~~yl~~Lv~~G~k 118 (968)
.++|||| |+||++||||+||||||||||+||+||+++|++|+|++|+ |.+ +||||||+|+++.||++||++|||
T Consensus 4 ~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~--r~~-~pm~gvP~h~~~~yl~~li~~g~k 80 (843)
T COG0249 4 AKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTK--RGN-IPMAGVPYHALDYYLAKLIELGYK 80 (843)
T ss_pred ccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeec--CCC-CcCCCCccccHHHHHHHHHhCCCe
Confidence 3678886 9999999999999999999999999999999999999999 433 999999999999999999999999
Q ss_pred EEEEeccCCcccCCCceeEeEeeeecCCCccccccccCCCCCCCCCCcc-----EEEEEcCCceEEEEEeccccceeEee
Q 002090 119 VCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP-----VIGVSRSAKGYCIISILETMKTYSLE 193 (968)
Q Consensus 119 VaI~EQ~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~-----~~gi~~~~~~~~~~~~~~~~~~~~v~ 193 (968)
||||||+++|+.+|++|+|.|+||+||||.+++.++.+..+ ||++++. .+|+ +|+|+|||+|. +.
T Consensus 81 VAiceQ~e~~~~~k~~v~R~v~rv~TpGt~~d~~~l~~~~~-n~l~a~~~~~~~~~gl-----a~~dlstGef~----~~ 150 (843)
T COG0249 81 VAICEQLEDPAEAKGVVERKVVRVVTPGTLTDEALLSDREN-NYLAALAIDRDGKVGL-----AFIDLSTGEFF----VS 150 (843)
T ss_pred EEEEEcccChhhhcCcceeEEEEEECCCeeecccccccccc-ceEEEEEecCCCEEEE-----EEEEcccCeEE----EE
Confidence 99999999999999999999999999999999999988877 8888764 5888 89999998888 88
Q ss_pred cCCCHHHHHHHHHcCCcceEEEcCCCccCCCCCccccccCCCCccccccccccccc-cCCchHHHHHHH---Hh--HhcC
Q 002090 194 DGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW-FEGDPVIELLLK---VK--ELYG 267 (968)
Q Consensus 194 ~~~~~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~---v~--~~~g 267 (968)
++. .+.+.++|.+++|+||+++.++.+.. ..+. .....+++.+.| |+...+...+.. +. ++||
T Consensus 151 ~~~-~~~l~~~l~r~~p~Eil~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~l~~~~ 219 (843)
T COG0249 151 EFE-REKLLSELKRLQPKELLLSESLLSST-----LAEI-----QKGLFVVRLPASFFDEDDAEEILSEYFGVRDLDGFG 219 (843)
T ss_pred Eee-HHHHHHHHHhCCCcEEEeccccCchh-----hhhh-----hhceeeeecchhhcCccHHHHHHHHHhCcccccccc
Confidence 887 88899999999999999998864221 0100 001134566777 665554444442 11 2234
Q ss_pred CCCcccccccccccCCcccc--e-eechhhhcccCCCCCCCccceEecCCCccCCCHHHHHhhccCCCc------chHHH
Q 002090 268 LENEVTFRNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA------YEIAS 338 (968)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~--L-yLd~~Tq~~ll~~~~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~------~sl~~ 338 (968)
+...+ ....+++ + |+ ..||+..+++ ..-+..+....+|.||..|+|||||+++. |||++
T Consensus 220 ~~~~~--------~~~~a~~~ll~Y~-~~t~~~~l~~---~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~ 287 (843)
T COG0249 220 LISTP--------LALSAAGALLSYL-KDTQKTFLPH---IQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKGSLFW 287 (843)
T ss_pred cccch--------HHHHHHHHHHHHH-HHhhhccccc---cccceeeccCcEEEEcHHHHhcccccccCCCCCCCCcHHH
Confidence 43322 4556666 4 99 8999988888 67778878899999999999999999997 59999
Q ss_pred HHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHH
Q 002090 339 TIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLV 418 (968)
Q Consensus 339 ~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~ 418 (968)
.+|+|.|+||. |+|+.||.+| ++|..+|..||++|+.|.+++.+++.|+..|+.++ |++|++
T Consensus 288 ~ld~t~T~mG~--------RlL~~wl~~P---L~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~-------DleRl~ 349 (843)
T COG0249 288 LLDRTVTPMGS--------RLLKRWLLQP---LLDKEEIEERLDAVEELKDNPELREKLREMLKKVP-------DLERLL 349 (843)
T ss_pred HhccCCCchhH--------HHHHHHhhCc---ccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCc-------CHHHHH
Confidence 99999999999 9999999999 99999999999999999999999999999999998 999999
Q ss_pred HHHHHHhhchhhhhhccC----------------CchhhhcccC---CCch--hHHhhcc------hhh--hhhhhhccc
Q 002090 419 EECRLASVRIGEMISLDG----------------ESDQKICSYD---NIPS--EFFEDME------STW--KGRVKRIHI 469 (968)
Q Consensus 419 ~~~~~~~~~i~~~i~l~~----------------e~~~~~~~~~---~I~~--~~~~~ld------~~~--~g~v~~~~~ 469 (968)
+|+..+..+++|+..+-+ .++....... .++. ++...++ .++ +..+-+...
T Consensus 350 ~Rl~~~~~~~rDl~~l~~~l~~~~~i~~~l~~~~~~~~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~ 429 (843)
T COG0249 350 SRLSLGRASPRDLLRLRDSLEKIPEIFKLLSSLKSESDLLLLLEDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGY 429 (843)
T ss_pred HHHHcCCCChhhHHHHHHHHHHHHHHHHHHhccccchhhhHHhhhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcch
Confidence 999999999999987510 0110111111 1111 1111111 011 111233445
Q ss_pred chhHHHHHHHHHHHHHHhhcCch-hhhhhhcccccCCCCCChhhhhhhcccceeeeccccccccccCCCCcccccccccc
Q 002090 470 EPEIAEVEMAAEALSLAVTEDFL-PIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPA 548 (968)
Q Consensus 470 ~~~l~el~~~~~~L~~aI~~d~~-p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~ 548 (968)
...+++++.+.+. .++|+ .++.+++. ++|+.+++++|++++| ||++++ +.+.+.++.+
T Consensus 430 ~~eLd~lr~~~~~-----~~~~i~~le~~~r~---~~gi~slki~~n~v~G------y~ievt-------~~~~~~~p~~ 488 (843)
T COG0249 430 NIELDELRDLLNN-----AKEWIAKLELEERE---RTGIKSLKIKYNKVYG------YYIEVT-------KSNAKLVPDD 488 (843)
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHHH---hcCCchhhhhhhccce------eEEEec-------hhccccCchH
Confidence 5667778888777 66666 77777777 8899999999999999 888886 2334445555
Q ss_pred cccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcc
Q 002090 549 VDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWV 628 (968)
Q Consensus 549 ~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~ 628 (968)
|.+.++.++.+||+|+++++.++++.+++.++...+.+++.++.+.+..+++.|..++..++.+|++.++|+.|...+||
T Consensus 489 ~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~ 568 (843)
T COG0249 489 YIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYV 568 (843)
T ss_pred HHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 66777788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccCcceeEEc-CCCccccccCCCceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC
Q 002090 629 FPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 704 (968)
Q Consensus 629 ~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~ 704 (968)
+|++++. . . +.++ |+||+.-......+|+||+++ +++++||||||||||||||++|.+++|||+|+||||+
T Consensus 569 rP~~~~~---~-~-l~i~~gRHPvvE~~~~~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~ 643 (843)
T COG0249 569 RPEFVDS---N-D-LEIKEGRHPVVEAVLDNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAE 643 (843)
T ss_pred CceecCC---C-C-EEEEecCcchhhhhccCCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHH
Confidence 9999985 1 1 4443 455554333333399999999 4899999999999999999999999999999999999
Q ss_pred cCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEE
Q 002090 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLG 783 (968)
Q Consensus 705 ~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~v 783 (968)
.+.++.+|+||+|+|..|++..+.|||++||.+++.|+..|++.|||||||.|+||++.||.+|+|++++++++. ++.+
T Consensus 644 ~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~t 723 (843)
T COG0249 644 KARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRT 723 (843)
T ss_pred HccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995 9999
Q ss_pred EEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 002090 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 859 (968)
Q Consensus 784 l~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~~ 859 (968)
||+|||+|++++......+.|.||...+.++++.|+|++.+|.+++|||++||+++|+|.+||+||++++.++|..
T Consensus 724 LFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~ 799 (843)
T COG0249 724 LFATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKE 799 (843)
T ss_pred EEeccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999988999999999999999999999999999999999999999999999999999999988754
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=3.5e-114 Score=1059.99 Aligned_cols=726 Identities=24% Similarity=0.286 Sum_probs=593.7
Q ss_pred ccHH---HHHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCC-CC-CCCCCCccccCcccHHHHHHHHHHCCce
Q 002090 44 LNWE---MLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GL-RPESIPKAGCPVVNLRQTLDDLTRNGYS 118 (968)
Q Consensus 44 l~~~---~~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~-g~-~~~~~pmaGvP~h~~~~yl~~Lv~~G~k 118 (968)
+||| ||++|++||||||||||||||||||+||+++|++|||+||+ ++ .++++||||||+|+++.|++|||++|||
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~k 80 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGES 80 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 4677 49999999999999999999999999999999999999998 22 2346999999999999999999999999
Q ss_pred EEEEeccCCcccCCCceeEeEeeeecCCCccccccccCCCCCCCCCCcc----EEEEEcCCceEEEEEeccccceeEeec
Q 002090 119 VCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP----VIGVSRSAKGYCIISILETMKTYSLED 194 (968)
Q Consensus 119 VaI~EQ~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~----~~gi~~~~~~~~~~~~~~~~~~~~v~~ 194 (968)
||||||+|+|+.+|++|+|+|++||||||.+++++++++.+ ||++++. .+|+ +|+|+|||+|. +++
T Consensus 81 Vai~eQ~e~~~~~kg~v~Rev~ri~TpGT~~~~~~l~~~~~-nyl~ai~~~~~~~gl-----a~~D~sTG~~~----~~~ 150 (840)
T TIGR01070 81 VAICEQIEDPKTAKGPVEREVVQLITPGTVSDEALLPERQD-NLLAAIAQESNGFGL-----ATLDLTTGEFK----VTE 150 (840)
T ss_pred EEEEEecCCchhcCCceeeEEEEEECCCcccccccccCCCC-ceEEEEEeCCCeEEE-----EEEEccccEEE----EEE
Confidence 99999999999999999999999999999999998888888 8887764 4777 88888888877 888
Q ss_pred CCCHHHHHHHHHcCCcceEEEcCCCccCCCCCccccccCCCCccccccccccccccCCchHHHHHHHHhHhcCCCCcccc
Q 002090 195 GLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTF 274 (968)
Q Consensus 195 ~~~~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~ll~~v~~~~gl~~~~~~ 274 (968)
+.+.+.+.++|.+++|+||+++.+.... .. . ..+ .|..+.+... +.+.||......|
T Consensus 151 ~~d~~~l~~~l~~~~P~Eil~~~~~~~~------~~---------~-~~~----~f~~~~~~~~---l~~~f~~~~l~~~ 207 (840)
T TIGR01070 151 LADKETLYAELQRLNPAEVLLAEDLSEM------EA---------I-ELR----EFRKDTAVMS---LEAQFGTEDLGGL 207 (840)
T ss_pred ecCHHHHHHHHhccCCeEEEEcCCCChH------HH---------H-HhH----hcchhHHHHH---HHHhcCccchhhc
Confidence 8766779999999999999998764110 00 0 000 1111111111 1223332221111
Q ss_pred cccccccCCcccc--e-eechhhhcccCCCCCCCccceEecCCCccCCCHHHHHhhccCCCc-----chHHHHHHHHHhh
Q 002090 275 RNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-----YEIASTIQAICKL 346 (968)
Q Consensus 275 ~~~~~~~~~~~~~--L-yLd~~Tq~~ll~~~~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~-----~sl~~~I~~~~t~ 346 (968)
..........+++ + || ..||.+.+.+ ...+..+..+++|.||..|+++|+|+++. +||++.+|+|+|+
T Consensus 208 ~~~~~~~~~~a~g~ll~Yl-~~~~~~~~~~---~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~~~~gSL~~~ld~t~T~ 283 (840)
T TIGR01070 208 GLRNAPLGLTAAGCLLQYA-KRTQRTALPH---LQPVRLYELQDFMQLDAATRRNLELTENLRGGKQNTLFSVLDETKTA 283 (840)
T ss_pred CCCCCHHHHHHHHHHHHHH-HHhChhhhhh---CCCcEEECCCCEEEeCHHHHHhccCCccCCCCCCCcHHHHHhhcCCH
Confidence 0000013445555 4 99 7788766666 56677778899999999999999999975 5999999999999
Q ss_pred hhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhh
Q 002090 347 MSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASV 426 (968)
Q Consensus 347 ~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~ 426 (968)
||+ |+|++||.+| ++|...|++||++|++|.+++.++..++..++.++ |++|+++++.....
T Consensus 284 ~G~--------RlLr~wl~~P---l~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~-------Dlerll~ri~~~~~ 345 (840)
T TIGR01070 284 MGS--------RLLKRWLHRP---LRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVG-------DLERLAARVALGNA 345 (840)
T ss_pred HHH--------HHHHHHhhCC---CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCc-------CHHHHHHHHHcCCC
Confidence 999 9999999999 99999999999999999999999999999999888 99999999998888
Q ss_pred chhhhhhccCCchhhhcccCCCch--hHHhhcchhhh--------------------------------hhhhhcccchh
Q 002090 427 RIGEMISLDGESDQKICSYDNIPS--EFFEDMESTWK--------------------------------GRVKRIHIEPE 472 (968)
Q Consensus 427 ~i~~~i~l~~e~~~~~~~~~~I~~--~~~~~ld~~~~--------------------------------g~v~~~~~~~~ 472 (968)
.++|++.+ ...+..++. .++...+++.. +.| +....+.
T Consensus 346 ~~~dl~~l-------~~~l~~~~~l~~~l~~~~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I-~~g~~~~ 417 (840)
T TIGR01070 346 RPRDLARL-------RTSLEQLPELRALLEELEGPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLI-REGYDEE 417 (840)
T ss_pred CHHHHHHH-------HHHHHHHHHHHHHHHhcCcHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCee-CCCCCHH
Confidence 88888875 122211111 11111100000 111 1223445
Q ss_pred HHHHHHHHHHHHHHhhcCch-hhhhhhcccccCCCCCChhhhhhhcccceeeeccccccccccCCCCcccccc-cccccc
Q 002090 473 IAEVEMAAEALSLAVTEDFL-PIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVD 550 (968)
Q Consensus 473 l~el~~~~~~L~~aI~~d~~-p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~-l~~~~s 550 (968)
++++++..+. .++++ .++.+++. ++|+.+.++.|++.+| |+++++. .....+|+ +++.+
T Consensus 418 Ld~lr~~~~~-----~~~~l~~l~~~~~~---~~~i~~lk~~~~~~~g------y~iev~~----~~~~~vp~~~i~~~- 478 (840)
T TIGR01070 418 LDELRAASRE-----GTDYLARLEARERE---RTGIPTLKVGYNAVFG------YYIEVTR----GQLHLVPAHYRRRQ- 478 (840)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHH---HcCCCceEEEEecCce------EEEEEeh----hhhhcCCcceEEEE-
Confidence 5566666665 33333 45555555 6677778888887777 7877762 23344554 44444
Q ss_pred cCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcccC
Q 002090 551 SKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFP 630 (968)
Q Consensus 551 ~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~~P 630 (968)
+..+.++|+|+++.+.++++.+++.++.+.+.+++.++...+..+.+.+..+...++.+|+++|+|..|..++||+|
T Consensus 479 ---s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P 555 (840)
T TIGR01070 479 ---TLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRP 555 (840)
T ss_pred ---eccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCc
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceeEEc-CCCccccccCCCceeeeeEeec---eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcC
Q 002090 631 ALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA 706 (968)
Q Consensus 631 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~lg---~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~ 706 (968)
++++. ..+.++ |+||+.-....+.+|+||+.++ ++++|||||||||||+||++|.+++|||+|+||||+.+
T Consensus 556 ~~~~~-----~~i~i~~~RHP~le~~~~~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a 630 (840)
T TIGR01070 556 RFGDD-----PQLRIREGRHPVVEQVLRTPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESA 630 (840)
T ss_pred eecCC-----CcEEEEeeECHHHHhccCCCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchhe
Confidence 99874 235443 5666553222357999999993 59999999999999999999999999999999999999
Q ss_pred CcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEE
Q 002090 707 SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIV 785 (968)
Q Consensus 707 ~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~ 785 (968)
.++++|+||+++|..|++..+.|||+.||.+++.|+..+++++|+|+||+|+|||+.+|.+|++++++++.+ .++.++|
T Consensus 631 ~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~ 710 (840)
T TIGR01070 631 ELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLF 710 (840)
T ss_pred EeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred eccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 002090 786 STHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 859 (968)
Q Consensus 786 ~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~~ 859 (968)
+||++++..+....+++.|.||.+...++++.|+|++.+|.+++|||++||+++|+|++||+||++++..++..
T Consensus 711 ~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 711 ATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEAR 784 (840)
T ss_pred EcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 99999999998888899999999988889999999999999999999999999999999999999999998743
No 3
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=5.4e-110 Score=1029.35 Aligned_cols=737 Identities=25% Similarity=0.315 Sum_probs=598.0
Q ss_pred cCcccHHH---HHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCC-CC-CCCCCCccccCcccHHHHHHHHHHC
Q 002090 41 EGTLNWEM---LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GL-RPESIPKAGCPVVNLRQTLDDLTRN 115 (968)
Q Consensus 41 ~~~l~~~~---~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~-g~-~~~~~pmaGvP~h~~~~yl~~Lv~~ 115 (968)
.+++||+| |++|++||||||||||||||||||+||+++|++|||++|+ ++ .++++||||||+|+++.|++|||++
T Consensus 5 ~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~~ 84 (854)
T PRK05399 5 MSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVKK 84 (854)
T ss_pred cCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHHC
Confidence 34689985 9999999999999999999999999999999999999998 21 2356999999999999999999999
Q ss_pred CceEEEEeccCCcccCCCceeEeEeeeecCCCccccccccCCCCCCCCCCcc----EEEEEcCCceEEEEEeccccceeE
Q 002090 116 GYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP----VIGVSRSAKGYCIISILETMKTYS 191 (968)
Q Consensus 116 G~kVaI~EQ~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~----~~gi~~~~~~~~~~~~~~~~~~~~ 191 (968)
|||||||||+|+|+.+|++|+|+|++|+||||.+++.++++..+ ||+.|+. .+|| +|+|++||++.
T Consensus 85 GyKVaI~EQ~e~~~~~k~~v~R~v~~i~TpGT~~~~~~l~~~~~-~yl~ai~~~~~~~Gi-----a~~D~stg~~~---- 154 (854)
T PRK05399 85 GYKVAICEQVEDPATAKGPVKREVVRIVTPGTVTDEALLDEKQN-NYLAAIAQDGGGYGL-----AYLDLSTGEFR---- 154 (854)
T ss_pred CCEEEEEEecCChhhcCCccceEEEEEECCCeeecccccCCCCC-cEEEEEEECCCeEEE-----EEEECCCCeEE----
Confidence 99999999999999999999999999999999999888887777 8887764 4777 88888888877
Q ss_pred eecCCCHHHHHHHHHcCCcceEEEcCCCccCCCCCccccccCCCCccccccccccccc-cCCchHHHHHHHHhHhcCCCC
Q 002090 192 LEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW-FEGDPVIELLLKVKELYGLEN 270 (968)
Q Consensus 192 v~~~~~~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~v~~~~gl~~ 270 (968)
++++ +.+.|.+.|.+++|+||+++.+..... .... .........| |+.+.+...+. +.|+...
T Consensus 155 ~~~~-~~~~L~~~l~~~~P~Eil~~~~~~~~~-----~~~~-------~~~~~~~~~~~f~~~~~~~~l~---~~f~~~~ 218 (854)
T PRK05399 155 VTEL-DEEELLAELARLNPAEILVPEDFSEDE-----LLLL-------RRGLRRRPPWEFDLDTAEKRLL---EQFGVAS 218 (854)
T ss_pred EEEE-cHHHHHHHHHhcCCcEEEEcCCcchhh-----Hhhc-------cccceeccccccChHHHHHHHH---HHhCcCC
Confidence 8887 578899999999999999987652111 0000 1112223445 54434333333 3444322
Q ss_pred cccccccccccCCcccc--e-eechhhhcccCCCCCCCccceEecCCCccCCCHHHHHhhccCCCc-----chHHHHHHH
Q 002090 271 EVTFRNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-----YEIASTIQA 342 (968)
Q Consensus 271 ~~~~~~~~~~~~~~~~~--L-yLd~~Tq~~ll~~~~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~-----~sl~~~I~~ 342 (968)
...+.. .......+.+ + || ..+|...+++ .+.+..+...++|.||..|+++|+|+++. +||++.+|+
T Consensus 219 ~~~~~~-~~~~~~~a~~all~Yl-~~~~~~~~~~---~~~~~~~~~~~~m~lD~~tl~~Lei~~~~~~~~~gSL~~~ld~ 293 (854)
T PRK05399 219 LDGFGV-DLPLAIRAAGALLQYL-KETQKRSLPH---LRSPKRYEESDYLILDAATRRNLELTENLRGGRKNSLLSVLDR 293 (854)
T ss_pred ccccCC-CCHHHHHHHHHHHHHH-HHhchhhhhc---cCCCEEECCCCEEEcCHHHHHhccCCccCCCCCCCcHHHHhcc
Confidence 111100 0012344555 4 99 7777755555 56677778889999999999999999985 499999999
Q ss_pred HHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHH
Q 002090 343 ICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECR 422 (968)
Q Consensus 343 ~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~ 422 (968)
|+|+||+ |+|++||.+| ++|...|++||++|++|.+|+.++..++..|..++ |++|+++++.
T Consensus 294 t~T~~G~--------RlLr~wl~~P---l~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~-------Dlerll~ri~ 355 (854)
T PRK05399 294 TVTAMGG--------RLLRRWLHRP---LRDREAIEARLDAVEELLEDPLLREDLRELLKGVY-------DLERLLSRIA 355 (854)
T ss_pred CCCcHHH--------HHHHHHHhCc---CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCC-------CHHHHHHHHH
Confidence 9999999 9999999999 99999999999999999999999999999999888 9999999999
Q ss_pred HHhhchhhhhhccCCchhhhcccCCCch------------------------hHHhhcchhh---------hhhhhhccc
Q 002090 423 LASVRIGEMISLDGESDQKICSYDNIPS------------------------EFFEDMESTW---------KGRVKRIHI 469 (968)
Q Consensus 423 ~~~~~i~~~i~l~~e~~~~~~~~~~I~~------------------------~~~~~ld~~~---------~g~v~~~~~ 469 (968)
.....+++++.+ ...+..++. .+.+.++..+ .+.+-+...
T Consensus 356 ~~~~~~~dl~~l-------~~~l~~~~~l~~~l~~~~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~ 428 (854)
T PRK05399 356 LGRANPRDLAAL-------RDSLEALPELKELLAELDSPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGY 428 (854)
T ss_pred hcCCCHHHHHHH-------HHHHHHHHHHHHHHHhcCcHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCC
Confidence 888888888775 111111111 1111111000 011112233
Q ss_pred chhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceeeeccccccccccCCCCccccccccccc
Q 002090 470 EPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAV 549 (968)
Q Consensus 470 ~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~ 549 (968)
.+.++++++..+.+...+. .+..+++. ++|+.+.+++|++..| |+++++ +.....+++ .|
T Consensus 429 ~~~Ld~lr~~~~~~~~~l~----~~~~~~~~---~~~~~~l~~~~~~~~g------y~iev~----~~~~~~vp~---~~ 488 (854)
T PRK05399 429 DAELDELRALSDNGKDWLA----ELEARERE---RTGISSLKVGYNKVFG------YYIEVT----KANLDKVPE---DY 488 (854)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHHHHHHH---HcCCCceEEEEcCcee------EEEEEE----cchhhhCCh---hh
Confidence 4455566666666333332 34444444 5677778888888887 888876 222334443 34
Q ss_pred ccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccc
Q 002090 550 DSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVF 629 (968)
Q Consensus 550 s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~~ 629 (968)
...+++.+.++|+|+++.+.++++.+++.++.+.+.+++.++...+..+...+..+...++.+|+++|+|..|..++||+
T Consensus 489 ~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~ 568 (854)
T PRK05399 489 IRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVR 568 (854)
T ss_pred hheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccc
Confidence 44455667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCcceeEEc-CCCcccccc-CCCceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC
Q 002090 630 PALKDIELDGANCLKMN-GLSPYWFDA-AEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 704 (968)
Q Consensus 630 P~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~ 704 (968)
|+++++ ..+.++ ++||+.... ..+.+|+||+.+ +++++|||||||||||+||++|.+++|||+|+|||++
T Consensus 569 P~~~~~-----~~l~i~~~rHP~le~~~~~~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~ 643 (854)
T PRK05399 569 PEFTDD-----PGIDIEEGRHPVVEQVLGGEPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAE 643 (854)
T ss_pred cEEeCC-----CCEEEEeccCcEEecccCCCceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceecc
Confidence 999874 224443 344443221 346799999999 4799999999999999999999999999999999999
Q ss_pred cCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEE
Q 002090 705 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLG 783 (968)
Q Consensus 705 ~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~v 783 (968)
.+.++.+|+||+++|..|++..+.|||+.||.+++.|+..+++++||||||||+||++.+|.++++++++++.+. ++++
T Consensus 644 ~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~ 723 (854)
T PRK05399 644 SARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKT 723 (854)
T ss_pred ceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 5999
Q ss_pred EEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 002090 784 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGV 858 (968)
Q Consensus 784 l~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~ 858 (968)
||+||++++.+++...+++.|+||.+...++++.|+|++.+|.+++|||++||+++|+|++||+||++++..++.
T Consensus 724 l~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~ 798 (854)
T PRK05399 724 LFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLES 798 (854)
T ss_pred EEEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 999999999999888899999999998888999999999999999999999999999999999999999999874
No 4
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-78 Score=703.37 Aligned_cols=774 Identities=21% Similarity=0.222 Sum_probs=555.5
Q ss_pred ccccCccccccCCccccCcccH---HHHHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCCCccccC
Q 002090 25 SNLLGLDVNLKNGSLKEGTLNW---EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCP 101 (968)
Q Consensus 25 ~~~lg~~~~~~~~~~~~~~l~~---~~~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~g~~~~~~pmaGvP 101 (968)
+||...+.++.--...-+++|| |||+||+++.|+|+||++|.|||+|..||.++++.++|..|. .++||||||
T Consensus 229 ~dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~----vN~~~~GfP 304 (1125)
T KOG0217|consen 229 GDPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMD----VNMPHSGFP 304 (1125)
T ss_pred CCCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecc----cccccCCCC
Confidence 3554433333322222345555 579999999999999999999999999999999999999998 479999999
Q ss_pred cccHHHHHHHHHHCCceEEEEeccCCcccC---------C-CceeEeEeeeecCCCccccccccCCCCCCCCCCc-----
Q 002090 102 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQA---------R-SRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPM----- 166 (968)
Q Consensus 102 ~h~~~~yl~~Lv~~G~kVaI~EQ~e~p~~a---------k-~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~----- 166 (968)
.++++.|+++|+++|||||.+||+|.|-+. | ++|+|+|++|+|-||.|+.+++..+.. .|+.++
T Consensus 305 E~sf~~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~~~~a-kylmai~e~~~ 383 (1125)
T KOG0217|consen 305 EGSFDYWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLTSDLA-KYLMAIKESEE 383 (1125)
T ss_pred ccchhhHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhccHHH-HHHHHHhhcCC
Confidence 999999999999999999999999988542 1 479999999999999999776554432 343332
Q ss_pred ------cEEEEEcCCceEEEEEeccccceeEeecCCCHH---HHHHHHHcCCcceEEEcCCCccCCCCCcccccc-CCCC
Q 002090 167 ------PVIGVSRSAKGYCIISILETMKTYSLEDGLTED---ALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEY-GEGG 236 (968)
Q Consensus 167 ------~~~gi~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~-~~~~ 236 (968)
...|+ ++.|.+||++. +.+|.++. .|.+.|+...|.|++...+..+.. |.+...+ -..+
T Consensus 384 ~~~~~~~s~gv-----c~iDtstge~~----~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~--t~~~ik~~~~~~ 452 (1125)
T KOG0217|consen 384 SYSTGEVSFGV-----CFIDTSTGEIN----IGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDP--TKVIIKLKLSSN 452 (1125)
T ss_pred CCCcCceeeeE-----EEEEcccceEE----EEEeecchhhhHHHHHHHcccHHHHHHHhhccCCc--eeeeeeeeecch
Confidence 26677 78888888777 88887543 389999999999999876652221 1111111 1112
Q ss_pred ccccccccccccccCCchHHHHHHHHhHhc---CCCCcccc-c--ccccccCCcccc--e-eechhhhc--ccCCCCCCC
Q 002090 237 LLWGECIARHFEWFEGDPVIELLLKVKELY---GLENEVTF-R--NVTVSYENRPRP--L-HLGTATQI--GAIPTEGIP 305 (968)
Q Consensus 237 ~l~~~~~~~~~~~f~~~~~~~ll~~v~~~~---gl~~~~~~-~--~~~~~~~~~~~~--L-yLd~~Tq~--~ll~~~~~~ 305 (968)
..++.+... .-|-.......++.. +-| |+++.+.. . +..-..+..+.+ + || ..... +++.-.+ .
T Consensus 453 ~~~n~~~~~-eFwdsek~~~eii~~--dy~~~~g~e~~~sil~~p~~~~~la~safg~~~~Yl-k~~~id~~llsm~n-~ 527 (1125)
T KOG0217|consen 453 LVENLVPKS-EFWDSEKTGREIISE--DYFESLGLEDSPSILKSPNTDKELALSAFGGLFYYL-KKLLIDEELLSMKN-F 527 (1125)
T ss_pred hhhcccChh-hhcchhhHHHHHhhh--hhhhcccccCchhhccCCCccchhhHHHHHHHHHHH-HHHhhHHHHhhhhh-h
Confidence 233433111 224222222222221 212 45544321 0 000012334444 2 55 22222 2332211 1
Q ss_pred ccceEecCCCccCCCHHHHHhhccCCCc------chHHHHHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHH
Q 002090 306 CLLKVLLPSNCSGLPILYVRDLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKN 379 (968)
Q Consensus 306 sll~~~l~~~~~~m~~r~Lr~L~l~p~~------~sl~~~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~ 379 (968)
..+.. ++...|.||..+|+||+++++. |+|+..+++|.|++|. |+|+.|+.+| +.+-..|+.
T Consensus 528 ~ey~~-~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGK--------Rllk~Wl~~P---l~~~~~I~~ 595 (1125)
T KOG0217|consen 528 EEYDS-LDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGK--------RLLKTWLMAP---LCDKEDIKQ 595 (1125)
T ss_pred hhcch-hcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHH--------HHHHHHhhCc---CCCHHHHHH
Confidence 22222 3344599999999999999997 5999999999999999 9999999999 999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhhc-h---hhhhhccC-------------------
Q 002090 380 VLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVR-I---GEMISLDG------------------- 436 (968)
Q Consensus 380 rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~-i---~~~i~l~~------------------- 436 (968)
||++|..+..+|..+..+...+..+| |+||++.|++.+..+ . .+.+...+
T Consensus 596 R~dav~~l~~~~~~~~~~~e~l~klP-------DlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~~~~~~~~~~v~~~~ 668 (1125)
T KOG0217|consen 596 RQDAVDSLGKAPMDRTKVGETLKKLP-------DLERLLVRIHNGGEKNKKKIADFIRVLEGFKEINKLLGSLINVLKEG 668 (1125)
T ss_pred HHHHHHHHhcCchhHHHHHHHHhhCC-------cHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999888 999999999988766 2 23332100
Q ss_pred Cchhhhcc-cCCCchhHHhhcc--hhhhh---------hhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccC
Q 002090 437 ESDQKICS-YDNIPSEFFEDME--STWKG---------RVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAP 504 (968)
Q Consensus 437 e~~~~~~~-~~~I~~~~~~~ld--~~~~g---------~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~ 504 (968)
+.-..++. ..-.|+ +..++. ..|+. .++.....+++++..+-.+.+...+ ..+....+. +
T Consensus 669 ~~~~~is~~~~~~p~-~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L----~~~L~~~rk---~ 740 (1125)
T KOG0217|consen 669 EGLRLISELLESMPN-LSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENEL----LAYLEEYRK---R 740 (1125)
T ss_pred HHHHHHHHHhcCcch-hhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHH----HHHHHHHHH---h
Confidence 00000000 000111 111110 00111 1122223333333322222211111 133333333 2
Q ss_pred CCCCChhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHH
Q 002090 505 LGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKV 584 (968)
Q Consensus 505 tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i 584 (968)
. ....|.|+.+.-.+ |..+++- ..+.+.- +.|-...+..+..+|.|+++......+.+++.....-.
T Consensus 741 l--~c~si~~~~vGk~~----y~lEvP~------n~~~~s~-~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~ 807 (1125)
T KOG0217|consen 741 L--GCSSIVFVDVGKDV----YQLEVPE------NGGVPSS-LRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSL 807 (1125)
T ss_pred c--CCCceeEeecCceE----EEEecCc------ccCCCCc-hHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 13345555444333 4445541 1122222 44555556667778899999999999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc--CCcccCccccccccCcceeEEcCCCccccccC--CCce
Q 002090 585 LELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRR--RKWVFPALKDIELDGANCLKMNGLSPYWFDAA--EGSA 660 (968)
Q Consensus 585 ~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~--~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 660 (968)
-...+.+...+..+....+.+...++.+|+++++|..|.. ..+|+|++.+. .+....+.+.++.|+++... ++.+
T Consensus 808 ~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~-~dt~~~l~~~~~~Hpcfsl~s~~~~f 886 (1125)
T KOG0217|consen 808 SDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVES-TDTPGFLIVKGLRHPCFSLPSTGTSF 886 (1125)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecc-cCCCceeEEecccCceeecCcCCCcc
Confidence 7788888888888887778888889999999999877654 56899999875 33332455666666666543 4578
Q ss_pred eeeeEeec-----eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHH
Q 002090 661 VHNTVDMQ-----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 735 (968)
Q Consensus 661 v~~~i~lg-----~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~ 735 (968)
++|++.+| .+.++|||||+|||||||++|.+++|+|+|++||++.+.+..+|.||+++|+.|.+..+.|||..++
T Consensus 887 ipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vEL 966 (1125)
T KOG0217|consen 887 IPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVEL 966 (1125)
T ss_pred ccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEec
Confidence 99999994 4667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhhccccccccccceeEEEeeCC
Q 002090 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG 814 (968)
Q Consensus 736 ~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~ 814 (968)
.+...|+..+++.+||++||.++||.+.+|.+|+.+++++|.+ .+|..+|+||||.++....+.+.+..+||......+
T Consensus 967 sET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e 1046 (1125)
T KOG0217|consen 967 SETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEE 1046 (1125)
T ss_pred cchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCC
Confidence 9999999999999999999999999999999999999999987 689999999999999888888889999999877666
Q ss_pred c-eeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 002090 815 Q-TVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNC 860 (968)
Q Consensus 815 ~-~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~~~ 860 (968)
. ++|+|++.+|.|++|||+.+|+++|+|..|+++|.....+++.+.
T Consensus 1047 ~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~ 1093 (1125)
T KOG0217|consen 1047 IDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSS 1093 (1125)
T ss_pred ccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999998887554
No 5
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=5.5e-77 Score=666.42 Aligned_cols=763 Identities=18% Similarity=0.180 Sum_probs=533.4
Q ss_pred cccH---HHHHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCCCccccCcccHHHHHHHHHHCCceE
Q 002090 43 TLNW---EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSV 119 (968)
Q Consensus 43 ~l~~---~~~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~g~~~~~~pmaGvP~h~~~~yl~~Lv~~G~kV 119 (968)
.+|| |+.++|.+|+|+||..+||.-|.+||+||+++||+|||.+.- +.++.-|.||-|.++.++.|||.+||||
T Consensus 161 ~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~---dhnFmtaS~P~~Rl~vHleRLv~~g~KV 237 (1070)
T KOG0218|consen 161 KYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHN---DHNFMTASFPDVRLNVHLERLVHHGLKV 237 (1070)
T ss_pred ccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEe---ccceeeccCCcchhhHHHHHHHhcCceE
Confidence 4555 589999999999999999999999999999999999999875 5679999999999999999999999999
Q ss_pred EEEeccCCcccCC------CceeEeEeeeecCCCccccc--cccCCCCCCCCCCccEEEEEc----CC-----ceEEEEE
Q 002090 120 CIVEEVQGPTQAR------SRKSRFISGHAHPGSPYVFG--LVGIDHDLDFPEPMPVIGVSR----SA-----KGYCIIS 182 (968)
Q Consensus 120 aI~EQ~e~p~~ak------~~v~R~v~~vvTPGT~~~~~--~l~~~~~~~~~~a~~~~gi~~----~~-----~~~~~~~ 182 (968)
||++|+|+++..+ +++.|.+++|+|.||..++. ++.-++-++- .+.+.+|+.. +. --++.+.
T Consensus 238 aVVkQtETAAiKs~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~-~ssfllcv~dn~~ksk~ksg~v~vglig 316 (1070)
T KOG0218|consen 238 AVVKQTETAAIKSHGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGD-TSSFLLCVRDNVHKSKEKSGVVKVGLIG 316 (1070)
T ss_pred EEEeehhhHHHHhcCCcccchHHHHHHHHhhhhhhccccccccchhhhcCC-cceEEEEEehhhhhhhhhcCceEEEEEE
Confidence 9999999887533 56999999999999975322 2211111111 3445677643 11 1578888
Q ss_pred eccccceeEeecCCC---HHHHHHHHHcCCcceEEEcCCCccCCCCCccccccCCCCcc-ccccccccccccC-CchHHH
Q 002090 183 ILETMKTYSLEDGLT---EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLL-WGECIARHFEWFE-GDPVIE 257 (968)
Q Consensus 183 ~~~~~~~~~v~~~~~---~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~f~-~~~~~~ 257 (968)
+...+|++...+|.+ .++|.+.+..++|.|++++..+...+.. . +...++- ...+ . .-|. +.++.+
T Consensus 317 VqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~ls~qt~a--l---l~~~~Vsve~~~-~---rv~r~~naV~q 387 (1070)
T KOG0218|consen 317 VQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTDLSPQTVA--L---LFKDNVSVELIH-K---RVYRLENAVVQ 387 (1070)
T ss_pred EecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCCCcHHHHH--H---HHhcccchhhhh-h---hhhhchhHHHH
Confidence 889999997777653 4558889999999999999886322100 0 0000000 0000 0 0011 111111
Q ss_pred HHH----HHhHhcCC----CCcccccccc-cccC-Ccc-cc-e--eechhhhc-ccCCCCCCCccceEecCCCccCCCHH
Q 002090 258 LLL----KVKELYGL----ENEVTFRNVT-VSYE-NRP-RP-L--HLGTATQI-GAIPTEGIPCLLKVLLPSNCSGLPIL 322 (968)
Q Consensus 258 ll~----~v~~~~gl----~~~~~~~~~~-~~~~-~~~-~~-L--yLd~~Tq~-~ll~~~~~~sll~~~l~~~~~~m~~r 322 (968)
-.. ++++.+.- ++..-...+. .++. +.+ .. + || ..... .++-. |+..+..-....|.+++.
T Consensus 388 ~ikla~e~~q~f~~~k~~l~gs~ii~li~nl~~psvic~la~~is~l-kefnlE~~l~~---psf~s~~ss~e~Mtls~n 463 (1070)
T KOG0218|consen 388 AIKLANEKIQNFEDDKEMLEGSEIICLIMNLSHPSVICLLAKLISHL-KEFNLEQVLLI---PSFYSPFSSKEHMTLSPN 463 (1070)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHH-HHhchHHheec---ccccCcccccceeeechh
Confidence 111 12211111 1100000000 0001 111 11 1 44 22222 22222 455555344556999999
Q ss_pred HHHhhccCCCc------chHHHHHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh---cChHH
Q 002090 323 YVRDLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMY---GNSEL 393 (968)
Q Consensus 323 ~Lr~L~l~p~~------~sl~~~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~---~~~~l 393 (968)
+|++|+++.+. |+|||.+|+|.|.+|. |.|+.|+..| +.|...|.+|||||+++- .+...
T Consensus 464 tLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~--------RmLr~WvtkP---Lvd~~~I~eRLDAVeeitshssnS~v 532 (1070)
T KOG0218|consen 464 TLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGL--------RMLREWVTKP---LVDVHQIEERLDAVEEITSHSSNSIV 532 (1070)
T ss_pred hhhceeeeeecCCCCcccceEEEeccchhHHHH--------HHHHHHHhcc---cccHHHHHHHHHHHHHHHhcccchHH
Confidence 99999999987 6999999999999999 9999999999 999999999999998772 44557
Q ss_pred HHHHHHhcCcccccccccccHHHHHHHHHHHhhch-hhhhhccC-------Cchhh--hcccCCCchhHHhhcchhhhhh
Q 002090 394 NEILELLMDPTWVATGLKIDFETLVEECRLASVRI-GEMISLDG-------ESDQK--ICSYDNIPSEFFEDMESTWKGR 463 (968)
Q Consensus 394 ~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~i-~~~i~l~~-------e~~~~--~~~~~~I~~~~~~~ld~~~~g~ 463 (968)
-+.+...+...+ |++|-+++|-..++.+ ++++.... +.... .-+-..++++..- ..++.+.+
T Consensus 533 f~si~~~l~rlp-------Dl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s~-~qS~LLrr 604 (1070)
T KOG0218|consen 533 FESINQMLNRLP-------DLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRSG-KQSPLLRR 604 (1070)
T ss_pred HHHHHHHHHhCc-------HhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccch-hccHHHHH
Confidence 777778888777 9999999999999888 55554200 00000 0000000100000 00000000
Q ss_pred -hhhc---ccchhHHHHHHHHHH----------HHHHhhcCchhhhhhhcc---ccc------------------CCCCC
Q 002090 464 -VKRI---HIEPEIAEVEMAAEA----------LSLAVTEDFLPIISRIKA---TTA------------------PLGGP 508 (968)
Q Consensus 464 -v~~~---~~~~~l~el~~~~~~----------L~~aI~~d~~p~~~~e~~---~i~------------------~tgg~ 508 (968)
+... .+...++-+-.+.+. +..- ..+| |...+-+. +|| .+..+
T Consensus 605 lisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd-~snf-pl~~e~~di~~virE~~ms~~~~~~hLaeiRk~Lk~p 682 (1070)
T KOG0218|consen 605 LISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKD-FSNF-PLYDESEDIIKVIRESEMSRSQLKEHLAEIRKYLKRP 682 (1070)
T ss_pred HHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhh-hccC-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0000 000000000000000 0000 0111 21111111 111 11111
Q ss_pred ChhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 509 KGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELL 588 (968)
Q Consensus 509 ~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil 588 (968)
++ .|..+.| -.+.+.+ ...+++.++.+|-..+.++-..+|.||++.+...++...++.+.-.-....
T Consensus 683 nl--ef~~vsg------v~flIEv-----kns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~ 749 (1070)
T KOG0218|consen 683 NL--EFRQVSG------VDFLIEV-----KNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQY 749 (1070)
T ss_pred Cc--eeEEecC------eeEEEEe-----cccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 11 1222222 2222222 234678899999999999999999999999988888777666665556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcccCccccccccCcceeEEc-CCCccccccCCCceeeeeEee
Q 002090 589 RGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM 667 (968)
Q Consensus 589 ~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~l 667 (968)
+++...+.++...+..+...++..||++++|..+...|||||+++++ ...+.++ |+||+.-...++.+||||+.+
T Consensus 750 ~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~----~~eI~ikngRhPvIe~Ll~d~fVPNdi~l 825 (1070)
T KOG0218|consen 750 KSFLNKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDG----QQEIIIKNGRHPVIESLLVDYFVPNDIML 825 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccc----hhhhhhhcCCCchHHHHhhhccCCCccee
Confidence 88888888888888888888899999999999999999999999984 1223332 445544334466799999999
Q ss_pred ----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHH
Q 002090 668 ----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT 743 (968)
Q Consensus 668 ----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~ 743 (968)
+++.+||||||+|||+++|++|++.+|||+|+||||+.+.++++|.+|++||..|++..+.|||+.||.....|+.
T Consensus 826 s~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~ 905 (1070)
T KOG0218|consen 826 SPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILK 905 (1070)
T ss_pred cCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhhcccccc-ccccceeEEEee-------CC
Q 002090 744 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIK-NAAYKAMGTEYL-------DG 814 (968)
Q Consensus 744 ~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~~~-~~~~~~~~~~~~-------~~ 814 (968)
.|++.+++||||.|+||.+.+|.+|+.+.++++.+ ..|.++|+||++.+.++....+ .+.++||+.... .+
T Consensus 906 kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~d 985 (1070)
T KOG0218|consen 906 KATKRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWD 985 (1070)
T ss_pred hcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCch
Confidence 99999999999999999999999999999999976 5789999999999998876554 467999998553 24
Q ss_pred ceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 002090 815 QTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNC 860 (968)
Q Consensus 815 ~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~~~ 860 (968)
.+.|+|++..|.+.+|||+.||+++++|.+|+.||-.+.+++|...
T Consensus 986 sVtfLYklvrGlasrSyGlnVAklA~ip~sii~rA~siSeeleke~ 1031 (1070)
T KOG0218|consen 986 SVTFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSISEELEKES 1031 (1070)
T ss_pred hhhhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999887553
No 6
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.1e-55 Score=501.27 Aligned_cols=746 Identities=19% Similarity=0.229 Sum_probs=508.0
Q ss_pred CCeEEEEeecchhhhHHHHHHHHHHHh-----CCCcCCCCCCCCCCccccCcccHHHHHHHHH-HCCceEEEEeccCCcc
Q 002090 56 PREVLLCRVGDFYEAIGIDACILVEYA-----GLNPFGGLRPESIPKAGCPVVNLRQTLDDLT-RNGYSVCIVEEVQGPT 129 (968)
Q Consensus 56 pd~vLlfR~GdFYE~f~~DA~~~~~~L-----gl~lt~g~~~~~~pmaGvP~h~~~~yl~~Lv-~~G~kVaI~EQ~e~p~ 129 (968)
-++|-||--||||-.||+||..+|+.. -|+.+.-...+..--+.+--..++..++.|+ ..+|+|-+.+--+.
T Consensus 30 ~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~vr~~l~~~~~~Ve~y~~~~~-- 107 (902)
T KOG0219|consen 30 TTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKVVRELLLVLRYRVEVYSSNQG-- 107 (902)
T ss_pred CceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHHHHHHHHHhccceEEeecCcc--
Confidence 389999999999999999999999863 2332220001123335555567888888776 79999999885421
Q ss_pred cCCCceeEeEeeeecCCCccccccccCCCCCCCCCCccEEEEE----cCCc--eEEEEEeccccceeEeecCCCHHH---
Q 002090 130 QARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVS----RSAK--GYCIISILETMKTYSLEDGLTEDA--- 200 (968)
Q Consensus 130 ~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~~~gi~----~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--- 200 (968)
.++++.=-+||...++..+.-+++ +-+.++...++. ...+ |++.+.+..+. +.+.++.+.+.
T Consensus 108 ------~w~l~~~~sPGN~~~fedll~~~~-~v~is~~~~~v~~~~~~~~~~vgv~~~d~~~~k--~~~~ef~Dn~~~sn 178 (902)
T KOG0219|consen 108 ------DWKLTKRGSPGNLVQFEDLLFSNN-DVPISIISLIVKHPGVDGQRRVGVAFVDTINVK--IGLSEFVDDDSFSN 178 (902)
T ss_pred ------ceeEEecCCCCcHHHHHHHHcccc-cchhhhhheeEEeeccCCCceeEEEEechhhee--eehhhhcCcHHHHH
Confidence 223333338999866554444433 222222222221 1111 44444444443 44677776555
Q ss_pred HHHHHHcCCcceEEEcCCCccCCCCCccccc-cCCCCccccccccccccccCCchHHHHHHHHhHhcCC----CCccccc
Q 002090 201 LVTKLRTSRYHHLFLHTSLRQNTSGTSRWGE-YGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGL----ENEVTFR 275 (968)
Q Consensus 201 l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~f~~~~~~~ll~~v~~~~gl----~~~~~~~ 275 (968)
+...+..++|.|++++.+...+.- .++.. +...+++.....++.++|- .+...+...++- ...+++.
T Consensus 179 le~~l~~lg~kEcll~~~~~~~~~--~kl~~~~~r~g~~~t~~~~~e~~~k------dv~~~l~~~l~~~~~~~~~~e~~ 250 (902)
T KOG0219|consen 179 LEALLIQLGPKECVLPEGSVAGEM--KKLRNIIDRCGVLITLRKKSESSWK------DVEQDLNRLLKSQEHAAYLPELE 250 (902)
T ss_pred HHHHHHhcCCeEEEecCcccchHH--HHHHHHHhccCeEEEEecccchhHH------HHHHHHHhcccchhhhccchHHH
Confidence 666888999999999954321110 01111 1222333333223333331 111111111110 0001010
Q ss_pred ccccccCCcccceeechhhhcccCCCCCCCccceEecCCCccCCCHHHHHhhccCCCcc-------hHHH-HHHHHHhhh
Q 002090 276 NVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAY-------EIAS-TIQAICKLM 347 (968)
Q Consensus 276 ~~~~~~~~~~~~LyLd~~Tq~~ll~~~~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~-------sl~~-~I~~~~t~~ 347 (968)
.........++..|+|...-.+...+ -.+... -...+|.||..+.|++.++|.++ +|.. .+|+|.|++
T Consensus 251 ~q~a~~~~~~~i~yl~~~~e~~~s~~---~ei~~~-~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~~ 326 (902)
T KOG0219|consen 251 LQLAMSALSALIKYLDLENEYSNSGK---YELTNH-GLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTLQ 326 (902)
T ss_pred hHHHHHHHHHHHHHHhhcccccccce---EEEeec-chHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhccccc
Confidence 00000001111125532222222111 122222 45668999999999999999982 5544 799999999
Q ss_pred hhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHH-HhcCcccccccccccHHHHHHHHHHHhh
Q 002090 348 SKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILE-LLMDPTWVATGLKIDFETLVEECRLASV 426 (968)
Q Consensus 348 g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~-~~l~~~~~~~~~~~dlerl~~~~~~~~~ 426 (968)
|. ++|..|+.+| +++...|..|++.|..+.++.+++..|+ .++..++ |+.|+..++. .+
T Consensus 327 G~--------rll~~w~~qp---L~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~p-------di~rl~~~l~--~~ 386 (902)
T KOG0219|consen 327 GE--------RLLRQWLKQP---LRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIP-------DISRLARRLM--KA 386 (902)
T ss_pred ch--------hhhhhhhhcc---hHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcCh-------hHHHhhhhhh--hc
Confidence 99 9999999999 9999999999999999999999999887 4455444 8888887766 55
Q ss_pred chhhhhhccC----------------C--chhhhccc-CCCch--hHHhhcchhh-------hhhhhhcccchhHHHHHH
Q 002090 427 RIGEMISLDG----------------E--SDQKICSY-DNIPS--EFFEDMESTW-------KGRVKRIHIEPEIAEVEM 478 (968)
Q Consensus 427 ~i~~~i~l~~----------------e--~~~~~~~~-~~I~~--~~~~~ld~~~-------~g~v~~~~~~~~l~el~~ 478 (968)
++.++...-. + ...+.+.+ ....+ .|....+..+ ...+=|.-+.+++.++++
T Consensus 387 ~L~d~~r~yq~~~~l~~~~~~l~~~~~~~~~ll~~~l~~~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq 466 (902)
T KOG0219|consen 387 NLQDVNRIYQAAKLLPTVVQVLISLSESHNRLLKSPLTEHLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELRE 466 (902)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHH
Confidence 5555543200 0 00000100 00000 1222211100 122223445666677777
Q ss_pred HHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCc
Q 002090 479 AAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGE 558 (968)
Q Consensus 479 ~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~ 558 (968)
..+.++..+.+.....-...+. . +...+++....-+| .++-++... .+.-+-...|+.....++.
T Consensus 467 ~LdeL~~~m~~~hkrv~~dl~~---D-~~kklkLe~~~~~G------~~~RlTr~e-----~~~LR~~k~y~eLstqK~G 531 (902)
T KOG0219|consen 467 KLDELERKMEKLHKKVSADLGL---D-PKKQLKLENSAQFG------WYFRVTRKE-----EKVLRKKKNYTELSTQKGG 531 (902)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC---C-cccceeeeccchhh------eeeeeeehh-----hhHhhccCCceEEEEeeCc
Confidence 7777666665443222211111 1 12344555555555 444444221 1111111123322334455
Q ss_pred EEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--cCCcccCcccccc
Q 002090 559 EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGR--RRKWVFPALKDIE 636 (968)
Q Consensus 559 e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~--~~~~~~P~~~~~~ 636 (968)
-+|+|.+|...++++.+...+..+...++.+++......|.+-|..+...++.+|+..++|+.|. -..|+||.+.+.
T Consensus 532 V~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~- 610 (902)
T KOG0219|consen 532 VKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPL- 610 (902)
T ss_pred EEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCcccccc-
Confidence 67999999999999999998888888999999999999999999999999999999999988876 679999999875
Q ss_pred ccCcceeEEc-CCCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchH
Q 002090 637 LDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF 711 (968)
Q Consensus 637 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~ 711 (968)
|...+.++ .+||++..-..-.+++|++.+ +++.+||||||+||||++|+.+-+++|||+|+|||++.+.++++
T Consensus 611 --gs~rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~Iv 688 (902)
T KOG0219|consen 611 --GSKRLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIV 688 (902)
T ss_pred --chhHHHHHhcccchhhccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchh
Confidence 33334444 445554333344689999999 58999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccCh
Q 002090 712 DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH 790 (968)
Q Consensus 712 ~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~ 790 (968)
|.|++++|+.|+..++.||||.+|-+.+.|++.+++.+||++|||++||.+.+|-.++|++-+++.. .||..||+||+|
T Consensus 689 D~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfh 768 (902)
T KOG0219|consen 689 DGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFH 768 (902)
T ss_pred hHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 589999999999
Q ss_pred hhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccchhh
Q 002090 791 GIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVM 862 (968)
Q Consensus 791 el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~~~~~ 862 (968)
++..++.....+.|.||.+...++++.-+|++.+|.|++|+|+++|+++|+|+.|++-|++.+.+++...+.
T Consensus 769 Elt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~ 840 (902)
T KOG0219|consen 769 ELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVI 840 (902)
T ss_pred HHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999766654
No 7
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=2.9e-50 Score=492.69 Aligned_cols=478 Identities=23% Similarity=0.292 Sum_probs=376.2
Q ss_pred eEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc-----------ccCCccHHHHHHHHHhcc-CCcccHHH
Q 002090 309 KVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV-----------TCSIPEFTCLVKLLELRE-ANHIEFCR 376 (968)
Q Consensus 309 ~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~-----------l~~i~dlrrL~~~l~~p~-a~~~d~~~ 376 (968)
..+.+.|.|++|.+.+++ +.|.. +. ..|+++++.+..+ +.+++|++++..++..+. .++.|+..
T Consensus 16 ~~l~~~~~t~~Gk~~l~~--l~P~~-~~-~~i~~~l~~~~e~~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~eL~~ 91 (782)
T PRK00409 16 EQLKTFAASELGKEKVLQ--LDPET-DF-EEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLE 91 (782)
T ss_pred HHHHhHcCCHHHHHHHHc--CCCCC-CH-HHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHhCCCCCCHHHHHH
Confidence 333557889999999999 57776 77 8888888776643 889999999999999754 88999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhcC-cccccccccccHHHHHHHH---HHHhhchhhhhhccCCchhhhcccCCCchhH
Q 002090 377 IKNVLDEILHMYGNSELNEILELLMD-PTWVATGLKIDFETLVEEC---RLASVRIGEMISLDGESDQKICSYDNIPSEF 452 (968)
Q Consensus 377 I~~rl~~v~~l~~~~~l~~~l~~~l~-~~~~~~~~~~dlerl~~~~---~~~~~~i~~~i~l~~e~~~~~~~~~~I~~~~ 452 (968)
|...+..+ ..++..+...-. .. ..-+..++..+ ......++.++ ...+.|.+++
T Consensus 92 i~~~l~~~------~~l~~~l~~~~~~~~------~~~L~~~~~~l~~~~~l~~~i~~~i----------d~~g~i~d~a 149 (782)
T PRK00409 92 IAKTLRYF------RQLKRFIEDLEEEEE------LPILEEWVAKIRTLPELEQEIHNCI----------DEEGEVKDSA 149 (782)
T ss_pred HHHHHHHH------HHHHHHHHhcccccc------hhHHHHHHHcCcCcHHHHHHHHHHh----------CCCCEECCCC
Confidence 99999998 555555543200 00 00222222222 22222333333 3345677788
Q ss_pred HhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceeeecccccccc
Q 002090 453 FEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTV 532 (968)
Q Consensus 453 ~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~ 532 (968)
+++|+ .+|.....+...|.+..-.+....+ . . .|.. ...++.++.++++++
T Consensus 150 S~eL~-----------------~iR~~~~~~~~~i~~~l~~~~~~~~-------~-~---~~L~-d~~it~r~~r~~i~v 200 (782)
T PRK00409 150 SEKLR-----------------GIRRQLRRKKSRIREKLESIIRSKS-------L-Q---KYLQ-DTIITIRNDRYVLPV 200 (782)
T ss_pred CHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHhcc-------c-c---cccc-cceEEEECCEEEEEe
Confidence 77776 5555555544444332211111110 0 0 1111 112344445566665
Q ss_pred ccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 533 WASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIG 612 (968)
Q Consensus 533 ~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~A 612 (968)
... .+..+++++|+++.+|.++|.++ .++.++++++.+++.++.+++.+++++++..+..+...|..+...++.+
T Consensus 201 k~~--~~~~~~g~v~~~s~sg~t~y~ep---~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~l 275 (782)
T PRK00409 201 KAE--YKHAIKGIVHDQSSSGATLYIEP---QSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDEL 275 (782)
T ss_pred chh--hhccCCCceeeEECCCCEEEEEc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 45568899999999988775443 3488899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcccCCcccCccccccccCcceeEEcCC-CccccccCCCceeeeeEee---ceEEEEEecCCCCcchHHHHH
Q 002090 613 KALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGL-SPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSI 688 (968)
Q Consensus 613 dal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i 688 (968)
|+++|+|..|..++||+|++++. ..+.+.+. ||+. ..+++|+||+++ +++++|||||||||||+||++
T Consensus 276 D~l~a~a~~a~~~~~~~P~~~~~-----~~i~l~~~rHPll---~~~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lkti 347 (782)
T PRK00409 276 DFIFARARYAKALKATFPLFNDE-----GKIDLRQARHPLL---DGEKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTL 347 (782)
T ss_pred HHHHHHHHHHHHCCCccceEcCC-----CcEEEcCcCCcee---ccCceECceeEECCCceEEEEECCCCCCcHHHHHHH
Confidence 99999999999999999999864 34666544 5543 235699999999 368999999999999999999
Q ss_pred HhHHHhhhcCceeccCc-CCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHH
Q 002090 689 CAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 689 ~gl~~la~~g~~vp~~~-~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
+++++|+|+|+|||+.. +.++++|++|.++|..+++..+.|+||.+|+++..++..+++|+|+|||||++||||.++.+
T Consensus 348 gl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~a 427 (782)
T PRK00409 348 GLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAA 427 (782)
T ss_pred HHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHH
Confidence 99999999999999985 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHH
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 847 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~ 847 (968)
++.++++++.+.|+++|++||+++++.+......+.+++|.+ +.+++.|+|++..|.+++|||+++|+++|+|++||+
T Consensus 428 la~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~--d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~ 505 (782)
T PRK00409 428 LAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF--DEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIE 505 (782)
T ss_pred HHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE--ecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHH
Confidence 999999999988999999999999998877777788887765 457899999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 002090 848 RAEDLYIAC 856 (968)
Q Consensus 848 rA~~~~~~~ 856 (968)
+|++++...
T Consensus 506 ~A~~~~~~~ 514 (782)
T PRK00409 506 EAKKLIGED 514 (782)
T ss_pred HHHHHHhhh
Confidence 999998764
No 8
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=1.9e-47 Score=466.51 Aligned_cols=474 Identities=23% Similarity=0.283 Sum_probs=369.1
Q ss_pred ecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc--------ccCCccHHHHHHHHHhcc-CCccc-HHHHHHH
Q 002090 311 LLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV--------TCSIPEFTCLVKLLELRE-ANHIE-FCRIKNV 380 (968)
Q Consensus 311 ~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~--------l~~i~dlrrL~~~l~~p~-a~~~d-~~~I~~r 380 (968)
+.+.+.+++|.+.+++ +.|.. +. ..|+++++.+..+ +.+++|++++..++..+. .++.+ +..|...
T Consensus 18 l~~~~~t~~gk~~~~~--l~P~~-~~-~~i~~~l~~~~e~~~~~~~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~ 93 (771)
T TIGR01069 18 LLKQTFTPLGKEDAIG--LKPPK-SV-EESKEIIIKLTALGSIENNVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNA 93 (771)
T ss_pred HHHHcCCHHHHHHHhc--CCCCC-CH-HHHHHHHHHHHHHHHhhccCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHH
Confidence 3557889999999999 56665 65 7777776666543 788999999999999765 67767 9999999
Q ss_pred HHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHH---HHhhchhhhhhccCCchhhhcccCCCchhHHhhcc
Q 002090 381 LDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECR---LASVRIGEMISLDGESDQKICSYDNIPSEFFEDME 457 (968)
Q Consensus 381 l~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~---~~~~~i~~~i~l~~e~~~~~~~~~~I~~~~~~~ld 457 (968)
+..+ ..++..+... ...+ -+..++..+. .....|.++ +...+.|.++++++|+
T Consensus 94 l~~~------~~l~~~l~~~-~~~~-------~L~~~~~~l~~~~~l~~~i~~~----------id~~g~i~d~aS~~L~ 149 (771)
T TIGR01069 94 LKTV------KHLKVLSEHV-LDLE-------ILFHLRLNLITLPPLENDIIAC----------IDDDGKVKDGASEELD 149 (771)
T ss_pred HHHH------HHHHHHHhcc-ccch-------HHHHHHhcCCCcHHHHHHHHHH----------hCCCCEECCCcCHHHH
Confidence 9988 5555554321 1100 1122221111 111222222 3344566677777765
Q ss_pred hhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceeeeccccccccccCCC
Q 002090 458 STWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTP 537 (968)
Q Consensus 458 ~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~ 537 (968)
+++.-...+...+.+.. ..+++..+ .-.|.. ...+++++.++++++...
T Consensus 150 -----------------~ir~~~~~~~~~i~~~l-------~~~~~~~~----~~~~l~-~~~it~r~~r~vipvk~~-- 198 (771)
T TIGR01069 150 -----------------AIRESLKALEEEVVKRL-------HKIIRSKE----LAKYLS-DTIVTIRNGRYVLPLKSG-- 198 (771)
T ss_pred -----------------HHHHHHHHHHHHHHHHH-------HHHHHhhc----hhhhhc-CceEEEECCEEEEEeeHH--
Confidence 44444444333332222 01111000 001221 124555556777776543
Q ss_pred CcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002090 538 GEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFA 617 (968)
Q Consensus 538 ~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~ 617 (968)
.+..+++++|+++.+|.++|.++ .++.++++++.+++.++.+++..++.+|+..+..+.+.|......++.+|+++|
T Consensus 199 ~~~~i~g~v~~~S~sg~t~~~ep---~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a 275 (771)
T TIGR01069 199 FKGKIKGIVHDTSSSGETFYIEP---QAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQA 275 (771)
T ss_pred HhhcCCCeEEEEeCCCCEEEEEc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999988775543 248889999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCcccCccccccccCcceeEEcCC-CccccccCCCceeeeeEeec---eEEEEEecCCCCcchHHHHHHhHHH
Q 002090 618 HVSEGRRRKWVFPALKDIELDGANCLKMNGL-SPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 618 ~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~i~lg---~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
.|..|...+||+|.+.+. ..+.+.+. ||+ + ...++|+++++++ ++++||||||+|||||||+|+|+.+
T Consensus 276 ~a~~a~~~~~~~P~~~~~-----~~i~l~~~rhPl-l--~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l 347 (771)
T TIGR01069 276 RARYAKAVKGEFPMPSFT-----GKIILENARHPL-L--KEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL 347 (771)
T ss_pred HHHHHHHCCCeeceecCC-----CCEEEccccCce-e--cCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH
Confidence 999999999999998763 24666654 554 2 2345999999993 7999999999999999999999999
Q ss_pred hhhcCceeccCc-CCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 002090 694 LGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 772 (968)
Q Consensus 694 la~~g~~vp~~~-~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~l 772 (968)
|+++|++||+.. ..++++++++.+++..+++..+.|+||.+|+++..++..+++|+|+|||||++||||.++.++++++
T Consensus 348 ~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~ai 427 (771)
T TIGR01069 348 MFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISI 427 (771)
T ss_pred HHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHH
Confidence 999999999976 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 002090 773 IETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 852 (968)
Q Consensus 773 l~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~ 852 (968)
++++.+.|+++|++||++++..+.....++.+.+|.++ .+++.|+|++.+|.++.|||+++|+++|+|++||++|+++
T Consensus 428 Le~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d--~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~ 505 (771)
T TIGR01069 428 LEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFD--EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTF 505 (771)
T ss_pred HHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEc--CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHH
Confidence 99999999999999999999888777788888888654 5789999999999999999999999999999999999999
Q ss_pred HHHh
Q 002090 853 YIAC 856 (968)
Q Consensus 853 ~~~~ 856 (968)
+...
T Consensus 506 ~~~~ 509 (771)
T TIGR01069 506 YGEF 509 (771)
T ss_pred HHhh
Confidence 8875
No 9
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=7.1e-45 Score=410.93 Aligned_cols=525 Identities=17% Similarity=0.200 Sum_probs=403.5
Q ss_pred CccCCCHHHHHhhccCCCc-----chHHHHHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 002090 315 NCSGLPILYVRDLLLNPPA-----YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYG 389 (968)
Q Consensus 315 ~~~~m~~r~Lr~L~l~p~~-----~sl~~~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~ 389 (968)
+..-||..+-+.+++.++. .++..+++.|.|+||. |+|++-+.+| ++|..-|..||++++++..
T Consensus 257 nT~~id~~~~~~lelV~~~~~kn~~~l~~vl~~T~t~~g~--------r~lRssilqp---l~d~~ti~~rleaiqeL~a 325 (867)
T KOG0220|consen 257 NTAMIDSSSAQSLELVINNQYKNNHTLFGVLNYTKTPGGY--------RRLRSSILQP---LTDIETINMRLEAIQELLA 325 (867)
T ss_pred ceeeeecccccceEEechhhhhcccceeeeeeeeecccch--------hhHHhhhccc---ccchhhhhHHHHHHHHHhc
Confidence 3455899999999999986 2777899999999999 9999999999 9999999999999999999
Q ss_pred ChHHHHHHHHhcCcccccccccccHHHHHHHHHHHh---------hchhhhhhc---------------cCCchhhhccc
Q 002090 390 NSELNEILELLMDPTWVATGLKIDFETLVEECRLAS---------VRIGEMISL---------------DGESDQKICSY 445 (968)
Q Consensus 390 ~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~---------~~i~~~i~l---------------~~e~~~~~~~~ 445 (968)
++.+...|+..++..+ |++++++.+-... ..|...+.+ +...+.+...-
T Consensus 326 ~~~L~~~Lr~~~k~~~-------dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk~tL~lv~~~~~al~~~~s~~~~e~~ 398 (867)
T KOG0220|consen 326 DEELFFGLRSVIKRFL-------DLDQLLSVLVQIPTQDTVNAAESKINNLIYLKHTLELVDPLKIALKNCNSNLLREYY 398 (867)
T ss_pred CchHhhhhHHHHhhhh-------hHHHHHHHHHhhhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 9999999998887655 8888777665332 122222221 00011111111
Q ss_pred CCCch---hH-----Hhhcchh--h------hhhhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCC
Q 002090 446 DNIPS---EF-----FEDMEST--W------KGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPK 509 (968)
Q Consensus 446 ~~I~~---~~-----~~~ld~~--~------~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~ 509 (968)
+.+++ ++ .+..+.+ | .+.=+-++++...+.+-++++.....+.++...++.+.++ + +..+
T Consensus 399 ~~~~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E---~-~~~n 474 (867)
T KOG0220|consen 399 GSFKDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGE---K-FSLN 474 (867)
T ss_pred HHhcchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHh---h-cCcc
Confidence 22222 11 1111111 1 1112347777777778888888777777776554444444 2 3456
Q ss_pred hhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 510 GEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLR 589 (968)
Q Consensus 510 ~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~ 589 (968)
++..|+...| .++.++-.--......+|. .+...-..+....|+|..+.+.++++++.-.+++-.-..++.
T Consensus 475 l~~~f~sarG------F~~ri~~~~~~~~~~~lP~---~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~ 545 (867)
T KOG0220|consen 475 LRLSFSSARG------FFIRITTDCIALPSDTLPS---EFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVC 545 (867)
T ss_pred cccccccccc------EEEEeeccccccccccCch---hhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777666 3333321000111223333 222222233445588999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcccCccccc--cccCcceeEEcCCCccccccCCCceeeeeEee
Q 002090 590 GLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI--ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM 667 (968)
Q Consensus 590 eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~l 667 (968)
++..++..++..+..++.+++.+|++++++..+...+|++|++++. |.+|| ||++-.+..++++-|+..+
T Consensus 546 ~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~slaI~qGR--------HPILe~i~~ek~i~N~t~~ 617 (867)
T KOG0220|consen 546 KLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTDSLAIKQGR--------HPILEKISAEKPIANNTYV 617 (867)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCceeeccCC--------CchhhhhcccCcccCccee
Confidence 9999999999999999999999999999999999999999999986 44444 4444334456777788877
Q ss_pred ---ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh
Q 002090 668 ---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 668 ---g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~ 744 (968)
.++.+|||||||||||+||++|.+.+|||+|+||||..+.+|+|++||++||-.|++....|+|+.||++.+.|+..
T Consensus 618 t~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~ 697 (867)
T KOG0220|consen 618 TEGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQN 697 (867)
T ss_pred ecccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEeeCCceee-eeeee
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP-TWKLV 823 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~l~ 823 (968)
+.+.+||+|||.++||+.++|.+|.+++.|++.+....++++||+.++++++...+.+.++|+..+-.++...+ .|+|.
T Consensus 698 a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLs 777 (867)
T KOG0220|consen 698 ANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLS 777 (867)
T ss_pred CCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhhh
Confidence 99999999999999999999999999999999998999999999999999999999999999999887777665 69998
Q ss_pred cCCCC-CcHHHHHHHHcCCCHHHHHHHHHHHHHhccchhhhhcccCCCCcccCcceeEE
Q 002090 824 DGICR-ESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYV 881 (968)
Q Consensus 824 ~G~~~-~s~a~~~A~~~glp~~vi~rA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (968)
.|... .-||+++|+..-+|.+|+..|+.+..++.++.. ..+...++...+..||.
T Consensus 778 rg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v~---~~~rd~~~~~rq~~Vy~ 833 (867)
T KOG0220|consen 778 RGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQIL---QNQRDTPEMERQRAVYH 833 (867)
T ss_pred hhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHHHH---hhccCchHHHHHHHHHH
Confidence 88654 579999999999999999999999887754422 22223444444444444
No 10
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=5.6e-41 Score=372.62 Aligned_cols=509 Identities=19% Similarity=0.255 Sum_probs=359.5
Q ss_pred ccceEecCCCccCCCHHHHHhhccCCCc-------------chHHHHHHHHHhhhhhcccCCccHHHHHHHHHhccCCcc
Q 002090 306 CLLKVLLPSNCSGLPILYVRDLLLNPPA-------------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHI 372 (968)
Q Consensus 306 sll~~~l~~~~~~m~~r~Lr~L~l~p~~-------------~sl~~~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~ 372 (968)
-.+..+.-.+.+.+|-.|+..|-++|.- -|++..+|+|....|. ++|+.|+.+| ..
T Consensus 226 ~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l~n~c~s~~g~--------k~Lr~Wf~nP---tt 294 (849)
T KOG0221|consen 226 LGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLFGLLNRCHSKWGE--------KLLRLWFTNP---TT 294 (849)
T ss_pred cceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHHHHHHHHhhHHHH--------HHHHHHhcCC---CC
Confidence 3444545566788999999999999975 1999999999999999 9999999999 99
Q ss_pred cHHHHHHHHHHHHHHhc--ChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhhc----------------hhhhhhc
Q 002090 373 EFCRIKNVLDEILHMYG--NSELNEILELLMDPTWVATGLKIDFETLVEECRLASVR----------------IGEMISL 434 (968)
Q Consensus 373 d~~~I~~rl~~v~~l~~--~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~----------------i~~~i~l 434 (968)
|..+|..|++.|.+|.+ |.++...|..++..+. ++--.++++..+... |.+++.
T Consensus 295 d~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k-------~~~~~~~~~~sg~t~l~~W~~~~stv~~~~~i~~~~r- 366 (849)
T KOG0221|consen 295 DLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIK-------NVPLILKRMKSGHTKLSDWQVLYSTVYSALGIRDACR- 366 (849)
T ss_pred cHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcc-------cHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999988884 6777888887776655 555455554433222 222221
Q ss_pred cCCchhhhcccCCCchhHHhhcch---------hhhhhh--hh----cccchhHHHHHHHHHHHHHHhhcCchhhhhhhc
Q 002090 435 DGESDQKICSYDNIPSEFFEDMES---------TWKGRV--KR----IHIEPEIAEVEMAAEALSLAVTEDFLPIISRIK 499 (968)
Q Consensus 435 ~~e~~~~~~~~~~I~~~~~~~ld~---------~~~g~v--~~----~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~ 499 (968)
..|+.+..-..+...+..++.. +|-+.. .| -.+.+++||.|.....+..-+. .+-.++.
T Consensus 367 --slp~s~~~~~~~~~~~~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~~lp~~Lt----~vAr~e~ 440 (849)
T KOG0221|consen 367 --SLPQSIQLFRDIAQEFSDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYMGLPSFLT----EVARKEL 440 (849)
T ss_pred --hCccchhhhhHHHHHHHHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHccchHHHH----HHHHHHH
Confidence 1222222222222233332211 110000 00 2245666677766666322221 1111111
Q ss_pred ccccCCC--CCChhhhhhhcccceeeeccccccccccC-CCCcccccccccc--cccCCCccCcEEeehHHHHHHHHHHH
Q 002090 500 ATTAPLG--GPKGEILYAREHEAVWFKGKKFRPTVWAS-TPGEEQIKQLKPA--VDSKGRKVGEEWFSTLKVEEALERYH 574 (968)
Q Consensus 500 ~~i~~tg--g~~~ki~y~~~~g~v~l~~~~~~~~~~~~-~~~~~~I~~l~~~--~s~~g~~v~~e~f~T~eL~ea~~k~~ 574 (968)
. .++ .++ ...++++...|.+++..- ......++..-.. +....+ -+|.+.+.+++.+.+.
T Consensus 441 ~---~L~~~~ps--------v~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~----l~~rnart~eLD~~~G 505 (849)
T KOG0221|consen 441 E---NLDSRIPS--------VSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEK----LHYRNARTKELDALLG 505 (849)
T ss_pred H---hhCCCCCc--------eeEEEeeceeeEEecccccchhhcCCcccchHHHhcccce----eEeecccHHhHHHHhh
Confidence 1 112 222 233444443344332110 0011112111111 111111 1255666677666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcccCccccccccCcceeEEcCCCccccc
Q 002090 575 EAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD 654 (968)
Q Consensus 575 ~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 654 (968)
+..-++.+....++-+|-.++......|...-.+.+.+|+++++|..|.++||.+|.++++.. .+.+++-+|+.+.
