Query 002090
Match_columns 968
No_of_seqs 583 out of 3474
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 100.0 2E-109 6E-114 1021.4 46.2 728 42-858 8-798 (800)
2 3thx_B DNA mismatch repair pro 100.0 3E-108 1E-112 1017.0 39.2 750 43-860 12-881 (918)
3 1ewq_A DNA mismatch repair pro 100.0 1E-106 5E-111 989.8 41.5 701 41-857 10-763 (765)
4 2o8b_B DNA mismatch repair pro 100.0 7E-101 2E-105 966.0 44.3 767 29-859 52-988 (1022)
5 3thx_A DNA mismatch repair pro 100.0 7.5E-93 2.6E-97 882.2 44.4 752 46-859 21-854 (934)
6 3tif_A Uncharacterized ABC tra 99.9 2E-21 6.9E-26 207.1 16.9 148 659-807 18-223 (235)
7 2pcj_A ABC transporter, lipopr 99.9 3.3E-21 1.1E-25 204.0 17.6 141 658-799 16-209 (224)
8 3gfo_A Cobalt import ATP-bindi 99.9 1.7E-21 5.7E-26 212.1 15.3 150 649-799 11-214 (275)
9 1vpl_A ABC transporter, ATP-bi 99.8 4.3E-21 1.5E-25 206.9 15.3 147 651-799 21-216 (256)
10 3fvq_A Fe(3+) IONS import ATP- 99.8 4.5E-21 1.5E-25 215.1 15.5 151 657-807 15-217 (359)
11 4g1u_C Hemin import ATP-bindin 99.8 4.1E-21 1.4E-25 208.3 13.8 142 657-799 22-218 (266)
12 2olj_A Amino acid ABC transpor 99.8 1.1E-20 3.6E-25 204.5 14.9 147 651-799 30-229 (263)
13 3tui_C Methionine import ATP-b 99.8 1.2E-20 4.1E-25 211.7 15.7 143 659-802 41-237 (366)
14 1g6h_A High-affinity branched- 99.8 1.3E-20 4.6E-25 203.5 15.1 146 651-798 13-222 (257)
15 1z47_A CYSA, putative ABC-tran 99.8 1.3E-20 4.6E-25 211.3 14.0 148 652-799 21-216 (355)
16 3rlf_A Maltose/maltodextrin im 99.8 1.2E-20 4.3E-25 212.9 13.8 151 657-807 14-212 (381)
17 2nq2_C Hypothetical ABC transp 99.8 1.9E-20 6.4E-25 201.7 14.4 146 652-798 11-198 (253)
18 1ji0_A ABC transporter; ATP bi 99.8 2.5E-20 8.5E-25 199.4 14.7 147 651-799 12-209 (240)
19 1b0u_A Histidine permease; ABC 99.8 1.8E-20 6.2E-25 203.0 13.7 142 657-799 17-223 (262)
20 2yyz_A Sugar ABC transporter, 99.8 3E-20 1E-24 209.0 15.1 149 657-805 14-210 (359)
21 3d31_A Sulfate/molybdate ABC t 99.8 3E-20 1E-24 208.3 14.4 147 658-805 13-204 (348)
22 2it1_A 362AA long hypothetical 99.8 3.6E-20 1.2E-24 208.5 14.4 150 657-806 14-211 (362)
23 1sgw_A Putative ABC transporte 99.8 2.8E-20 9.5E-25 195.1 12.2 140 651-794 16-197 (214)
24 2ff7_A Alpha-hemolysin translo 99.8 5.3E-20 1.8E-24 197.5 14.5 146 651-798 13-212 (247)
25 2yz2_A Putative ABC transporte 99.8 8.6E-20 2.9E-24 198.1 15.6 140 659-799 20-208 (266)
26 2ixe_A Antigen peptide transpo 99.8 5.6E-20 1.9E-24 200.0 13.9 138 659-797 32-224 (271)
27 2d2e_A SUFC protein; ABC-ATPas 99.8 6.2E-20 2.1E-24 197.5 14.1 142 652-795 10-208 (250)
28 1v43_A Sugar-binding transport 99.8 4.6E-20 1.6E-24 208.4 12.7 149 657-805 22-218 (372)
29 2zu0_C Probable ATP-dependent 99.8 1.2E-19 4.2E-24 197.0 14.9 143 651-795 26-229 (267)
30 2qi9_C Vitamin B12 import ATP- 99.8 9.2E-20 3.2E-24 195.7 13.7 138 660-798 14-202 (249)
31 2onk_A Molybdate/tungstate ABC 99.8 1.2E-19 4.2E-24 193.7 14.6 144 661-805 14-203 (240)
32 2ihy_A ABC transporter, ATP-bi 99.8 7E-20 2.4E-24 199.9 12.0 147 650-798 26-232 (279)
33 1mv5_A LMRA, multidrug resista 99.8 4.9E-20 1.7E-24 197.5 10.5 143 653-797 9-205 (243)
34 1g29_1 MALK, maltose transport 99.8 8.6E-20 2.9E-24 206.5 13.1 151 657-807 14-218 (372)
35 1oxx_K GLCV, glucose, ABC tran 99.8 9.7E-20 3.3E-24 204.9 11.4 142 658-799 15-211 (353)
36 2pze_A Cystic fibrosis transme 99.8 7.3E-20 2.5E-24 194.3 8.7 147 651-798 12-198 (229)
37 2ghi_A Transport protein; mult 99.8 4E-19 1.4E-23 192.2 13.4 137 659-797 33-221 (260)
38 3nh6_A ATP-binding cassette SU 99.8 1.6E-19 5.6E-24 199.0 10.0 149 649-799 57-258 (306)
39 2cbz_A Multidrug resistance-as 99.8 3.5E-19 1.2E-23 190.0 11.1 139 658-797 17-196 (237)
40 2pjz_A Hypothetical protein ST 99.8 5.5E-19 1.9E-23 191.1 12.6 134 659-797 18-193 (263)
41 3gd7_A Fusion complex of cysti 99.8 1E-18 3.5E-23 198.7 10.1 149 651-801 25-225 (390)
42 2bbs_A Cystic fibrosis transme 99.8 8.5E-19 2.9E-23 192.2 8.9 139 658-797 50-226 (290)
43 1yqt_A RNAse L inhibitor; ATP- 99.7 2.4E-17 8.1E-22 196.0 14.2 143 651-794 27-222 (538)
44 3j16_B RLI1P; ribosome recycli 99.7 2.5E-17 8.7E-22 197.5 12.1 142 653-794 354-532 (608)
45 3b60_A Lipid A export ATP-bind 99.7 3.1E-16 1.1E-20 188.7 20.6 148 650-799 346-548 (582)
46 3bk7_A ABC transporter ATP-bin 99.7 5.7E-17 2E-21 194.7 13.6 144 650-794 96-292 (607)
47 2yl4_A ATP-binding cassette SU 99.7 6.4E-17 2.2E-21 195.2 13.8 156 650-807 346-559 (595)
48 3b5x_A Lipid A export ATP-bind 99.7 3.4E-17 1.2E-21 197.1 11.2 149 649-799 345-548 (582)
49 3qf4_B Uncharacterized ABC tra 99.7 2.5E-17 8.6E-22 198.7 9.7 148 650-799 359-559 (598)
50 3ozx_A RNAse L inhibitor; ATP 99.7 6.6E-17 2.3E-21 191.7 12.6 130 668-797 294-454 (538)
51 3qf4_A ABC transporter, ATP-bi 99.7 5.1E-16 1.8E-20 186.8 20.4 150 650-801 346-549 (587)
52 3j16_B RLI1P; ribosome recycli 99.7 8.3E-17 2.8E-21 193.0 12.6 144 650-794 82-285 (608)