T Consensus 506 DIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~~----il~I~ngrh~l~e 581 (849)
T KOG0221|consen 506 DIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEVL----ILRIQNGRHPLME 581 (849)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHHH----HHHHHcCChhHHH
Confidence 666666666667777777777777777777777889999999999999999999999998610 0112222333333
Q ss_pred cCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccc
Q 002090 655 AAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSS 730 (968)
Q Consensus 655 ~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~ 730 (968)
...+.+|||+... |++.+|||||.||||.+||+++.++.++++|+||||+.+.++.+|+||++|...+++..++|+
T Consensus 582 ~~~dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gqST 661 (849)
T KOG0221|consen 582 LCADTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQST 661 (849)
T ss_pred HHHHhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhhhH
Confidence 3457899999998 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC---cEEEEeccChhhhhcccccc--ccccc
Q 002090 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG---CLGIVSTHLHGIFSLPLKIK--NAAYK 805 (968)
Q Consensus 731 fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g---~~vl~~TH~~el~~~~~~~~--~~~~~ 805 (968)
|+.+..|++.+++.|+..||+|+||.+.||++.+|.++..+++.+...+| .+|+++||+|++......-. .+.++
T Consensus 662 FmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfl 741 (849)
T KOG0221|consen 662 FMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFL 741 (849)
T ss_pred HHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhhh
Confidence 99999999999999999999999999999999999999999999998766 46999999999986433222 34455
Q ss_pred eeEEE-eeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 002090 806 AMGTE-YLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGV 858 (968)
Q Consensus 806 ~~~~~-~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~ 858 (968)
.|.+. ...+.++|.|++.+|....|+|+.+|+.+|+|+.|+.||++++...+.
T Consensus 742 tm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~s 795 (849)
T KOG0221|consen 742 TMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRS 795 (849)
T ss_pred hHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHc
Confidence 55542 356789999999999999999999999999999999999999997743
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=6.5e-41 Score=357.36 Aligned_cols=227 Identities=37% Similarity=0.554 Sum_probs=191.2
Q ss_pred cccCccccccccCcceeEEc-CCCcccccc-CCCceeeeeEeec----eEEEEEecCCCCcchHHHHHHhHHHhhhcCce
Q 002090 627 WVFPALKDIELDGANCLKMN-GLSPYWFDA-AEGSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLM 700 (968)
Q Consensus 627 ~~~P~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~v~~~i~lg----~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~ 700 (968)
||+|+++++ ..+.++ ++||+.... .++++|+||+.++ ++++|||||||||||+||+|+.+++|||+|+|
T Consensus 1 y~~P~~~~~-----~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~ 75 (235)
T PF00488_consen 1 YCRPKISEE-----KSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCF 75 (235)
T ss_dssp EB-EEEEST-----TEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--
T ss_pred CcccEEcCC-----CCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCce
Confidence 899999985 356665 557765444 4678999999992 58999999999999999999999999999999
Q ss_pred eccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-c
Q 002090 701 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-I 779 (968)
Q Consensus 701 vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~ 779 (968)
|||+.+.++.+|+|+++++..|++..+.|+|+.||+++..++..+++.+|||+||+++||++.+|.+++++++++|.+ .
T Consensus 76 VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~ 155 (235)
T PF00488_consen 76 VPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKS 155 (235)
T ss_dssp BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTT
T ss_pred eeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CcEEEEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 002090 780 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGV 858 (968)
Q Consensus 780 g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~ 858 (968)
++.+|++||++++.+......++.+.+|.+...++.+.++|++.+|.+..|||+++|+++|+|++||+||++++++++.
T Consensus 156 ~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~l~~ 234 (235)
T PF00488_consen 156 GCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQLEE 234 (235)
T ss_dssp T-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHHHHT
T ss_pred cccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHhc
Confidence 9999999999999988777778889999999889999999999999999999999999999999999999999998753
No 12
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=6.8e-38 Score=329.57 Aligned_cols=193 Identities=36% Similarity=0.565 Sum_probs=183.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchH
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs 732 (968)
++++|+||+++ +++++|+||||+||||++++++++++|+|+|+|||++.+.++.+|.||++++..|++..+.|+|+
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~ 94 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFM 94 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHH
Confidence 35799999999 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEeccChhhhhccccccccccceeEEEe
Q 002090 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 811 (968)
Q Consensus 733 ~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~ 811 (968)
.||++++.|+..+++|+|+|||||++|||+.++.++++++++++.+. ++++|++||+++++......+++.++||.+..
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~ 174 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAV 174 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886 99999999999999877667789999999876
Q ss_pred eC------CceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHH
Q 002090 812 LD------GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849 (968)
Q Consensus 812 ~~------~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA 849 (968)
.+ +++.|+|++.+|.+++|||+++|+++|+|++|++||
T Consensus 175 ~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 175 KNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred eccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 55 789999999999999999999999999999999997
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4.1e-36 Score=318.46 Aligned_cols=200 Identities=31% Similarity=0.488 Sum_probs=187.3
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchH
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs 732 (968)
++++++||+++ +++++|+||||||||||+|+|+.+.+|+|+|+|||++.+.++.++.++.+++..++...+.|+|+
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~ 94 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFM 94 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHH
Confidence 46799999999 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhhccccccccccceeEEEe
Q 002090 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 811 (968)
Q Consensus 733 ~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~ 811 (968)
.+|.+++.+++.+++|+|+|||||++||++.++..+++.+++++.+ .|+++|++||++++.++++....+.+++|....
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 9999999999999999999999999999999999999999898875 589999999999999888888888889988766
Q ss_pred eC--CceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 002090 812 LD--GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 856 (968)
Q Consensus 812 ~~--~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~ 856 (968)
.+ +++.|+|++.+|.++.|||+++|+++|+|++|++||+++..++
T Consensus 175 ~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 175 DDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred eCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 55 8899999999999999999999999999999999999998865
No 14
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.1e-36 Score=319.12 Aligned_cols=193 Identities=34% Similarity=0.484 Sum_probs=179.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchH
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs 732 (968)
.+++++|++++ +++++|+||||+||||++|+++++.+++|+|+++|+..+.++++|+||++++..|++..+.|+|+
T Consensus 16 ~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~ 95 (222)
T cd03287 16 DKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFM 95 (222)
T ss_pred CCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHH
Confidence 35799999999 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEeccChhhhhcccc-ccccccceeEEE
Q 002090 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLK-IKNAAYKAMGTE 810 (968)
Q Consensus 733 ~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~vl~~TH~~el~~~~~~-~~~~~~~~~~~~ 810 (968)
.+|++++.++..+++++|+|||||++|||+.++.++++++++++.+. ++++|++||+++++++... ...+.++||.+.
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~ 175 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYL 175 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEE
Confidence 99999999999999999999999999999999999999999999887 8999999999999887654 245778888754
Q ss_pred e--------eCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHH
Q 002090 811 Y--------LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 849 (968)
Q Consensus 811 ~--------~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA 849 (968)
. .++++.|+|++.+|.++.|||+++|+++|+|++|++||
T Consensus 176 ~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 176 ESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred EeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 3 34689999999999999999999999999999999997
No 15
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=1.6e-35 Score=312.88 Aligned_cols=210 Identities=35% Similarity=0.498 Sum_probs=193.6
Q ss_pred ccCcceeEEcCCCccccccCCCceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHH
Q 002090 637 LDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 713 (968)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~ 713 (968)
.+++||+...-. ...++|+|++++ .++++|+||||||||||||+++++.++++.|.++|+..+.++++++
T Consensus 3 ~~~~hp~~~~~~-------~~~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~ 75 (216)
T cd03284 3 EGGRHPVVEQVL-------DNEPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDR 75 (216)
T ss_pred ccccCCEEeecc-------CCCceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceee
Confidence 456666654311 135789999999 4799999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEeccChhh
Q 002090 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGI 792 (968)
Q Consensus 714 i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~vl~~TH~~el 792 (968)
+|.+++..|++..+.|+|..++.++..++..+++|+|+|||||++||++.++..+.+.+++++.+. ++++|++||++++
T Consensus 76 i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l 155 (216)
T cd03284 76 IFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL 155 (216)
T ss_pred EeccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH
Confidence 999999999999999999999999999999999999999999999999999999989999999887 8999999999999
Q ss_pred hhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHH
Q 002090 793 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY 853 (968)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~ 853 (968)
.++.+...++.+++|.....++++.++|++.+|.++.|||+++|+++|+|++|++||++++
T Consensus 156 ~~l~~~~~~v~~~~~~~~~~~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~~ 216 (216)
T cd03284 156 TELEGKLPRVKNFHVAVKEKGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred HHHhhcCCCeEEEEEEEEeeCCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHhC
Confidence 9988888889999999888899999999999999999999999999999999999999873
No 16
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.3e-34 Score=299.25 Aligned_cols=184 Identities=36% Similarity=0.556 Sum_probs=174.8
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCc
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 749 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~ 749 (968)
+++||||||||||||||+|+...+++|+|++||++.+.++++|+++.+++..+++..+.|+|+.+|++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCC
Q 002090 750 LVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 828 (968)
Q Consensus 750 LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~ 828 (968)
|+|+|||++|||+.++..+.+.+++++.+. ++++|++||++++.+..+...++.+++|.....++++.++|++.+|.++
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~~ 160 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVAG 160 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCCC
Confidence 999999999999999999999999998874 8999999999999888877788999999988888889999999999999
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHH
Q 002090 829 ESLAFETAKREGVPETIIQRAEDLY 853 (968)
Q Consensus 829 ~s~a~~~A~~~glp~~vi~rA~~~~ 853 (968)
.|||+++|+++|+|++|++||++++
T Consensus 161 ~s~a~~~a~~~g~~~~i~~~a~~~~ 185 (185)
T smart00534 161 KSYGIEVAKLAGLPKEVIERAKEIL 185 (185)
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHhC
Confidence 9999999999999999999999873
No 17
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.7e-33 Score=294.21 Aligned_cols=184 Identities=28% Similarity=0.389 Sum_probs=173.0
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchH
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 732 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs 732 (968)
.+++++||+++ +++++|+||||+||||++|+++++++++|+|++||+..+.++.+++++.+++..|++..+.|+|+
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs 93 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFA 93 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHH
Confidence 56799999999 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEee
Q 002090 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 812 (968)
Q Consensus 733 ~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~ 812 (968)
.||+++..+++.+++|+|+|||||++|||+.++..+.+++++++.+.|+++|++||++++++......++.+.+|..+..
T Consensus 94 ~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 173 (204)
T cd03282 94 SEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSI 173 (204)
T ss_pred HHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999998777667888999987664
Q ss_pred -CCceeeeeeeecCCCC-CcHHHHHHHHcC
Q 002090 813 -DGQTVPTWKLVDGICR-ESLAFETAKREG 840 (968)
Q Consensus 813 -~~~~~~~y~l~~G~~~-~s~a~~~A~~~g 840 (968)
++++.|+|++.+|.+. .|||+++|+.+.
T Consensus 174 ~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 174 NSNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred CCCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 4889999999999999 999999999764
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=8.9e-33 Score=291.31 Aligned_cols=184 Identities=33% Similarity=0.485 Sum_probs=170.3
Q ss_pred CceeeeeEee--c--eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHH
Q 002090 658 GSAVHNTVDM--Q--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733 (968)
Q Consensus 658 ~~~v~~~i~l--g--~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~ 733 (968)
+++|+||+.+ + ++++|+||||+|||||||+|+++.++++.|+++|+..+.++++|+++.+++..+++..+.|+|+.
T Consensus 15 ~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~ 94 (213)
T cd03281 15 DSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMI 94 (213)
T ss_pred CceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHH
Confidence 5799999999 2 78999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc---CcEEEEeccChhhhhccc--cccccccceeE
Q 002090 734 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI---GCLGIVSTHLHGIFSLPL--KIKNAAYKAMG 808 (968)
Q Consensus 734 ~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~---g~~vl~~TH~~el~~~~~--~~~~~~~~~~~ 808 (968)
+|++++.++..+++++|+|||||++|||+.++.+++.++++++.+. +.++|++||++++++... ..+.+.+++|.
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~ 174 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTME 174 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999765 358999999999988664 45778899999
Q ss_pred EEee------CCceeeeeeeecCCCCCcHHHHHHHHcCC
Q 002090 809 TEYL------DGQTVPTWKLVDGICRESLAFETAKREGV 841 (968)
Q Consensus 809 ~~~~------~~~~~~~y~l~~G~~~~s~a~~~A~~~gl 841 (968)
+... .+++.|+|++.+|.++.|||+++|+++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 175 VLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 8665 48999999999999999999999999986
No 19
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.98 E-value=6.8e-32 Score=281.61 Aligned_cols=184 Identities=28% Similarity=0.379 Sum_probs=171.5
Q ss_pred CCceeeeeEee--ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHH
Q 002090 657 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734 (968)
Q Consensus 657 ~~~~v~~~i~l--g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~ 734 (968)
.+++|+||+++ |++++|+||||||||||+|+|+|.+++++.|.++|+....++ .+.+|.+++..|++..+.+.|..+
T Consensus 12 ~~~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~~~d~l~~~~s~~~~e 90 (199)
T cd03283 12 REKRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIRVSDDLRDGISYFYAE 90 (199)
T ss_pred CCCeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEeccchhccccccChHHHH
Confidence 35789999999 789999999999999999999999999999999999888777 788999999999999999999999
Q ss_pred HHHHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEee
Q 002090 735 MSEIRSIVTATT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 812 (968)
Q Consensus 735 ~~~~~~il~~a~--~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~ 812 (968)
++++..++..+. +|+++|+|||++|||+.++..+...+++.+.+.|.++|++||+++++......+++.+++|.....
T Consensus 91 ~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~ 170 (199)
T cd03283 91 LRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDID 170 (199)
T ss_pred HHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEE
Confidence 999999999988 999999999999999999988878888888888999999999999998877788999999999888
Q ss_pred CCceeeeeeeecCCCCCcHHHHHHHHcCC
Q 002090 813 DGQTVPTWKLVDGICRESLAFETAKREGV 841 (968)
Q Consensus 813 ~~~~~~~y~l~~G~~~~s~a~~~A~~~gl 841 (968)
++.+.++|++.+|.|+.|||+++|+++|+
T Consensus 171 ~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 171 DNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 99999999999999999999999999985
No 20
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.98 E-value=8.7e-32 Score=322.94 Aligned_cols=315 Identities=24% Similarity=0.295 Sum_probs=274.4
Q ss_pred eeeccccccccccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 522 WFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINI 601 (968)
Q Consensus 522 ~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~ 601 (968)
..++.+++++++. ..+..+++++|+.++.|.+.|.+|- .+..+++++.....+...++..+++++++.+.+++..
T Consensus 182 ~~r~~r~vlpvk~--~fk~~i~giv~d~sssg~tl~ieP~---~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~ 256 (753)
T COG1193 182 TTRDGREVLPVKA--EFKGAIKGIVHDTSSSGATLYIEPR---SVVKLNNELRALLVEEDEEEERILRELSALVAPVIPE 256 (753)
T ss_pred eccCCeEEeHHHH--HhhhhcCceEeecccccCeeeecch---HHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHH
Confidence 3444555655543 3567899999999999999988863 3445666777787888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCcccCccccccccCcceeEEc-CCCccccccCCCceeeeeEeec---eEEEEEecC
Q 002090 602 LVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPN 677 (968)
Q Consensus 602 L~~~~~lla~Adal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~lg---~~~~I~GpN 677 (968)
+..+...+...|.+.+.+..+....++.|.+++. ..+.+. +.||+. +..|++++.++ ..++|||||
T Consensus 257 l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~-----~~l~l~~~~HPll-----~~~v~~~i~~~~e~~~l~ITGpN 326 (753)
T COG1193 257 LEILLEIIGELDFIEAKVRYAKALKGVKPDFSND-----GVLELLDARHPLL-----KEDVPNDLELGEELDRLIITGPN 326 (753)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCC-----ceEEeccccCccC-----ccccccccccccccceeeEecCC
Confidence 9988888899999999888888899999999853 345544 556653 12288999994 689999999
Q ss_pred CCCcchHHHHHHhHHHhhhcCceeccCcC-CcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCC
Q 002090 678 GGGKSSLLRSICAASLLGICGLMVPAESA-SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEI 756 (968)
Q Consensus 678 GsGKSTllk~i~gl~~la~~g~~vp~~~~-~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp 756 (968)
.+|||+.||+++.+.+|+|+|.++|+... .+++|+.+|..+|..+++.+.+||||.+|..+..++..+. +|+++||.
T Consensus 327 ~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DEl 404 (753)
T COG1193 327 TGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDEL 404 (753)
T ss_pred CCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHh
Confidence 99999999999999999999999999765 8999999999999999999999999999999999995555 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHH
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 836 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A 836 (968)
++||||.+|++++.++++++.+.++.++.+||+.++..+......+.|..|.++ .+++.|+|++..|.+++|||+++|
T Consensus 405 g~GTdp~EgaaLai~ile~l~~~~~~~~~tTH~~elk~~~~~~~~v~nas~~fd--~etL~ptY~l~~G~~g~S~Af~ia 482 (753)
T COG1193 405 GSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKALAAEREGVENASMEFD--AETLRPTYRLLEGVPGRSNAFDIA 482 (753)
T ss_pred hcCCCcchhHHHHHHHHHHHHhcccceehHhhHHHHHHHHhcchhhhchhhhhh--HHHhhHHHHHhcCCcccchHHHHH
Confidence 999999999999999999999999999999999999988888888999988754 488999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 002090 837 KREGVPETIIQRAEDLYIA 855 (968)
Q Consensus 837 ~~~glp~~vi~rA~~~~~~ 855 (968)
.++|+|..++++|+.....
T Consensus 483 ~rlGl~~~iie~a~~~~g~ 501 (753)
T COG1193 483 LRLGLPEPIIEEAKTEFGE 501 (753)
T ss_pred HHcCCCHHHHHHHHHhcCc
Confidence 9999999999999988854
No 21
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.97 E-value=2.4e-31 Score=278.97 Aligned_cols=185 Identities=43% Similarity=0.640 Sum_probs=174.4
Q ss_pred CCceeeeeEee--ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHH
Q 002090 657 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734 (968)
Q Consensus 657 ~~~~v~~~i~l--g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~ 734 (968)
..++++||+++ |++++|+||||||||||||+|++..++++.|.++|+....++++++++.+++..+++..+.|+|+.+
T Consensus 16 ~~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e 95 (202)
T cd03243 16 GETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAE 95 (202)
T ss_pred CCceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHH
Confidence 46799999999 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEeeCC
Q 002090 735 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG 814 (968)
Q Consensus 735 ~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~ 814 (968)
++++..+++.+.+|+++|+|||++|||+.++..+.+.+++.+.+.++++|++||++++.+.+.....+.+++|......+
T Consensus 96 ~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (202)
T cd03243 96 LLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTG 175 (202)
T ss_pred HHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCC
Confidence 99999999999999999999999999999999998888998888899999999999999888877788888999888888
Q ss_pred ceeeeeeeecCCCCCcHHHHHHHHcCC
Q 002090 815 QTVPTWKLVDGICRESLAFETAKREGV 841 (968)
Q Consensus 815 ~~~~~y~l~~G~~~~s~a~~~A~~~gl 841 (968)
++.++|++.+|.+..|||+++|++.|+
T Consensus 176 ~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 176 GLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 899999999999999999999999985
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.97 E-value=9.6e-31 Score=274.00 Aligned_cols=183 Identities=30% Similarity=0.477 Sum_probs=165.6
Q ss_pred CCceeeeeEee--c-eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCc-CCcchHHHHHhhcCCCCCccCCccchH
Q 002090 657 EGSAVHNTVDM--Q-SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQ 732 (968)
Q Consensus 657 ~~~~v~~~i~l--g-~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~-~~~~~~~~i~~~~~~~d~~~~~~s~fs 732 (968)
.++++++++++ + ++++|+||||||||||||+|+...+++|.|+++|+.. ..++++++++..++..+++..+.|+||
T Consensus 14 ~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs 93 (200)
T cd03280 14 GEKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFS 93 (200)
T ss_pred CCceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHH
Confidence 46789999999 4 5899999999999999999998889999999999975 578889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEee
Q 002090 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 812 (968)
Q Consensus 733 ~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~ 812 (968)
.||+++..++..+++|+++|+|||++|||+.++..++..+++.+.+.++++|++||+.++..++++...+.++++..+
T Consensus 94 ~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~-- 171 (200)
T cd03280 94 SHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD-- 171 (200)
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe--
Confidence 999999999988999999999999999999999999888888888889999999999988887777666667766544
Q ss_pred CCceeeeeeeecCCCCCcHHHHHHHHcCC
Q 002090 813 DGQTVPTWKLVDGICRESLAFETAKREGV 841 (968)
Q Consensus 813 ~~~~~~~y~l~~G~~~~s~a~~~A~~~gl 841 (968)
.+++.++|++.+|.+++|||+++|+++|+
T Consensus 172 ~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 172 PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 57899999999999999999999999986
No 23
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=99.97 E-value=1.7e-32 Score=321.74 Aligned_cols=920 Identities=27% Similarity=0.268 Sum_probs=622.1
Q ss_pred ccccccCccc-----cccCCccccCcccHHHHHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCCCc
Q 002090 23 KYSNLLGLDV-----NLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 97 (968)
Q Consensus 23 ~~~~~lg~~~-----~~~~~~~~~~~l~~~~~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~g~~~~~~pm 97 (968)
.+.|.+|.++ +++++..|.++++ +..++|+..|...++.||+. ||.-+.|+.++++.-+.+.-++..+.+.|-
T Consensus 19 ~~~~~v~~~~~~e~k~l~~~t~k~~~~~-e~~~~~~~~~r~~~~~rv~~-~e~~~~d~~~~~~~~~~~~k~~~~sDsd~d 96 (1125)
T KOG0217|consen 19 LYRNSVGLKPKEEPKSLRNGTLKIKNLK-EKEEFKSGQPREVVSSRVKE-YEAVGDDADIVVESSSEKPKSGLDSDSDED 96 (1125)
T ss_pred hcccccccCCccchhhhcCCCcCcCccc-hhhHhhccCccccccccccc-hhhcCCCccceeeecccCCccccCCCcccc
Confidence 3668888888 8999999988888 88999999999999999999 999999999999999998887556778999
Q ss_pred cc----cCcccHHHHHHHHHHCCceEEEEeccCC--------cccCCCceeEeEeeeecCCCccccccccCCCCCCCCCC
Q 002090 98 AG----CPVVNLRQTLDDLTRNGYSVCIVEEVQG--------PTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEP 165 (968)
Q Consensus 98 aG----vP~h~~~~yl~~Lv~~G~kVaI~EQ~e~--------p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a 165 (968)
.| +|....+.-+++.+..||.|++.|+.++ +..++.+..+.|+.--+|+.+++.+.+..++.+.+...
T Consensus 97 ~g~k~~~~~~~~d~~~~D~~~~d~~~~~~ee~~~~~~~~~~~~~~~r~~~a~~v~k~~~kk~~~~~~~~~~~~~~~~~~p 176 (1125)
T KOG0217|consen 97 FGGKEVEEKEDSDEELDDETASDYEVVISEESEGGEPVCRVSDTDSRSRKAESVSKGKSKKSPSDSGAVSMGHDLDFNDP 176 (1125)
T ss_pred cCcccccccccccccccccccCCcceeccccccCCCcccccCCCcccchhcccccccccCCCCCCccccccccccccCCC
Confidence 99 9999999999999999999999999998 33344567888888888999999988888888788777
Q ss_pred cc--EEEEEcCCceEEEEEeccc----cceeEeec--CCCHHHHHHHHHcCCcceEEEcCCCccCCCCCccccccCCCCc
Q 002090 166 MP--VIGVSRSAKGYCIISILET----MKTYSLED--GLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGL 237 (968)
Q Consensus 166 ~~--~~gi~~~~~~~~~~~~~~~----~~~~~v~~--~~~~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~~~~~~ 237 (968)
++ ..+..+++.+|+.++.++. +..|.... ++..+++.+.+.|-.-.|-+.|..+.-+ ...|.+++++..
T Consensus 177 ~~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~dp~yDp~TLyiP---~s~~~kftpg~k 253 (1125)
T KOG0217|consen 177 MPLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRGDPEYDPRTLYIP---PSFWKKFTPGEK 253 (1125)
T ss_pred CccccCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCCCCCCCccceecC---HHHHhcCCchhh
Confidence 77 6777889999999999998 55555555 6678888999987544444444433211 124777777777
Q ss_pred ccccccccccc---ccCCchHHHHHHHHhHhcCCCCcccccccccccCCcccc---eeechhhhcc--cCCCCCCCccce
Q 002090 238 LWGECIARHFE---WFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRP---LHLGTATQIG--AIPTEGIPCLLK 309 (968)
Q Consensus 238 l~~~~~~~~~~---~f~~~~~~~ll~~v~~~~gl~~~~~~~~~~~~~~~~~~~---LyLd~~Tq~~--ll~~~~~~sll~ 309 (968)
.|-.+.+.+++ ||....-.++.++.+...+..-.-.|++++.++...|.. +|+++.+|+| +.+....++.+.
T Consensus 254 qwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~~~a~q~iq~GYkvarVEQtEt~l~ 333 (1125)
T KOG0217|consen 254 QWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFDYWADQFIQKGYKVARVEQTETPLG 333 (1125)
T ss_pred hhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchhhHHHHHHhccceeeeeccccChHH
Confidence 78888889998 787777677888654333332222355555445555553 7999999998 665555568888
Q ss_pred EecCCCccC----CCHHHHHhhccCCCcchHHHHHHHHHhhhhhcccCCccHH--H-----HHHHHHhccCCcccHH--H
Q 002090 310 VLLPSNCSG----LPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFT--C-----LVKLLELREANHIEFC--R 376 (968)
Q Consensus 310 ~~l~~~~~~----m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~l~~i~dlr--r-----L~~~l~~p~a~~~d~~--~ 376 (968)
..+..+++. +-+|.+++.+..++..+..-.++..++.+-++.+..++.. . ..--.+.++++..+|+ .
T Consensus 334 ~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~~~~akylmai~e~~~~~~~~~~s~gvc~iDtstge~~~~eF~DDr 413 (1125)
T KOG0217|consen 334 KEIRERKTGKKDKVVRREVCRILTNGTLTDIALLTSDLAKYLMAIKESEESYSTGEVSFGVCFIDTSTGEINIGEFCDDR 413 (1125)
T ss_pred hhhhhcccccchhhHHHHHHHHhcCCcchhHHHhccHHHHHHHHHhhcCCCCCcCceeeeEEEEEcccceEEEEEeecch
Confidence 878888888 8999999999999985555666777777777766666532 1 2233567788888999 8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHH----HHhhc-hhhhhhccCCchh--hhcccCCCc
Q 002090 377 IKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECR----LASVR-IGEMISLDGESDQ--KICSYDNIP 449 (968)
Q Consensus 377 I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~----~~~~~-i~~~i~l~~e~~~--~~~~~~~I~ 449 (968)
.++.|+.++..++.-++-.....+..+++..++...+.....+.|. +..+. .+++|.. +.... +-+...+.+
T Consensus 414 ~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwdsek~~~eii~~-dy~~~~g~e~~~sil~ 492 (1125)
T KOG0217|consen 414 HCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDSEKTGREIISE-DYFESLGLEDSPSILK 492 (1125)
T ss_pred hhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcchhhHHHHHhhh-hhhhcccccCchhhcc
Confidence 9999999999998888888888888998888888877777666665 33322 3335442 11100 000001111
Q ss_pred --h---hHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHH---hhcCchhhhhhhcccccCCCCCChhhhhhhcccce
Q 002090 450 --S---EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLA---VTEDFLPIISRIKATTAPLGGPKGEILYAREHEAV 521 (968)
Q Consensus 450 --~---~~~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~a---I~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v 521 (968)
. .+.-.....|+.+++..++.+.+-.++...+..... ...|..+++..+...-...|+....+-|..++-.+
T Consensus 493 ~p~~~~~la~safg~~~~Ylk~~~id~~llsm~n~~ey~~~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csT 572 (1125)
T KOG0217|consen 493 SPNTDKELALSAFGGLFYYLKKLLIDEELLSMKNFEEYDSLDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCST 572 (1125)
T ss_pred CCCccchhhHHHHHHHHHHHHHHhhHHHHhhhhhhhhcchhcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccC
Confidence 1 122222367888999999988888888887766655 45555566655544222446677788888877777
Q ss_pred eeeccccccccccCCCCccc--ccccccccccCCC------ccCcEEeehHHHHHHHHHHHHHHHH------HHHHHHHH
Q 002090 522 WFKGKKFRPTVWASTPGEEQ--IKQLKPAVDSKGR------KVGEEWFSTLKVEEALERYHEAGAK------AKAKVLEL 587 (968)
Q Consensus 522 ~l~~~~~~~~~~~~~~~~~~--I~~l~~~~s~~g~------~v~~e~f~T~eL~ea~~k~~~ae~~------a~~~i~ei 587 (968)
|+ |+++.. .|.-.+...+ |++........+. ++..+++.+|+++.++.|+.+.... .+.+.++.
T Consensus 573 pf-GKRllk-~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLeg 650 (1125)
T KOG0217|consen 573 PF-GKRLLK-TWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEG 650 (1125)
T ss_pred hH-HHHHHH-HHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 77 566555 4543332222 3332221112222 4455668899999999999877666 67788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhh------hccc-----CCcccCccccc---cccCccee------E
Q 002090 588 LRGLSSELQTKINILVFASMLLVIGKALFA---HVS------EGRR-----RKWVFPALKDI---ELDGANCL------K 644 (968)
Q Consensus 588 l~eL~~~L~~~i~~L~~~~~lla~Adal~~---~a~------~a~~-----~~~~~P~~~~~---~~~~~~~~------~ 644 (968)
++++...+...++.+........+...+.+ ++. .|.. ..|..|..... ...+..++ .
T Consensus 651 fk~~~~~~~~~~~v~~~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L 730 (1125)
T KOG0217|consen 651 FKEINKLLGSLINVLKEGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENEL 730 (1125)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHH
Confidence 999998888888887755544433333333 111 1111 13333322211 00011111 1
Q ss_pred EcCCCccccccCCCceeeeeEeeceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCc
Q 002090 645 MNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 724 (968)
Q Consensus 645 ~~~~~~~~~~~~~~~~v~~~i~lg~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~ 724 (968)
...+.+++..+.-...+.+++......+-+++|++|+|. ++-++-.....-.+.+.|.....++.++++-.+....++
T Consensus 731 ~~~L~~~rk~l~c~si~~~~vGk~~y~lEvP~n~~~~s~-~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~- 808 (1125)
T KOG0217|consen 731 LAYLEEYRKRLGCSSIVFVDVGKDVYQLEVPENGGVPSS-LRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLS- 808 (1125)
T ss_pred HHHHHHHHHhcCCCceeEeecCceEEEEecCcccCCCCc-hHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 112334555554455666777667889999999999999 665544445556778899988888888877665533221
Q ss_pred cCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHH----HHHHHHHHHHHHhcCcEEEEeccChhhhhcccc--
Q 002090 725 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKG----TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK-- 798 (968)
Q Consensus 725 ~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~----~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~-- 798 (968)
...+.|-..+-... +.-+++-..+..+|+.++++-...+ .... .+.+.... +...++.+|-|....+...
T Consensus 809 -d~~~r~~~~f~~~~-~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp-~i~~~~dt-~~~l~~~~~~Hpcfsl~s~~~ 884 (1125)
T KOG0217|consen 809 -DLKRRLIVRFDEHY-IIWQATVKALASIDCLLSLAETSKGLGGPMCRP-EIVESTDT-PGFLIVKGLRHPCFSLPSTGT 884 (1125)
T ss_pred -HHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc-eeecccCC-CceeEEecccCceeecCcCCC
Confidence 12222222222211 1112223344456777666655433 1111 23333222 2256778887776554333
Q ss_pred --ccccccceeEEEeeCC-ceeeeeeeecCCCCCcHHHHHHHHcC--CCHHHHHHHH--HHHHHh---------------
Q 002090 799 --IKNAAYKAMGTEYLDG-QTVPTWKLVDGICRESLAFETAKREG--VPETIIQRAE--DLYIAC--------------- 856 (968)
Q Consensus 799 --~~~~~~~~~~~~~~~~-~~~~~y~l~~G~~~~s~a~~~A~~~g--lp~~vi~rA~--~~~~~~--------------- 856 (968)
++|.....+......+ -.-|+.....+.+.+.-...+++..| +|.++++++- .|...+
T Consensus 885 ~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~v 964 (1125)
T KOG0217|consen 885 SFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFV 964 (1125)
T ss_pred ccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEE
Confidence 3443333222211112 12355555666677777888889999 9999887743 333333
Q ss_pred ----------------------------------c----cchhhhhcccCCCCcc-cCcceeEEeecC-CccccccccCc
Q 002090 857 ----------------------------------G----VNCVMIAAREQPPPSI-IGASCVYVMLRP-DKKLYIGQTDD 896 (968)
Q Consensus 857 ----------------------------------~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 896 (968)
- .++...+.+..+++++ -+..|+|+++.| ...+|.+.+.|
T Consensus 965 ELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd 1044 (1125)
T KOG0217|consen 965 ELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVD 1044 (1125)
T ss_pred eccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeec
Confidence 0 1122223445578887 888899999988 67799999999
Q ss_pred hhh-HHHhhhcccCcccceeEEEeeCCchhHHHHHHHHHhhhhhccccccccccCCCcccc
Q 002090 897 LDG-RIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFG 956 (968)
Q Consensus 897 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~l~~~~~~~~~~~~ 956 (968)
.+. +.-.||..+|.+--+..|-.+.++++.+|+.+..+++....+..+.|.+|++||+|+
T Consensus 1045 ~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~~~~d~~~r~~~ 1105 (1125)
T KOG0217|consen 1045 EEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSANAADGKIREVV 1105 (1125)
T ss_pred CCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Confidence 988 778899999998888777778899999999999999999999999999999999999
No 24
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.96 E-value=9.9e-30 Score=241.07 Aligned_cols=106 Identities=33% Similarity=0.498 Sum_probs=90.7
Q ss_pred HHHHHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCC--CCCCCCCccccCcccHHHHHHHHHHCCceEEEEe
Q 002090 46 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGG--LRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVE 123 (968)
Q Consensus 46 ~~~~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~g--~~~~~~pmaGvP~h~~~~yl~~Lv~~G~kVaI~E 123 (968)
.+|+++|++|||+|+|||+|||||+|++||+.+|+.|+++++.. ..+.++||||||.++++.|+++|+++||+|||||
T Consensus 5 ~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V~i~~ 84 (113)
T PF01624_consen 5 QQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRVAIYE 84 (113)
T ss_dssp HHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEEEEEE
Confidence 45799999999999999999999999999999999999999961 1122399999999999999999999999999999
Q ss_pred ccCCcccCCCceeEeEeeeecCCCcccc
Q 002090 124 EVQGPTQARSRKSRFISGHAHPGSPYVF 151 (968)
Q Consensus 124 Q~e~p~~ak~~v~R~v~~vvTPGT~~~~ 151 (968)
|++++...++.+.|+|++|+||||..++
T Consensus 85 q~~~~~~~~~~~~R~v~~i~TpGt~~~~ 112 (113)
T PF01624_consen 85 QVETPSETKGLIEREVTRIYTPGTLIDD 112 (113)
T ss_dssp E-S-HHHHSSS--EEEEEEEBTTS-TST
T ss_pred ecCCccccCCCccEEEEEEECcCeecCc
Confidence 9999988778999999999999996554
No 25
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3.8e-23 Score=209.25 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=123.4
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH---------------------hhhcCceeccCcCCcchH
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------LGICGLMVPAESASIPYF 711 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~---------------------la~~g~~vp~~~~~~~~~ 711 (968)
++..|+++|++ |++++|+||+|||||||||||+++.. +.+-..+|+|....+|..
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHl 92 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHL 92 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccc
Confidence 57899999999 89999999999999999999999851 112233788887776543
Q ss_pred -------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 712 -------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 712 -------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
-.++.++|+.+.....++.+|+|++|+..|+++ |.+|+++|+|||||.|||+-.
T Consensus 93 TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv 172 (240)
T COG1126 93 TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELV 172 (240)
T ss_pred hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHH
Confidence 146778899999999999999999998888877 999999999999999999877
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEE
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 809 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~ 809 (968)
..+ ..+++.|++.|.|+|++||++.++.-.. +++.+.+-+.
T Consensus 173 ~EV-L~vm~~LA~eGmTMivVTHEM~FAr~Va--drviFmd~G~ 213 (240)
T COG1126 173 GEV-LDVMKDLAEEGMTMIIVTHEMGFAREVA--DRVIFMDQGK 213 (240)
T ss_pred HHH-HHHHHHHHHcCCeEEEEechhHHHHHhh--heEEEeeCCE
Confidence 777 7778889999999999999999986432 4555554443
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.1e-22 Score=215.15 Aligned_cols=144 Identities=21% Similarity=0.234 Sum_probs=117.3
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-----------------hcCceeccCcCC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLMVPAESAS 707 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-----------------~~g~~vp~~~~~ 707 (968)
.++.+.|.++ .|+.|++| |++++|+||||||||||+|+|+|++... ....||||....
T Consensus 8 ~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~ 86 (254)
T COG1121 8 ENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV 86 (254)
T ss_pred eeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccccc
Confidence 3445556555 69999999 8999999999999999999999976211 234589985421
Q ss_pred ---c---------------------------chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 708 ---I---------------------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 708 ---~---------------------------~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
+ ..+++.+.++|+.+...+..+.+|+|++|+..++++ +++|+|+|||||
T Consensus 87 d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP 166 (254)
T COG1121 87 DRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEP 166 (254)
T ss_pred CCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCC
Confidence 1 123467788899988889999999999998888777 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
++|+|+.....| ..++..+++.|+|||++|||++.+.
T Consensus 167 ~~gvD~~~~~~i-~~lL~~l~~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 167 FTGVDVAGQKEI-YDLLKELRQEGKTVLMVTHDLGLVM 203 (254)
T ss_pred cccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCcHHhH
Confidence 999999777777 7788888877999999999998764
No 27
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.87 E-value=8.3e-22 Score=209.46 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=117.3
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCceeccCcC
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAESA 706 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~vp~~~~ 706 (968)
+.+.|. ++.+++++|| |++++|+||||||||||||+++|++ .+|+...||||...
T Consensus 8 ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~ 86 (258)
T COG1120 8 LSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPS 86 (258)
T ss_pred EEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCC
Confidence 344453 7899999999 8999999999999999999999985 25666778998742
Q ss_pred Cc--------------c--------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SI--------------P--------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~--------------~--------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.. | .++..+..++..+...+...++|+|++|++.|+++ +++|+++||||||
T Consensus 87 ~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPT 166 (258)
T COG1120 87 APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT 166 (258)
T ss_pred CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCc
Confidence 11 1 12334667788877788889999999998887766 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-hcCcEEEEeccChhhhh-cccc
Q 002090 758 RGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~-~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+.||......+ ..+++.+. ++|.|+|+++||++++. ++++
T Consensus 167 s~LDi~~Q~ev-l~ll~~l~~~~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 167 SHLDIAHQIEV-LELLRDLNREKGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred cccCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 99999999999 55555555 67999999999999875 3443
No 28
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=203.56 Aligned_cols=141 Identities=19% Similarity=0.198 Sum_probs=119.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------hcCceeccCcCCcchH-------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIPYF------- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------~~g~~vp~~~~~~~~~------- 711 (968)
+..|+.|++| |++++|+||+|||||||||+|+|+.... ....+|+|+.+.+||.
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~ 94 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVA 94 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhe
Confidence 3789999999 8999999999999999999999996321 1123778887777663
Q ss_pred -----------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002090 712 -----------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSII 773 (968)
Q Consensus 712 -----------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll 773 (968)
..++..+|..+........+|+||+|...|+++ +.+|+++|||||++.||...+..+-..++
T Consensus 95 l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~ 174 (248)
T COG1116 95 LGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174 (248)
T ss_pred ehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHH
Confidence 345666788888888889999999999888877 89999999999999999999999988888
Q ss_pred HHHHhcCcEEEEeccChhhhh-cccc
Q 002090 774 ETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 774 ~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+...+.+.|++++|||.+.+- ++++
T Consensus 175 ~lw~~~~~TvllVTHdi~EAv~LsdR 200 (248)
T COG1116 175 RLWEETRKTVLLVTHDVDEAVYLADR 200 (248)
T ss_pred HHHHhhCCEEEEEeCCHHHHHhhhCE
Confidence 888889999999999998874 4443
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.1e-20 Score=197.20 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=115.5
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH------------------------hhhcCceeccCcCCcch
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------LGICGLMVPAESASIPY 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~------------------------la~~g~~vp~~~~~~~~ 710 (968)
..++++++| |++++|+||+||||||||++|+|+.- ..+...||+|....++.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 478999998 89999999999999999999999841 12223467766554432
Q ss_pred H------------------------HHHHhhcCCCCCcc-CCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 711 F------------------------DAIMLHMKSYDSPA-DGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 711 ~------------------------~~i~~~~~~~d~~~-~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
+ ..++..+|..+... ..++.+|+|++|+..|+++ +.+|++||.||||.+||...
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 1 23455567776666 7789999999998888777 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
+..+...+.+..++.|+|+|++|||.+++..+++.-.+..+
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG 218 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDG 218 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCC
Confidence 99985555555456799999999999999988765544443
No 30
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=6.8e-21 Score=195.24 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=112.7
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH----------------hhhcCceeccCcCCcch------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------LGICGLMVPAESASIPY------ 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~----------------la~~g~~vp~~~~~~~~------ 710 (968)
+++.+++|+|| |++++++|||||||||++|+|.|++- ......|.|.++...+-
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dq 92 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHH
Confidence 67889999999 89999999999999999999999962 12233477877654321
Q ss_pred ------------------HHHHHhhcCCCCCccCCccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002090 711 ------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGS 771 (968)
Q Consensus 711 ------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~-il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ 771 (968)
.+.++.++.+.+.......++|.|++|... |.+.+++|+|+|||||+|||||.....+ ..
T Consensus 93 l~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elL-k~ 171 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL-KD 171 (300)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHH-HH
Confidence 245677888888888888999999998555 5555999999999999999999887776 55
Q ss_pred HHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 772 IIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 772 ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
.+..+++.|+||||+||.|+-++ +++
T Consensus 172 ~I~~lk~~GatIifSsH~Me~vEeLCD 198 (300)
T COG4152 172 AIFELKEEGATIIFSSHRMEHVEELCD 198 (300)
T ss_pred HHHHHHhcCCEEEEecchHHHHHHHhh
Confidence 56667889999999999998764 444
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.6e-20 Score=207.54 Aligned_cols=151 Identities=20% Similarity=0.207 Sum_probs=114.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP----- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~----- 709 (968)
++.+++++|| |++++++||||||||||||+++|++.. .+...|+|+.....+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~ 96 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR 96 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHH
Confidence 5899999999 899999999999999999999999721 112346777654321
Q ss_pred -------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 710 -------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 710 -------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
.++.++..++..+......++||.||+|...++.+ +.+|+|+||||||+||||..+..+
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~- 175 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI- 175 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH-
Confidence 23456677787764456688999999997766554 899999999999999999888887
Q ss_pred HHHHHHHHhcC-cEEEEeccChhhhhc-cccccccccceeEE
Q 002090 770 GSIIETLDNIG-CLGIVSTHLHGIFSL-PLKIKNAAYKAMGT 809 (968)
Q Consensus 770 ~~ll~~l~~~g-~~vl~~TH~~el~~~-~~~~~~~~~~~~~~ 809 (968)
+.+++.+++.| .||+++||.++.++. +++..-+..+.+..
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence 67777777766 899999999987764 44443444444433
No 32
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.83 E-value=3.2e-20 Score=184.03 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=117.7
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH-----------------------HhhhcCceecc
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-----------------------LLGICGLMVPA 703 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~-----------------------~la~~g~~vp~ 703 (968)
+...|.++..+++|+|| |+++-|+||+|||||||||+|.+.. ++.+....|+|
T Consensus 7 V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQ 86 (223)
T COG2884 7 VSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQ 86 (223)
T ss_pred hhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEee
Confidence 33456677779999999 8999999999999999999999985 22222335666
Q ss_pred CcCCcch------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 704 ESASIPY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 704 ~~~~~~~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
+...++. +...+..+|..+....-++.+|+|.||...|+++ +.+|.++|.||||.
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTG 166 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTG 166 (223)
T ss_pred eccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCC
Confidence 5433211 2345667788888888899999999998888877 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
++||.....| ..+++.+...|+||+++|||.++.+..
T Consensus 167 NLDp~~s~~i-m~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 167 NLDPDLSWEI-MRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred CCChHHHHHH-HHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 9999988888 778888899999999999999997643
No 33
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.7e-20 Score=190.94 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=120.6
Q ss_pred cccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH------------------------HhhhcCceeccC
Q 002090 653 FDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS------------------------LLGICGLMVPAE 704 (968)
Q Consensus 653 ~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~------------------------~la~~g~~vp~~ 704 (968)
..|++++.++++|+| |++++|+||+|||||||||+|+|++ ...++| ++.|.
T Consensus 11 k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG-mIfQ~ 89 (258)
T COG3638 11 KTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG-MIFQQ 89 (258)
T ss_pred eecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce-eEecc
Confidence 345688999999999 8999999999999999999999985 234455 45554
Q ss_pred cCCcch-----------------HH---------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEE
Q 002090 705 SASIPY-----------------FD---------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLV 751 (968)
Q Consensus 705 ~~~~~~-----------------~~---------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~Ll 751 (968)
...++. +. ..++++|+.+......+++|+|++|+..|+++ +++|+++
T Consensus 90 ~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiI 169 (258)
T COG3638 90 FNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKII 169 (258)
T ss_pred CCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEE
Confidence 433211 11 24567788777778889999999999888877 8999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccceeE
Q 002090 752 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 808 (968)
Q Consensus 752 LlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~~ 808 (968)
|.|||+++|||.....++..+.+.-.+.|.|+|+..|+.+++. ++++...+..+.+.
T Consensus 170 LADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred ecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 9999999999999888866666655678999999999999984 55555554444443
No 34
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=3e-20 Score=191.19 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=110.9
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH------------------------hhhcCceeccCcCCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------LGICGLMVPAESASI 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~------------------------la~~g~~vp~~~~~~ 708 (968)
+++.|+++++| |++++|+||+|+|||||||+|.|+.. ..++| +++|..+.+
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G-vlFQ~gALF 97 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMG-VLFQQGALF 97 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhee-EEeeccccc
Confidence 67899999999 89999999999999999999999851 12233 455655443
Q ss_pred c---hHHHH----------------------HhhcCCCCC-ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 709 P---YFDAI----------------------MLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 709 ~---~~~~i----------------------~~~~~~~d~-~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
. .++++ +..+|.... ....+|.+|+||++.+.++++ +.+|+|+++||||+|||
T Consensus 98 ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLD 177 (263)
T COG1127 98 SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177 (263)
T ss_pred cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 2 22221 123466555 567789999999998887776 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hcCcEEEEeccChhhh-hccccccccccceeE
Q 002090 762 TAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 808 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~-~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~~ 808 (968)
|.....+ ..++..++ .-|.|++++|||.+.+ ..+++..-+.++++.
T Consensus 178 PI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 178 PISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred cchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 9887777 55555555 4699999999998765 344544444444443
No 35
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.81 E-value=8.3e-20 Score=203.57 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=111.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcch---H
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY---F 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~~---~ 711 (968)
+..+++++|| |++++|+||||||||||+|+|+|+... .+...|+|++....+. .
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVR 98 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHH
Confidence 4679999999 899999999999999999999998521 1223467776433221 1
Q ss_pred ---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 712 ---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 712 ---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
+.++..++..+......+++|.||+|...++++ +.+|+++||||||+||||.....+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l- 177 (306)
T PRK13537 99 ENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM- 177 (306)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH-
Confidence 123344566555566778999999997766655 899999999999999999888887
Q ss_pred HHHHHHHHhcCcEEEEeccChhhhh-ccccccccccceeE
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 808 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~~ 808 (968)
+.+++.+++.|.|+|++||+++.++ ++++...+..+.+.
T Consensus 178 ~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 178 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 5666667777999999999998764 55554444444443
No 36
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.4e-20 Score=186.34 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=110.4
Q ss_pred ccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCce-------------------eccCcCC---
Q 002090 654 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM-------------------VPAESAS--- 707 (968)
Q Consensus 654 ~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~-------------------vp~~~~~--- 707 (968)
.+.....++.|+|| |++++|.|||||||||+||+|+.++...+.-.. ++.+...
T Consensus 10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~R 89 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYAR 89 (245)
T ss_pred hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhh
Confidence 33333457899999 899999999999999999999999754432111 1111100
Q ss_pred ------cch---------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 708 ------IPY---------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 708 ------~~~---------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
+.+ ...+..++++.+.+......||.||+|...|+++ +.+|++++||||++|||....
T Consensus 90 lT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~ 169 (245)
T COG4555 90 LTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169 (245)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHH
Confidence 011 1234455666777777778999999998888777 899999999999999999777
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhh-cccccccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNA 802 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~ 802 (968)
..+ ..++.++++.|.+|||+||.++.++ ++++..-+
T Consensus 170 r~~-~dfi~q~k~egr~viFSSH~m~EvealCDrvivl 206 (245)
T COG4555 170 RKF-HDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL 206 (245)
T ss_pred HHH-HHHHHHhhcCCcEEEEecccHHHHHHhhheEEEE
Confidence 766 8888889989999999999998766 65544333
No 37
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=7.1e-20 Score=189.04 Aligned_cols=142 Identities=17% Similarity=0.161 Sum_probs=111.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCceeccCcCCcch---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAESASIPY--- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~vp~~~~~~~~--- 710 (968)
++.++++++| |++++++||+||||||+||+|+.++ .+.+...||-|....+|.
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 6789999999 8999999999999999999999996 122222244333333222
Q ss_pred ---------------------HHHHHhhcCCC--CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 711 ---------------------FDAIMLHMKSY--DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 711 ---------------------~~~i~~~~~~~--d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
.++++..++.. +...+.++.+|+|++|..-++++ |.+|.++||||||+++||..+.
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~ 172 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence 24566677775 35677889999999998887776 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
.+-..+.+.-++.|+|+||+|||++.+ .++++.
T Consensus 173 ~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri 206 (309)
T COG1125 173 QLQEEIKELQKELGKTIVFVTHDIDEALKLADRI 206 (309)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceE
Confidence 996666666667899999999999886 455543
No 38
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.81 E-value=1.2e-19 Score=204.54 Aligned_cols=156 Identities=19% Similarity=0.113 Sum_probs=113.7
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcC
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESA 706 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~ 706 (968)
++...+ +++.+++++|| |++++|+||||||||||||+|+|+... .+...++|+...
T Consensus 46 nl~k~y-~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~ 124 (340)
T PRK13536 46 GVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN 124 (340)
T ss_pred EEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCcc
Confidence 333334 35679999999 899999999999999999999998521 122346676543
Q ss_pred Ccc---hH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 707 SIP---YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 707 ~~~---~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
..+ .. +.++..++..+.......++|+||+|...++.+ +.+|+++||||||+|||
T Consensus 125 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD 204 (340)
T PRK13536 125 LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204 (340)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 221 11 123445566665667778999999997776655 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccccccccccee
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
|..+..+ +.++..+.+.|.|+|++||+++.+ +++++...+..+.+
T Consensus 205 ~~~r~~l-~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i 250 (340)
T PRK13536 205 PHARHLI-WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRK 250 (340)
T ss_pred HHHHHHH-HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 9888888 555556666799999999999876 45655444444443
No 39
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.80 E-value=1.8e-19 Score=200.89 Aligned_cols=147 Identities=16% Similarity=0.176 Sum_probs=109.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcch----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~~---- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++.
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4678999998 899999999999999999999998521 1123466765432211
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
++.++..++..+......+++|+||+|...++++ +.+|+++||||||+||||.....+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l- 163 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI- 163 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-
Confidence 1234556677666677788999999997776655 899999999999999999887777
Q ss_pred HHHHHHHHhcCcEEEEeccChhhhh-ccccccccccc
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 805 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~ 805 (968)
+.+++.+++.|.|+|++||+++.+. ++++...+..+
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 5566666667999999999998764 45544333333
No 40
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=2.4e-19 Score=188.64 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=105.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------hhcCceeccCcC--Cc--c----
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLMVPAESA--SI--P---- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------a~~g~~vp~~~~--~~--~---- 709 (968)
+.++++++| |++++|+||||||||||||+|+|+... .+...|+|+... .. .
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 678999998 899999999999999999999998521 112336666531 10 1
Q ss_pred -------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002090 710 -------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIET 775 (968)
Q Consensus 710 -------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~ 775 (968)
.+..++..++..+........+|+||+|...++++ +.+|+++||||||+|||+.....+ ..+++.
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 171 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIRE 171 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHH
Confidence 12234556677666667778999999997777655 889999999999999999887777 555666
Q ss_pred HHhcCcEEEEeccChhhhh-cccc
Q 002090 776 LDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 776 l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+++.|.++|++||+++.+. ++++
T Consensus 172 ~~~~~~tii~~sH~~~~~~~~~d~ 195 (205)
T cd03226 172 LAAQGKAVIVITHDYEFLAKVCDR 195 (205)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCE
Confidence 6566899999999998764 4443
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.80 E-value=2e-19 Score=190.97 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=103.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCcc-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~~- 709 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 579999998 899999999999999999999998511 112345565432211
Q ss_pred -----------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 -----------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 -----------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.++.++..++..+.......++|+|++|...++++ +.+|+++||||||+|||+...
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 11234455666655666778899999997776655 899999999999999999887
Q ss_pred HHHHHHHHHHHHh-cCcEEEEeccChhhhhccc
Q 002090 766 TCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 766 ~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~ 797 (968)
..+ ..+++.+.+ .|.++|++||+.+....++
T Consensus 177 ~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d 208 (218)
T cd03255 177 KEV-MELLRELNKEAGTTIVVVTHDPELAEYAD 208 (218)
T ss_pred HHH-HHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 777 555555554 6899999999998765433
No 42
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.80 E-value=2.3e-19 Score=190.37 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=104.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP-- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~-- 709 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 469999998 899999999999999999999998511 122346666543221
Q ss_pred -hH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 710 -YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 710 -~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
.. ..++..++..+.......++|+|++|...++++ +.+|+++||||||+|||+....
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 11 123445566666666778999999997776665 8999999999999999998888
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
.+. .++..+++.|.++|++||+.+++. +++
T Consensus 176 ~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 176 DIM-RLFEEFNRRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred HHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 884 455556666899999999998764 444
No 43
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.4e-19 Score=188.68 Aligned_cols=141 Identities=17% Similarity=0.192 Sum_probs=103.8
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------hhcCceeccCcCCcc---h------
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------GICGLMVPAESASIP---Y------ 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------a~~g~~vp~~~~~~~---~------ 710 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 578999998 899999999999999999999998521 112235666532211 1
Q ss_pred ---------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002090 711 ---------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIE 774 (968)
Q Consensus 711 ---------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~ 774 (968)
+..++..++..+......+.+|+|++|...++++ +.+|+++||||||+|||+.....+...+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 1223445566555666778999999997776655 899999999999999999888888555544
Q ss_pred HHHhcCcEEEEeccChhhh-hccccc
Q 002090 775 TLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 775 ~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
..++.|.++|++||+.+.+ ..+++.
T Consensus 177 ~~~~~~~tiii~sH~~~~~~~~~d~i 202 (220)
T cd03293 177 IWRETGKTVLLVTHDIDEAVFLADRV 202 (220)
T ss_pred HHHHcCCEEEEEecCHHHHHHhCCEE
Confidence 4345689999999999864 444443
No 44
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.79 E-value=4.5e-19 Score=187.76 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=102.8
Q ss_pred cCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCC
Q 002090 655 AAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESAS 707 (968)
Q Consensus 655 ~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~ 707 (968)
+.+++.++++++| |++++|+||||||||||+|+|+|+... .+...++|++...
T Consensus 10 ~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 89 (214)
T cd03292 10 YPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRL 89 (214)
T ss_pred eCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchh
Confidence 3334579999998 899999999999999999999998511 1123466665432
Q ss_pred cc---h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 708 IP---Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 708 ~~---~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
++ . +..++..++..+.......++|+|++|...++++ +.+|+++||||||+|+|+
T Consensus 90 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 169 (214)
T cd03292 90 LPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169 (214)
T ss_pred ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 21 1 1223444566555556677899999997776655 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
.....+ ..+++.+.+.|.++|++||+.+.+.
T Consensus 170 ~~~~~~-~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 170 DTTWEI-MNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 887777 4444555556899999999988764
No 45
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.79 E-value=4e-19 Score=184.69 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=101.4
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcC--Cc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA--SI 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~--~~ 708 (968)
+++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+... .+
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 35678999998 899999999999999999999998521 111246666531 11
Q ss_pred --ch---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 709 --PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 709 --~~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
.. +..++..+++.+......+++|+|++|...++++ +.+|+++||||||+|+|+..
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11 1223445566666667778999999997776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
...+ ..+++.+++.|.++|++||+.++
T Consensus 163 ~~~~-~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 163 REQM-LAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHH-HHHHHHHHHcCCEEEEEeecccc
Confidence 7877 55555566668999999999875
No 46
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.79 E-value=4.2e-19 Score=182.90 Aligned_cols=139 Identities=15% Similarity=0.194 Sum_probs=105.2
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC-----------cCCcchHHHHHhhcCCCCC
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-----------SASIPYFDAIMLHMKSYDS 723 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~-----------~~~~~~~~~i~~~~~~~d~ 723 (968)
+.++++++| |++++|+||||||||||+|+|+|+... ..|...... ...+.++.+++..++..+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 568999998 899999999999999999999998532 233221110 0123444446777788777
Q ss_pred ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEeccChhhh-hccccc
Q 002090 724 PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 724 ~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~vl~~TH~~el~-~~~~~~ 799 (968)
+......+|+|++|...++++ +.+|+++||||||+|+|+.....+ ..+++.++++ +.++|++||+.+.. +++++.
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~ 168 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL-LELLRRLARERGKTVVMVLHDLNLAARYADRV 168 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 777788999999997776655 899999999999999999887777 4555555554 89999999999876 455543
No 47
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.4e-19 Score=180.92 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=109.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH---------------------------HhhhcCceeccCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS---------------------------LLGICGLMVPAES 705 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~---------------------------~la~~g~~vp~~~ 705 (968)
+++.++++|++ +++++++||+|||||||||++..+. .+.+-..+|+|..
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 57889999999 7999999999999999999999873 1222223577665
Q ss_pred CCcc--hHHHHHhh---------------------c----CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 706 ASIP--YFDAIMLH---------------------M----KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 706 ~~~~--~~~~i~~~---------------------~----~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
..+| ++|++..- . .+.|.+......+|+|++|+..|++. |.+|+++||||||
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 5443 22322110 0 23345556666799999998777766 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEE
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 810 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~ 810 (968)
|+|||.....| ..++..|++ .-|||++||.+..+.... +...+.+++..
T Consensus 178 SALDPIsT~kI-EeLi~eLk~-~yTIviVTHnmqQAaRvS--D~taFf~~G~L 226 (253)
T COG1117 178 SALDPISTLKI-EELITELKK-KYTIVIVTHNMQQAARVS--DYTAFFYLGEL 226 (253)
T ss_pred cccCchhHHHH-HHHHHHHHh-ccEEEEEeCCHHHHHHHh--HhhhhhcccEE
Confidence 99999999988 777777774 689999999998876533 33444445443
No 48
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.79 E-value=5.1e-19 Score=187.32 Aligned_cols=136 Identities=22% Similarity=0.241 Sum_probs=102.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4678999998 899999999999999999999998511 112345666532221
Q ss_pred --h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 --~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
. +..++..++..+........+|+|++|...+++. +.+|+++||||||+|+|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 1 1223445566655666678899999997776665 899999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
..+ ..+++.+++.|.++|++||+.+.+.
T Consensus 174 ~~l-~~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 174 ERI-LDLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred HHH-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 887 4445455566899999999988764
No 49
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.9e-19 Score=187.20 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=103.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc---h-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~---~- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 4578999998 899999999999999999999998521 011235666542211 1
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
++.++..++..+........+|+|++|...++++ +.+|+++||||||+|+|+.....+.
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 1233445566655566678899999997776655 8999999999999999998877774
Q ss_pred HHHHHHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 770 GSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 770 ~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
.+++.+.+ .|.++|++||+.+.+. .+++.
T Consensus 172 -~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i 202 (220)
T cd03265 172 -EYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202 (220)
T ss_pred -HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 44444544 4899999999998754 44443
No 50
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.79 E-value=6.6e-19 Score=186.10 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=101.7
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC-Cc---ch
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---PY 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~-~~---~~ 710 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .+ ..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 578999998 899999999999999999999998521 112346666531 11 11
Q ss_pred H---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 711 F---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 711 ~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
. ..++..++..+.+....+.+|+|++|...++++ +.+|+++||||||+|||+.....+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 124445566655667778999999997776655 899999999999999999888888
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
.. +++.+.+.|.++|++||+.+.+.
T Consensus 174 ~~-~l~~~~~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 174 LE-LLKKLKAEGKTIIIVTHDLDLLL 198 (211)
T ss_pred HH-HHHHHHHcCCEEEEEeCCHHHHH
Confidence 54 44455555899999999998764
No 51
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=9.8e-20 Score=181.75 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=116.3
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcC-ceeccCcCCcc--
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICG-LMVPAESASIP-- 709 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g-~~vp~~~~~~~-- 709 (968)
+++.|.+++|| |+++++.||||+||||.+-+|.|++ .-|+.| .|+||+...+.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 57889999999 8999999999999999999999996 124555 48888865432
Q ss_pred -h-----------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 -Y-----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 -~-----------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. ++.++..+...........++|+|.++...|+++ +.+|+++|||||++|.||..
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 1 2244455555544455667889999998888776 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChh-hhhcccccccccccee
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHG-IFSLPLKIKNAAYKAM 807 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~e-l~~~~~~~~~~~~~~~ 807 (968)
-..| ..++.+|+++|.-|+++-|+.. ...++++.--+..+++
T Consensus 175 V~dI-q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~v 217 (243)
T COG1137 175 VIDI-QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKV 217 (243)
T ss_pred HHHH-HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeE
Confidence 8888 9999999999999999999864 4455555433333333
No 52
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=7.3e-19 Score=186.06 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=102.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcc---h--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---Y-- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~---~-- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++ .
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 3578999998 899999999999999999999998521 011235666532211 1
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
+..++..++..+........+|+|++|...++++ +.+|+++||||||+|||+.....+.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~- 170 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR- 170 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 1123445566555566678899999997776665 8999999999999999998888874
Q ss_pred HHHHHHHh-cCcEEEEeccChhhh-hcccc
Q 002090 771 SIIETLDN-IGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 771 ~ll~~l~~-~g~~vl~~TH~~el~-~~~~~ 798 (968)
.++..+.+ .|.++|++||+.+++ +++++
T Consensus 171 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 171 EELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred HHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 44445544 589999999998865 34443
No 53
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5.6e-19 Score=187.81 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=121.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH-----------------------HhhhcCceeccCcCCcc--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-----------------------LLGICGLMVPAESASIP-- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~-----------------------~la~~g~~vp~~~~~~~-- 709 (968)
..+++|+|| |++++|+|.+|||||||+|+|.++. ...|...+++|....+.
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 568999999 8999999999999999999999984 12233345666554321
Q ss_pred ----------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 710 ----------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 710 ----------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
.+..++..+|..|.....++.+|+|++|+..|+++ |.+|+++|.||+||.|||....
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 12356677899999999999999999999988877 9999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEeeCCcee
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTV 817 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (968)
.|...+.+.-++.|.|++++||.|+..+. .++++..++-+...+.|++.
T Consensus 179 sIL~LL~~In~~lglTIvlITHEm~Vvk~--ic~rVavm~~G~lvE~G~v~ 227 (339)
T COG1135 179 SILELLKDINRELGLTIVLITHEMEVVKR--ICDRVAVLDQGRLVEEGTVS 227 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEEechHHHHHH--HhhhheEeeCCEEEEeccHH
Confidence 99666666556789999999999998753 23344444334334444433
No 54
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.79 E-value=5.9e-19 Score=196.78 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=107.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc---hH
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---YF 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~---~~ 711 (968)
++.++++++| |++++|+||||||||||||+|+|+... .+...|+|+.....+ ..
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVR 95 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHH
Confidence 4679999999 899999999999999999999998521 112336666543221 11
Q ss_pred H---------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 712 D---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 712 ~---------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
+ .++..++..+......+++|+||+|...++++ +.+|+++||||||+|||+.....+
T Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l- 174 (303)
T TIGR01288 96 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI- 174 (303)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-
Confidence 1 23344555555566678899999997776655 899999999999999999888877
Q ss_pred HHHHHHHHhcCcEEEEeccChhhhh-ccccccccccc
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 805 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~ 805 (968)
+.+++.+++.|.|+|++||+++.+. ++++...+..+
T Consensus 175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 175 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 5555556667999999999998764 55544333333
No 55
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.79 E-value=9.8e-19 Score=186.12 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=102.7
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------h-hcCceeccCcCCcc-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G-ICGLMVPAESASIP- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a-~~g~~vp~~~~~~~- 709 (968)
+.++++++| |++++|+||||||||||+|+|+|+... . +...|+|+....++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 468999998 899999999999999999999998410 0 22346666532221
Q ss_pred --h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 --~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
. +..++..++..+.......++|+|++|...+++. +.+|+++||||||+|||+...
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 1 1234445566665667778999999997776665 899999999999999999888
Q ss_pred HHHHHHHHHHHH-hcCcEEEEeccChhhhhcc
Q 002090 766 TCIAGSIIETLD-NIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 766 ~~i~~~ll~~l~-~~g~~vl~~TH~~el~~~~ 796 (968)
..+. .++..+. +.|.++|++||+++.....
T Consensus 178 ~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~ 208 (221)
T TIGR02211 178 KIIF-DLMLELNRELNTSFLVVTHDLELAKKL 208 (221)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 8874 4555554 4589999999999876543
No 56
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=7.9e-19 Score=189.34 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=102.2
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP-- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~-- 709 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 679999998 899999999999999999999998521 012345665532211
Q ss_pred -hHH-----------------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 710 -YFD-----------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 710 -~~~-----------------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
..+ .++..++..+.......++|+|++|...++++ +.+|+++||||||+
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 111 23344455555556677899999997776655 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-cccc
Q 002090 759 GTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~ 798 (968)
|+|+.....+ ..+++.+.+ .|.++|++||+++.+. ++++
T Consensus 174 ~LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 174 SLDPASSRQV-MDLLKRINREEGITVIVSLHQVDLAREYADR 214 (241)
T ss_pred cCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 9999887777 455555544 5899999999998765 4443
No 57
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.4e-19 Score=188.55 Aligned_cols=148 Identities=17% Similarity=0.121 Sum_probs=111.9
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------hcCceeccC
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------ICGLMVPAE 704 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------~~g~~vp~~ 704 (968)
.+++.+.++..+++++++ |+.++|+||||||||||+++++|++... +...+|.|.
T Consensus 8 ~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQn 87 (235)
T COG1122 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQN 87 (235)
T ss_pred EEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEEC
Confidence 344555555789999999 8999999999999999999999996322 112244443
Q ss_pred cCCc-------------------------chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 705 SASI-------------------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 705 ~~~~-------------------------~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
.... ..++.....++..+.......++|+|++|+..|+.. |.+|+++||||||+
T Consensus 88 pd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta 167 (235)
T COG1122 88 PDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167 (235)
T ss_pred cccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCC
Confidence 2110 112345667788888888999999999997777665 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc-CcEEEEeccChhhhhc-ccc
Q 002090 759 GTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSL-PLK 798 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~-g~~vl~~TH~~el~~~-~~~ 798 (968)
||||.....+ ..++..+++. |.|+|++|||++.+.. +++
T Consensus 168 ~LD~~~~~~l-~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~ 208 (235)
T COG1122 168 GLDPKGRREL-LELLKKLKEEGGKTIIIVTHDLELVLEYADR 208 (235)
T ss_pred CCCHHHHHHH-HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCE
Confidence 9999887777 5666666655 7999999999988653 443
No 58
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=6.7e-19 Score=199.73 Aligned_cols=150 Identities=16% Similarity=0.106 Sum_probs=112.4
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch----
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~---- 710 (968)
+++.++++++| |++++|+||||||||||||+|+|+... .....|||+....++.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 45679999998 899999999999999999999998521 1123467776544321
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
++.++..+++.+.......++|+|++|...++++ +.+|+++|||||+++||+..+..+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1234555677766777788999999998777666 8999999999999999999988886
Q ss_pred HHHHHHHHhcCcEEEEeccChhhh-hccccccccccce
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
..+.+..++.|.|+|++||+.+.+ .++++...+..+.
T Consensus 175 ~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 175 LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 555554445599999999998765 4555544433333
No 59
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1e-18 Score=187.91 Aligned_cols=141 Identities=23% Similarity=0.245 Sum_probs=103.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 4578999998 899999999999999999999998521 111236666532221
Q ss_pred --hH----------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 --YF----------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 --~~----------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
.. ..++..++..+......+.+|+|++|...++++ +.+|+++||||||+|||+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 11 123444566555566678899999997776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 765 GTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 765 ~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
...+ ..+++.+.+ .|.++|++||+++.+. ++++.
T Consensus 172 ~~~l-~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v 207 (235)
T cd03261 172 SGVI-DDLIRSLKKELGLTSIMVTHDLDTAFAIADRI 207 (235)
T ss_pred HHHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhcCEE
Confidence 7777 444555554 5899999999998754 44443
No 60
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.78 E-value=7.8e-19 Score=189.65 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=102.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 4578999998 899999999999999999999998511 112345666532221
Q ss_pred --hH-----------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 710 --YF-----------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 710 --~~-----------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.. ..++..++..+........+|+|++|...++++ +.+|+++||||||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 11 123344455555556677899999997776665 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-hcCcEEEEeccChhhh-hcccc
Q 002090 758 RGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~-~~g~~vl~~TH~~el~-~~~~~ 798 (968)
+|+|+.....+ ..+++.+. +.|+++|++||+.+.+ ++++.
T Consensus 174 ~~LD~~~~~~l-~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 174 ASLDPKTSKQV-MDYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred ccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 99999887777 45555554 4589999999999876 34443
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.78 E-value=1.1e-18 Score=196.50 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=109.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP-- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~-- 709 (968)
..+++|+|| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 479999999 899999999999999999999999511 112346776643321
Q ss_pred -h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 710 -Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 710 -~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
. +..++..+++.+......+.+|+|++|...++++ +++|+++|+||||+|||+....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 1 1234556677777778889999999998877766 8999999999999999998888
Q ss_pred HHHHHHHHHHHh-cCcEEEEeccChhhh-hcccccc
Q 002090 767 CIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIK 800 (968)
Q Consensus 767 ~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~~ 800 (968)
.+ ..+++.+++ .|.|+|++||+++.+ +++++..
T Consensus 178 ~i-~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~ 212 (343)
T TIGR02314 178 SI-LELLKEINRRLGLTILLITHEMDVVKRICDCVA 212 (343)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 88 555555554 599999999999986 4455443
No 62
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.78 E-value=1.4e-18 Score=189.03 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=106.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------hcCceeccCcCCcc---h-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIP---Y----- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------~~g~~vp~~~~~~~---~----- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+....++ .
T Consensus 24 ~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHH
Confidence 4679999998 8999999999999999999999985211 11235666543221 1
Q ss_pred ----------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 002090 711 ----------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779 (968)
Q Consensus 711 ----------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~ 779 (968)
+..++..+++.+......+.+|+|++|...+++. +.+|+++||||||+|||+.....+...+.+..++.
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 183 (257)
T PRK11247 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH 183 (257)
T ss_pred hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1234555677666667778999999997776655 89999999999999999988877755554444556
Q ss_pred CcEEEEeccChhhh-hccccc
Q 002090 780 GCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 780 g~~vl~~TH~~el~-~~~~~~ 799 (968)
|.++|++||+.+.+ ..+++.
T Consensus 184 ~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 184 GFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 89999999999875 445544
No 63
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.78 E-value=8.9e-19 Score=200.73 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=111.3
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccCcCCc---c
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASI---P 709 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~~~~~---~ 709 (968)
+++.++++++| |++++|+||||||||||||+|+|++. .++...++|++.... .
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 35789999999 89999999999999999999999851 112234566653321 1
Q ss_pred h-------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 710 Y-------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 710 ~-------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
. ++.++..+++.+........+|+|++|...++++ +.+|+++||||||+|||+.
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 1 1234455676666667778999999998777666 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
....+ ..+++.+.+.|.|+|++||+++++ +++++.-.+.++
T Consensus 174 ~~~~l-~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 174 HQVRT-LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 88888 566666666789999999999987 455554433333
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.8e-18 Score=185.75 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=103.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCcc-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~~- 709 (968)
..++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 479999999 899999999999999999999998510 012346666532211
Q ss_pred --h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 --~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
. +..++..++..+........+|+|++|...+++. +.+|+++||||||+|||+...
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 1 1234455666665666778899999997776655 899999999999999999887
Q ss_pred HHHHHHHHHHHHh-cCcEEEEeccChhhhhcc
Q 002090 766 TCIAGSIIETLDN-IGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 766 ~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~ 796 (968)
..+ ..+++.+++ .|.++|++||+.+.+...
T Consensus 182 ~~l-~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 182 DSI-FQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHH-HHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 777 555555554 689999999999886643
No 65
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=9.5e-19 Score=192.30 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=110.3
Q ss_pred ccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC--C
Q 002090 654 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA--S 707 (968)
Q Consensus 654 ~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~--~ 707 (968)
.+.+++.++++++| |++++|+||||||||||+++|+|+... .+...|+|+... .
T Consensus 13 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (274)
T PRK13647 13 RYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQV 92 (274)
T ss_pred EeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhh
Confidence 33334679999999 899999999999999999999998521 112346666531 1
Q ss_pred c--ch---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 708 I--PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 708 ~--~~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
. .. ++.++..++..+........+|+|++|...++++ +.+|+++||||||+|||+.
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~ 172 (274)
T PRK13647 93 FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172 (274)
T ss_pred ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHH
Confidence 1 11 1233445566655666778999999998777665 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
....+ ..+++.+++.|+|+|++||+++.+ +.+++...+.++
T Consensus 173 ~~~~l-~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 173 GQETL-MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred HHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 88888 555555665699999999999976 456554443333
No 66
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.78 E-value=1.4e-18 Score=183.27 Aligned_cols=141 Identities=19% Similarity=0.242 Sum_probs=104.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcc---h--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---Y-- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~---~-- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++ .
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 4579999998 899999999999999999999998521 112336666543221 1
Q ss_pred ---------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002090 711 ---------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIE 774 (968)
Q Consensus 711 ---------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~ 774 (968)
++.++..++..+........+|+|++|...+++. +.+|+++||||||+|||+.....+ ..+++
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 170 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL-RELIL 170 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-HHHHH
Confidence 1223445555555566677899999997766555 889999999999999999888877 45555
Q ss_pred HHHhcCcEEEEeccChhhhh-ccccc
Q 002090 775 TLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 775 ~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
.+++.|.++|++||+.+.+. .+++.
T Consensus 171 ~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 171 SLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred HHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 56557899999999998764 44433
No 67
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-18 Score=191.24 Aligned_cols=144 Identities=14% Similarity=0.123 Sum_probs=106.0
Q ss_pred cCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcC--C
Q 002090 655 AAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA--S 707 (968)
Q Consensus 655 ~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~--~ 707 (968)
+.+++.++++++| |++++|+||||||||||||+|+|+... .....++|+... .
T Consensus 11 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (274)
T PRK13644 11 YPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQF 90 (274)
T ss_pred cCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhc
Confidence 3334569999999 899999999999999999999998511 111235665432 1
Q ss_pred c--ch---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 708 I--PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 708 ~--~~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
. .. +..++..+++.+........+|+||+|...++++ +.+|+++||||||+|+|+.
T Consensus 91 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~ 170 (274)
T PRK13644 91 VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170 (274)
T ss_pred ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 11 1123344566555566778899999998777665 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
....+ ..+++.+++.|.|+|++||+++.+..+++.
T Consensus 171 ~~~~l-~~~l~~l~~~g~til~~tH~~~~~~~~d~v 205 (274)
T PRK13644 171 SGIAV-LERIKKLHEKGKTIVYITHNLEELHDADRI 205 (274)
T ss_pred HHHHH-HHHHHHHHhCCCEEEEEecCHHHHhhCCEE
Confidence 87777 555656666799999999999987654433
No 68
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.7e-18 Score=182.85 Aligned_cols=140 Identities=20% Similarity=0.267 Sum_probs=102.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------hhcCceeccCcCCcc---h----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------GICGLMVPAESASIP---Y---- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------a~~g~~vp~~~~~~~---~---- 710 (968)
++.++++++| |++++|+||||||||||+++|+|+... .....|+|+....++ .
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 4578999988 899999999999999999999998521 111235666532211 1
Q ss_pred -----------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 002090 711 -----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSI 772 (968)
Q Consensus 711 -----------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~l 772 (968)
+.+++..++...........+|+|++|...+++. +.+|+++||||||+|+|+.....+. .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~-~~ 170 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK-DV 170 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HH
Confidence 1223344555544556667899999997766555 8999999999999999998877774 45
Q ss_pred HHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 773 IETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 773 l~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
++.+.+.|.++|++||+.+.+. ++++
T Consensus 171 l~~~~~~~~tii~~sH~~~~~~~~~d~ 197 (210)
T cd03269 171 IRELARAGKTVILSTHQMELVEELCDR 197 (210)
T ss_pred HHHHHHCCCEEEEECCCHHHHHHhhhE
Confidence 5556666899999999998753 4443
No 69
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.78 E-value=1.2e-18 Score=187.46 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=103.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~--- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .....|+|+....++
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 4568999888 899999999999999999999998511 011235666532211
Q ss_pred h-------------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 710 Y-------------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 710 ~-------------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
. +.+++..++..+......+++|+|++|...+++. +.+|+++||||||
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0 1223344566555566778899999997776655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|+|+.....+ ..+++.+.+.|.++|++||+.+.+. .+++.
T Consensus 172 ~~LD~~~~~~l-~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i 213 (236)
T cd03219 172 AGLNPEETEEL-AELIRELRERGITVLLVEHDMDVVMSLADRV 213 (236)
T ss_pred ccCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 99999887777 4555555657899999999998764 44443
No 70
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=1.2e-18 Score=197.23 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=113.1
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------h----hhcCceeccCcCCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------L----GICGLMVPAESASI 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------l----a~~g~~vp~~~~~~ 708 (968)
+++.++++++| |++++|+||||||||||+|+|+|+.. + .+...|+|+....+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 45678999999 89999999999999999999999961 1 22345777765443
Q ss_pred ch------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 ~~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
+. +..++..+++..........+|+||+|...++++ +.+|+++||||||+||||.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 21 1234556677666777888999999998777665 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
.+..+...+.+...+.|.|+|++||+++.+ .++++...+..+
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G 206 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAG 206 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 988885555554345689999999999875 555554443333
No 71
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.6e-18 Score=186.07 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=103.5
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc---
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP--- 709 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~--- 709 (968)
.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 78999988 899999999999999999999999511 122346666543221
Q ss_pred hH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 710 YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 710 ~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
.. ..++..++..+......+++|+|++|...++++ +.+|+++||||||+|+|+.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 11 223444566555566778899999987776655 89999999999999999988887
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhhh-ccccccc
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKN 801 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~ 801 (968)
+...+.+...+.|.++|++||+.+.+. .+++.-.
T Consensus 179 l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~ 213 (233)
T cd03258 179 ILALLRDINRELGLTIVLITHEMEVVKRICDRVAV 213 (233)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 744444433345899999999998753 4554433
No 72
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.77 E-value=1.9e-18 Score=184.84 Aligned_cols=137 Identities=17% Similarity=0.143 Sum_probs=101.4
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCcc--
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP-- 709 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~~-- 709 (968)
.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 58999988 899999999999999999999998510 012345666532211
Q ss_pred -hH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 710 -YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 710 -~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
.. ..++..++..+.+......+|+|++|...+++. +.+|+++||||||+|||+....
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 11 123344555555566678899999997776665 8999999999999999998877
Q ss_pred HHHHHHHHHHH-hcCcEEEEeccChhhhhccc
Q 002090 767 CIAGSIIETLD-NIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 767 ~i~~~ll~~l~-~~g~~vl~~TH~~el~~~~~ 797 (968)
.+ ..+++.++ +.|.++|++||+.++.+.++
T Consensus 184 ~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d 214 (228)
T PRK10584 184 KI-ADLLFSLNREHGTTLILVTHDLQLAARCD 214 (228)
T ss_pred HH-HHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 77 44454554 45899999999998765443
No 73
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.77 E-value=5.6e-19 Score=195.87 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=114.9
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCcchH---
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPYF--- 711 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~~~~--- 711 (968)
++..+++|+|+ |+++.++|||||||||+||+|||+.... +...+|+|+.+.+|+.
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence 47889999999 8999999999999999999999996221 2224677777776543
Q ss_pred ----------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 712 ----------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 712 ----------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
.+.+..+++.+...+..+.+|+|++|...++++ +.+|.++|||||.++||..-+..+
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~m 175 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHH
Confidence 123344566666667778899999998777666 899999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhh-hcccccc
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIK 800 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~ 800 (968)
...+.+..++.|.|+|++|||.+.+ .+.++..
T Consensus 176 r~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~ 208 (352)
T COG3842 176 RKELKELQRELGITFVYVTHDQEEALAMSDRIA 208 (352)
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHhhhccceE
Confidence 8888888888899999999999876 3444433
No 74
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.77 E-value=1.5e-18 Score=196.56 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=114.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY----- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~----- 710 (968)
+..++++++| |++++|+||||||||||||+|+|+... .+...++|+....++.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~e 95 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVAD 95 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHH
Confidence 4568999988 899999999999999999999999521 1223467776554432
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
++.++..+++.+........+|+|++|...++++ +.+|+++|||||++|||+..+..+..
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~ 175 (353)
T TIGR03265 96 NIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRT 175 (353)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 2235556677777778888999999998777666 89999999999999999999888866
Q ss_pred HHHHHHHhcCcEEEEeccChhhh-hcccccccccccee
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
.+.+...+.|.|+|++||+.+.+ .++++...+..+.+
T Consensus 176 ~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 176 EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 66555555699999999999875 45665444444443
No 75
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=2e-18 Score=176.73 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=89.9
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc---------------------eeccCcCCcchHHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL---------------------MVPAESASIPYFDA 713 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~---------------------~vp~~~~~~~~~~~ 713 (968)
..++++++| |++++|+||||||||||+++|+|+.... .|. |++++...++
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~---- 89 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDPNELGDHVGYLPQDDELFS---- 89 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCHHHHHhheEEECCCCcccc----
Confidence 468899888 8999999999999999999999985322 221 2222211111
Q ss_pred HHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 714 i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
....+++ +|+|++|...++++ +.+|+++||||||+|+|+.....+ ..+++.+++.|.++|++||+.+.
T Consensus 90 ----~tv~~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 90 ----GSIAENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL-NQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred ----CcHHHHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHH
Confidence 0111111 88999987776655 899999999999999999888887 45555566668999999999987
Q ss_pred hhccc
Q 002090 793 FSLPL 797 (968)
Q Consensus 793 ~~~~~ 797 (968)
...++
T Consensus 159 ~~~~d 163 (173)
T cd03246 159 LASAD 163 (173)
T ss_pred HHhCC
Confidence 65433
No 76
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.77 E-value=2.5e-18 Score=184.94 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=103.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------------------hcCceeccCcCCc---chH
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASI---PYF 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------------------~~g~~vp~~~~~~---~~~ 711 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+....+ ...
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 4678999998 8999999999999999999999985210 1233666653221 111
Q ss_pred ---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 712 ---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 712 ---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
..++..++..+........+|+|++|...++++ +.+|+++||||||+|+|+.....+.
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~ 172 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 223445566655667778899999997766655 8999999999999999998888885
Q ss_pred HHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
..+.+..++.|.++|++||+.+.+..++
T Consensus 173 ~~l~~~~~~~~~tiii~sH~~~~~~~~d 200 (236)
T TIGR03864 173 AHVRALCRDQGLSVLWATHLVDEIEADD 200 (236)
T ss_pred HHHHHHHHhCCCEEEEEecChhhHhhCC
Confidence 5444433346899999999998876443
No 77
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.77 E-value=1.5e-18 Score=186.04 Aligned_cols=141 Identities=21% Similarity=0.201 Sum_probs=102.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~--- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 4578999988 899999999999999999999998521 011235665532211
Q ss_pred hH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 710 YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 710 ~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
.. +.++..++..+........+|+|++|...++++ +.+|+++||||||+|||+.....
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 11 123444555555566677899999997766655 89999999999999999988777
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+ ..+++.+.+.|.++|++||+.+.+ ..+++.
T Consensus 172 ~-~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 203 (232)
T cd03218 172 I-QKIIKILKDRGIGVLITDHNVRETLSITDRA 203 (232)
T ss_pred H-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 7 555556666789999999998654 444443
No 78
>PRK10908 cell division protein FtsE; Provisional
Probab=99.77 E-value=1.9e-18 Score=184.11 Aligned_cols=137 Identities=21% Similarity=0.249 Sum_probs=103.0
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP 709 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~ 709 (968)
+++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 13 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 34678999998 899999999999999999999998511 112346666543211
Q ss_pred ---h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 ---Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 ---~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. +..++..++..+......+++|+|++|...++++ +.+|+++||||||+|||+..
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172 (222)
T ss_pred cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 1 1134445566555566778899999997776665 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
...+.. +++.+++.+.++|++||+++++.
T Consensus 173 ~~~l~~-~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 173 SEGILR-LFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred HHHHHH-HHHHHHHCCCEEEEEeCCHHHHH
Confidence 888754 55555666899999999998765
No 79
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.77 E-value=1.5e-18 Score=184.48 Aligned_cols=139 Identities=20% Similarity=0.210 Sum_probs=101.9
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc---h--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y-- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~---~-- 710 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++ .
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 679999998 899999999999999999999998521 111235665432211 1
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
++.++..++..+.......++|+|++|...+++. +.+|+++||||||+|+|+.....+ .
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l-~ 173 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI-W 173 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH-H
Confidence 1233445566555556678899999987776654 899999999999999999887777 4
Q ss_pred HHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
.+++.+++ +.|+|++||+++.+. .+++.
T Consensus 174 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~i 202 (220)
T cd03263 174 DLILEVRK-GRSIILTTHSMDEAEALCDRI 202 (220)
T ss_pred HHHHHHhc-CCEEEEEcCCHHHHHHhcCEE
Confidence 55555555 589999999998764 44433
No 80
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.77 E-value=1.8e-18 Score=183.09 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=102.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCc---ch--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASI---PY-- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~---~~-- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...++|+....+ ..
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 3578999998 8999999999999999999999985210 1123556543221 11
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
++.++..++..+.......++|+|++|...++++ +.+|+++||||||+|+|+.....+..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1233455566655666778899999997766655 89999999999999999988887744
Q ss_pred HHHHHHHh-cCcEEEEeccChhhhh-cccc
Q 002090 771 SIIETLDN-IGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 771 ~ll~~l~~-~g~~vl~~TH~~el~~-~~~~ 798 (968)
+++.+.+ .|+|+|++||+.+.+. .+++
T Consensus 172 -~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 172 -ELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 4444544 5899999999987654 4443
No 81
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.77 E-value=2.4e-18 Score=191.61 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=109.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcch----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~~---- 710 (968)
++.++++++| |++++|+||||||||||||+|+|+... .+...|+|+.....+.
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~ 93 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVR 93 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHH
Confidence 5679999999 899999999999999999999998511 1223466765432211
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
++.++..++..+......+.+|+||+|...++++ +.+|+++||||||+|||+.....+
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l- 172 (301)
T TIGR03522 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI- 172 (301)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-
Confidence 1234445666666667778999999997766655 899999999999999999887777
Q ss_pred HHHHHHHHhcCcEEEEeccChhhh-hcccccccccccee
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
+.+++.+++ +.|+|++||+++.+ +++++...+..+.+
T Consensus 173 ~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 173 RNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred HHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 555666665 79999999999865 45665444444433
No 82
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.77 E-value=2.1e-18 Score=182.51 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=102.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcCCcc--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESASIP-- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~~~~-- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 3578899888 899999999999999999999998521 112345666543221
Q ss_pred -hH----------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 -YF----------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 -~~----------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.. ..++..++....+.....++|+|++|...+++. +.+|+++||||||+|+|+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 11 123344566555566778899999997776655 899999999999999999877
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
..+ ..+++.+++.|.++|++||+.+... +++
T Consensus 172 ~~l-~~~l~~~~~~~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 172 GEV-LDVMKDLAEEGMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred HHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 777 5556566666899999999988763 444
No 83
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.77 E-value=2.2e-18 Score=181.40 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=102.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCcc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~~ 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 4578999998 899999999999999999999998521 012234555432211
Q ss_pred ---h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 ---Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 ---~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. +..++..+++.+........+|+|+++...++++ +.+|+++||||||+|+|+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 1 1234455566655666778899999987776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhhcc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
...+ ..+++.+.+.|.++|++||+.++...+
T Consensus 170 ~~~l-~~~l~~~~~~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 170 RDEV-LDLLLELNDEGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 8877 455555555689999999999876543
No 84
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.77 E-value=1.8e-18 Score=182.97 Aligned_cols=140 Identities=21% Similarity=0.222 Sum_probs=102.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------hhcCceeccCcCC-----cchH--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------GICGLMVPAESAS-----IPYF-- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------a~~g~~vp~~~~~-----~~~~-- 711 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+.... ....
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 3568999988 899999999999999999999998521 1123466665321 1111
Q ss_pred -----------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 712 -----------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 712 -----------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
..++..++..+.......++|+|++|...++++ +.+|+++||||||+|||+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 123344555555566678899999997776655 89999999999999999988888
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+...+ ..+++.|.++|++||+.+.+. .+++
T Consensus 171 l~~~l-~~~~~~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 171 IYELL-RELRREGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred HHHHH-HHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 85544 445557899999999998763 4443
No 85
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.77 E-value=1.9e-18 Score=176.53 Aligned_cols=133 Identities=18% Similarity=0.187 Sum_probs=98.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc-----eeccC----cCCcchHHHHHhhcCCCC-C
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-----MVPAE----SASIPYFDAIMLHMKSYD-S 723 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~-----~vp~~----~~~~~~~~~i~~~~~~~d-~ 723 (968)
.+.+++++|| |++++|+||||||||||||++.+- .|. ..+.. ...++. .+.+..++... .
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~~~q-~~~l~~~~L~~~~ 80 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIFIDQ-LQFLIDVGLGYLT 80 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEEEhH-HHHHHHcCCCccc
Confidence 3578899988 899999999999999999998521 111 01100 011111 34667777765 3
Q ss_pred ccCCccchHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 724 PADGKSSFQVEMSEIRSIVTA-TTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 724 ~~~~~s~fs~~~~~~~~il~~-a~~--~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
+.....++|.++++...++++ +.+ |+++|||||++|+|+.....+.. +++.+++.|.++|++||++++...++
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~~g~tvIivSH~~~~~~~~d 156 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIEHNLDVLSSAD 156 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 677788999999997776665 788 99999999999999988888754 44455567999999999998866544
No 86
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.3e-18 Score=189.25 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=107.7
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcC--Cc--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA--SI-- 708 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~--~~-- 708 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 469999999 899999999999999999999998511 112346777531 11
Q ss_pred ch---------------------HHHHHhhcCCC--CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 709 PY---------------------FDAIMLHMKSY--DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 709 ~~---------------------~~~i~~~~~~~--d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
.. ++.++..+++. +........+|+||+|...++++ +.+|+++||||||+|||+..
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 11 12344556765 34566778999999998777666 89999999999999999988
Q ss_pred HHHHHHHHHHHHHh-cCcEEEEeccChhhh-hccccccccccc
Q 002090 765 GTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 765 ~~~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
...+ ..+++.+++ .|.|+|++||+++.+ .++++...+..+
T Consensus 180 ~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G 221 (287)
T PRK13637 180 RDEI-LNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221 (287)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 8888 555555554 589999999999876 455544333333
No 87
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.4e-18 Score=188.67 Aligned_cols=142 Identities=17% Similarity=0.116 Sum_probs=104.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASI 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~ 708 (968)
+++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 35678999998 899999999999999999999998511 01234566653322
Q ss_pred c---h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 P---Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 ~---~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
+ . +..++..+++.+.+......+|+|++|...++++ +.+|+++||||||+|||+.
T Consensus 115 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~ 194 (269)
T cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194 (269)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 1 1 1123445566666667778899999997776655 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~ 798 (968)
....+...+.+...+.|.++|++||+++.+ .++++
T Consensus 195 ~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 195 IRREMQDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 888774444443344589999999999865 34443
No 88
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=2.5e-18 Score=174.09 Aligned_cols=121 Identities=36% Similarity=0.478 Sum_probs=98.3
Q ss_pred eeeeeEeec--eEEEEEecCCCCcchHHHHHHhHHHhhh----------cCceeccCcCCcchHHHHHhhcCCCCCccCC
Q 002090 660 AVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGI----------CGLMVPAESASIPYFDAIMLHMKSYDSPADG 727 (968)
Q Consensus 660 ~v~~~i~lg--~~~~I~GpNGsGKSTllk~i~gl~~la~----------~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~ 727 (968)
.+++++.+. .+++|||||||||||++|+++.+..+++ .|.++|+....+ ++..++
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----i~~~~~-------- 77 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----IFTRLQ-------- 77 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----ehheee--------
Confidence 578889984 4999999999999999999999999998 888888876554 333332
Q ss_pred ccchHHHHHH---HHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 728 KSSFQVEMSE---IRSIVTATT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 728 ~s~fs~~~~~---~~~il~~a~--~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
+|.++++ ++.++..+. +|+++|+|||++|||+.++..+...+.+++.+ ++++|++||++++...++
T Consensus 78 ---lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d 148 (162)
T cd03227 78 ---LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELAD 148 (162)
T ss_pred ---ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhh
Confidence 4444555 444454444 89999999999999999999999998888777 899999999999987654
No 89
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.5e-18 Score=194.59 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=112.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCcch---H-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPY---F- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~~~---~- 711 (968)
+..++++++| |++++|+||||||||||||+|+|+.... +...+++++.+.++. .
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~e 97 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGE 97 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHH
Confidence 4678999998 8999999999999999999999996211 122367776554432 1
Q ss_pred --------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 712 --------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 712 --------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
+.+...+++.+........+|+|++|...++++ +.+|+++|||||++|||+..+..+..
T Consensus 98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~ 177 (351)
T PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE 177 (351)
T ss_pred HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 124445566666667788999999998777665 89999999999999999999998855
Q ss_pred HHHHHHHhcCcEEEEeccChhhh-hcccccccccccee
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
.+.+...+.|.|+|++|||.+.+ .++++...+.++.+
T Consensus 178 ~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 178 KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 55544445699999999999876 56665544444443
No 90
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.2e-18 Score=196.75 Aligned_cols=147 Identities=19% Similarity=0.146 Sum_probs=108.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY----- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~----- 710 (968)
++.++++++| |++++|+||||||||||||+|+|+... .+...|+|++...++.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 4578999998 899999999999999999999998521 1113466766443321
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
+..++..+++.+.......++|+|++|...++++ +.+|+++||||||+|||+.....+..
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~ 174 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1234455666666677778999999997776665 89999999999999999988888855
Q ss_pred HHHHHHHhcCcEEEEeccChhhh-hcccccccccc
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAY 804 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~ 804 (968)
.+.+...+.|.|+|++||+.+.+ .++++...+.+
T Consensus 175 ~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 55444444589999999999865 45554433333
No 91
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.76 E-value=2.8e-18 Score=182.21 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=102.5
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc---h---
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y--- 710 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~---~--- 710 (968)
.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++ .
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 68999988 899999999999999999999998521 112235666542211 1
Q ss_pred ------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002090 711 ------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGS 771 (968)
Q Consensus 711 ------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ 771 (968)
+++++..++..+........+|+|++|...++++ +.+|+++||||||+|+|+.....+ ..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~ 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL-RE 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHH-HH
Confidence 1224445566555666777899999997776655 899999999999999999887777 55
Q ss_pred HHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 772 IIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 772 ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+++.+.+.|.++|++||+.+.+. .+++
T Consensus 178 ~l~~~~~~~~tii~~tH~~~~~~~~~d~ 205 (218)
T cd03266 178 FIRQLRALGKCILFSTHIMQEVERLCDR 205 (218)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhcCE
Confidence 55556666899999999998653 4443
No 92
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.76 E-value=2.4e-18 Score=183.16 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=101.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcch--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPY-- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~~-- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 4578999998 899999999999999999999998521 1123466665432211
Q ss_pred -HH-------------------HHHhhc-CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 711 -FD-------------------AIMLHM-KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 711 -~~-------------------~i~~~~-~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
.+ .++..+ +..+........+|+|++|...++++ +.+|+++||||||+|||+.....+
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 171 (222)
T cd03224 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171 (222)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence 11 122233 23344455667899999997776655 889999999999999999888877
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
..+++.+.+.|+|+|++||+.+.+ ..+++.
T Consensus 172 -~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 202 (222)
T cd03224 172 -FEAIRELRDEGVTILLVEQNARFALEIADRA 202 (222)
T ss_pred -HHHHHHHHHCCCEEEEEeCCHHHHHHhccEE
Confidence 445555666789999999999864 444443
No 93
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.7e-18 Score=183.73 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=108.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcchH
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPYF 711 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~~~ 711 (968)
+...+++||++ |+.++++|||||||||+||+|||+... .....||.|+.+.++..
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccc
Confidence 34567778887 899999999999999999999999621 11223566655544321
Q ss_pred ---HH-----------------------HHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 712 ---DA-----------------------IMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 712 ---~~-----------------------i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
++ ++.-+...+--...+..+|+|++|+..+.++ +.+|+++|||||+++||..-
T Consensus 93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~v 172 (345)
T COG1118 93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172 (345)
T ss_pred hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHH
Confidence 22 2222333333344556788999997776665 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccceeEEE
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGTE 810 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~~~~ 810 (968)
+..+-..+.+...+.|.+++|+|||.+.+ +++++...+.++.+...
T Consensus 173 r~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 173 RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred HHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 88885444444445599999999999876 45665555555554443
No 94
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.6e-18 Score=191.19 Aligned_cols=139 Identities=20% Similarity=0.180 Sum_probs=111.2
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcchH---H---
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPYF---D--- 712 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~~---~--- 712 (968)
+++++++ |++++|+||||||||||||+|||+.-. .+...+|+|..+.+|.. +
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 9999998 899999999999999999999999621 12334778877766542 2
Q ss_pred ------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002090 713 ------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSII 773 (968)
Q Consensus 713 ------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll 773 (968)
.+...+++.+.+.+..+.+|+|++|...+.++ +.+|+++|||||.|+||..-+..+...+.
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~ 177 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence 23445577777888899999999998877766 89999999999999999999999866666
Q ss_pred HHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 774 ETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 774 ~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+.-++.|.|+|++|||...+. ++++.
T Consensus 178 ~lh~~l~~T~IYVTHDq~EAmtladri 204 (338)
T COG3839 178 KLHERLGTTTIYVTHDQVEAMTLADRI 204 (338)
T ss_pred HHHHhcCCcEEEEcCCHHHHHhhCCEE
Confidence 644557999999999986654 45443
No 95
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.7e-18 Score=185.08 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=101.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCcc---hH-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---YF- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~~---~~- 711 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+....++ ..
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 4679999998 8999999999999999999999985210 11235565432211 11
Q ss_pred ------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 712 ------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 712 ------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
..++..++..+.......++|+||+|...++++ +.+|+++||||||+|+|+....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 123344455544556667899999997776665 8999999999999999998877
Q ss_pred HHHHHHHHHHHh-cCcEEEEeccChhhh-hcccc
Q 002090 767 CIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 767 ~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~ 798 (968)
.+ ..+++.+++ .|+|+|++||+.+.+ ..+++
T Consensus 174 ~l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 206 (239)
T cd03296 174 EL-RRWLRRLHDELHVTTVFVTHDQEEALEVADR 206 (239)
T ss_pred HH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 77 455555554 489999999998864 34443
No 96
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.1e-18 Score=192.87 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=106.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 3579999999 899999999999999999999998511 122346676543221
Q ss_pred --hH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 --YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 --~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.. ..++..+++.+......+++|+|++|...++++ +.+|+++||||||+|||+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 11 234455666666667778999999997777665 899999999999999999888
Q ss_pred HHHHHHHHHHHH-hcCcEEEEeccChhhhh-ccccccc
Q 002090 766 TCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKN 801 (968)
Q Consensus 766 ~~i~~~ll~~l~-~~g~~vl~~TH~~el~~-~~~~~~~ 801 (968)
..+. .+++.+. +.|.|+|++||+++.+. ++++.-.
T Consensus 177 ~~l~-~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 177 RSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAV 213 (343)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 8874 4445554 45899999999998754 4554433
No 97
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.4e-18 Score=188.37 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=105.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC-Cc---c
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---P 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~-~~---~ 709 (968)
.+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .+ .
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 3569999999 899999999999999999999999521 112346666431 11 1
Q ss_pred h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 710 Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 710 ~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
. +..++..+++.+.+......+|+|+++...++++ +.+|+|+||||||+|||+.....
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 2234455577666777788999999997777665 89999999999999999988888
Q ss_pred HHHHHHHHHHh-cCcEEEEeccChhhhhcccc
Q 002090 768 IAGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 768 i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~ 798 (968)
+ ..+++.+.+ .|.|+|++||+++.+..+++
T Consensus 179 l-~~~l~~l~~~~~~tilivsH~~~~~~~~d~ 209 (279)
T PRK13635 179 V-LETVRQLKEQKGITVLSITHDLDEAAQADR 209 (279)
T ss_pred H-HHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence 7 555555555 48999999999998764443
No 98
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.1e-18 Score=187.83 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=104.9
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC-Cc---ch
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---PY 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~-~~---~~ 710 (968)
..++++++| |++++|+||||||||||+|+|+|+... .+...++|+... .+ ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 469999999 899999999999999999999998511 112346666531 11 11
Q ss_pred ---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 711 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 711 ---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
+..++..+++.+.......++|+|++|...++++ +.+|+++||||||+|||+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 179 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 1234455566666677778999999987776655 899999999999999999887777
Q ss_pred HHHHHHHHHh-cCcEEEEeccChhhhhccccc
Q 002090 769 AGSIIETLDN-IGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 769 ~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~~ 799 (968)
..+++.+++ .|.|+|++||+++.+..+++.
T Consensus 180 -~~~l~~l~~~~g~tilivtH~~~~~~~~dri 210 (279)
T PRK13650 180 -IKTIKGIRDDYQMTVISITHDLDEVALSDRV 210 (279)
T ss_pred -HHHHHHHHHhcCCEEEEEecCHHHHHhCCEE
Confidence 555555554 599999999999887654433
No 99
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.76 E-value=3.7e-18 Score=193.48 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=109.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY----- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~----- 710 (968)
+..++++++| |++++|+||||||||||||+|+|+... .+...|+|++...++.
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHH
Confidence 4579999998 899999999999999999999998521 1123366665433321
Q ss_pred -----------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 711 -----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 711 -----------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
+..++..+++.+........+|+|++|...++++ +.+|+++|||||++|||+....
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 1234455666666667778999999998777666 8999999999999999999888
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccce
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
.+...+.+..++.|.|+|++||+++.+ .++++...+..+.
T Consensus 174 ~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 174 ELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGN 214 (353)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 885555554444589999999999875 4555443333333
No 100
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=2e-18 Score=169.10 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=127.8
Q ss_pred eEEcCCCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH----------------hhhcCceec
Q 002090 643 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------LGICGLMVP 702 (968)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~----------------la~~g~~vp 702 (968)
+.++++|.- -|...|++++|+ |+++.|+|.+|||||||||||..+.. ....|..+|
T Consensus 7 l~v~dlHK~----~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 7 LEVEDLHKR----YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred eehhHHHhh----cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 444556542 156789999999 89999999999999999999998842 223344445
Q ss_pred cCcCCc-----------------c-------------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHH
Q 002090 703 AESASI-----------------P-------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS 740 (968)
Q Consensus 703 ~~~~~~-----------------~-------------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~ 740 (968)
++...+ + ....++..+|+.+........+|+|++|.+.
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~a 162 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVA 162 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHH
Confidence 432211 0 0123456678888777888899999999888
Q ss_pred HHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEeeCCceeee
Q 002090 741 IVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 819 (968)
Q Consensus 741 il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (968)
|.++ +.+|+++|+|||||.|||+---.+ ..+++.|++.|.|++++||.+.++.-. ...+.+.|-+..++.|.+...
T Consensus 163 IARaLameP~vmLFDEPTSALDPElVgEV-Lkv~~~LAeEgrTMv~VTHEM~FAR~V--ss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 163 IARALAMEPEVMLFDEPTSALDPELVGEV-LKVMQDLAEEGRTMVVVTHEMGFARDV--SSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHHHHhcCCceEeecCCcccCCHHHHHHH-HHHHHHHHHhCCeEEEEeeehhHHHhh--hhheEEeecceecccCChHHH
Confidence 8776 899999999999999999766665 678888999999999999999997643 345677777777666665444
Q ss_pred e
Q 002090 820 W 820 (968)
Q Consensus 820 y 820 (968)
|
T Consensus 240 f 240 (256)
T COG4598 240 F 240 (256)
T ss_pred h
Confidence 3
No 101
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.1e-18 Score=184.68 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=102.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhc-CceeccCcCCcc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC-GLMVPAESASIP--- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~-g~~vp~~~~~~~--- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+. ..|+|+....++
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 4679999998 899999999999999999999999511 011 224565432211
Q ss_pred hH------------------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 710 YF------------------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 710 ~~------------------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
.. ..++..++..+........+|+|++|...++++ +.+|+++|
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11 112334555555566677899999997776655 89999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhh-hcccc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~ 798 (968)
|||||+|||+.....+ ..++..+++ .|+++|++||+.+.+ +.+++
T Consensus 177 lDEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 177 LDEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred EcCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 9999999999888877 555555655 489999999999876 34443
No 102
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.76 E-value=3.3e-18 Score=194.24 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=110.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh--------------------cCceeccCcCCcch---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CGLMVPAESASIPY--- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~--------------------~g~~vp~~~~~~~~--- 710 (968)
+..++++++| |++++|+||||||||||||+|+|+..... ...++++....++.
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence 4579999998 89999999999999999999999863322 12356665443321
Q ss_pred ---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 711 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 711 ---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
++.++..+++.+.......++|+|++|...++++ +.+|+++|||||++|||+..+..+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 1234556677777778888999999998777666 899999999999999999998888
Q ss_pred HHHHHHHHHhc--CcEEEEeccChhhh-hccccccccccc
Q 002090 769 AGSIIETLDNI--GCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 769 ~~~ll~~l~~~--g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
...+ +.+.+. |.|+|++||+++.+ .++++...+..+
T Consensus 177 ~~~l-~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 177 REEI-AALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred HHHH-HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5554 445544 89999999999875 455544433333
No 103
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.4e-18 Score=188.29 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=108.0
Q ss_pred ccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC--C
Q 002090 654 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA--S 707 (968)
Q Consensus 654 ~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~--~ 707 (968)
.+.++..++++++| |++++|+||||||||||+|+|+|+... .+...++|+... .
T Consensus 12 ~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (277)
T PRK13652 12 SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91 (277)
T ss_pred EeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccc
Confidence 33334569999999 899999999999999999999998511 111245666531 1
Q ss_pred c--ch---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 708 I--PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 708 ~--~~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
. .. .+.++..+++.+........+|+|+++...++++ +.+|+++||||||+|+|+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~ 171 (277)
T PRK13652 92 FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171 (277)
T ss_pred ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 11 1233444566666667778899999997776655 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHh-cCcEEEEeccChhhh-hccccccccccc
Q 002090 764 KGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
....+ ..+++.+.+ .|.|+|++||+++.+ +.+++...+..+
T Consensus 172 ~~~~l-~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 172 GVKEL-IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 88877 455555554 489999999999876 455554333333
No 104
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.76 E-value=3.6e-18 Score=194.58 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=112.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch---H-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---F- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~---~- 711 (968)
+..++++++| |++++|+||||||||||||+|+|+... .+...++++..+.++. .
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 105 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE 105 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHH
Confidence 4578999888 899999999999999999999998621 1123466766544322 1
Q ss_pred --------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 712 --------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 712 --------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
+.++..+++.+.......++|+|++|...++++ +.+|+++|||||++|||+..+..+..
T Consensus 106 Ni~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~ 185 (375)
T PRK09452 106 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQN 185 (375)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 234445577666777788999999998777665 89999999999999999998888855
Q ss_pred HHHHHHHhcCcEEEEeccChhhh-hcccccccccccee
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
.+.+..++.|.|+|++|||.+.+ .++++...+.++.+
T Consensus 186 ~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 186 ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 55555555699999999999875 45665544444443
No 105
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=5.4e-18 Score=171.78 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=90.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC-c-CCcchHHHHHhhcCCCCCccCCccch
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-S-ASIPYFDAIMLHMKSYDSPADGKSSF 731 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~-~-~~~~~~~~i~~~~~~~d~~~~~~s~f 731 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... .|...-.. . ...+..+.....++. ...+
T Consensus 12 ~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qL 83 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFASPRDARRAGIAM-------VYQL 83 (163)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcCCHHHHHhcCeEE-------EEec
Confidence 4578999998 8999999999999999999999875332 23211111 0 001111111111111 1228
Q ss_pred HHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccc
Q 002090 732 QVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 732 s~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~ 798 (968)
|.+++|...++++ +.+|+++||||||+|+|+.....+ ..+++.+.+.|.|+|++||+++.+ +.+++
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~~~~~~~d~ 151 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERL-FKVIRRLRAQGVAVIFISHRLDEVFEIADR 151 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 9999987776655 899999999999999999888877 555555566689999999998854 44443
No 106
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4e-18 Score=185.38 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=102.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------hcCceeccCcCCcc---h-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIP---Y----- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------~~g~~vp~~~~~~~---~----- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... ....|+|+....++ .
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHH
Confidence 4578999998 8999999999999999999999986211 01235665532211 1
Q ss_pred ----------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002090 711 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSII 773 (968)
Q Consensus 711 ----------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll 773 (968)
+..++..++..+........+|+|++|...+++. +.+|+++||||||+|||+.....+ ..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L 171 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTLL 171 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHH
Confidence 1234445566555566678899999997776655 889999999999999999887777 4445
Q ss_pred HHH-HhcCcEEEEeccChhhhh-cccc
Q 002090 774 ETL-DNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 774 ~~l-~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+.+ ++.|+++|++||+.+.+. .+++
T Consensus 172 ~~~~~~~g~tviivsH~~~~~~~~~d~ 198 (255)
T PRK11248 172 LKLWQETGKQVLLITHDIEEAVFMATE 198 (255)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 555 446899999999998753 4443
No 107
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=4.4e-18 Score=174.15 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=90.1
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcC--------------------ceeccCcCCcchHHHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG--------------------LMVPAESASIPYFDAI 714 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g--------------------~~vp~~~~~~~~~~~i 714 (968)
..++++++| |++++|+||||||||||+|+++|+.... .| .|+|++...+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~------ 85 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLY------ 85 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccchHhhhccEEEEecCCccc------
Confidence 468999998 8999999999999999999999985321 12 1233322111
Q ss_pred HhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 715 ~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
..+...+++. +|+|++|...++++ +.+|+++||||||+|+|+.....+ ..+++.+.++|.++|++||+.+++
T Consensus 86 -~~~tv~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 86 -ENLTVRENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF-WELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred -cCCcHHHHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHCCCEEEEECCCHHHH
Confidence 1111112111 88899887766655 899999999999999999888888 455555555589999999998876
Q ss_pred h-ccc
Q 002090 794 S-LPL 797 (968)
Q Consensus 794 ~-~~~ 797 (968)
. .++
T Consensus 159 ~~~~d 163 (173)
T cd03230 159 ERLCD 163 (173)
T ss_pred HHhCC
Confidence 5 444
No 108
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=9.2e-19 Score=181.36 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=104.3
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCce-eccC---cCCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLM-VPAE---SASI 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~-vp~~---~~~~ 708 (968)
|+-.++||+|| |++++|+|||||||||++++|.|+... ++.|.. .+|. ...+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 67889999999 899999999999999999999998521 111210 0000 0000
Q ss_pred ch---------------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 709 PY---------------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 709 ~~---------------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
.. ...++..+|..+.......+++.+.+++..|.++ |++|+|+|||
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD 174 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEec
Confidence 11 1234555677776777777888898887777665 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
||.+|+++.+...++ .+++.+++ .|.|++++-||++++. ++++.
T Consensus 175 EPaAGln~~e~~~l~-~~i~~i~~~~g~tillIEHdM~~Vm~l~dri 220 (250)
T COG0411 175 EPAAGLNPEETEELA-ELIRELRDRGGVTILLIEHDMKLVMGLADRI 220 (250)
T ss_pred CccCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEEeccHHHhhhccEE
Confidence 999999999999994 55555665 6799999999999864 44443
No 109
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.75 E-value=7e-18 Score=183.06 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=103.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------------hhcCceeccCc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------------GICGLMVPAES 705 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------------a~~g~~vp~~~ 705 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+..
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 4578999998 899999999999999999999998521 01123566553
Q ss_pred CCcc---hH----------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 706 ASIP---YF----------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 706 ~~~~---~~----------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
..++ .. ..++..++..+......+++|+|++|...+++. +.+|+++||||||+|
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 2221 11 123344465555566678899999997776655 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
||+.....+ ..+++.+.+.|.++|++||+.+.+. ++++.
T Consensus 175 LD~~~~~~l-~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i 214 (250)
T PRK11264 175 LDPELVGEV-LNTIRQLAQEKRTMVIVTHEMSFARDVADRA 214 (250)
T ss_pred CCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 999887777 5556666666899999999998763 44443
No 110
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.75 E-value=8.4e-18 Score=179.76 Aligned_cols=145 Identities=16% Similarity=0.169 Sum_probs=102.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH-----Hhh----------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-----LLG----------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~-----~la----------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+. ... +...|+|+...
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 4578999998 8999999999999999999999986 210 11235565532
Q ss_pred Cc--chH----------------------HHHHhhcCCCCCccCC--ccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 707 SI--PYF----------------------DAIMLHMKSYDSPADG--KSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 707 ~~--~~~----------------------~~i~~~~~~~d~~~~~--~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
.+ ... ..++..++..+..... ...+|+|++|...+++. +.+|+++||||||+|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 11 111 1233445555444444 38899999997777665 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccccccccc
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 804 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~ 804 (968)
||+.....+ ..+++.+++. .++|++||+.+.+. .+++...+.+
T Consensus 172 LD~~~~~~l-~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~ 215 (227)
T cd03260 172 LDPISTAKI-EELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLN 215 (227)
T ss_pred CCHHHHHHH-HHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeC
Confidence 999888877 4555555555 89999999998753 4554433333
No 111
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=6.7e-18 Score=182.10 Aligned_cols=141 Identities=19% Similarity=0.261 Sum_probs=103.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcCCcc--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESASIP-- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~~~~-- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 4578999998 899999999999999999999998521 011235665432211
Q ss_pred -hH----------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 -YF----------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 -~~----------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.. ..++..++..+......+.+|+|++|...++++ +.+|+++||||||+|+|+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 11 123445566555566778899999997776655 889999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
..+.. +++.+++.|.++|++||+.+++. .+++.
T Consensus 173 ~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i 206 (240)
T PRK09493 173 HEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRL 206 (240)
T ss_pred HHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 88744 55556666899999999998864 44433
No 112
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.75 E-value=5.8e-18 Score=182.07 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=101.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceec-cCcCCcc---
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVP-AESASIP--- 709 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp-~~~~~~~--- 709 (968)
+.+.++++++| |++++|+||||||||||+|+|+|+... .+...|+| +....++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 45679999998 899999999999999999999998521 01123454 3221111
Q ss_pred hH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 710 YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 710 ~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
.. ..++..++..+........+|+|++|...++++ +.+|+++||||||+|||+.....
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 11 123344455555556677899999997766655 89999999999999999988888
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+...+.+...+.+.++|++||+++++ .++++.
T Consensus 192 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 224 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRV 224 (236)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEE
Confidence 85544443344589999999999875 444443
No 113
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=3.5e-18 Score=184.64 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=94.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh--------hcCceeccCcCCc---ch-----------------HHHHHhhcC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG--------ICGLMVPAESASI---PY-----------------FDAIMLHMK 719 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la--------~~g~~vp~~~~~~---~~-----------------~~~i~~~~~ 719 (968)
|++++|+||||||||||+|+|+|+.... +...++|+..... .. ...++..++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 7899999999999999999999986321 1223566643211 11 123444556
Q ss_pred CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 720 SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 720 ~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
..+......+.+|+|++|...+++. +.+|+++||||||+|||+.....+...+.+...+.+.++|++||+++++.
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 6555666778899999987766555 89999999999999999988888855555544456899999999998765
No 114
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.75 E-value=4e-18 Score=176.49 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=109.7
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCC-c-c---
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESAS-I-P--- 709 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~-~-~--- 709 (968)
.++|+||| |++++|+|++|||||||.|+++|+.-. .+...+|+|++.. + |
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 59999999 899999999999999999999999621 2223355654321 1 1
Q ss_pred ----------h---------HHHHHhhcCCCCC-ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 710 ----------Y---------FDAIMLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 710 ----------~---------~~~i~~~~~~~d~-~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
. ..+++..+|+..+ +.+....||+|++|+..|+++ +.+|+++|+|||||+||+...+.|
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 0 2345666776554 356677899999997777766 899999999999999999998888
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhhh-cccccccccccee
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 807 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~ 807 (968)
...+.+.-++.+.|.||+|||..+++ +++++..+.++.+
T Consensus 181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~i 220 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeE
Confidence 55555555567999999999999875 4444444444433
No 115
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.7e-18 Score=187.68 Aligned_cols=151 Identities=14% Similarity=0.161 Sum_probs=109.3
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceecc
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPA 703 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~ 703 (968)
++.+.+.+++.++++++| |++++|+||||||||||+|+|+|+... .....|+|+
T Consensus 10 ~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q 89 (283)
T PRK13636 10 ELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQ 89 (283)
T ss_pred eEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEec
Confidence 333444445679999999 899999999999999999999998511 112346776
Q ss_pred CcC--Cc--ch---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 704 ESA--SI--PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 704 ~~~--~~--~~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
... .. .. ++.++..+++.+........+|+|++|...++++ +.+|+++||||||
T Consensus 90 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt 169 (283)
T PRK13636 90 DPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT 169 (283)
T ss_pred CcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 541 11 11 1233445566655667778899999997777665 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKN 801 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~~~ 801 (968)
+|+|+.....+. .+++.+.+ .|.|+|++||+++.+. .+++.-.
T Consensus 170 ~gLD~~~~~~l~-~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~ 214 (283)
T PRK13636 170 AGLDPMGVSEIM-KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV 214 (283)
T ss_pred cCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 999998888774 44445544 5899999999998864 5554433
No 116
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.75 E-value=4.2e-18 Score=182.44 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=100.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcch--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPY-- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~~-- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 4578999998 899999999999999999999998521 1123467766433221
Q ss_pred -HHH------------------HHhhcC-CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 -FDA------------------IMLHMK-SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 -~~~------------------i~~~~~-~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
.+. +...++ ..+.......++|+|++|...+++. +.+|+++||||||+|||+.....+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~ 171 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 111 122222 2233445567789999987776655 8899999999999999998888884
Q ss_pred HHHHHHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 770 GSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 770 ~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
.++..+.+ .|.|+|++||+++.+. .+++.
T Consensus 172 -~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 202 (230)
T TIGR03410 172 -RVIRRLRAEGGMAILLVEQYLDFARELADRY 202 (230)
T ss_pred -HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEE
Confidence 44444554 5899999999998765 44433
No 117
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=7.8e-18 Score=181.80 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=101.6
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc---h-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---Y- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~---~- 710 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .....|+|+....++ .
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 568999998 899999999999999999999998521 111235666532221 1
Q ss_pred --------------------HHHHHhhcCCCC--CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYD--SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d--~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
+..++..++... .......++|+||+|...++++ +.+|+++||||||+|+|+.....
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 112344556653 4456678899999997776655 89999999999999999988777
Q ss_pred HHHHHHHHHHh-cCcEEEEeccChhhh-hccccc
Q 002090 768 IAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 768 i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+ ..+++.+.+ .|.++|++||+.+.+ ..+++.
T Consensus 174 l-~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i 206 (242)
T cd03295 174 L-QEEFKRLQQELGKTIVFVTHDIDEAFRLADRI 206 (242)
T ss_pred H-HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEE
Confidence 7 444555544 589999999999864 444443
No 118
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.2e-18 Score=193.57 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=112.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCcch---H-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPY---F- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~~~---~- 711 (968)
+..++++++| |++++|+||||||||||||+|+|+.... +...+++++.+.++. .
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 110 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ 110 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHH
Confidence 4578999988 8999999999999999999999996211 123467776554432 1
Q ss_pred --------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 712 --------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 712 --------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
..++..++..+........+|+|++|...+.++ +.+|+++|||||++|||+.....+..
T Consensus 111 Ni~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 190 (377)
T PRK11607 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQL 190 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 123444566666667778899999997777666 89999999999999999999888866
Q ss_pred HHHHHHHhcCcEEEEeccChhhh-hccccccccccc
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
.+.+.+++.|.|+|++||+.+.+ .++++...+..+
T Consensus 191 ~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G 226 (377)
T PRK11607 191 EVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226 (377)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCC
Confidence 66666666799999999999875 556654443333
No 119
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=4.2e-18 Score=173.96 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=87.6
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc---------------------eeccCcCCcchHHHH
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL---------------------MVPAESASIPYFDAI 714 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~---------------------~vp~~~~~~~~~~~i 714 (968)
.++++++| |++++|+||||||||||+|+|+|+.... .|. ++|+... +
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~-------~ 87 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPF-------L 87 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCch-------h
Confidence 68888888 8999999999999999999999985322 221 1222111 1
Q ss_pred HhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 715 ~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
+. ....+++ +|.|+++...++++ +.+|+++||||||+|+|+.....+ ..+++.+.+ ++++|++||+++..
T Consensus 88 ~~-~t~~e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~-~~tii~~sh~~~~~ 158 (171)
T cd03228 88 FS-GTIRENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI-LEALRALAK-GKTVIVIAHRLSTI 158 (171)
T ss_pred cc-chHHHHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHhcC-CCEEEEEecCHHHH
Confidence 11 1111222 88899987776655 899999999999999999887777 455555554 69999999999887
Q ss_pred hcc
Q 002090 794 SLP 796 (968)
Q Consensus 794 ~~~ 796 (968)
..+
T Consensus 159 ~~~ 161 (171)
T cd03228 159 RDA 161 (171)
T ss_pred HhC
Confidence 543
No 120
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=4.8e-18 Score=183.31 Aligned_cols=141 Identities=19% Similarity=0.206 Sum_probs=102.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCc---c
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASI---P 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~---~ 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....+ .
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 4679999999 899999999999999999999998521 11233566653221 1
Q ss_pred hH----------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 710 YF----------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 710 ~~----------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
.. +.++..++..+........+|+|++|...++.. +.+|+++||||||+|+|+....
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11 123334444444455567899999997766655 8999999999999999998877
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
.+ ..+++.+++.|.++|++||+.+.. ..+++.
T Consensus 175 ~l-~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v 207 (241)
T PRK10895 175 DI-KRIIEHLRDSGLGVLITDHNVRETLAVCERA 207 (241)
T ss_pred HH-HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEE
Confidence 77 556666766789999999998654 444433
No 121
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.8e-18 Score=186.53 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=102.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcCC--c-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESAS--I- 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~~--~- 708 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+.... .
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 4568999998 899999999999999999999998521 0123466665320 0
Q ss_pred -chH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 709 -PYF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 709 -~~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
... +.++..++..+......+.+|+|++|...+++. +.+|+++||||||+|||+...
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 011 123334455444556677899999997776655 899999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
..+ ..+++.+.+.|.++|++||+++.+ .++++.
T Consensus 173 ~~l-~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i 206 (271)
T PRK13638 173 TQM-IAIIRRIVAQGNHVIISSHDIDLIYEISDAV 206 (271)
T ss_pred HHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 877 455555666689999999999876 345443
No 122
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=5.2e-18 Score=178.38 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=101.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------------------hcCceeccCcCCcc-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASIP----- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------------------~~g~~vp~~~~~~~----- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...++|+.....+
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence 4578999998 8999999999999999999999985210 11224444322111
Q ss_pred ----------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 002090 710 ----------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSI 772 (968)
Q Consensus 710 ----------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~l 772 (968)
.++.++..++..+......+.+|+|++|...++++ +.+|+++||||||+|+|+.....+ ..+
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~ 171 (204)
T PRK13538 93 ENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL-EAL 171 (204)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHH
Confidence 11234455566555566778899999997776655 899999999999999999888888 555
Q ss_pred HHHHHhcCcEEEEeccChhhhhc
Q 002090 773 IETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 773 l~~l~~~g~~vl~~TH~~el~~~ 795 (968)
++.+.+.|.|+|++||+.++.+.
T Consensus 172 l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 172 LAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHHCCCEEEEEecChhhhcc
Confidence 55555668999999999988765
No 123
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.75 E-value=6.3e-18 Score=185.40 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=100.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD 98 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence 4679999999 899999999999999999999998511 112336666533221
Q ss_pred --hHH----------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 --YFD----------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 --~~~----------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
..+ .++..++..+......+++|+|++|...+++. +.+|+++||||||+|||+..
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 111 12344555555566678899999997776655 88999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
...+...+.+...+.|.++|++||+++.+.
T Consensus 179 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 179 MGVLVKLISELNSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 777744444433345899999999987653
No 124
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.75 E-value=7e-18 Score=179.87 Aligned_cols=144 Identities=20% Similarity=0.226 Sum_probs=105.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----------------hcCceeccCcCCcc---hH---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLMVPAESASIP---YF--- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----------------~~g~~vp~~~~~~~---~~--- 711 (968)
++.++++++| |++++|+||||||||||+++|+|+.... +...++|+....++ ..
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 4578999998 8999999999999999999999985211 11235565432221 11
Q ss_pred --------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 002090 712 --------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776 (968)
Q Consensus 712 --------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l 776 (968)
..++..++..+........+|+|+++...++++ +.+|+++||||||+|+|+.....+ ..++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~L~~~ 170 (223)
T TIGR03740 92 KVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL-RELIRSF 170 (223)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH-HHHHHHH
Confidence 233445566655566677899999987766655 899999999999999999888877 5555556
Q ss_pred HhcCcEEEEeccChhhh-hcccccccc
Q 002090 777 DNIGCLGIVSTHLHGIF-SLPLKIKNA 802 (968)
Q Consensus 777 ~~~g~~vl~~TH~~el~-~~~~~~~~~ 802 (968)
++.|.++|++||+.+.+ +.+++...+
T Consensus 171 ~~~~~tiii~sH~~~~~~~~~d~i~~l 197 (223)
T TIGR03740 171 PEQGITVILSSHILSEVQQLADHIGII 197 (223)
T ss_pred HHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 66689999999999876 455544333
No 125
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.75 E-value=5.1e-18 Score=193.03 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=112.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------h--------------------hcCceeccC
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G--------------------ICGLMVPAE 704 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------a--------------------~~g~~vp~~ 704 (968)
+...+++++|| |++++|+||||||||||+|+|+|+... . +...|+|+.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 45678999999 899999999999999999999998521 0 123466665
Q ss_pred cCCcch---H---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 705 SASIPY---F---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 705 ~~~~~~---~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
...++. . .+++..+++.+........+|+||+|...++++ +.+|+++||||||+|
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~ 194 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSA 194 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 544331 1 124455677666677778899999998777665 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccce
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
||+.....+...+.+...+.+.|+||+||+++++ +++++...+.++.
T Consensus 195 LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~ 242 (382)
T TIGR03415 195 LDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGR 242 (382)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999988886666554444589999999999875 5555544444443
No 126
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.3e-18 Score=188.82 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=106.1
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----------------------------------------
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------------------- 695 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------------------------- 695 (968)
.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 58999999 8999999999999999999999985210
Q ss_pred ----hcCceeccCc--CCc--ch---------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-
Q 002090 696 ----ICGLMVPAES--ASI--PY---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA- 744 (968)
Q Consensus 696 ----~~g~~vp~~~--~~~--~~---------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~- 744 (968)
+...|+|+.. ..+ .. +..++..++.. +.......++|+|++|...+++.
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1124667642 111 00 12345556764 45667788999999997777665
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccccccc
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNA 802 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~ 802 (968)
+.+|+++||||||+|||+.....+ ..+++.+++.|.|+|++||+++.+ +.+++...+
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 899999999999999999777776 566666767799999999999865 555544333
No 127
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5e-18 Score=187.27 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=104.8
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcC--Ccc--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA--SIP-- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~--~~~-- 709 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+... .++
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 579999999 899999999999999999999999521 112346666531 110
Q ss_pred h---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 710 Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 710 ~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
. +..++..+++.+.......++|+|++|...+++. +.+|+++||||||+|||+.....
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0 1234445566666677788999999997776655 89999999999999999988888
Q ss_pred HHHHHHHHHHh-cCcEEEEeccChhhhhccc
Q 002090 768 IAGSIIETLDN-IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 768 i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~ 797 (968)
+ ..+++.+++ .|.|+|++||+++.+..++
T Consensus 183 l-~~~l~~l~~~~g~tillvtH~~~~~~~~d 212 (280)
T PRK13633 183 V-VNTIKELNKKYGITIILITHYMEEAVEAD 212 (280)
T ss_pred H-HHHHHHHHHhcCCEEEEEecChHHHhcCC
Confidence 8 455555654 5999999999999875443
No 128
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=6.4e-18 Score=173.80 Aligned_cols=125 Identities=17% Similarity=0.106 Sum_probs=91.1
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcC--------------------ceeccCcCCcchHHHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG--------------------LMVPAESASIPYFDAI 714 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g--------------------~~vp~~~~~~~~~~~i 714 (968)
..++++++| |++++|+||||||||||+|+|+|+.... .| .|+|+....++
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~----- 88 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD----- 88 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-----
Confidence 368999988 8999999999999999999999985321 12 12333221111
Q ss_pred HhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 715 MLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 715 ~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
....+++ ...+|++++|...++++ +.+|+++||||||+|+|+.....+. .+++.+. ++.++|++||+.++.
T Consensus 89 ---~tv~~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~sh~~~~~ 160 (178)
T cd03247 89 ---TTLRNNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWITHHLTGI 160 (178)
T ss_pred ---ccHHHhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEecCHHHH
Confidence 1112222 56789999987776655 8999999999999999998877774 4445554 489999999999887
Q ss_pred hccc
Q 002090 794 SLPL 797 (968)
Q Consensus 794 ~~~~ 797 (968)
..++
T Consensus 161 ~~~d 164 (178)
T cd03247 161 EHMD 164 (178)
T ss_pred HhCC
Confidence 6443
No 129
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=7e-18 Score=164.31 Aligned_cols=150 Identities=16% Similarity=0.117 Sum_probs=122.8
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH------------------------HhhhcCceeccCcCCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS------------------------LLGICGLMVPAESASI 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~------------------------~la~~g~~vp~~~~~~ 708 (968)
+.-.++.++++ |+.++|+||+||||||||-.++|+- +.+....||+|....+
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 34578899988 8999999999999999999999983 1223334666655444
Q ss_pred ch------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 ~~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
|. ...++.++|..+.+...+.++|++.+|...|.++ +..|++++-||||-+||..
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 32 2356778899999999999999999988777766 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccce
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 806 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~ 806 (968)
.+..|+..+...-++.|+|.+++|||..++..+++.-.+..++
T Consensus 181 Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~ 223 (228)
T COG4181 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223 (228)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecce
Confidence 9999988888888889999999999999998877665554443
No 130
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.7e-18 Score=185.37 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=102.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC-Cc---c
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---P 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~-~~---~ 709 (968)
++.++++++| |++++|+||||||||||+++|+|+... .+...|+|+... .+ .
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 4679999998 899999999999999999999999521 111246666531 11 1
Q ss_pred hH---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 710 YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 710 ~~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
.. ..++..+++.+.+......+|+|++|...++++ +.+|+++||||||+|||+.....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11 123344566555666778899999997776655 89999999999999999988777
Q ss_pred HHHHHHHHHHhc-CcEEEEeccChhhhhccc
Q 002090 768 IAGSIIETLDNI-GCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 768 i~~~ll~~l~~~-g~~vl~~TH~~el~~~~~ 797 (968)
+ ..+++.+.+. +.++|++||+.+.+..++
T Consensus 181 l-~~~l~~~~~~~~~tiii~sH~~~~~~~~d 210 (271)
T PRK13632 181 I-KKIMVDLRKTRKKTLISITHDMDEAILAD 210 (271)
T ss_pred H-HHHHHHHHHhcCcEEEEEEechhHHhhCC
Confidence 7 4555555544 589999999998765443
No 131
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.75 E-value=6.1e-18 Score=183.42 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=103.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------hcCceeccCcCCcch--------------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIPY-------------- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------~~g~~vp~~~~~~~~-------------- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... ....|+|+.....+.
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~ 95 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPG 95 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccc
Confidence 4579999998 8999999999999999999999986321 122466665322111
Q ss_pred -----HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEE
Q 002090 711 -----FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLG 783 (968)
Q Consensus 711 -----~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~v 783 (968)
+..++..++..+........+|+|+++...++++ +.+|+++||||||+|||+.....+...+ ..+.+ .|.++
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~~~g~ti 174 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI-DQLRRELDCAV 174 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHHHhcCCEE
Confidence 1223445566666667778899999997776655 8999999999999999998888774444 44544 48999
Q ss_pred EEeccChhhh-hcccc
Q 002090 784 IVSTHLHGIF-SLPLK 798 (968)
Q Consensus 784 l~~TH~~el~-~~~~~ 798 (968)
|++||+.+.+ +.+++
T Consensus 175 iivsH~~~~i~~~~d~ 190 (251)
T PRK09544 175 LMVSHDLHLVMAKTDE 190 (251)
T ss_pred EEEecCHHHHHHhCCE
Confidence 9999999876 34443
No 132
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.2e-18 Score=185.49 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=102.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC-Ccc----
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SIP---- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~-~~~---- 709 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .++
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 101 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccH
Confidence 468999998 899999999999999999999998521 112245666531 110
Q ss_pred --------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 710 --------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 710 --------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
.+..++..++..+........+|+|+++...++++ +.+|+++||||||+|+|+.....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 01233455566666667778899999997776655 899999999999999999888888
Q ss_pred HHHHHHHHHh-cCcEEEEeccChhhhhccc
Q 002090 769 AGSIIETLDN-IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 769 ~~~ll~~l~~-~g~~vl~~TH~~el~~~~~ 797 (968)
...+ ..+.+ .|.|+|++||+.+.+..++
T Consensus 182 ~~~L-~~~~~~~~~tiiivtH~~~~~~~~d 210 (269)
T PRK13648 182 LDLV-RKVKSEHNITIISITHDLSEAMEAD 210 (269)
T ss_pred HHHH-HHHHHhcCCEEEEEecCchHHhcCC
Confidence 5544 44544 5899999999998765433
No 133
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=8.2e-18 Score=185.06 Aligned_cols=145 Identities=16% Similarity=0.169 Sum_probs=105.9
Q ss_pred ccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcC-
Q 002090 654 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA- 706 (968)
Q Consensus 654 ~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~- 706 (968)
.+.++..++++++| |++++|+||||||||||+|+|+|+... .+...|+|+...
T Consensus 10 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 89 (275)
T PRK13639 10 SYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDD 89 (275)
T ss_pred EeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhh
Confidence 33334568999999 899999999999999999999998511 112346666531
Q ss_pred -Cc--ch---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 707 -SI--PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 707 -~~--~~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
.+ .. +..++..+++.+.......++|+|++|...+++. +.+|+++||||||+|+|
T Consensus 90 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 169 (275)
T PRK13639 90 QLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169 (275)
T ss_pred hhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 11 11 1123445566555566778899999997776655 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+.....+...+ ..+.+.|.|+|++||+++.+. ++++.
T Consensus 170 ~~~~~~l~~~l-~~l~~~~~til~vtH~~~~~~~~~d~i 207 (275)
T PRK13639 170 PMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKV 207 (275)
T ss_pred HHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 98888884444 455556899999999998764 45543
No 134
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.3e-18 Score=193.61 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=107.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASI 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~ 708 (968)
+...++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....+
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 34568999998 899999999999999999999998511 01234677764332
Q ss_pred ch------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 ~~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
+. ++.++..+++.+......+.+|+||+|...++++ +.+|+++||||||+|||+.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 21 1234555677666777788999999998777665 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
....+...+.+...+.|+|+|++||+++.+ .++++.
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 888885444443344689999999999875 345443
No 135
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.75 E-value=7e-18 Score=185.34 Aligned_cols=139 Identities=20% Similarity=0.222 Sum_probs=103.0
Q ss_pred ccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------hhcCceeccCcCC---c-
Q 002090 654 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLMVPAESAS---I- 708 (968)
Q Consensus 654 ~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------a~~g~~vp~~~~~---~- 708 (968)
.+.+++.++++++| |++++|+||||||||||+|+|+|+... .....|+|+.... .
T Consensus 15 ~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~ 94 (272)
T PRK15056 15 TWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFP 94 (272)
T ss_pred EecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCC
Confidence 33345679999998 899999999999999999999998521 0113356654211 0
Q ss_pred -c-------------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 709 -P-------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 709 -~-------------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
. ....++..+++.+........+|+|++|...++++ +.+|+++||||||+|||
T Consensus 95 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD 174 (272)
T PRK15056 95 VLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174 (272)
T ss_pred cchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 0 01233455566655666778899999997776655 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
+.....+ ..++..+++.|.++|++||+.+.+
T Consensus 175 ~~~~~~l-~~~L~~~~~~g~tviivsH~~~~~ 205 (272)
T PRK15056 175 VKTEARI-ISLLRELRDEGKTMLVSTHNLGSV 205 (272)
T ss_pred HHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9888887 455555666689999999998765
No 136
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.75 E-value=6e-18 Score=171.99 Aligned_cols=129 Identities=17% Similarity=0.197 Sum_probs=93.1
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------hcCceeccCcCCcchHHHHHhhcCCCCC
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIPYFDAIMLHMKSYDS 723 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------~~g~~vp~~~~~~~~~~~i~~~~~~~d~ 723 (968)
+++.++++++| |++++|+||||||||||+++|+|+.... +...|+|++....+ ..+.. +
T Consensus 12 ~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~------n 83 (166)
T cd03223 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL--GTLRE------Q 83 (166)
T ss_pred CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc--ccHHH------H
Confidence 34578999998 8999999999999999999999986322 11235666543211 01222 2
Q ss_pred ccC-CccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 724 PAD-GKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 724 ~~~-~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
+.. ....+|++++|...++++ +.+|+++||||||+|+|+.....+...+. .+ +.++|++||+.++...++
T Consensus 84 l~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~---~~tiiivsh~~~~~~~~d 155 (166)
T cd03223 84 LIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL---GITVISVGHRPSLWKFHD 155 (166)
T ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh---CCEEEEEeCChhHHhhCC
Confidence 211 457899999987776655 89999999999999999988777744433 33 689999999988755443
No 137
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=7.8e-18 Score=181.71 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=103.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~---- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence 4578999998 899999999999999999999998521 112235666532211
Q ss_pred ---------------hHHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 002090 710 ---------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSI 772 (968)
Q Consensus 710 ---------------~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~l 772 (968)
....++..++.. +........+|+|++|...++++ +.+|+++||||||+|+|+.....+ ..+
T Consensus 95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~ 173 (241)
T PRK14250 95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII-EEL 173 (241)
T ss_pred HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHH
Confidence 112344455664 33456677899999997776655 899999999999999999877777 455
Q ss_pred HHHHHh-cCcEEEEeccChhhhh-ccccccc
Q 002090 773 IETLDN-IGCLGIVSTHLHGIFS-LPLKIKN 801 (968)
Q Consensus 773 l~~l~~-~g~~vl~~TH~~el~~-~~~~~~~ 801 (968)
++.+.+ .|.++|++||+.+.+. .+++.-.
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~ 204 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAF 204 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCCEEEE
Confidence 555554 5899999999998754 4554333
No 138
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.75 E-value=8.6e-18 Score=181.47 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=102.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~--- 709 (968)
++.++++++| |++++|+||||+|||||+|+|+|+... .+...++|+....++
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 4578999999 899999999999999999999998511 011234555432211
Q ss_pred h-----------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 710 Y-----------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 710 ~-----------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
. +..++..++..+......+++|+|++|...++++ +.+|+++||||||+|
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 1 1233445566655666778899999997776655 889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|+.....+ ..+++.+.+ +.++|++||+++++. ++++.
T Consensus 174 LD~~~~~~l-~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i 212 (242)
T TIGR03411 174 MTDEETEKT-AELLKSLAG-KHSVVVVEHDMEFVRSIADKV 212 (242)
T ss_pred CCHHHHHHH-HHHHHHHhc-CCEEEEEECCHHHHHHhCCEE
Confidence 999888877 455555555 689999999998764 44443
No 139
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.1e-18 Score=187.22 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=106.4
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCc--CCc-
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAES--ASI- 708 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~--~~~- 708 (968)
.++++++| |++++|+||||||||||+|+|+|+... .+...++++.. ..+
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 58999999 899999999999999999999998521 11123666643 111
Q ss_pred -ch---------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 709 -PY---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 709 -~~---------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
.. +..++..+++. +........+|+|++|...+++. +.+|+++||||||+|||+..
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 11 12234445664 33456678899999997776665 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccce
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
...+ ..+++.+++.|.|||++||+++++ .++++...+..+.
T Consensus 180 ~~~l-~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 180 RIEM-MQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred HHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 7777 556667766799999999999876 4566544433333
No 140
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.75 E-value=6.7e-18 Score=184.03 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=102.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCc---ch
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASI---PY 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~---~~ 710 (968)
++.++++++| |++++|+||||||||||+++|+|+... .+...++|+..... ..
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 4679999998 899999999999999999999998521 11123566643221 11
Q ss_pred H---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-C------CCCcEEEEeCCCCCCCH
Q 002090 711 F---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-T------TSRSLVLIDEICRGTET 762 (968)
Q Consensus 711 ~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a------~~~~LlLlDEp~~GlD~ 762 (968)
. ..++..++..+........+|+|++|...++++ + .+|+++||||||+|||+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 1 123344555555566677899999998877776 4 38999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
.....+...+.+..++.|.++|++||+++.+. ++++
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCE
Confidence 88888755554433267899999999998764 4443
No 141
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.75 E-value=1.1e-17 Score=178.74 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=102.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--h-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--Y- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 98 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHH
Confidence 4679999999 899999999999999999999998521 112345666532211 1
Q ss_pred ------------------HHHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 ------------------FDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 ------------------~~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
+..++..++..+ .......++|+|+++...+++. +.+|+++||||||+|+|+.....+..
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (225)
T PRK10247 99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178 (225)
T ss_pred HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 123445556643 3456678899999987766655 89999999999999999988777755
Q ss_pred HHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.+.+..++.|.++|++||+.+....++
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~~~~d 205 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEINHAD 205 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHHHhCC
Confidence 555444456899999999998876433
No 142
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.74 E-value=8.6e-18 Score=176.30 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=98.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCc---ch-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASI---PY- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~---~~- 710 (968)
++.++++++| |++++|+||||+|||||+++|+|+... .+...|+|+..... ..
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHH
Confidence 4578999988 899999999999999999999998521 11123455433211 11
Q ss_pred --------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002090 711 --------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIET 775 (968)
Q Consensus 711 --------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~ 775 (968)
++.++..++..+.......++|+|++|...+++. +.+|+++||||||+|+|+.....+. .++..
T Consensus 92 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 170 (201)
T cd03231 92 ENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA-EAMAG 170 (201)
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 2234455666655566677899999997776655 8999999999999999998888884 44545
Q ss_pred HHhcCcEEEEeccChhh
Q 002090 776 LDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 776 l~~~g~~vl~~TH~~el 792 (968)
+.+.|.++|++||+.+.
T Consensus 171 ~~~~g~tiii~sH~~~~ 187 (201)
T cd03231 171 HCARGGMVVLTTHQDLG 187 (201)
T ss_pred HHhCCCEEEEEecCchh
Confidence 56668999999997654
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.9e-18 Score=184.26 Aligned_cols=141 Identities=15% Similarity=0.107 Sum_probs=101.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc---h
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---Y 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~---~ 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTV 102 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccH
Confidence 4679999999 899999999999999999999998521 112335665432111 1
Q ss_pred H-------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 711 F-------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 711 ~-------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. +.++..++..+.+......+|+|++|...++++ +.+|+++||||||+|+|+..
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1 223344455444555667899999987776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHh-cCcEEEEeccChhhh-hccccc
Q 002090 765 GTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 765 ~~~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~ 799 (968)
...+. .++..+.+ .|.++|++||+.+.. +.+++.
T Consensus 183 ~~~~~-~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i 218 (265)
T PRK10575 183 QVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYL 218 (265)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 87774 44445544 589999999999875 344433
No 144
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.74 E-value=9.8e-18 Score=178.37 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=103.5
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCcc--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP-- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~~-- 709 (968)
+.++++++| |++++|+||||||||||+++|+|+... .+...++|+....++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 578999999 899999999999999999999998411 122345555432211
Q ss_pred -----------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 -----------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 -----------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.+..++..++..+........+|.|++|...+++. +.+|+++|||||++|+|+...
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 12234455666666667778899999997776655 899999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
..+...+.+...+.+.++|++||++++.+.+++
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~ 210 (220)
T TIGR02982 178 RDVVELMQKLAREQGCTILIVTHDNRILDVADR 210 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence 888444444333468999999999987655543
No 145
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.1e-17 Score=175.37 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=101.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCc---ch-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASI---PY- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~---~~- 710 (968)
++.++++++| |++++|+||||||||||+++|+|+... .+...|+|+..... ..
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence 4579999999 899999999999999999999998511 11123455443211 11
Q ss_pred ---------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002090 711 ---------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIE 774 (968)
Q Consensus 711 ---------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~ 774 (968)
++.++..++..+........+|+|+++...++++ +.+|+++||||||+|+|+.....+. .+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~-~~l~ 171 (200)
T PRK13540 93 ENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII-TKIQ 171 (200)
T ss_pred HHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHH
Confidence 1234444455544455667899999886666555 8999999999999999998888774 4444
Q ss_pred HHHhcCcEEEEeccChhhhhccc
Q 002090 775 TLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 775 ~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.+++.|.++|++||+.++...++
T Consensus 172 ~~~~~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 172 EHRAKGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred HHHHcCCEEEEEeCCchhccccc
Confidence 55667899999999998876544
No 146
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.74 E-value=6.1e-18 Score=181.18 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=95.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh---------------hcCceeccCcCCcc---hH------------------
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIP---YF------------------ 711 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la---------------~~g~~vp~~~~~~~---~~------------------ 711 (968)
|++++|+||||||||||+|+|+|+.... ....++|+....++ ..
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 90 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE 90 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 8999999999999999999999986211 00135565432211 11
Q ss_pred -----HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 002090 712 -----DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 785 (968)
Q Consensus 712 -----~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~ 785 (968)
..++..++..+......+.+|+|++|...+++. +.+|+++||||||+|+|+.....+...+.+..++.|.++|+
T Consensus 91 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~ 170 (230)
T TIGR01184 91 RRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170 (230)
T ss_pred HHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 123344455555556677899999997776655 89999999999999999988888855555544445899999
Q ss_pred eccChhhh-hccccccc
Q 002090 786 STHLHGIF-SLPLKIKN 801 (968)
Q Consensus 786 ~TH~~el~-~~~~~~~~ 801 (968)
+||+++.+ +.+++.-.
T Consensus 171 ~sH~~~~~~~~~d~v~~ 187 (230)
T TIGR01184 171 VTHDVDEALLLSDRVVM 187 (230)
T ss_pred EeCCHHHHHHhcCEEEE
Confidence 99999865 44554433
No 147
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=9.5e-18 Score=177.27 Aligned_cols=138 Identities=21% Similarity=0.264 Sum_probs=101.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc---hH
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---YF 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~---~~ 711 (968)
++.++++++| | +++|+||||||||||+|+|+|+... .+...++|++...++ ..
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 3578999998 7 9999999999999999999998521 122346666543221 11
Q ss_pred ---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 712 ---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 712 ---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
+.++..++..+........+|+|++|...++++ +.+|+++||||||+|+|+.....+
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l- 169 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF- 169 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-
Confidence 123334455544556667899999997776655 899999999999999999887777
Q ss_pred HHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
..+++.+++ +.|+|++||+.+++. ++++
T Consensus 170 ~~~l~~~~~-~~tii~vsH~~~~~~~~~d~ 198 (211)
T cd03264 170 RNLLSELGE-DRIVILSTHIVEDVESLCNQ 198 (211)
T ss_pred HHHHHHHhC-CCEEEEEcCCHHHHHHhCCE
Confidence 556666665 589999999998764 4443
No 148
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=185.30 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=104.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcC--Cc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESA--SI 708 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~--~~ 708 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+... .+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 468999998 899999999999999999999998511 012246666531 11
Q ss_pred --chH---------------------HHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 --PYF---------------------DAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 --~~~---------------------~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
... ..++..++.. +.......++|+||+|+..++++ +.+|+++||||||+|||+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 111 2234445664 34567778999999997776665 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
....+ ..+++.+++.|.|+|++||+++.+. .+++.
T Consensus 180 ~~~~l-~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 180 GRKEM-MQLFKDYQKAGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred HHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 87777 5566667667999999999998764 45443
No 149
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8.7e-18 Score=172.80 Aligned_cols=132 Identities=22% Similarity=0.318 Sum_probs=88.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCce-eccCc-CC-----------cchH---HHHHhh
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM-VPAES-AS-----------IPYF---DAIMLH 717 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~-vp~~~-~~-----------~~~~---~~i~~~ 717 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... .|.. +.... .. +.++ ..++..
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 3568999988 8999999999999999999999985321 2211 10000 00 0000 001111
Q ss_pred cCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEeccChhhhh
Q 002090 718 MKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFS 794 (968)
Q Consensus 718 ~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~vl~~TH~~el~~ 794 (968)
....+++... +|+|++|...++++ +.+|+++|||||++|+|+.....+ ..+++.+++. |.++|++||++++..
T Consensus 91 ~t~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 91 LTVLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV-RALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CCHHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1111111111 89999987666555 899999999999999999887777 5555556655 799999999998765
No 150
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.9e-18 Score=185.81 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=104.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh-----------------------cCceeccCcC-Cc--
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----------------------CGLMVPAESA-SI-- 708 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~-----------------------~g~~vp~~~~-~~-- 708 (968)
+.++++++| |++++|+||||||||||+|+|+|+..... ...++|+... .+
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 468999998 89999999999999999999999863321 1235565431 11
Q ss_pred -ch---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 709 -PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 709 -~~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.. ++.++..+++.+........+|+|++|...++++ +.+|+++||||||+|||+...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 11 1234455566666667778999999997776655 899999999999999999888
Q ss_pred HHHHHHHHHHHHh-cCcEEEEeccChhhhhcccc
Q 002090 766 TCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 766 ~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~ 798 (968)
..+.. +++.+.+ .|.+||++||+++++..+++
T Consensus 180 ~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~ 212 (282)
T PRK13640 180 EQILK-LIRKLKKKNNLTVISITHDIDEANMADQ 212 (282)
T ss_pred HHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 88855 4445544 58999999999998765443
No 151
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=99.74 E-value=3.9e-17 Score=182.55 Aligned_cols=289 Identities=18% Similarity=0.171 Sum_probs=196.2
Q ss_pred CccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc-------------ccCCccHHHHHHHHHhccCCc
Q 002090 305 PCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV-------------TCSIPEFTCLVKLLELREANH 371 (968)
Q Consensus 305 ~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~-------------l~~i~dlrrL~~~l~~p~a~~ 371 (968)
.||++. ++.|.|++|.|.||+|++.|+. +. ..|++|++.+..+ +..+||++++..++..+.+++
T Consensus 2 ~sL~~~-l~~~~T~~G~r~L~~wl~~Pl~-~~-~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~~~~ 78 (308)
T smart00533 2 GSLFEL-LNHTKTPMGKRLLRRWLLQPLL-DL-KEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGRASP 78 (308)
T ss_pred CCHHHH-HccCCCcHHHHHHHHHHHhhCC-CH-HHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCCCCH
Confidence 378888 8899999999999999999999 88 9999999998875 788999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhhchhhhhhccCCchhhhcccCCCchh
Q 002090 372 IEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSE 451 (968)
Q Consensus 372 ~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~i~~~i~l~~e~~~~~~~~~~I~~~ 451 (968)
.|+..|...+.++ ..++..+...-.... ..+..++. .........+.+.+.. .+.. .....+.|.++
T Consensus 79 ~el~~l~~~l~~~------~~l~~~l~~~~~~~~--~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~-~~~~~~~i~~~ 145 (308)
T smart00533 79 RDLLRLYDSLEGL------KEIRQLLESLDGPLL--GLLLKVIL---EPLLELLELLLELLND-DDPL-EVNDGGLIKDG 145 (308)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHhcCcHHH--HHHHHhhc---cchHHHHHHHHHHhcc-CCcc-cccCCCeeCCC
Confidence 9999999999988 666666643211100 00000100 0001111112222221 0110 11223567778
Q ss_pred HHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceeeeccccccc
Q 002090 452 FFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPT 531 (968)
Q Consensus 452 ~~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~ 531 (968)
++++++ ++++..+.+...+.+....+.. +.+....++.|....| |.+.++
T Consensus 146 ~s~~Ld-----------------~lr~~~~~l~~~l~~~~~~~~~-------~~~~~~l~~~~~~~~g------~~i~v~ 195 (308)
T smart00533 146 FDPELD-----------------ELREKLEELEEELEELLKKERE-------ELGIDSLKLGYNKVHG------YYIEVT 195 (308)
T ss_pred CCHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH-------HhCCCceEEeEeccEE------EEEEec
Confidence 888776 5555555544444333211111 1122233444444444 444443
Q ss_pred cccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 532 VWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI 611 (968)
Q Consensus 532 ~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~ 611 (968)
. .....+++..+..+.+|..+ +|.++++.++++++.+++.++.+++..++.++...+..+...+..+...++.