53 4a82_A Cystic fibrosis transme 99.7 5.2E-17 1.8E-21 195.3 10.8 154 650-805 344-551 (578)
54 3bk7_A ABC transporter ATP-bin 99.7 1.2E-16 4.2E-21 191.9 13.6 135 660-794 370-536 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.7 1.3E-16 4.5E-21 189.5 12.9 135 660-794 300-466 (538)
56 3ozx_A RNAse L inhibitor; ATP 99.7 4E-16 1.4E-20 185.1 14.0 135 658-794 12-201 (538)
57 3ux8_A Excinuclease ABC, A sub 99.6 3.5E-16 1.2E-20 191.5 11.8 82 717-799 188-273 (670)
58 2iw3_A Elongation factor 3A; a 99.6 1.3E-15 4.5E-20 189.1 13.7 150 651-805 441-621 (986)
59 3ux8_A Excinuclease ABC, A sub 99.6 2.8E-15 9.5E-20 183.5 13.1 75 724-799 537-615 (670)
60 4gp7_A Metallophosphoesterase; 99.6 5.4E-16 1.8E-20 156.9 4.1 126 668-795 9-164 (171)
61 2iw3_A Elongation factor 3A; a 99.6 2.4E-15 8.2E-20 186.8 9.7 82 714-799 883-968 (986)
62 3g5u_A MCG1178, multidrug resi 99.5 1.3E-14 4.6E-19 188.5 10.7 157 649-807 391-602 (1284)
63 3g5u_A MCG1178, multidrug resi 99.5 9.4E-15 3.2E-19 190.0 8.6 150 650-801 1035-1241(1284)
64 2vf7_A UVRA2, excinuclease ABC 99.5 3.9E-14 1.3E-18 174.5 13.0 85 714-799 713-802 (842)
65 3thx_A DNA mismatch repair pro 99.5 4.7E-14 1.6E-18 175.9 13.7 284 288-617 300-614 (934)
66 4aby_A DNA repair protein RECN 99.5 1.1E-13 3.9E-18 159.5 15.8 114 731-854 296-414 (415)
67 2r6f_A Excinuclease ABC subuni 99.5 4.1E-14 1.4E-18 174.5 12.4 84 714-798 828-916 (972)
68 4f4c_A Multidrug resistance pr 99.5 2E-13 6.9E-18 178.0 19.7 160 649-810 419-633 (1321)
69 2ygr_A Uvrabc system protein A 99.5 7E-14 2.4E-18 173.0 13.9 84 714-798 846-934 (993)
70 3pih_A Uvrabc system protein A 99.5 1.2E-13 4.1E-18 171.5 13.3 84 715-799 789-877 (916)
71 1ye8_A Protein THEP1, hypothet 99.5 5.4E-14 1.8E-18 143.2 7.2 121 670-794 2-147 (178)
72 4f4c_A Multidrug resistance pr 99.4 9.9E-14 3.4E-18 180.9 11.0 158 649-808 1080-1294(1321)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 1.4E-13 4.7E-18 156.1 9.6 72 726-798 275-353 (365)
74 3b85_A Phosphate starvation-in 99.4 4.5E-15 1.5E-19 154.9 -4.6 128 658-795 12-163 (208)
75 3thx_B DNA mismatch repair pro 99.3 1.3E-11 4.6E-16 153.5 18.2 283 288-618 319-628 (918)
76 1e69_A Chromosome segregation 99.3 1E-11 3.5E-16 138.4 13.2 71 727-799 216-291 (322)
77 2ehv_A Hypothetical protein PH 99.3 1.2E-11 4.1E-16 131.7 11.3 49 745-793 133-185 (251)
78 2npi_A Protein CLP1; CLP1-PCF1 99.3 1E-12 3.5E-17 152.8 2.3 117 668-791 138-299 (460)
79 3qkt_A DNA double-strand break 99.2 3.5E-11 1.2E-15 135.0 14.3 70 727-797 245-321 (339)
80 1znw_A Guanylate kinase, GMP k 99.2 6.9E-13 2.4E-17 138.2 0.2 130 657-794 7-192 (207)
81 2o8b_B DNA mismatch repair pro 99.2 1.6E-11 5.5E-16 155.1 11.8 281 288-616 395-730 (1022)
82 4a74_A DNA repair and recombin 99.2 2.4E-11 8.2E-16 127.7 7.2 129 664-792 21-182 (231)
83 1nlf_A Regulatory protein REPA 99.1 9.7E-11 3.3E-15 127.6 10.7 133 660-794 22-185 (279)
84 1wb9_A DNA mismatch repair pro 99.1 1.9E-10 6.6E-15 141.9 12.3 306 288-645 267-589 (800)
85 1ewq_A DNA mismatch repair pro 99.1 2.9E-10 9.8E-15 139.6 13.3 102 288-398 250-367 (765)
86 2w0m_A SSO2452; RECA, SSPF, un 99.1 3.5E-10 1.2E-14 118.7 11.0 122 668-790 23-168 (235)
87 1cr0_A DNA primase/helicase; R 99.1 2.5E-10 8.5E-15 125.4 10.3 131 660-790 23-197 (296)
88 1tq4_A IIGP1, interferon-induc 99.1 5.8E-12 2E-16 144.1 -3.3 121 670-792 71-237 (413)
89 3ec2_A DNA replication protein 99.0 1.2E-10 4.1E-15 118.1 4.0 104 668-791 38-144 (180)
90 1tf7_A KAIC; homohexamer, hexa 99.0 4.6E-10 1.6E-14 133.3 8.8 121 666-790 279-417 (525)
91 2eyu_A Twitching motility prot 99.0 1.6E-10 5.6E-15 124.6 3.8 123 660-797 15-140 (261)
92 1tf7_A KAIC; homohexamer, hexa 98.9 1.6E-09 5.5E-14 128.7 10.3 136 656-793 22-188 (525)
93 2pt7_A CAG-ALFA; ATPase, prote 98.9 1.5E-10 5.1E-15 129.2 0.4 117 661-797 160-282 (330)
94 2cvh_A DNA repair and recombin 98.9 3.7E-09 1.2E-13 110.1 10.6 121 668-791 20-157 (220)
95 3b9q_A Chloroplast SRP recepto 98.9 8.8E-10 3E-14 121.4 4.9 116 668-791 100-258 (302)
96 2kjq_A DNAA-related protein; s 98.9 4.1E-09 1.4E-13 103.8 8.7 86 667-789 35-124 (149)
97 1pzn_A RAD51, DNA repair and r 98.9 4.1E-09 1.4E-13 118.5 9.8 125 667-791 130-287 (349)
98 1n0w_A DNA repair protein RAD5 98.8 6E-09 2E-13 110.2 9.7 127 665-792 21-176 (243)
99 3jvv_A Twitching mobility prot 98.8 2.5E-09 8.4E-14 120.4 6.6 113 668-797 123-238 (356)
100 2og2_A Putative signal recogni 98.8 2.5E-09 8.4E-14 120.2 6.4 116 668-791 157-315 (359)
101 2jeo_A Uridine-cytidine kinase 98.8 7.4E-10 2.5E-14 118.3 1.4 37 656-692 9-49 (245)
102 1z6g_A Guanylate kinase; struc 98.8 1.2E-10 4.2E-15 122.3 -4.9 130 660-793 11-197 (218)
103 2obl_A ESCN; ATPase, hydrolase 98.8 1.1E-09 3.7E-14 122.9 1.5 139 655-807 55-244 (347)