T Consensus 196 --~--~~~~~~~~~~~~~s~s~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~ 268 (308)
T smart00533 196 --K--SEAKKVPKDFIRRSSLKNTE---RFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAE 268 (308)
T ss_pred --c--hhhccCChHHHHHhhhcccc---eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23345666555555555544 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccCCcccCccccccccCcceeEEc-CCCcc
Q 002090 612 GKALFAHVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPY 651 (968)
Q Consensus 612 Adal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~ 651 (968)
+|+++|+|..|..++||+|+++++ ..+.+. ++||+
T Consensus 269 lD~l~s~a~~a~~~~~~~P~i~~~-----~~l~i~~~rHPl 304 (308)
T smart00533 269 LDVLLSLATLAAEGNYVRPEFVDS-----GELEIKNGRHPV 304 (308)
T ss_pred HHHHHHHHHHHHHCCCcCCeeCCC-----CCEEEeeCCCCc
Confidence 999999999999999999999874 235554 44554
No 152
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.74 E-value=8.9e-18 Score=182.94 Aligned_cols=141 Identities=21% Similarity=0.209 Sum_probs=103.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCc---ch
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASI---PY 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~---~~ 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++.... ..
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 4679999999 899999999999999999999998511 11223666653211 11
Q ss_pred H-------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 711 F-------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 711 ~-------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. ..++..++..+........+|+|+++...++++ +.+|+++||||||+|+|+..
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 1 123344455555566677899999997776655 88999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
...+ ..+++.+++.|.|+|++||+++.. +.+++.
T Consensus 173 ~~~l-~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 173 QLET-LALVRELAATGVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 7777 555556666689999999999887 445543
No 153
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.6e-18 Score=181.09 Aligned_cols=144 Identities=19% Similarity=0.174 Sum_probs=104.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------------hhcCceeccCcCC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------------GICGLMVPAESAS 707 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------------a~~g~~vp~~~~~ 707 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 4579999998 899999999999999999999998521 0112456665322
Q ss_pred cc---hHH----------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 708 IP---YFD----------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 708 ~~---~~~----------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
++ ..+ .++..++..+.+......+|+|++|...++++ +.+|+++||||||+|+|
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 21 111 22334566555566677899999997776655 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccccccc
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNA 802 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~ 802 (968)
+.....+ ..+++.+++.|.|+|++||+.+.. +.+++.-.+
T Consensus 174 ~~~~~~l-~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 214 (242)
T PRK11124 174 PEITAQI-VSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214 (242)
T ss_pred HHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 9887777 555566666789999999999876 345544333
No 154
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8e-18 Score=184.21 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=102.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc---h
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---Y 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~---~ 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .....|+|++...++ .
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence 4679999999 899999999999999999999998511 111235665432211 1
Q ss_pred H-------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 711 F-------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 711 ~-------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. +.++..+++.+........+|+|++|...++++ +.+|+++||||||+|+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 1 123344455555566678899999987776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHh-cCcEEEEeccChhhh-hccccc
Q 002090 765 GTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 765 ~~~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~ 799 (968)
...+...+ ..+.+ .|.++|++||+.+.+ +++++.
T Consensus 179 ~~~l~~~L-~~l~~~~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 179 QIDLLELL-SELNREKGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred HHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 88885544 44554 589999999999864 445533
No 155
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.1e-17 Score=176.37 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=100.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-----------------hcCceeccCcCCc---ch---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLMVPAESASI---PY--- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-----------------~~g~~vp~~~~~~---~~--- 710 (968)
++.++++++| |++++|+||||||||||+++|+|+.... ....++|+..... ..
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 4578999998 8999999999999999999999985211 1123454332111 11
Q ss_pred --------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002090 711 --------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIET 775 (968)
Q Consensus 711 --------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~ 775 (968)
+..++..++..+.......++|+|++|...++++ +.+|+++||||||+|+|+.....+ ..+++.
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 172 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF-AELIRA 172 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 1223444555544455667899999987766655 899999999999999999888888 555555
Q ss_pred HHhcCcEEEEeccChhhhhc
Q 002090 776 LDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 776 l~~~g~~vl~~TH~~el~~~ 795 (968)
+.+.|.++|++||+.+....
T Consensus 173 ~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 173 HLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHCCCEEEEEeCCchhhcc
Confidence 56669999999999988664
No 156
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.74 E-value=1.4e-17 Score=179.79 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=98.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--Hh--------------------hhc-CceeccCcCCcch
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LL--------------------GIC-GLMVPAESASIPY 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--~l--------------------a~~-g~~vp~~~~~~~~ 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+. .. .+. ..|+|+....++.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 4578999998 8999999999999999999999983 00 111 2356665332110
Q ss_pred -------------------------------HHHHHhhcCCCC-CccCCcc-chHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 711 -------------------------------FDAIMLHMKSYD-SPADGKS-SFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 711 -------------------------------~~~i~~~~~~~d-~~~~~~s-~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
+..++..++..+ ....... .+|+|++|...+++. +.+|+++|||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 112233345542 2334444 499999997776655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
|+|+|+.....+ ..+++.+++.|.|+|++||+.+++..
T Consensus 172 t~~LD~~~~~~l-~~~l~~~~~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 172 DSGLDIDALKIV-AEGINRLREPDRSFLIITHYQRLLNY 209 (243)
T ss_pred cccCCHHHHHHH-HHHHHHHHHCCcEEEEEEecHHHHHh
Confidence 999999888877 45555566678999999999988754
No 157
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.74 E-value=9.1e-18 Score=182.39 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=102.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------------hhcCce
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------------GICGLM 700 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------------a~~g~~ 700 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 3578999998 899999999999999999999998521 112235
Q ss_pred eccCcCCcc---hH----------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 701 VPAESASIP---YF----------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 701 vp~~~~~~~---~~----------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
+|+....++ .. ..++..++..+........+|+|++|...++++ +.+|+++|||
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 555432221 11 123444555555556677899999987776655 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
|||+|||+.....+...+.+...+.|.++|++||+++.+ .++++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 217 (252)
T TIGR03005 172 EVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRV 217 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 999999998877775444444444589999999999876 445543
No 158
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.74 E-value=1e-17 Score=175.34 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=98.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc---h-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~---~- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 4678999998 899999999999999999999998511 011235565432211 1
Q ss_pred ----------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002090 711 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSII 773 (968)
Q Consensus 711 ----------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll 773 (968)
+..++..++..+.......++|+|++|...++++ +.+|+++||||||+|+|+.....+ ..++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL-AGLL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHH
Confidence 1233445566655566778899999987776655 899999999999999999877777 5555
Q ss_pred HHHHhcCcEEEEeccChh
Q 002090 774 ETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 774 ~~l~~~g~~vl~~TH~~e 791 (968)
..+.+.|.++|++||+..
T Consensus 171 ~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 171 RAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHhCCCEEEEEEcccc
Confidence 555666899999999874
No 159
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=176.73 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=97.3
Q ss_pred eEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCcc---hH-------
Q 002090 664 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---YF------- 711 (968)
Q Consensus 664 ~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~~---~~------- 711 (968)
+++| |++++|+||||||||||+|+|+|+.... +...++|++...++ ..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 6666 8999999999999999999999985210 11235665533221 11
Q ss_pred --------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 002090 712 --------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776 (968)
Q Consensus 712 --------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l 776 (968)
..++..++..+........+|+|++|...++++ +.+|+++||||||+|+|+.....+...+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 123344455544555667899999997776665 89999999999999999988888855554433
Q ss_pred HhcCcEEEEeccChhhh-hccccc
Q 002090 777 DNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 777 ~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
.+.|+++|++||+++.+ +++++.
T Consensus 176 ~~~~~tii~~sH~~~~~~~~~d~i 199 (211)
T cd03298 176 AETKMTVLMVTHQPEDAKRLAQRV 199 (211)
T ss_pred HhcCCEEEEEecCHHHHHhhhCEE
Confidence 44589999999999876 345443
No 160
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=184.45 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=104.5
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCc--CCc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAES--ASI 708 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~--~~~ 708 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+.. ..+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 469999999 899999999999999999999998521 11224677753 111
Q ss_pred --ch---------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 --PY---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 --~~---------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
.. +..++..++.. +.......++|+|++|...+++. +.+|+++||||||+|||+.
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 11 12344455665 44556788999999998777666 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHh-cCcEEEEeccChhhh-hccccc
Q 002090 764 KGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~ 799 (968)
....+ ..+++.+.+ .|.|+|++||+++.+ +.+++.
T Consensus 180 ~~~~l-~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 180 SKRQV-MRLLKSLQTDENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred HHHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 88877 555655654 589999999999875 455544
No 161
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.2e-17 Score=181.85 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=101.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCc---ch
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASI---PY 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~---~~ 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++.... ..
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 4679999998 899999999999999999999998511 11234666653221 11
Q ss_pred HH-------------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 711 FD-------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 711 ~~-------------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
.+ .++..++..+........+|+|++|...++++ +.+|+++||||||+|+|+..
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11 22333455444456667899999987766655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
...+. .+++.+.+.|.++|++||+.+.+. .++
T Consensus 174 ~~~l~-~~l~~l~~~~~tiii~tH~~~~~~~~~d 206 (255)
T PRK11231 174 QVELM-RLMRELNTQGKTVVTVLHDLNQASRYCD 206 (255)
T ss_pred HHHHH-HHHHHHHHCCCEEEEEECCHHHHHHhcC
Confidence 77775 444556656899999999998753 444
No 162
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-17 Score=184.60 Aligned_cols=146 Identities=14% Similarity=0.050 Sum_probs=106.2
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------------hcCceeccCcC--Cc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESA--SI 708 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------------~~g~~vp~~~~--~~ 708 (968)
..++++++| |++++|+||||||||||+|+|+|+.... +...|+|+... .+
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 469999999 8999999999999999999999985210 12346776531 11
Q ss_pred --ch---------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 --PY---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 --~~---------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
.. ++.++..+++. +........+|+||+|...+++. +.+|+++||||||+|||+.
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~ 179 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179 (290)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 11 12344456665 33466778999999997776665 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHh-cCcEEEEeccChhhh-hccccccccccc
Q 002090 764 KGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
....+ ..++..+.+ .|.|||++||+++.+ +.+++...+..+
T Consensus 180 ~~~~l-~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G 222 (290)
T PRK13634 180 GRKEM-MEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222 (290)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 88877 455555554 589999999999876 455544333333
No 163
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.74 E-value=1.2e-17 Score=178.42 Aligned_cols=139 Identities=16% Similarity=0.124 Sum_probs=99.3
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcC--Cc--
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SI-- 708 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~--~~-- 708 (968)
.++++++| |++++|+||||||||||+++|+|+... .+...|+|+... ..
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 68999988 899999999999999999999998521 012335665541 11
Q ss_pred -chHH-----------------------HHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 709 -PYFD-----------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 709 -~~~~-----------------------~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
...+ .++..++.. .........+|+|++|...+++. +.+|+++||||||+|||+
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 1111 122344543 23455667899999997776655 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
.....+...+.+...+.|.++|++||+.+.+. .+++
T Consensus 179 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 215 (228)
T cd03257 179 SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADR 215 (228)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 88777755554443334899999999998765 4443
No 164
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.9e-18 Score=180.42 Aligned_cols=140 Identities=18% Similarity=0.195 Sum_probs=99.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~--- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 4679999999 899999999999999999999998511 112335666543221
Q ss_pred hHHH-------------------HHhhc-CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 710 YFDA-------------------IMLHM-KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 710 ~~~~-------------------i~~~~-~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
..++ +...+ +..+.......++|+|++|...+++. +.+|+++||||||+|+|+.....+
T Consensus 97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l 176 (237)
T PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176 (237)
T ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence 1121 11222 12333344556789999987766655 889999999999999999877777
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhh-hcccc
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~ 798 (968)
..+++.+.+.|.|+|++||+.+.+ +.+++
T Consensus 177 -~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 177 -FDTIEQLREQGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred -HHHHHHHHHCCCEEEEEeCcHHHHHhhCCE
Confidence 555556666799999999998753 44443
No 165
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.74 E-value=1.2e-17 Score=182.88 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=102.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcC--Cc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SI 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~--~~ 708 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... ..
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4679999999 899999999999999999999998510 112346666531 11
Q ss_pred ---ch----------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 709 ---PY----------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 709 ---~~----------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
.. +..++..++.. .........+|+|++|...++++ +.+|+++||||||+|||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11 12234455664 34456677899999997777655 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+.....+...+.+...+.|.|+|++||+++.+. ++++
T Consensus 183 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcE
Confidence 988777755554444445899999999998764 4443
No 166
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=182.84 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=102.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----------------------------hcCceeccCc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------------ICGLMVPAES 705 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----------------------------~~g~~vp~~~ 705 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+..
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 4678999999 8999999999999999999999986321 0123556543
Q ss_pred CCcc---hH-----------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 706 ASIP---YF-----------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 706 ~~~~---~~-----------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
..++ .. ..++..++..+........+|+|++|...++++ +.+|+++|
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 2211 11 123333455544556667899999997776655 89999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-hcCcEEEEeccChhhh-hccccc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~-~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
|||||+|||+.....+ ..+++.+. +.|.++|++||+.+++ ..+++.
T Consensus 176 lDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 176 ADEPIASLDPESARIV-MDTLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred ecCccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999888887 44455554 4589999999999864 455443
No 167
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=1.2e-17 Score=171.88 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=108.8
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcC-ceeccCcCCcch-
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICG-LMVPAESASIPY- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g-~~vp~~~~~~~~- 710 (968)
+...++.++|| |++++|+||||+|||||||+|+|++- .++.| .|||+....++.
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 56789999999 89999999999999999999999962 12222 477776544322
Q ss_pred ----------------------HHHHHhhcC-CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 711 ----------------------FDAIMLHMK-SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 711 ----------------------~~~i~~~~~-~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
.+.+|..|- ..+...+...++|+|.+|+..|.++ +++|+|+|||||+.||.|.-..
T Consensus 94 TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~ 173 (237)
T COG0410 94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 173 (237)
T ss_pred cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHH
Confidence 223443332 3344455667899999998777666 8999999999999999998888
Q ss_pred HHHHHHHHHHH-hcCcEEEEeccChhhh-hccccccccccce
Q 002090 767 CIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 767 ~i~~~ll~~l~-~~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
.| ..+++.++ +.|.||+++-++...+ +++++...+.++.
T Consensus 174 ~I-~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gr 214 (237)
T COG0410 174 EI-FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGR 214 (237)
T ss_pred HH-HHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCE
Confidence 88 45555566 4588999999998876 3555443333333
No 168
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.74 E-value=8.9e-18 Score=178.63 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=97.3
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFD 712 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~~ 712 (968)
+.++++++| |++++|+||||||||||+++|+|+... .+...++|+....++ ..+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 568999998 899999999999999999999998521 112346666543221 111
Q ss_pred H---------------HHhhcCCCCCccC-----------CccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 713 A---------------IMLHMKSYDSPAD-----------GKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 713 ~---------------i~~~~~~~d~~~~-----------~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
. ++..++..+.+.. ....+|+|++|...++++ +.+|+++||||||+|||+...
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 1 2222233222211 235899999997776665 899999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
..+. .+++.+++. .++|++||++++.+.+++
T Consensus 177 ~~l~-~~l~~~~~~-~tii~~sH~~~~~~~~d~ 207 (220)
T cd03245 177 ERLK-ERLRQLLGD-KTLIIITHRPSLLDLVDR 207 (220)
T ss_pred HHHH-HHHHHhcCC-CEEEEEeCCHHHHHhCCE
Confidence 8884 445455553 899999999987665443
No 169
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8.3e-18 Score=180.00 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=96.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hH
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YF 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~ 711 (968)
++.++++++| |++++|+||||||||||||+|+|+... .....|+|+....++ ..
T Consensus 15 ~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (229)
T cd03254 15 KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94 (229)
T ss_pred CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHH
Confidence 3568999998 899999999999999999999998521 111235565533211 11
Q ss_pred HHH---------------HhhcC-----------CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 712 DAI---------------MLHMK-----------SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 712 ~~i---------------~~~~~-----------~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
+.+ ...++ ...........+|+|+++...+++. +.+|+++||||||+|||+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~ 174 (229)
T cd03254 95 ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174 (229)
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 111 11111 1112223346899999987776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
...+. .++..+. .+.++|++||+++....++
T Consensus 175 ~~~l~-~~l~~~~-~~~tii~~sh~~~~~~~~d 205 (229)
T cd03254 175 EKLIQ-EALEKLM-KGRTSIIIAHRLSTIKNAD 205 (229)
T ss_pred HHHHH-HHHHHhc-CCCEEEEEecCHHHHhhCC
Confidence 88874 4445555 4899999999998865443
No 170
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.74 E-value=1.6e-17 Score=178.87 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=97.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hH
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YF 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~ 711 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++ ..
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 3578999998 899999999999999999999998521 112345666543211 11
Q ss_pred HHH---------------Hhhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 712 DAI---------------MLHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 712 ~~i---------------~~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
+++ .... +....+.....++|+|++|...++++ +.+|+++||||||+|+|+..
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 111 0111 11222234557899999997776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
...+... ++.+.+ |.++|++||+++.+..++
T Consensus 174 ~~~l~~~-l~~~~~-~~tiii~sH~~~~~~~~d 204 (237)
T cd03252 174 EHAIMRN-MHDICA-GRTVIIIAHRLSTVKNAD 204 (237)
T ss_pred HHHHHHH-HHHhcC-CCEEEEEeCCHHHHHhCC
Confidence 8887444 444554 899999999999875443
No 171
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=1.6e-17 Score=175.92 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=101.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------hhcCceeccCcCCcc---hH--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLMVPAESASIP---YF-- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------a~~g~~vp~~~~~~~---~~-- 711 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+.....+ ..
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~ 102 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLEN 102 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHH
Confidence 4579999999 899999999999999999999998521 111235665432211 11
Q ss_pred ----------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002090 712 ----------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIE 774 (968)
Q Consensus 712 ----------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~ 774 (968)
..++..++..+........+|.|+++...+++. +.+|+++||||||+|+|+.....+ ..+++
T Consensus 103 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 181 (214)
T PRK13543 103 LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV-NRMIS 181 (214)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHH
Confidence 123344555555566677899999987776655 899999999999999999877766 55666
Q ss_pred HHHhcCcEEEEeccChhhhh
Q 002090 775 TLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 775 ~l~~~g~~vl~~TH~~el~~ 794 (968)
.+.+.|.++|++||+++.+.
T Consensus 182 ~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 182 AHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred HHHhCCCEEEEEecChhhhh
Confidence 56667899999999998754
No 172
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.7e-17 Score=172.87 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=92.9
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-hhcC-----------------ceeccCcCCcc---hHHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-GICG-----------------LMVPAESASIP---YFDA 713 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-a~~g-----------------~~vp~~~~~~~---~~~~ 713 (968)
+.++++++| |++++|+||||||||||+|+|+|+... ...| .++|+....++ ..+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 578999998 899999999999999999999996421 1122 23444332211 1222
Q ss_pred HHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 714 i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
+.... ....+|+|++|...++++ +.+|+++|+|||++|+|+.....+ ..+++.+++.|.++|++||+++.
T Consensus 100 l~~~~--------~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 100 LRFSA--------LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred HHHHH--------HHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HHHHHHHHHcCCEEEEEEcCChH
Confidence 21100 011799999987776655 899999999999999999887777 55566666678999999999873
Q ss_pred --hhcccc
Q 002090 793 --FSLPLK 798 (968)
Q Consensus 793 --~~~~~~ 798 (968)
...+++
T Consensus 171 ~~~~~~d~ 178 (192)
T cd03232 171 SIFEKFDR 178 (192)
T ss_pred HHHhhCCE
Confidence 455443
No 173
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.7e-17 Score=186.49 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=103.9
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------h----hcCceeccCcC
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------G----ICGLMVPAESA 706 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a----~~g~~vp~~~~ 706 (968)
..+++|+|| |++++|+||||||||||+|+|+|++.. . +...++|++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999 899999999999999999999998521 0 12346776542
Q ss_pred --Ccc---h----------------------HHHHHhhcCCCC---CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 707 --SIP---Y----------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 707 --~~~---~----------------------~~~i~~~~~~~d---~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
..+ . +..++..+++.+ .+......+|+||+|...|+.+ +.+|+++|+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 111 0 123445556643 2456678899999997776655 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
||+|||+.....+...+.+...+.|.++|++|||++++ +++++.
T Consensus 180 Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri 224 (326)
T PRK11022 180 PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI 224 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 99999998888885444443334699999999999887 455543
No 174
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.73 E-value=1.8e-17 Score=197.97 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=112.2
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------hcCceeccCc
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------ICGLMVPAES 705 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------~~g~~vp~~~ 705 (968)
+.+.+. ++.++++++| |++++|+||||||||||||+|+|+.... ....|+|++.
T Consensus 17 l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 95 (510)
T PRK15439 17 ISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEP 95 (510)
T ss_pred EEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccC
Confidence 333443 4679999999 8999999999999999999999985210 1123667654
Q ss_pred CCcc---h-----------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 706 ASIP---Y-----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 706 ~~~~---~-----------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
..++ . +..++..+++.+.......++|+||+|...+++. +.+|+++||||||+|||+..
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~ 175 (510)
T PRK15439 96 LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAE 175 (510)
T ss_pred ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 3221 1 1234556677666677788999999998777665 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
...+ ..+++.+++.|.++|++||+.+.+ .++++...+.++
T Consensus 176 ~~~l-~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 176 TERL-FSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred HHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 8887 455555666799999999999876 345544333333
No 175
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.73 E-value=1.8e-17 Score=180.55 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=103.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------------------hcCce
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------------ICGLM 700 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------------------~~g~~ 700 (968)
++.++++++| |++++|+||||||||||+++|+|+.... +...|
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 4679999999 8999999999999999999999985210 11245
Q ss_pred eccCcCCcc---hHH----------------------HHHhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 701 VPAESASIP---YFD----------------------AIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 701 vp~~~~~~~---~~~----------------------~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
+|+....++ ..+ .++..++..+.. ......+|+|++|...++++ +.+|+++||
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 565432211 111 233445555443 55678899999997776665 899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
||||+|||+.....+ ..+++.+++.|+++|++||+.+++. ++++.
T Consensus 177 DEPt~~LD~~~~~~l-~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i 222 (257)
T PRK10619 177 DEPTSALDPELVGEV-LRIMQQLAEEGKTMVVVTHEMGFARHVSSHV 222 (257)
T ss_pred eCCcccCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 999999999888777 4555566667999999999998765 34443
No 176
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.3e-17 Score=179.17 Aligned_cols=138 Identities=16% Similarity=0.160 Sum_probs=97.4
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hHHH
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFDA 713 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~~~ 713 (968)
.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++ ..++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 68899888 899999999999999999999999621 111235565532211 1111
Q ss_pred H------------------------Hhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 714 I------------------------MLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 714 i------------------------~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
+ +..+ +..........++|+|++|...++++ +.+|+++||||||+|||+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1 1111 22222334456899999987776655 8999999999999999998888
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
.+ ..+++.+.+ +.++|++||+++....+++.
T Consensus 176 ~l-~~~l~~~~~-~~tii~~sh~~~~~~~~d~v 206 (234)
T cd03251 176 LV-QAALERLMK-NRTTFVIAHRLSTIENADRI 206 (234)
T ss_pred HH-HHHHHHhcC-CCEEEEEecCHHHHhhCCEE
Confidence 87 555555554 88999999999887654443
No 177
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.73 E-value=2.2e-17 Score=179.59 Aligned_cols=147 Identities=13% Similarity=0.064 Sum_probs=103.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------h----------------hcCceeccCcC-Ccc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------G----------------ICGLMVPAESA-SIP- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------a----------------~~g~~vp~~~~-~~~- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... + +...|+|++.. .+.
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 3578999998 899999999999999999999998532 0 12335666532 111
Q ss_pred ---h-------------------HHHHHhhcCCCC---CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 710 ---Y-------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 710 ---~-------------------~~~i~~~~~~~d---~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
. +..++..++..+ .+.....++|+|++|...++++ +.+|+++||||||+|+|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 174 (254)
T PRK10418 95 LHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVV 174 (254)
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 0 112334445543 2355667899999997776655 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccccccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAY 804 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~ 804 (968)
....+...+.+...+.|.++|++||+++.. +.+++...+.+
T Consensus 175 ~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~ 216 (254)
T PRK10418 175 AQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSH 216 (254)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEEC
Confidence 877774444443344589999999999876 34554433333
No 178
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.4e-17 Score=181.86 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=101.5
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCc--CCc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAES--ASI 708 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~--~~~ 708 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+.. ..+
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 368999998 899999999999999999999998511 01124667653 111
Q ss_pred --chH---------------------HHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 --PYF---------------------DAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 --~~~---------------------~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
... +.++..++..+ ........+|+|++|...++++ +.+|+++||||||+|||+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 111 12233455542 3456678899999997776655 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
....+ ..++..+++.|.|+|++||+.+++. ++++.
T Consensus 180 ~~~~l-~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 180 GRKEL-MTLFKKLHQSGMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred HHHHH-HHHHHHHHHCCCEEEEEeccHHHHHHhCCEE
Confidence 87777 4445555556899999999998763 44443
No 179
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.73 E-value=2.2e-17 Score=176.21 Aligned_cols=141 Identities=20% Similarity=0.129 Sum_probs=100.5
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------hcC-ceeccCcC----C------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------ICG-LMVPAESA----S------ 707 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la--------------~~g-~~vp~~~~----~------ 707 (968)
+++.++++++| |++++|+||||||||||+|+|+|+.... +.+ .+.|.... .
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~ 112 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLL 112 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHc
Confidence 45779999998 8999999999999999999999985211 000 11111000 0
Q ss_pred -cc------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 002090 708 -IP------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779 (968)
Q Consensus 708 -~~------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~ 779 (968)
.. ....++..++..+........+|+|++|...+++. +.+|+++||||||+|||+.....+...+. .+.+.
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~-~~~~~ 191 (224)
T cd03220 113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR-ELLKQ 191 (224)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhC
Confidence 00 01223444566666667778999999997766655 89999999999999999988888855544 45555
Q ss_pred CcEEEEeccChhhhh-cccc
Q 002090 780 GCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 780 g~~vl~~TH~~el~~-~~~~ 798 (968)
|.++|++||+.+.+. .+++
T Consensus 192 ~~tiii~sH~~~~~~~~~d~ 211 (224)
T cd03220 192 GKTVILVSHDPSSIKRLCDR 211 (224)
T ss_pred CCEEEEEeCCHHHHHHhCCE
Confidence 899999999988754 4443
No 180
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=1.6e-17 Score=174.65 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=98.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhc-------CceeccCcCCcc--hHHH------------
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------GLMVPAESASIP--YFDA------------ 713 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~-------g~~vp~~~~~~~--~~~~------------ 713 (968)
+.++++++| |++++|+||||||||||+|+|+|+...... ..|+|+....++ ..++
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 369999998 899999999999999999999998632111 246666532211 1111
Q ss_pred --HHhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 002090 714 --IMLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779 (968)
Q Consensus 714 --i~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~ 779 (968)
....++. ..........+|.++++...+++. +.+|+++|+|||++|+|+.....+...+++.+.+.
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~ 177 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC
Confidence 1111121 112233456799999987776655 89999999999999999988777866666655555
Q ss_pred CcEEEEeccChhhhhcc
Q 002090 780 GCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 780 g~~vl~~TH~~el~~~~ 796 (968)
|.++|++||+++....+
T Consensus 178 ~~tvi~~sh~~~~~~~~ 194 (204)
T cd03250 178 NKTRILVTHQLQLLPHA 194 (204)
T ss_pred CCEEEEEeCCHHHHhhC
Confidence 89999999999886643
No 181
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.73 E-value=2e-17 Score=178.11 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=106.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcc---h--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---Y-- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~---~-- 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 4579999998 899999999999999999999998521 112235665432221 0
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
++.++..++..+........+|.|++|...++++ +.+|+++|||||++|+|+.....+.
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~- 170 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR- 170 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 1234455566555566667899999987766655 8999999999999999998877774
Q ss_pred HHHHHHHhc-CcEEEEeccChhhh-hcccccccccccee
Q 002090 771 SIIETLDNI-GCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 771 ~ll~~l~~~-g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
.+++.+.+. ++++|++||+++.+ ..+++...+.++.+
T Consensus 171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 455555554 89999999999875 45555444444433
No 182
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.73 E-value=1.1e-17 Score=179.23 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=96.4
Q ss_pred eeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----h------------------hcCceeccCcC--C---cch
Q 002090 662 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G------------------ICGLMVPAESA--S---IPY 710 (968)
Q Consensus 662 ~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----a------------------~~g~~vp~~~~--~---~~~ 710 (968)
+++++| |++++|+||||||||||+|+|+|+... . +...++|++.. . ...
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 456666 899999999999999999999998643 0 11235555531 1 110
Q ss_pred ---------------------HHHHHhhcCCC---CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 711 ---------------------FDAIMLHMKSY---DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 711 ---------------------~~~i~~~~~~~---d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
+..++..++.. +........+|+|++|...+++. +.+|+++||||||+|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 11223334444 23455677899999997776655 899999999999999999887
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
..+...+.+...+.|.|+|++||+++.+. .+++.
T Consensus 162 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 196 (230)
T TIGR02770 162 ARVLKLLRELRQLFGTGILLITHDLGVVARIADEV 196 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 77744444433335899999999998764 45543
No 183
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=196.52 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=109.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~--- 709 (968)
++.++++++| |++++|+||||||||||||+|+|+... .+...++|+....++
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 4679999999 899999999999999999999998521 111235665422110
Q ss_pred h-------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 710 Y-------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 710 ~-------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
. +..++..++..+......+++|+||+|...++++ +.+|+++||||||+|||+.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 0 1234555666666667778999999998777655 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccce
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 806 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~ 806 (968)
....+ ..+++.+++.|.++|++||+.+.+. ++++.-.+.++.
T Consensus 176 ~~~~l-~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~ 218 (501)
T PRK10762 176 ETESL-FRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218 (501)
T ss_pred HHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 88888 5556666667899999999988764 555444443443
No 184
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=1.3e-17 Score=162.01 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=112.5
Q ss_pred CCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccCcCCc---
Q 002090 656 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASI--- 708 (968)
Q Consensus 656 ~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~~~~~--- 708 (968)
.++..++|++|| |++.+||||+|||||||+|++|.+.- ..|..+|+-+.++.+
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 467889999999 89999999999999999999999852 223333443333322
Q ss_pred -------ch-----------HHHHHhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 709 -------PY-----------FDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 709 -------~~-----------~~~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
|+ +-.++.+++..+.. .+....+|+|.+|+..+++. ..-|+++||||||+.||+.....|
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 21 12355666666654 45567789999997777766 789999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhh-hccccccccccce
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
-..|.++.+++...++.+|||.+.+ ..+++.-.+.-++
T Consensus 173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCc
Confidence 7777788888899999999998873 4444444433333
No 185
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.7e-17 Score=176.92 Aligned_cols=138 Identities=18% Similarity=0.173 Sum_probs=96.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hH
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YF 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~ 711 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ ..
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 4568999888 899999999999999999999998621 111235555533221 11
Q ss_pred HHH---------------HhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 712 DAI---------------MLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 712 ~~i---------------~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
+.+ ....+. ..........+|+|+++...++++ +.+|+++||||||+|+|+..
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111 011111 111222345799999987776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
...+. .++..+++ |.++|++||+.+....++
T Consensus 173 ~~~l~-~~l~~~~~-~~tiii~sh~~~~~~~~d 203 (236)
T cd03253 173 EREIQ-AALRDVSK-GRTTIVIAHRLSTIVNAD 203 (236)
T ss_pred HHHHH-HHHHHhcC-CCEEEEEcCCHHHHHhCC
Confidence 77774 44555566 899999999998876543
No 186
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.2e-17 Score=186.00 Aligned_cols=141 Identities=20% Similarity=0.173 Sum_probs=102.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------------hhcCceeccCc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------------GICGLMVPAES 705 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------------a~~g~~vp~~~ 705 (968)
...+++++|| |++++|+|+||||||||+|+|+|+... .+...+||++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 3579999999 899999999999999999999998520 01234677654
Q ss_pred CC--cc---h---------------------------HHHHHhhcCCCCC---ccCCccchHHHHHHHHHHHHh-CCCCc
Q 002090 706 AS--IP---Y---------------------------FDAIMLHMKSYDS---PADGKSSFQVEMSEIRSIVTA-TTSRS 749 (968)
Q Consensus 706 ~~--~~---~---------------------------~~~i~~~~~~~d~---~~~~~s~fs~~~~~~~~il~~-a~~~~ 749 (968)
.. .+ . +..++..+++.+. +......+|+||+|...|+.+ +.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 21 11 0 1123344555432 345567899999997776655 89999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 750 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 750 LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
++|+||||+|||+.....+.. ++..+.+ .|.|+||+|||++++. ++++.
T Consensus 179 llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred EEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 999999999999988888844 4445555 5999999999998874 45543
No 187
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.73 E-value=2.3e-17 Score=176.34 Aligned_cols=140 Identities=16% Similarity=0.240 Sum_probs=99.1
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH---hh-----------------hcCceeccCcCCcc---hH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LG-----------------ICGLMVPAESASIP---YF 711 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~---la-----------------~~g~~vp~~~~~~~---~~ 711 (968)
+.++++++| |++++|+||||||||||+|+|+|+.. .. +...++|++...++ ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 678999888 89999999999999999999999864 21 11235565533221 11
Q ss_pred HH-------------------------HHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 712 DA-------------------------IMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 712 ~~-------------------------i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
++ ++..++..+........+|+|++|...+++. +.+|+++|||||++|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 11 1222233333344557889999987766555 889999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccCh--hhhhccccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKI 799 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~--el~~~~~~~ 799 (968)
..+.. ++..+.+.|.|+|++||+. ++.+.+++.
T Consensus 180 ~~~~~-~l~~~~~~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 180 LNLVS-TLSQLARRNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred HHHHH-HHHHHHHCCCEEEEEecCCCHHHHHhCCEE
Confidence 88754 5555556689999999997 455665544
No 188
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.8e-17 Score=182.54 Aligned_cols=138 Identities=15% Similarity=0.070 Sum_probs=102.2
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC-Cc---ch
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---PY 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~-~~---~~ 710 (968)
..++++++| |++++|+||||||||||+++|+|+... .+...|+|+... .+ ..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence 458999998 899999999999999999999998621 112345666531 11 11
Q ss_pred HH---------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 711 FD---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 711 ~~---------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
.+ .++..++..+........+|+|++|...++++ +.+|+++||||||+|||+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 23334455455556677899999998777666 899999999999999999888888
Q ss_pred HHHHHHHHHh-cCcEEEEeccChhhhhccc
Q 002090 769 AGSIIETLDN-IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 769 ~~~ll~~l~~-~g~~vl~~TH~~el~~~~~ 797 (968)
.. +++.+.+ .|.|+|++||+++.+..++
T Consensus 180 ~~-~l~~l~~~~g~tiil~sH~~~~~~~~d 208 (277)
T PRK13642 180 MR-VIHEIKEKYQLTVLSITHDLDEAASSD 208 (277)
T ss_pred HH-HHHHHHHhcCCEEEEEeCCHHHHHhCC
Confidence 54 5555555 4899999999999876444
No 189
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.73 E-value=2.3e-17 Score=172.12 Aligned_cols=132 Identities=23% Similarity=0.272 Sum_probs=92.6
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--Hhhh-----------------cCceeccCcCCc---chHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LLGI-----------------CGLMVPAESASI---PYFD 712 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--~la~-----------------~g~~vp~~~~~~---~~~~ 712 (968)
+.++++++| |++++|+||||||||||+|+|+|+. .... ...++|+....+ ...+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 679999999 8999999999999999999999986 3211 112344432221 1112
Q ss_pred HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 713 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 713 ~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+.... ....+|+|++|...++++ +.+|+++|||||++|+|+.....+ ..+++.+.++|.|+|++||+++
T Consensus 102 ~i~~~~--------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 102 TLMFAA--------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV-MSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHH--------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCch
Confidence 211100 011789999987766655 899999999999999999887777 5555556666999999999985
Q ss_pred --hhhccccc
Q 002090 792 --IFSLPLKI 799 (968)
Q Consensus 792 --l~~~~~~~ 799 (968)
+.+.+++.
T Consensus 173 ~~~~~~~d~v 182 (194)
T cd03213 173 SEIFELFDKL 182 (194)
T ss_pred HHHHHhcCEE
Confidence 33444443
No 190
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.72 E-value=3.1e-17 Score=176.67 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=96.8
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFD 712 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~~ 712 (968)
+.++++++| |++++|+||||||||||+++|+|+... .+...|+|+....++ ..+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 468899888 899999999999999999999998521 112335555432211 111
Q ss_pred HHH---------------hhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 713 AIM---------------LHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 713 ~i~---------------~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.+. ... +...........+|+|+++...+++. +.+|+++||||||+|||+...
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~ 175 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 110 001 11222334457899999997777665 889999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
..+ ..+++.+. .|.++|++||+++++..+++
T Consensus 176 ~~l-~~~l~~~~-~g~~vi~~sh~~~~~~~~d~ 206 (238)
T cd03249 176 KLV-QEALDRAM-KGRTTIVIAHRLSTIRNADL 206 (238)
T ss_pred HHH-HHHHHHhc-CCCEEEEEeCCHHHHhhCCE
Confidence 877 45555555 68999999999988765443
No 191
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=1.4e-17 Score=176.83 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=112.0
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH------------------------hhhcCceeccCcCCcchH
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------LGICGLMVPAESASIPYF 711 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~------------------------la~~g~~vp~~~~~~~~~ 711 (968)
.-++|++| |++++|+|-+|||||||+|++++++- -.+..++|+|..+.+|+-
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 34567777 89999999999999999999999861 123345677777766653
Q ss_pred ------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 712 ------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 712 ------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
...+..+|..+.-......+|+||+|..-++++ +++|+++|||||+|.|||.-+.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 245667788888888889999999999887776 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
.+-..+++.-++.++|++|+|||++.+-
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAl 229 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEAL 229 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHH
Confidence 9988888877778999999999998863
No 192
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.72 E-value=2.3e-17 Score=185.60 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=103.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcC--Ccc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SIP 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~--~~~ 709 (968)
..+++++|| |++++|+|+||||||||+|+|+|+... .....+|||+.. ..+
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 568999999 899999999999999999999998511 112346776641 111
Q ss_pred ---hHH-----------------------HHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 710 ---YFD-----------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 710 ---~~~-----------------------~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
..+ .++..++.. +........+|+||+|...|+.+ +.+|+|+|+||||+|||
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 111 233444553 23456678899999997776655 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 762 TAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+.....+.. ++..+.+ .|.++|++|||++++. ++++.
T Consensus 194 ~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 194 VSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred HHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 988888855 4445544 5899999999999875 45543
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.72 E-value=3.2e-17 Score=179.66 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=103.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcC--Cc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SI 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~--~~ 708 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... ..
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 4679999999 899999999999999999999998511 112335665431 10
Q ss_pred ---c----------------------hHHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 709 ---P----------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 709 ---~----------------------~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
. .++.++..++.. +........+|+|++|...+++. +.+|+++||||||+|||
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 0 012344455654 34556677899999987766555 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccc
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKN 801 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~ 801 (968)
+.....+...+.+...+.+.++|++||+.+... ++++.-.
T Consensus 184 ~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~ 224 (268)
T PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMV 224 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEE
Confidence 988777744444433345899999999998764 5554433
No 194
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.72 E-value=3e-17 Score=173.73 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=98.7
Q ss_pred eeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcc---hH-----
Q 002090 662 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---YF----- 711 (968)
Q Consensus 662 ~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~---~~----- 711 (968)
+.+++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ ..
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 456666 899999999999999999999998521 112336666532221 11
Q ss_pred ----------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002090 712 ----------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIE 774 (968)
Q Consensus 712 ----------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~ 774 (968)
..++..+++.+........+|+|++|...++++ +.+|+++||||||+|+|+.....+...+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ 173 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 123444555555556667899999997777655 899999999999999999888887544444
Q ss_pred HHHhcCcEEEEeccChhhh-hccccc
Q 002090 775 TLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 775 ~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
...+.+.|+|++||+.++. +.+++.
T Consensus 174 ~~~~~~~tii~vsh~~~~~~~~~d~v 199 (213)
T TIGR01277 174 LCSERQRTLLMVTHHLSDARAIASQI 199 (213)
T ss_pred HHHhcCCEEEEEeCCHHHHHhhcCeE
Confidence 4344589999999999875 344443
No 195
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.72 E-value=2.6e-17 Score=179.42 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=106.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-----------------hh------------hcCceeccC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-----------------LG------------ICGLMVPAE 704 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-----------------la------------~~g~~vp~~ 704 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. +. +...|+|+.
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 3578999998 89999999999999999999999851 11 113466765
Q ss_pred cCC-----cch----------------------HHHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SAS-----IPY----------------------FDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~-----~~~----------------------~~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
... ... ++.++..++..+ .......++|+|++|...++++ +.+|+++||||
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 420 000 112344556643 4567778999999997776655 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 805 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~ 805 (968)
||+|||+.....+...+.+...+.|.++|++||+.+.+. .+++.-.+.++
T Consensus 178 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228 (258)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999988777755444433445899999999998875 45544333333
No 196
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3e-17 Score=196.23 Aligned_cols=147 Identities=13% Similarity=0.144 Sum_probs=108.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------h-hcCceeccCcCCcc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------G-ICGLMVPAESASIP--- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a-~~g~~vp~~~~~~~--- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... . +...|+|+....++
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence 4679999999 899999999999999999999998621 0 11345666432111
Q ss_pred h----------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002090 710 Y----------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGT 760 (968)
Q Consensus 710 ~----------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~Gl 760 (968)
. +..++..++..+......+++|+||+|...+++. +.+|+++||||||+||
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 1 1224445566666667778999999998877665 8999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccc
Q 002090 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 805 (968)
Q Consensus 761 D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~ 805 (968)
|+.....+ ..+++.+++.|.|+|++||+.+.+. ++++...+.++
T Consensus 177 D~~~~~~l-~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 177 TNKEVDYL-FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred CHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99887777 5556566667999999999988764 45544333333
No 197
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.72 E-value=2.1e-17 Score=181.07 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=99.7
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcC--Ccc---
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA--SIP--- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~--~~~--- 709 (968)
+.++++++| |++++|+||||||||||||+|+|+... .+...|+|+... ..+
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 469999999 899999999999999999999999621 112335666431 000
Q ss_pred ----------------------hHHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 710 ----------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 710 ----------------------~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.+..++..+++. +......+.+|+||+|...++.+ +.+|+++||||||+|||+...
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 012234455553 33344567899999997776654 899999999999999999887
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
..+...+.+...+.|.++|++||+.+.+. ++++
T Consensus 186 ~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~ 219 (267)
T PRK15112 186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQ 219 (267)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCE
Confidence 77744444433345899999999998765 3443
No 198
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.72 E-value=1.4e-17 Score=174.63 Aligned_cols=134 Identities=20% Similarity=0.282 Sum_probs=95.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH-HhhhcC----------------------ceeccCcCCcch
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-LLGICG----------------------LMVPAESASIPY 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~-~la~~g----------------------~~vp~~~~~~~~ 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+. .....| .|+|+....
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--- 88 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE--- 88 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh---
Confidence 4578999988 8999999999999999999999983 111122 123332211
Q ss_pred HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 711 ~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
+..+...+.+......+|+|++|...++++ +.+|+++||||||+|+|+.....+ ..++..+.+.+.|+|++||+
T Consensus 89 ----~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~~~~tiii~sh~ 163 (200)
T cd03217 89 ----IPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLREEGKSVLIITHY 163 (200)
T ss_pred ----ccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHCCCEEEEEecC
Confidence 111111122222235799999987776655 889999999999999999888877 55555566668999999999
Q ss_pred hhhhh--ccccc
Q 002090 790 HGIFS--LPLKI 799 (968)
Q Consensus 790 ~el~~--~~~~~ 799 (968)
++... .+++.
T Consensus 164 ~~~~~~~~~d~i 175 (200)
T cd03217 164 QRLLDYIKPDRV 175 (200)
T ss_pred HHHHHHhhCCEE
Confidence 99876 45544
No 199
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.6e-17 Score=196.52 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=108.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCc--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASI-- 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~-- 708 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...+
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 5679999999 899999999999999999999998642 01123555543211
Q ss_pred -ch------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 709 -PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 709 -~~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
.. +..++..++..+......+++|+||+|...++++ +.+|+++||||||+|||+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 00 1234455666666667778999999998777665 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccce
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 806 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~ 806 (968)
.....+ ..++..+.+.|.++|++||+.+.+. ++++.-.+.++.
T Consensus 177 ~~~~~l-~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~ 220 (506)
T PRK13549 177 SETAVL-LDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220 (506)
T ss_pred HHHHHH-HHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCE
Confidence 888888 4555556667899999999988764 455443333433
No 200
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.2e-17 Score=177.87 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=99.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+...
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 4679999999 899999999999999999999997521 011235555432
Q ss_pred Ccc--hH---------------------HHHHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 707 SIP--YF---------------------DAIMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 707 ~~~--~~---------------------~~i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
.++ .. ..++..++.. +.+......+|+|++|...++++ +.+|+++||||||+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 211 11 1123333332 22345567899999997776665 88999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
|+|+.....+ ..+++.+.+ +.|+|++||+.+.+ +.+++.
T Consensus 184 ~LD~~~~~~l-~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i 223 (258)
T PRK14268 184 ALDPISTARI-EDLIMNLKK-DYTIVIVTHNMQQAARISDYT 223 (258)
T ss_pred ccCHHHHHHH-HHHHHHHhh-CCEEEEEECCHHHHHHhCCEE
Confidence 9999888887 555555554 79999999999876 444443
No 201
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=3e-17 Score=169.45 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=89.1
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh---------------------cCceeccCcCCcchHHHHH
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------CGLMVPAESASIPYFDAIM 715 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~---------------------~g~~vp~~~~~~~~~~~i~ 715 (968)
++++++| |++++|+||||||||||+|+|+|+..... ...|+|++... +.++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~----~~~~ 90 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR----EGLV 90 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCccc----Cccc
Confidence 8888888 89999999999999999999999853211 11123332100 0011
Q ss_pred hhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-
Q 002090 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF- 793 (968)
Q Consensus 716 ~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~- 793 (968)
......+++.... .+|+|++|...++++ +.+|+++|||||++|+|+.....+ ..+++.+.+.|.++|++||+++.+
T Consensus 91 ~~~t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 91 LDLSVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI-YRLIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred CCCcHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 1111222221110 189999987766655 899999999999999999888877 455555556689999999998754
Q ss_pred hccc
Q 002090 794 SLPL 797 (968)
Q Consensus 794 ~~~~ 797 (968)
++++
T Consensus 169 ~~~d 172 (182)
T cd03215 169 GLCD 172 (182)
T ss_pred HhCC
Confidence 3344
No 202
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.72 E-value=3e-17 Score=177.92 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=100.8
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCc---c-----
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASI---P----- 709 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~---~----- 709 (968)
++++++| |++++|+||||||||||+|+|+|+... .+...|+|+..... .
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 6788888 899999999999999999999998511 01123566543211 0
Q ss_pred ---------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CC-------CCcEEEEeCCCCCCCHHHHH
Q 002090 710 ---------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TT-------SRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 710 ---------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~-------~~~LlLlDEp~~GlD~~~~~ 766 (968)
.++.++..++..+........+|+|++|...++++ +. +|+++|||||++|||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 11334555666665667778899999998877766 43 66999999999999998877
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
.+ ..+++.+.+.|.|+|++||+.+.+ .++++.
T Consensus 171 ~l-~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i 203 (248)
T PRK03695 171 AL-DRLLSELCQQGIAVVMSSHDLNHTLRHADRV 203 (248)
T ss_pred HH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 77 555555666689999999998854 455433
No 203
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.72 E-value=2.4e-17 Score=162.34 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=102.5
Q ss_pred eEee--ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc------------------eeccCcCCcch-------------
Q 002090 664 TVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGL------------------MVPAESASIPY------------- 710 (968)
Q Consensus 664 ~i~l--g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~------------------~vp~~~~~~~~------------- 710 (968)
|+++ |++++|+||+||||||||+.|+|....++... +++++...+..
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 4444 89999999999999999999999975443222 12222221111
Q ss_pred -----------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 002090 711 -----------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 778 (968)
Q Consensus 711 -----------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~ 778 (968)
++.+..++|..+...+-..++|+|++|...+.+. +.+..++|||||++.|||.-+..+...+.....+
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 2234556666666666667889999998776655 8899999999999999999999996666666677
Q ss_pred cCcEEEEeccChhhhh-ccccccccccce
Q 002090 779 IGCLGIVSTHLHGIFS-LPLKIKNAAYKA 806 (968)
Q Consensus 779 ~g~~vl~~TH~~el~~-~~~~~~~~~~~~ 806 (968)
++.|++|+||..+.+. ++++...+.++.
T Consensus 179 ~~~TllmVTH~~~Da~~ia~~~~fl~~Gr 207 (231)
T COG3840 179 RKMTLLMVTHHPEDAARIADRVVFLDNGR 207 (231)
T ss_pred hCCEEEEEeCCHHHHHHhhhceEEEeCCE
Confidence 8999999999987654 444333333333
No 204
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.8e-17 Score=182.16 Aligned_cols=140 Identities=10% Similarity=0.025 Sum_probs=99.6
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------------------------hcCceeccCcC--Cc
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------------ICGLMVPAESA--SI 708 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------------------------~~g~~vp~~~~--~~ 708 (968)
.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+... .+
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 58999999 8999999999999999999999986210 01235666531 11
Q ss_pred --chH---------------------HHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 --PYF---------------------DAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 --~~~---------------------~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
... +.++..++.. +......+.+|+|++|...++++ +.+|+++||||||+|||+.
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 111 1233344552 33455667899999997776655 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
....+...+.+...+.|+++|++||+.+.+ ..+++.
T Consensus 185 ~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 877774444443344589999999999865 445543
No 205
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=2.3e-17 Score=175.65 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=97.6
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hH-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YF- 711 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~- 711 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ ..
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 579999998 899999999999999999999998511 112235666543221 11
Q ss_pred -------------HHHHhhcCCCCC-----------ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 712 -------------DAIMLHMKSYDS-----------PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 712 -------------~~i~~~~~~~d~-----------~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
...+..++..+. .......+|.|++|...+++. +.+|+++|||||++|||+....
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~ 176 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 112222232222 224567899999997776665 8999999999999999998877
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.+ ..+++.+.+ +.++|++||+.+....++
T Consensus 177 ~l-~~~l~~~~~-~~tii~~sh~~~~~~~~d 205 (221)
T cd03244 177 LI-QKTIREAFK-DCTVLTIAHRLDTIIDSD 205 (221)
T ss_pred HH-HHHHHHhcC-CCEEEEEeCCHHHHhhCC
Confidence 77 445555544 689999999998876543
No 206
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7.2e-17 Score=176.85 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=101.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAES 705 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~ 705 (968)
+++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+..
T Consensus 31 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 35679999999 899999999999999999999998631 11124566543
Q ss_pred CCcc--hHHH----------------------HHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 706 ASIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 706 ~~~~--~~~~----------------------i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
..++ ..++ ++..++.. +.+.....++|+|++|...++++ +.+|+++|||||
T Consensus 111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 190 (267)
T PRK14237 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190 (267)
T ss_pred ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2221 1111 12233332 22345667899999997776655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNA 802 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~ 802 (968)
|+|||+.....+. .++..+.+ +.++|++||+.+.+ +++++...+
T Consensus 191 t~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 191 ASALDPISTMQLE-ETMFELKK-NYTIIIVTHNMQQAARASDYTAFF 235 (267)
T ss_pred cccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEE
Confidence 9999998877774 45555554 78999999999875 455544333
No 207
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.72 E-value=2.7e-17 Score=174.79 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=101.8
Q ss_pred ccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCc
Q 002090 654 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAES 705 (968)
Q Consensus 654 ~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~ 705 (968)
.+.++..++++++| |++++|+|||||||||||++|+|+... .+...|+|+..
T Consensus 9 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 88 (218)
T cd03290 9 SWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP 88 (218)
T ss_pred ecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCC
Confidence 33445678999998 899999999999999999999998511 01123556554
Q ss_pred CCc--chHH--------------HHHhhcCCCC-----------CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 706 ASI--PYFD--------------AIMLHMKSYD-----------SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 706 ~~~--~~~~--------------~i~~~~~~~d-----------~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
..+ ...+ .+...++..+ ........+|+|++|...+++. +.+|+++||||||
T Consensus 89 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 168 (218)
T cd03290 89 WLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPF 168 (218)
T ss_pred ccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 221 1111 1222222211 1123457899999997777665 8999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHhcCcEEEEeccChhhhhcc
Q 002090 758 RGTETAKGTCIAGS-IIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 758 ~GlD~~~~~~i~~~-ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
+|||+.....+... +++.+++.|.|+|++||+.+....+
T Consensus 169 ~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~ 208 (218)
T cd03290 169 SALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHA 208 (218)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhC
Confidence 99999888888663 7777777789999999999876543
No 208
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=2.2e-17 Score=168.89 Aligned_cols=121 Identities=13% Similarity=0.064 Sum_probs=83.7
Q ss_pred CceeeeeE-ee--ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHH
Q 002090 658 GSAVHNTV-DM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734 (968)
Q Consensus 658 ~~~v~~~i-~l--g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~ 734 (968)
++.++++. ++ |++++|+||||||||||+|+|+|+.... .|...-.. ..+.+.. +.. .+|++
T Consensus 12 ~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g-~~i~~~~---------q~~-----~LSgG 75 (177)
T cd03222 12 VFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDG-ITPVYKP---------QYI-----DLSGG 75 (177)
T ss_pred CEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECC-EEEEEEc---------ccC-----CCCHH
Confidence 34555553 33 8999999999999999999998875322 22211110 0011110 000 18999
Q ss_pred HHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 735 MSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 735 ~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
++|...+++. +.+|+++||||||+|+|+.....+...+.+...+.+.++|++||+++...
T Consensus 76 q~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 76 ELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 9987776655 88999999999999999988888855555443333489999999998765
No 209
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.72 E-value=2.9e-17 Score=175.51 Aligned_cols=137 Identities=14% Similarity=0.129 Sum_probs=98.6
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFD 712 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~~ 712 (968)
..++++++| |++++|+||||||||||+++|+|+... .+...++|+....++ ..+
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~ 106 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD 106 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence 468999998 899999999999999999999998521 111235555432110 001
Q ss_pred ------------------------HHHhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 713 ------------------------AIMLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 713 ------------------------~i~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
.++..+ +....+......+|+|++|...+++. +.+|+++||||||+|+|+...
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 112223 44444556677899999987776655 899999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
..+...+. .+.+ +.|+|++||+++++..++
T Consensus 187 ~~l~~~l~-~~~~-~~tii~~sh~~~~~~~~d 216 (226)
T cd03248 187 QQVQQALY-DWPE-RRTVLVIAHRLSTVERAD 216 (226)
T ss_pred HHHHHHHH-HHcC-CCEEEEEECCHHHHHhCC
Confidence 88844444 4554 689999999998875433
No 210
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.72 E-value=3e-17 Score=186.73 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=103.5
Q ss_pred eEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCcc---h--
Q 002090 664 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP---Y-- 710 (968)
Q Consensus 664 ~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~~---~-- 710 (968)
+++| |++++|+||||||||||||+|+|+... .+...++|+....++ .
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 6777 899999999999999999999998521 011235666543221 1
Q ss_pred -----------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 002090 711 -----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSI 772 (968)
Q Consensus 711 -----------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~l 772 (968)
++.++..+++.+.......++|+||+|...++++ +.+|+++||||||+|||+.....+...+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 1234455666666667778999999997776665 8999999999999999998888885554
Q ss_pred HHHHHhcCcEEEEeccChhhh-hcccccccccccee
Q 002090 773 IETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 773 l~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
.+...+.|.|+|++||+.+.+ .++++...+.++.+
T Consensus 175 ~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 175 ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210 (354)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 444344589999999999876 34555444444433
No 211
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=5e-17 Score=182.06 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=104.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------------------------hcC
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------------------ICG 698 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------------------------~~g 698 (968)
..++++++| |++++|+||||||||||+|+|+|+.... +..
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 469999999 8999999999999999999999985210 112
Q ss_pred ceeccCcC--Cc--ch---------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEE
Q 002090 699 LMVPAESA--SI--PY---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLV 751 (968)
Q Consensus 699 ~~vp~~~~--~~--~~---------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~Ll 751 (968)
.++++... .+ .. +..++..++.. +.......++|+|++|+..+++. +.+|+++
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL 198 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 35665431 11 11 11233445664 34566678899999998777666 8999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccc
Q 002090 752 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKN 801 (968)
Q Consensus 752 LlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~ 801 (968)
||||||+|||+.....+ ..++..+.++|.|+|++||+++.+ ..+++...
T Consensus 199 LLDEPtsgLD~~~~~~l-~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 199 IFDEPTAGLDPKGEHEM-MQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred EEECCccCCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 99999999999888887 455555666799999999999865 55654433
No 212
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.5e-17 Score=170.77 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=102.4
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceecc-------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPA------- 703 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~------- 703 (968)
+++.++.|+++ |+-++|+|||||||||||++++|-... .++|..-|+
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 67899999999 899999999999999999999997421 122221110
Q ss_pred -Cc----------CCc------------chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 704 -ES----------ASI------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 704 -~~----------~~~------------~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
.. +.+ .....+...+++..-..+...++|.|++++..|.++ +.+|.|+|||||++|
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G 201 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 00 001 112245566777776677788999999999888877 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh
Q 002090 760 TETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS 794 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~ 794 (968)
+|...+..+...+.+.... .+.++|++||+.|.+-
T Consensus 202 LDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 202 LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred CChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcc
Confidence 9998887775555554433 3788999999887754
No 213
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.5e-17 Score=183.84 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=104.9
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcC--Ccc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SIP 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~--~~~ 709 (968)
..++++++| |++++|+|+||||||||+++|+|+... .....+||++.. ..+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 478999999 899999999999999999999998511 112346776541 111
Q ss_pred -------------------------hHHHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 710 -------------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 710 -------------------------~~~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
.+..++..+++.+ ........+|+||+|...|+.+ +.+|++||+||||+|||+
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 0123445556642 3456678999999997776655 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
.....+...+.+...+.|.++|++|||++++. ++++.
T Consensus 188 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 188 SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 88888855555544446999999999999875 45543
No 214
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=4.4e-17 Score=170.13 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=98.6
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----------------hcCceeccCcCCc---ch-----
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLMVPAESASI---PY----- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----------------~~g~~vp~~~~~~---~~----- 710 (968)
+.+++ ++| |++++|+||||||||||+|+|+|+.... +...++|+..... ..
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 92 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHH
Confidence 44554 887 8999999999999999999999985211 0112444432111 11
Q ss_pred -----------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 002090 711 -----------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 778 (968)
Q Consensus 711 -----------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~ 778 (968)
...++..++..+......+.+|+|+++...++++ +.+|+++||||||+|+|+.....+ ..+++...+
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~~ 171 (195)
T PRK13541 93 FWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL-NNLIVMKAN 171 (195)
T ss_pred HHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh
Confidence 1223344566555666778899999987776655 889999999999999999887776 455555556
Q ss_pred cCcEEEEeccChhhhhccc
Q 002090 779 IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 779 ~g~~vl~~TH~~el~~~~~ 797 (968)
.|.++|++||+.+....++
T Consensus 172 ~~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 172 SGGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred CCCEEEEEeCCccccchhh
Confidence 7899999999988766544
No 215
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.71 E-value=4.6e-17 Score=177.00 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=102.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------h------------hcCceeccC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------G------------ICGLMVPAE 704 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------a------------~~g~~vp~~ 704 (968)
+..++++++| |++++|+||||||||||+|+|+|+... . +...++|+.
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 3568999998 899999999999999999999998511 0 112455554
Q ss_pred cCC-----cch----------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SAS-----IPY----------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~-----~~~----------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
... ... +..++..++.. .........+|+|++|...++++ +.+|+++||||
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE 174 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 310 000 11234445554 24556677899999997776665 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
||+|||+.....+...+.+...+.|.++|++||+.+.+. .+++
T Consensus 175 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~ 218 (253)
T TIGR02323 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQR 218 (253)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 999999988888855555544456899999999998765 4443
No 216
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.2e-17 Score=176.00 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=98.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--h-------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--l-------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|+...
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 4579999998 89999999999999999999999741 0 011235555432
Q ss_pred Ccc--hHHHH----------------------HhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~i----------------------~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+++ +..++..+ .+.....++|+|++|...++++ +.+|+++||||||
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 221 11111 12223321 2244567899999997776655 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+|||+.....+ ..++..+++ +.++|++||+.+.+ +++++.
T Consensus 178 ~~LD~~~~~~l-~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 178 SALDPIATQKI-EELIHELKA-RYTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCeEEEEEecHHHHHHhCCEE
Confidence 99999888887 445555554 78999999999876 445443
No 217
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.71 E-value=3.4e-17 Score=194.87 Aligned_cols=141 Identities=12% Similarity=0.104 Sum_probs=105.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------hcCceeccCcCC------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESAS------ 707 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------~~g~~vp~~~~~------ 707 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...++|+....
T Consensus 15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence 4568999998 8999999999999999999999985210 111244543210
Q ss_pred -----cc-------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 708 -----IP-------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 708 -----~~-------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
.. .+..++..++..+......+++|+||+|+..++++ +.+|+++||||||+|||+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 00 12345566777766677889999999998777665 899999999999999999888887
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
..+++.+++.|.++|++||+.+.+. .+++.
T Consensus 175 -~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v 205 (490)
T PRK10938 175 -AELLASLHQSGITLVLVLNRFDEIPDFVQFA 205 (490)
T ss_pred -HHHHHHHHhcCCeEEEEeCCHHHHHhhCCEE
Confidence 5555556667899999999988754 44443
No 218
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2e-17 Score=164.39 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=118.2
Q ss_pred ccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhc---------------CceeccCcCCcc
Q 002090 650 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC---------------GLMVPAESASIP 709 (968)
Q Consensus 650 ~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~---------------g~~vp~~~~~~~ 709 (968)
+++.+|.+. ..++.|+|+ |++++++||+||||||||++++|++..++. -..|+|+.+.+|
T Consensus 8 ~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlP 87 (259)
T COG4525 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLP 87 (259)
T ss_pred heEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccch
Confidence 344444432 348889888 899999999999999999999999743321 125677777777
Q ss_pred hHH------------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 YFD------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 ~~~------------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
|.+ +++..+|.++.-.+..-.+|++|+|..-+.++ +-+|.+++||||+..+|...
T Consensus 88 Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~t 167 (259)
T COG4525 88 WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALT 167 (259)
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHH
Confidence 642 34556677777777788899999999988777 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
+..+-..+++..++.|+.++++||+.+.+-+
T Consensus 168 Re~mQelLldlw~~tgk~~lliTH~ieEAlf 198 (259)
T COG4525 168 REQMQELLLDLWQETGKQVLLITHDIEEALF 198 (259)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHHHHHh
Confidence 9999888889889999999999999988653
No 219
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.71 E-value=5.7e-17 Score=175.64 Aligned_cols=140 Identities=20% Similarity=0.234 Sum_probs=100.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------------~~g~~vp~~~~ 706 (968)
+..++++++| |++++|+||||||||||+|+|+|+.... +...|+|+...
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 3568899988 8999999999999999999999986321 11234555432
Q ss_pred Ccc--hHH----------------------HHHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~----------------------~i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+ .++..++.. +........+|+|++|...+++. +.+|+++||||||
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 172 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 211 111 123334554 34456667899999997776665 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+|+|+.....+ ..+++.+.+ ++++|++||+.+.+ ..+++.
T Consensus 173 ~~LD~~~~~~l-~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i 213 (247)
T TIGR00972 173 SALDPIATGKI-EELIQELKK-KYTIVIVTHNMQQAARISDRT 213 (247)
T ss_pred ccCCHHHHHHH-HHHHHHHHh-cCeEEEEecCHHHHHHhCCEE
Confidence 99999888877 455555555 48999999999865 455543
No 220
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.71 E-value=5.1e-17 Score=173.32 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=101.1
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------h------------------hcCceeccCcC
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------G------------------ICGLMVPAESA 706 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------a------------------~~g~~vp~~~~ 706 (968)
..++++++| |++++|+||||||||||+|+|+|+... . +...++|+...
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 468999998 899999999999999999999998521 0 11235666543
Q ss_pred Ccch------------------------HHHHHhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002090 707 SIPY------------------------FDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGT 760 (968)
Q Consensus 707 ~~~~------------------------~~~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~Gl 760 (968)
..+. +..++..++..+.. ......+|+|++|...++++ +.+|+++||||||+|+
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 180 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 2110 01234445554432 45667899999997776665 8899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 761 D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
|+.....+. .+++.+++.|+|+|++||+.+++. +++
T Consensus 181 D~~~~~~l~-~~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 181 DAANRQVVV-ELIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred CHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 998888774 555556667899999999988764 444
No 221
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=5.4e-17 Score=171.94 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=96.8
Q ss_pred eEee---ceEEEEEecCCCCcchHHHHHHhHHHhh------------------------hcCceeccCcCCcc---h---
Q 002090 664 TVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP---Y--- 710 (968)
Q Consensus 664 ~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la------------------------~~g~~vp~~~~~~~---~--- 710 (968)
+++| .++++|+||||||||||+|+|+|+.... +...|+|+....++ .
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 7776 4899999999999999999999985210 11235565532211 1
Q ss_pred ----------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002090 711 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSII 773 (968)
Q Consensus 711 ----------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll 773 (968)
+..++..++..+.......++|+|++|...+++. +.+|+++||||||+|+|+.....+. .++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 174 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL-PEL 174 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 1224445566555566778899999997776655 8999999999999999998878774 445
Q ss_pred HHHHh-cCcEEEEeccChhhhh-cccc
Q 002090 774 ETLDN-IGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 774 ~~l~~-~g~~vl~~TH~~el~~-~~~~ 798 (968)
..+.+ .|.++|++||+.+... .+++
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (214)
T cd03297 175 KQIKKNLNIPVIFVTHDLSEAEYLADR 201 (214)
T ss_pred HHHHHHcCcEEEEEecCHHHHHHhcCE
Confidence 45544 4899999999998763 4443
No 222
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.2e-17 Score=185.28 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=104.0
Q ss_pred eEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------------hcCceeccCcCCcch-----
Q 002090 664 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIPY----- 710 (968)
Q Consensus 664 ~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------------~~g~~vp~~~~~~~~----- 710 (968)
+++| |++++|+||||||||||||+|+|+.... +...|+|+....++.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 6776 8999999999999999999999985210 112356665443321
Q ss_pred -------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 002090 711 -------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776 (968)
Q Consensus 711 -------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l 776 (968)
++.++..++..+.......++|+|++|...++++ +.+|+++||||||+|||+.....+...+.+..
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~ 175 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA 175 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 2235566677766777888999999997777665 89999999999999999988888855554444
Q ss_pred HhcCcEEEEeccChhhh-hccccccccccc
Q 002090 777 DNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 777 ~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
++.|.|+|++||+++.+ .++++...+..+
T Consensus 176 ~~~g~tii~vTHd~~~~~~~~d~i~~l~~G 205 (352)
T PRK11144 176 REINIPILYVSHSLDEILRLADRVVVLEQG 205 (352)
T ss_pred HhcCCeEEEEecCHHHHHHhCCEEEEEeCC
Confidence 44589999999999765 445544333333
No 223
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-16 Score=173.78 Aligned_cols=143 Identities=19% Similarity=0.209 Sum_probs=99.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--Hh-------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LL-------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--~l-------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+. .. .+...|+|+...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 4578999998 8999999999999999999999862 11 011235555432
Q ss_pred Ccc--hH----------------------HHHHhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YF----------------------DAIMLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~----------------------~~i~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ .. +.++..++..+ .+......+|+|++|...+++. +.+|+++||||||
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 211 11 12233344432 2344566899999987776655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNA 802 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~ 802 (968)
+|||+.....+. .+++.+.+ ++++|++||+.+.+ +.+++.-.+
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l 218 (250)
T PRK14245 175 SALDPISTAKVE-ELIHELKK-DYTIVIVTHNMQQAARVSDKTAFF 218 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence 999998888874 44444554 78999999999875 445544333
No 224
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=7.3e-17 Score=173.12 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=104.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCcc---h--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---Y-- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~~---~-- 710 (968)
++.++++++| |++++|+||||+|||||+|+|+|+.... +...++|++...++ .
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 3578999888 8999999999999999999999996221 11235555432221 1
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
++.++..++..+.+......+|.|+++...++++ +.+|+++|||||++|+|+.....+ .
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l-~ 170 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM-Q 170 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 1234455677666677778899999987666555 899999999999999999888887 4
Q ss_pred HHHHHHHh-cCcEEEEeccChhhh-hccccc
Q 002090 771 SIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 771 ~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~ 799 (968)
.+++.+++ .|+|+|++||+.+.+ +.+++.
T Consensus 171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i 201 (232)
T cd03300 171 LELKRLQKELGITFVFVTHDQEEALTMSDRI 201 (232)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence 55555554 489999999999875 444443
No 225
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.71 E-value=5.1e-17 Score=182.80 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=102.5
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------------hcCceeccCcC-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA- 706 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------------~~g~~vp~~~~- 706 (968)
..+++++|| |++++|+|+||||||||+++|+|+.-.. +...+||++..
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 568999999 8999999999999999999999986321 12346776641
Q ss_pred -Ccc---hH----------------------HHHHhhcCCCC---CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 707 -SIP---YF----------------------DAIMLHMKSYD---SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 707 -~~~---~~----------------------~~i~~~~~~~d---~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
..+ .. .+++..+++.+ .+......+|+||+|...|+.+ +.+|+|||+|||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111 11 12334445432 1244667899999997776655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
|+|||+.....+...+.+...+.|.++||+|||++++. ++++.
T Consensus 189 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 99999988888855444443445999999999999874 55543
No 226
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.3e-17 Score=192.60 Aligned_cols=147 Identities=22% Similarity=0.222 Sum_probs=107.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCc---c
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASI---P 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~---~ 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....+ .
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 4678999999 899999999999999999999998521 01123666653211 1
Q ss_pred h------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 Y------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 ~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. +..++..++..........++|+|++|...+++. +.+|+++||||||+|+|+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 1 1233444566555566778999999998777665 88999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 805 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~ 805 (968)
...+ ..+++.+.+.|.++|++||+.+.+. .+++...+.++
T Consensus 170 ~~~l-~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G 210 (491)
T PRK10982 170 VNHL-FTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210 (491)
T ss_pred HHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 8887 5556666777999999999998764 45544333333
No 227
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=176.77 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=97.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--h-------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--l-------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|++..
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 4579999998 89999999999999999999999631 0 011235565533
Q ss_pred Ccc--hHH----------------------HHHhhcCC----CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFD----------------------AIMLHMKS----YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~----------------------~i~~~~~~----~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+ .++..++. .+.......++|+|++|...++++ +.+|+++||||||
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 221 111 12222333 123345567899999997776655 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+|||+.....+. .+++.+.+ +.++|++||+++.+. .+++
T Consensus 211 ~gLD~~~~~~l~-~~L~~~~~-~~tvIivsH~~~~~~~~~d~ 250 (286)
T PRK14275 211 SALDPKATAKIE-DLIQELRG-SYTIMIVTHNMQQASRVSDY 250 (286)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence 999998877774 45555554 589999999998863 4443
No 228
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.71 E-value=3.9e-17 Score=178.24 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=99.9
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhc-----C--ceeccCcCC---cchH-----------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----G--LMVPAESAS---IPYF----------- 711 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~-----g--~~vp~~~~~---~~~~----------- 711 (968)
.+..++++++| |++++|+||||||||||+++|+|+...... | .++++.... ....
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 45678999998 899999999999999999999998632210 1 122221110 1111
Q ss_pred ----------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 002090 712 ----------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780 (968)
Q Consensus 712 ----------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g 780 (968)
+.++..++..+.+.....++|+|+++...++++ +.+|+++|||||++|+|+.....+.. ++..+++.|
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~~g 193 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKEQN 193 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHCC
Confidence 122334455555666778899999987665554 88999999999999999988777744 445556678
Q ss_pred cEEEEeccChhhhh-cccc
Q 002090 781 CLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 781 ~~vl~~TH~~el~~-~~~~ 798 (968)
.++|++||+.+.+. .+++
T Consensus 194 ~tiIiisH~~~~i~~~~d~ 212 (264)
T PRK13546 194 KTIFFVSHNLGQVRQFCTK 212 (264)
T ss_pred CEEEEEcCCHHHHHHHcCE
Confidence 99999999988753 4443
No 229
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.9e-17 Score=173.31 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=96.4
Q ss_pred eEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcc---hHH------
Q 002090 664 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---YFD------ 712 (968)
Q Consensus 664 ~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~---~~~------ 712 (968)
+++| |++++|+||||||||||+|+|+|+... .....|+|+....++ ..+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 5666 899999999999999999999998521 011235665432211 111
Q ss_pred ---------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 002090 713 ---------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776 (968)
Q Consensus 713 ---------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l 776 (968)
.++..++..+........+|+|++|...++++ +.+|+++|||||++|+|+.....+...+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 23344455544556667899999997776655 89999999999999999988888855555444
Q ss_pred HhcCcEEEEeccChhhhh-cccc
Q 002090 777 DNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 777 ~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
.+.|+|+|++||+.+++. .+++
T Consensus 177 ~~~~~tiii~sH~~~~~~~~~d~ 199 (232)
T PRK10771 177 QERQLTLLMVSHSLEDAARIAPR 199 (232)
T ss_pred HhcCCEEEEEECCHHHHHHhCCE
Confidence 445899999999998753 4443
No 230
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.70 E-value=9.8e-17 Score=173.84 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=94.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-hhhc----------------------CceeccCcCCcch
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGIC----------------------GLMVPAESASIPY 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-la~~----------------------g~~vp~~~~~~~~ 710 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. .... ..++|+....++.
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 4578999998 89999999999999999999999831 1111 2244444321111
Q ss_pred H-------------------------------HHHHhhcCCCC-CccCCc-cchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 711 F-------------------------------DAIMLHMKSYD-SPADGK-SSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 711 ~-------------------------------~~i~~~~~~~d-~~~~~~-s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
. +.++..++..+ ...... ..+|+|+++...++++ +.+|+++|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 01112222211 112222 2699999997776655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
|+|||+.....+ ..+++.+++.++|+|++||++++...