104 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 1.1E-08 3.7E-13 100.6 8.4 73 724-797 51-130 (148)
105 3sop_A Neuronal-specific septi 98.7 1.2E-09 4E-14 118.5 0.2 40 748-793 114-153 (270)
106 3aez_A Pantothenate kinase; tr 98.7 7E-10 2.4E-14 122.7 -1.6 116 668-793 90-231 (312)
107 2i3b_A HCR-ntpase, human cance 98.7 1.1E-09 3.6E-14 112.4 -0.2 26 668-693 1-26 (189)
108 3asz_A Uridine kinase; cytidin 98.7 8.4E-11 2.9E-15 122.3 -10.5 121 668-790 6-161 (211)
109 2dpy_A FLII, flagellum-specifi 98.7 6.2E-09 2.1E-13 120.4 3.6 146 650-807 136-333 (438)
110 2v9p_A Replication protein E1; 98.6 6.6E-10 2.2E-14 122.1 -5.3 116 659-799 113-248 (305)
111 1s96_A Guanylate kinase, GMP k 98.6 1.7E-08 5.9E-13 105.9 4.5 114 668-794 16-144 (219)
112 2ewv_A Twitching motility prot 98.5 2E-07 6.9E-12 105.6 9.8 121 661-797 127-251 (372)
113 2r6f_A Excinuclease ABC subuni 98.5 3.2E-07 1.1E-11 113.6 11.5 87 714-801 487-577 (972)
114 3pih_A Uvrabc system protein A 98.5 2.9E-07 9.8E-12 114.6 10.6 89 713-802 446-538 (916)
115 3lda_A DNA repair protein RAD5 98.4 3.2E-07 1.1E-11 104.7 9.4 126 665-790 175-328 (400)
116 2vf7_A UVRA2, excinuclease ABC 98.4 5.9E-07 2E-11 110.9 11.5 86 714-800 362-451 (842)
117 3szr_A Interferon-induced GTP- 98.4 1.7E-07 5.9E-12 112.9 6.2 48 746-793 145-199 (608)
118 2ygr_A Uvrabc system protein A 98.4 5.7E-07 1.9E-11 111.8 10.9 84 715-799 505-592 (993)
119 2dr3_A UPF0273 protein PH0284; 98.4 1.5E-06 5.2E-11 91.7 12.6 47 746-792 127-175 (247)
120 2qnr_A Septin-2, protein NEDD5 98.4 2.5E-07 8.6E-12 101.8 6.2 32 658-691 10-41 (301)
121 2px0_A Flagellar biosynthesis 98.4 1.9E-06 6.4E-11 94.5 12.8 115 668-792 105-228 (296)
122 2qag_B Septin-6, protein NEDD5 98.4 3.2E-07 1.1E-11 104.9 6.9 84 745-828 174-262 (427)
123 4ad8_A DNA repair protein RECN 98.3 1.1E-06 3.8E-11 104.0 11.3 119 726-854 392-516 (517)
124 1rj9_A FTSY, signal recognitio 98.3 3.4E-07 1.2E-11 100.8 6.3 25 668-692 102-126 (304)
125 1lw7_A Transcriptional regulat 98.3 1.4E-07 4.6E-12 106.8 2.4 127 668-794 170-333 (365)
126 2qag_C Septin-7; cell cycle, c 98.3 1.8E-07 6.2E-12 107.2 2.6 35 657-693 22-56 (418)
127 1sxj_E Activator 1 40 kDa subu 98.3 1.3E-06 4.4E-11 97.8 9.3 45 745-792 132-176 (354)
128 3kta_B Chromosome segregation 98.1 6.4E-06 2.2E-10 82.9 9.4 71 726-798 60-135 (173)
129 2zr9_A Protein RECA, recombina 98.1 1.1E-05 3.7E-10 90.6 12.1 124 664-791 57-199 (349)
130 3e70_C DPA, signal recognition 97.9 1.1E-05 3.8E-10 89.6 7.9 25 668-692 129-153 (328)
131 2bbw_A Adenylate kinase 4, AK4 97.9 3.9E-06 1.3E-10 89.3 3.7 25 668-692 27-54 (246)
132 1htw_A HI0065; nucleotide-bind 97.9 9.4E-07 3.2E-11 87.7 -1.3 35 658-692 19-57 (158)
133 2yhs_A FTSY, cell division pro 97.9 1.3E-05 4.4E-10 92.9 7.6 25 668-692 293-317 (503)
134 1fnn_A CDC6P, cell division co 97.8 4.5E-05 1.5E-09 86.0 10.4 121 670-794 46-173 (389)
135 3hr8_A Protein RECA; alpha and 97.8 0.00013 4.4E-09 81.7 13.7 123 664-789 57-197 (356)
136 1ls1_A Signal recognition part 97.8 6.8E-05 2.3E-09 82.0 10.3 104 668-776 98-209 (295)
137 1w1w_A Structural maintenance 97.7 4.3E-05 1.5E-09 88.2 8.6 71 727-798 330-405 (430)
138 2gza_A Type IV secretion syste 97.7 1.1E-05 3.7E-10 91.0 2.5 30 663-692 166-199 (361)
139 1pui_A ENGB, probable GTP-bind 97.7 1.2E-05 4E-10 82.7 1.8 48 730-777 149-198 (210)
140 1odf_A YGR205W, hypothetical 3 97.6 1.1E-05 3.9E-10 88.0 1.2 25 669-693 32-56 (290)
141 3auy_A DNA double-strand break 97.6 8.6E-05 2.9E-09 83.9 8.2 68 728-797 278-353 (371)
142 2qby_A CDC6 homolog 1, cell di 97.6 2.9E-05 9.9E-10 87.2 3.9 124 668-794 45-177 (386)
143 1udx_A The GTP-binding protein 97.6 2.8E-05 9.5E-10 89.0 3.7 120 663-788 148-306 (416)
144 2r6a_A DNAB helicase, replicat 97.5 0.00027 9.3E-09 82.1 11.2 122 668-789 203-363 (454)
145 3tr0_A Guanylate kinase, GMP k 97.5 3.3E-05 1.1E-09 79.1 3.0 25 668-692 7-31 (205)
146 2z4s_A Chromosomal replication 97.5 0.00012 4.1E-09 84.7 7.4 103 669-790 131-237 (440)
147 2ce7_A Cell division protein F 97.5 0.00026 9E-09 82.3 10.0 100 671-794 52-168 (476)
148 1v5w_A DMC1, meiotic recombina 97.5 0.00024 8.2E-09 79.4 9.4 124 667-791 121-275 (343)
149 1vma_A Cell division protein F 97.4 0.00024 8.1E-09 78.1 8.7 86 668-758 104-197 (306)
150 3lnc_A Guanylate kinase, GMP k 97.4 4.8E-05 1.7E-09 79.8 2.5 33 660-692 15-52 (231)
151 2xau_A PRE-mRNA-splicing facto 97.4 0.00014 4.8E-09 89.9 6.5 124 668-792 109-254 (773)
152 3c8u_A Fructokinase; YP_612366 97.4 7.4E-05 2.5E-09 77.2 3.4 27 668-694 22-48 (208)
153 3kl4_A SRP54, signal recogniti 97.4 0.0004 1.4E-08 79.7 9.7 116 668-789 97-223 (433)
154 3a00_A Guanylate kinase, GMP k 97.4 5.9E-05 2E-09 76.5 2.5 25 668-692 1-25 (186)
155 2o5v_A DNA replication and rep 97.3 0.00023 7.7E-09 80.0 6.2 56 730-789 265-330 (359)
156 1lvg_A Guanylate kinase, GMP k 97.3 9.1E-05 3.1E-09 76.0 2.6 25 668-692 4-28 (198)
157 3euj_A Chromosome partition pr 97.2 0.00014 4.7E-09 84.5 4.0 34 660-693 18-54 (483)
158 2ius_A DNA translocase FTSK; n 97.2 0.00023 7.8E-09 83.3 5.3 25 668-692 167-191 (512)
159 1zp6_A Hypothetical protein AT 97.2 0.00015 5.2E-09 73.2 2.9 24 668-691 9-32 (191)
160 3bos_A Putative DNA replicatio 97.1 0.00035 1.2E-08 72.7 5.8 94 668-789 52-147 (242)
161 2z43_A DNA repair and recombin 97.1 0.00068 2.3E-08 75.0 8.1 125 665-790 104-258 (324)
162 1u94_A RECA protein, recombina 97.1 0.002 6.9E-08 72.2 11.6 123 665-791 60-201 (356)
163 1l8q_A Chromosomal replication 97.1 0.00055 1.9E-08 75.5 6.5 101 669-789 38-140 (324)
164 2w58_A DNAI, primosome compone 97.0 0.00027 9.1E-09 72.2 3.5 25 669-693 55-79 (202)
165 1kgd_A CASK, peripheral plasma 97.0 0.00024 8.1E-09 71.6 3.0 25 668-692 5-29 (180)
166 3kta_A Chromosome segregation 97.0 0.00032 1.1E-08 70.3 3.6 28 665-692 22-50 (182)
167 2bdt_A BH3686; alpha-beta prot 97.0 0.00027 9.1E-09 71.5 2.9 23 668-690 2-24 (189)
168 4eun_A Thermoresistant glucoki 96.9 0.00033 1.1E-08 71.7 3.1 25 668-692 29-53 (200)
169 3vaa_A Shikimate kinase, SK; s 96.9 0.00034 1.2E-08 71.6 3.1 37 656-692 9-49 (199)
170 1sq5_A Pantothenate kinase; P- 96.9 0.00038 1.3E-08 76.6 3.4 26 668-693 80-105 (308)
171 3b9p_A CG5977-PA, isoform A; A 96.9 0.0011 3.8E-08 71.9 7.1 23 669-691 55-77 (297)
172 2e87_A Hypothetical protein PH 96.9 0.00047 1.6E-08 77.4 3.8 113 670-790 169-292 (357)
173 2v1u_A Cell division control p 96.8 0.00085 2.9E-08 75.2 5.8 122 669-792 45-179 (387)
174 2qm8_A GTPase/ATPase; G protei 96.8 0.00028 9.6E-09 78.6 1.0 35 660-694 43-81 (337)
175 2x8a_A Nuclear valosin-contain 96.8 0.0035 1.2E-07 67.6 9.6 101 671-794 47-160 (274)
176 2j41_A Guanylate kinase; GMP, 96.7 0.00053 1.8E-08 70.0 2.6 25 668-692 6-30 (207)
177 1njg_A DNA polymerase III subu 96.7 0.0054 1.8E-07 63.2 10.3 114 669-791 46-167 (250)
178 1lv7_A FTSH; alpha/beta domain 96.7 0.0042 1.4E-07 65.9 9.6 23 670-692 47-69 (257)
179 2i1q_A DNA repair and recombin 96.7 0.0026 8.7E-08 70.2 8.1 123 665-788 95-257 (322)
180 3uie_A Adenylyl-sulfate kinase 96.7 0.00075 2.6E-08 69.0 3.3 26 668-693 25-50 (200)
181 1ixz_A ATP-dependent metallopr 96.7 0.0049 1.7E-07 65.2 9.8 22 671-692 52-73 (254)
182 1zu4_A FTSY; GTPase, signal re 96.7 0.009 3.1E-07 65.9 12.1 26 668-693 105-130 (320)
183 1jbk_A CLPB protein; beta barr 96.7 0.003 1E-07 62.7 7.5 113 669-792 44-163 (195)
184 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0011 3.6E-08 64.8 3.9 28 664-691 18-46 (149)
185 1p9r_A General secretion pathw 96.6 0.00076 2.6E-08 77.2 3.3 32 661-693 158-192 (418)
186 1kag_A SKI, shikimate kinase I 96.6 0.00071 2.4E-08 67.1 2.5 24 668-691 4-27 (173)
187 3tau_A Guanylate kinase, GMP k 96.6 0.00078 2.7E-08 69.4 2.8 25 668-692 8-32 (208)
188 3llm_A ATP-dependent RNA helic 96.6 0.0036 1.2E-07 65.6 8.0 24 668-691 76-99 (235)
189 1knq_A Gluconate kinase; ALFA/ 96.6 0.00096 3.3E-08 66.4 3.3 25 668-692 8-32 (175)
190 2p65_A Hypothetical protein PF 96.6 0.0022 7.5E-08 63.6 5.7 113 669-792 44-164 (187)
191 1ywl_A Hypothetical UPF0213 pr 96.6 0.0013 4.5E-08 58.9 3.6 74 877-951 7-90 (96)
192 1qhl_A Protein (cell division 96.5 0.00014 4.9E-09 76.3 -3.2 29 664-692 22-51 (227)
193 3k1j_A LON protease, ATP-depen 96.5 0.00029 1E-08 84.8 -1.2 36 657-692 45-84 (604)
194 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.014 4.8E-07 64.0 12.1 102 668-789 123-235 (331)
195 2vp4_A Deoxynucleoside kinase; 96.5 0.00085 2.9E-08 70.3 2.3 24 668-691 20-43 (230)
196 1xp8_A RECA protein, recombina 96.4 0.017 5.8E-07 64.8 12.7 123 664-790 70-211 (366)
197 2b8t_A Thymidine kinase; deoxy 96.4 0.0051 1.7E-07 64.2 7.8 112 668-792 12-128 (223)
198 1nij_A Hypothetical protein YJ 96.4 0.0013 4.3E-08 72.7 2.9 24 669-692 5-28 (318)
199 1rz3_A Hypothetical protein rb 96.3 0.0017 5.8E-08 66.5 3.4 25 668-692 22-46 (201)
200 4e22_A Cytidylate kinase; P-lo 96.3 0.0012 4.2E-08 70.2 2.4 22 668-689 27-48 (252)
201 1ypw_A Transitional endoplasmi 96.3 0.0044 1.5E-07 77.0 7.5 104 669-794 239-354 (806)
202 2o5v_A DNA replication and rep 96.3 0.0019 6.6E-08 72.4 3.5 29 664-692 21-50 (359)
203 1zg2_A Hypothetical UPF0213 pr 96.2 0.0051 1.7E-07 56.2 5.5 68 877-945 8-83 (107)
204 3tqc_A Pantothenate kinase; bi 96.2 0.0018 6.3E-08 71.4 3.1 23 670-692 94-116 (321)
205 1u0l_A Probable GTPase ENGC; p 96.2 0.0014 4.8E-08 71.7 2.1 24 668-691 169-192 (301)
206 3nwj_A ATSK2; P loop, shikimat 96.2 0.00077 2.6E-08 71.8 -0.1 38 654-691 27-71 (250)
207 3io5_A Recombination and repai 96.2 0.021 7.2E-07 62.4 11.2 120 668-791 29-173 (333)
208 3ney_A 55 kDa erythrocyte memb 96.2 0.002 7E-08 65.9 3.0 24 668-691 19-42 (197)
209 2qgz_A Helicase loader, putati 96.2 0.0023 7.7E-08 70.3 3.5 103 670-789 154-257 (308)