T Consensus 173 t~~LD~~~~~~l-~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 173 DSGLDIDALKIV-ADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred CccCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 999999887777 55555667778999999999988654
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.70 E-value=5.4e-17 Score=177.96 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=99.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----------------------------hcCceeccCc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------------ICGLMVPAES 705 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----------------------------~~g~~vp~~~ 705 (968)
++.+++++|| |++++|+||||||||||+|+|+|+.... +...++|+..
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 4678999998 8999999999999999999999985321 1123455542
Q ss_pred CC---cchHH-------------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHh-C---------CC
Q 002090 706 AS---IPYFD-------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-T---------TS 747 (968)
Q Consensus 706 ~~---~~~~~-------------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a---------~~ 747 (968)
.. ....+ .++..++..+......+++|+|++|...+++. + .+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 21 11112 22233444444455667899999998877766 4 48
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccc
Q 002090 748 RSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~ 797 (968)
|+++||||||+|||+.....+...+. .+.+ .|.++|++||+.+... +++
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVR-RLARDWNLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEECCHHHHHHhCC
Confidence 99999999999999988888855444 4544 4899999999988763 444
No 232
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.70 E-value=3.9e-17 Score=189.27 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=102.3
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc--------eeccCc---CCcch-------------
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL--------MVPAES---ASIPY------------- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~--------~vp~~~---~~~~~------------- 710 (968)
+.++++++| |++++|+||||||||||||+|+|+.... .|. +++... ..+..
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 468999998 8999999999999999999999986321 111 010000 00000
Q ss_pred --------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 002090 711 --------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 781 (968)
Q Consensus 711 --------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~ 781 (968)
.+.++..+++.+........+|+||+|...++++ +.+|+++||||||+|||+.....+. .+++.+++.|.
T Consensus 116 ~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~ 194 (549)
T PRK13545 116 TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGK 194 (549)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCC
Confidence 1234455666666677788999999997766654 8999999999999999998877774 44555666789
Q ss_pred EEEEeccChhhhh-cccccccc
Q 002090 782 LGIVSTHLHGIFS-LPLKIKNA 802 (968)
Q Consensus 782 ~vl~~TH~~el~~-~~~~~~~~ 802 (968)
++|++||+++.+. ++++.-.+
T Consensus 195 TIIIVSHdl~~i~~l~DrIivL 216 (549)
T PRK13545 195 TIFFISHSLSQVKSFCTKALWL 216 (549)
T ss_pred EEEEEECCHHHHHHhCCEEEEE
Confidence 9999999988764 45544333
No 233
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.6e-17 Score=192.50 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=104.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcC---Cc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA---SI 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~---~~ 708 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 4568999998 899999999999999999999998531 011235665521 10
Q ss_pred ---ch--------------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 709 ---PY--------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 709 ---~~--------------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.. ++.++..++.. +.......++|+||+|...+++. +.+|+++||||||
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 11 12344555664 34566778999999998877765 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+|||+.....+ ..+++.+++.|.|||++||+++.+. ++++
T Consensus 434 ~~LD~~~~~~l-~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 434 RGIDVGAKYEI-YKLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred CCcCHhHHHHH-HHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 99999887777 6666667777999999999998764 4444
No 234
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=173.64 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=99.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------h------------------hcCceeccCcCCc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G------------------ICGLMVPAESASI 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a------------------~~g~~vp~~~~~~ 708 (968)
++.++++++| |++++|+||||||||||+++|+|+... + ....|+|+....+
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 4578999998 899999999999999999999998531 0 1112556553221
Q ss_pred ---chHHH-----------------------HHhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 709 ---PYFDA-----------------------IMLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 709 ---~~~~~-----------------------i~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
...++ ++..++..+ .+.....++|+|++|...++++ +.+|+++||||||
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11222 222234321 2345567899999997776655 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+|+|+.....+...+ +.+.+ +.++|++||+++.. +.+++.
T Consensus 175 ~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 175 ANLDPENTAKIESLF-LELKK-DMTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred ccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhcCEE
Confidence 999998888874444 45554 79999999999875 445543
No 235
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=174.74 Aligned_cols=139 Identities=17% Similarity=0.271 Sum_probs=98.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----hhc-----------------------CceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC-----------------------GLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----a~~-----------------------g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... ... ..|+|+...
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 4679999999 899999999999999999999998631 011 135555432
Q ss_pred Ccc--hHH-----------------------HHHhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 707 SIP--YFD-----------------------AIMLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 707 ~~~--~~~-----------------------~i~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
.++ ..+ .++..+++.+ .+.....++|+|++|...+++. +.+|+++|||||
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 211 111 1223334422 2334567899999997776655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
|+|+|+.....+ ..+++.+.+ +.|+|++||+.+.+. .+++
T Consensus 191 t~~LD~~~~~~l-~~~L~~l~~-~~tiiivtH~~~~~~~~~d~ 231 (267)
T PRK14235 191 CSALDPIATAKV-EELIDELRQ-NYTIVIVTHSMQQAARVSQR 231 (267)
T ss_pred CcCCCHHHHHHH-HHHHHHHhc-CCeEEEEEcCHHHHHhhCCE
Confidence 999999887777 555555655 689999999998763 3443
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.70 E-value=8.2e-17 Score=192.96 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=103.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--hh------------------------------------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LG------------------------------------ 695 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--la------------------------------------ 695 (968)
++.++++++| |++++|+||||||||||||+|+|+.. ..
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 4679999998 89999999999999999999999841 10
Q ss_pred -----------------hcCceeccC-cCCcc---h---------------------HHHHHhhcCCCCCccCCccchHH
Q 002090 696 -----------------ICGLMVPAE-SASIP---Y---------------------FDAIMLHMKSYDSPADGKSSFQV 733 (968)
Q Consensus 696 -----------------~~g~~vp~~-~~~~~---~---------------------~~~i~~~~~~~d~~~~~~s~fs~ 733 (968)
+...++|+. ...++ . +..++..+++.+......+++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 001345553 11111 1 11234455665555667789999
Q ss_pred HHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 734 EMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 734 ~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
||+|+..++++ +.+|+++||||||+|||+.....+...+.+..++.|.+||++||+.+.+. ++++.
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 99998777666 89999999999999999988888855444443556899999999998764 44443
No 237
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=174.68 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=97.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----h-----------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G-----------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----a-----------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... . +...|+|+...
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 4579999998 899999999999999999999998530 0 11225555432
Q ss_pred Ccc--hHH----------------------HHHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~----------------------~i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+ .++..++.. +.......++|+|++|...+++. +.+|+++||||||
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 184 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 184 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 211 111 122233331 12345567899999997776665 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+|+|+.....+ ..+++.+++ +.|+|++||+.+.+ .++++.
T Consensus 185 ~~LD~~~~~~l-~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i 225 (260)
T PRK10744 185 SALDPISTGRI-EELITELKQ-DYTVVIVTHNMQQAARCSDYT 225 (260)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEE
Confidence 99999887777 445555554 68999999999875 344443
No 238
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.2e-17 Score=191.59 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=104.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCc---c
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASI---P 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~---~ 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....+ .
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 4579999999 899999999999999999999998521 11123566643211 1
Q ss_pred h------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 Y------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 ~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. +..++..++..+......+++|+|++|...+++. +.+|+++||||||+|||+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 1 1223445566555566778999999997776655 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
...+ ..++..+.+.|.++|++||+.+.+. ++++.
T Consensus 176 ~~~l-~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i 210 (501)
T PRK11288 176 IEQL-FRVIRELRAEGRVILYVSHRMEEIFALCDAI 210 (501)
T ss_pred HHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 8887 5555556667999999999998764 44443
No 239
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.70 E-value=5.8e-17 Score=175.93 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=100.5
Q ss_pred ceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhhhcC----------------------------------cee
Q 002090 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICG----------------------------------LMV 701 (968)
Q Consensus 659 ~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la~~g----------------------------------~~v 701 (968)
+.+++++++ |++++|+||||||||||||+|+|+.... .| .++
T Consensus 14 ~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 14 SFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred chhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 357777777 8999999999999999999999996311 11 112
Q ss_pred ccCcCCcc------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 702 PAESASIP------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 702 p~~~~~~~------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
|+.....+ ....++..++..+.......++|++++|...+.+. +.+|+++||||||+|+|+
T Consensus 93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 22111111 12235556677666667778899999997776665 889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
.....+ ..+++.+.+.++++|++||+++.+. +++
T Consensus 173 ~~~~~l-~~~l~~l~~~~~tIIiiSHd~~~~~~~ad 207 (255)
T cd03236 173 KQRLNA-ARLIRELAEDDNYVLVVEHDLAVLDYLSD 207 (255)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 887777 4555566666899999999998765 344
No 240
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.8e-17 Score=174.55 Aligned_cols=139 Identities=20% Similarity=0.202 Sum_probs=97.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|++..
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 4578999998 8999999999999999999999986421 01224555432
Q ss_pred Cc--chHHHH----------------------HhhcCC----CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SI--PYFDAI----------------------MLHMKS----YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~--~~~~~i----------------------~~~~~~----~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.+ ...+++ +..++. .+......+.+|+|++|...+++. +.+|+++||||||
T Consensus 99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 178 (254)
T PRK14273 99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 (254)
T ss_pred cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 21 111211 112222 122344567899999997776665 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~ 798 (968)
+|+|+.....+.. ++..+++ +.|+|++||+.+.+ +.+++
T Consensus 179 ~~LD~~~~~~l~~-~l~~~~~-~~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 179 SALDPISTGKIEE-LIINLKE-SYTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred cccCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 9999988888754 5555554 78999999999875 34443
No 241
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.5e-16 Score=172.31 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=99.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH---h--------------------hhcCceeccCcCCcc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---L--------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~---l--------------------a~~g~~vp~~~~~~~- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|+....++
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 4578999998 89999999999999999999999741 0 111235666532211
Q ss_pred -hH-----------------------HHHHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002090 710 -YF-----------------------DAIMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGT 760 (968)
Q Consensus 710 -~~-----------------------~~i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~Gl 760 (968)
.. ..++..++.. +........+|+|++|...++++ +.+|+++||||||+|+
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 11 1233444543 22344567899999997776665 8999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 761 D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
|+.....+.. ++..+.+ +.|+|++||+.+.+. .+++.
T Consensus 174 D~~~~~~l~~-~l~~~~~-~~tiii~tH~~~~~~~~~d~i 211 (246)
T PRK14269 174 DPISSGVIEE-LLKELSH-NLSMIMVTHNMQQGKRVADYT 211 (246)
T ss_pred CHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHHhhCcEE
Confidence 9988777744 4444554 899999999998653 44433
No 242
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.70 E-value=5.2e-17 Score=178.04 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=99.0
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-------------------hhhcCceeccCcCCcc--hH
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAESASIP--YF 711 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-------------------la~~g~~vp~~~~~~~--~~ 711 (968)
++..++++++| |++++|+||||||||||+++|+|+.. +.+...++|++...++ ..
T Consensus 15 ~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~ 94 (275)
T cd03289 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFR 94 (275)
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHH
Confidence 34578999999 89999999999999999999999951 1122356777654332 11
Q ss_pred H--------------HHHhhcCCCCCccC-----------CccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 712 D--------------AIMLHMKSYDSPAD-----------GKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 712 ~--------------~i~~~~~~~d~~~~-----------~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
+ .....+++.+.+.. +.+.+|+||+|...++++ +.+|+++||||||+|+|+...
T Consensus 95 ~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~ 174 (275)
T cd03289 95 KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174 (275)
T ss_pred HHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 1 12223343322222 223499999998777666 899999999999999999887
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
..+...+. .+. .++|+|++||+++....++
T Consensus 175 ~~l~~~l~-~~~-~~~tii~isH~~~~i~~~d 204 (275)
T cd03289 175 QVIRKTLK-QAF-ADCTVILSEHRIEAMLECQ 204 (275)
T ss_pred HHHHHHHH-Hhc-CCCEEEEEECCHHHHHhCC
Confidence 77744444 443 4899999999998766443
No 243
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.70 E-value=1.1e-16 Score=173.79 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=96.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH-Hhhhc----------------------CceeccCcCCcc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-LLGIC----------------------GLMVPAESASIP- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~-~la~~----------------------g~~vp~~~~~~~- 709 (968)
++.++++++| |++++|+||||||||||+|+|+|+. ..... ..++|+....++
T Consensus 19 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence 4579999998 8999999999999999999999962 00011 123444321111
Q ss_pred --h----------------------------HHHHHhhcCCCC-CccCCcc-chHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 710 --Y----------------------------FDAIMLHMKSYD-SPADGKS-SFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 710 --~----------------------------~~~i~~~~~~~d-~~~~~~s-~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
. +..++..++..+ ....... .+|+|+++...++++ +.+|+++|||||
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 178 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 012233444432 2334444 599999987776655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
|+|||+.....+. .++..+.+.|.|+|++||++++...
T Consensus 179 t~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~ 216 (252)
T CHL00131 179 DSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDY 216 (252)
T ss_pred cccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHh
Confidence 9999998888884 5555555668999999999988653
No 244
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.69 E-value=7.8e-17 Score=159.82 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=82.3
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 734 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~ 734 (968)
..++++++| |++++|+||||||||||+++|+|+.... .|...-.....+.++ ..+|.+
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~-----------------~~lS~G 74 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYF-----------------EQLSGG 74 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEE-----------------ccCCHH
Confidence 468899888 8999999999999999999998875322 221110000011111 118889
Q ss_pred HHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 735 MSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 735 ~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+++...++++ +.+|+++|+|||++|+|+.....+.. +++.+ +.++|++||+.+.+.
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~---~~til~~th~~~~~~ 131 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALKEY---PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHc---CCEEEEEECCHHHHH
Confidence 9887766555 89999999999999999988776643 34433 579999999988764
No 245
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=173.50 Aligned_cols=145 Identities=18% Similarity=0.241 Sum_probs=101.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--h-------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--l-------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|+...
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 4578999998 89999999999999999999999852 0 011235666532
Q ss_pred Ccc--hHH-----------------------HHHhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 707 SIP--YFD-----------------------AIMLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 707 ~~~--~~~-----------------------~i~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
.++ ..+ .++..+++.+ .+......+|+|++|...+++. +.+|+++|||||
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 176 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 221 111 1233344432 2234556799999987776655 889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccccccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 804 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~ 804 (968)
|+|||+.....+ ..++..+.+ +.|+|++||+.+++. .+++...+.+
T Consensus 177 t~~LD~~~~~~l-~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~ 223 (251)
T PRK14244 177 CSALDPVATNVI-ENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQS 223 (251)
T ss_pred CccCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEEC
Confidence 999999887777 455555554 899999999998754 4554433333
No 246
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.69 E-value=9.6e-17 Score=191.48 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=103.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----h-------------------hcCceeccCcCCc--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G-------------------ICGLMVPAESASI-- 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----a-------------------~~g~~vp~~~~~~-- 708 (968)
++.++++++| |++++|+||||||||||+|+|+|+... + +...|+|+....+
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 4678999998 899999999999999999999998632 0 1123566643211
Q ss_pred -ch-------------------------HHHHHhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002090 709 -PY-------------------------FDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGT 760 (968)
Q Consensus 709 -~~-------------------------~~~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~Gl 760 (968)
.. +..++..++..+.. .....++|+||+|...+++. +.+|+++||||||+||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 11 11233445554433 34567899999998777765 8899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccccc
Q 002090 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIK 800 (968)
Q Consensus 761 D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~ 800 (968)
|+.....+ ..+++.+++.|.++|++||+.+.+. ++++..
T Consensus 173 D~~~~~~l-~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~ 212 (500)
T TIGR02633 173 TEKETEIL-LDIIRDLKAHGVACVYISHKLNEVKAVCDTIC 212 (500)
T ss_pred CHHHHHHH-HHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEE
Confidence 99888887 5555666777999999999988764 455433
No 247
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.1e-16 Score=172.06 Aligned_cols=138 Identities=19% Similarity=0.177 Sum_probs=101.2
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCcc---h-----
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---Y----- 710 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~~---~----- 710 (968)
++++++| |++++|+||||+|||||+++++|+.... +...++|+....++ .
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 7999998 8999999999999999999999985211 12235555432221 0
Q ss_pred ----------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002090 711 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSII 773 (968)
Q Consensus 711 ----------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll 773 (968)
+..++..++..+.+.....++|+|+++...++++ +.+|+++||||||+|+|+.....+ +.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL-REEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH-HHHH
Confidence 1123445566655666777899999987776655 899999999999999999887777 5555
Q ss_pred HHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 774 ETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 774 ~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+.+.. .|+|+|++||+.+.+. .+++.
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~~~~d~i 200 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAWALADKV 200 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 55554 4899999999998753 44433
No 248
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=174.49 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=100.4
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-h--------------------------hhcC
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-L--------------------------GICG 698 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-l--------------------------a~~g 698 (968)
++.+.+. ++.++++++| |++++|+||||||||||+|+|+|+.. . .+..
T Consensus 26 ~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 104 (268)
T PRK14248 26 DLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREI 104 (268)
T ss_pred EEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccE
Confidence 3334443 4679999998 89999999999999999999999642 0 0112
Q ss_pred ceeccCcCCcc--hHHHH----------------------HhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCc
Q 002090 699 LMVPAESASIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRS 749 (968)
Q Consensus 699 ~~vp~~~~~~~--~~~~i----------------------~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~ 749 (968)
.|+|+....++ ..+++ +..++.. +........+|+|++|...+++. +.+|+
T Consensus 105 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~ 184 (268)
T PRK14248 105 GMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPA 184 (268)
T ss_pred EEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCC
Confidence 35555432211 11111 1122221 11235567899999997776655 89999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 750 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 750 LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
++||||||+|+|+.....+ ..++..+++ +.|+|++||+.+.+ +.+++.
T Consensus 185 lllLDEPt~~LD~~~~~~l-~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 185 VLLLDEPASALDPISNAKI-EELITELKE-EYSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred EEEEcCCCcccCHHHHHHH-HHHHHHHhc-CCEEEEEEeCHHHHHHhCCEE
Confidence 9999999999999888887 555555554 68999999998865 344443
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.3e-16 Score=190.76 Aligned_cols=137 Identities=9% Similarity=0.063 Sum_probs=103.3
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCc---CCc---
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAES---ASI--- 708 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~---~~~--- 708 (968)
.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+.. ..+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 38999998 899999999999999999999998511 01124667641 111
Q ss_pred ch------------------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 709 PY------------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 709 ~~------------------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
.. ++.++..++.. +.......++|+|++|...+++. +.+|+++|||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 00 12345556775 55677788999999998777666 889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
|+|||+.....+ ..+++.+++.|.++|++|||++++. +++
T Consensus 437 t~~LD~~~~~~l-~~~l~~l~~~g~tvi~vsHd~~~~~~~~d 477 (510)
T PRK09700 437 TRGIDVGAKAEI-YKVMRQLADDGKVILMVSSELPEIITVCD 477 (510)
T ss_pred CCCcCHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 999999887777 5566666667999999999988764 444
No 250
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.69 E-value=1.1e-16 Score=190.97 Aligned_cols=141 Identities=18% Similarity=0.204 Sum_probs=104.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----------------------hcCceeccCcC---Cc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------ICGLMVPAESA---SI 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----------------------~~g~~vp~~~~---~~ 708 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|++.. .+
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3568999998 8999999999999999999999985310 11235555421 11
Q ss_pred c-----------------------------hHHHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 709 P-----------------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 709 ~-----------------------------~~~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
+ .+..++..++..+ .......++|+|++|...+++. +.+|+++||||||
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 0 0123455566653 4567778999999998877766 7899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|||+.....+ ..+++.+++.|.++|++|||++++. ++++.
T Consensus 432 ~~LD~~~~~~l-~~~l~~l~~~g~tviivsHd~~~~~~~~d~v 473 (500)
T TIGR02633 432 RGVDVGAKYEI-YKLINQLAQEGVAIIVVSSELAEVLGLSDRV 473 (500)
T ss_pred CCcCHhHHHHH-HHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 99999877777 5666667777999999999998764 44443
No 251
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.6e-16 Score=173.48 Aligned_cols=140 Identities=18% Similarity=0.231 Sum_probs=98.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------h--------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a--------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... + +...|+|+...
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 4579999998 899999999999999999999998531 1 01124555432
Q ss_pred Ccc--hHH----------------------HHHhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFD----------------------AIMLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~----------------------~i~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+ .++..++..+ .+.....++|+|++|...+++. +.+|+++||||||
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 183 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111 111 1222333321 2345567899999997776665 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|+|+.....+ ..+++.+.+ +.++|++||+.+.+. .+++.
T Consensus 184 ~~LD~~~~~~l-~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i 224 (259)
T PRK14274 184 SALDPVSTRKI-EELILKLKE-KYTIVIVTHNMQQAARVSDQT 224 (259)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCEEEEEEcCHHHHHHhCCEE
Confidence 99999887777 455555655 789999999998753 44443
No 252
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=3.4e-17 Score=170.91 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=112.0
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----hcCceeccCcCC-----c--------------ch--
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICGLMVPAESAS-----I--------------PY-- 710 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----~~g~~vp~~~~~-----~--------------~~-- 710 (968)
.+..|+|| |++++++|||||||||+||++.|++... ..++++|..... + +.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 36788888 8999999999999999999999997543 223445543110 0 10
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
.+.+..-++....+......+|.|++..+.+++. ..+|++++|||||-|||.....+|..
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 0122233455556667778889999888777665 89999999999999999999999988
Q ss_pred HHHHHHHhcCcEEEEeccChh-hhhccccccccccceeEE
Q 002090 771 SIIETLDNIGCLGIVSTHLHG-IFSLPLKIKNAAYKAMGT 809 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~e-l~~~~~~~~~~~~~~~~~ 809 (968)
.+-++-.++++||+.+||+++ +++++++.-.+..+.+.+
T Consensus 198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 888888889999999999884 666776655555555443
No 253
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.4e-16 Score=173.20 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=99.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--h-------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--l-------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...++|++..
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 4579999998 89999999999999999999999852 1 011235565432
Q ss_pred Ccc---hHH----------------------HHHhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 707 SIP---YFD----------------------AIMLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 707 ~~~---~~~----------------------~i~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
.++ ..+ .++..++... .......++|+|++|...+++. +.+|+++|||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 221 111 1222334321 2234567799999997776655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIK 800 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~ 800 (968)
|+|+|+.....+ ..+++.+.+ +.++|++||+.+.+ +.+++..
T Consensus 176 ~~gLD~~~~~~l-~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T PRK14256 176 ASALDPISTLKI-EELIEELKE-KYTIIIVTHNMQQAARVSDYTA 218 (252)
T ss_pred cccCCHHHHHHH-HHHHHHHHh-CCcEEEEECCHHHHHhhCCEEE
Confidence 999999887777 455555655 58999999999876 4555443
No 254
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.69 E-value=8.7e-17 Score=192.05 Aligned_cols=137 Identities=12% Similarity=0.176 Sum_probs=102.1
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcC---Cc---c
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA---SI---P 709 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~---~~---~ 709 (968)
++++++| |++++|+||||||||||+|+|+|+... .....|+|+... .+ .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 5788888 899999999999999999999998511 011346666420 00 0
Q ss_pred h------------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 710 Y------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 710 ~------------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
. ++.++..++.. +......+.+|+||+|...+++. +.+|+++||||||+|||+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 0 12344556665 55667778999999998777655 8899999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
....+ ..+++.+++.|.++|++|||++++. ++++
T Consensus 438 ~~~~l-~~~l~~l~~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 438 ARNDI-YQLIRSIAAQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred HHHHH-HHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 88887 5556666667999999999998764 3443
No 255
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=189.79 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=102.7
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------h-------------hcCceeccCcC---Cc---
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G-------------ICGLMVPAESA---SI--- 708 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------a-------------~~g~~vp~~~~---~~--- 708 (968)
.++++++| |++++|+||||||||||+|+|+|+... . +...|+|+... .+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 47888888 899999999999999999999998510 0 11225555421 10
Q ss_pred ch---------------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 709 PY---------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 709 ~~---------------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
.. ...++..++.. +.......++|+||+|...+++. +.+|+|+||||||+|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 00 12344556663 45677788999999998777666 789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+|+.....+ ..+++.+.+.|.++|++|||++.+. ++++
T Consensus 427 LD~~~~~~l-~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 427 IDVGAKHEI-YNVIYELAAQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred CCHhHHHHH-HHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence 999888888 5566667777999999999998764 4443
No 256
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.8e-16 Score=172.33 Aligned_cols=140 Identities=22% Similarity=0.242 Sum_probs=97.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+...
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 4579999998 8999999999999999999999985321 01234555432
Q ss_pred Ccc---hHHH-----------------------HHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 707 SIP---YFDA-----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 707 ~~~---~~~~-----------------------i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
.++ ..++ ++..++.. +........+|+|++|...++++ +.+|+++||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 221 1111 12223321 12344566789999997776665 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
||+|||+.....+...+. .+.+ +.++|++||+.+.+ .++++.
T Consensus 176 P~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~i 218 (253)
T PRK14267 176 PTANIDPVGTAKIEELLF-ELKK-EYTIVLVTHSPAQAARVSDYV 218 (253)
T ss_pred CCccCCHHHHHHHHHHHH-HHhh-CCEEEEEECCHHHHHhhCCEE
Confidence 999999988777744444 4554 68999999999875 345543
No 257
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=172.28 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=97.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----hc-----------------------CceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----IC-----------------------GLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----~~-----------------------g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... .. ..++|+...
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 4578999998 8999999999999999999999986310 01 224444322
Q ss_pred Ccc---hHHH----------------------HHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 707 SIP---YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 707 ~~~---~~~~----------------------i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
.++ ..++ ++..++.. +.......++|+|++|...++++ +.+|+++|||||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 111 1111 22223331 23345567899999997776665 789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~ 798 (968)
|+|+|+.....+ ..+++.+++ +.++|++||+.+.+ +.+++
T Consensus 176 t~~LD~~~~~~l-~~~l~~~~~-~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 176 CSALDPISTLAI-EDLINELKQ-DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred CccCCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 999999888877 555555554 68999999999875 34443
No 258
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.69 E-value=1.2e-16 Score=170.33 Aligned_cols=130 Identities=20% Similarity=0.177 Sum_probs=94.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh---------------hcCceeccCcCC-----cch-----------------
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESAS-----IPY----------------- 710 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la---------------~~g~~vp~~~~~-----~~~----------------- 710 (968)
|++++|+||||||||||+|+|+|+.... +...|+|+.... ...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 85 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRR 85 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccC
Confidence 7899999999999999999999985211 123466654321 001
Q ss_pred --------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 002090 711 --------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 781 (968)
Q Consensus 711 --------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~ 781 (968)
+..++..++..+........+|+|++|...+++. +.+|+++|+||||+|+|+.....+... ++.++++|.
T Consensus 86 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~-l~~~~~~~~ 164 (223)
T TIGR03771 86 PCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL-FIELAGAGT 164 (223)
T ss_pred CcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCC
Confidence 1123444566555566677899999997776655 899999999999999999888888555 455566699
Q ss_pred EEEEeccChhhh-hcccc
Q 002090 782 LGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 782 ~vl~~TH~~el~-~~~~~ 798 (968)
|+|++||+++.+ ..+++
T Consensus 165 tvii~sH~~~~~~~~~d~ 182 (223)
T TIGR03771 165 AILMTTHDLAQAMATCDR 182 (223)
T ss_pred EEEEEeCCHHHHHHhCCE
Confidence 999999999865 34443
No 259
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.69 E-value=1.8e-16 Score=167.08 Aligned_cols=133 Identities=13% Similarity=0.123 Sum_probs=95.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--hHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFD 712 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~--~~~ 712 (968)
..++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ ..+
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ 100 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHH
Confidence 468999998 899999999999999999999998511 122346666543221 111
Q ss_pred HH-----------HhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 002090 713 AI-----------MLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780 (968)
Q Consensus 713 ~i-----------~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g 780 (968)
++ ...+. +......+|++++|...+++. +.+|+++|||||++|+|+.....+ ..+++.+. .|
T Consensus 101 ~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~-~~ 174 (207)
T cd03369 101 NLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEF-TN 174 (207)
T ss_pred HhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH-HHHHHHhc-CC
Confidence 11 11111 234567899999887666555 899999999999999999887777 44444454 48
Q ss_pred cEEEEeccChhhhhccc
Q 002090 781 CLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 781 ~~vl~~TH~~el~~~~~ 797 (968)
.++|++||+.+++..++
T Consensus 175 ~tiii~th~~~~~~~~d 191 (207)
T cd03369 175 STILTIAHRLRTIIDYD 191 (207)
T ss_pred CEEEEEeCCHHHHhhCC
Confidence 99999999998865443
No 260
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=3.1e-16 Score=164.65 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=92.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--hhcC--------------------ceeccCcCCc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GICG--------------------LMVPAESASI--- 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--a~~g--------------------~~vp~~~~~~--- 708 (968)
++.++++++| |++++|+||||||||||+++|+|+... ...| .++|+....+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 5679999998 899999999999999999999998641 1111 2344433222
Q ss_pred chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEe
Q 002090 709 PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVS 786 (968)
Q Consensus 709 ~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~ 786 (968)
...+.+...... ........+|+|++|...+.++ +.+|+++|||||++|+|+.....+. .+++.+.+ .+.++|++
T Consensus 99 tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 99 TVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVS 175 (202)
T ss_pred cHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 122322211111 1344567889999987666555 8999999999999999998888874 45555554 36666655
Q ss_pred -ccChh-hhhccccc
Q 002090 787 -THLHG-IFSLPLKI 799 (968)
Q Consensus 787 -TH~~e-l~~~~~~~ 799 (968)
+|+.+ +.+.+++.
T Consensus 176 ~~h~~~~~~~~~d~i 190 (202)
T cd03233 176 LYQASDEIYDLFDKV 190 (202)
T ss_pred EcCCHHHHHHhCCeE
Confidence 55544 44555543
No 261
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.2e-16 Score=171.53 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=97.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--h--hhc-----------------------CceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L--GIC-----------------------GLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--l--a~~-----------------------g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. . ... ..++|++..
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 4578999998 89999999999999999999999863 0 001 124454432
Q ss_pred Cc--chHH----------------------HHHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SI--PYFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~--~~~~----------------------~i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.+ ...+ .++..++.. +.......++|+|++|...++++ +.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 11 1111 122223332 22345567899999987766655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+|+|+.....+ ..+++.+.+ +.|+|++||+.+.+ +.+++.
T Consensus 176 ~~LD~~~~~~l-~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i 216 (251)
T PRK14251 176 SALDPISSSEI-EETLMELKH-QYTFIMVTHNLQQAGRISDQT 216 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHHc-CCeEEEEECCHHHHHhhcCEE
Confidence 99999887777 444445544 68999999999875 344443
No 262
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.1e-16 Score=170.15 Aligned_cols=140 Identities=20% Similarity=0.240 Sum_probs=97.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+...
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 4578999998 899999999999999999999987521 011234555432
Q ss_pred Cc--chHHHH----------------------HhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SI--PYFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~--~~~~~i----------------------~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.+ ...+.+ +..++..+ ........+|+|++|...++++ +.+|+++||||||
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 21 111111 11223221 1334556889999987776655 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+|+|+.....+ ..++..+.+ +.|+|++||+.+.+ ..+++.
T Consensus 175 ~~LD~~~~~~l-~~~l~~~~~-~~tili~sH~~~~~~~~~d~i 215 (250)
T PRK14262 175 SALDPIATQRI-EKLLEELSE-NYTIVIVTHNIGQAIRIADYI 215 (250)
T ss_pred cccCHHHHHHH-HHHHHHHhc-CcEEEEEeCCHHHHHHhCCEE
Confidence 99999888877 455545554 68999999999854 445443
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.68 E-value=7.5e-17 Score=211.45 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=113.6
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcch-----
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY----- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~~----- 710 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+.....+.
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 679999999 899999999999999999999998521 1123467776433211
Q ss_pred -------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~-~a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
++.++..+++.+.......++|+|++|...++. .+.+|+++||||||+|+||..+..+ +
T Consensus 2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l-~ 2110 (2272)
T TIGR01257 2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML-W 2110 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-H
Confidence 123445566666666777899999999766554 4899999999999999999888887 6
Q ss_pred HHHHHHHhcCcEEEEeccChhhhh-ccccccccccceeEEE
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 810 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~~~~ 810 (968)
.+++.++++|++||++||+++.++ ++++...+.++.+...
T Consensus 2111 ~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2111 NTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 666667667999999999998875 5665555555555443
No 264
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.3e-16 Score=172.37 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=108.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------------hhcCceeccC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------------GICGLMVPAE 704 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------------a~~g~~vp~~ 704 (968)
...+++|+|| |++++|+|.+||||||+.++|.|++.- ++..+++||+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3578999999 899999999999999999999998620 1122356665
Q ss_pred cCC-c-ch--------------------------HHHHHhhcCCCC---CccCCccchHHHHHHHHHH-HHhCCCCcEEE
Q 002090 705 SAS-I-PY--------------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRSI-VTATTSRSLVL 752 (968)
Q Consensus 705 ~~~-~-~~--------------------------~~~i~~~~~~~d---~~~~~~s~fs~~~~~~~~i-l~~a~~~~LlL 752 (968)
... + |. .-.++..+++.+ .+......||+||+|+..| ++.+.+|+|||
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 321 1 10 112444555554 2356677899999997665 45599999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccceeEEEeeCCc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDGQ 815 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~~~~~~~~~ 815 (968)
.||||++||...+..|...+.+.-++.|+++|++|||+.++. +++ ++..+.-+...+.|.
T Consensus 177 ADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD---ri~VMYaG~iVE~g~ 237 (316)
T COG0444 177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD---RVAVMYAGRIVEEGP 237 (316)
T ss_pred eCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc---eEEEEECcEEEEeCC
Confidence 999999999999999855444444458999999999999754 444 444444444343343
No 265
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.9e-16 Score=170.63 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=97.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--h-------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--l-------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+++|+|+.. . .+...++|+...
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 4578999998 89999999999999999999999731 1 011235565433
Q ss_pred Cc--chHHHH----------------------HhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SI--PYFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~--~~~~~i----------------------~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.+ ...+++ +..++.. +........+|+|++|...++++ +.+|+++||||||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22 122221 1112221 12234557799999987776655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKN 801 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~ 801 (968)
+|||+.....+. .+++.+.+ +.|+|++||+++.+ ..+++.-.
T Consensus 177 ~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14239 177 SALDPISAGKIE-ETLLGLKD-DYTMLLVTRSMQQASRISDRTGF 219 (252)
T ss_pred cccCHHHHHHHH-HHHHHHhh-CCeEEEEECCHHHHHHhCCEEEE
Confidence 999998888874 45555554 68999999998764 45554433
No 266
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.8e-16 Score=170.48 Aligned_cols=140 Identities=19% Similarity=0.232 Sum_probs=97.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 3578999998 899999999999999999999996421 011235565532
Q ss_pred Ccc--hHHHH----------------------HhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~i----------------------~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+++ +..++.. +.......++|+|++|...++++ +.+|+++||||||
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 221 11211 1122221 11234557899999997776665 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
+|+|+.....+. .+++.+.+ +.|+|++||+.+.+ +.+++.
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~v 215 (250)
T PRK14240 175 SALDPISTLKIE-ELIQELKK-DYTIVIVTHNMQQASRISDKT 215 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCeEEEEEeCHHHHHhhCCEE
Confidence 999998888874 45555554 78999999999865 444433
No 267
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2e-16 Score=171.79 Aligned_cols=140 Identities=18% Similarity=0.214 Sum_probs=97.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+...
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 4578999998 899999999999999999999997421 011235555432
Q ss_pred Ccc--hHHH----------------------HHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~----------------------i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..++ ++..++.. +........+|+|++|...+++. +.+|+++||||||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 211 1111 12222321 12345567899999987776655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|+|+.....+. .+++.+.+ +.++|++||+.+.+. .+++.
T Consensus 176 ~~LD~~~~~~l~-~~L~~~~~-~~tiiivsH~~~~~~~~~d~v 216 (251)
T PRK14270 176 SALDPISTLKIE-DLMVELKK-EYTIVIVTHNMQQASRVSDYT 216 (251)
T ss_pred ccCCHHHHHHHH-HHHHHHHh-CCeEEEEEcCHHHHHHhcCEE
Confidence 999998888884 45555555 589999999998753 44443
No 268
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.3e-16 Score=172.96 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=96.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----h-----------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G-----------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----a-----------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... . +...|+|+...
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 4679999999 899999999999999999999998421 0 11235565532
Q ss_pred Ccc--hHHH--------------------HHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 707 SIP--YFDA--------------------IMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 707 ~~~--~~~~--------------------i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
.++ ..+. ++..++.. +........+|+|++|...++++ +.+|+++||||||+|
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 221 1111 12222221 12344557799999997776655 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
||+.....+ ..+++.+++ +.++|++||+.+.+. +++
T Consensus 185 LD~~~~~~l-~~~l~~~~~-~~tiiivtH~~~~~~~~~d 221 (269)
T PRK14259 185 LDPISTLKI-EETMHELKK-NFTIVIVTHNMQQAVRVSD 221 (269)
T ss_pred CCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence 999888887 445555554 689999999988653 443
No 269
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.9e-16 Score=159.38 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=87.1
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc-eeccCcCCcchHHHHHhhcCCCCCccCCccchHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 733 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~-~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~ 733 (968)
+.++++++| |++++|+||||+|||||+++|+|+.... .|. ++................++. ...+|.
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~-------~~qlS~ 83 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLPLEELRRRIGY-------VPQLSG 83 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccCCHHHHHhceEE-------EeeCCH
Confidence 468888888 7999999999999999999998875322 221 111110000000111111111 011888
Q ss_pred HHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 734 EMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 734 ~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
|+++...+..+ +.+|+++|||||++|+|+.....+...+. .+.+.+.+++++||+++....
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~-~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR-ELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH-HHHHCCCEEEEEeCCHHHHHH
Confidence 88887766555 88999999999999999988887754444 455557899999999988764
No 270
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.68 E-value=1.8e-16 Score=189.14 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=100.9
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcC---Cc---
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA---SI--- 708 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~---~~--- 708 (968)
.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .+
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 36888888 899999999999999999999998511 012346676531 10
Q ss_pred ch---------------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 709 PY---------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 709 ~~---------------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
.. ++.++..++.. +.......++|+||+|...+++. +.+|+++||||||+|
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 00 12344555663 45666778999999998777666 889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
||+.....+ ..+++.+.+.|.++|++||+++++.
T Consensus 426 LD~~~~~~l-~~~l~~~~~~g~tviivtHd~~~~~ 459 (501)
T PRK10762 426 VDVGAKKEI-YQLINQFKAEGLSIILVSSEMPEVL 459 (501)
T ss_pred CCHhHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 999888888 5555556667999999999998764
No 271
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.68 E-value=1.5e-16 Score=189.27 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=99.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----------------------hcCceeccCcCCc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------ICGLMVPAESASI--- 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----------------------~~g~~vp~~~~~~--- 708 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...++|+.....
T Consensus 272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 4568999999 8999999999999999999999974210 0122444431100
Q ss_pred --c-------------------------hHHHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 709 --P-------------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 709 --~-------------------------~~~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
. .+..++..++..+ ......+++|+||+|...++++ +.+|+++||||||+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 0 1123444566655 5566778999999997776655 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcC-cEEEEeccChhhhh
Q 002090 760 TETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFS 794 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g-~~vl~~TH~~el~~ 794 (968)
||+.....+ ..++..+++.+ .++|++||+.+++.
T Consensus 432 LD~~~~~~l-~~~L~~l~~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 432 LDPLNRQLV-RRFVDVLISEGETQLLFVSHHAEDAP 466 (490)
T ss_pred CCHHHHHHH-HHHHHHHHhcCCcEEEEEecchhhhh
Confidence 999888888 45555555554 57999999998874
No 272
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.67 E-value=3.6e-16 Score=170.36 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=95.2
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcch----
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~~---- 710 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++.
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~ 113 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF 113 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH
Confidence 579999999 899999999999999999999998521 1122456655332110
Q ss_pred ------------HHHHHhhcC-----------CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 711 ------------FDAIMLHMK-----------SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 711 ------------~~~i~~~~~-----------~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
........+ ....+......+|+|++|...++++ +.+|+++||||||+|+|+....
T Consensus 114 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~ 193 (257)
T cd03288 114 NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193 (257)
T ss_pred hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 011111111 1122223345789999987766655 8999999999999999998776
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.+ ..+++.+. .+.|+|++||+++....++
T Consensus 194 ~l-~~~l~~~~-~~~tiii~sh~~~~~~~~d 222 (257)
T cd03288 194 IL-QKVVMTAF-ADRTVVTIAHRVSTILDAD 222 (257)
T ss_pred HH-HHHHHHhc-CCCEEEEEecChHHHHhCC
Confidence 66 44445554 4899999999999876433
No 273
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.6e-16 Score=160.41 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=99.9
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCceeccCcCC-cch-
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAESAS-IPY- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~vp~~~~~-~~~- 710 (968)
.++.++++++| |++++|+||||+|||||||.++|-. -+|+.-...||.... +++
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 46789999999 8999999999999999999999974 233333334443211 111
Q ss_pred ------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHH---HHhC----CCCcEEEEeCCCCC
Q 002090 711 ------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI---VTAT----TSRSLVLIDEICRG 759 (968)
Q Consensus 711 ------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~i---l~~a----~~~~LlLlDEp~~G 759 (968)
..+.+...+...--.+...++|+|.+|...+ ++.. ..+..++|||||+.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 1223333333333344456788888876554 4443 34569999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
||......+ ..+.+.+...|..|+.+-||++++. ++++
T Consensus 172 LDi~HQ~~t-l~laR~la~~g~~V~~VLHDLNLAA~YaDr 210 (259)
T COG4559 172 LDIAHQHHT-LRLARQLAREGGAVLAVLHDLNLAAQYADR 210 (259)
T ss_pred cchHHHHHH-HHHHHHHHhcCCcEEEEEccchHHHHhhhe
Confidence 999998887 6777888888999999999999985 3443
No 274
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.7e-16 Score=180.50 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=113.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------h-hcC-ceeccCcCCcc--
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------G-ICG-LMVPAESASIP-- 709 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a-~~g-~~vp~~~~~~~-- 709 (968)
++..++++++| |++++++|.||||||||||+|+|.... | ..| ..|.|+-+.+|
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~L 98 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNL 98 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCc
Confidence 56789999999 899999999999999999999998621 0 111 12333322221
Q ss_pred -----------------hH---------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 710 -----------------YF---------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 710 -----------------~~---------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
++ ..++.+++....+.....++|.+++|+..|+++ +.++++|||||||+.|+.
T Consensus 99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~ 178 (500)
T COG1129 99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178 (500)
T ss_pred cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 11 245566676555778888999999999999887 678889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhh-hhccccccccccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAAYK 805 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el-~~~~~~~~~~~~~ 805 (968)
.+...+ -.+++.|+++|.++||+||.++. .+++++...+..+
T Consensus 179 ~E~~~L-f~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG 221 (500)
T COG1129 179 KETERL-FDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDG 221 (500)
T ss_pred HHHHHH-HHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCC
Confidence 998888 78888899999999999998764 4666655444443
No 275
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.5e-16 Score=171.49 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=99.9
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------------hcCceeccCcC
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------------ICGLMVPAESA 706 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------------~~g~~vp~~~~ 706 (968)
+++.++++++| |++++|+||||||||||+++|+|+.... +...|+|+...
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 45679999999 8999999999999999999999985311 11235555433
Q ss_pred Ccc---hHHH----------------------HHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 707 SIP---YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 707 ~~~---~~~~----------------------i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
.++ ..++ ++..++.. +........+|.|++|...++++ +.+|+++|||||
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 221 1111 22233443 12344557789999987776655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
|+|||+.....+ ..++..+.+ ++|+|++||+.+.+ ..+++.
T Consensus 181 t~~LD~~~~~~l-~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v 222 (257)
T PRK14246 181 TSMIDIVNSQAI-EKLITELKN-EIAIVIVSHNPQQVARVADYV 222 (257)
T ss_pred CccCCHHHHHHH-HHHHHHHhc-CcEEEEEECCHHHHHHhCCEE
Confidence 999999887777 555555554 68999999999876 445433
No 276
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.67 E-value=1.6e-16 Score=208.52 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=113.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcch----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~~---- 710 (968)
++.++++++| |++++|+||||||||||||+|+|+... .+...++|+....++.
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 5679999999 899999999999999999999999521 1223467775432210
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
++.++..++..+......+++|+||+|...++.+ +.+|+++||||||+|+|+..+..+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 2345566777776777788999999997766554 899999999999999999888888
Q ss_pred HHHHHHHHhcCcEEEEeccChhhhh-ccccccccccceeEE
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGT 809 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~~~ 809 (968)
+.+++.++ .|.++|++||+++.++ ++++...+..+.+..
T Consensus 1101 ~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1101 WDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred HHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 56666665 4899999999999875 566555555555443
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.1e-16 Score=188.13 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=102.1
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcC---Ccc-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA---SIP- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~---~~~- 709 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 458999988 899999999999999999999998511 011235555421 000
Q ss_pred --h---------------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 710 --Y---------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 710 --~---------------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
. +..++..++.. +.......++|+|++|...+++. +.+|+++||||||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 0 11233344553 34567778999999997777665 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
|+|+.....+ ..+++.+.+.|.|+|++|||++++. ++++
T Consensus 421 gLD~~~~~~~-~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 421 GIDVGAKFEI-YQLIAELAKKDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred ccChhHHHHH-HHHHHHHHHCCCEEEEECCChHHHHhhCCE
Confidence 9999888888 5566667777999999999998764 4443
No 278
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.9e-16 Score=169.58 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=97.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--h-------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--l-------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|++..
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 4678999998 89999999999999999999999742 1 011235565533
Q ss_pred Ccc--hHHHH----------------------HhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~i----------------------~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+.+ +..++.. +........+|+|++|...+++. +.+|+++||||||
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 221 11111 1112221 12334556899999997776655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|||+.....+ ..+++.+.+ +.|+|++||+.+.+. .+++.
T Consensus 177 ~~LD~~~~~~l-~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i 217 (252)
T PRK14255 177 SALDPISSTQI-ENMLLELRD-QYTIILVTHSMHQASRISDKT 217 (252)
T ss_pred ccCCHHHHHHH-HHHHHHHHh-CCEEEEEECCHHHHHHhCCEE
Confidence 99999888888 444444555 589999999998763 45543
No 279
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.3e-16 Score=161.63 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=103.8
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH----------------------HhhhcCceec-cCcCCcch-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS----------------------LLGICGLMVP-AESASIPY- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~----------------------~la~~g~~vp-~~~~~~~~- 710 (968)
+.+++++++ |++.+|+||||||||||.++|+|.- -.|+.|.|+. |.+..++-
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 599999999 8999999999999999999999972 2366676652 32222211
Q ss_pred --------------------------HHHHHhhcCCCCC-ccCC-ccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 711 --------------------------FDAIMLHMKSYDS-PADG-KSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 711 --------------------------~~~i~~~~~~~d~-~~~~-~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
+......++..+. +.+. -..||+|.++...+++. +.+|++.|||||-||+|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 1112233343331 1111 13699999999999887 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcc
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
. ++..+....++.+++.|..++++|||.+++++.
T Consensus 177 I-dalk~V~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 177 I-DALKIVAEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred H-HHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 9 667777888888999999999999999998764
No 280
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.67 E-value=2.1e-16 Score=189.73 Aligned_cols=147 Identities=18% Similarity=0.097 Sum_probs=105.5
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-----------------------------hcCceeccCc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------------------ICGLMVPAES 705 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-----------------------------~~g~~vp~~~ 705 (968)
+.++++++| |++++|+||||||||||+|+|+|++... +...++|+..
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 579999999 8999999999999999999999986420 1123566653
Q ss_pred C--Ccc---h----------------------HHHHHhhcCCCC---CccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 706 A--SIP---Y----------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 706 ~--~~~---~----------------------~~~i~~~~~~~d---~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
. ..+ . ++.++..+++.+ ......+++|+|++|...++++ +.+|+++|||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 2 110 0 112334445543 2355678999999998877766 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccccccccccce
Q 002090 755 EICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKA 806 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~~~~~~~~ 806 (968)
|||+|||+.....+ ..+++.+++ .|.|+|++||+++.+. ++++...+.+++
T Consensus 182 EPt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~ 234 (529)
T PRK15134 182 EPTTALDVSVQAQI-LQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234 (529)
T ss_pred CCCCccCHHHHHHH-HHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCE
Confidence 99999999888888 455555654 4899999999998764 455444433433
No 281
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.67 E-value=4.1e-16 Score=186.89 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=101.9
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-------h--h------------------hcCceeccCcCC
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------L--G------------------ICGLMVPAESAS 707 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-------l--a------------------~~g~~vp~~~~~ 707 (968)
+.++++++| |++++|+||||||||||+|+|+|+.. + . +...|+|++...
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 579999998 89999999999999999999999852 1 1 012356665322
Q ss_pred cc---hH--------------------HHHHhhcCCCC-----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 708 IP---YF--------------------DAIMLHMKSYD-----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 708 ~~---~~--------------------~~i~~~~~~~d-----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
++ .. ..++..++..+ .......++|+||+|+..++++ +.+|+++||||||+
T Consensus 377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~ 456 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 11 11 12344556543 3456778999999997777655 88999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
|||+.....+...+.+...+.|.++|++||+++++. ++++
T Consensus 457 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 999988888854444433445899999999998764 3443
No 282
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.4e-16 Score=172.07 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=97.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------h--------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a--------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... + +...|+|+...
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 4579999999 899999999999999999999997521 0 11235666533
Q ss_pred Ccc--hHHHH--------------------HhhcCC----CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 707 SIP--YFDAI--------------------MLHMKS----YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 707 ~~~--~~~~i--------------------~~~~~~----~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
.++ ..+++ +..++. .+........+|+|++|...++++ +.+|+++||||||+|
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~ 191 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 221 11221 112222 122344567899999987776655 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
||+.....+.. ++..+.+ +.++|++||+.+.+. .+++
T Consensus 192 LD~~~~~~l~~-~L~~~~~-~~tiii~sH~~~~~~~~~d~ 229 (274)
T PRK14265 192 LDPISTRQVEE-LCLELKE-QYTIIMVTHNMQQASRVADW 229 (274)
T ss_pred CCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 99988888754 4444554 689999999998764 4443
No 283
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.67 E-value=3.6e-16 Score=172.06 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=96.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh-------cCceeccCcCCc--chHHHH----------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASI--PYFDAI---------- 714 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~-------~g~~vp~~~~~~--~~~~~i---------- 714 (968)
++.++++++| |++++|+||||||||||+|+|+|+..... ...|+|+..... ...+.+
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~ 128 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYR 128 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHH
Confidence 3569999998 89999999999999999999999863221 123566654221 111111
Q ss_pred ----HhhcCCCC-----------CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 002090 715 ----MLHMKSYD-----------SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 778 (968)
Q Consensus 715 ----~~~~~~~d-----------~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~ 778 (968)
...++..+ .+......+|+|+++...+++. +.+|+++|||||++|+|+.....+...+++.+.+
T Consensus 129 ~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~ 208 (282)
T cd03291 129 YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208 (282)
T ss_pred HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC
Confidence 11112111 1112235889999987776655 8899999999999999998877776666666554
Q ss_pred cCcEEEEeccChhhhhcc
Q 002090 779 IGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 779 ~g~~vl~~TH~~el~~~~ 796 (968)
+.++|++||+.+....+
T Consensus 209 -~~tIiiisH~~~~~~~~ 225 (282)
T cd03291 209 -NKTRILVTSKMEHLKKA 225 (282)
T ss_pred -CCEEEEEeCChHHHHhC
Confidence 78999999999886543
No 284
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.67 E-value=1.8e-16 Score=167.85 Aligned_cols=135 Identities=17% Similarity=0.134 Sum_probs=92.3
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCce-------ecc--CcCCc---chHHHH----------
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM-------VPA--ESASI---PYFDAI---------- 714 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~-------vp~--~~~~~---~~~~~i---------- 714 (968)
++++++| |++++|+||||||||||+|+|+|+.... .|.. ++. ....+ ...+.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 6788888 8999999999999999999999986321 2221 111 11111 111111
Q ss_pred --------HhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 002090 715 --------MLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 785 (968)
Q Consensus 715 --------~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~ 785 (968)
...++..+......+.+|.+|++...++.+ +.+|+++|||||++++|+.....+...+.+.+++ .++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~ 158 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIV 158 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEE
Confidence 111222233344567889999987665554 8999999999999999998888876666666543 57899
Q ss_pred eccChhhhh-cccc
Q 002090 786 STHLHGIFS-LPLK 798 (968)
Q Consensus 786 ~TH~~el~~-~~~~ 798 (968)
+||+++... ++++
T Consensus 159 vsH~~~~~~~~~d~ 172 (213)
T PRK15177 159 LTHNPRLIKEHCHA 172 (213)
T ss_pred EECCHHHHHHhcCe
Confidence 999998764 4443
No 285
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.9e-16 Score=168.96 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=96.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------h--------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a--------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... . +...|+|++..
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 5679999998 899999999999999999999987421 0 01234555432
Q ss_pred Ccc--hHHH----------------------HHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~----------------------i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..++ ++..++.. +.+......+|+|+++...+++. +.+|+++|||||+
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 177 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 211 1111 11222221 12334556789999987766655 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|+|+.....+ ..+++.+.+ +.++|++||+.+.+. .+++.
T Consensus 178 ~gLD~~~~~~l-~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v 218 (253)
T PRK14261 178 SALDPIATAKI-EDLIEDLKK-EYTVIIVTHNMQQAARVSDYT 218 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHhh-CceEEEEEcCHHHHHhhCCEE
Confidence 99999888877 455555555 589999999998763 44433
No 286
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.67 E-value=2.1e-16 Score=189.82 Aligned_cols=141 Identities=15% Similarity=0.112 Sum_probs=103.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH------h----------------hhcCceeccCcC--Cc-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------L----------------GICGLMVPAESA--SI- 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~------l----------------a~~g~~vp~~~~--~~- 708 (968)
++.+++++|| |++++|+||||||||||+|+|+|+.. + .+...|+|+... .+
T Consensus 298 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred cceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 3579999998 89999999999999999999999851 0 111246666531 11
Q ss_pred --chH-----------------------HHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 709 --PYF-----------------------DAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 709 --~~~-----------------------~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
... ..++..++.. +.......++|+||+|...+++. +.+|+++||||||+|||
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 111 1234445654 34556678999999998777666 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 762 TAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+.....+.. +++.+++ .|.++|++||+++++. ++++.
T Consensus 458 ~~~~~~l~~-~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 458 KTVQAQILA-LLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred HHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 988888854 4445554 5899999999998764 44443
No 287
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5e-16 Score=173.33 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=96.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+|||||||||||++|+|+... .+...|+|+...
T Consensus 57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 4679999998 899999999999999999999998521 011235665533
Q ss_pred Cc--chHHHH----------------------------------HhhcCCC----CCccCCccchHHHHHHHHHHHHh-C
Q 002090 707 SI--PYFDAI----------------------------------MLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-T 745 (968)
Q Consensus 707 ~~--~~~~~i----------------------------------~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a 745 (968)
.+ ...+++ +..++.. +........+|+|++|...++++ +
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 21 111111 1112221 12234457799999987776655 8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccc
Q 002090 746 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 797 (968)
Q Consensus 746 ~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~ 797 (968)
.+|+++|||||++|||+.....+ ..+++.+++ +.++|++||+++.+. +++
T Consensus 217 ~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~-~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 217 VDPEVILMDEPASALDPIATSKI-EDLIEELAE-EYTVVVVTHNMQQAARISD 267 (305)
T ss_pred cCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc-CCEEEEEEcCHHHHHHhcC
Confidence 99999999999999999887777 555555655 489999999998754 444
No 288
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5.8e-16 Score=167.98 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=97.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------------hcCceeccCcCC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------------ICGLMVPAESAS 707 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------------~~g~~vp~~~~~ 707 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|++...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 4679999998 8999999999999999999999985320 112355554332
Q ss_pred cc--hHHHHH----------------------hhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 708 IP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 708 ~~--~~~~i~----------------------~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
++ ..+++. ..++.. +.+......+|+|++|...+++. +.+|+++||||||+
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 174 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 21 111111 112221 12234456799999987776665 88999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
|+|+.....+ ..+++.+.+ +.|+|++||+.+.+. .+++.
T Consensus 175 ~LD~~~~~~l-~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i 214 (249)
T PRK14253 175 ALDPIATHKI-EELMEELKK-NYTIVIVTHSMQQARRISDRT 214 (249)
T ss_pred cCCHHHHHHH-HHHHHHHhc-CCeEEEEecCHHHHHHhCCEE
Confidence 9999877777 555666655 589999999998754 44433
No 289
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.1e-16 Score=191.28 Aligned_cols=140 Identities=12% Similarity=0.107 Sum_probs=103.5
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcC--Ccc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SIP 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~--~~~ 709 (968)
..++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... ..+
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 468999999 899999999999999999999998510 112346777631 111
Q ss_pred ---h----------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 710 ---Y----------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 710 ---~----------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
. +..++..+++. +.......++|+||+|...++++ +.+|+||||||||+|||+
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1 11244455664 34566778999999998777665 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
.....+...+.+...+.|.++|++|||++++. ++++
T Consensus 497 ~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dr 533 (623)
T PRK10261 497 SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHR 533 (623)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 88888854444433445899999999998764 4443
No 290
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.7e-16 Score=172.70 Aligned_cols=135 Identities=21% Similarity=0.252 Sum_probs=97.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----h-----------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G-----------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----a-----------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... . +...|+|+...
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 4679999999 899999999999999999999998521 0 01235555432
Q ss_pred Ccc--hHH--------------------HHHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 707 SIP--YFD--------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 707 ~~~--~~~--------------------~i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
.++ ..+ .++..++.. +.+......+|+|++|...++++ +.+|+++||||||+|
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~ 210 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA 210 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 211 111 122233432 22345667899999997776655 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
||+.....+ ..+++.+.+ +.++|++||+.+++.
T Consensus 211 LD~~~~~~l-~~~L~~~~~-~~tiii~tH~~~~i~ 243 (285)
T PRK14254 211 LDPVATSKI-EDLIEELAE-EYTVVIVTHNMQQAA 243 (285)
T ss_pred CCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 999877777 555555555 479999999998764
No 291
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6e-16 Score=168.09 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=97.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+...
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 4568999998 8999999999999999999999985321 11224555432
Q ss_pred Ccc--hHHHH----------------------HhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~i----------------------~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+++ ...++.. +........+|+|++|...++++ +.+|+++||||||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 175 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 221 11111 1112221 12345566799999987776655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|||+.....+.. +++.+. .+.|+|++||+.+.+. .+++.
T Consensus 176 ~~LD~~~~~~l~~-~l~~~~-~~~tilivsh~~~~~~~~~d~i 216 (251)
T PRK14249 176 SALDPVSTMRIEE-LMQELK-QNYTIAIVTHNMQQAARASDWT 216 (251)
T ss_pred ccCCHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHhhCCEE
Confidence 9999988887744 555555 4899999999998764 33433
No 292
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=7.4e-16 Score=148.54 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=112.8
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------------hhcCceeccCcC
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------------GICGLMVPAESA 706 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------------a~~g~~vp~~~~ 706 (968)
|...++-||++ |+.+++.||+|+|||||+|.+..+... .+...+|.+...
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 55678999999 899999999999999999999887421 122223333332
Q ss_pred CcchH-------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002090 707 SIPYF-------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGT 760 (968)
Q Consensus 707 ~~~~~-------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~Gl 760 (968)
..|.. .+++.++...+......-.+|+|++|...|.++ +++|.++|+||||+.|
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaal 172 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccccc
Confidence 22221 245666677777777777889999998887766 8999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc-cccccccccceeE
Q 002090 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL-PLKIKNAAYKAMG 808 (968)
Q Consensus 761 D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~-~~~~~~~~~~~~~ 808 (968)
||+-...+ ..|++.|...|.|-+++||..+.++- +.+...+.++++.
T Consensus 173 dpeitaqv-v~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 173 DPEITAQI-VSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred CHHHHHHH-HHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 99887777 78888899999999999999998753 3333344444443
No 293
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.1e-16 Score=190.23 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=106.7
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------h---------------------------hcCce
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G---------------------------ICGLM 700 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a---------------------------~~g~~ 700 (968)
..+++++|| |++++|+||||||||||+|+|+|++.. . +...+
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 579999999 899999999999999999999998521 0 01235
Q ss_pred eccCc--CCc---ch----------------------HHHHHhhcCCCC---CccCCccchHHHHHHHHHHHHh-CCCCc
Q 002090 701 VPAES--ASI---PY----------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRSIVTA-TTSRS 749 (968)
Q Consensus 701 vp~~~--~~~---~~----------------------~~~i~~~~~~~d---~~~~~~s~fs~~~~~~~~il~~-a~~~~ 749 (968)
|++.. ... .. +..++..+++.+ .+.....++|+||+|...|+.+ +.+|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 66653 111 11 112445556642 3456778999999998777665 89999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhh-hccccccccccce
Q 002090 750 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 750 LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
|+||||||+|||+.....+ ..+++.+.+ .|+++|++||+++.+ .++++...+.++.
T Consensus 189 lLllDEPt~~LD~~~~~~l-~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQI-LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred EEEEeCCCCccCHHHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 9999999999999888887 556666654 589999999999875 4555544444443
No 294
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.7e-16 Score=168.28 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=98.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------------------------hcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------------------------~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||+|||||+|+|+|+.... +...|+|+...
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 4679999998 8999999999999999999999985211 01225555432
Q ss_pred Ccc---hHHHHH----------------------hhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 707 SIP---YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 707 ~~~---~~~~i~----------------------~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
.++ ..+++. ..++.. +......+.+|+|+++...++++ +.+|+++|||||
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 221 122221 111111 12234457899999987766655 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKN 801 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~ 801 (968)
++|+|+.....+ ..+++.+++ +.|+|++||+.+.+. .+++.-.
T Consensus 176 ~~~LD~~~~~~l-~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14272 176 TSALDPASTARI-EDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSF 219 (252)
T ss_pred CccCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEE
Confidence 999999887777 445555654 699999999998764 4454433
No 295
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7.1e-16 Score=169.72 Aligned_cols=148 Identities=19% Similarity=0.244 Sum_probs=102.3
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------------hhcC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------------GICG 698 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------------a~~g 698 (968)
.++.+.+. ++.++++++| |++++|+||||||||||+|+|+|+... ....
T Consensus 25 ~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i 103 (276)
T PRK14271 25 VNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRV 103 (276)
T ss_pred eeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhhe
Confidence 34445553 5689999998 899999999999999999999998531 0112
Q ss_pred ceeccCcCCcc--hHH----------------------HHHhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCc
Q 002090 699 LMVPAESASIP--YFD----------------------AIMLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRS 749 (968)
Q Consensus 699 ~~vp~~~~~~~--~~~----------------------~i~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~ 749 (968)
.|+|+....++ ..+ .++..++... .+.....++|+|++|...+++. +.+|+
T Consensus 104 ~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~ 183 (276)
T PRK14271 104 GMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPE 183 (276)
T ss_pred EEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 35565432211 111 1122333322 1234566899999987776655 88999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 750 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 750 LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
++||||||+|+|+.....+ ..+++.+.+ +.|+|++||+.+.+ +.+++.
T Consensus 184 lllLDEPt~~LD~~~~~~l-~~~L~~~~~-~~tiiivsH~~~~~~~~~dri 232 (276)
T PRK14271 184 VLLLDEPTSALDPTTTEKI-EEFIRSLAD-RLTVIIVTHNLAQAARISDRA 232 (276)
T ss_pred EEEEcCCcccCCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999999887777 445555555 58999999999875 345543
No 296
>PRK13409 putative ATPase RIL; Provisional
Probab=99.66 E-value=3.7e-16 Score=188.24 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=101.8
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcCCc---c----------------
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASI---P---------------- 709 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~~~---~---------------- 709 (968)
..++++++ |++++|+||||||||||+|+|+|+.... ....|+|+..... .
T Consensus 353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 45777776 8999999999999999999999986321 1123567653211 1
Q ss_pred hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEecc
Q 002090 710 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788 (968)
Q Consensus 710 ~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH 788 (968)
..+.++..+++.+......+++|+|++|...+++. +.+|+++||||||+|||+.....+...+.+...+.|.++|++||
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsH 512 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDH 512 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 11345556677666778889999999997776665 89999999999999999988888854444443445899999999
Q ss_pred Chhhhh
Q 002090 789 LHGIFS 794 (968)
Q Consensus 789 ~~el~~ 794 (968)
|++++.
T Consensus 513 D~~~~~ 518 (590)
T PRK13409 513 DIYMID 518 (590)
T ss_pred CHHHHH
Confidence 998865
No 297
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.7e-16 Score=169.52 Aligned_cols=140 Identities=15% Similarity=0.191 Sum_probs=96.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----hhc-----------------------CceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC-----------------------GLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----a~~-----------------------g~~vp~~~~ 706 (968)
++.++++++| |++++|+|+||||||||+|+|+|+... ... ..|+|++..
T Consensus 36 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 4578999998 899999999999999999999998530 111 224555432
Q ss_pred Cc--chHHHHH----------------------hhcC----CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SI--PYFDAIM----------------------LHMK----SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~--~~~~~i~----------------------~~~~----~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.+ ...+++. ..++ ..+.+......+|+|++|...+++. +.+|+++||||||
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 21 1112221 0111 1112234556789999987776655 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|+|+.....+.. ++..+.+ +.++|++||+++.+. .+++.
T Consensus 196 ~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 196 SALDPISTLKVEE-LVQELKK-DYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred CcCCHHHHHHHHH-HHHHHHc-CCEEEEEEcCHHHHHHhCCEE
Confidence 9999988887754 5555555 689999999998754 45543
No 298
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.1e-16 Score=174.54 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=104.0
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAES 705 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~ 705 (968)
+...++++++| |++++|+||||||||||+++|+|+... .+...++|+..
T Consensus 93 ~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 34579999999 899999999999999999999998631 11233566654
Q ss_pred CCc--chHHHH----------------------HhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 706 ASI--PYFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 706 ~~~--~~~~~i----------------------~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
..+ ...+++ +..++.. +.+......+|+|++|+..++++ +.+|+++|||||
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEP 252 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 322 111111 1222321 23456667899999998777765 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 805 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~ 805 (968)
|+|+|+.....+ ..+++.+.+ ++|+|++||+++.+. .+++...+..+
T Consensus 253 ts~LD~~~~~~i-~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 253 TSALDPIATAKI-EELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred cccCCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999887776 555556655 699999999998864 35544333333
No 299
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.1e-16 Score=169.98 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=98.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++..
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 4579999998 899999999999999999999998431 011235555432
Q ss_pred Ccc--hHHHH----------------------HhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~i----------------------~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+++ ...++..+ .+......+|+|++|...++++ +.+|+++||||||
T Consensus 117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 196 (272)
T PRK14236 117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196 (272)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 221 11111 11222221 1234456789999987776655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKN 801 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~ 801 (968)
+|+|+.....+ ..++..+.+ +.++|++||+.+.+ +.+++.-.
T Consensus 197 ~gLD~~~~~~l-~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~ 239 (272)
T PRK14236 197 SALDPISTLKI-EELITELKS-KYTIVIVTHNMQQAARVSDYTAF 239 (272)
T ss_pred ccCCHHHHHHH-HHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEE
Confidence 99999887777 555555555 68999999999875 34554433
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.7e-16 Score=187.68 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=98.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------hcCceeccCcCCcc---------------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIP--------------- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------~~g~~vp~~~~~~~--------------- 709 (968)
++.++++++| |++++|+||||||||||||+|+|+.... ....|+|+....++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 92 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTEL 92 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHH
Confidence 4679999998 8999999999999999999999986321 11135555432110
Q ss_pred -----------------------------------------hHHHHHhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CC
Q 002090 710 -----------------------------------------YFDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TT 746 (968)
Q Consensus 710 -----------------------------------------~~~~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~ 746 (968)
.+..++..++..+.. ....+++|+||++...+++. +.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence 011233445554333 24568899999998877765 88
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 747 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 747 ~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+|+++||||||+|||+.....+... +.+.|.+||++||+.+++. .+++.
T Consensus 173 ~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~~~tiiivsHd~~~~~~~~d~i 222 (530)
T PRK15064 173 NPDILLLDEPTNNLDINTIRWLEDV----LNERNSTMIIISHDRHFLNSVCTHM 222 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHH----HHhCCCeEEEEeCCHHHHHhhcceE
Confidence 9999999999999999887666333 3346899999999998754 44433
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=4.7e-16 Score=187.61 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=98.4
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------hcCceeccCcCCc---chHHH
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASI---PYFDA 713 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------~~g~~vp~~~~~~---~~~~~ 713 (968)
++.+.+.+++.++++++| |++++|+||||||||||||+|+|+.... ....|+|+..... ...+.
T Consensus 11 ~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~ 90 (556)
T PRK11819 11 RVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVREN 90 (556)
T ss_pred eEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHH
Confidence 333444325789999999 8999999999999999999999986321 1123677764322 11121
Q ss_pred H---------------------------------------------------------HhhcCCCCCccCCccchHHHHH
Q 002090 714 I---------------------------------------------------------MLHMKSYDSPADGKSSFQVEMS 736 (968)
Q Consensus 714 i---------------------------------------------------------~~~~~~~d~~~~~~s~fs~~~~ 736 (968)
+ +..++.. ......+++|+||+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqk 169 (556)
T PRK11819 91 VEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGER 169 (556)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHH
Confidence 1 1112222 23456678999999
Q ss_pred HHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 737 EIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 737 ~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+...+++. +.+|+++||||||+|||+.....+ ..++..+ +.++|++||+.+++.
T Consensus 170 qrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l-~~~L~~~---~~tviiisHd~~~~~ 224 (556)
T PRK11819 170 RRVALCRLLLEKPDMLLLDEPTNHLDAESVAWL-EQFLHDY---PGTVVAVTHDRYFLD 224 (556)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHH-HHHHHhC---CCeEEEEeCCHHHHH
Confidence 97776665 899999999999999999876666 3333333 459999999998765
No 302
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.5e-16 Score=167.77 Aligned_cols=140 Identities=19% Similarity=0.166 Sum_probs=97.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------------hhcCceeccCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAES 705 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------------a~~g~~vp~~~ 705 (968)
++..++++++| |++++|+||||||||||+|+|+|+... .+...|+|++.
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 45679999999 899999999999999999999998532 01123455543
Q ss_pred CCc--chHH--------------------HHHhhcCCCCC----ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 706 ASI--PYFD--------------------AIMLHMKSYDS----PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 706 ~~~--~~~~--------------------~i~~~~~~~d~----~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
..+ ...+ .++..++.... .......+|+|++|...++++ +.+|+++||||||+
T Consensus 99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPts 178 (261)
T PRK14263 99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178 (261)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 221 1111 12233333221 223456789999987776655 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~ 798 (968)
|+|+.....+... ++.+.+ +.++|++||+++.+ +++++
T Consensus 179 gLD~~~~~~l~~~-l~~~~~-~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 179 ALDPIATRRVEEL-MVELKK-DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred cCCHHHHHHHHHH-HHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence 9999888887444 445554 78999999999865 34443
No 303
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.4e-16 Score=167.89 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=96.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----hc-----------------------CceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----IC-----------------------GLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----~~-----------------------g~~vp~~~~ 706 (968)
+..++++++| |++++|+||||||||||+++|+|+.... .. ..++|+...
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 3468999998 8999999999999999999999986421 01 123444322
Q ss_pred Ccc--hHHH----------------------HHhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDA----------------------IMLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~----------------------i~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+. ++..++..+ .......++|+|+++...+++. +.+|+++||||||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~ 178 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 111 1111 111223211 2234556899999997776665 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-hcCcEEEEeccChhhhh-cccc
Q 002090 758 RGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~-~~g~~vl~~TH~~el~~-~~~~ 798 (968)
+|+|+.....+...+. .++ +.|.|+|++||+++.+. ++++
T Consensus 179 ~~LD~~~~~~l~~~l~-~l~~~~~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 179 FGLDPIASMKVESLIQ-SLRLRSELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred ccCCHHHHHHHHHHHH-HHHHhCCCEEEEEECCHHHHHHhcCE
Confidence 9999988777744444 444 45899999999998764 4443
No 304
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=166.99 Aligned_cols=140 Identities=21% Similarity=0.258 Sum_probs=97.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------------hhcCceeccC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------------GICGLMVPAE 704 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------------a~~g~~vp~~ 704 (968)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 4579999998 899999999999999999999997521 0112355554
Q ss_pred cCCcc--hHHH----------------------HHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~--~~~~----------------------i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...++ ..+. .+..++.. +........+|+|+++...+.++ +.+|+++||||
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 187 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 32111 1111 11122221 12234456789999987776655 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
||+|+|+.....+ ..+++.+++ +.++|++||+.+.+. .+++.
T Consensus 188 Pt~gLD~~~~~~l-~~~l~~l~~-~~tiiivth~~~~~~~~~d~i 230 (265)
T PRK14252 188 PTSALDPIATASI-EELISDLKN-KVTILIVTHNMQQAARVSDYT 230 (265)
T ss_pred CCccCCHHHHHHH-HHHHHHHHh-CCEEEEEecCHHHHHHhCCEE
Confidence 9999999887777 445555655 689999999998763 45443
No 305
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-15 Score=152.12 Aligned_cols=134 Identities=13% Similarity=0.163 Sum_probs=95.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcC-----c--------------ee---ccCcCCcch
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG-----L--------------MV---PAESASIPY 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g-----~--------------~v---p~~~~~~~~ 710 (968)
++..++.+++| |+++.|+||||+|||||||+|+|+.-....- . |+ |.-+..+..
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 56688888888 8999999999999999999999996221100 0 00 000000111
Q ss_pred ------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002090 711 ------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGS 771 (968)
Q Consensus 711 ------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ 771 (968)
+.+....+|..+........+|.|++++..+.+. ++.++|.|||||++++|......+ ..
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l-~~ 171 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL-TA 171 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH-HH
Confidence 1233445666666677778899999999988887 889999999999999999655555 55
Q ss_pred HHHHHHhcCcEEEEeccChh
Q 002090 772 IIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 772 ll~~l~~~g~~vl~~TH~~e 791 (968)
++..-..+|-.||++||..-
T Consensus 172 l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 172 LMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHhcCCCEEEEecCCcc
Confidence 55444456778999999643
No 306
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.65 E-value=7.3e-16 Score=185.84 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=112.4
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 704 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~ 704 (968)
+++.+.++++++++++++| |+.++|+||||||||||+|+++|+.. +.+...++|++
T Consensus 326 ~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 405 (547)
T PRK10522 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTD 405 (547)
T ss_pred EEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecC
Confidence 4555666655679999999 89999999999999999999999851 11223467775
Q ss_pred cCCcc-------------hHHHHHhhcCCCCCccCC-----ccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 705 SASIP-------------YFDAIMLHMKSYDSPADG-----KSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 705 ~~~~~-------------~~~~i~~~~~~~d~~~~~-----~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
...++ .+......++..+....+ -..+|+|++|...++++ +.+|+++||||||+++|+...
T Consensus 406 ~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~ 485 (547)
T PRK10522 406 FHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFR 485 (547)
T ss_pred hhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 43221 112234445554433221 25799999997776655 899999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccccc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 804 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~ 804 (968)
..+...+.+.+++.++|+|++||+.+....+++.-.+.+
T Consensus 486 ~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 486 REFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 888677766665568999999999887776655443333
No 307
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.65 E-value=8e-16 Score=177.75 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=113.9
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------------hhcCceeccCcC
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------------GICGLMVPAESA 706 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------------a~~g~~vp~~~~ 706 (968)
..+++|+|| |++++|+|.+||||||+.++|.|+... .....++||+..