210 2q6t_A DNAB replication FORK h 96.2 0.017 5.9E-07 66.6 11.1 28 667-694 199-226 (444)
211 2oap_1 GSPE-2, type II secreti 96.2 0.0015 5.2E-08 76.7 2.2 32 661-692 249-284 (511)
212 2rcn_A Probable GTPase ENGC; Y 96.2 0.0016 5.5E-08 72.8 2.2 25 668-692 215-239 (358)
213 3cf0_A Transitional endoplasmi 96.1 0.0087 3E-07 65.3 8.0 23 669-691 50-72 (301)
214 1w1w_A Structural maintenance 96.1 0.0024 8.1E-08 73.5 3.6 29 664-692 20-50 (430)
215 3qks_A DNA double-strand break 96.1 0.0029 1E-07 65.0 3.9 29 664-692 18-47 (203)
216 4a1f_A DNAB helicase, replicat 96.1 0.0051 1.8E-07 68.2 6.1 113 668-788 46-164 (338)
217 3h4m_A Proteasome-activating n 96.1 0.0043 1.5E-07 66.7 5.2 23 669-691 52-74 (285)
218 2f1r_A Molybdopterin-guanine d 96.0 0.0015 5.2E-08 65.3 1.3 26 669-694 3-28 (171)
219 3m6a_A ATP-dependent protease 96.0 0.0031 1.1E-07 74.8 4.1 25 668-692 108-132 (543)
220 2dy1_A Elongation factor G; tr 96.0 0.009 3.1E-07 72.6 8.1 115 668-793 9-139 (665)
221 2dhr_A FTSH; AAA+ protein, hex 96.0 0.018 6.2E-07 67.3 10.0 102 671-794 67-183 (499)
222 1jjv_A Dephospho-COA kinase; P 96.0 0.0027 9.1E-08 65.0 2.6 21 670-690 4-24 (206)
223 3dm5_A SRP54, signal recogniti 95.9 0.014 4.8E-07 66.9 8.7 24 669-692 101-124 (443)
224 3bh0_A DNAB-like replicative h 95.9 0.033 1.1E-06 61.1 11.4 26 668-693 68-93 (315)
225 2if2_A Dephospho-COA kinase; a 95.9 0.0032 1.1E-07 64.1 2.9 21 670-690 3-23 (204)
226 2yv5_A YJEQ protein; hydrolase 95.9 0.003 1E-07 69.1 2.7 22 668-689 165-186 (302)
227 3t15_A Ribulose bisphosphate c 95.9 0.0047 1.6E-07 67.2 4.2 24 669-692 37-60 (293)
228 1t9h_A YLOQ, probable GTPase E 95.9 0.0012 4E-08 72.4 -0.6 25 668-692 173-197 (307)
229 1cke_A CK, MSSA, protein (cyti 95.8 0.0038 1.3E-07 64.6 3.1 23 669-691 6-28 (227)
230 3lxx_A GTPase IMAP family memb 95.8 0.0058 2E-07 64.1 4.5 114 670-788 31-154 (239)
231 1sxj_D Activator 1 41 kDa subu 95.8 0.014 4.7E-07 64.6 7.7 23 671-693 61-83 (353)
232 2r8r_A Sensor protein; KDPD, P 95.8 0.005 1.7E-07 64.1 3.8 47 746-792 83-129 (228)
233 3d8b_A Fidgetin-like protein 1 95.7 0.012 4E-07 66.0 6.9 22 670-691 119-140 (357)
234 1oix_A RAS-related protein RAB 95.7 0.0042 1.4E-07 62.7 2.9 23 670-692 31-53 (191)
235 1svm_A Large T antigen; AAA+ f 95.7 0.0019 6.6E-08 72.8 0.3 31 661-691 158-192 (377)
236 2qt1_A Nicotinamide riboside k 95.6 0.005 1.7E-07 63.0 3.0 24 668-691 21-44 (207)
237 2pez_A Bifunctional 3'-phospho 95.5 0.006 2.1E-07 60.8 3.3 25 668-692 5-29 (179)
238 2f9l_A RAB11B, member RAS onco 95.5 0.0053 1.8E-07 62.2 2.7 22 670-691 7-28 (199)
239 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.027 9.3E-07 59.4 8.4 22 670-691 41-62 (262)
240 1in4_A RUVB, holliday junction 95.4 0.0053 1.8E-07 68.0 2.6 24 669-692 52-75 (334)
241 3cmw_A Protein RECA, recombina 95.4 0.072 2.4E-06 70.3 13.3 122 665-790 729-869 (1706)
242 3cr8_A Sulfate adenylyltranfer 95.3 0.005 1.7E-07 72.9 2.1 26 668-693 369-394 (552)
243 4fcw_A Chaperone protein CLPB; 95.3 0.03 1E-06 60.8 8.1 24 670-693 49-72 (311)
244 4b4t_K 26S protease regulatory 95.2 0.033 1.1E-06 63.6 8.4 104 670-796 208-327 (428)
245 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.05 1.7E-06 59.9 9.4 105 670-793 47-162 (322)
246 4eaq_A DTMP kinase, thymidylat 95.2 0.12 4.1E-06 53.8 11.9 25 668-692 26-50 (229)
247 3co5_A Putative two-component 95.2 0.042 1.4E-06 52.7 7.7 85 671-788 30-114 (143)
248 4b4t_L 26S protease subunit RP 95.2 0.076 2.6E-06 60.8 11.1 105 670-797 217-337 (437)
249 2orv_A Thymidine kinase; TP4A 95.1 0.068 2.3E-06 55.7 9.6 109 667-792 18-128 (234)
250 2orw_A Thymidine kinase; TMTK, 95.1 0.0063 2.2E-07 61.5 1.7 39 747-791 76-114 (184)
251 3pfi_A Holliday junction ATP-d 95.0 0.055 1.9E-06 59.5 9.3 22 670-691 57-78 (338)
252 3auy_A DNA double-strand break 95.0 0.013 4.5E-07 65.9 4.2 29 664-692 20-49 (371)
253 4b4t_J 26S protease regulatory 95.0 0.046 1.6E-06 61.8 8.6 104 671-797 185-304 (405)
254 3t61_A Gluconokinase; PSI-biol 95.0 0.0092 3.1E-07 60.7 2.6 24 669-692 19-42 (202)
255 2qor_A Guanylate kinase; phosp 94.9 0.0089 3E-07 61.1 2.3 24 668-691 12-35 (204)
256 1iy2_A ATP-dependent metallopr 94.8 0.011 3.6E-07 63.7 2.7 22 671-692 76-97 (278)
257 3cmw_A Protein RECA, recombina 94.8 0.13 4.3E-06 68.0 13.1 123 665-791 380-521 (1706)
258 1xx6_A Thymidine kinase; NESG, 94.8 0.035 1.2E-06 56.4 6.2 109 668-791 8-119 (191)
259 1j8m_F SRP54, signal recogniti 94.7 0.089 3.1E-06 57.2 9.7 26 668-693 98-123 (297)
260 3vfd_A Spastin; ATPase, microt 94.7 0.045 1.5E-06 61.8 7.5 22 670-691 150-171 (389)
261 2chg_A Replication factor C sm 94.7 0.17 5.6E-06 51.1 11.2 22 671-692 41-62 (226)
262 3syl_A Protein CBBX; photosynt 94.6 0.062 2.1E-06 58.2 8.3 22 671-692 70-91 (309)
263 1q57_A DNA primase/helicase; d 94.6 0.12 4.1E-06 60.5 11.2 26 668-693 242-267 (503)
264 2zts_A Putative uncharacterize 94.6 0.097 3.3E-06 54.4 9.5 46 745-790 133-182 (251)
265 3n70_A Transport activator; si 94.6 0.032 1.1E-06 53.6 5.1 20 671-690 27-46 (145)
266 1w5s_A Origin recognition comp 94.5 0.036 1.2E-06 62.6 6.3 123 669-793 51-192 (412)
267 3bgw_A DNAB-like replicative h 94.5 0.17 5.7E-06 58.3 11.9 27 668-694 197-223 (444)
268 1ni3_A YCHF GTPase, YCHF GTP-b 94.5 0.015 5.1E-07 65.9 2.9 24 668-691 20-43 (392)
269 1ypw_A Transitional endoplasmi 94.5 0.011 3.8E-07 73.4 2.0 25 668-692 511-535 (806)
270 4b4t_M 26S protease regulatory 94.4 0.091 3.1E-06 60.1 9.3 104 671-797 218-337 (434)
271 2yvu_A Probable adenylyl-sulfa 94.4 0.019 6.5E-07 57.5 3.3 25 668-692 13-37 (186)
272 3cm0_A Adenylate kinase; ATP-b 94.4 0.017 5.7E-07 57.7 2.7 23 668-690 4-26 (186)
273 3eie_A Vacuolar protein sortin 94.4 0.02 6.8E-07 63.0 3.5 22 670-691 53-74 (322)
274 3hu3_A Transitional endoplasmi 94.3 0.096 3.3E-06 61.1 9.4 101 671-792 241-352 (489)
275 1d2n_A N-ethylmaleimide-sensit 94.3 0.055 1.9E-06 57.7 6.8 22 670-691 66-87 (272)
276 3kb2_A SPBC2 prophage-derived 94.2 0.019 6.4E-07 56.3 2.6 22 670-691 3-24 (173)
277 2qp9_X Vacuolar protein sortin 94.2 0.063 2.2E-06 59.9 7.2 23 670-692 86-108 (355)
278 3cmu_A Protein RECA, recombina 94.1 0.23 7.8E-06 66.5 13.3 123 665-791 380-521 (2050)
279 3cmu_A Protein RECA, recombina 94.1 0.17 5.9E-06 67.6 12.2 118 668-789 1427-1563(2050)
280 1np6_A Molybdopterin-guanine d 94.1 0.022 7.7E-07 56.9 3.1 24 669-692 7-30 (174)
281 4b4t_I 26S protease regulatory 94.1 0.1 3.5E-06 59.3 8.7 104 670-797 218-338 (437)
282 3pvs_A Replication-associated 94.1 0.093 3.2E-06 60.5 8.4 22 670-691 52-73 (447)
283 2zan_A Vacuolar protein sortin 94.0 0.026 8.8E-07 65.1 3.7 23 669-691 168-190 (444)
284 1m7g_A Adenylylsulfate kinase; 94.0 0.026 8.7E-07 57.9 3.3 26 668-693 25-50 (211)
285 2www_A Methylmalonic aciduria 94.0 0.022 7.7E-07 63.5 3.0 24 670-693 76-99 (349)
286 4ad8_A DNA repair protein RECN 94.0 0.011 3.9E-07 69.5 0.5 29 664-692 55-84 (517)
287 2wji_A Ferrous iron transport 93.9 0.022 7.4E-07 55.7 2.4 22 670-691 5-26 (165)
288 2ze6_A Isopentenyl transferase 93.9 0.024 8.2E-07 60.2 2.9 23 669-691 2-24 (253)
289 1jr3_A DNA polymerase III subu 93.8 0.075 2.6E-06 59.0 6.9 24 669-692 39-62 (373)
290 1qvr_A CLPB protein; coiled co 93.8 0.071 2.4E-06 66.7 7.4 113 671-792 194-311 (854)
291 1y63_A LMAJ004144AAA protein; 93.8 0.026 8.8E-07 56.6 2.7 23 668-690 10-32 (184)
292 1qhx_A CPT, protein (chloramph 93.8 0.026 8.9E-07 55.8 2.7 24 668-691 3-26 (178)
293 2ffh_A Protein (FFH); SRP54, s 93.7 0.11 3.8E-06 59.3 8.0 26 668-693 98-123 (425)
294 1q3t_A Cytidylate kinase; nucl 93.7 0.028 9.5E-07 58.8 2.9 24 668-691 16-39 (236)
295 1hqc_A RUVB; extended AAA-ATPa 93.6 0.19 6.6E-06 54.5 9.6 22 670-691 40-61 (324)
296 2gj8_A MNME, tRNA modification 93.6 0.032 1.1E-06 55.1 3.0 23 669-691 5-27 (172)
297 4b4t_H 26S protease regulatory 93.5 0.16 5.5E-06 58.2 9.0 103 671-796 246-364 (467)
298 1sxj_A Activator 1 95 kDa subu 93.4 0.081 2.8E-06 62.1 6.6 23 670-692 79-101 (516)
299 2p67_A LAO/AO transport system 93.4 0.036 1.2E-06 61.5 3.4 26 668-693 56-81 (341)
300 2wjg_A FEOB, ferrous iron tran 93.4 0.032 1.1E-06 55.4 2.6 22 670-691 9-30 (188)
301 2qby_B CDC6 homolog 3, cell di 93.4 0.03 1E-06 62.6 2.7 24 669-692 46-69 (384)
302 1vht_A Dephospho-COA kinase; s 93.3 0.034 1.2E-06 57.1 2.7 22 669-690 5-26 (218)
303 1ex7_A Guanylate kinase; subst 93.3 0.03 1E-06 56.6 2.2 21 669-689 2-22 (186)
304 1via_A Shikimate kinase; struc 93.2 0.032 1.1E-06 55.2 2.2 22 670-691 6-27 (175)
305 3lw7_A Adenylate kinase relate 93.2 0.035 1.2E-06 54.1 2.5 19 670-688 3-21 (179)
306 1ly1_A Polynucleotide kinase; 93.1 0.039 1.3E-06 54.4 2.8 22 669-690 3-24 (181)
307 1kht_A Adenylate kinase; phosp 93.1 0.039 1.3E-06 55.0 2.7 22 669-690 4-25 (192)
308 2rhm_A Putative kinase; P-loop 93.0 0.045 1.5E-06 54.7 3.0 23 668-690 5-27 (193)
309 1ega_A Protein (GTP-binding pr 92.8 0.042 1.4E-06 59.9 2.7 24 668-691 8-31 (301)
310 2zej_A Dardarin, leucine-rich 92.8 0.035 1.2E-06 55.3 1.8 22 670-691 4-25 (184)
311 2p5t_B PEZT; postsegregational 92.8 0.037 1.3E-06 58.6 2.1 23 669-691 33-55 (253)
312 2jaq_A Deoxyguanosine kinase; 92.7 0.045 1.5E-06 55.2 2.6 22 670-691 2-23 (205)
313 1gvn_B Zeta; postsegregational 92.7 0.048 1.7E-06 59.0 2.9 22 669-690 34-55 (287)
314 3lxw_A GTPase IMAP family memb 92.6 0.046 1.6E-06 57.7 2.6 22 670-691 23-44 (247)
315 1w4r_A Thymidine kinase; type 92.5 0.088 3E-06 53.4 4.4 114 661-793 12-130 (195)
316 3r20_A Cytidylate kinase; stru 92.5 0.056 1.9E-06 56.7 3.1 23 669-691 10-32 (233)
317 3ice_A Transcription terminati 92.5 0.057 1.9E-06 60.5 3.2 27 668-694 174-200 (422)
318 2v3c_C SRP54, signal recogniti 92.5 0.17 5.9E-06 57.9 7.4 25 669-693 100-124 (432)
319 1gtv_A TMK, thymidylate kinase 92.4 0.033 1.1E-06 56.8 1.1 23 670-692 2-24 (214)