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 368999999 899999999999999999999998511 122336676642
Q ss_pred C-cch--------------------------HHHHHhhcCCCCCccC--CccchHHHHHHHHHHHH-hCCCCcEEEEeCC
Q 002090 707 S-IPY--------------------------FDAIMLHMKSYDSPAD--GKSSFQVEMSEIRSIVT-ATTSRSLVLIDEI 756 (968)
Q Consensus 707 ~-~~~--------------------------~~~i~~~~~~~d~~~~--~~s~fs~~~~~~~~il~-~a~~~~LlLlDEp 756 (968)
. ++. ..+++..++..+.... ....||+||+|.+.|+. .+.+|+|+|+|||
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 1 110 1246667787776655 78899999999776654 4999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccccccccceeEEEeeCC
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDG 814 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~~~~~~~~ 814 (968)
|++||+.....|...+.+...+.|+++|++|||++++. +++ ++..++-+...+.|
T Consensus 182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aD---rv~Vm~~G~iVE~G 237 (539)
T COG1123 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELAD---RVVVMYKGEIVETG 237 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcC---eEEEEECCEEEEec
Confidence 99999999999966666666678999999999999864 444 44444444433333
No 308
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.3e-16 Score=167.38 Aligned_cols=135 Identities=17% Similarity=0.228 Sum_probs=95.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----hc-----------------------CceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----IC-----------------------GLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----~~-----------------------g~~vp~~~~ 706 (968)
++.++++++| |++++|+|+||||||||+|+|+|+.... .. ..++|++..
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 4578999998 8999999999999999999999975310 01 124454432
Q ss_pred Cc--chHH----------------------HHHhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SI--PYFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~--~~~~----------------------~i~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.+ ...+ +++..++.. +........+|+|+++...++++ +.+|+++||||||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11 1111 112223331 22345557899999987776655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+|+|+.....+. .++..+.+ +.|+|++||+++.+.
T Consensus 179 ~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~i~ 213 (259)
T PRK14260 179 SALDPIATMKVE-ELIHSLRS-ELTIAIVTHNMQQAT 213 (259)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 999998877774 44444555 589999999998764
No 309
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.64 E-value=2.3e-15 Score=182.65 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=112.8
Q ss_pred ccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCceeccC
Q 002090 650 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAE 704 (968)
Q Consensus 650 ~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~vp~~ 704 (968)
++.|.|..+ ..+++|+++ |+.++|+|+||||||||+|++.|+. -+.+...+||++
T Consensus 476 nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 476 NVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred EEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 445556544 569999999 8999999999999999999999985 234445578887
Q ss_pred cCCcc--hH------------HHHHh--------------hcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIP--YF------------DAIML--------------HMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~--~~------------~~i~~--------------~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...+. .. +++.. .+|.+-.+..+-+.+|+|++|+..++++ ..+|+++||||
T Consensus 556 ~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDE 635 (709)
T COG2274 556 PFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDE 635 (709)
T ss_pred chhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 54321 00 11111 1244445566678899999998877766 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
|||++|+.....+...+.+.. .|+|+|++||.+.....+++.-.+..+
T Consensus 636 aTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 636 ATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred cccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhhhccEEEEccCC
Confidence 999999988777755555543 369999999999988877654443333
No 310
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.5e-15 Score=164.73 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=94.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--h-------------------------hhcCceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--l-------------------------a~~g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+.- . .+...|+|++..
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 4579999998 89999999999999999999999742 1 011235555433
Q ss_pred Ccc--hHHHH----------------------HhhcCCCC----CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 707 SIP--YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 707 ~~~--~~~~i----------------------~~~~~~~d----~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++ ..+++ ...++..+ ........+|+|++|...++++ +.+|+++|||||+
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 221 11111 11222211 1234456789999987766655 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
+|+|+.....+ ..++..+++ +.++|++||+.+.+..
T Consensus 175 ~gLD~~~~~~l-~~~l~~~~~-~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 175 SALDPISTTKI-EDLIHKLKE-DYTIVIVTHNMQQATR 210 (250)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCeEEEEECCHHHHHh
Confidence 99999888877 444555554 7899999999987543
No 311
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=170.93 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=115.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~--- 709 (968)
+..+.++++| |++.+|+|.||+||||||+++.|+... +....+|.|....++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT 95 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc
Confidence 6678888988 899999999999999999999998611 111123433332221
Q ss_pred ------------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 ------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 ------------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
.+..+..++|..-++....+.+|.+++|...|++. ..+++++||||||+-|.|.+
T Consensus 96 V~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E 175 (501)
T COG3845 96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175 (501)
T ss_pred hhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 12356677788888888889999999999999988 78999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccccccccce
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
...+ ..+++.+++.|++|||+||-++.+ +.+++...+..++
T Consensus 176 ~~~l-f~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 176 ADEL-FEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217 (501)
T ss_pred HHHH-HHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCe
Confidence 9998 777788999999999999987554 5566655544444
No 312
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=3.5e-16 Score=162.56 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=108.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------hhcCceeccCcCCc---------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------GICGLMVPAESASI--------- 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------a~~g~~vp~~~~~~--------- 708 (968)
....+++|||| |+.++|+|+||||||||+|+|+|+..+ .-.+.|-|.-...-
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 34689999999 899999999999999999999999632 22223333321110
Q ss_pred --------chHHHHHhhcCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 002090 709 --------PYFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779 (968)
Q Consensus 709 --------~~~~~i~~~~~~~d~~~~~~s~fs~~~~~-~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~ 779 (968)
..++.|...-.+.+-+..+..++|.||+- ++..++...+|+++|+||..+--|+.-...- ...++.+.++
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~-~~rl~e~~~~ 196 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC-LERLNELVEK 196 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH-HHHHHHHHHc
Confidence 11244555556677888899999999984 7777888999999999999999999776665 4444555556
Q ss_pred CcEEEEeccChhhhh-cccccccccccee
Q 002090 780 GCLGIVSTHLHGIFS-LPLKIKNAAYKAM 807 (968)
Q Consensus 780 g~~vl~~TH~~el~~-~~~~~~~~~~~~~ 807 (968)
+.|+|++||+++... ++++..-+..+.+
T Consensus 197 ~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i 225 (249)
T COG1134 197 NKTIVLVSHDLGAIKQYCDRAIWLEHGQI 225 (249)
T ss_pred CCEEEEEECCHHHHHHhcCeeEEEeCCEE
Confidence 799999999998764 4444433333333
No 313
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3.9e-16 Score=155.65 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=103.8
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCcee-----------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMV----------- 701 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~v----------- 701 (968)
+++.|++++|+ |.++.|+|||||||||||.+++.++- +|+.-+..
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 56789999998 89999999999999999999999851 12111111
Q ss_pred ----------ccCcCCc-----chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 702 ----------PAESASI-----PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 702 ----------p~~~~~~-----~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
|-..... ..+++....+...+--.+.+.++|+|++|++.++-. |++.+.++||||.++||-...
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHs 171 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHH
Confidence 1111111 123445555666666667778899999999887644 899999999999999999999
Q ss_pred HHHHHHHHHHH-HhcCcEEEEeccChhhhh
Q 002090 766 TCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 766 ~~i~~~ll~~l-~~~g~~vl~~TH~~el~~ 794 (968)
..+ +.+++.+ .+.|+|++++-||.+++.
T Consensus 172 v~i-Mk~Lrrla~el~KtiviVlHDINfAS 200 (252)
T COG4604 172 VQI-MKILRRLADELGKTIVVVLHDINFAS 200 (252)
T ss_pred HHH-HHHHHHHHHHhCCeEEEEEecccHHH
Confidence 999 5555555 567999999999999986
No 314
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=167.01 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=93.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----hhc-----------------------CceeccCcC
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC-----------------------GLMVPAESA 706 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----a~~-----------------------g~~vp~~~~ 706 (968)
++.++++++| |++++|+||||||||||+|+|+|+... ... ..++|+...
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 4578999998 899999999999999999999997521 011 124454432
Q ss_pred Ccc--hHHHH--------------------HhhcCCC----CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 707 SIP--YFDAI--------------------MLHMKSY----DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 707 ~~~--~~~~i--------------------~~~~~~~----d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
.++ ..+++ +..++.. +........+|+|++|...++++ +.+|+++|||||++|
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 211 11111 1122221 12234456799999987776655 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
||+.....+ ..++..+.+ +.++|++||+.+.+.
T Consensus 182 LD~~~~~~l-~~~L~~~~~-~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 182 LDPISTLRI-EELMHELKE-QYTIIIVTHNMQQAA 214 (264)
T ss_pred CCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHH
Confidence 999888887 555555555 589999999988653
No 315
>PRK13409 putative ATPase RIL; Provisional
Probab=99.64 E-value=6.7e-16 Score=186.05 Aligned_cols=140 Identities=15% Similarity=0.160 Sum_probs=104.1
Q ss_pred cccCCCceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhh--h--------------cC---------------
Q 002090 653 FDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG--I--------------CG--------------- 698 (968)
Q Consensus 653 ~~~~~~~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la--~--------------~g--------------- 698 (968)
..|.+..+++.+++. |++++|+||||||||||+|+|+|++... . .|
T Consensus 81 ~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 160 (590)
T PRK13409 81 HRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEI 160 (590)
T ss_pred EEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCc
Confidence 344444578998887 8999999999999999999999985211 0 01
Q ss_pred --ceeccCcCCcc------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 699 --LMVPAESASIP------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 699 --~~vp~~~~~~~------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.+.|+.....+ .++.++..+++.+......+++|+|++|...+++. +.+|+++||||||
T Consensus 161 ~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPt 240 (590)
T PRK13409 161 KVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240 (590)
T ss_pred ceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11122111111 12345566777766778889999999998777665 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+|||+.....+ ..+++.+.+ |.++|++||+++.+.
T Consensus 241 s~LD~~~~~~l-~~~i~~l~~-g~tvIivsHd~~~l~ 275 (590)
T PRK13409 241 SYLDIRQRLNV-ARLIRELAE-GKYVLVVEHDLAVLD 275 (590)
T ss_pred CCCCHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 99999888888 556666777 999999999998764
No 316
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.8e-15 Score=171.50 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=113.4
Q ss_pred eeEEcCCCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhc
Q 002090 642 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 697 (968)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~ 697 (968)
++.+. ..++.+.+++++++++|++| |+.++|+|+||||||||++.++|... ..+.
T Consensus 318 ~~ei~-~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 318 PIEIS-LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred Cceee-ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 34442 34566677777799999999 89999999999999999999999852 1233
Q ss_pred CceeccCcCCcch-----------------HHHHHhhc----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCc
Q 002090 698 GLMVPAESASIPY-----------------FDAIMLHM----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRS 749 (968)
Q Consensus 698 g~~vp~~~~~~~~-----------------~~~i~~~~----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~ 749 (968)
.++||+++-.++- ..+...+. |.+-.+..+-+.+|+|+.|+..+.++ ..+++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 4567776543320 11122222 22333445556789999987776666 78899
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccccccee
Q 002090 750 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807 (968)
Q Consensus 750 LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~ 807 (968)
++|+||||+++|.+....|...+ ..+.+ ++|+|++||.+..+..++..-.+.++..
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l-~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l 532 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQAL-QELAK-QKTVLVITHRLEDAADADRIVVLDNGRL 532 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHH-HHHHh-CCeEEEEEcChHHHhcCCEEEEecCCce
Confidence 99999999999997766664444 44544 4899999999888776665544444443
No 317
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.63 E-value=6.8e-16 Score=173.62 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=95.6
Q ss_pred EEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch------------------------
Q 002090 673 LTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY------------------------ 710 (968)
Q Consensus 673 I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~------------------------ 710 (968)
|+||||||||||||+|+|+... .+...|+|+....++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999998521 1112356665432211
Q ss_pred HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 711 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 711 ~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
++.++..+++.+.......++|+|++|...++++ +.+|+++|||||++|||+.....+...+.+...+.|.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 1234455666666677778999999997777665 899999999999999999888888555554444558999999999
Q ss_pred hhhh-hccccccccccce
Q 002090 790 HGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 790 ~el~-~~~~~~~~~~~~~ 806 (968)
.+.+ .++++...+.++.
T Consensus 161 ~~e~~~~~d~i~vl~~G~ 178 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGK 178 (325)
T ss_pred HHHHHHhCCEEEEEECCE
Confidence 9865 4555544443443
No 318
>PLN03211 ABC transporter G-25; Provisional
Probab=99.63 E-value=6.1e-16 Score=188.66 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=105.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------------------hcCceeccCcCCcc---h--
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---Y-- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------------------~~g~~vp~~~~~~~---~-- 710 (968)
++.+++++++ |++++|+|||||||||||++|+|..... +...|||++....+ .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 5679999998 8999999999999999999999985221 11246666543221 1
Q ss_pred ----------------------HHHHHhhcCCCCCc-----cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 711 ----------------------FDAIMLHMKSYDSP-----ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 711 ----------------------~~~i~~~~~~~d~~-----~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
++.++..++..+.. ......+|+|++|+..++.. +.+|+++||||||+|||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 12233444553322 12346799999987776655 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChh--hhhccccccccccceeE
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNAAYKAMG 808 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~e--l~~~~~~~~~~~~~~~~ 808 (968)
.....+ ..+++.+++.|.|+|++||+++ +.+++++.-.+..+++.
T Consensus 240 ~~~~~l-~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 240 TAAYRL-VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred HHHHHH-HHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 888888 5555566667999999999985 45666654444444443
No 319
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=6.6e-15 Score=166.94 Aligned_cols=163 Identities=17% Similarity=0.114 Sum_probs=122.8
Q ss_pred eEEcCCCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH-------------------HhhhcCc
Q 002090 643 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-------------------LLGICGL 699 (968)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~-------------------~la~~g~ 699 (968)
+.+.+.| +.+..++.|++++|| |+-++|+|+|||||||++|++.... -+.+...
T Consensus 352 I~F~dV~---f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVH---FSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeE---EEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 5554433 455667779999999 8999999999999999999998874 2456677
Q ss_pred eeccCcCCcch-----------------HHHHHhhcCCCCCccCC---c--------cchHHHHHHHHHHHHh-CCCCcE
Q 002090 700 MVPAESASIPY-----------------FDAIMLHMKSYDSPADG---K--------SSFQVEMSEIRSIVTA-TTSRSL 750 (968)
Q Consensus 700 ~vp~~~~~~~~-----------------~~~i~~~~~~~d~~~~~---~--------s~fs~~~~~~~~il~~-a~~~~L 750 (968)
+|||+...+.- +-++..+.+.+|.+... . -.+|+|++|...+++. ..+|++
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 99998765421 11333455555544322 2 2357788887776666 899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEE
Q 002090 751 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 810 (968)
Q Consensus 751 lLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~ 810 (968)
+++|||||.||...-..+...+.. ...+.|+|++-|+++++..++....+.++.+...
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 999999999999998888787777 3468999999999999988887766666666543
No 320
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.1e-15 Score=186.68 Aligned_cols=134 Identities=17% Similarity=0.134 Sum_probs=95.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh-----cC----ceeccCc-----CCcch--------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----LMVPAES-----ASIPY-------- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~-----~g----~~vp~~~-----~~~~~-------- 710 (968)
+++.+++++|| |++++|+||||||||||||+|+|+..... .| .++++.. ..+.+
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~ 91 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREY 91 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHH
Confidence 45679999999 89999999999999999999999852210 01 1333321 00000
Q ss_pred -------------------------------------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEE
Q 002090 711 -------------------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLV 751 (968)
Q Consensus 711 -------------------------------------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~Ll 751 (968)
+..++..+|.. +......+++|+|+++...+++. +.+|+++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lL 171 (638)
T PRK10636 92 RQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLL 171 (638)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEE
Confidence 11233444554 34566778999999998877766 8999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 752 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 752 LlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
||||||+|||+.....+ .+.+.+.+.+||++|||.+++.
T Consensus 172 LLDEPtn~LD~~~~~~L----~~~L~~~~~tviivsHd~~~l~ 210 (638)
T PRK10636 172 LLDEPTNHLDLDAVIWL----EKWLKSYQGTLILISHDRDFLD 210 (638)
T ss_pred EEcCCCCcCCHHHHHHH----HHHHHhCCCeEEEEeCCHHHHH
Confidence 99999999999775544 3344444679999999998764
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=1.3e-15 Score=183.76 Aligned_cols=140 Identities=12% Similarity=0.071 Sum_probs=97.3
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------hcCceeccCcCCc---chHHH
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASI---PYFDA 713 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------~~g~~vp~~~~~~---~~~~~ 713 (968)
++.+.+.+++.++++++| |++++|+||||||||||||+|+|+.... ....|+|+..... ...+.
T Consensus 9 nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~ 88 (552)
T TIGR03719 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVREN 88 (552)
T ss_pred eEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHH
Confidence 334444435679999998 8999999999999999999999986321 1123667654322 11121
Q ss_pred HH---------------------------------------------------------hhcCCCCCccCCccchHHHHH
Q 002090 714 IM---------------------------------------------------------LHMKSYDSPADGKSSFQVEMS 736 (968)
Q Consensus 714 i~---------------------------------------------------------~~~~~~d~~~~~~s~fs~~~~ 736 (968)
+. ..++.. ......+++|+|++
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqk 167 (552)
T TIGR03719 89 VEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGER 167 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHH
Confidence 11 111221 13455678999999
Q ss_pred HHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 737 EIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 737 ~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
++..+++. +.+|+++||||||+|||+.....+... + .+.+.++|++||+.+++.
T Consensus 168 qrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L---~~~~~tvIiisHd~~~~~ 222 (552)
T TIGR03719 168 RRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-L---QEYPGTVVAVTHDRYFLD 222 (552)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-H---HhCCCeEEEEeCCHHHHH
Confidence 97776665 889999999999999999887666333 3 333469999999998765
No 322
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.62 E-value=8.2e-15 Score=176.70 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=106.0
Q ss_pred CccccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceecc
Q 002090 649 SPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~ 703 (968)
.++.+.+++ ++.++++++| |+.++|+||||||||||+|+++|.... .+...++|+
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 345555654 4689999999 899999999999999999999998521 123346777
Q ss_pred CcCCcc--hHHH------------------------HHhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 704 ESASIP--YFDA------------------------IMLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 704 ~~~~~~--~~~~------------------------i~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
+...++ ..++ ....+ |....+..+..++|+|++|...++++ +.+|+++|||
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD 479 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 643321 1111 11122 22223344557899999997777666 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
|||+|+|+.....+... +..+...++|+|++||+.+..+.+++.
T Consensus 480 Epts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i 523 (544)
T TIGR01842 480 EPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKI 523 (544)
T ss_pred CCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEE
Confidence 99999999887777444 444544589999999999876655543
No 323
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.62 E-value=1.6e-15 Score=184.57 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=107.7
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 704 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~ 704 (968)
.++.+.+++++.+++++++ |+.++|+|+||||||||+|+++|+.. ..+...|+||+
T Consensus 338 ~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 417 (588)
T PRK13657 338 DDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQD 417 (588)
T ss_pred EEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecC
Confidence 3455566555679999999 89999999999999999999999852 12344578887
Q ss_pred cCCcc--hHHH---------------HHhhcC-----------CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIP--YFDA---------------IMLHMK-----------SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~--~~~~---------------i~~~~~-----------~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...+. ..++ .....+ ....+..+...+|+|++|...++++ +.+|+++||||
T Consensus 418 ~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDE 497 (588)
T PRK13657 418 AGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE 497 (588)
T ss_pred cccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 54321 1111 111111 1222334445799999987777665 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 802 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~ 802 (968)
||+++|+.....+...+.+ +. .++|+|++||+.+..+.+++.-.+
T Consensus 498 pts~LD~~t~~~i~~~l~~-~~-~~~tvIiitHr~~~~~~~D~ii~l 542 (588)
T PRK13657 498 ATSALDVETEAKVKAALDE-LM-KGRTTFIIAHRLSTVRNADRILVF 542 (588)
T ss_pred CccCCCHHHHHHHHHHHHH-Hh-cCCEEEEEEecHHHHHhCCEEEEE
Confidence 9999999888877555544 33 479999999999887776654333
No 324
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=170.89 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=100.7
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------h--cCceeccCcCCc----chH
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------I--CGLMVPAESASI----PYF 711 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~--~g~~vp~~~~~~----~~~ 711 (968)
.++.+.+.+++.++.+++| |+.++|+||||+|||||||+|+|..-.. + ...|++|+...+ ..+
T Consensus 325 ~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~ 404 (530)
T COG0488 325 ENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVL 404 (530)
T ss_pred eccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHH
Confidence 4444556566789999999 8999999999999999999997764211 1 012445443221 111
Q ss_pred ---------------HHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002090 712 ---------------DAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIE 774 (968)
Q Consensus 712 ---------------~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~ 774 (968)
...+.+++.. +.......++|+|.+....++.. +.+|.++||||||+.||.....++ .+
T Consensus 405 d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL----e~ 480 (530)
T COG0488 405 EELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EE 480 (530)
T ss_pred HHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH----HH
Confidence 2334445543 33456678899998876655554 789999999999999999774444 45
Q ss_pred HHHhcCcEEEEeccChhhhhc
Q 002090 775 TLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 775 ~l~~~g~~vl~~TH~~el~~~ 795 (968)
.|.+..-+||+||||..+.+.
T Consensus 481 aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 481 ALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HHHhCCCeEEEEeCCHHHHHh
Confidence 555667799999999999764
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.4e-15 Score=182.68 Aligned_cols=133 Identities=13% Similarity=0.112 Sum_probs=97.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------hcCceeccCcC--C---cchH--------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESA--S---IPYF-------- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------~~g~~vp~~~~--~---~~~~-------- 711 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... ....|+|+... . ....
T Consensus 331 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc
Confidence 4578999998 8999999999999999999999985221 11236666531 1 1111
Q ss_pred --------HHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 002090 712 --------DAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 781 (968)
Q Consensus 712 --------~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~ 781 (968)
..++..++.. +......+++|+|+++...+++. +.+|+++||||||+|||+.....+... ++.+ +.
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~---~~ 486 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMA-LEKY---EG 486 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH-HHHC---CC
Confidence 2334455553 34566778999999997776665 899999999999999999887777443 3333 46
Q ss_pred EEEEeccChhhhh
Q 002090 782 LGIVSTHLHGIFS 794 (968)
Q Consensus 782 ~vl~~TH~~el~~ 794 (968)
++|++||+.+++.
T Consensus 487 tvi~vsHd~~~~~ 499 (530)
T PRK15064 487 TLIFVSHDREFVS 499 (530)
T ss_pred EEEEEeCCHHHHH
Confidence 9999999998765
No 326
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.61 E-value=1.2e-14 Score=177.11 Aligned_cols=151 Identities=13% Similarity=0.189 Sum_probs=107.3
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAE 704 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~ 704 (968)
.++.+.+++++.+++|++| |+.++|+|+||||||||+|+++|+... .+...++||+
T Consensus 344 ~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~ 423 (592)
T PRK10790 344 DNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423 (592)
T ss_pred EEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccC
Confidence 3445555555679999999 899999999999999999999998621 2334578887
Q ss_pred cCCcch--H--------------HHHHhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 705 SASIPY--F--------------DAIMLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 705 ~~~~~~--~--------------~~i~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
...++- . .+.....+. ...+...-..+|+|++|+..++++ +.+|+++|||||
T Consensus 424 ~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEp 503 (592)
T PRK10790 424 PVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEA 503 (592)
T ss_pred CccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 654321 1 112222222 222333445799999997777665 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~ 801 (968)
|+++|+.....+...+.+ +.+ ++|+|++||+.+....+++.-.
T Consensus 504 ts~LD~~t~~~i~~~l~~-~~~-~~tvIivtHr~~~l~~~D~ii~ 546 (592)
T PRK10790 504 TANIDSGTEQAIQQALAA-VRE-HTTLVVIAHRLSTIVEADTILV 546 (592)
T ss_pred cccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEE
Confidence 999999887777555544 333 6899999999988776654433
No 327
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.61 E-value=2.3e-15 Score=183.28 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=103.4
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------hcCceeccCcCCcc--h
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP--Y 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------~~g~~vp~~~~~~~--~ 710 (968)
+++++++|++| |+.++|+||||||||||+++++|+. .. +...+|||+...+. .
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI 439 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL 439 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCH
Confidence 45789999999 8999999999999999999999986 21 22347787754321 1
Q ss_pred HH------------------------HHHhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 711 FD------------------------AIMLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 711 ~~------------------------~i~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
.+ .....+ |..-.+..+-..+|+|++|+..++++ +.+|+++||||||+++|+.
T Consensus 440 ~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 11 111122 22223444456799999998777766 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~ 801 (968)
....+...+.+ +. .++|+|++||.++....+++.-.
T Consensus 520 te~~i~~~l~~-~~-~~~TvIiItHrl~~i~~aD~Iiv 555 (588)
T PRK11174 520 SEQLVMQALNA-AS-RRQTTLMVTHQLEDLAQWDQIWV 555 (588)
T ss_pred HHHHHHHHHHH-Hh-CCCEEEEEecChHHHHhCCEEEE
Confidence 88888655544 33 47899999999988776665433
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.4e-15 Score=185.66 Aligned_cols=134 Identities=14% Similarity=0.139 Sum_probs=98.5
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------hcCceeccCcC-Cc----ch--------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESA-SI----PY-------- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------~~g~~vp~~~~-~~----~~-------- 710 (968)
+++.++++++| |++++|+||||||||||||+|+|+.... ....|+|+... .+ ..
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~ 402 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLA 402 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhC
Confidence 35679999998 8999999999999999999999986321 01235565421 00 01
Q ss_pred -------HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 002090 711 -------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 781 (968)
Q Consensus 711 -------~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~ 781 (968)
+..++..++.. +......+++|+|+++...++.. +.+|+++||||||+|||+.....+...+.+ + +.
T Consensus 403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~---~g 478 (638)
T PRK10636 403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID-F---EG 478 (638)
T ss_pred chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH-c---CC
Confidence 12344555664 34566788999999997776655 789999999999999999887777544444 3 34
Q ss_pred EEEEeccChhhhh
Q 002090 782 LGIVSTHLHGIFS 794 (968)
Q Consensus 782 ~vl~~TH~~el~~ 794 (968)
|||++|||.+++.
T Consensus 479 tvi~vSHd~~~~~ 491 (638)
T PRK10636 479 ALVVVSHDRHLLR 491 (638)
T ss_pred eEEEEeCCHHHHH
Confidence 9999999998764
No 329
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.61 E-value=1.1e-14 Score=180.41 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=109.0
Q ss_pred CccccccC-CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~-~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.|+ +++++++|++| |+.++|+||||||||||+|+++|+.. +.+...+|||
T Consensus 455 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 534 (686)
T TIGR03797 455 DRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534 (686)
T ss_pred EEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEcc
Confidence 45566664 35689999999 89999999999999999999999852 2234457888
Q ss_pred CcCCcc--hHH--------------HHHhhcCCC-----------CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 704 ESASIP--YFD--------------AIMLHMKSY-----------DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 704 ~~~~~~--~~~--------------~i~~~~~~~-----------d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
+...++ ..+ +.....+.. ..+..+-..+|+|++|+..++++ +.+|+++||||
T Consensus 535 ~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE 614 (686)
T TIGR03797 535 NGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614 (686)
T ss_pred CCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 764421 111 112222222 22334446799999997777766 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
||+++|+.....+...+.+ .++|+|++||.++....+++.-.+.++
T Consensus 615 pTS~LD~~te~~i~~~L~~----~~~T~IiItHr~~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 615 ATSALDNRTQAIVSESLER----LKVTRIVIAHRLSTIRNADRIYVLDAG 660 (686)
T ss_pred CccCCCHHHHHHHHHHHHH----hCCeEEEEecChHHHHcCCEEEEEECC
Confidence 9999999887776444433 368999999999888776655444333
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.61 E-value=2.1e-15 Score=185.03 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=100.5
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh---------cCceeccCcC-Ccc------
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESA-SIP------ 709 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~---------~g~~vp~~~~-~~~------ 709 (968)
++.+.+.+++.++++++| |++++|+||||||||||||+|+|+..... ...|+|+... .+.
T Consensus 513 ~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~ 592 (718)
T PLN03073 513 DASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPL 592 (718)
T ss_pred eeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHH
Confidence 344445445679999998 89999999999999999999999863211 1225555421 000
Q ss_pred -------------hHHHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002090 710 -------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIE 774 (968)
Q Consensus 710 -------------~~~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~ 774 (968)
.+..++..++..+ ......+.+|+|+++...+++. +.+|+++||||||+|||+.....+...
T Consensus 593 ~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~--- 669 (718)
T PLN03073 593 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQG--- 669 (718)
T ss_pred HHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH---
Confidence 1123445566653 3466778999999997776655 889999999999999999876665433
Q ss_pred HHHhcCcEEEEeccChhhhh
Q 002090 775 TLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 775 ~l~~~g~~vl~~TH~~el~~ 794 (968)
+.+.+.++|++||+.+++.
T Consensus 670 -L~~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 670 -LVLFQGGVLMVSHDEHLIS 688 (718)
T ss_pred -HHHcCCEEEEEECCHHHHH
Confidence 3332349999999998765
No 331
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.60 E-value=2e-15 Score=187.65 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=109.1
Q ss_pred CccccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.|.|++ ++.+++|++| |+.++|+||||||||||+|+++|+.. +.+...+|||
T Consensus 481 ~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 481 RNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred EEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 445566654 4679999999 89999999999999999999999852 1233457888
Q ss_pred CcCCcc--hHHH---------------HHhhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 704 ESASIP--YFDA---------------IMLHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 704 ~~~~~~--~~~~---------------i~~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
+...+. ..++ ..... |.+..+..+-..+|+|++|+..++++ +.+|+++|||
T Consensus 561 ~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLD 640 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640 (710)
T ss_pred CChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 754321 1111 11111 22223344456799999997777766 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
|||++||+.....+...+. +.++|+|++||.++....+++.-.+..+
T Consensus 641 EptS~LD~~te~~i~~~l~----~~~~T~IiitHrl~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 641 EATSALDPETEKIIDDNLR----RRGCTCIIVAHRLSTIRDCDEIIVLERG 687 (710)
T ss_pred CccccCCHHHHHHHHHHHH----hcCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 9999999988777755543 3589999999999888776654443333
No 332
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.60 E-value=2.2e-15 Score=182.79 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=104.2
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAE 704 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~ 704 (968)
.++.+.+++++.++++++| |+.++|+||||||||||+++++|+... .+...++|++
T Consensus 338 ~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 338 RHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred EEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 3445555555678999999 899999999999999999999998521 1233467776
Q ss_pred cCCcc--hHHHH---------------Hhhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIP--YFDAI---------------MLHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~--~~~~i---------------~~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...++ ..+++ .... |....+..+...+|+|++|...+++. +.+|+++||||
T Consensus 418 ~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDE 497 (585)
T TIGR01192 418 AGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE 497 (585)
T ss_pred CccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 43221 11111 1111 12222334456789999987776655 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
||+|+|+.....+...+ +.+. .+.|+|++||+.+....+++.
T Consensus 498 pts~LD~~~~~~i~~~l-~~~~-~~~tvI~isH~~~~~~~~d~i 539 (585)
T TIGR01192 498 ATSALDVETEARVKNAI-DALR-KNRTTFIIAHRLSTVRNADLV 539 (585)
T ss_pred CccCCCHHHHHHHHHHH-HHHh-CCCEEEEEEcChHHHHcCCEE
Confidence 99999998888875444 4443 489999999999887665543
No 333
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.60 E-value=3.7e-15 Score=155.65 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=87.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------------hcCceeccCcCCc------chHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------------ICGLMVPAESASI------PYFDAIM 715 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------------~~g~~vp~~~~~~------~~~~~i~ 715 (968)
| +++|+||||||||||+++|+++.-.. ....++|+..... ..++.++
T Consensus 23 g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l 101 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEII 101 (197)
T ss_pred C-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHH
Confidence 5 99999999999999999999885111 0112445533221 1233444
Q ss_pred hhcCCCCCccCCccchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 716 LHMKSYDSPADGKSSFQVEMSEIRSIVTAT-----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 716 ~~~~~~d~~~~~~s~fs~~~~~~~~il~~a-----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
.. .+........+|.|+++...+.... .+|+++|||||++|+|+.....+ ..+++.+.+ +.++|++||++
T Consensus 102 ~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l-~~~l~~~~~-~~tiIiitH~~ 176 (197)
T cd03278 102 EA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERF-ARLLKEFSK-ETQFIVITHRK 176 (197)
T ss_pred hC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHH-HHHHHHhcc-CCEEEEEECCH
Confidence 44 3334566778999999977766542 56799999999999999887777 445555554 68999999999
Q ss_pred hhhhccc
Q 002090 791 GIFSLPL 797 (968)
Q Consensus 791 el~~~~~ 797 (968)
++.+.++
T Consensus 177 ~~~~~~d 183 (197)
T cd03278 177 GTMEAAD 183 (197)
T ss_pred HHHhhcc
Confidence 8865433
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.60 E-value=5.2e-15 Score=181.25 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=111.7
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCcch
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIPY 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~~~ 710 (968)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 568999998 899999999999999999999999511 1223467765433221
Q ss_pred ---H---------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 711 ---F---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 711 ---~---------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
. ..++..++..+........+|.+++|...+++. +.+|+++|||||++|||+...
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 1 123445566666667778999999997776665 889999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeE
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 808 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~ 808 (968)
..+ ..+++.+++.|.++|++||+.++.+.+++...+.++.+.
T Consensus 181 ~~l-~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~ 222 (648)
T PRK10535 181 EEV-MAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222 (648)
T ss_pred HHH-HHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEE
Confidence 777 555566666799999999999988766555444454443
No 335
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.60 E-value=4.1e-15 Score=158.86 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=62.6
Q ss_pred hcCCCC-CccCCccchHHHHHHHHHHHHh-CCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 717 HMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 717 ~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~--~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
.++..+ ......+++|++++|...+++. +.+| +++||||||+|+|+.....+... +..+++.|.++|++||++++
T Consensus 123 ~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~-l~~~~~~g~tii~itH~~~~ 201 (226)
T cd03270 123 DVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIET-LKRLRDLGNTVLVVEHDEDT 201 (226)
T ss_pred HCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHhCCCEEEEEEeCHHH
Confidence 345544 3567788999999997777665 5666 69999999999999888888544 44556679999999999988
Q ss_pred hhcccc
Q 002090 793 FSLPLK 798 (968)
Q Consensus 793 ~~~~~~ 798 (968)
+..+++
T Consensus 202 ~~~~d~ 207 (226)
T cd03270 202 IRAADH 207 (226)
T ss_pred HHhCCE
Confidence 765443
No 336
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.60 E-value=2.4e-15 Score=182.26 Aligned_cols=149 Identities=17% Similarity=0.119 Sum_probs=107.2
Q ss_pred CccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.++++ +.+++|++| |+.++|+||||||||||+|+++|+.. +.+...+|||
T Consensus 342 ~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 421 (574)
T PRK11160 342 NNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421 (574)
T ss_pred EEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcc
Confidence 3455666543 579999999 89999999999999999999999851 1223457887
Q ss_pred CcCCcc-----------------hHHHHHhhcCCCCCcc----------CCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 704 ESASIP-----------------YFDAIMLHMKSYDSPA----------DGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 704 ~~~~~~-----------------~~~~i~~~~~~~d~~~----------~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
+...++ .+.+.....+..+.+. .+...+|+|++|+..+++. +.+|+++||||
T Consensus 422 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE 501 (574)
T PRK11160 422 RVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501 (574)
T ss_pred cchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 754321 1112233344443322 2456799999997777666 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
||+++|+.....+...+.+ +. .++|+|++||.++....+++.
T Consensus 502 ~ts~lD~~t~~~i~~~l~~-~~-~~~tviiitHr~~~~~~~d~i 543 (574)
T PRK11160 502 PTEGLDAETERQILELLAE-HA-QNKTVLMITHRLTGLEQFDRI 543 (574)
T ss_pred CcccCCHHHHHHHHHHHHH-Hc-CCCEEEEEecChhHHHhCCEE
Confidence 9999999888877555544 43 478999999999887665544
No 337
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.60 E-value=1.7e-14 Score=175.49 Aligned_cols=151 Identities=14% Similarity=0.093 Sum_probs=106.8
Q ss_pred CccccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.+++ ++++++++++ |+.++|+||||||||||+|+|+|+.. +.+...++||
T Consensus 345 ~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 424 (582)
T PRK11176 345 RNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424 (582)
T ss_pred EEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEcc
Confidence 345566654 3679999999 89999999999999999999999852 1233457888
Q ss_pred CcCCcch--HHHH----------------HhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 704 ESASIPY--FDAI----------------MLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 704 ~~~~~~~--~~~i----------------~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
+...++- .+++ ....+. .-.+..+-..+|+|++|...+++. ..+|+++||
T Consensus 425 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ilil 504 (582)
T PRK11176 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_pred CceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 7543211 1111 111121 111223335699999997777765 899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccc
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~ 801 (968)
||||+++|+.....+...+.+ +. .++|+|++||+.+....+++.-.
T Consensus 505 DEptsaLD~~t~~~i~~~l~~-~~-~~~tvI~VtHr~~~~~~~D~Ii~ 550 (582)
T PRK11176 505 DEATSALDTESERAIQAALDE-LQ-KNRTSLVIAHRLSTIEKADEILV 550 (582)
T ss_pred ECccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHhCCEEEE
Confidence 999999999888887655554 33 47999999999988777665433
No 338
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.60 E-value=4.4e-15 Score=179.21 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=109.8
Q ss_pred CccccccCCC----ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCce
Q 002090 649 SPYWFDAAEG----SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLM 700 (968)
Q Consensus 649 ~~~~~~~~~~----~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~ 700 (968)
.++.+.+.++ ++++++++| |+.++|+||||||||||+++++|+... .....+
T Consensus 341 ~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 420 (555)
T TIGR01194 341 KDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSA 420 (555)
T ss_pred EEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcE
Confidence 3455555432 369999999 899999999999999999999998521 122235
Q ss_pred eccCcCCcc--------------hHHHHHhhcCCCCCcc---CC---ccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002090 701 VPAESASIP--------------YFDAIMLHMKSYDSPA---DG---KSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRG 759 (968)
Q Consensus 701 vp~~~~~~~--------------~~~~i~~~~~~~d~~~---~~---~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~G 759 (968)
||++...+. ...+.....+..+.+. .+ ...+|+|++|+..+++. +.+|+++||||||++
T Consensus 421 v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~ 500 (555)
T TIGR01194 421 IFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAAD 500 (555)
T ss_pred EccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 666532110 1123444555554432 12 25799999997777665 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccc
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 802 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~ 802 (968)
+|+.....+...+++.++..++|+|++||+.+..+.+++.-.+
T Consensus 501 LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l 543 (555)
T TIGR01194 501 QDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKL 543 (555)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEE
Confidence 9998888887777766666789999999998877666554333
No 339
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=5.8e-15 Score=156.46 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=120.0
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCc--------CCcchHHHHHhhcCCCC-Ccc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES--------ASIPYFDAIMLHMKSYD-SPA 725 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~--------~~~~~~~~i~~~~~~~d-~~~ 725 (968)
..++++||| |++++|+|.|||||||+-|+|.++.-.. .|....... .....+.+++..+|... .+.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ 104 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY 104 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh
Confidence 378999999 8999999999999999999999886433 232222211 11233456777788655 456
Q ss_pred CCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccccc
Q 002090 726 DGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 804 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~ 804 (968)
+....||+|++|...|+++ +.+|+++++|||+|.||...++.+...+.+.-.+.|.+.+|+|||+..+.... +++..
T Consensus 105 ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is--dri~V 182 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS--DRIAV 182 (268)
T ss_pred cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc--ccEEE
Confidence 7788999999998887766 89999999999999999988888844444443456999999999999987533 34555
Q ss_pred ceeEEEeeCCceeeeeeeecCCCCCcHHHHH
Q 002090 805 KAMGTEYLDGQTVPTWKLVDGICRESLAFET 835 (968)
Q Consensus 805 ~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~ 835 (968)
+..+...+.+.....|. .+...|.-.+
T Consensus 183 My~G~iVE~g~~~~~~~----~p~HpYTk~L 209 (268)
T COG4608 183 MYLGKIVEIGPTEEVFS----NPLHPYTKAL 209 (268)
T ss_pred EecCceeEecCHHHHhh----CCCCHHHHHH
Confidence 55554444443333322 3344565444
No 340
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.2e-15 Score=170.61 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=115.1
Q ss_pred CCccccccCCCc-eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------hcCceec
Q 002090 648 LSPYWFDAAEGS-AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVP 702 (968)
Q Consensus 648 ~~~~~~~~~~~~-~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------~~g~~vp 702 (968)
+.++.|.|++.+ ++++|++| |+.++|+|++||||||++++++|..... +..++++
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~ 418 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLT 418 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhc
Confidence 455667777655 89999999 8999999999999999999999864211 1122233
Q ss_pred cCcCCc-----------------chHHHHHhhcCCC-----------CCccCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 703 AESASI-----------------PYFDAIMLHMKSY-----------DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 703 ~~~~~~-----------------~~~~~i~~~~~~~-----------d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
|....+ ..+-.++..+|.+ -.+..+-..||+|.+|+..+.+. .++.+++||
T Consensus 419 Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lL 498 (573)
T COG4987 419 QRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498 (573)
T ss_pred cchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEe
Confidence 322111 0011233333332 23445556889998887766665 789999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEe
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 811 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~ 811 (968)
||||.|||+.....+...+.+++. |+|+|++||..-..+.+++...+.+++...+.
T Consensus 499 DEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~G 554 (573)
T COG4987 499 DEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG 554 (573)
T ss_pred cCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeecC
Confidence 999999999999999888877764 78999999998887877777666666655443
No 341
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=1.5e-15 Score=151.25 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=102.1
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH---------------------hhhcCc-eeccCcCCc--
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------LGICGL-MVPAESASI-- 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~---------------------la~~g~-~vp~~~~~~-- 708 (968)
++-.++|++|| |++-+|+||||+||||+|..|+|-.- .|+.|. --+|.+..+
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 56789999999 89999999999999999999999751 233332 011111100
Q ss_pred ------------------------------chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 709 ------------------------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 709 ------------------------------~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
..+|.++..++..+......+.+|-|++|...|--. +++|.|+|+|||.
T Consensus 96 ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPv 175 (249)
T COG4674 96 LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175 (249)
T ss_pred ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCcc
Confidence 123455666677777777778888899998777544 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
+|+...+.... ..++..++. +++++++.||+++...
T Consensus 176 AGMTd~Et~~t-aeLl~~la~-~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 176 AGMTDAETEKT-AELLKSLAG-KHSILVVEHDMGFVRE 211 (249)
T ss_pred CCCcHHHHHHH-HHHHHHHhc-CceEEEEeccHHHHHH
Confidence 99999888887 455555654 6899999999999853
No 342
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.60 E-value=3.6e-15 Score=181.09 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=107.0
Q ss_pred ccccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccC
Q 002090 650 PYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 704 (968)
Q Consensus 650 ~~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~ 704 (968)
++.+.+++ ++++++++++ |+.++|+|+||||||||+|+++|+.. +.+..+|+||+
T Consensus 335 ~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 335 NVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred EEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 44455543 4679999999 89999999999999999999999952 12334578876
Q ss_pred cCCcc--h----------------HHHHHhhcCCC-----------CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 705 SASIP--Y----------------FDAIMLHMKSY-----------DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 705 ~~~~~--~----------------~~~i~~~~~~~-----------d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
...+. . +.+.....+.. ..+..+-..+|+|++|+..+++. +.+|+++|||
T Consensus 415 ~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD 494 (571)
T TIGR02203 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD 494 (571)
T ss_pred cccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 53321 0 11122222222 22333345799999998777765 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 802 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~ 802 (968)
|||+++|+.....+...+.+ +. .++|+|++||+.+....+++.-.+
T Consensus 495 Epts~LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l 540 (571)
T TIGR02203 495 EATSALDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVM 540 (571)
T ss_pred CccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEE
Confidence 99999999988888555543 43 478999999999887776654443
No 343
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.59 E-value=3.5e-15 Score=185.01 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=108.1
Q ss_pred CccccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.|.|++ ++++++|++| |+.++|+||||||||||+|+++|+.. +.+...+|||
T Consensus 467 ~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 467 RNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred EEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECC
Confidence 345566654 4679999999 89999999999999999999999852 1233457888
Q ss_pred CcCCcc--hHH---------------HHHhhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 704 ESASIP--YFD---------------AIMLHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 704 ~~~~~~--~~~---------------~i~~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
+...+. ..+ +..... |..-.+..+-..+|+|++|+..++++ +.+|+++|||
T Consensus 547 ~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred ChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 754321 111 111112 22222334456799999997777766 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 802 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~ 802 (968)
|||+++|+.....+...+.+ +. .++|+|++||.++....+++.-.+
T Consensus 627 E~Ts~LD~~te~~i~~~l~~-~~-~~~T~iiItHrl~~~~~~D~iivl 672 (694)
T TIGR03375 627 EPTSAMDNRSEERFKDRLKR-WL-AGKTLVLVTHRTSLLDLVDRIIVM 672 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHH-Hh-CCCEEEEEecCHHHHHhCCEEEEE
Confidence 99999999888888555544 43 379999999999887766654333
No 344
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.59 E-value=3.4e-15 Score=183.06 Aligned_cols=144 Identities=13% Similarity=0.122 Sum_probs=101.7
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh---------hcCceeccCcCCc--chH---
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASI--PYF--- 711 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la---------~~g~~vp~~~~~~--~~~--- 711 (968)
++.+.+++++.++++++| |++++|+||||||||||+|+|+|+.... ....++|++.... ...
T Consensus 456 nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni 535 (659)
T TIGR00954 456 NIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQI 535 (659)
T ss_pred eeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHH
Confidence 344444455689999999 8999999999999999999999985321 1124677764221 111
Q ss_pred -------------------HHHHhhcCCCCCccC---------CccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 712 -------------------DAIMLHMKSYDSPAD---------GKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 712 -------------------~~i~~~~~~~d~~~~---------~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
.+++..++..+.+.. ....+|+|++|...++++ +.+|+++||||||+|+|+
T Consensus 536 ~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~ 615 (659)
T TIGR00954 536 IYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615 (659)
T ss_pred hcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 123333444332222 236899999997777666 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.....+. +.+.+.|.|+|++||+.++...++
T Consensus 616 ~~~~~l~----~~l~~~~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 616 DVEGYMY----RLCREFGITLFSVSHRKSLWKYHE 646 (659)
T ss_pred HHHHHHH----HHHHHcCCEEEEEeCchHHHHhCC
Confidence 7765553 334445899999999999876544
No 345
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.59 E-value=3.2e-15 Score=180.28 Aligned_cols=133 Identities=13% Similarity=0.142 Sum_probs=97.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------h--cCceeccCcC-Cc---chH---------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------I--CGLMVPAESA-SI---PYF--------- 711 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~--~g~~vp~~~~-~~---~~~--------- 711 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... . ...|+|+... .. ...
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccc
Confidence 4679999999 8999999999999999999999985321 0 1236666531 11 111
Q ss_pred ----------HHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 002090 712 ----------DAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779 (968)
Q Consensus 712 ----------~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~ 779 (968)
..++..++..+ ......+++|+|+++...++.. +.+|+++||||||+|||+.....+. .++..+
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~--- 489 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE-EALLEF--- 489 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHC---
Confidence 13445556643 3466778999999997776655 8999999999999999998877774 444433
Q ss_pred CcEEEEeccChhhhh
Q 002090 780 GCLGIVSTHLHGIFS 794 (968)
Q Consensus 780 g~~vl~~TH~~el~~ 794 (968)
+.++|++||+.+++.
T Consensus 490 ~~~viivsHd~~~~~ 504 (552)
T TIGR03719 490 AGCAVVISHDRWFLD 504 (552)
T ss_pred CCeEEEEeCCHHHHH
Confidence 248999999998764
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.59 E-value=4.9e-15 Score=181.32 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=91.1
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh-----cC----ceeccCcC--Cc-ch----------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----LMVPAESA--SI-PY---------- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~-----~g----~~vp~~~~--~~-~~---------- 710 (968)
+++.++++++| |++++|+||||||||||||+|+|+..... .| .++|+... .. ..
T Consensus 14 ~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~ 93 (635)
T PRK11147 14 SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93 (635)
T ss_pred CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHH
Confidence 35679999998 89999999999999999999999853210 01 12232110 00 00
Q ss_pred ---------------------------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-
Q 002090 711 ---------------------------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA- 744 (968)
Q Consensus 711 ---------------------------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~- 744 (968)
+..++..++.. .....+++|+|+++...+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL 171 (635)
T PRK11147 94 QAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRAL 171 (635)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHH
Confidence 01122223332 245668899999997777666
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+.+|+++||||||+|||+.....+ ..++ .+.+.+||++|||.+++.
T Consensus 172 ~~~P~lLLLDEPt~~LD~~~~~~L-~~~L---~~~~~tvlivsHd~~~l~ 217 (635)
T PRK11147 172 VSNPDVLLLDEPTNHLDIETIEWL-EGFL---KTFQGSIIFISHDRSFIR 217 (635)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHH-HHHH---HhCCCEEEEEeCCHHHHH
Confidence 899999999999999999776655 3333 333469999999998764
No 347
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.58 E-value=4e-15 Score=175.11 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=96.5
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh------h---cCceeccCcCCcc---hH---------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------I---CGLMVPAESASIP---YF--------- 711 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la------~---~g~~vp~~~~~~~---~~--------- 711 (968)
+++.+++++++ |+.++|+|+||+|||||||+|+|..... . ...+++|+....+ .+
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 67899999998 8999999999999999999999986211 1 1224555432211 11
Q ss_pred ------------------------------------------HHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCC
Q 002090 712 ------------------------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSR 748 (968)
Q Consensus 712 ------------------------------------------~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~ 748 (968)
..++..+|..+. ....+++|+|.+....++++ ..+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~p 172 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEP 172 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCC
Confidence 122233444444 67788999999987777666 8999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 749 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 749 ~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+++||||||++||... + ..+-++|.+...++|++|||..+.+
T Consensus 173 DlLLLDEPTNHLD~~~---i-~WLe~~L~~~~gtviiVSHDR~FLd 214 (530)
T COG0488 173 DLLLLDEPTNHLDLES---I-EWLEDYLKRYPGTVIVVSHDRYFLD 214 (530)
T ss_pred CEEEEcCCCcccCHHH---H-HHHHHHHHhCCCcEEEEeCCHHHHH
Confidence 9999999999999955 2 4445566554449999999999865
No 348
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.58 E-value=4.9e-15 Score=183.65 Aligned_cols=154 Identities=13% Similarity=0.092 Sum_probs=107.3
Q ss_pred CccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceec
Q 002090 649 SPYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVP 702 (968)
Q Consensus 649 ~~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp 702 (968)
.++.+.|++ ++++++|++| |+.++|+|||||||||++|+|+|+.. +.+...+||
T Consensus 482 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 561 (711)
T TIGR00958 482 QDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVG 561 (711)
T ss_pred EEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEe
Confidence 345566654 4689999999 89999999999999999999999852 223345788
Q ss_pred cCcCCcc--hHH---------------HHHhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 703 AESASIP--YFD---------------AIMLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 703 ~~~~~~~--~~~---------------~i~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
|+...+. ..+ +.....+. +..+..+-..+|+|++|+..++++ ..+|+++||
T Consensus 562 Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILIL 641 (711)
T TIGR00958 562 QEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641 (711)
T ss_pred cCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8754321 111 11222222 222334446799999998777766 899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccce
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 806 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~ 806 (968)
||||+++|+.....+.. .....++|+|++||..+....+++.-.+.+++
T Consensus 642 DEpTSaLD~~te~~i~~----~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ 690 (711)
T TIGR00958 642 DEATSALDAECEQLLQE----SRSRASRTVLLIAHRLSTVERADQILVLKKGS 690 (711)
T ss_pred EccccccCHHHHHHHHH----hhccCCCeEEEEeccHHHHHhCCEEEEEECCE
Confidence 99999999977555533 22235789999999998877766554444443
No 349
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.58 E-value=5.1e-15 Score=183.95 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=108.6
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 704 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~ 704 (968)
.++.|.|.+++.+++|++| |+.++|+||||||||||+|+++|+.. +.+...+|||+
T Consensus 477 ~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred EEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecC
Confidence 3455666556789999999 89999999999999999999999852 12334578887
Q ss_pred cCCcch--HHH----------------HHhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 705 SASIPY--FDA----------------IMLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 705 ~~~~~~--~~~----------------i~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
...++- .++ .....+. +-.+..+-..+|+|++|...++++ +.+|+++|||
T Consensus 557 ~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLD 636 (708)
T TIGR01193 557 PYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD 636 (708)
T ss_pred ceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 543210 111 1111122 222334456799999998777766 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAA 803 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~ 803 (968)
|||+++|+.....+...+.+ + .++|+|++||..+....+++.-.+.
T Consensus 637 E~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~ 682 (708)
T TIGR01193 637 ESTSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLD 682 (708)
T ss_pred CccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEE
Confidence 99999999887777555554 3 4789999999998877766544433
No 350
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.58 E-value=4.8e-15 Score=178.84 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=97.9
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------h--cCceeccCc-CCc---chH--------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------I--CGLMVPAES-ASI---PYF-------- 711 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~--~g~~vp~~~-~~~---~~~-------- 711 (968)
+++.++++++| |++++|+||||||||||+|+|+|+.... . ...|+|+.. ... ...
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 414 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 414 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence 34679999999 8999999999999999999999986321 1 123667653 111 111
Q ss_pred -----------HHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 002090 712 -----------DAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 778 (968)
Q Consensus 712 -----------~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~ 778 (968)
..++..++..+ ......+++|+|+++...+++. +.+|+++||||||+|||+.....+.. ++..+
T Consensus 415 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~-- 491 (556)
T PRK11819 415 IIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEE-ALLEF-- 491 (556)
T ss_pred cccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHHhC--
Confidence 12344556543 3466778999999997776655 89999999999999999988777744 44433
Q ss_pred cCcEEEEeccChhhhh
Q 002090 779 IGCLGIVSTHLHGIFS 794 (968)
Q Consensus 779 ~g~~vl~~TH~~el~~ 794 (968)
.+ ++|++||+.+++.
T Consensus 492 ~~-tvi~vtHd~~~~~ 506 (556)
T PRK11819 492 PG-CAVVISHDRWFLD 506 (556)
T ss_pred CC-eEEEEECCHHHHH
Confidence 24 7999999998764
No 351
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.58 E-value=7.6e-15 Score=169.71 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=113.9
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc-----------------------eeccCcCC-c-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-----------------------MVPAESAS-I- 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~-----------------------~vp~~~~~-~- 708 (968)
...+.+|+|| |++++|+|++||||||+.|+|+|+... ..|. +++|+... +
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence 3578999999 899999999999999999999999733 1111 22222100 0
Q ss_pred -------------------------chHHHHHhhcCCCCC-ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 709 -------------------------PYFDAIMLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 709 -------------------------~~~~~i~~~~~~~d~-~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
..++.++..++...+ +.+....||+|++|...|+++ +.+|+++++|||++.||
T Consensus 382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLD 461 (539)
T COG1123 382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461 (539)
T ss_pred ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccC
Confidence 013455777777663 677788999999997777666 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEEeeCC
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG 814 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~ 814 (968)
+.....+...+.+.-.+.|.|.||+|||+..++.. ++++..++.+...+.|
T Consensus 462 vsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i--~drv~vm~~G~iVE~G 512 (539)
T COG1123 462 VSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI--ADRVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhh--CceEEEEECCeEEEeC
Confidence 99999997777776677899999999999987642 2344444444433333
No 352
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.57 E-value=8.4e-15 Score=178.00 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=106.9
Q ss_pred ccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceecc
Q 002090 650 PYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPA 703 (968)
Q Consensus 650 ~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~ 703 (968)
++.+.+++ ++.++++++| |+.++|+||||||||||+|+++|+... .+...++||
T Consensus 342 ~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 342 QVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred EEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 34455543 2679999999 899999999999999999999998621 123457787
Q ss_pred CcCCcc--hHHH---------------H---------Hhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 704 ESASIP--YFDA---------------I---------MLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 704 ~~~~~~--~~~~---------------i---------~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
+...++ ..++ . ...+ |....+..+...+|+|++|...++++ +.+|+++|||
T Consensus 422 ~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD 501 (576)
T TIGR02204 422 DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD 501 (576)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe
Confidence 654321 1111 1 1111 22223344556799999987777766 8899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
|||+++|+.....+...+ +.+. .++|+|++||+.+....+++.-.+.++
T Consensus 502 Epts~lD~~~~~~i~~~l-~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 502 EATSALDAESEQLVQQAL-ETLM-KGRTTLIIAHRLATVLKADRIVVMDQG 550 (576)
T ss_pred CcccccCHHHHHHHHHHH-HHHh-CCCEEEEEecchHHHHhCCEEEEEECC
Confidence 999999998877664444 4443 479999999999887766654444333
No 353
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.9e-14 Score=140.61 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=100.0
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------------h-hcCceec
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------------G-ICGLMVP 702 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------------a-~~g~~vp 702 (968)
++..-..++|| |++++|+|.+||||||||++|++-+.. . ..| ||-
T Consensus 17 g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG-~Vh 95 (258)
T COG4107 17 GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG-FVH 95 (258)
T ss_pred CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc-eee
Confidence 34556778888 899999999999999999999886411 0 011 222
Q ss_pred c---CcC--------Ccc------------h----HHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 703 A---ESA--------SIP------------Y----FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 703 ~---~~~--------~~~------------~----~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
+ +.- .++ . ...++.++.+. +.+.....+||++|+|...|+++ ++.|.|++|
T Consensus 96 QnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfM 175 (258)
T COG4107 96 QNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175 (258)
T ss_pred cCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEe
Confidence 1 110 010 0 01234444432 34556678999999999888877 899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcc
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
||||.|||..-.+.+...+-....+.+..++++|||+..+.+.
T Consensus 176 DEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHh
Confidence 9999999998888885555555567899999999999888753
No 354
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.57 E-value=8.2e-15 Score=181.63 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=108.8
Q ss_pred CccccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.|.+ ++.++++++| |+.++|+||||||||||+|+++|+.. +.+...+||+
T Consensus 459 ~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q 538 (694)
T TIGR01846 459 ENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ 538 (694)
T ss_pred EEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEcc
Confidence 344556643 4579999999 89999999999999999999999852 1233457887
Q ss_pred CcCCcch--HH---------------HHHhhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 704 ESASIPY--FD---------------AIMLHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 704 ~~~~~~~--~~---------------~i~~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
+...++. .+ +..... |.+..+..+...+|+|++|...++++ +.+|+++|||
T Consensus 539 ~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD 618 (694)
T TIGR01846 539 ENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD 618 (694)
T ss_pred CCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6533210 11 111111 22223344556899999997777666 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
|||+++|+.....+...+.+ +. .++|+|++||+.+....+++.-.+.++
T Consensus 619 Epts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 619 EATSALDYESEALIMRNMRE-IC-RGRTVIIIAHRLSTVRACDRIIVLEKG 667 (694)
T ss_pred CCCcCCCHHHHHHHHHHHHH-Hh-CCCEEEEEeCChHHHHhCCEEEEEeCC
Confidence 99999999888888555554 33 579999999999887766554433333
No 355
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.57 E-value=7.5e-15 Score=176.54 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=105.4
Q ss_pred CccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.++++ +++++++++ |+.++|+||||||||||+|+++|+.. +.+...+|||
T Consensus 324 ~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 324 SGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred EEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 3455666554 479999999 89999999999999999999999852 1223457777
Q ss_pred CcCCcc--h---------------HHHHHhhcCCCC-----------CccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 704 ESASIP--Y---------------FDAIMLHMKSYD-----------SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 704 ~~~~~~--~---------------~~~i~~~~~~~d-----------~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
+...++ . +.......+..+ .+..+...+|+|++|+..++++ +.+|+++|||
T Consensus 404 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD 483 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483 (529)
T ss_pred CCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 653321 1 111222222222 2233456799999998777766 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
|||+++|+.....+...+.+ +. .++|+|++||+++....++
T Consensus 484 E~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d 524 (529)
T TIGR02857 484 EPTAHLDAETEALVTEALRA-LA-QGRTVLLVTHRLALAERAD 524 (529)
T ss_pred CcccccCHHHHHHHHHHHHH-hc-CCCEEEEEecCHHHHHhCC
Confidence 99999999888888555544 33 5799999999998876554
No 356
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.57 E-value=7.2e-15 Score=178.00 Aligned_cols=147 Identities=15% Similarity=0.136 Sum_probs=102.6
Q ss_pred cccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCc
Q 002090 651 YWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAES 705 (968)
Q Consensus 651 ~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~ 705 (968)
+.+.+.+ ++.+++++++ |+.++|+||||||||||+++++|+... .+...++|++.
T Consensus 319 v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 319 RQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred EEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 3444543 4579999999 899999999999999999999998521 12234677764
Q ss_pred CCcc--hHH---------------HHHhhcCCC-----------CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 706 ASIP--YFD---------------AIMLHMKSY-----------DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 706 ~~~~--~~~---------------~i~~~~~~~-----------d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
..++ ..+ ......+.. ..+..+...+|+|++|+..++++ +.+|+++|||||
T Consensus 399 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 399 FLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred eeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 3321 111 111122222 12233445799999997776665 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
|+|+|+.....+...+.+ +. .++|+|++||+.+....+++.
T Consensus 479 ts~LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i 519 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEI 519 (569)
T ss_pred cccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEE
Confidence 999999888888555544 43 589999999999876655443
No 357
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.57 E-value=8.6e-15 Score=178.49 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=108.7
Q ss_pred CCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------hcCceeccCcCCcc--
Q 002090 656 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP-- 709 (968)
Q Consensus 656 ~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------~~g~~vp~~~~~~~-- 709 (968)
.+++.+++|+++ |++++|+|||||||||||++|+|..... +...|+|++...++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 346789999999 8999999999999999999999975211 11246676543221
Q ss_pred -------------------------hHHHHHhhcCCCCCccCC------ccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 710 -------------------------YFDAIMLHMKSYDSPADG------KSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 710 -------------------------~~~~i~~~~~~~d~~~~~------~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++.++..++..+..... ...+|+|+++...+... +.+|++++|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 123455555554432222 23589999887666555 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh--hhhhccccccccccceeEE
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNAAYKAMGT 809 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~--el~~~~~~~~~~~~~~~~~ 809 (968)
+|||+.....+. ..++.+++.|.|+|++||++ ++.++.++..-+.++++..
T Consensus 195 sgLD~~~~~~l~-~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 195 SGLDSFMAYSVV-QVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred cchhHHHHHHHH-HHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 999998888884 44555666799999999997 3566666655555554443
No 358
>PLN03073 ABC transporter F family; Provisional
Probab=99.56 E-value=8.2e-15 Score=179.83 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=96.7
Q ss_pred CCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--hhhcC--ceeccCcC--Ccch-------
Q 002090 648 LSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LGICG--LMVPAESA--SIPY------- 710 (968)
Q Consensus 648 ~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--la~~g--~~vp~~~~--~~~~------- 710 (968)
+.++.+.+. ++.++++++| |++++|+||||||||||||+|+|..+ ....| .+++++.. ....
T Consensus 180 i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~ 258 (718)
T PLN03073 180 MENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNT 258 (718)
T ss_pred EceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHh
Confidence 344555553 5679999999 89999999999999999999998531 11111 12222200 0000
Q ss_pred -----------------------------------------------------------------HHHHHhhcCCC-CCc
Q 002090 711 -----------------------------------------------------------------FDAIMLHMKSY-DSP 724 (968)
Q Consensus 711 -----------------------------------------------------------------~~~i~~~~~~~-d~~ 724 (968)
+..++..+|.. +..
T Consensus 259 ~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~ 338 (718)
T PLN03073 259 DIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQ 338 (718)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHH
Confidence 00111222222 123
Q ss_pred cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 725 ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 725 ~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
.....++|+|+++...+++. +.+|+++||||||+|||+.....+ .+.+.+.+.++|++||+.++.. .+++.
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l----~~~L~~~~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWL----ETYLLKWPKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH----HHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 45567899999998777766 889999999999999999775555 3334444789999999998764 34443
No 359
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.56 E-value=1.4e-14 Score=174.33 Aligned_cols=141 Identities=17% Similarity=0.167 Sum_probs=101.1
Q ss_pred CCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccC
Q 002090 648 LSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAE 704 (968)
Q Consensus 648 ~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~ 704 (968)
+.++.|.|++++.+++|++| |+.++|+||||||||||+|+++|+... .+...+|||+
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQD 416 (529)
T ss_pred EEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccC
Confidence 34566777665679999999 899999999999999999999998521 1234578887
Q ss_pred cCCcc--hHH---------------HHHhhcCCCC-----------CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIP--YFD---------------AIMLHMKSYD-----------SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~--~~~---------------~i~~~~~~~d-----------~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...++ ..+ +.....+..+ .+..+-..+|+|++|+..++++ ..+|+++||||
T Consensus 417 ~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE 496 (529)
T TIGR02868 417 AHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE 496 (529)
T ss_pred cccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 65331 111 1222222222 2223345799999997777665 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
||+++|+.....+...+.+ + ..++|+|++||.+
T Consensus 497 ~TSaLD~~te~~I~~~l~~-~-~~~~TvIiItHrl 529 (529)
T TIGR02868 497 PTEHLDAGTESELLEDLLA-A-LSGKTVVVITHHL 529 (529)
T ss_pred CcccCCHHHHHHHHHHHHH-h-cCCCEEEEEecCC
Confidence 9999999887777555553 3 3478999999963
No 360
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.55 E-value=8.6e-15 Score=179.18 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=94.8
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------hh--cCceeccCcC-C---cchHH-------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GI--CGLMVPAESA-S---IPYFD------- 712 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a~--~g~~vp~~~~-~---~~~~~------- 712 (968)
+++.++++++| |++++|+||||||||||||+|+|+... .. ...|+++... . ....+
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcc
Confidence 34679999998 899999999999999999999998521 10 1235665421 1 11122
Q ss_pred ------------HHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 002090 713 ------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 778 (968)
Q Consensus 713 ------------~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~ 778 (968)
.++..++.. +......+++|+|+++...+++. +.+|+++||||||+|||+.....+.. ++ .+
T Consensus 410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l---~~ 485 (635)
T PRK11147 410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEE-LL---DS 485 (635)
T ss_pred cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HH---Hh
Confidence 223334443 23455678899999997776665 78999999999999999987655533 33 33
Q ss_pred cCcEEEEeccChhhhh
Q 002090 779 IGCLGIVSTHLHGIFS 794 (968)
Q Consensus 779 ~g~~vl~~TH~~el~~ 794 (968)
.+.|+|++|||.+++.
T Consensus 486 ~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 486 YQGTVLLVSHDRQFVD 501 (635)
T ss_pred CCCeEEEEECCHHHHH
Confidence 3569999999998764
No 361
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=7.7e-15 Score=148.55 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=100.0
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcC--------------------ceeccCcC-----C
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG--------------------LMVPAESA-----S 707 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g--------------------~~vp~~~~-----~ 707 (968)
..+.+++++++ |+++.|+|.||||||||+++|+|-+.+...- .-|.|++. .
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 35788999988 8999999999999999999999986322110 01122110 0
Q ss_pred cch---------------------------HHHHHh--hcCCCCCccCCccchHHHHHHH-HHHHHhCCCCcEEEEeCCC
Q 002090 708 IPY---------------------------FDAIML--HMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEIC 757 (968)
Q Consensus 708 ~~~---------------------------~~~i~~--~~~~~d~~~~~~s~fs~~~~~~-~~il~~a~~~~LlLlDEp~ 757 (968)
+.+ +..-.. ..|.+..+......||+|++|. +.+++.+.+|++++|||-|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 000 111111 1255566667777899999995 5566679999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
+.|||.....+...-.+...+.+.|.+++||.++-+
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A 212 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA 212 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHH
Confidence 999999888887777777778899999999999875
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.55 E-value=1.8e-14 Score=188.15 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=102.5
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc---h-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~---~- 710 (968)
++.+++|+++ |++++|+|||||||||||++|+|.... .+...|++|.....+ .
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 3479999999 899999999999999999999997420 111235666432211 0
Q ss_pred -----------------------HHHHHhhcCCCCCccCC-----ccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 711 -----------------------FDAIMLHMKSYDSPADG-----KSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 711 -----------------------~~~i~~~~~~~d~~~~~-----~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
++.++..+++.+..... ...+|+|++|+..|+.. +.+|++++|||||+|||
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 22344445554322222 25799999997776655 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChh--hhhcccccccc
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNA 802 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e--l~~~~~~~~~~ 802 (968)
+.....+ ..+++.+++.|.|||++||+.+ +.+.+++.-.+
T Consensus 1052 ~~~a~~v-~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1052 ARAAAIV-MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred HHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 9887777 5566667778999999999986 34555544333
No 363
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.55 E-value=1.5e-14 Score=152.80 Aligned_cols=147 Identities=19% Similarity=0.226 Sum_probs=94.2
Q ss_pred eEEcCCCccccccCCCceeeeeEeeceEEEEEecCCCCcchHHHHHHhHH------Hh-hhcCceeccCcCCcc------
Q 002090 643 LKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS------LL-GICGLMVPAESASIP------ 709 (968)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~v~~~i~lg~~~~I~GpNGsGKSTllk~i~gl~------~l-a~~g~~vp~~~~~~~------ 709 (968)
+.+.++..+ ++..+++++++ ++++|+|||||||||+|++|..+. .. .+.| ++|+.....+
T Consensus 6 l~l~nfk~~-----~~~~~l~~~~~-~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 6 LVLENFKSY-----AGEQVIGPFHK-SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSCS 78 (212)
T ss_pred EEEECcccC-----CCCeeeccCCC-CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceEE
Confidence 444555432 45678888887 899999999999999999998431 01 1122 2222211100
Q ss_pred ---hHH-------------------------HHHhhcCCCCCccCCccchHHHHHHHHHHHHhC-----CCCcEEEEeCC
Q 002090 710 ---YFD-------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT-----TSRSLVLIDEI 756 (968)
Q Consensus 710 ---~~~-------------------------~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a-----~~~~LlLlDEp 756 (968)
.+. .+...++..+........+|.+|++...+..+. .+|+++++|||
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEP 158 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEI 158 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCC
Confidence 000 011112222223334567889999987776642 35799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
++|+|+.....+ +.+++.++ .+.++|++||+.++...+++
T Consensus 159 t~gLD~~~~~~l-~~~l~~~~-~~~~~iivs~~~~~~~~~d~ 198 (212)
T cd03274 159 DAALDFRNVSIV-ANYIKERT-KNAQFIVISLRNNMFELADR 198 (212)
T ss_pred CcCCCHHHHHHH-HHHHHHHc-CCCEEEEEECcHHHHHhCCE
Confidence 999999887777 55555565 46788999999887766554
No 364
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.55 E-value=1.4e-13 Score=154.68 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=109.6
Q ss_pred CCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCceeccCcCCcch-
Q 002090 656 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAESASIPY- 710 (968)
Q Consensus 656 ~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~vp~~~~~~~~- 710 (968)
..+++++++++| |+.++|+||+|||||||.|.+.|+. .+++...|.||+-..++-
T Consensus 346 g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 356799999999 8999999999999999999999985 244555688887544311
Q ss_pred -------H------------------HHHHhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 711 -------F------------------DAIMLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 711 -------~------------------~~i~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
| +++..++ |-+-.+..+-+++|+|++|...+.++ -.+|.||+||||-++||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 1 1111121 33334556668899999997766655 789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~ 801 (968)
..-.+++.+|.+ ++++|+++|++||-.......+..--
T Consensus 506 ~GE~AL~~Ai~~-~k~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 506 EGEAALAAAILA-AKARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred hHHHHHHHHHHH-HHHcCCEEEEEecCHHHHhhcceeee
Confidence 777777666555 67789999999999998877665433
No 365
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.53 E-value=1.4e-14 Score=182.27 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=119.6
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCcCCcc------
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP------ 709 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~~~~~------ 709 (968)
+.+++++ |++.++.|||||||||++|++.|.... .+...|.||..+..+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 7888988 799999999999999999999998521 122335666543221
Q ss_pred ------------------hHHHHHhhcCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 710 ------------------YFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 710 ------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~-~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
.++.+...++..+......+++|+|+++ +...++.+.+|++|+||||++|+||..+..+ |
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l-W 738 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL-W 738 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH-H
Confidence 1234455567777777778899999998 5556677999999999999999999666666 8
Q ss_pred HHHHHHHhcCcEEEEeccChhhhh-ccccccccccceeEEEeeCCcee
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDGQTV 817 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~~~~~~~~~~~ 817 (968)
.+++.+++.|..+|++||.+|.++ ++++...+.++++.+.....+++
T Consensus 739 ~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 739 DIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 888888887779999999999986 67777777788877765544443
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.53 E-value=3.6e-14 Score=186.00 Aligned_cols=141 Identities=18% Similarity=0.256 Sum_probs=101.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH---h----------------hhcCceeccCcCCcc-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---L----------------GICGLMVPAESASIP----- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~---l----------------a~~g~~vp~~~~~~~----- 709 (968)
++.+++|+++ |++++|+|||||||||||++|+|... . .+...||||+...++
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 4689999999 89999999999999999999999852 1 011236666532111
Q ss_pred ----------------------hHHHHHhhcCCCCCccCCcc----chHHHHHHHHHHHHh-CCCCc-EEEEeCCCCCCC
Q 002090 710 ----------------------YFDAIMLHMKSYDSPADGKS----SFQVEMSEIRSIVTA-TTSRS-LVLIDEICRGTE 761 (968)
Q Consensus 710 ----------------------~~~~i~~~~~~~d~~~~~~s----~fs~~~~~~~~il~~-a~~~~-LlLlDEp~~GlD 761 (968)
.+++++..++..+....... .+|+|++|+..|... +.+|+ ++||||||+|||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 11234445555443333333 699999997776655 88996 999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhh--hhccccc
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI--FSLPLKI 799 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el--~~~~~~~ 799 (968)
+.....+ ..+++.+++.|+|||++||+++. .+..++.
T Consensus 935 ~~~~~~i-~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~v 973 (1394)
T TIGR00956 935 SQTAWSI-CKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973 (1394)
T ss_pred HHHHHHH-HHHHHHHHHcCCEEEEEecCCCHHHHHhcCEE
Confidence 9887777 66666677779999999999874 2444443
No 367
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.5e-14 Score=149.88 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=108.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHh--------------hhcCc----------eeccCcCCc----------------
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLL--------------GICGL----------MVPAESASI---------------- 708 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~l--------------a~~g~----------~vp~~~~~~---------------- 708 (968)
.+++|-|++||||||++++|+|+.-. +..|. ||+|+...+
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 79999999999999999999999621 22233 444433322
Q ss_pred --chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCcEEE
Q 002090 709 --PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGI 784 (968)
Q Consensus 709 --~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~-~~g~~vl 784 (968)
..||++..-+|++.-+.+..+++|+|.+|...|-++ .+.|.|+|||||.+.||..-..++ .-.+|.|. +.+..++
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei-lpylERL~~e~~IPIl 183 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI-LPYLERLRDEINIPIL 183 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH-HHHHHHHHHhcCCCEE
Confidence 235677777888888889999999999998888766 899999999999999999887888 55556665 4689999
Q ss_pred EeccChh-hhhccccccccccceeEE
Q 002090 785 VSTHLHG-IFSLPLKIKNAAYKAMGT 809 (968)
Q Consensus 785 ~~TH~~e-l~~~~~~~~~~~~~~~~~ 809 (968)
++||.++ ++.++++..-+.++.+..
T Consensus 184 YVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 184 YVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred EEecCHHHHHhhhheEEEecCCeEEe
Confidence 9999875 556777766666666544
No 368
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.51 E-value=8.8e-14 Score=150.31 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=56.0
Q ss_pred CCccchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 726 DGKSSFQVEMSEIRSIVTAT-----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il~~a-----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
....++|+||++...+++.. .+|+++|+|||++|+|+.....+.. .++.+.+ +.++|++||..+....+++.
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~~~-~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKELSD-GAQFITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHhhCCEE
Confidence 45678999999977766653 3689999999999999988887744 4455554 78999999998877666544
No 369
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.51 E-value=5.5e-14 Score=170.42 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=112.8
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH---------------------HhhhcCceecc
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS---------------------LLGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~---------------------~la~~g~~vp~ 703 (968)
.++.|.+++++.+++|++| |+.++|+|||||||||+++.+.++. +..+++ +|||
T Consensus 332 ~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Q 410 (567)
T COG1132 332 ENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQ 410 (567)
T ss_pred EEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcc
Confidence 4566777777899999999 8999999999999999999999985 123334 7888
Q ss_pred CcCCcc--hHH------------H------------HHhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 704 ESASIP--YFD------------A------------IMLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 704 ~~~~~~--~~~------------~------------i~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
+...+. ..+ + ....+ |.+-.+..+-..+|+|++|+..++++ ..+|+++|||
T Consensus 411 d~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 764332 111 1 11222 22333444557899999998877776 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccce
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 806 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~ 806 (968)
|||+++|+.....+..++. .+. ++.|+|+++|.+.....+++.-.+.++.