320 1yd6_A UVRC; DNA binding prote 92.4 0.19 6.7E-06 45.1 5.9 74 875-949 14-96 (99)
321 1xjc_A MOBB protein homolog; s 92.3 0.065 2.2E-06 53.2 3.1 23 670-692 6-28 (169)
322 2j9r_A Thymidine kinase; TK1, 92.3 0.23 7.9E-06 51.1 7.2 110 668-792 28-140 (214)
323 3ake_A Cytidylate kinase; CMP 92.3 0.064 2.2E-06 54.2 3.1 22 670-691 4-25 (208)
324 1uf9_A TT1252 protein; P-loop, 92.3 0.059 2E-06 54.3 2.8 22 669-690 9-30 (203)
325 3iij_A Coilin-interacting nucl 92.2 0.052 1.8E-06 53.8 2.3 22 669-690 12-33 (180)
326 1tue_A Replication protein E1; 92.2 0.14 4.9E-06 52.3 5.5 22 670-691 60-81 (212)
327 1ofh_A ATP-dependent HSL prote 92.2 0.21 7.3E-06 53.7 7.3 22 671-692 53-74 (310)
328 1sxj_C Activator 1 40 kDa subu 92.1 0.058 2E-06 59.6 2.7 26 668-693 44-71 (340)
329 1yd0_A Uvrabc system protein C 92.0 0.22 7.4E-06 44.5 5.8 72 875-947 14-92 (96)
330 2vli_A Antibiotic resistance p 91.9 0.066 2.3E-06 53.0 2.6 22 669-690 6-27 (183)
331 3u61_B DNA polymerase accessor 91.9 0.22 7.6E-06 54.3 7.1 23 669-691 49-71 (324)
332 2bjv_A PSP operon transcriptio 91.9 0.17 5.7E-06 53.6 5.9 22 670-691 31-52 (265)
333 1tev_A UMP-CMP kinase; ploop, 91.9 0.072 2.5E-06 53.1 2.9 22 669-690 4-25 (196)
334 1nks_A Adenylate kinase; therm 91.9 0.07 2.4E-06 53.1 2.8 22 670-691 3-24 (194)
335 3te6_A Regulatory protein SIR3 91.8 0.22 7.4E-06 54.6 6.8 114 670-793 47-176 (318)
336 2z0h_A DTMP kinase, thymidylat 91.8 0.071 2.4E-06 53.4 2.7 22 670-691 2-23 (197)
337 3trf_A Shikimate kinase, SK; a 91.8 0.073 2.5E-06 52.9 2.7 23 669-691 6-28 (185)
338 3pxg_A Negative regulator of g 91.8 0.1 3.5E-06 60.6 4.3 97 671-791 204-302 (468)
339 1m2o_B GTP-binding protein SAR 91.7 0.08 2.7E-06 53.0 2.9 30 661-690 13-45 (190)
340 1ojl_A Transcriptional regulat 91.6 0.44 1.5E-05 51.8 9.0 22 670-691 27-48 (304)
341 3e2i_A Thymidine kinase; Zn-bi 91.5 0.22 7.7E-06 51.2 6.1 110 668-792 28-140 (219)
342 2plr_A DTMP kinase, probable t 91.5 0.083 2.8E-06 53.5 2.9 24 668-691 4-27 (213)
343 1iqp_A RFCS; clamp loader, ext 91.5 0.19 6.5E-06 54.5 6.0 23 670-692 48-70 (327)
344 2c95_A Adenylate kinase 1; tra 91.5 0.084 2.9E-06 52.8 2.9 23 669-691 10-32 (196)
345 2v54_A DTMP kinase, thymidylat 91.5 0.081 2.8E-06 53.4 2.7 24 668-691 4-27 (204)
346 2wwf_A Thymidilate kinase, put 91.4 0.087 3E-06 53.5 2.9 24 668-691 10-33 (212)
347 2a5y_B CED-4; apoptosis; HET: 91.4 0.4 1.4E-05 56.7 9.0 116 669-795 153-280 (549)
348 1a7j_A Phosphoribulokinase; tr 91.2 0.079 2.7E-06 57.4 2.4 22 670-691 7-28 (290)
349 2qtf_A Protein HFLX, GTP-bindi 91.0 0.082 2.8E-06 59.3 2.4 23 670-692 181-203 (364)
350 1nn5_A Similar to deoxythymidy 90.9 0.1 3.5E-06 53.0 2.9 24 668-691 9-32 (215)
351 3k53_A Ferrous iron transport 90.8 0.092 3.2E-06 56.0 2.5 22 670-691 5-26 (271)
352 2bwj_A Adenylate kinase 5; pho 90.8 0.11 3.7E-06 52.1 2.9 24 668-691 12-35 (199)
353 1qf9_A UMP/CMP kinase, protein 90.7 0.11 3.7E-06 51.7 2.8 23 668-690 6-28 (194)
354 1e6c_A Shikimate kinase; phosp 90.6 0.093 3.2E-06 51.4 2.2 23 669-691 3-25 (173)
355 1f6b_A SAR1; gtpases, N-termin 90.6 0.044 1.5E-06 55.4 -0.3 21 670-690 27-47 (198)
356 2pbr_A DTMP kinase, thymidylat 90.6 0.11 3.7E-06 51.8 2.6 22 670-691 2-23 (195)
357 1qvr_A CLPB protein; coiled co 90.5 0.37 1.3E-05 60.1 8.0 24 670-693 590-613 (854)
358 1mky_A Probable GTP-binding pr 90.5 0.095 3.2E-06 60.2 2.4 22 670-691 182-203 (439)
359 3fb4_A Adenylate kinase; psych 90.5 0.11 3.8E-06 53.1 2.7 21 670-690 2-22 (216)
360 2ga8_A Hypothetical 39.9 kDa p 90.4 0.11 3.8E-06 57.7 2.7 22 671-692 27-48 (359)
361 4ag6_A VIRB4 ATPase, type IV s 90.4 0.14 4.6E-06 57.9 3.5 26 668-693 35-60 (392)
362 2pt5_A Shikimate kinase, SK; a 90.3 0.12 4.1E-06 50.4 2.6 21 670-690 2-22 (168)
363 3cf2_A TER ATPase, transitiona 90.2 0.43 1.5E-05 58.7 7.9 104 671-797 241-357 (806)
364 1a5t_A Delta prime, HOLB; zinc 90.1 0.47 1.6E-05 52.2 7.5 113 669-791 25-149 (334)
365 1ukz_A Uridylate kinase; trans 90.0 0.13 4.4E-06 52.0 2.7 22 669-690 16-37 (203)
366 2iut_A DNA translocase FTSK; n 90.0 0.22 7.6E-06 58.7 4.9 26 668-693 214-239 (574)
367 3dl0_A Adenylate kinase; phosp 90.0 0.13 4.4E-06 52.6 2.7 21 670-690 2-22 (216)
368 2ged_A SR-beta, signal recogni 89.9 0.13 4.4E-06 51.2 2.5 22 670-691 50-71 (193)
369 1zd8_A GTP:AMP phosphotransfer 89.9 0.14 4.6E-06 53.0 2.8 22 669-690 8-29 (227)
370 3t34_A Dynamin-related protein 89.9 0.13 4.6E-06 57.2 2.9 32 660-691 25-57 (360)
371 1sxj_B Activator 1 37 kDa subu 89.7 0.44 1.5E-05 51.4 6.8 22 671-692 45-66 (323)
372 2iyv_A Shikimate kinase, SK; t 89.7 0.12 4.2E-06 51.2 2.2 23 669-691 3-25 (184)
373 1zak_A Adenylate kinase; ATP:A 89.6 0.13 4.4E-06 52.9 2.4 23 669-691 6-28 (222)
374 1z6t_A APAF-1, apoptotic prote 89.6 1.1 3.9E-05 52.9 11.0 114 669-794 148-271 (591)