T Consensus 491 EaTSalD~~tE~~I~~~l~-~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~ 540 (567)
T COG1132 491 EATSALDTETEALIQDALK-KLL-KGRTTLIIAHRLSTIKNADRIIVLDNGR 540 (567)
T ss_pred ccccccCHHhHHHHHHHHH-HHh-cCCEEEEEeccHhHHHhCCEEEEEECCE
Confidence 9999999988888866665 344 4579999999988777666554444444
No 370
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.50 E-value=2.9e-14 Score=161.07 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=106.9
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCC-----------------
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS----------------- 707 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~----------------- 707 (968)
.++.|.+.++..++++++| ++.++++||||+|||||||++.|.+.. ..|...|.....
T Consensus 393 ~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s 471 (614)
T KOG0927|consen 393 QNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHNKLPRYNQHLAEQLDLDKS 471 (614)
T ss_pred eccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccccchhhhhhhHhhcCcchh
Confidence 3455666666678888888 589999999999999999999997521 122222222111
Q ss_pred --------------cchHHHHHhhcCCC-CCccCCccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002090 708 --------------IPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEICRGTETAKGTCIAGS 771 (968)
Q Consensus 708 --------------~~~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~-~a~~~~LlLlDEp~~GlD~~~~~~i~~~ 771 (968)
...+..++.++|.. +......+++|+|++.+..... ....|.||||||||+|||...-.++
T Consensus 472 ~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~l--- 548 (614)
T KOG0927|consen 472 SLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDAL--- 548 (614)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHH---
Confidence 12234567778876 5566778999999998665544 4899999999999999999774444
Q ss_pred HHHHHHhcCcEEEEeccChhhhh-ccccccccccc
Q 002090 772 IIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 805 (968)
Q Consensus 772 ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~ 805 (968)
.+.+.+..-+||++|||..+.. .++....+.++
T Consensus 549 -aeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~ 582 (614)
T KOG0927|consen 549 -AEAINEFPGGVVLVSHDFRLISQVAEEIWVCENG 582 (614)
T ss_pred -HHHHhccCCceeeeechhhHHHHHHHHhHhhccC
Confidence 5555555678999999998764 44444444333
No 371
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=4.7e-14 Score=174.22 Aligned_cols=159 Identities=17% Similarity=0.196 Sum_probs=109.6
Q ss_pred CccccccCCC--ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH---------------------HhhhcCcee
Q 002090 649 SPYWFDAAEG--SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS---------------------LLGICGLMV 701 (968)
Q Consensus 649 ~~~~~~~~~~--~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~---------------------~la~~g~~v 701 (968)
++++|.|+.. ..++++++| |+.++|+|||||||||+++++.++. +..++| .|
T Consensus 354 ~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig-lV 432 (1228)
T KOG0055|consen 354 RNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG-LV 432 (1228)
T ss_pred EEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC-ee
Confidence 4566777654 489999999 8999999999999999999999985 233444 46
Q ss_pred ccCcCCcc--hHHHH------------H------------hhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 702 PAESASIP--YFDAI------------M------------LHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 702 p~~~~~~~--~~~~i------------~------------~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
.|++..+. ..++| . ..+ |.+-.+...-.++|+|++|+..|+++ +.+|++||
T Consensus 433 ~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILL 512 (1228)
T KOG0055|consen 433 SQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILL 512 (1228)
T ss_pred eechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEE
Confidence 56543221 11111 0 000 11112223334589999998777766 89999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEE
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 810 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~ 810 (968)
|||||++||+.. ..+.+..++... .|.|+|+++|.+...+.++....+.++.+...
T Consensus 513 LDEaTSaLD~~s-e~~Vq~ALd~~~-~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 513 LDEATSALDAES-ERVVQEALDKAS-KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred ecCcccccCHHH-HHHHHHHHHHhh-cCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 999999999965 444466666654 47899999999888777776655555555443
No 372
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=8.5e-14 Score=133.09 Aligned_cols=138 Identities=19% Similarity=0.153 Sum_probs=104.5
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-----------hcCceeccCcCCc-------------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------ICGLMVPAESASI------------- 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-----------~~g~~vp~~~~~~------------- 708 (968)
++...+-++++ |+++-|+||+|||||||+.-++|.+.-. +.--.+|+....+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 46677888888 8999999999999999999999985110 0001122221111
Q ss_pred --------------------chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 709 --------------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 709 --------------------~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
...+..+++++...-......++|++++....+++. ...|+++|||||+|.+|..-+..
T Consensus 93 sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~q 172 (213)
T COG4136 93 SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ 172 (213)
T ss_pred ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHH
Confidence 112345566666666666777899999877666665 78999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
....+...+...|..+|.+|||++-+.
T Consensus 173 fR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 173 FRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHhcCCCeEEEecccccCC
Confidence 988888889999999999999987765
No 373
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.50 E-value=7.5e-14 Score=183.27 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=60.4
Q ss_pred CCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhhccccccccc
Q 002090 726 DGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAA 803 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~~~~~~ 803 (968)
.....+|+|++|+..|+++ +.+|+++||||||++||+.....+ ...++.+.+ .|.|+|++||+++..+.+++.-.+.
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i-~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~ 653 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV-QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLS 653 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEe
Confidence 3456799999998777766 899999999999999999887777 455555543 6899999999998877665543333
Q ss_pred c
Q 002090 804 Y 804 (968)
Q Consensus 804 ~ 804 (968)
.
T Consensus 654 ~ 654 (1466)
T PTZ00265 654 N 654 (1466)
T ss_pred C
Confidence 3
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.48 E-value=8.6e-14 Score=147.38 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=83.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh-----------hhc---------CceeccCcCC---------cch--HHH-HH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL-----------GIC---------GLMVPAESAS---------IPY--FDA-IM 715 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l-----------a~~---------g~~vp~~~~~---------~~~--~~~-i~ 715 (968)
|++++|+|||||||||+|++|++.+.- ... ..++++.... +.. +.+ +.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~ 107 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVL 107 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhh
Confidence 469999999999999999999854210 000 0011111110 000 111 11
Q ss_pred hh-cCCCCCccCCccchHHHHHHHHHHHHh-C----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 002090 716 LH-MKSYDSPADGKSSFQVEMSEIRSIVTA-T----------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 783 (968)
Q Consensus 716 ~~-~~~~d~~~~~~s~fs~~~~~~~~il~~-a----------~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~v 783 (968)
.. .+..+.+.....++|.++++...+..+ + .+|+++|||||++|+|+.....+ ..+++.+++.+.|+
T Consensus 108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~-~~~l~~~~~~~~ti 186 (213)
T cd03279 108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAV-ATALELIRTENRMV 186 (213)
T ss_pred hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhCCCEE
Confidence 11 123344456677899999987766554 3 26799999999999999887777 55556666668999
Q ss_pred EEeccChhhhhcc
Q 002090 784 IVSTHLHGIFSLP 796 (968)
Q Consensus 784 l~~TH~~el~~~~ 796 (968)
|++||++++....
T Consensus 187 i~itH~~~~~~~~ 199 (213)
T cd03279 187 GVISHVEELKERI 199 (213)
T ss_pred EEEECchHHHHhh
Confidence 9999999887543
No 375
>PTZ00243 ABC transporter; Provisional
Probab=99.48 E-value=1.2e-13 Score=182.80 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=103.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------hhcCceeccCcCCcc--hHHH----------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GICGLMVPAESASIP--YFDA---------- 713 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a~~g~~vp~~~~~~~--~~~~---------- 713 (968)
+++.++++++| |++++|+|||||||||||++|+|.... .....|+||+...+. ..++
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 35679999998 899999999999999999999998632 122347777643221 1111
Q ss_pred ----H---------Hhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 002090 714 ----I---------MLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777 (968)
Q Consensus 714 ----i---------~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~ 777 (968)
. +..+ |....+.....++|+|++|+..++++ +.+|+++|||||+++||+..+..+...++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 1 1111 33333455667899999998777666 899999999999999999888888665544333
Q ss_pred hcCcEEEEeccChhhhhccccc
Q 002090 778 NIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 778 ~~g~~vl~~TH~~el~~~~~~~ 799 (968)
.|+|+|++||+++++..+++.
T Consensus 831 -~~~TvIlvTH~~~~~~~ad~i 851 (1560)
T PTZ00243 831 -AGKTRVLATHQVHVVPRADYV 851 (1560)
T ss_pred -CCCEEEEEeCCHHHHHhCCEE
Confidence 489999999999987765443
No 376
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=3.7e-13 Score=145.80 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=64.6
Q ss_pred hhcCCCC-CccCCccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 716 LHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 716 ~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~---~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
..+++.. .+.+..+++|++++|...+++. +. +|+++||||||+|||+.+...+ ..+++.+.+.|.|+|++||++
T Consensus 154 ~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l-~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 154 CDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKL-LEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred HHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCH
Confidence 3556655 4677788999999998777665 43 3799999999999999988888 555666777799999999999
Q ss_pred hhhhccc
Q 002090 791 GIFSLPL 797 (968)
Q Consensus 791 el~~~~~ 797 (968)
++...++
T Consensus 233 ~~i~~aD 239 (261)
T cd03271 233 DVIKCAD 239 (261)
T ss_pred HHHHhCC
Confidence 9876544
No 377
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=5.9e-14 Score=136.87 Aligned_cols=134 Identities=21% Similarity=0.255 Sum_probs=99.8
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------hhcCc---------------------ee------
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GICGL---------------------MV------ 701 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a~~g~---------------------~v------ 701 (968)
+|+++++| |+++++-||+|+||||+||++-+.... .+.|. ||
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 68899998 899999999999999999999887421 11111 11
Q ss_pred -ccCcCC-----------c------chHHHHHhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 702 -PAESAS-----------I------PYFDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 702 -p~~~~~-----------~------~~~~~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
|.-.+. + .....++.+++..+.+ ....+|||+|.+|..+|.+. +.+-.++||||||+.||
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence 111100 0 0112466777776655 45678999999999998876 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
...+..+ ..++..-+.+|+.+|=+-||.+.-+
T Consensus 185 a~Nr~vV-veli~e~Ka~GaAlvGIFHDeevre 216 (235)
T COG4778 185 ATNRAVV-VELIREAKARGAALVGIFHDEEVRE 216 (235)
T ss_pred ccchHHH-HHHHHHHHhcCceEEEeeccHHHHH
Confidence 9887777 4555556778999999999988754
No 378
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.46 E-value=1.5e-13 Score=181.78 Aligned_cols=147 Identities=20% Similarity=0.130 Sum_probs=105.1
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh-------cCceeccCcCCcc--hHHHH-----------
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASIP--YFDAI----------- 714 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~-------~g~~vp~~~~~~~--~~~~i----------- 714 (968)
+++++|++| |++++|+|||||||||||++|+|...... ...|+|++...++ ..++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 568999998 89999999999999999999999863221 1246777643321 11111
Q ss_pred ---Hh---------hcCCCC--CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 002090 715 ---ML---------HMKSYD--SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779 (968)
Q Consensus 715 ---~~---------~~~~~d--~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~ 779 (968)
.. .+...+ .+.....++|+|++|+..++++ +.+|+++|||||++|+|+..+..+...++..+. +
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~ 597 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-S 597 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c
Confidence 11 111111 2334457899999998777766 899999999999999999999998766555554 4
Q ss_pred CcEEEEeccChhhhhccccccccccce
Q 002090 780 GCLGIVSTHLHGIFSLPLKIKNAAYKA 806 (968)
Q Consensus 780 g~~vl~~TH~~el~~~~~~~~~~~~~~ 806 (968)
|+|+|++||+++....+++.-.+.++.
T Consensus 598 ~~tvilvtH~~~~~~~ad~ii~l~~g~ 624 (1490)
T TIGR01271 598 NKTRILVTSKLEHLKKADKILLLHEGV 624 (1490)
T ss_pred CCeEEEEeCChHHHHhCCEEEEEECCE
Confidence 899999999998877665544444443
No 379
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.45 E-value=2.4e-13 Score=178.32 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=101.2
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH----------------h---h----hcCceeccCcCCcch
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------L---G----ICGLMVPAESASIPY 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~----------------l---a----~~g~~vp~~~~~~~~ 710 (968)
++.+++|+++ |++++|+||||||||||||+|+|... + . +...|++++...++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 3568888888 89999999999999999999999730 0 0 112355554221110
Q ss_pred --------------------------------HHHHHhhcCCCCCccC-----CccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 711 --------------------------------FDAIMLHMKSYDSPAD-----GKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 711 --------------------------------~~~i~~~~~~~d~~~~-----~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
.+.++..+++.+.... ....+|+|++|+..|+.. +.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 1223445565543322 235689999987777655 89999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccCh--hhhhccccccccccc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH--GIFSLPLKIKNAAYK 805 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~--el~~~~~~~~~~~~~ 805 (968)
+||||+|||+.....+. .+++.+.+ .|.|+|++||+. ++.++.++.-.+..+
T Consensus 233 lDEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G 287 (1394)
T TIGR00956 233 WDNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEG 287 (1394)
T ss_pred EeCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCC
Confidence 99999999999888884 55555654 589999999985 354555544333333
No 380
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.44 E-value=2.8e-13 Score=178.01 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=108.1
Q ss_pred CCccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------------
Q 002090 648 LSPYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------------- 695 (968)
Q Consensus 648 ~~~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------------------------- 695 (968)
+.++.|.|++ +.+|+++++| |+.++|+||+||||||++++|.++.-..
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 3466777763 3579999999 8999999999999999999999986531
Q ss_pred ---------------------------hc---------------------CceeccCcCCcc--hHHH------------
Q 002090 696 ---------------------------IC---------------------GLMVPAESASIP--YFDA------------ 713 (968)
Q Consensus 696 ---------------------------~~---------------------g~~vp~~~~~~~--~~~~------------ 713 (968)
.. ..+|||+...+. +.++
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ee 1327 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRED 1327 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHH
Confidence 11 236777654331 1111
Q ss_pred ---HHhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 002090 714 ---IMLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLD- 777 (968)
Q Consensus 714 ---i~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~- 777 (968)
.....++ .-.+..+-..+|+|++|+..|+++ +.+|+++|||||||+||+.....+..++ +.+.
T Consensus 1328 I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L-~~~~~ 1406 (1466)
T PTZ00265 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI-VDIKD 1406 (1466)
T ss_pred HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHHhc
Confidence 1111121 222233446799999998777766 8999999999999999998777764444 4444
Q ss_pred hcCcEEEEeccChhhhhcccccccc
Q 002090 778 NIGCLGIVSTHLHGIFSLPLKIKNA 802 (968)
Q Consensus 778 ~~g~~vl~~TH~~el~~~~~~~~~~ 802 (968)
..+.|+|++||.+...+.++..-.+
T Consensus 1407 ~~~~TvIiIaHRlsti~~aD~Ivvl 1431 (1466)
T PTZ00265 1407 KADKTIITIAHRIASIKRSDKIVVF 1431 (1466)
T ss_pred cCCCEEEEEechHHHHHhCCEEEEE
Confidence 3589999999999887776654433
No 381
>PLN03140 ABC transporter G family member; Provisional
Probab=99.44 E-value=2e-13 Score=178.52 Aligned_cols=150 Identities=12% Similarity=0.076 Sum_probs=102.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------hcCceeccCcCCcch---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIPY--- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------~~g~~vp~~~~~~~~--- 710 (968)
++.+++|+++ |++++|+||||||||||||+|+|..... +...|++++...++.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4578999998 8999999999999999999999985211 112355554221110
Q ss_pred -------------------------------------------------------HHHHHhhcCCCCCc-----cCCccc
Q 002090 711 -------------------------------------------------------FDAIMLHMKSYDSP-----ADGKSS 730 (968)
Q Consensus 711 -------------------------------------------------------~~~i~~~~~~~d~~-----~~~~s~ 730 (968)
.+.++..+|+.+.. ......
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 12233344543321 223457
Q ss_pred hHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh--hhhhcccccccccccee
Q 002090 731 FQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNAAYKAM 807 (968)
Q Consensus 731 fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~--el~~~~~~~~~~~~~~~ 807 (968)
+|+|++++..+... +.+|+++++||||+|||+.....+...+.+..+..|.|+|++||+. +..+++++...+..+++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 89999987776655 8999999999999999999988885444443344689999999985 55566665444334433
No 382
>PLN03232 ABC transporter C family member; Provisional
Probab=99.43 E-value=3.5e-13 Score=178.44 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=109.0
Q ss_pred CccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.|.++ +.|++|++| |+.++|+||+|||||||++++.++.. +.+...+|||
T Consensus 1238 ~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQ 1317 (1495)
T PLN03232 1238 EDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ 1317 (1495)
T ss_pred EEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECC
Confidence 4556666443 679999999 89999999999999999999999851 2233457888
Q ss_pred CcCCcch----------------HHHHHhhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 704 ESASIPY----------------FDAIMLHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 704 ~~~~~~~----------------~~~i~~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
+...++- +.+..... |.+..+..+-+.+|+|++|+..++++ +.+|+++||||
T Consensus 1318 dp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDE 1397 (1495)
T PLN03232 1318 SPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE 1397 (1495)
T ss_pred CCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7643310 01112222 22223344556899999998777766 78999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
||+++|+.....| ...++... .++|+|++||.++....+++.-.+..+
T Consensus 1398 ATSaLD~~Te~~I-q~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G 1445 (1495)
T PLN03232 1398 ATASVDVRTDSLI-QRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSG 1445 (1495)
T ss_pred CcccCCHHHHHHH-HHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 9999999776666 44444332 479999999999887665544333333
No 383
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.6e-13 Score=148.53 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=94.9
Q ss_pred CCCccccccCCCceeeeeEeec----eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCc-------CCcchHHHH-
Q 002090 647 GLSPYWFDAAEGSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-------ASIPYFDAI- 714 (968)
Q Consensus 647 ~~~~~~~~~~~~~~v~~~i~lg----~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~-------~~~~~~~~i- 714 (968)
|+|.+.|.|++.++.+..++|| ..++|+||||.||||||+++.|-+ -|.+. -.+++||+-
T Consensus 588 GlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl--------~P~~GE~RKnhrL~iG~FdQh~ 659 (807)
T KOG0066|consen 588 GLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL--------DPNDGELRKNHRLRIGWFDQHA 659 (807)
T ss_pred ecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC--------CCCcchhhccceeeeechhhhh
Confidence 8999999999999999999884 789999999999999999996643 33221 123333321
Q ss_pred ----------------------------HhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 715 ----------------------------MLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 715 ----------------------------~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
+-.+|+.... ......+|+|++....+... +..|+++||||||++||...
T Consensus 660 ~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIES 739 (807)
T KOG0066|consen 660 NEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIES 739 (807)
T ss_pred HHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhh
Confidence 1122221110 11223567787776655554 78999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
-.+++.+|-+ .+-.||++|||..+..
T Consensus 740 IDALaEAIne----y~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 740 IDALAEAINE----YNGGVIMVSHDERLIV 765 (807)
T ss_pred HHHHHHHHHh----ccCcEEEEecccceee
Confidence 6666555554 4667999999987753
No 384
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.42 E-value=9.1e-13 Score=137.81 Aligned_cols=133 Identities=9% Similarity=0.080 Sum_probs=85.8
Q ss_pred eEee-ceEEEEEecCCCCcchHHHHHHhHHHhh--------------hcCc------eeccCcCC----cchH--HHHHh
Q 002090 664 TVDM-QSLFLLTGPNGGGKSSLLRSICAASLLG--------------ICGL------MVPAESAS----IPYF--DAIML 716 (968)
Q Consensus 664 ~i~l-g~~~~I~GpNGsGKSTllk~i~gl~~la--------------~~g~------~vp~~~~~----~~~~--~~i~~ 716 (968)
+++| ..+.+|+||||+||||+|.+|.....-. +.|. .++..... .... +.+..
T Consensus 16 ~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 95 (198)
T cd03276 16 QIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARS 95 (198)
T ss_pred EEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHH
Confidence 3455 3578999999999999999997542100 0010 01111000 0001 12222
Q ss_pred hcCCCCCccCCccchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEeccC
Q 002090 717 HMKSYDSPADGKSSFQVEMSEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN--IGCLGIVSTHL 789 (968)
Q Consensus 717 ~~~~~d~~~~~~s~fs~~~~~~~~il~~-----a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~--~g~~vl~~TH~ 789 (968)
.+...+.......++|.++++...+... +.+|+++|||||++|+|+.....+...+.+...+ .+.++|++||+
T Consensus 96 ~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~ 175 (198)
T cd03276 96 FLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD 175 (198)
T ss_pred HhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 2222444566778999999997766543 4899999999999999998888886656665444 24689999999
Q ss_pred hhhhhcc
Q 002090 790 HGIFSLP 796 (968)
Q Consensus 790 ~el~~~~ 796 (968)
++.+...
T Consensus 176 ~~~i~~~ 182 (198)
T cd03276 176 ISGLASS 182 (198)
T ss_pred ccccccc
Confidence 9876543
No 385
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.42 E-value=1.1e-13 Score=135.45 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=95.5
Q ss_pred eceEEEEEecCCCCcchHHHHHHhHH--------------------------HhhhcCc-------------eeccCcCC
Q 002090 667 MQSLFLLTGPNGGGKSSLLRSICAAS--------------------------LLGICGL-------------MVPAESAS 707 (968)
Q Consensus 667 lg~~~~I~GpNGsGKSTllk~i~gl~--------------------------~la~~g~-------------~vp~~~~~ 707 (968)
-|+++-++||||+|||||+-.++|++ +++|.-. ++|+ ...
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~-~~~ 102 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD-KTR 102 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch-HHH
Confidence 38999999999999999999999985 1222111 1222 112
Q ss_pred cchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh------C--CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 002090 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA------T--TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779 (968)
Q Consensus 708 ~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~------a--~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~ 779 (968)
-..++.|...++..|.+.+..+.+|+|.-|...+.+. . ....|+|+|||.+++|.....++ ..+++++...
T Consensus 103 a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drll~~~c~~ 181 (248)
T COG4138 103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRLLSALCQQ 181 (248)
T ss_pred HHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHHHHHHHhC
Confidence 2344567777888999999999999988887765544 1 23479999999999999776666 8999999999
Q ss_pred CcEEEEeccChhhh
Q 002090 780 GCLGIVSTHLHGIF 793 (968)
Q Consensus 780 g~~vl~~TH~~el~ 793 (968)
|.+||+++||++-.
T Consensus 182 G~~vims~HDLNhT 195 (248)
T COG4138 182 GLAIVMSSHDLNHT 195 (248)
T ss_pred CcEEEEeccchhhH
Confidence 99999999987653
No 386
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.42 E-value=3.4e-13 Score=141.69 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=82.7
Q ss_pred eeEee-ceEEEEEecCCCCcchHHHHHHhHH----HhhhcC-----------------ceeccCc--CCcchHH--HHHh
Q 002090 663 NTVDM-QSLFLLTGPNGGGKSSLLRSICAAS----LLGICG-----------------LMVPAES--ASIPYFD--AIML 716 (968)
Q Consensus 663 ~~i~l-g~~~~I~GpNGsGKSTllk~i~gl~----~la~~g-----------------~~vp~~~--~~~~~~~--~i~~ 716 (968)
.+++| ..+++|+||||+|||||+++|.... .....+ .++++.. ..+.... .++.
T Consensus 16 ~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 16 SEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred eEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 34566 3499999999999999999996443 111100 0111111 0000000 1222
Q ss_pred hc--CC----CCCccCCccchHHHHHHHH------HHH-HhCCCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHHhc-Cc
Q 002090 717 HM--KS----YDSPADGKSSFQVEMSEIR------SIV-TATTSRSLVLIDEICRGTETAKGT-CIAGSIIETLDNI-GC 781 (968)
Q Consensus 717 ~~--~~----~d~~~~~~s~fs~~~~~~~------~il-~~a~~~~LlLlDEp~~GlD~~~~~-~i~~~ll~~l~~~-g~ 781 (968)
.+ .. ...+......+|.|+++.. .++ +.+.+|+++|+|||++++|+.... .+ ..++..+++. +.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l-~~~l~~~~~~~~~ 174 (204)
T cd03240 96 NVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL-AEIIEERKSQKNF 174 (204)
T ss_pred ceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH-HHHHHHHHhccCC
Confidence 21 10 1122345678888998852 222 337899999999999999998877 66 4555555554 88
Q ss_pred EEEEeccChhhhhccc
Q 002090 782 LGIVSTHLHGIFSLPL 797 (968)
Q Consensus 782 ~vl~~TH~~el~~~~~ 797 (968)
++|++||++++...++
T Consensus 175 ~iiiitH~~~~~~~~d 190 (204)
T cd03240 175 QLIVITHDEELVDAAD 190 (204)
T ss_pred EEEEEEecHHHHhhCC
Confidence 9999999998866544
No 387
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.42 E-value=3.5e-13 Score=178.76 Aligned_cols=149 Identities=17% Similarity=0.098 Sum_probs=105.3
Q ss_pred cccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcCCcc--hHH----
Q 002090 651 YWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASIP--YFD---- 712 (968)
Q Consensus 651 ~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~~~~--~~~---- 712 (968)
+.+.+.+ .+++++|++| |++++|+||||||||||+++|+|..... ....|+||+...++ ..+
T Consensus 642 ~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~ 721 (1522)
T TIGR00957 642 ATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILF 721 (1522)
T ss_pred eEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhc
Confidence 3344443 3579999999 8999999999999999999999986321 12247787643221 111
Q ss_pred ----------HHHhh------c-----CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 713 ----------AIMLH------M-----KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 713 ----------~i~~~------~-----~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
++... + |....+.....++|+|++|+..++++ ..+|+++|||||++++|+.....+..
T Consensus 722 g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~ 801 (1522)
T TIGR00957 722 GKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 801 (1522)
T ss_pred CCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 11111 1 11112344567899999998877766 89999999999999999999888877
Q ss_pred HHHHHH-HhcCcEEEEeccChhhhhccccc
Q 002090 771 SIIETL-DNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 771 ~ll~~l-~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
.+.+.. ..+++|+|++||+.+....+++.
T Consensus 802 ~l~~~~~~~~~~tvIlvTH~~~~l~~~D~i 831 (1522)
T TIGR00957 802 HVIGPEGVLKNKTRILVTHGISYLPQVDVI 831 (1522)
T ss_pred HHhhhhhhhcCCEEEEEeCChhhhhhCCEE
Confidence 776421 13478999999999887665543
No 388
>PLN03232 ABC transporter C family member; Provisional
Probab=99.41 E-value=2.8e-12 Score=170.06 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=108.2
Q ss_pred ccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh--------cCceeccCcCCcc--h---
Q 002090 650 PYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAESASIP--Y--- 710 (968)
Q Consensus 650 ~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~--------~g~~vp~~~~~~~--~--- 710 (968)
+..+.+++ ++++++|++| |+.++|+||+|||||||+++|+|...... ...||||+...+. .
T Consensus 619 ~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreN 698 (1495)
T PLN03232 619 NGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVREN 698 (1495)
T ss_pred eeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHH
Confidence 34455543 4679999999 89999999999999999999999864322 2347888754321 1
Q ss_pred -----------HHHHHhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 711 -----------FDAIMLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 711 -----------~~~i~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
+.++....+. .-.+..+-.++|+|++|+..++++ ..+|+++||||||+++|+..+..
T Consensus 699 I~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~ 778 (1495)
T PLN03232 699 ILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQ 778 (1495)
T ss_pred hhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 1112111121 112334445799999998877766 79999999999999999998888
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhhhcccccccc
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 802 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~ 802 (968)
+...++.... .++|+|++||..+....++..-.+
T Consensus 779 I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L 812 (1495)
T PLN03232 779 VFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILV 812 (1495)
T ss_pred HHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEE
Confidence 8777665443 578999999998887766654333
No 389
>PLN03130 ABC transporter C family member; Provisional
Probab=99.41 E-value=6e-13 Score=176.49 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=111.4
Q ss_pred CccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.|.++ +.|++|++| |+.++|+|++||||||+++++.++.. +.+...+|||
T Consensus 1241 ~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1241 EDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred EEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECC
Confidence 4556666543 579999999 89999999999999999999999851 2233457888
Q ss_pred CcCCcch--H-----------HH---HHhhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 704 ESASIPY--F-----------DA---IMLHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 704 ~~~~~~~--~-----------~~---i~~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
+...+.- . ++ ..... |..-.+..+-+.+|+|++|+..++++ +.+|+++||||
T Consensus 1321 dp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130 1321 APVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred CCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 7644310 0 11 11111 23333444556899999998777766 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeE
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 808 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~ 808 (968)
||+++|+..-..| ...++... .++|+|+++|.++....+++.-.+.++++.
T Consensus 1401 ATSaLD~~Te~~I-q~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1401 ATAAVDVRTDALI-QKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451 (1622)
T ss_pred CCCCCCHHHHHHH-HHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 9999999776666 44444433 479999999999887766655444444443
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.6e-13 Score=151.57 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=92.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhc-CceeccCcC---------C----c----------
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-GLMVPAESA---------S----I---------- 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~-g~~vp~~~~---------~----~---------- 708 (968)
+++.++++.++ |+.++++|+||+|||||||+|+- +|+ ++.++++-. . .
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~----~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~ 166 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN----GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEK 166 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh----cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhh
Confidence 57778887665 89999999999999999999976 222 223332210 0 0
Q ss_pred ---------chHHHHHhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 002090 709 ---------PYFDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777 (968)
Q Consensus 709 ---------~~~~~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~ 777 (968)
.+.++++..+|..+.. .+...+||+|-+-...++++ ..+|+|+||||||+.||... + .-+.++|.
T Consensus 167 ~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a---v-~WLe~yL~ 242 (582)
T KOG0062|consen 167 ELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA---V-AWLENYLQ 242 (582)
T ss_pred hhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH---H-HHHHHHHh
Confidence 0112244455654433 45667899998865554444 78999999999999999954 3 45677888
Q ss_pred hcCcEEEEeccChhhhh
Q 002090 778 NIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 778 ~~g~~vl~~TH~~el~~ 794 (968)
..+.|+|++|||-.+.+
T Consensus 243 t~~~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 243 TWKITSLIVSHDRNFLN 259 (582)
T ss_pred hCCceEEEEeccHHHHH
Confidence 88899999999998865
No 391
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.2e-12 Score=147.86 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=102.9
Q ss_pred CccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCceec
Q 002090 649 SPYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVP 702 (968)
Q Consensus 649 ~~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~vp 702 (968)
.+++|.|+. +..|++|++| |++++|+||||+||||+..++-.+. .+.+...+|-
T Consensus 469 ~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~ 548 (716)
T KOG0058|consen 469 EDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVG 548 (716)
T ss_pred EEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeee
Confidence 466777764 4579999999 8999999999999999999997764 1223333565
Q ss_pred cCcCCcc--hHHH------------------------HHhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 703 AESASIP--YFDA------------------------IMLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 703 ~~~~~~~--~~~~------------------------i~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
|++..+. +.++ ....+ |-+-.+...-+++|+|++|+..|+++ ..+|.++||
T Consensus 549 QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLIL 628 (716)
T KOG0058|consen 549 QEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLIL 628 (716)
T ss_pred ccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEE
Confidence 5543321 1111 11111 11222334456899999997777766 899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
||-||.||.+. ..+....++.+.+ +.|||++.|.+...+.++.
T Consensus 629 DEATSALDaeS-E~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~ 671 (716)
T KOG0058|consen 629 DEATSALDAES-EYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQ 671 (716)
T ss_pred echhhhcchhh-HHHHHHHHHHhhc-CCeEEEEehhhhHhhhccE
Confidence 99999999955 4444555555444 5899999998887776663
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.41 E-value=9.1e-13 Score=142.80 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=54.1
Q ss_pred cchHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 729 SSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 729 s~fs~~~~~~~~il~~-a----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
..+|.++++...+... + .+|+++|||||++|+|+.....+.. ++..+.+.|.++|++||+.++...++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCC
Confidence 6788899887776665 3 3589999999999999988888854 55556666899999999988876655
No 393
>PLN03130 ABC transporter C family member; Provisional
Probab=99.40 E-value=5.2e-12 Score=167.73 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=108.4
Q ss_pred ccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh--------cCceeccCcCCcc--h---
Q 002090 650 PYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAESASIP--Y--- 710 (968)
Q Consensus 650 ~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~--------~g~~vp~~~~~~~--~--- 710 (968)
+..+.++. ++++++|++| |+.++|+||+|||||||+++|.|...... ...||||+...+. .
T Consensus 619 nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreN 698 (1622)
T PLN03130 619 NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDN 698 (1622)
T ss_pred eeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHH
Confidence 34444443 4679999999 89999999999999999999999875433 2347788754321 1
Q ss_pred -----------HHHHHh---------hc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 711 -----------FDAIML---------HM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 711 -----------~~~i~~---------~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
+.++.. .+ |..-.+..+-.++|+|++|+..++++ ..+|+++|||||++++|+..+..
T Consensus 699 I~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~ 778 (1622)
T PLN03130 699 ILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778 (1622)
T ss_pred HhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHH
Confidence 111221 12 12222334456799999998877766 79999999999999999988888
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhhhcccccccc
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 802 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~ 802 (968)
+...++..+. +++|+|++||..+....++..-.+
T Consensus 779 I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L 812 (1622)
T PLN03130 779 VFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILV 812 (1622)
T ss_pred HHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEE
Confidence 8766665443 479999999999887766654333
No 394
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.40 E-value=1.4e-12 Score=141.66 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=56.8
Q ss_pred CCccchHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 726 DGKSSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il~~-a----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
.....+|.++++...+... + .+|+++|+||||+|+|+.....+.. +++.+. .|.++|++||+.+..+.+++.
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~-~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHF-KGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHc-CCCEEEEEECCHHHHHhCCEE
Confidence 4567889999997776654 2 5789999999999999988888754 444454 488999999998888776644
No 395
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.40 E-value=9.2e-13 Score=174.29 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=105.5
Q ss_pred CccccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-------------------hhhcCceeccC
Q 002090 649 SPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAE 704 (968)
Q Consensus 649 ~~~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-------------------la~~g~~vp~~ 704 (968)
.++.+.|.+ .+.+++|++| |+.++|+|++|||||||++++.++.. +.+...++||+
T Consensus 1221 ~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQd 1300 (1490)
T TIGR01271 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQK 1300 (1490)
T ss_pred EEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCC
Confidence 455566653 4789999999 89999999999999999999999852 22233478887
Q ss_pred cCCcch----------------HHHHHhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 705 SASIPY----------------FDAIMLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 705 ~~~~~~----------------~~~i~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
...++- +...+...++ .-.+..+-..||+|++|+..++++ +.+|++||||||
T Consensus 1301 p~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEa 1380 (1490)
T TIGR01271 1301 VFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380 (1490)
T ss_pred CccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 654321 0112222222 222333445799999998777666 889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
|+++|+.....|...|.+.. .++|+|++||.++....+++.
T Consensus 1381 TS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrI 1421 (1490)
T TIGR01271 1381 SAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQF 1421 (1490)
T ss_pred cccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEE
Confidence 99999977666644444332 479999999998876655543
No 396
>PTZ00243 ABC transporter; Provisional
Probab=99.40 E-value=8.2e-13 Score=174.96 Aligned_cols=156 Identities=19% Similarity=0.137 Sum_probs=109.4
Q ss_pred CccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.|.++ ..|++|++| |+.++|+|++|||||||++++.++.. +.+...+|||
T Consensus 1312 ~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQ 1391 (1560)
T PTZ00243 1312 EGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQ 1391 (1560)
T ss_pred EEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECC
Confidence 4556666554 469999999 89999999999999999999999851 2344568898
Q ss_pred CcCCcch----------------HHHHHhhcCCCC-----------CccCCccchHHHHHHHHHHHHh-CCC-CcEEEEe
Q 002090 704 ESASIPY----------------FDAIMLHMKSYD-----------SPADGKSSFQVEMSEIRSIVTA-TTS-RSLVLID 754 (968)
Q Consensus 704 ~~~~~~~----------------~~~i~~~~~~~d-----------~~~~~~s~fs~~~~~~~~il~~-a~~-~~LlLlD 754 (968)
+...+.- +...+...++.+ .+..+-+.+|+|++|+..++++ +.+ |++||||
T Consensus 1392 dp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD 1471 (1560)
T PTZ00243 1392 DPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD 1471 (1560)
T ss_pred CCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 8654311 011222223222 2334446899999998888777 554 7999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccce
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 806 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~ 806 (968)
|||+++|+..-..| ...++... .++|+|+++|.++....+++.-.+.+++
T Consensus 1472 EATSaLD~~te~~I-q~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1521 (1560)
T PTZ00243 1472 EATANIDPALDRQI-QATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGA 1521 (1560)
T ss_pred CCCccCCHHHHHHH-HHHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 99999999776666 44444332 4799999999998877666544433333
No 397
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=1.1e-12 Score=158.65 Aligned_cols=141 Identities=16% Similarity=0.241 Sum_probs=102.0
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccCcCCcc----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASIP---- 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~~~~~~---- 709 (968)
.+.++++++. |++++|+||+||||||||++++|-.. +.++-.||+|+...++
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 3789999998 89999999999999999999999752 1233346666554332
Q ss_pred -----------------------hHHHHHhhcCCCCCccCCc-----cchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCC
Q 002090 710 -----------------------YFDAIMLHMKSYDSPADGK-----SSFQVEMSE-IRSIVTATTSRSLVLIDEICRGT 760 (968)
Q Consensus 710 -----------------------~~~~i~~~~~~~d~~~~~~-----s~fs~~~~~-~~~il~~a~~~~LlLlDEp~~Gl 760 (968)
.++.+...+|..+-..... ...|+|.++ ++..+..+++|+++++||||+||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 2345666666653222222 346666665 55556669999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEeccCh--hhhhccccc
Q 002090 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKI 799 (968)
Q Consensus 761 D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~--el~~~~~~~ 799 (968)
|...+..+ ..+++.+++.|+|||++=|.+ ++.++.++.
T Consensus 202 DS~sA~~v-v~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l 241 (613)
T KOG0061|consen 202 DSFSALQV-VQLLKRLARSGRTVICTIHQPSSELFELFDKL 241 (613)
T ss_pred chhhHHHH-HHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHh
Confidence 99888888 555666666699999999986 455555543
No 398
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.39 E-value=8.9e-13 Score=174.95 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=106.9
Q ss_pred CccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.|.++ ..|++|++| |+.++|+|++|||||||++++.++.. +.+...+|||
T Consensus 1288 ~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQ 1367 (1522)
T TIGR00957 1288 RNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367 (1522)
T ss_pred EEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECC
Confidence 3455666543 579999999 89999999999999999999999851 2233457888
Q ss_pred CcCCcch----------------HHHHHhhcC-----------CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 704 ESASIPY----------------FDAIMLHMK-----------SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 704 ~~~~~~~----------------~~~i~~~~~-----------~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
+...+.- +.+.....+ ..-.+..+-+.+|+|++|+..++++ +.+|+++||||
T Consensus 1368 dp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDE 1447 (1522)
T TIGR00957 1368 DPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDE 1447 (1522)
T ss_pred CCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 7643310 011122222 2222334456799999998777766 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 802 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~ 802 (968)
||+++|+.....| ...++... +++|+|+++|.++....+++.-.+
T Consensus 1448 aTSalD~~Te~~I-q~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVl 1492 (1522)
T TIGR00957 1448 ATAAVDLETDNLI-QSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVL 1492 (1522)
T ss_pred CcccCCHHHHHHH-HHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEE
Confidence 9999999776665 44444332 479999999998887665544333
No 399
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.35 E-value=4.9e-12 Score=138.56 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=104.3
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------------hhcCceecc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------------GICGLMVPA 703 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------------a~~g~~vp~ 703 (968)
+...+.+++|| |+.++|+|.+|||||...+.|.+++.- +.-..++++
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 45678999999 899999999999999999999998511 111224555
Q ss_pred CcCC-cch--------------------------HHHHHhhcCCCC---CccCCccchHHHHHHHHHH-HHhCCCCcEEE
Q 002090 704 ESAS-IPY--------------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRSI-VTATTSRSLVL 752 (968)
Q Consensus 704 ~~~~-~~~--------------------------~~~i~~~~~~~d---~~~~~~s~fs~~~~~~~~i-l~~a~~~~LlL 752 (968)
+... +.. .-+++..+|+.+ .+......+|+|++|..-| ++.+.+|+|+|
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLI 180 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEe
Confidence 5432 111 013455666654 3455667899999986654 55699999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
.||||..||..-.+.|...+.+.-++.|+.++|+|||+.++. ++++
T Consensus 181 ADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 181 ADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred ecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 999999999988888855555555568999999999999885 4443
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.34 E-value=1.5e-12 Score=127.61 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=68.4
Q ss_pred eeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCcc--------
Q 002090 662 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP-------- 709 (968)
Q Consensus 662 ~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~~-------- 709 (968)
++++++ |++++|+||||||||||+++|+|.... .+...++|+....++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467777 899999999999999999999998632 222335555522111
Q ss_pred ---hHHHHHhhcCCCCCc----cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 710 ---YFDAIMLHMKSYDSP----ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 710 ---~~~~i~~~~~~~d~~----~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
.+..++..++..+.. ......+|.++++...+++. +.+|+++||||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 123455555544433 34448999999987766555 89999999999996
No 401
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.4e-12 Score=143.06 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=102.3
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCceeccC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAE 704 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~vp~~ 704 (968)
.++.|.|+.+++|+.|+|| |+.++++||+|+||||+||.+-... -+.+....|||+
T Consensus 541 snvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 541 SNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred EEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 4667888899999999999 8999999999999999999997763 122333468887
Q ss_pred cCCcch--H------------H---------HHHhhc-CC----CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIPY--F------------D---------AIMLHM-KS----YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~~--~------------~---------~i~~~~-~~----~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...+.. + + .|.+++ +. .-.+...--.+|+|.+|...|++. ...|++++|||
T Consensus 621 tvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE 700 (790)
T KOG0056|consen 621 TVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE 700 (790)
T ss_pred ceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc
Confidence 644311 0 1 122222 01 011111222578888888777766 78999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.||.||+....+| ++-+..+.. +.|.|++.|.+.-.-.++
T Consensus 701 ATSALDT~tER~I-QaaL~rlca-~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 701 ATSALDTNTERAI-QAALARLCA-NRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred hhhhcCCccHHHH-HHHHHHHhc-CCceEEEeeeehheeccc
Confidence 9999999888888 666666665 567788889655433333
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.33 E-value=3.4e-12 Score=131.16 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=76.9
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcC----c---------eeccCcCCcch-HHHHHhhcCCCCCccCCccchHHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICG----L---------MVPAESASIPY-FDAIMLHMKSYDSPADGKSSFQVEM 735 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g----~---------~vp~~~~~~~~-~~~i~~~~~~~d~~~~~~s~fs~~~ 735 (968)
+.+|+||||+|||++|..|+-........ . -..+..+.+.. ++..+.-+--.+.. .-+|.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~----~~LS~Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVE----QILSGGE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCc----ccCCHHH
Confidence 88999999999999999997653110000 0 00000010000 00000001011111 1178888
Q ss_pred HHHHHHHHh-----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 736 SEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 736 ~~~~~il~~-----a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
++...+... +.+|+++|+|||++|+|+.....+... +..+.+.|.++|++||+++....+++
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~-L~~~~~~g~tiIiiSH~~~~~~~adr 166 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDM-IKEMAKHTSQFIVITLKKEMFENADK 166 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHhhCCe
Confidence 887666554 368999999999999999888877554 44555558999999999988765543
No 403
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.32 E-value=2.3e-11 Score=149.90 Aligned_cols=304 Identities=15% Similarity=0.113 Sum_probs=215.0
Q ss_pred eeechhhhc--ccCCCC-C---CCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc-----------
Q 002090 288 LHLGTATQI--GAIPTE-G---IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV----------- 350 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~~-~---~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~----------- 350 (968)
|-+|.+|++ +++++. + ..||+++ +|+|.|+||.|.||+|+..|+. +. ..|+.|+++|+.|
T Consensus 260 m~lD~~t~~nLEl~~~~~~~~~~gSL~~~-ld~t~T~mG~RlL~~wl~~PL~-~~-~~I~~Rld~Ve~l~~~~~l~~~L~ 336 (843)
T COG0249 260 MVLDAATRRNLELFSNLRGNGKKGSLFWL-LDRTVTPMGSRLLKRWLLQPLL-DK-EEIEERLDAVEELKDNPELREKLR 336 (843)
T ss_pred EEEcHHHHhcccccccCCCCCCCCcHHHH-hccCCCchhHHHHHHHhhCccc-CH-HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 799999999 677772 2 3499999 9999999999999999999999 98 9999999999987
Q ss_pred --ccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHH------HH
Q 002090 351 --TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEE------CR 422 (968)
Q Consensus 351 --l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~------~~ 422 (968)
|+++||++|+.+||..++++++|+..+++.+..+ +++...+.....+. ++...... +.
T Consensus 337 ~~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~l~~~------~~i~~~l~~~~~~~--------~l~~~~~~i~~~~~~~ 402 (843)
T COG0249 337 EMLKKVPDLERLLSRLSLGRASPRDLLRLRDSLEKI------PEIFKLLSSLKSES--------DLLLLLEDIESLDYLA 402 (843)
T ss_pred HHHhcCcCHHHHHHHHHcCCCChhhHHHHHHHHHHH------HHHHHHHhccccch--------hhhHHhhhhhccccHH
Confidence 8889999999999999999999999999999999 99998887665331 22222221 33
Q ss_pred HHhhchhhhhhccCCchhhhcccCCCchhHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccc
Q 002090 423 LASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATT 502 (968)
Q Consensus 423 ~~~~~i~~~i~l~~e~~~~~~~~~~I~~~~~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i 502 (968)
+....+...+. ++||..+++ ++|.+||+.++| .++.. .+...+...+++....+.. .+ +..
T Consensus 403 e~~~ll~~~i~--~~~~~~~~~-~ii~~g~~~eLd-~lr~~---------~~~~~~~i~~le~~~r~~~-gi----~sl- 463 (843)
T COG0249 403 ELLELLETAIN--EDPPLAVRD-GIIKEGYNIELD-ELRDL---------LNNAKEWIAKLELEERERT-GI----KSL- 463 (843)
T ss_pred HHHHHHHHHhh--hcchhhcch-hHHhcchhHHHH-HHHHH---------HHHHHHHHHHHHHHHHHhc-CC----chh-
Confidence 55566666666 899988888 999999999997 33222 2223333333222211111 00 100
Q ss_pred cCCCCCChhhhh-hhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEE---eehHHHHHHHHHHHHHHH
Q 002090 503 APLGGPKGEILY-AREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEW---FSTLKVEEALERYHEAGA 578 (968)
Q Consensus 503 ~~tgg~~~ki~y-~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~---f~T~eL~ea~~k~~~ae~ 578 (968)
+ .+++...+| ..... .++...+. .+++.++.++..+|.++ ....++.++.+++...|.
T Consensus 464 k--i~~n~v~Gy~ievt~----~~~~~~p~------------~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~ 525 (843)
T COG0249 464 K--IKYNKVYGYYIEVTK----SNAKLVPD------------DYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEY 525 (843)
T ss_pred h--hhhhccceeEEEech----hccccCch------------HHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112322232 21111 11111111 16677778888888877 446688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcccCccccccccCcceeEEcCC
Q 002090 579 KAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGL 648 (968)
Q Consensus 579 ~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~ 648 (968)
+++.++.+.+......++..+..|+.++.++++|.......+.-....-. +.+. +.+||||++...+
T Consensus 526 ~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~-~~l~--i~~gRHPvvE~~~ 592 (843)
T COG0249 526 ELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDS-NDLE--IKEGRHPVVEAVL 592 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCC-CCEE--EEecCcchhhhhc
Confidence 99999999999999999999999999999999998775544332211111 1122 5678999887544
No 404
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.5e-11 Score=132.65 Aligned_cols=161 Identities=15% Similarity=0.196 Sum_probs=109.3
Q ss_pred CCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCcee-----ccCc--CCcchHHHHHh
Q 002090 648 LSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV-----PAES--ASIPYFDAIML 716 (968)
Q Consensus 648 ~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~v-----p~~~--~~~~~~~~i~~ 716 (968)
++++.|.+....+-++.|++ |+++-|+|.||||||||++.+.|+......+.++ .++. ..-..+..+|.
T Consensus 325 lrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFs 404 (546)
T COG4615 325 LRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFS 404 (546)
T ss_pred eeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhh
Confidence 34555555555566666666 8999999999999999999998875433222222 1111 00112223333
Q ss_pred hcCCCCC-------------------------cc-----CCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCHHHH
Q 002090 717 HMKSYDS-------------------------PA-----DGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 717 ~~~~~d~-------------------------~~-----~~~s~fs~~~~~-~~~il~~a~~~~LlLlDEp~~GlD~~~~ 765 (968)
++-.-+. .+ ...-.+|.|+++ ++.+++.+.+++++++||-.+--||.-+
T Consensus 405 DyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFR 484 (546)
T COG4615 405 DYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFR 484 (546)
T ss_pred hHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHH
Confidence 3211111 00 011134556665 6667777999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeE
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 808 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~ 808 (968)
..+...++-.+++.|+||+.+|||-.-...+++.-.+.++...
T Consensus 485 R~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 485 REFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred HHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCcee
Confidence 9999999999999999999999998777777777666666544
No 405
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.30 E-value=1e-11 Score=136.21 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=96.8
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcC-Cc---
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA-SI--- 708 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~-~~--- 708 (968)
..+.+++|+ |+.++|+|.+|||||||=+++..++.- ..-...|++++. .+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 467888988 899999999999999999999887511 111112333321 00
Q ss_pred -c-----------------------hHHHHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 709 -P-----------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 709 -~-----------------------~~~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
. .+-..+..+|... ...+....||+|++|...|.++ +.+|++++||||||.||-
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 0 0112334455543 3456778999999997777666 899999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCcEEEEeccChhhhh
Q 002090 763 AKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 763 ~~~~~i~~~ll~~l-~~~g~~vl~~TH~~el~~ 794 (968)
.-...+ ..+++.| .+.|.+-+|+|||+..+.
T Consensus 460 SVQaQv-v~LLr~LQ~k~~LsYLFISHDL~Vvr 491 (534)
T COG4172 460 SVQAQV-LDLLRDLQQKHGLSYLFISHDLAVVR 491 (534)
T ss_pred HHHHHH-HHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 887777 4455555 457999999999998875
No 406
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=99.30 E-value=3.2e-11 Score=150.23 Aligned_cols=302 Identities=15% Similarity=0.106 Sum_probs=200.2
Q ss_pred eeechhhhc--ccCCC-C--CCCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc------------
Q 002090 288 LHLGTATQI--GAIPT-E--GIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV------------ 350 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~-~--~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~------------ 350 (968)
|.||.+|.+ +++++ . ...||+++ +++|.|+||+|.||+|++.|+. +. ..|++|++.++.|
T Consensus 249 m~lD~~t~~~LEl~~~~~~~~~gSL~~~-ld~t~T~~G~RlLr~wl~~Pl~-d~-~~I~~Rld~Ve~l~~~~~l~~~l~~ 325 (840)
T TIGR01070 249 MQLDAATRRNLELTENLRGGKQNTLFSV-LDETKTAMGSRLLKRWLHRPLR-DR-EVLEARQDTVEVLLRHFFLREGLRP 325 (840)
T ss_pred EEeCHHHHHhccCCccCCCCCCCcHHHH-HhhcCCHHHHHHHHHHhhCCCC-CH-HHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 899999998 77876 2 23499999 9999999999999999999999 99 9999999999987
Q ss_pred -ccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhhchh
Q 002090 351 -TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIG 429 (968)
Q Consensus 351 -l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~i~ 429 (968)
|+++||++|+.+++..+.++++|+..+++.+..+ +.+++.+.....+ ...++...+..+....+.++
T Consensus 326 ~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~------~~l~~~l~~~~~~------~l~~l~~~l~~~~~l~~~i~ 393 (840)
T TIGR01070 326 LLKEVGDLERLAARVALGNARPRDLARLRTSLEQL------PELRALLEELEGP------TLQALAAQIDDFSELLELLE 393 (840)
T ss_pred HhccCcCHHHHHHHHHcCCCCHHHHHHHHHHHHHH------HHHHHHHHhcCcH------HHHHHHHhcccHHHHHHHHH
Confidence 8899999999999999999999999999999999 7777777543222 11222223334445556667
Q ss_pred hhhhccCCchhhhcccCCCchhHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCch-h-hhhhhcccccCCCC
Q 002090 430 EMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFL-P-IISRIKATTAPLGG 507 (968)
Q Consensus 430 ~~i~l~~e~~~~~~~~~~I~~~~~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~-p-~~~~e~~~i~~tgg 507 (968)
..+. +++|....+++.|++++++++|. ++.. .++.++....+.....+... + +..+. . ...|
T Consensus 394 ~~i~--~~~~~~~~~~~~I~~g~~~~Ld~-lr~~---------~~~~~~~l~~l~~~~~~~~~i~~lk~~~-~---~~~g 457 (840)
T TIGR01070 394 AALI--ENPPLVVRDGGLIREGYDEELDE-LRAA---------SREGTDYLARLEARERERTGIPTLKVGY-N---AVFG 457 (840)
T ss_pred HHHh--cCCccccccCCeeCCCCCHHHHH-HHHH---------HHHHHHHHHHHHHHHHHHcCCCceEEEE-e---cCce
Confidence 7776 78888888899999999999973 3222 22333333333222222110 1 10000 0 1122
Q ss_pred CChhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEE---eehHHHHHHHHHHHHHHHHHHHHH
Q 002090 508 PKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEW---FSTLKVEEALERYHEAGAKAKAKV 584 (968)
Q Consensus 508 ~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~---f~T~eL~ea~~k~~~ae~~a~~~i 584 (968)
+-.++.-.... .+++ .|.+....++. .+|.++ ....++.++.+++.+.+.+++.++
T Consensus 458 y~iev~~~~~~---~vp~------~~i~~~s~~~~------------~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L 516 (840)
T TIGR01070 458 YYIEVTRGQLH---LVPA------HYRRRQTLKNA------------ERYITPELKEKEDKVLEAEGKILALEKELFEEL 516 (840)
T ss_pred EEEEEehhhhh---cCCc------ceEEEEeccCc------------eEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211100 0111 11111122222 233333 124578888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcc-cCccccccccCcceeEE
Q 002090 585 LELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWV-FPALKDIELDGANCLKM 645 (968)
Q Consensus 585 ~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~-~P~~~~~~~~~~~~~~~ 645 (968)
.+.+.+....++..++.+..+|.++++|.+...+.+ .+-..+ .+.+. +.++|||+..
T Consensus 517 ~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~--~~P~~~~~~~i~--i~~~RHP~le 574 (840)
T TIGR01070 517 RELLKKYLEALQEAARALAELDVLANLAEVAETLHY--TRPRFGDDPQLR--IREGRHPVVE 574 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--cCceecCCCcEE--EEeeECHHHH
Confidence 999999999999999999999999999976554432 222222 23332 5678888764
No 407
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.29 E-value=1.9e-11 Score=151.52 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=112.4
Q ss_pred CCccccccC--CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCcee
Q 002090 648 LSPYWFDAA--EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMV 701 (968)
Q Consensus 648 ~~~~~~~~~--~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~v 701 (968)
+.++.|.|+ .+.+|++|+++ |+.++|+||+||||||.+-++-... .+.+....|
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lV 1069 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLV 1069 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhccee
Confidence 345566665 35689999999 8999999999999999998887663 122233356
Q ss_pred ccCcCCcc--hHHHHHh------------------------hc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 702 PAESASIP--YFDAIML------------------------HM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 702 p~~~~~~~--~~~~i~~------------------------~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
.|++..+. +.++|.. .+ |..-.+...-..+|+|++|+..|+++ +.+|++||
T Consensus 1070 sQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILL 1149 (1228)
T KOG0055|consen 1070 SQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILL 1149 (1228)
T ss_pred ccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeee
Confidence 66654431 1111111 00 11222333345789999998877776 89999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEE
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 810 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~ 810 (968)
|||-||.||.+ ...+.+.-++.... |.|+|+++|.+...+.++....+.++.+...
T Consensus 1150 LDEATSALDse-SErvVQeALd~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1150 LDEATSALDSE-SERVVQEALDRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred eeccchhhhhh-hHHHHHHHHHHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999994 45555777776654 7899999998888887777666666655443
No 408
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.28 E-value=1.3e-11 Score=130.50 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=50.3
Q ss_pred cCCccchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-C-cEEEEeccChhh
Q 002090 725 ADGKSSFQVEMSEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-G-CLGIVSTHLHGI 792 (968)
Q Consensus 725 ~~~~s~fs~~~~~~~~il~~-----a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g-~~vl~~TH~~el 792 (968)
.....++|.+++++..+... +.+|+++|+|||++|+|+.....+...+.+ +.+. | .++|++||++..
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~-~~~~~g~~~viiith~~~~ 194 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE-TACKEGTSQYFLITPKLLP 194 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH-HhhcCCCceEEEEchhhcc
Confidence 34556899999997654432 689999999999999999888888544444 4444 5 579999998643
No 409
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.26 E-value=7.4e-11 Score=147.79 Aligned_cols=304 Identities=16% Similarity=0.100 Sum_probs=203.6
Q ss_pred eeechhhhc--ccCCC-CC--CCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc------------
Q 002090 288 LHLGTATQI--GAIPT-EG--IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV------------ 350 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~-~~--~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~------------ 350 (968)
|+||..|.. +++++ .+ ..||+++ +++|.|+||+|+||+|++.|+. +. ..|++|++.++.|
T Consensus 263 m~lD~~tl~~Lei~~~~~~~~~gSL~~~-ld~t~T~~G~RlLr~wl~~Pl~-d~-~~I~~R~d~Ve~l~~~~~~~~~l~~ 339 (854)
T PRK05399 263 LILDAATRRNLELTENLRGGRKNSLLSV-LDRTVTAMGGRLLRRWLHRPLR-DR-EAIEARLDAVEELLEDPLLREDLRE 339 (854)
T ss_pred EEcCHHHHHhccCCccCCCCCCCcHHHH-hccCCCcHHHHHHHHHHhCcCC-CH-HHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 799999888 77876 22 2399999 9999999999999999999999 99 9999999999987
Q ss_pred -ccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhhchh
Q 002090 351 -TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIG 429 (968)
Q Consensus 351 -l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~i~ 429 (968)
|+++||++|+.+++..++++++|+..|++.+..+ +.++..+.....+ ++.++...+..+......++
T Consensus 340 ~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~------~~l~~~l~~~~~~------~l~~l~~~l~~~~~l~~~i~ 407 (854)
T PRK05399 340 LLKGVYDLERLLSRIALGRANPRDLAALRDSLEAL------PELKELLAELDSP------LLAELAEQLDPLEELADLLE 407 (854)
T ss_pred HHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH------HHHHHHHHhcCcH------HHHHHHhhcccHHHHHHHHH
Confidence 8899999999999999999999999999999999 7777777543211 12233333344555556677
Q ss_pred hhhhccCCchhhhcccCCCchhHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCch-hhhhhhcccccCCCCC
Q 002090 430 EMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFL-PIISRIKATTAPLGGP 508 (968)
Q Consensus 430 ~~i~l~~e~~~~~~~~~~I~~~~~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~-p~~~~e~~~i~~tgg~ 508 (968)
..+. +++|....+++.|++++++++|. ++. .++++++....+...+.+++. +. .+.+.. +..|+
T Consensus 408 ~~i~--~~~~~~~~~~~~i~~g~~~~Ld~-lr~---------~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~--~~~gy 472 (854)
T PRK05399 408 RAIV--EEPPLLIRDGGVIADGYDAELDE-LRA---------LSDNGKDWLAELEARERERTGISS-LKVGYN--KVFGY 472 (854)
T ss_pred HHHc--cCCchhcccCCEECCCCCHHHHH-HHH---------HHHHHHHHHHHHHHHHHHHcCCCc-eEEEEc--CceeE
Confidence 7776 67777778889999999999973 322 223333333333322222221 10 011100 00112
Q ss_pred ChhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEEe---ehHHHHHHHHHHHHHHHHHHHHHH
Q 002090 509 KGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWF---STLKVEEALERYHEAGAKAKAKVL 585 (968)
Q Consensus 509 ~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f---~T~eL~ea~~k~~~ae~~a~~~i~ 585 (968)
-.++.-... ...|..|.+ .++.++..+|.++. ...++.++.+++.+.+.+++.++.
T Consensus 473 ~iev~~~~~---------~~vp~~~~~------------~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~ 531 (854)
T PRK05399 473 YIEVTKANL---------DKVPEDYIR------------RQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELR 531 (854)
T ss_pred EEEEEcchh---------hhCChhhhh------------eeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211100 011111221 12345556666553 244667777888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcc-cCccccccccCcceeEEc
Q 002090 586 ELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWV-FPALKDIELDGANCLKMN 646 (968)
Q Consensus 586 eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~-~P~~~~~~~~~~~~~~~~ 646 (968)
+.+.+....++..++.+..+|.++++|.+.....+. +...+ -|.+. +.++|||+...
T Consensus 532 ~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~--~P~~~~~~~l~--i~~~rHP~le~ 589 (854)
T PRK05399 532 EEVAEHIERLQKLAKALAELDVLASLAEVAEENNYV--RPEFTDDPGID--IEEGRHPVVEQ 589 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc--ccEEeCCCCEE--EEeccCcEEec
Confidence 999999999999999999999999999876554332 22222 23332 67789998753
No 410
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.25 E-value=1.9e-11 Score=138.66 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=84.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--hhcCcee------ccC--------------cCCc---
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GICGLMV------PAE--------------SASI--- 708 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--a~~g~~v------p~~--------------~~~~--- 708 (968)
+..++.|.+| |+.++|+|||||||||+|++|++-... .+++.|. |.. ...+
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~ 166 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYL 166 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHH
Confidence 5678888888 899999999999999999999876421 1111111 000 0000
Q ss_pred -------------chHHH-------------------HHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 709 -------------PYFDA-------------------IMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 709 -------------~~~~~-------------------i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
..++. ++..+|.. ....+....||+|.+.++.+.+. ..+|+|+|||
T Consensus 167 ~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLD 246 (614)
T KOG0927|consen 167 AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLD 246 (614)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEec
Confidence 00011 11112211 11223345678887776655554 7999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEeccChhhhh
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGC-LGIVSTHLHGIFS 794 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~-~vl~~TH~~el~~ 794 (968)
|||+|||+... .-+-++|.+... ++++++|+.++..
T Consensus 247 EPtnhLDleA~----~wLee~L~k~d~~~lVi~sh~QDfln 283 (614)
T KOG0927|consen 247 EPTNHLDLEAI----VWLEEYLAKYDRIILVIVSHSQDFLN 283 (614)
T ss_pred CCccCCCHHHH----HHHHHHHHhccCceEEEEecchhhhh
Confidence 99999999542 344556666555 8999999988853
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.24 E-value=2e-11 Score=135.60 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=97.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh------cCceeccCcC-----Cc---------------chHHHHHhhcCCC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI------CGLMVPAESA-----SI---------------PYFDAIMLHMKSY 721 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~------~g~~vp~~~~-----~~---------------~~~~~i~~~~~~~ 721 (968)
|++++++||||-|||||.|+++|.+-... ..+|-||--. .+ .+...++..+++.
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~ 446 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE 446 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH
Confidence 79999999999999999999999874331 2234454211 00 1123455666777
Q ss_pred CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcc
Q 002090 722 DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 722 d~~~~~~s~fs~~~~~-~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
+-+.+....+|+|..| ++.+++.+.+.+|.|||||.+.||.+.+...+..|-+...+.+++.+++-||+-+.++.
T Consensus 447 ~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 447 DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhh
Confidence 7777888888886666 45555568899999999999999999888887777777777889999999998877653
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.21 E-value=2.5e-10 Score=134.27 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=102.7
Q ss_pred cceeEEcCCCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhc---------CceeccCcC
Q 002090 640 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC---------GLMVPAESA 706 (968)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~---------g~~vp~~~~ 706 (968)
++.+.++++ ....+++...++++++ |+-+.|+||||||||||+|+|+|+-.-+.. -.|+||.+-
T Consensus 390 ~~~i~~~nl---~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY 466 (604)
T COG4178 390 DHGITLENL---SLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY 466 (604)
T ss_pred cceeEEeee---eEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC
Confidence 345555443 2333566788888888 899999999999999999999999632221 245666431
Q ss_pred C-----------------cc--hHHHHHhhcCCCC------CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002090 707 S-----------------IP--YFDAIMLHMKSYD------SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGT 760 (968)
Q Consensus 707 ~-----------------~~--~~~~i~~~~~~~d------~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~Gl 760 (968)
. ++ .+-+++..++..+ ........+|.|.+|....++. .++|++++|||-|+++
T Consensus 467 ~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL 546 (604)
T COG4178 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546 (604)
T ss_pred CCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc
Confidence 1 00 0112333333332 2233455678888876665555 8999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 761 D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
|+.....+...+.+.+ .++|+|-++|...+..+..
T Consensus 547 De~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~h~ 581 (604)
T COG4178 547 DEETEDRLYQLLKEEL--PDATVISVGHRPTLWNFHS 581 (604)
T ss_pred ChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHHHh
Confidence 9988777755555544 4799999999877765433
No 413
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.20 E-value=1.5e-10 Score=121.39 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=82.1
Q ss_pred HHHHHhhccCCCc------chHHHHHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHH
Q 002090 321 ILYVRDLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELN 394 (968)
Q Consensus 321 ~r~Lr~L~l~p~~------~sl~~~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~ 394 (968)
+.|+++|+++++. ++|++.|++|+|.+|. |+|+.|+.+| +.|...|+.|+++|.+|.+|+.++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~t~T~~Gk--------r~L~~~l~~P---~~d~~~I~~R~~~v~~~~~n~~~~ 69 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNRTSTPMGK--------RLLRSWLLQP---LTDIEEIEKRQDAVEEFLQNEELR 69 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH---SSHHHH--------HHHHHHHHS----BS-HHHHHHHHHHHHHHHHTHHHH
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhcCCChHHH--------HHHHHHHhCc---cchHHHHHHHHHHHHHHHHhhhHh
Confidence 4799999999854 5999999999999999 9999999999 999999999999999999999999
Q ss_pred HHHHHhcCcccccccccccHHHHHHHHHHHhhchhhhhhc
Q 002090 395 EILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISL 434 (968)
Q Consensus 395 ~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~i~~~i~l 434 (968)
..++..+..++ |+++++.++..+...+.++..+
T Consensus 70 ~~~~~~l~~~~-------di~~~l~~l~~~~~~~~~~~~l 102 (204)
T PF05192_consen 70 EELRSILKKIP-------DIERILKRLRSGRASPQDLLKL 102 (204)
T ss_dssp HHHHHHHTTC--------SHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhhhhhhccc-------hHHHHHHHHHHhhcChHHHHHH
Confidence 99998888877 9999999998887777777764
No 414
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.19 E-value=4.7e-11 Score=132.74 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=100.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh----------------hcCc------------------------eeccC---
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGL------------------------MVPAE--- 704 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la----------------~~g~------------------------~vp~~--- 704 (968)
|.+++|+||||-||||.+|+++|.+... ..|. ++|..
T Consensus 100 G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG 179 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG 179 (591)
T ss_pred CcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc
Confidence 7899999999999999999999985210 0000 11110
Q ss_pred --------cCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002090 705 --------SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 775 (968)
Q Consensus 705 --------~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~-il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~ 775 (968)
....+.+|.+..++++...+.+..+.+|+|..|... .++.+.+.++.++|||++-||..++...+..|-+
T Consensus 180 ~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Ire- 258 (591)
T COG1245 180 KVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE- 258 (591)
T ss_pred hHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHH-
Confidence 001245677888888888888999999987666554 4555889999999999999999999998555555
Q ss_pred HHhcCcEEEEeccChhhhhccccccccccc
Q 002090 776 LDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 776 l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
+.+.+++||++.||+...++.....++.++
T Consensus 259 l~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 259 LAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 555589999999999888765544444443
No 415
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.17 E-value=9.7e-11 Score=128.65 Aligned_cols=138 Identities=21% Similarity=0.243 Sum_probs=104.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhc-------C----------ceeccCc-CCc---chHH
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------G----------LMVPAES-ASI---PYFD 712 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~-------g----------~~vp~~~-~~~---~~~~ 712 (968)
..+++.|+++ |++++|+|++|+||||++++|+|...---. | ..+|.+. ..+ .+.+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 4578999998 899999999999999999999998631111 1 1222211 001 1222
Q ss_pred -------------HHHhhcCCCCCcc--CCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 002090 713 -------------AIMLHMKSYDSPA--DGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776 (968)
Q Consensus 713 -------------~i~~~~~~~d~~~--~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l 776 (968)
.++.+.|+.|-.. ...+.+|.|+++.+.+++. +..|.+++.||..+.||+..+..++..+-+..
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 3444555555432 3456778899998888777 78889999999999999999999999999988
Q ss_pred HhcCcEEEEeccChhhhhc
Q 002090 777 DNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 777 ~~~g~~vl~~TH~~el~~~ 795 (968)
++.|.|.+++||..|+.+.
T Consensus 555 Re~giTlivvThrpEv~~A 573 (593)
T COG2401 555 REAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHhCCeEEEEecCHHHHhc
Confidence 8899999999999998753
No 416
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=1.7e-10 Score=143.98 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=62.9
Q ss_pred hcCCCC-CccCCccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 717 HMKSYD-SPADGKSSFQVEMSEIRSIVTA-TT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 717 ~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~---~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+++.. .+.+...++|+|++|...++.. +. +|+++||||||+|||+.+...+ ..+++.+.+.|.|+|++||+++
T Consensus 814 ~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L-~~~L~~l~~~G~TVIvi~H~~~ 892 (924)
T TIGR00630 814 DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKL-LEVLQRLVDQGNTVVVIEHNLD 892 (924)
T ss_pred HcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHH
Confidence 445543 3566778999999998777665 32 5899999999999999988888 4555566777999999999999
Q ss_pred hhhccc
Q 002090 792 IFSLPL 797 (968)
Q Consensus 792 l~~~~~ 797 (968)
+...++
T Consensus 893 ~i~~aD 898 (924)
T TIGR00630 893 VIKTAD 898 (924)
T ss_pred HHHhCC
Confidence 876544
No 417
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.15 E-value=1.1e-10 Score=152.03 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=66.7
Q ss_pred hhcCCCCC-ccCCccchHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 716 LHMKSYDS-PADGKSSFQVEMSEIRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 716 ~~~~~~d~-~~~~~s~fs~~~~~~~~il~~a----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
..+++.+. +.....++|+|++|+..+++.+ .+|+++||||||+|||+.+...+ ..+++.+.+.|.|+|++||++
T Consensus 794 ~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~L-l~lL~~L~~~G~TVIiIsHdl 872 (1809)
T PRK00635 794 CSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL-IYVLQSLTHQGHTVVIIEHNM 872 (1809)
T ss_pred HHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCH
Confidence 34566554 5677789999999988777664 68999999999999999888888 555666777799999999999
Q ss_pred hhhhccccc
Q 002090 791 GIFSLPLKI 799 (968)
Q Consensus 791 el~~~~~~~ 799 (968)
+....+++.
T Consensus 873 ~~i~~aDrV 881 (1809)
T PRK00635 873 HVVKVADYV 881 (1809)
T ss_pred HHHHhCCEE
Confidence 987665544
No 418
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.15 E-value=1.9e-10 Score=143.90 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=63.4
Q ss_pred hcCCCC-CccCCccchHHHHHHHHHHHHh-CCCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 717 HMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSR---SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 717 ~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~---~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+++.. .+.....++|+|++|...+++. +.+| +++|||||++|||+.+...+ ..+++.+.+.|.|+|++||+++
T Consensus 816 ~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L-~~~L~~l~~~G~TVIiitH~~~ 894 (943)
T PRK00349 816 DVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKL-LEVLHRLVDKGNTVVVIEHNLD 894 (943)
T ss_pred HCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCHH
Confidence 345543 3566778999999997777665 5666 89999999999999988888 4556667777999999999999
Q ss_pred hhhccc
Q 002090 792 IFSLPL 797 (968)
Q Consensus 792 l~~~~~ 797 (968)
+...++
T Consensus 895 ~i~~aD 900 (943)
T PRK00349 895 VIKTAD 900 (943)
T ss_pred HHHhCC
Confidence 876544
No 419
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=3.9e-11 Score=148.72 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=92.9
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-------------------hhhcCceeccCcCCc-----
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAESASI----- 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-------------------la~~g~~vp~~~~~~----- 708 (968)
+.+.+++|++= |.+++|+|+|||||||||++++|=.. .++..+||-|..-.+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 45678999985 88999999999999999999998631 122222333321111
Q ss_pred ----------------------chHHHHHhhcCCCCCcc-----CCccchHHHHHHHHHHH-HhCCCC-cEEEEeCCCCC
Q 002090 709 ----------------------PYFDAIMLHMKSYDSPA-----DGKSSFQVEMSEIRSIV-TATTSR-SLVLIDEICRG 759 (968)
Q Consensus 709 ----------------------~~~~~i~~~~~~~d~~~-----~~~s~fs~~~~~~~~il-~~a~~~-~LlLlDEp~~G 759 (968)
.+++++..-+++.+.-+ .+ +-++.|++++..|. ..+.+| +||+|||||+|
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 22345555555542211 12 45777777765553 336788 99999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 760 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 760 lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
||...+..+ ..+++.+.+.|.+||.+=|.+.
T Consensus 961 LDsqaA~~i-~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 961 LDSQAAAIV-MRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred ccHHHHHHH-HHHHHHHHhcCCeEEEEecCCc
Confidence 999776555 7888889999999999999864
No 420
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=1.2e-09 Score=138.94 Aligned_cols=162 Identities=18% Similarity=0.161 Sum_probs=113.3
Q ss_pred eeEEcCCCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcCCc--
Q 002090 642 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASI-- 708 (968)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~~~-- 708 (968)
.+.+++..--|-. .+..+.++||+| |+.++|+||-|||||+||.+|.|-...- ..-.|+||++-.+
T Consensus 518 ~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNG 596 (1381)
T ss_pred eEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCC
Confidence 4555444333332 334558999998 8999999999999999999999975321 1234788764221
Q ss_pred --------------chHHHHHhhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 709 --------------PYFDAIMLHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 709 --------------~~~~~i~~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
...+++.... |+.-.+...-.++|+|++++..++++ -.+.+++|||.|.|.+|.
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDa 676 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDA 676 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhH
Confidence 0112222222 22223344556899999998887777 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
..+..|....+..+. +++|+|++||..++...++..--+.++
T Consensus 677 hvg~~if~~ci~~~L-~~KT~ILVTHql~~L~~ad~Iivl~~G 718 (1381)
T KOG0054|consen 677 HVGKHIFEECIRGLL-RGKTVILVTHQLQFLPHADQIIVLKDG 718 (1381)
T ss_pred hhhHHHHHHHHHhhh-cCCEEEEEeCchhhhhhCCEEEEecCC
Confidence 999999988885544 478999999988887766654444443
No 421
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.09 E-value=3.7e-10 Score=113.79 Aligned_cols=154 Identities=18% Similarity=0.293 Sum_probs=96.6
Q ss_pred eEEcCCCccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh----c--------------C--
Q 002090 643 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----C--------------G-- 698 (968)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~----~--------------g-- 698 (968)
+.+.|+. |.|....++.-|+++ |....++|.||||||||||+++|--+..- . |
T Consensus 14 ievsgl~---f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 14 IEVSGLQ---FKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred EEEeccE---EecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4444442 444555577788877 78999999999999999999998632110 0 0
Q ss_pred ceeccC-------cCCcch-----HHHHHhhcCCCC-------------CccCCccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 699 LMVPAE-------SASIPY-----FDAIMLHMKSYD-------------SPADGKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 699 ~~vp~~-------~~~~~~-----~~~i~~~~~~~d-------------~~~~~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
+|.-.+ ...+|. ...+...++-.+ ++.-.....|.|+++...|.-- ..+-+++|
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLL 170 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLL 170 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEE
Confidence 000000 000110 011111111111 1112234567788887776555 45559999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh-hhhccccc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG-IFSLPLKI 799 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e-l~~~~~~~ 799 (968)
|||.|--||...++.+..-+-+....+|+||+.+||-.+ +.+-+.+.
T Consensus 171 LDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl 218 (291)
T KOG2355|consen 171 LDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHL 218 (291)
T ss_pred eeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhE
Confidence 999999999999999988888888889999999999765 44444333
No 422
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.07 E-value=7.7e-10 Score=109.53 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=100.8
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCC-------cc
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESAS-------IP 709 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~-------~~ 709 (968)
+.+.+|| |..++|+|.||||||||.|+++|++.. ++..-+++++... ++
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iG 107 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIG 107 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhh
Confidence 4455666 788999999999999999999999621 2222234443221 00
Q ss_pred h-----------------HHHHHh---hcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 002090 710 Y-----------------FDAIML---HMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC 767 (968)
Q Consensus 710 ~-----------------~~~i~~---~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~ 767 (968)
. -.+||. .+|.. |........++.+++|...+.++ ..+|+++|.||...+||..-+..
T Consensus 108 qiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQ 187 (267)
T COG4167 108 QILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQ 187 (267)
T ss_pred hHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHH
Confidence 0 013333 33432 33344556677788887766655 78999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEE
Q 002090 768 IAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 810 (968)
Q Consensus 768 i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~ 810 (968)
+....++.-.+.|.+.|.+|.++...+- ..+.+..+|.+..
T Consensus 188 l~NL~LeLQek~GiSyiYV~QhlG~iKH--i~D~viVM~EG~v 228 (267)
T COG4167 188 LINLMLELQEKQGISYIYVTQHIGMIKH--ISDQVLVMHEGEV 228 (267)
T ss_pred HHHHHHHHHHHhCceEEEEechhhHhhh--hcccEEEEecCce
Confidence 9888888767789999999998887542 2234444444433
No 423
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.7e-10 Score=124.19 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=103.1
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--------------------HhhhcCceeccCc
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAES 705 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--------------------~la~~g~~vp~~~ 705 (968)
++.|.+.+.++++++++| |+.++|+||+|+||||++|.+-... .+....+.||++.
T Consensus 267 ~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 267 NVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred EEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccc
Confidence 445666778899999999 8999999999999999999997764 1233445688876
Q ss_pred CCcchHHHHHhhc------------------------------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 706 ASIPYFDAIMLHM------------------------------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 706 ~~~~~~~~i~~~~------------------------------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
..+.- .++..+ |..-.+...--..|+|.+|...|.+. ..+|+++++|
T Consensus 347 vLFND--ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~d 424 (497)
T COG5265 347 VLFND--TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424 (497)
T ss_pred eehhh--hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEe
Confidence 54321 111111 00000111112457788887777766 7899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccce
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 806 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~ 806 (968)
|.||.||+..-.+| .+-++.+. .|.|.+++-|.+.-.--++..-.+.++.
T Consensus 425 eatsaldt~te~~i-q~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 425 EATSALDTHTEQAI-QAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred hhhhHhhhhHHHHH-HHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999888888 45455444 5788999999666544444433333333
No 424
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=8e-10 Score=121.82 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHH-h--CC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 730 SFQVEMSEIRSIVT-A--TT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 730 ~fs~~~~~~~~il~-~--a~--~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
.+|+++++...+.. . +. +|+++|+|||++|+|+.....+...+.+ +.+ +.++|++||++++...++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~-~~~-~~tii~isH~~~~~~~~d~ 241 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE-LSR-SHQVLCITHLPQVAAMADN 241 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhC-CCEEEEEechHHHHHhcCc
Confidence 47888888666543 2 22 9999999999999999888887555544 443 7899999999987665543
No 425
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.95 E-value=3.3e-08 Score=113.56 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=96.6
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------h----hcCceeccCcC-C---------cch-
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G----ICGLMVPAESA-S---------IPY- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------a----~~g~~vp~~~~-~---------~~~- 710 (968)
+..+..+++| |.-+.|+||||+|||+|||.++|+... . +...|+||.+- . .|.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 6777888999 899999999999999999999999632 1 22357888642 1 110
Q ss_pred ----------------------HHHHHhhcCCCC--CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 711 ----------------------FDAIMLHMKSYD--SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 711 ----------------------~~~i~~~~~~~d--~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
...+..+.|--| ....+...+|.|.+|+...++. -++|++-||||-|+++|...-
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 012344444444 4445667888877776666655 899999999999999998554
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
.+ +-+.+++.|.|.|-++|...+.+.
T Consensus 607 ~~----~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 607 GA----LYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HH----HHHHHHHcCCeEEEeccHHHHHhh
Confidence 43 445556779999999998777654
No 426
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.95 E-value=1.3e-08 Score=115.16 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=95.9
Q ss_pred CCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------hhcCceeccCcC-Ccch-----------
Q 002090 656 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------GICGLMVPAESA-SIPY----------- 710 (968)
Q Consensus 656 ~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------a~~g~~vp~~~~-~~~~----------- 710 (968)
+.+..+.+.++| |.-+.||||||||||+|+|+++|+... .+...|+||.+- ..+-
T Consensus 492 P~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~ 571 (728)
T KOG0064|consen 492 PAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSS 571 (728)
T ss_pred cCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcH
Confidence 456677788888 788999999999999999999999632 233456676531 1100
Q ss_pred ---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 711 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 711 ---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
++.+..+-+--|-+..+..-+++|.+|...+++. -.+|...+|||-|++..+.--
T Consensus 572 e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE--- 648 (728)
T KOG0064|consen 572 EQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVE--- 648 (728)
T ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchH---
Confidence 0112222222333444555678888888877776 789999999999999988443
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
..+.+..++.|.+.|-+||...+-.+
T Consensus 649 -~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 649 -GKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred -HHHHHHHHhcCceEEEeecCccHHHH
Confidence 44566677789999999998877654
No 427
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=4.1e-09 Score=105.21 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 731 FQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 731 fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
.|-|..-+..+.++..+.-+.|||||-++|+|.-+.++ .++++.+.+.|.-+||+||-+=+...
T Consensus 130 ~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlel-la~l~~la~sGaQ~IiATHSPiLlAi 193 (233)
T COG3910 130 MSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLEL-LAILRDLADSGAQIIIATHSPILLAI 193 (233)
T ss_pred hccchHHHHHHHHHhccCceEEecCccccCCHHHHHHH-HHHHHHHHhcCCeEEEEecChhheeC
Confidence 34455556666677899999999999999999888888 78888899999999999998777554
No 428
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=98.92 E-value=8.8e-10 Score=129.37 Aligned_cols=355 Identities=14% Similarity=0.082 Sum_probs=206.0
Q ss_pred ccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc--------------ccCCccHHHHHHHHHhccCCc
Q 002090 306 CLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV--------------TCSIPEFTCLVKLLELREANH 371 (968)
Q Consensus 306 sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~--------------l~~i~dlrrL~~~l~~p~a~~ 371 (968)
+|-...++++.|.+|.|.|+.|.-.|+. +. +.|++|.+.+..+ |..+||+.|+..+|- .+|+
T Consensus 313 ~L~~~~LN~c~t~~G~rll~~w~~qpL~-~~-~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~--~~~L 388 (902)
T KOG0219|consen 313 NLALSLLNHCKTLQGERLLRQWLKQPLR-DI-DRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLM--KANL 388 (902)
T ss_pred hhhHHHHhhcccccchhhhhhhhhcchH-HH-HHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhh--hcch
Confidence 4444368999999999999999999999 88 9999999998875 889999999999998 8899
Q ss_pred ccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhhchhhhhhccCCchhhhcccCCCchh
Q 002090 372 IEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSE 451 (968)
Q Consensus 372 ~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~i~~~i~l~~e~~~~~~~~~~I~~~ 451 (968)
.|..+|-.....+ |.+-..|.++..+.. -.+...+-....++......+.+.+.+ +.....--.|+.+
T Consensus 389 ~d~~r~yq~~~~l------~~~~~~l~~~~~~~~--~ll~~~l~~~~~~~~kf~~~ve~t~D~----da~ee~ey~VR~e 456 (902)
T KOG0219|consen 389 QDVNRIYQAAKLL------PTVVQVLISLSESHN--RLLKSPLTEHLKKLEKFQEMVETTVDL----DAEEENEYRVRVD 456 (902)
T ss_pred HHHHHHHHHHHHh------HHHHHHHHhhhhhhh--hhhhhhhhhhhhhHHHHHHHHHHHhhH----hHHhcCcEEEecc
Confidence 9988888777777 666555554433210 000112222233333333444444432 1122333567779
Q ss_pred HHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceee-ecccccc
Q 002090 452 FFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWF-KGKKFRP 530 (968)
Q Consensus 452 ~~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l-~~~~~~~ 530 (968)
|++++- . +.+.+++++.-...+..-.+.|+ +.-.+-+--..+.+-+.--.|..+......- ...|.++
T Consensus 457 FdeeL~-e---------Lrq~LdeL~~~m~~~hkrv~~dl-~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eL 525 (902)
T KOG0219|consen 457 FDEELQ-E---------LREKLDELERKMEKLHKKVSADL-GLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTEL 525 (902)
T ss_pred cCHHHH-H---------HHHHHHHHHHHHHHHHHHHHhhc-CCCcccceeeeccchhheeeeeeehhhhHhhccCCceEE
Confidence 988874 2 45566777777777777777776 3322111100011100001111111110000 0122222
Q ss_pred ccccCCCCccccccccccccc-CCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 531 TVWASTPGEEQIKQLKPAVDS-KGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLL 609 (968)
Q Consensus 531 ~~~~~~~~~~~I~~l~~~~s~-~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~ll 609 (968)
+. .+.++ .++. +-... ..+-.....+|+..+..+-.++..+...+..-+......++.+|.++
T Consensus 526 st-----qK~GV-----~FTtk~L~sl------N~e~~~~qk~Y~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~ 589 (902)
T KOG0219|consen 526 ST-----QKGGV-----KFTTKKLSSL------NDEFMSLQKEYDEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFV 589 (902)
T ss_pred EE-----eeCcE-----EEEhhhHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhhe
Confidence 21 11122 1110 00111 12334455668899999999999999999999999899999999999
Q ss_pred HHHHHHhhhhhhcccCCcccCccccc--cccCcceeEEc-CCCccccccCCCceeeeeEee----ceEEEEEecCCCCcc
Q 002090 610 VIGKALFAHVSEGRRRKWVFPALKDI--ELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKS 682 (968)
Q Consensus 610 a~Adal~~~a~~a~~~~~~~P~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKS 682 (968)
++|.+.-....--.+.+ ..|.=... .++++||+.+. +-+|+.-.-..=+...+++.+ +.---.|+++++|++
T Consensus 590 SFa~~st~a~~pYvRP~-~l~~gs~rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi 668 (902)
T KOG0219|consen 590 SFAHAATVAPIPYVRPK-LLPLGSKRLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVI 668 (902)
T ss_pred eehhhcccCCCCccCcc-ccccchhHHHHHhcccchhhccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHH
Confidence 98876542211111111 12221111 34577887664 334432110000122344444 223467999999999
Q ss_pred hHHHHHHhHHHhhhcCceeccC
Q 002090 683 SLLRSICAASLLGICGLMVPAE 704 (968)
Q Consensus 683 Tllk~i~gl~~la~~g~~vp~~ 704 (968)
|||.+|+-++.+++.+..++..
T Consensus 669 ~lmAQIGcfVPce~A~i~IvD~ 690 (902)
T KOG0219|consen 669 VLMAQIGCFVPCESATISIVDG 690 (902)
T ss_pred HHHHHhCCceehhhcCCchhhH
Confidence 9999999999998888877754
No 429
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=7.7e-09 Score=131.70 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=98.7
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccCcCCcc---
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASIP--- 709 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~~~~~~--- 709 (968)
+...|++++++ |+.++|+|..|||||||+.++-.++. +...-+.+||++..+.
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 34789999999 79999999999999999999988752 2222346899865431
Q ss_pred -----hH-----HHHHh------------h--cCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 -----YF-----DAIML------------H--MKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 -----~~-----~~i~~------------~--~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
.+ ++|.. . -+.+..+..+-+.||+|++|+..+.++ ..+.++++|||.|++.|+..
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHH
Confidence 11 12221 1 134445567778999999998887766 78999999999999999966
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
-.-|-..|.+.++ +||||.+-|.++-.-
T Consensus 1311 D~lIQ~tIR~~F~--dcTVltIAHRl~TVm 1338 (1381)
T KOG0054|consen 1311 DALIQKTIREEFK--DCTVLTIAHRLNTVM 1338 (1381)
T ss_pred HHHHHHHHHHHhc--CCeEEEEeeccchhh
Confidence 4444344444443 699999999766543
No 430
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.82 E-value=2.3e-08 Score=115.70 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=99.4
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH---------------------hhhcCceeccCcCCcc------
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------LGICGLMVPAESASIP------ 709 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~---------------------la~~g~~vp~~~~~~~------ 709 (968)
.++|+|| ||+++|.|-=|||+|-++++|.|+-- ......|||.+...-+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 4567777 89999999999999999999999631 1222346666543211
Q ss_pred hHH--------------------------HHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 710 YFD--------------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 710 ~~~--------------------------~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
..+ .....++.. .+.....+++|+|-||...+.+- +++|+++||||||+|.|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 111 111222221 23345567899998887776665 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeccChh-hhhcccccccc
Q 002090 762 TAKGTCIAGSIIETLDNIGCLGIVSTHLHG-IFSLPLKIKNA 802 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e-l~~~~~~~~~~ 802 (968)
.-....| ..+++.+.++|.+||++|-+++ +..++++.-.+
T Consensus 434 VGAK~eI-y~li~~lA~~G~ail~iSSElpEll~~~DRIlVm 474 (500)
T COG1129 434 VGAKAEI-YRLIRELAAEGKAILMISSELPELLGLSDRILVM 474 (500)
T ss_pred cchHHHH-HHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEE
Confidence 9888888 8888889999999998888664 44566554333
No 431
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.5e-08 Score=118.44 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=62.2
Q ss_pred ccCCccchHHHHHHHHHHHH----hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 724 PADGKSSFQVEMSEIRSIVT----ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 724 ~~~~~s~fs~~~~~~~~il~----~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
+.+...|+|+|..|+..++. .++.+.|.||||||.||-+.+-..+ ..++..|.+.|.|||++.|+++....++..
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kL-l~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKL-LEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 44566789988887665443 3788899999999999999998888 777788888999999999999998877654
No 432
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.3e-08 Score=115.38 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=89.8
Q ss_pred cccCCCc-eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-hhhcCceeccCc-CC-----c------------
Q 002090 653 FDAAEGS-AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGICGLMVPAES-AS-----I------------ 708 (968)
Q Consensus 653 ~~~~~~~-~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-la~~g~~vp~~~-~~-----~------------ 708 (968)
|.+..+. +....+++ ....+++|+||+||||++|++.+-.- ...+....|... .. +
T Consensus 370 f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~ 449 (582)
T KOG0062|consen 370 FEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDF 449 (582)
T ss_pred ccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHH
Confidence 3344344 44455555 46789999999999999999977321 100000011000 00 0
Q ss_pred ----------chHHHHHhhcCCCCCcc-CCccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 002090 709 ----------PYFDAIMLHMKSYDSPA-DGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776 (968)
Q Consensus 709 ----------~~~~~i~~~~~~~d~~~-~~~s~fs~~~~~~~~il~-~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l 776 (968)
..+..-+..+|+...+. ....++|+|++-...+++ ...+|.|++|||||+.||...- .++.+.+
T Consensus 450 ~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl----~AL~~Al 525 (582)
T KOG0062|consen 450 MEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSL----GALAKAL 525 (582)
T ss_pred HHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHH----HHHHHHH
Confidence 01123455667665543 446789999986555444 4899999999999999999663 5556666
Q ss_pred HhcCcEEEEeccChhhhhc
Q 002090 777 DNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 777 ~~~g~~vl~~TH~~el~~~ 795 (968)
+..+-.||++|||.++...
T Consensus 526 ~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 526 KNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred HhcCCcEEEEECcHHHHhh
Confidence 6667789999999999764
No 433
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.76 E-value=1.3e-08 Score=102.97 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=89.7
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH----------------------------HhhhcCceeccC
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS----------------------------LLGICGLMVPAE 704 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~----------------------------~la~~g~~vp~~ 704 (968)
|...+.+.+++ |++-+++|.+|||||-..|.|+|.. +.++..++++++
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 33467788887 8999999999999999999999984 123333344333
Q ss_pred cCC---------------cc-------------h----HHHHHhhcCCCCCccCCc---cchH-HHHHHHHHHHHhCCCC
Q 002090 705 SAS---------------IP-------------Y----FDAIMLHMKSYDSPADGK---SSFQ-VEMSEIRSIVTATTSR 748 (968)
Q Consensus 705 ~~~---------------~~-------------~----~~~i~~~~~~~d~~~~~~---s~fs-~~~~~~~~il~~a~~~ 748 (968)
... +| + .-.++.++|..|.-.-.. -.+. +|-++...+++.|..|
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqP 177 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQP 177 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCC
Confidence 211 00 0 012445556554322111 1111 2333344456668999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 749 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 749 ~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
.|+|.||||+.++|.....|...+.+.-...|.++++++||+...
T Consensus 178 rLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~i 222 (330)
T COG4170 178 RLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI 222 (330)
T ss_pred ceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHH
Confidence 999999999999999988885555554445789999999987654
No 434
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.74 E-value=7.9e-08 Score=102.28 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=44.1
Q ss_pred chHHHHHHHHHH---H--HhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 730 SFQVEMSEIRSI---V--TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 730 ~fs~~~~~~~~i---l--~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
.+|+|++.+..+ + ....+.+++|||||.++||......++..+. .+.+ ++-+|++||..++...++.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~-~~~~-~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLK-ELSK-QSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHH-HHTT-TSEEEEE-S-HHHHTT-SE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-ccccccccccccccccccc
Confidence 778888765432 2 2367789999999999999988877744444 4433 4789999999998877653
No 435
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.1e-08 Score=112.73 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=82.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH--HhhhcCceec-cC------cCC----------c-----
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LLGICGLMVP-AE------SAS----------I----- 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~--~la~~g~~vp-~~------~~~----------~----- 708 (968)
.++-.+.+.++ |+.++++||||-|||||||.|+.-. +...+..... ++ .+. +
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLee 354 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEE 354 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHH
Confidence 34555555555 8999999999999999999998642 1122211110 00 000 0
Q ss_pred -----------------------------------chHHHHHhhcCCCCCc-cCCccchHHHHHHHHHHHH-hCCCCcEE
Q 002090 709 -----------------------------------PYFDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVT-ATTSRSLV 751 (968)
Q Consensus 709 -----------------------------------~~~~~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~-~a~~~~Ll 751 (968)
+...+|+.-+|....+ .+.-..||+|.+-...+.+ ....|.|+
T Consensus 355 e~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLL 434 (807)
T KOG0066|consen 355 EAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLL 434 (807)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceee
Confidence 0111233333433222 2233456776664444443 37899999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 752 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 752 LlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+|||||++||... + ..+-.+|..-..|.+++|||..+.+
T Consensus 435 MLDEPTNHLDLNA---V-IWLdNYLQgWkKTLLIVSHDQgFLD 473 (807)
T KOG0066|consen 435 MLDEPTNHLDLNA---V-IWLDNYLQGWKKTLLIVSHDQGFLD 473 (807)
T ss_pred eecCCccccccce---e-eehhhHHhhhhheeEEEecccchHH
Confidence 9999999999854 2 3345666666789999999988765
No 436
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.66 E-value=6.7e-08 Score=126.49 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=62.3
Q ss_pred CccCCccchHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 723 SPADGKSSFQVEMSEIRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 723 ~~~~~~s~fs~~~~~~~~il~~a----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
.+.+...++|+|..|...++... ..+.|+||||||.||++.+-..+ ..+++.|.+.|.|||++.|++++...++.
T Consensus 1692 ~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~L-l~~l~~L~~~g~tvivieH~~~~i~~aD~ 1770 (1809)
T PRK00635 1692 PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSAL-LVQLRTLVSLGHSVIYIDHDPALLKQADY 1770 (1809)
T ss_pred eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHH-HHHHHHHHhcCCeEEEEeCCHHHHHhCCE
Confidence 34566678999888877666553 34689999999999999998888 56677788999999999999999888775
Q ss_pred c
Q 002090 799 I 799 (968)
Q Consensus 799 ~ 799 (968)
.
T Consensus 1771 i 1771 (1809)
T PRK00635 1771 L 1771 (1809)
T ss_pred E
Confidence 4
No 437
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.62 E-value=1e-07 Score=104.12 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=61.9
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcC-CcchHHHHHhhcC-CCC-CccCCccch-----HHHHHHHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA-SIPYFDAIMLHMK-SYD-SPADGKSSF-----QVEMSEIRS 740 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~-~~~~~~~i~~~~~-~~d-~~~~~~s~f-----s~~~~~~~~ 740 (968)
.-++|+||||||||||++.+++++.....-..+..... .+..-.++...+. ..+ .+....+-+ ..+| .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~----~ 187 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGM----M 187 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHH----H
Confidence 46799999999999999999887643211111111110 0000012211111 111 111100111 1122 2
Q ss_pred HHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 741 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 741 il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
.+..+.+|+++|+|||++. ....++++.+. .|.++|++||+.++.+.
T Consensus 188 ~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHH
Confidence 2223579999999999742 22356666665 59999999998777544
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.53 E-value=4.1e-07 Score=97.52 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=67.6
Q ss_pred ceEEEEEecCCCCcchH-HHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCC-------Ccc--CCccchHHH--H
Q 002090 668 QSLFLLTGPNGGGKSSL-LRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD-------SPA--DGKSSFQVE--M 735 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTl-lk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d-------~~~--~~~s~fs~~--~ 735 (968)
|++++|+||||+||||| ++.+++.......+.|+..+...-....++ ..+|... .+. .....++.. .
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 78999999999999999 677777654444445555433222222211 2222210 100 000011111 1
Q ss_pred H-HHHHHHHh--CCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 736 S-EIRSIVTA--TTSRSLVLIDEICRGT----ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 736 ~-~~~~il~~--a~~~~LlLlDEp~~Gl----D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
. .+..++.. ..+|+++++|||++++ |+.....+ ..+++.+++.|.++++ ||+..
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~~g~tvi~-t~~~~ 163 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISSLNKVIIL-TANPK 163 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHhCCCEEEE-Eeccc
Confidence 1 12223333 3589999999999999 66555555 5566777777886655 55543
No 439
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=2.2e-07 Score=102.21 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHh----------CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 730 SFQVEMSEIRSIVTA----------TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 730 ~fs~~~~~~~~il~~----------a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
..|.++++...++.. ..+|+++|||||++++|+.....+. +.+.+.+. ++++||+.+.
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~----~~l~~~~q-~ii~~~~~~~ 250 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL----DAIEGRVQ-TFVTTTDLAD 250 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHH----HHhhcCCC-EEEEeCCchh
Confidence 357788876555433 3799999999999999998866653 33333343 5555554443
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.39 E-value=1.3e-06 Score=90.11 Aligned_cols=121 Identities=18% Similarity=0.172 Sum_probs=70.6
Q ss_pred EEEEEecCCCCcchHHHHHHhHHH-hhhcCceeccCcCCcchHHHHHhhcCCC----------CCccCCccchHHHHHH-
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASL-LGICGLMVPAESASIPYFDAIMLHMKSY----------DSPADGKSSFQVEMSE- 737 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~-la~~g~~vp~~~~~~~~~~~i~~~~~~~----------d~~~~~~s~fs~~~~~- 737 (968)
+++|.||.|+|||||.-.++--.. -.....|+..+... ..+.+.+..+|.. .........++.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~-~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP-EELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 368999999999999887755432 12233344333221 1111122222221 1112222333444433
Q ss_pred ----HHHHHH--hCCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 738 ----IRSIVT--ATTSRSLVLIDEICRGTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 738 ----~~~il~--~a~~~~LlLlDEp~~GlD---~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
+..+.+ ...+|+++++|||++.+| +.....+ ..+++.+++.|.++|+++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHCCCEEEEEeccccC
Confidence 122222 246899999999999998 5444444 66777888889999999998765
No 441
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.37 E-value=8.2e-07 Score=94.94 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHh---CCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 730 SFQVEMSEIRSIVTA---TTSR-SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 730 ~fs~~~~~~~~il~~---a~~~-~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
.+|.|++++..++.. +... .++++|||-++|.|.....++ .++..+.+.+.-+|++||...+.
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeCccchhc
Confidence 448899987554433 3333 999999999999998877775 44444444578999999987764
No 442
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.35 E-value=3.1e-06 Score=84.57 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=69.1
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHH--HHhhcCCCCCcc--CCc-cch-HHHHHHHHHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDA--IMLHMKSYDSPA--DGK-SSF-QVEMSEIRSIV 742 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~--i~~~~~~~d~~~--~~~-s~f-s~~~~~~~~il 742 (968)
+++|+||||+||||+++.+++..... ....|+..+......... .+......+... ... ... .....+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 37899999999999999998876431 122233333322211111 111111111110 000 111 11222333444
Q ss_pred HhCCCCcEEEEeCCCCCCCHH---------HHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 743 TATTSRSLVLIDEICRGTETA---------KGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 743 ~~a~~~~LlLlDEp~~GlD~~---------~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
....++.++++||+++-++.. ........+.+.+++.++++|+++|...-
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 457899999999999544332 22344477777777789999999997653
No 443
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=1.4e-06 Score=109.36 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=67.1
Q ss_pred HhhcCCCCC-ccCCccchHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 715 MLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 715 ~~~~~~~d~-~~~~~s~fs~~~~~~~~il~~-a~~--~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
+..+++... +.+...++|+|++|+..+++. +.+ |.++||||||+|||+.+...+ ..+++.+++.|.|||++||++
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L-~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERL-INTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHH-HHHHHHHHhCCCEEEEEECCH
Confidence 455666543 577889999999998887766 444 489999999999999998888 666666778899999999999
Q ss_pred hhhhccccc
Q 002090 791 GIFSLPLKI 799 (968)
Q Consensus 791 el~~~~~~~ 799 (968)
+....+++.
T Consensus 550 ~~i~~aD~v 558 (924)
T TIGR00630 550 ETIRAADYV 558 (924)
T ss_pred HHHhhCCEE
Confidence 987755543
No 444
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.32 E-value=1.1e-06 Score=110.55 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=68.7
Q ss_pred HHhhcCCCCC-ccCCccchHHHHHHHHHHHHh-CCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 714 IMLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 714 i~~~~~~~d~-~~~~~s~fs~~~~~~~~il~~-a~~~--~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
.+..+|+... +.....++|+|++|...+++. +.+| .++||||||+|||+.+...+ ..+++.+++.|.|||++||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L-~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRL-IETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCC
Confidence 4566777643 678889999999998887776 4554 89999999999999998888 66666678889999999999
Q ss_pred hhhhhccccc
Q 002090 790 HGIFSLPLKI 799 (968)
Q Consensus 790 ~el~~~~~~~ 799 (968)
++....+++.
T Consensus 551 ~~~i~~aD~v 560 (943)
T PRK00349 551 EDTIRAADYI 560 (943)
T ss_pred HHHHHhCCEE
Confidence 9987655443
No 445
>PRK13695 putative NTPase; Provisional
Probab=98.26 E-value=2.6e-06 Score=87.32 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
..+|+++++|||+. ++..+ ..+...+.+.+ +.+.++|+++|+.......+
T Consensus 94 l~~~~~lllDE~~~-~e~~~-~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~ 143 (174)
T PRK13695 94 LEEADVIIIDEIGK-MELKS-PKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQ 143 (174)
T ss_pred cCCCCEEEEECCCc-chhhh-HHHHHHHHHHH-hCCCeEEEEECchhhHHHHH
Confidence 57899999999742 33322 23333444444 67899999999865544433
No 446
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.23 E-value=1.9e-06 Score=95.89 Aligned_cols=128 Identities=12% Similarity=0.128 Sum_probs=85.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh-------cCceeccCcCC-----cc---------------hHHHHHhhcCC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESAS-----IP---------------YFDAIMLHMKS 720 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~-------~g~~vp~~~~~-----~~---------------~~~~i~~~~~~ 720 (968)
.+++..+|.||-|||||+++++|..-... ..++-|+.... .. +...+...+..
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i 446 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI 446 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH
Confidence 47899999999999999999999542221 22334443211 00 01122223333
Q ss_pred CCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 721 YDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 721 ~d~~~~~~s~fs~~~~~-~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
++-+.+...++|++..| .+.++..-...++.++|||.+-+|.+.+...+..+.+.+...+.|..++.||.-.+.+
T Consensus 447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh
Confidence 44445555677776555 5556666677899999999999999777666566666666778899999998777654
No 447
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=98.15 E-value=0.00011 Score=85.87 Aligned_cols=96 Identities=15% Similarity=0.261 Sum_probs=76.0
Q ss_pred eeechhhhc--ccCCCC--C--CCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc-----------
Q 002090 288 LHLGTATQI--GAIPTE--G--IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV----------- 350 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~~--~--~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~----------- 350 (968)
|.|+..|.. +++.+. + ..||+++ +|+|+|.-|.|.||.|...|+. ++ ..|++|+++++..
T Consensus 458 Mtls~ntLq~Leif~nqtd~~~kGSLfwv-ldhT~TsfG~RmLr~WvtkPLv-d~-~~I~eRLDAVeeitshssnS~vf~ 534 (1070)
T KOG0218|consen 458 MTLSPNTLQSLEIFTNQTDGSEKGSLFWV-LDHTRTSFGLRMLREWVTKPLV-DV-HQIEERLDAVEEITSHSSNSIVFE 534 (1070)
T ss_pred eeechhhhhceeeeeecCCCCcccceEEE-eccchhHHHHHHHHHHHhcccc-cH-HHHHHHHHHHHHHHhcccchHHHH
Confidence 677666655 666662 2 3499999 9999999999999999999999 99 9999999999865
Q ss_pred -----ccCCccHHHHHHHHHhccCCc-ccHH-HHHHHHHHHHH
Q 002090 351 -----TCSIPEFTCLVKLLELREANH-IEFC-RIKNVLDEILH 386 (968)
Q Consensus 351 -----l~~i~dlrrL~~~l~~p~a~~-~d~~-~I~~rl~~v~~ 386 (968)
+...||+.|=..||-.+.++| .++- -++.-..++.+
T Consensus 535 si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~ 577 (1070)
T KOG0218|consen 535 SINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSH 577 (1070)
T ss_pred HHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 777899999999999999988 3333 34444444433
No 448
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=98.15 E-value=4.8e-06 Score=93.21 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=76.0
Q ss_pred chHHHHHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCccccccccccc
Q 002090 334 YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKID 413 (968)
Q Consensus 334 ~sl~~~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~d 413 (968)
+||++.+|+|.|++|. |+|+.|+.+| +.|...|.+|++.|++|.+++.+...++..+..++ |
T Consensus 2 ~sL~~~l~~~~T~~G~--------r~L~~wl~~P---l~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~-------D 63 (308)
T smart00533 2 GSLFELLNHTKTPMGK--------RLLRRWLLQP---LLDLKEINERLDAVEELVENPELRQKLRQLLKRIP-------D 63 (308)
T ss_pred CCHHHHHccCCCcHHH--------HHHHHHHHhh---CCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCC-------c
Confidence 4889999999999999 9999999999 99999999999999999999999999988888776 9
Q ss_pred HHHHHHHHHHHhhchhhhhhc
Q 002090 414 FETLVEECRLASVRIGEMISL 434 (968)
Q Consensus 414 lerl~~~~~~~~~~i~~~i~l 434 (968)
+++++.++......+++++.+
T Consensus 64 i~~~l~~~~~~~~~~~el~~l 84 (308)
T smart00533 64 LERLLSRIERGRASPRDLLRL 84 (308)
T ss_pred HHHHHHHHHcCCCCHHHHHHH
Confidence 999999998777777777765
No 449
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.13 E-value=1.1e-05 Score=86.84 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=69.2
Q ss_pred eeceEEEEEecCCCCcchHHHHHHhH-HHhhhcCceeccCcCCcchHHHHHhhcCC--CCCccC-----------Cccch
Q 002090 666 DMQSLFLLTGPNGGGKSSLLRSICAA-SLLGICGLMVPAESASIPYFDAIMLHMKS--YDSPAD-----------GKSSF 731 (968)
Q Consensus 666 ~lg~~~~I~GpNGsGKSTllk~i~gl-~~la~~g~~vp~~~~~~~~~~~i~~~~~~--~d~~~~-----------~~s~f 731 (968)
.-|.++.|+|++|+|||||..+++-- +.....+.|+..+...-....+ +..++. .+.+.. .....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccccC
Confidence 33789999999999999999998532 2223444555554332222221 122221 111001 11122
Q ss_pred HHHHHHHHHHHHh---CCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 732 QVEMSEIRSIVTA---TTSRSLVLIDEICRGTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 732 s~~~~~~~~il~~---a~~~~LlLlDEp~~GlD---~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
+.++.++...+.. ..+++++++|||++.+| ...-..+.. .+..+++.|.++++++|....
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCcC
Confidence 3344444443332 25899999999996544 433233322 234456678999999997543
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.11 E-value=2.2e-05 Score=75.43 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=60.7
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhh-cCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh--C
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA--T 745 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~-~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~--a 745 (968)
..++|+||+|+||||+++.++....... ...++..+........... ..............+ ....+... .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASGSGEL-RLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCCCHHH-HHHHHHHHHHh
Confidence 5689999999999999999987654332 1122222221111111100 000001111111111 11222222 3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-----HHHHHHHhcCcEEEEeccC
Q 002090 746 TSRSLVLIDEICRGTETAKGTCIAG-----SIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 746 ~~~~LlLlDEp~~GlD~~~~~~i~~-----~ll~~l~~~g~~vl~~TH~ 789 (968)
..++++++||+.+-.+......... .........+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 3479999999999999866554432 1233333457788888885
No 451
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=98.07 E-value=4.6e-06 Score=87.28 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=66.9
Q ss_pred CccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc-------------ccCCccHHHHHHHHHhccCCc
Q 002090 305 PCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV-------------TCSIPEFTCLVKLLELREANH 371 (968)
Q Consensus 305 ~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~-------------l~~i~dlrrL~~~l~~p~a~~ 371 (968)
.||++. +++|.|.+|.|+||+|++.|+. +. +.|++|++.+..| +..++|++++..++..+.+++
T Consensus 20 ~sL~~~-ln~t~T~~Gkr~L~~~l~~P~~-d~-~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~~di~~~l~~l~~~~~~~ 96 (204)
T PF05192_consen 20 GSLFSL-LNRTSTPMGKRLLRSWLLQPLT-DI-EEIEKRQDAVEEFLQNEELREELRSILKKIPDIERILKRLRSGRASP 96 (204)
T ss_dssp TSHHHH-H---SSHHHHHHHHHHHHS-BS--H-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTC-SHHHHHHHHHTTHHHH
T ss_pred CcHHHH-HhcCCChHHHHHHHHHHhCccc-hH-HHHHHHHHHHHHHHHhhhHhhhhhhhhhccchHHHHHHHHHHhhcCh
Confidence 499999 8889999999999999999999 88 9999999999876 789999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 002090 372 IEFCRIKNVLDEI 384 (968)
Q Consensus 372 ~d~~~I~~rl~~v 384 (968)
.++..+...+..+
T Consensus 97 ~~~~~l~~~l~~~ 109 (204)
T PF05192_consen 97 QDLLKLYKTLRSI 109 (204)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999999
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.00 E-value=1.9e-05 Score=82.71 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=58.6
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC-cCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 747 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~-~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~ 747 (968)
.+++|+||+||||||+++.+++.......+..+--+ ...+.. ......+. ...+.....+|... +...+ ..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~~~~~~i~-q~~vg~~~~~~~~~---i~~aL--r~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-ESKRSLIN-QREVGLDTLSFENA---LKAAL--RQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-cCccceee-ecccCCCccCHHHH---HHHHh--cCC
Confidence 468999999999999999987654322222211111 110000 00000000 00111111233222 11112 458
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 748 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
|+++++||+. |+.. +..+++. ...|..++.++|..+..+.
T Consensus 75 pd~ii~gEir---d~e~----~~~~l~~-a~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 75 PDVILVGEMR---DLET----IRLALTA-AETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred cCEEEEcCCC---CHHH----HHHHHHH-HHcCCEEEEEecCCcHHHH
Confidence 9999999995 5533 2444443 4568999999998776543
No 453
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.92 E-value=5.8e-05 Score=86.43 Aligned_cols=146 Identities=15% Similarity=0.199 Sum_probs=100.4
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh----------------------hcCceeccCcCC---
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------ICGLMVPAESAS--- 707 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la----------------------~~g~~vp~~~~~--- 707 (968)
.+...+.++|| |++++|.|-.|-|-+.|+..|+|+...+ ....|||.+...
T Consensus 269 ~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 269 RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 34577889999 8999999999999999999999995211 122366765421
Q ss_pred ---cchHH----------------------------HHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 708 ---IPYFD----------------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 708 ---~~~~~----------------------------~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
++..+ ++...+.+. .+......++|+|-+|...+.+- ..+|+|+|+.
T Consensus 349 v~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~ 428 (501)
T COG3845 349 VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAA 428 (501)
T ss_pred ccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEc
Confidence 11111 233333333 33344456788887776655544 7899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh-hhccccccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAA 803 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el-~~~~~~~~~~~ 803 (968)
+||+|+|......|...+++ .++.|+.|+++|-+++. ..++++...+.
T Consensus 429 qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~dLDEil~lsDrIaVi~ 477 (501)
T COG3845 429 QPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIY 477 (501)
T ss_pred CCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehhHHHHHHhhheeeeee
Confidence 99999999777777555555 56789999999988754 45666544433
No 454
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.90 E-value=4.8e-05 Score=88.58 Aligned_cols=144 Identities=11% Similarity=0.094 Sum_probs=81.3
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceec--cCcCCcchHHHHHhh-cCC---CCCcc-C
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP--AESASIPYFDAIMLH-MKS---YDSPA-D 726 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp--~~~~~~~~~~~i~~~-~~~---~d~~~-~ 726 (968)
+..+++++ + |++++|+|+||+|||||+++|++.... ..|.+.- .....+ .++... ++. ...+. .
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev---~e~~~~~l~~~~l~r~v~vv 219 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREV---REFIERDLGPEGLKRSIVVV 219 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccH---HHHHHhhcChhhhcCeEEEE
Confidence 45566666 5 899999999999999999999886432 1222111 011111 111111 111 11110 1
Q ss_pred CccchHHHHHHHHH--------HHHhCCCCcEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHHh-
Q 002090 727 GKSSFQVEMSEIRS--------IVTATTSRSLVLID-----------------EI--CRGTETAKGTCIAGSIIETLDN- 778 (968)
Q Consensus 727 ~~s~fs~~~~~~~~--------il~~a~~~~LlLlD-----------------Ep--~~GlD~~~~~~i~~~ll~~l~~- 778 (968)
..+.-+..++-.+. -++.....=|+++| || ++|+||.....+ ..+++.+..
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcCC
Confidence 11222333332221 22224556677888 86 789999776666 677777763
Q ss_pred -cCc-----EEEEeccChhhhhccccccccccceeE
Q 002090 779 -IGC-----LGIVSTHLHGIFSLPLKIKNAAYKAMG 808 (968)
Q Consensus 779 -~g~-----~vl~~TH~~el~~~~~~~~~~~~~~~~ 808 (968)
.|. ||++.|||++. ..++....+..+++.
T Consensus 299 ~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Iv 333 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFV 333 (438)
T ss_pred CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEE
Confidence 675 99999999874 455544444444443
No 455
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.90 E-value=6.9e-05 Score=90.96 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHHHh-CC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccc
Q 002090 729 SSFQVEMSEIRSIVTA-TT----SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAA 803 (968)
Q Consensus 729 s~fs~~~~~~~~il~~-a~----~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~ 803 (968)
..+|+|++++..++.. +. +|+++|||||++|+|+.....+.. ++..+.+ +.+||++||++.++..+++.-.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEEChHHHHHhcCeEEEEE
Confidence 4678888886655433 33 479999999999999988888854 5555654 899999999999877554332211
Q ss_pred cceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcC---CCHHHHHHHHHHHH
Q 002090 804 YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG---VPETIIQRAEDLYI 854 (968)
Q Consensus 804 ~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~g---lp~~vi~rA~~~~~ 854 (968)
. + ..++. |+.-..-..+.----++|+++| +.+.-++.|++++.
T Consensus 517 k---~--~~~~~---t~s~i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll~ 562 (563)
T TIGR00634 517 K---E--GLDGR---TATRVRPLSGEERVAELARMLAGLEKSDLTLAHAQELLE 562 (563)
T ss_pred E---c--cCCCc---EEEEEEECCccHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 1 1 11221 2222222233345578999983 35777899998864
No 456
>PRK10869 recombination and repair protein; Provisional
Probab=97.81 E-value=9.8e-05 Score=89.08 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccccc
Q 002090 730 SFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 804 (968)
Q Consensus 730 ~fs~~~~~~~~il~~-a----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~ 804 (968)
.+|+|++++..++.. + .+|+++|+|||++|+|+..+..+ ..++..+.+ +.+||++||++.++..++..-.+..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v-~~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVV-GKLLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHHhCCEEEEEec
Confidence 567787775554433 3 36899999999999999887777 445555654 6899999999998876554322211
Q ss_pred ceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcC---CCHHHHHHHHHHHH
Q 002090 805 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG---VPETIIQRAEDLYI 854 (968)
Q Consensus 805 ~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~g---lp~~vi~rA~~~~~ 854 (968)
...++. |+.-..-..+..---++|+++| +.+.-+..|++++.
T Consensus 508 -----~~~~~~---t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl~ 552 (553)
T PRK10869 508 -----ETDGGM---TETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELLA 552 (553)
T ss_pred -----cccCCe---eeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 111221 2222222233455678999993 35777899998864
No 457
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=2.9e-05 Score=97.72 Aligned_cols=139 Identities=20% Similarity=0.247 Sum_probs=91.6
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------hhcCc----eec--------cCcCCcc-----
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------GICGL----MVP--------AESASIP----- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------a~~g~----~vp--------~~~~~~~----- 709 (968)
..+++|++. |+++.+.||-|||||||+|.++|...- .-.|. ++| +....+|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 468888887 899999999999999999999998510 00010 111 1111000
Q ss_pred ---------------------------hHHHHHhhcCCCCCcc-----CCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 710 ---------------------------YFDAIMLHMKSYDSPA-----DGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 710 ---------------------------~~~~i~~~~~~~d~~~-----~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
..|.+..-+|.....+ ....-.|+|+++...+... +.+++.+.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 1223334444432221 1223456677766665554 788999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh--hhhhccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPL 797 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~--el~~~~~ 797 (968)
|+|||......++..+....+..+.|++++=|+. +..++.+
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD 330 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFD 330 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhh
Confidence 9999999999997777777667788999888864 4444444
No 458
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.74 E-value=3.2e-05 Score=86.70 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=58.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHH-HHHhhcCCCCCccCCccchHHHHHHHHHHHHhCC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD-AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~-~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~ 746 (968)
++.++|+||+|||||||++++++.... ..+..+-.+...+.... +.. .+.... ...+.. ...+.+.... ....
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~-~~~iv~ied~~El~~~~~~~~-~l~~~~-~~~~~~--~~~~~~~l~~-~Lr~ 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPK-DERIITIEDTREIFLPHPNYV-HLFYSK-GGQGLA--KVTPKDLLQS-CLRM 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCc-cccEEEEcCccccCCCCCCEE-EEEecC-CCCCcC--ccCHHHHHHH-HhcC
Confidence 467899999999999999999765321 11111111111110000 000 000000 000111 1122222211 1257
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcc
Q 002090 747 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 747 ~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
+|+++++|||.. ... ..+++.+...+..++.++|..+..+..
T Consensus 218 ~pd~ii~gE~r~-------~e~-~~~l~a~~~g~~~~i~T~Ha~~~~~~~ 259 (308)
T TIGR02788 218 RPDRIILGELRG-------DEA-FDFIRAVNTGHPGSITTLHAGSPEEAF 259 (308)
T ss_pred CCCeEEEeccCC-------HHH-HHHHHHHhcCCCeEEEEEeCCCHHHHH
Confidence 899999999995 122 455666654334569999987765543
No 459
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.70 E-value=3.4e-05 Score=86.19 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=51.6
Q ss_pred chHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 730 SFQV-EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 730 ~fs~-~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
.+|+ |.++.+.++..+...++.++|||.+-||...+...+ ..++.+.....-+|++.||+...++...
T Consensus 213 ~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA-~~IRsl~~p~~YiIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 213 QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA-ITIRSLINPDRYIIVVEHDLSVLDYLSD 281 (592)
T ss_pred hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH-HHHHHhhCCCCeEEEEEeechHHHhhhc
Confidence 4444 444455555668899999999999999998888774 4555566667899999999999876543
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.65 E-value=9.7e-05 Score=85.46 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=79.8
Q ss_pred CceeeeeE-ee--ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc--eeccCcCCcc-hHHHHHhhcCCCCC-ccCCccc
Q 002090 658 GSAVHNTV-DM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGL--MVPAESASIP-YFDAIMLHMKSYDS-PADGKSS 730 (968)
Q Consensus 658 ~~~v~~~i-~l--g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~--~vp~~~~~~~-~~~~i~~~~~~~d~-~~~~~s~ 730 (968)
+..+++.+ .+ |+.++|.|+||+|||||++++++.... ..|. ++.+...... ++...+..-+.... +....+.
T Consensus 143 GiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd 221 (432)
T PRK06793 143 GIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSD 221 (432)
T ss_pred CCEEEeccceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCC
Confidence 44555553 22 789999999999999999999887532 1121 1222222221 11222222222211 2233456
Q ss_pred hHHHHHHHHHHHHh--------CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcc
Q 002090 731 FQVEMSEIRSIVTA--------TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 731 fs~~~~~~~~il~~--------a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
.+..++..+..++. ..++-|+++|+||++.|+. ..+ ...+......|-+..+.||...+.+.+
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--rei-sl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSV-DIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHH-HHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 66777765544333 3688999999999999995 344 333444444577888888866665544
No 461
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.65 E-value=0.00031 Score=75.91 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=34.5
Q ss_pred CCCCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 745 TTSRSLVLIDEICR------GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 745 a~~~~LlLlDEp~~------GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
..+|++||+| |.+ ..|+.....+...+.+...+.|+++|+++|..-
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999 654 468877767755555555567999999999643
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.58 E-value=6.2e-05 Score=70.27 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=27.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSIC 689 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~ 689 (968)
..++++++| |++++|+||||||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 467788887 6899999999999999999974
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.57 E-value=0.0002 Score=81.64 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=58.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC-cCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~-~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~ 746 (968)
+.+++|+||+||||||+|+.+.+.+.....+..+-.+ ...+. .+.....+. ...+.....+|... +..++ -.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~~~~---l~~~l--r~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSFANA---LRAAL--RE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCHHHH---HHHhh--cc
Confidence 5789999999999999999987653221112211111 11000 000000000 00011111122211 12222 47
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 747 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 747 ~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+|+++++||+. |+.... ..++ ....|..++.++|-.+...
T Consensus 195 ~pd~i~vgEir---d~~~~~----~~l~-aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 195 DPDVILIGEMR---DLETVE----LALT-AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred CCCEEEEeCCC---CHHHHH----HHHH-HHHcCCcEEEEEcCCCHHH
Confidence 99999999996 765432 2233 3456999999999655443
No 464
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.56 E-value=0.00032 Score=68.05 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=57.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhh-cCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 747 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~-~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~ 747 (968)
..+.|+||.|+||||+++.++....-.. ...++......... ......... ............+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~ 84 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL--VVAELFGHF-------------LVRLLFELAEKAK 84 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh--HHHHHhhhh-------------hHhHHHHhhccCC
Confidence 4689999999999999999987653100 00011110000000 000000000 1122223334567
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----hcCcEEEEeccChhh
Q 002090 748 RSLVLIDEICRGTETAKGTCIAGSIIETLD-----NIGCLGIVSTHLHGI 792 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~-----~~g~~vl~~TH~~el 792 (968)
+.++++||.-.. ++.....+ ..+++.+. ..++.+|++|+....
T Consensus 85 ~~~lilDe~~~~-~~~~~~~~-~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 85 PGVLFIDEIDSL-SRGAQNAL-LRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CeEEEEeChhhh-hHHHHHHH-HHHHHhcCceeccCCCeEEEEecCcccc
Confidence 899999999876 34344444 33344333 257889999997653
No 465
>PRK04296 thymidine kinase; Provisional
Probab=97.56 E-value=0.00044 Score=71.99 Aligned_cols=114 Identities=19% Similarity=0.049 Sum_probs=60.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh-cCc-eeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGL-MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~-~g~-~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a 745 (968)
|.+.+|+||.|+||||++..++.-...+. ... +.|.-..... ...+..+++..-.. ........-...+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~---~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE---EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh---hC
Confidence 57899999999999999877754432221 111 2121011111 12234444421110 001111111111111 34
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 746 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 746 ~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+.++|++||.-. ++.. .+ ..+++.++..|.+|+++.++.+
T Consensus 77 ~~~dvviIDEaq~-l~~~---~v-~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDKE---QV-VQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEcccc-CCHH---HH-HHHHHHHHHcCCeEEEEecCcc
Confidence 5679999999932 3332 23 5577887888999999999843
No 466
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00084 Score=77.74 Aligned_cols=88 Identities=16% Similarity=0.299 Sum_probs=55.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh---hcCceeccCcCCcchHHHHH---hhcCCCCCccCCccchHHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG---ICGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 741 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la---~~g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~s~fs~~~~~~~~i 741 (968)
|++++++||||+||||+++.+++...+. ..+.++..+...++.++++. ..+|..-..... .......
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~-------~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD-------IADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC-------HHHHHHH
Confidence 6889999999999999999999865432 23445666666666665432 223332111111 1122344
Q ss_pred HHhCCCCcEEEEeCCCCCCCHHH
Q 002090 742 VTATTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~GlD~~~ 764 (968)
+....+.+++|+|.+ |..+.+
T Consensus 264 l~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 264 LHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHhcCCCEEEecCC--CCCcch
Confidence 455778899999975 666644
No 467
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.47 E-value=0.0002 Score=93.18 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=56.1
Q ss_pred CccCCccchHHHHHHHHHHHHh-C----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 723 SPADGKSSFQVEMSEIRSIVTA-T----------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 723 ~~~~~~s~fs~~~~~~~~il~~-a----------~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.......++|+|++.+..+..+ + .+|+++||||||+|+|+.....+ ..+++.+...|.+|+|+||+.+
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~l~~~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRA-IGILDAIREGSKMIGIISHVPE 1021 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCcHH
Confidence 3345678999999986654332 2 27999999999999999776666 5566667778999999999999
Q ss_pred hhhcc
Q 002090 792 IFSLP 796 (968)
Q Consensus 792 l~~~~ 796 (968)
+....
T Consensus 1022 ~~~~~ 1026 (1042)
T TIGR00618 1022 FRERI 1026 (1042)
T ss_pred HHHhh
Confidence 87643
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.43 E-value=9.8e-05 Score=77.26 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++|+||+|||||||+++++++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999875
No 469
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.42 E-value=0.00039 Score=73.65 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=26.5
Q ss_pred CCCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHHh
Q 002090 745 TTSRSLVLIDEIC-----RGTETAKGTCIAGSIIETLDN 778 (968)
Q Consensus 745 a~~~~LlLlDEp~-----~GlD~~~~~~i~~~ll~~l~~ 778 (968)
+.+|+++++|||| +|+||.....+ ..++..++.
T Consensus 168 ~~~p~~~~ldEp~~~~~~~~ld~~~~~~~-~~~~~~~~~ 205 (215)
T PTZ00132 168 TNDPNLVFVGAPALAPEEIQIDPELVAQA-EKELQAAAN 205 (215)
T ss_pred hhcccceecCCcccCCCccccCHHHHHHH-HHHHHHHhh
Confidence 7899999999999 99999887777 455554543
No 470
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.42 E-value=0.00014 Score=60.75 Aligned_cols=25 Identities=48% Similarity=0.745 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|.+++|+|||||||||+|..+.-++
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999996554
No 471
>PRK09183 transposase/IS protein; Provisional
Probab=97.40 E-value=0.0005 Score=75.16 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=56.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc---eeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGL---MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~---~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~ 744 (968)
++.++|+||+|+|||+|+.+++..... .|. |+.. ..++..+..... . . .+..++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~~--------~~l~~~l~~a~~--~--~-------~~~~~~~~ 160 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTTA--------ADLLLQLSTAQR--Q--G-------RYKTTLQR 160 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeH--------HHHHHHHHHHHH--C--C-------cHHHHHHH
Confidence 678999999999999999999765432 232 2211 112211110000 0 0 11122222
Q ss_pred -CCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 745 -TTSRSLVLIDEICRG-TETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 745 -a~~~~LlLlDEp~~G-lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
...++++++||.+.. .+. +...+...++....+.+ .+|++|+.
T Consensus 161 ~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 161 GVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred HhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 467899999999864 555 33434456665555555 46777775
No 472
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=0.00058 Score=90.93 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=54.9
Q ss_pred CccCCccchHHHHHHH------HHHH-HhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEeccChh
Q 002090 723 SPADGKSSFQVEMSEI------RSIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD----NIGCLGIVSTHLHG 791 (968)
Q Consensus 723 ~~~~~~s~fs~~~~~~------~~il-~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~----~~g~~vl~~TH~~e 791 (968)
........+|+|++++ ..+. +.+.+|.+++|||||+|+|+.....+...+.+.+. ..|.++|++||+++
T Consensus 1192 ~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~ 1271 (1311)
T TIGR00606 1192 TALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271 (1311)
T ss_pred eecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH
Confidence 3333446899999983 2222 33789999999999999999888888666666543 24789999999999
Q ss_pred hhhc
Q 002090 792 IFSL 795 (968)
Q Consensus 792 l~~~ 795 (968)
++..
T Consensus 1272 ~~~~ 1275 (1311)
T TIGR00606 1272 FVEL 1275 (1311)
T ss_pred HHHH
Confidence 8754
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.37 E-value=0.00022 Score=73.91 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|+.++|+|||||||||+++++++++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999998875
No 474
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0027 Score=72.18 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=49.3
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHh---hcCCCCCccCCccchHHHHHHHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIML---HMKSYDSPADGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~---~~~~~d~~~~~~s~fs~~~~~~~~il~~ 744 (968)
.+++|+||||+||||++..+++.+... ....++-++...+...+++-. .++..-.... -...+.+....+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~----d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR----DEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC----CHHHHHHHHHHHHh
Confidence 468999999999999999998764321 112245555544444444433 2222110001 11222222222222
Q ss_pred CCCCcEEEEeCCCCCCCH
Q 002090 745 TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~ 762 (968)
..+.++||+|-|++.-..
T Consensus 318 ~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 318 EARVDYILIDTAGKNYRA 335 (436)
T ss_pred ccCCCEEEEeCccccCcC
Confidence 236799999988875533
No 475
>PRK01156 chromosome segregation protein; Provisional
Probab=97.34 E-value=0.00047 Score=88.67 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCccchHHHHHHHHHHH-------HhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC--cEEEEeccChhhhhcc
Q 002090 726 DGKSSFQVEMSEIRSIV-------TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGIVSTHLHGIFSLP 796 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il-------~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g--~~vl~~TH~~el~~~~ 796 (968)
.....+|+|+++...++ ..+.+|++++|||||+|+|+.....+...+...+...+ .++|++||++++...+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 35667999998865432 22678999999999999999888877555544555543 4899999999988765
Q ss_pred ccc
Q 002090 797 LKI 799 (968)
Q Consensus 797 ~~~ 799 (968)
+.+
T Consensus 877 d~i 879 (895)
T PRK01156 877 DVA 879 (895)
T ss_pred CeE
Confidence 543
No 476
>PRK03918 chromosome segregation protein; Provisional
Probab=97.33 E-value=0.0004 Score=89.28 Aligned_cols=72 Identities=7% Similarity=-0.096 Sum_probs=53.8
Q ss_pred CCccchHHHHHHHHHHH-------HhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 726 DGKSSFQVEMSEIRSIV-------TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il-------~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
....++|+|+++...+. ..+.+|+++||||||+|+|+.....+...+. .+...+.++|++||++++...++.
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~-~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIME-RYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHhCCe
Confidence 34567899998854322 1267899999999999999988888755544 445557899999999988665443
No 477
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.33 E-value=0.00036 Score=90.57 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=56.1
Q ss_pred CCccchHHHHHHHHHHHHh-C--------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 726 DGKSSFQVEMSEIRSIVTA-T--------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il~~-a--------~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
....++|+|++++..+... + .+|+++||||||+|+|+.....+ +.+++.+.+.|.+|+|+||..++.+.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~-~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTA-LDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 5578899999987665444 3 27999999999999999776666 66778888889999999998777553
No 478
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.32 E-value=0.00037 Score=84.88 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=51.9
Q ss_pred CccchHHHHHHHHHHHHh-C----------CCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 727 GKSSFQVEMSEIRSIVTA-T----------TSRSLVLIDEIC-RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 727 ~~s~fs~~~~~~~~il~~-a----------~~~~LlLlDEp~-~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
...++|+|+++...++.+ + .+|+++|||||+ +++|+.....+.. ++..+ .|.++|++||+.++..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~--~~~~iiiish~~~~~~ 541 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL--KDTNVFVISHKDHDPQ 541 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--CCCeEEEEECchhchh
Confidence 457899999987665533 2 589999999998 7899988777744 45445 4789999999987766
Q ss_pred ccc
Q 002090 795 LPL 797 (968)
Q Consensus 795 ~~~ 797 (968)
.++
T Consensus 542 ~~d 544 (562)
T PHA02562 542 KFD 544 (562)
T ss_pred hhh
Confidence 544
No 479
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=97.31 E-value=0.00023 Score=69.48 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=31.7
Q ss_pred eEEEEEeccccceeEeecCCCHHHHHHHHHcCCcceEEEcCCCc
Q 002090 177 GYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLR 220 (968)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~l~~~L~~~~p~Eil~~~~~~ 220 (968)
+|+|++||++. ++++.+.+.|.++|.+++|+||+++++..
T Consensus 18 a~~D~sTGe~~----~~~~~d~~~L~~~L~~~~P~EIi~~~~~~ 57 (137)
T PF05188_consen 18 AYIDLSTGEFY----VTEFEDYSELKSELARLSPREIIIPEGFS 57 (137)
T ss_dssp EEEETTTTEEE----EEEEECHHHHHHHHHHH-ESEEEEETTCS
T ss_pred EEEECCCCEEE----EEEeCCHHHHHHHHHhcCCeEEEEcCCCc
Confidence 56666555555 88887788999999999999999998863
No 480
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.25 E-value=0.003 Score=79.91 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=40.6
Q ss_pred CCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 745 TTSRSLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 745 a~~~~LlLlDEp~~Gl-D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
..+|.++++|||..++ |+.....+ ..+++.+++.|.+++++||+.+.+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i-~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKI-REWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 5789999999999999 57655554 7777777888999999999988764
No 481
>PRK06893 DNA replication initiation factor; Validated
Probab=97.23 E-value=0.0013 Score=70.70 Aligned_cols=93 Identities=17% Similarity=0.289 Sum_probs=56.9
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhh-cCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 747 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~-~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~ 747 (968)
..+.|.||.|+|||+|++.++.-..... ...|++.... ..+. ..++....+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------------------~~~~------~~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------------------QYFS------PAVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------------------hhhh------HHHHhhccc
Confidence 4579999999999999999987643221 1122222100 0000 123334567
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 748 RSLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 748 ~~LlLlDEp~~Gl-D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
.++|++||+.... +......+ ..++..+.+.|.++|++|++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAI-FDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHH-HHHHHHHHHcCCcEEEEeCCC
Confidence 8999999998865 33333333 666777777777776666654
No 482
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.21 E-value=0.0022 Score=73.50 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=68.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHhC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~a 745 (968)
|+++.|.|++|+|||||+.+++...... ....|+..+.. ...+..-..+++.. +++.....+ .+.++...+. .
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~---~le~I~~~i~-~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAET---NLEDILASIE-E 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccC---cHHHHHHHHH-h
Confidence 6899999999999999999998765332 22335443322 12222223445532 221111111 2233333332 3
Q ss_pred CCCcEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 746 TSRSLVLIDEICR----GTE-----TAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 746 ~~~~LlLlDEp~~----GlD-----~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
.+|++|++|+... .+| ...-..++..+.+..++.+.+++++.|-.
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvt 210 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 5899999999743 222 12223445667777788899999999843
No 483
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.21 E-value=0.0036 Score=66.99 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=64.9
Q ss_pred eceEEEEEecCCCCcchHHHHHHhHHH-hhhcCceeccCcCCcch----------HHHHHh--hcCCCCCccC------C
Q 002090 667 MQSLFLLTGPNGGGKSSLLRSICAASL-LGICGLMVPAESASIPY----------FDAIML--HMKSYDSPAD------G 727 (968)
Q Consensus 667 lg~~~~I~GpNGsGKSTllk~i~gl~~-la~~g~~vp~~~~~~~~----------~~~i~~--~~~~~d~~~~------~ 727 (968)
-|++++|.||+|+|||||...++.-.. ....+.|+..+...-.. ++.... ++...|.... .
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~~ 98 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKEDEWS 98 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEccccccccccc
Confidence 378999999999999999998764221 22233344332211000 111110 1111111100 0
Q ss_pred ccchHH-HH-HHHHHHHHhC-CCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 728 KSSFQV-EM-SEIRSIVTAT-TSRSLVLIDEICRGT--ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 728 ~s~fs~-~~-~~~~~il~~a-~~~~LlLlDEp~~Gl--D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
...++. +. .++..+.... .+++++++|-++.-+ +|.....+...+...+++.|+|+|+++|...
T Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~ 167 (229)
T TIGR03881 99 LRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAI 167 (229)
T ss_pred cccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 011111 11 1222233322 257788888886542 4433445556777778888999999999654
No 484
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.001 Score=64.00 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=56.7
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh---CCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA---TTS 747 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~---a~~ 747 (968)
++|+||.|+||||+.+.++... +..+ ..+.. ..+.. . ......+.+..++.. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~----~~i~~-~~~~~---------~---~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPF----IEIDG-SELIS---------S---YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEE----EEEET-THHHT---------S---STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cccc----ccccc-ccccc---------c---ccccccccccccccccccccc
Confidence 5799999999999999997653 2110 00000 00110 0 112222333333333 224
Q ss_pred CcEEEEeCCCCCCCHH------HHHHHHHHHHHHHHh-----cCcEEEEeccChhhh
Q 002090 748 RSLVLIDEICRGTETA------KGTCIAGSIIETLDN-----IGCLGIVSTHLHGIF 793 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~~------~~~~i~~~ll~~l~~-----~g~~vl~~TH~~el~ 793 (968)
|.++++||.-.-.... ....+...++..+.. .+..+|++|++.+..
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 8999999985544332 334555666666653 236888899986554
No 485
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.10 E-value=0.0091 Score=65.48 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=52.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh-hhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l-a~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~ 746 (968)
+..++++||||+||||+++.+++.... .....++-.+...+..+.++-......+ .......-...+.+...-++...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC-ceEEecCCHHHHHHHHHHHHhcC
Confidence 378999999999999999999887532 1223345555444444444433221111 00000000112222222223345
Q ss_pred CCcEEEEeCCCCCC-CHHH
Q 002090 747 SRSLVLIDEICRGT-ETAK 764 (968)
Q Consensus 747 ~~~LlLlDEp~~Gl-D~~~ 764 (968)
+.+++|+|-|++.- |...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~ 172 (270)
T PRK06731 154 RVDYILIDTAGKNYRASET 172 (270)
T ss_pred CCCEEEEECCCCCcCCHHH
Confidence 78999999999874 4433
No 486
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.10 E-value=0.0029 Score=67.88 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=65.9
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcC-CcchHHHHHhhcCCC-----CCccCCc-c-
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESA-SIPYFDAIMLHMKSY-----DSPADGK-S- 729 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~-~~~~~~~i~~~~~~~-----d~~~~~~-s- 729 (968)
+.-|+++.|+||+|+|||||+.+++...... ....|+-.+.. ....+.++...++.. +++.... .
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 4447899999999999999999998664332 22234433321 112222333332221 1111000 0
Q ss_pred --chHHHHHHHHHHHHhCCCCcEEEEeCCCCCC----C----HHHHHHHHHHHHHHH----HhcCcEEEEeccCh
Q 002090 730 --SFQVEMSEIRSIVTATTSRSLVLIDEICRGT----E----TAKGTCIAGSIIETL----DNIGCLGIVSTHLH 790 (968)
Q Consensus 730 --~fs~~~~~~~~il~~a~~~~LlLlDEp~~Gl----D----~~~~~~i~~~ll~~l----~~~g~~vl~~TH~~ 790 (968)
.+..-+.++...+....++.+|++|-.++=. + ..++......++..| ++.+++||+++|-.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 1111122233333333489999999998621 1 123333333333333 46799999998843
No 487
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.08 E-value=0.0029 Score=74.68 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=68.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCCC-CccCCccchHHHHHHHHHHHHhC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~a 745 (968)
|+++.|.|++|+|||||+.+++...... ....|+-.+.. ...+..-..+++... ++... .. ..+.++...+. .
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~-~e--~~~~~I~~~i~-~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVL-SE--TNWEQICANIE-E 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEc-CC--CCHHHHHHHHH-h
Confidence 6899999999999999999997754322 22345543322 112211123344321 11110 01 12233333332 3
Q ss_pred CCCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 746 TSRSLVLIDEICRGTE---------TAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 746 ~~~~LlLlDEp~~GlD---------~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+|+++++|....=.. ......++..+.+..++.|.|+++++|...
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 5799999998764221 222334445677777888999999999643
No 488
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0013 Score=75.09 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=52.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh---cCceeccCcCCcchHHHHH---hhcCCCCCccCCccchHHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 741 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~---~g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~s~fs~~~~~~~~i 741 (968)
|++++++||||+||||++..++......+ ...++..+...++-.+++- ..++..-........ +...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-------l~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-------LQLA 209 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc-------HHHH
Confidence 67899999999999999999998754331 2235555554444444332 233332111111112 2334
Q ss_pred HHhCCCCcEEEEeCCCCC
Q 002090 742 VTATTSRSLVLIDEICRG 759 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~G 759 (968)
+....+.++||+|+|+..
T Consensus 210 l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHhcCCCEEEEcCCCCC
Confidence 455678899999999765
No 489
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0073 Score=69.53 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=51.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh-----hcCceeccCcCCcchHHHHH---hhcCCCCCccCCccchHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIR 739 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la-----~~g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~s~fs~~~~~~~ 739 (968)
+.+++++||||+||||++.-++...... ....++-.+.....-.+++- ..++.. +. .... ...+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~-~~~~----~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VK-AIES----FKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eE-eeCc----HHHHH
Confidence 3689999999999999999998765432 12224444444443333322 223331 11 1111 12344
Q ss_pred HHHHhCCCCcEEEEeCCCCCC
Q 002090 740 SIVTATTSRSLVLIDEICRGT 760 (968)
Q Consensus 740 ~il~~a~~~~LlLlDEp~~Gl 760 (968)
..+....+.++||+|++++.-
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCc
Confidence 455556788999999998875
No 490
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.002 Score=79.27 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=56.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh---cCceeccCcCCcchHHHHH---hhcCCCCCccCCccchHHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 741 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~---~g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~s~fs~~~~~~~~i 741 (968)
+++++++||||+||||++..|++.....+ ...++..+...++..+++. ..+++.-.... ....+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-------~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-------DAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-------CHHHHHHH
Confidence 68999999999999999999999764332 2245666666655555433 23333211111 12335555
Q ss_pred HHhCCCCcEEEEeCCCCC-CCH
Q 002090 742 VTATTSRSLVLIDEICRG-TET 762 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~G-lD~ 762 (968)
+..+.+.++||+|=+++. .|.
T Consensus 258 l~~~~~~D~VLIDTAGRs~~d~ 279 (767)
T PRK14723 258 LAALGDKHLVLIDTVGMSQRDR 279 (767)
T ss_pred HHHhcCCCEEEEeCCCCCccCH
Confidence 666677899999987754 344
No 491
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.0018 Score=67.49 Aligned_cols=106 Identities=26% Similarity=0.328 Sum_probs=61.4
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHH------------hhcCCCCCccCCccchHHHHHHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM------------LHMKSYDSPADGKSSFQVEMSEI 738 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~------------~~~~~~d~~~~~~s~fs~~~~~~ 738 (968)
+.|+||.++||||+||-|+.++--... .|.|-+-..+.--.+|- .++.+-|. ..+..
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~----------cpk~~ 208 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDP----------CPKAE 208 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccchhhccccCCchhhhhhhhhhccc----------chHHH
Confidence 799999999999999999988643322 22332211111111111 11111111 11111
Q ss_pred H-HHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 739 R-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 739 ~-~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
. .++-..+.|.+++.||.++-.|. .++++.+ +.|..++.+-|=.++.++
T Consensus 209 gmmmaIrsm~PEViIvDEIGt~~d~-------~A~~ta~-~~GVkli~TaHG~~iedl 258 (308)
T COG3854 209 GMMMAIRSMSPEVIIVDEIGTEEDA-------LAILTAL-HAGVKLITTAHGNGIEDL 258 (308)
T ss_pred HHHHHHHhcCCcEEEEeccccHHHH-------HHHHHHH-hcCcEEEEeeccccHHHh
Confidence 1 11222578999999999998887 3444444 459999999996666444
No 492
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.04 E-value=0.003 Score=69.19 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+++|+||||+||||+++.++...
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc
Confidence 479999999999999999996653
No 493
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.04 E-value=0.00084 Score=88.89 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=53.9
Q ss_pred CccchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 727 GKSSFQVEMSEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 727 ~~s~fs~~~~~~~~il~~-----a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
....+|+|++++..+... +.+|+++|||||++|+|+.....+ ..++..+.+ +.++||+||++++...++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~-~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERF-ANLLKEFSK-NTQFIVITHNKGTMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHH-HHHHHHhcc-CCEEEEEEcChhHHHHhhhH
Confidence 445789999987665544 467799999999999999887777 445555554 47899999999987665543
No 494
>PRK06921 hypothetical protein; Provisional
Probab=97.03 E-value=0.0022 Score=70.40 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=58.6
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhh--hcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLG--ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 747 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la--~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~ 747 (968)
-+.++||.|+|||.|+.+|+.-+.-. ....|++. ..++..+.. .| ......+....+
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~--------~~l~~~l~~---------~~----~~~~~~~~~~~~ 177 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF--------VEGFGDLKD---------DF----DLLEAKLNRMKK 177 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH--------HHHHHHHHH---------HH----HHHHHHHHHhcC
Confidence 47899999999999999998765432 22234432 112222100 11 112234455678
Q ss_pred CcEEEEeCCCC---CC---CHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 748 RSLVLIDEICR---GT---ETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 748 ~~LlLlDEp~~---Gl---D~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
.+|||||+... |. +......+ ..++......+..+|++|+.
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~l-f~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQM-YSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHH-HHHHHHHHHCCCCEEEECCC
Confidence 99999999954 43 23233334 56666665556778888886
No 495
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.02 E-value=0.0011 Score=78.07 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=51.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh---cCceeccCcCCcchHHHHH---hhcCCCCCccCCccchHHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 741 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~---~g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~s~fs~~~~~~~~i 741 (968)
|++++++||||+||||++..|++.....+ ...+++++...++..+++- ..++..-...... .+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~-------~Dl~~a 328 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDA-------ADLRLA 328 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCc-------hhHHHH
Confidence 56899999999999999999999765432 2236777766555554432 2223211110110 112223
Q ss_pred HHhCCCCcEEEEeCCCCC
Q 002090 742 VTATTSRSLVLIDEICRG 759 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~G 759 (968)
+....+.+++++|.++.+
T Consensus 329 L~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 329 LSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHhccCCCeEEeCCCCcC
Confidence 344567789999997654
No 496
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.99 E-value=0.0054 Score=65.39 Aligned_cols=125 Identities=12% Similarity=0.122 Sum_probs=65.6
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhhh-------cCceeccCcC-CcchHHHHHhhcCCC-----CCccC-Cccc
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESA-SIPYFDAIMLHMKSY-----DSPAD-GKSS 730 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la~-------~g~~vp~~~~-~~~~~~~i~~~~~~~-----d~~~~-~~s~ 730 (968)
+.-|+++.|.||+|+||||++.+++....... ...|+-.+.. ....+.++...++.. +++.. ...+
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 34478999999999999999999987754332 2234443332 112233333333221 11110 0011
Q ss_pred hHHHHHH-HHHHHH--hCCCCcEEEEeCCCCCCC--------HHHHHH----HHHHHHHHHHhcCcEEEEeccCh
Q 002090 731 FQVEMSE-IRSIVT--ATTSRSLVLIDEICRGTE--------TAKGTC----IAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 731 fs~~~~~-~~~il~--~a~~~~LlLlDEp~~GlD--------~~~~~~----i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
..++.. +..+.. ...++++|++|=.++=.. ..++.. ++..+.....+.++++|+++|-.
T Consensus 96 -~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~ 169 (226)
T cd01393 96 -GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR 169 (226)
T ss_pred -HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence 112222 222222 145789999999865321 112222 22333444456899999999854
No 497
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.99 E-value=0.0014 Score=63.19 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=58.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhh-----hc-Ccee--ccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLG-----IC-GLMV--PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRS 740 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la-----~~-g~~v--p~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~ 740 (968)
.++.|+||.|+||||+++.++.-.... +. -.++ |.....-..+..+...++..... ..+...-...+..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQTSDELRSLLID 81 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS-HHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCCHHHHHHHHHH
Confidence 578999999999999999998765321 11 1122 22222234455666666654332 1111111223344
Q ss_pred HHHhCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 741 IVTATTSRSLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 741 il~~a~~~~LlLlDEp~~Gl-D~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
.+.... ..+|++||.=. + + ......+.....+.+..+|++.+.
T Consensus 82 ~l~~~~-~~~lviDe~~~-l~~----~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRR-VVLLVIDEADH-LFS----DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCT-EEEEEEETTHH-HHT----HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHhcC-CeEEEEeChHh-cCC----HHHHHHHHHHHhCCCCeEEEEECh
Confidence 443322 27999999865 4 3 233333333333456777777665
No 498
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.99 E-value=0.0039 Score=73.46 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=68.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh-hhcCceeccCcCCcchHHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHhC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l-a~~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~a 745 (968)
|+++.|.|+.|+|||||+.+++..... .....|+..+... ..+..-..+++.. +++..... ..+.++...+. .
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~-~qi~~ra~rlg~~~~~l~~~~e---~~l~~i~~~i~-~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESA-SQIKLRAERLGLPSDNLYLLAE---TNLEAILATIE-E 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccH-HHHHHHHHHcCCChhcEEEeCC---CCHHHHHHHHH-h
Confidence 689999999999999999999876542 2223455443321 2222223445432 11111000 11233333332 3
Q ss_pred CCCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 746 TSRSLVLIDEICRGTE---------TAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 746 ~~~~LlLlDEp~~GlD---------~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
.+|++|++|+..+-.. ...-..++..+.+..++.|.++++++|-
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hv 207 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHV 207 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 5799999999864322 1222344456777778889999999994
No 499
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0043 Score=73.19 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh---cCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~---~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~ 744 (968)
|++++|+||+|+||||++..++....... ...++..+...++..+++...-.. -.+.... . .....+..++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~i-Lgv~v~~-a--~d~~~L~~aL~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQ-LGIAVHE-A--DSAESLLDLLER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcc-cCceeEe-c--CcHHHHHHHHHH
Confidence 68899999999999999999987654432 233555554444433333222110 0000000 0 112234455666
Q ss_pred CCCCcEEEEeCCCCC
Q 002090 745 TTSRSLVLIDEICRG 759 (968)
Q Consensus 745 a~~~~LlLlDEp~~G 759 (968)
..+.++||+|.|+.+
T Consensus 426 l~~~DLVLIDTaG~s 440 (559)
T PRK12727 426 LRDYKLVLIDTAGMG 440 (559)
T ss_pred hccCCEEEecCCCcc
Confidence 678999999999875
No 500
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.97 E-value=0.0011 Score=71.83 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|+.++|+||+|+||||+++.++...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 7889999999999999999998764
Done!