375 2qen_A Walker-type ATPase; unk 89.6 0.51 1.8E-05 51.4 7.3 24 668-691 31-54 (350)
376 2grj_A Dephospho-COA kinase; T 89.6 0.15 5E-06 51.8 2.7 23 669-691 13-35 (192)
377 2xb4_A Adenylate kinase; ATP-b 89.6 0.14 4.9E-06 52.9 2.6 22 670-691 2-23 (223)
378 3a4m_A L-seryl-tRNA(SEC) kinas 89.5 0.16 5.3E-06 54.0 2.9 23 669-691 5-27 (260)
379 1uj2_A Uridine-cytidine kinase 89.3 0.15 5.2E-06 53.7 2.7 22 669-690 23-44 (252)
380 1g5t_A COB(I)alamin adenosyltr 89.3 1.8 6.2E-05 43.8 10.4 51 746-802 119-177 (196)
381 2cdn_A Adenylate kinase; phosp 89.2 0.16 5.5E-06 51.2 2.6 24 668-691 20-43 (201)
382 2dyk_A GTP-binding protein; GT 89.2 0.16 5.6E-06 48.4 2.5 22 670-691 3-24 (161)
383 2f6r_A COA synthase, bifunctio 89.1 0.16 5.6E-06 54.6 2.8 21 669-689 76-96 (281)
384 2ce2_X GTPase HRAS; signaling 89.1 0.17 5.9E-06 48.2 2.7 20 671-690 6-25 (166)
385 1aky_A Adenylate kinase; ATP:A 89.1 0.17 5.7E-06 52.0 2.7 23 669-691 5-27 (220)
386 1r6b_X CLPA protein; AAA+, N-t 89.1 0.33 1.1E-05 59.8 5.7 24 669-692 208-231 (758)
387 1fzq_A ADP-ribosylation factor 89.0 0.13 4.6E-06 50.8 1.8 21 670-690 18-38 (181)
388 1zuh_A Shikimate kinase; alpha 89.0 0.17 5.9E-06 49.4 2.6 23 669-691 8-30 (168)
389 1z2a_A RAS-related protein RAB 88.9 0.17 5.9E-06 48.6 2.5 21 670-690 7-27 (168)
390 2qag_A Septin-2, protein NEDD5 88.8 0.12 4.1E-06 57.8 1.5 30 660-691 31-60 (361)
391 1ltq_A Polynucleotide kinase; 88.6 0.19 6.4E-06 54.2 2.8 22 669-690 3-24 (301)
392 1g16_A RAS-related protein SEC 88.5 0.2 6.9E-06 48.2 2.7 20 671-690 6-25 (170)
393 1z0j_A RAB-22, RAS-related pro 88.4 0.19 6.7E-06 48.3 2.5 22 670-691 8-29 (170)
394 1sky_E F1-ATPase, F1-ATP synth 88.4 0.39 1.3E-05 55.2 5.3 27 668-694 151-177 (473)
395 1w36_D RECD, exodeoxyribonucle 88.3 0.51 1.8E-05 56.5 6.6 25 668-692 164-188 (608)
396 1ek0_A Protein (GTP-binding pr 88.3 0.2 6.9E-06 48.1 2.5 20 671-690 6-25 (170)
397 1moz_A ARL1, ADP-ribosylation 88.3 0.13 4.6E-06 50.4 1.3 20 670-689 20-39 (183)
398 1u8z_A RAS-related protein RAL 88.3 0.2 6.9E-06 47.9 2.5 21 670-690 6-26 (168)
399 1e4v_A Adenylate kinase; trans 88.3 0.21 7.2E-06 51.0 2.8 21 670-690 2-22 (214)
400 4dcu_A GTP-binding protein ENG 88.3 0.33 1.1E-05 56.0 4.7 30 661-690 15-45 (456)
401 1svi_A GTP-binding protein YSX 88.2 0.2 6.7E-06 49.8 2.5 22 670-691 25-46 (195)
402 2erx_A GTP-binding protein DI- 88.2 0.2 6.7E-06 48.3 2.4 21 670-690 5-25 (172)
403 1kao_A RAP2A; GTP-binding prot 88.2 0.21 7.1E-06 47.8 2.5 21 670-690 5-25 (167)
404 1ky3_A GTP-binding protein YPT 88.2 0.2 7E-06 48.8 2.5 21 670-690 10-30 (182)
405 1z08_A RAS-related protein RAB 88.2 0.21 7.1E-06 48.2 2.5 21 670-690 8-28 (170)
406 3q72_A GTP-binding protein RAD 88.0 0.17 5.9E-06 48.6 1.8 20 671-690 5-24 (166)
407 3pqc_A Probable GTP-binding pr 87.9 0.21 7.3E-06 49.3 2.5 21 670-690 25-45 (195)
408 1wms_A RAB-9, RAB9, RAS-relate 87.8 0.22 7.6E-06 48.4 2.5 21 670-690 9-29 (177)
409 3tlx_A Adenylate kinase 2; str 87.8 0.22 7.6E-06 52.2 2.6 21 670-690 31-51 (243)
410 2nzj_A GTP-binding protein REM 87.8 0.2 7E-06 48.5 2.2 22 670-691 6-27 (175)
411 2fn4_A P23, RAS-related protei 87.7 0.24 8.1E-06 48.2 2.7 22 670-691 11-32 (181)
412 2cxx_A Probable GTP-binding pr 87.7 0.21 7.3E-06 49.2 2.4 20 671-690 4-23 (190)
413 1r6b_X CLPA protein; AAA+, N-t 87.7 0.56 1.9E-05 57.7 6.6 22 671-692 491-512 (758)
414 3d3q_A TRNA delta(2)-isopenten 87.7 0.22 7.7E-06 55.0 2.7 23 669-691 8-30 (340)
415 1c1y_A RAS-related protein RAP 87.6 0.23 8E-06 47.6 2.5 20 671-690 6-25 (167)
416 2qmh_A HPR kinase/phosphorylas 87.6 0.27 9.3E-06 50.0 3.0 22 668-689 34-55 (205)
417 2lkc_A Translation initiation 87.6 0.22 7.6E-06 48.5 2.3 21 670-690 10-30 (178)
418 3b1v_A Ferrous iron uptake tra 87.5 0.22 7.5E-06 53.4 2.4 22 670-691 5-26 (272)
419 3q85_A GTP-binding protein REM 87.5 0.22 7.4E-06 48.0 2.2 20 671-690 5-24 (169)
420 2ohf_A Protein OLA1, GTP-bindi 87.4 0.19 6.7E-06 56.6 2.0 24 668-691 22-45 (396)
421 1upt_A ARL1, ADP-ribosylation 87.3 0.25 8.6E-06 47.6 2.5 21 670-690 9-29 (171)
422 2y8e_A RAB-protein 6, GH09086P 87.1 0.27 9.3E-06 47.7 2.7 21 670-690 16-36 (179)
423 4edh_A DTMP kinase, thymidylat 87.1 0.28 9.5E-06 50.5 2.9 25 668-692 6-30 (213)
424 1r2q_A RAS-related protein RAB 87.1 0.27 9.1E-06 47.2 2.5 21 670-690 8-28 (170)
425 3pxi_A Negative regulator of g 87.0 0.36 1.2E-05 59.4 4.3 97 671-791 204-302 (758)
426 2j37_W Signal recognition part 87.0 1.4 4.9E-05 51.2 9.2 24 669-692 102-125 (504)
427 3tw8_B RAS-related protein RAB 87.0 0.2 7E-06 48.7 1.7 21 670-690 11-31 (181)
428 2oil_A CATX-8, RAS-related pro 86.9 0.26 9.1E-06 48.9 2.5 21 670-690 27-47 (193)
429 4dsu_A GTPase KRAS, isoform 2B 86.9 0.27 9.3E-06 48.3 2.5 21 670-690 6-26 (189)
430 1z0f_A RAB14, member RAS oncog 86.8 0.28 9.6E-06 47.6 2.5 21 670-690 17-37 (179)
431 2bme_A RAB4A, RAS-related prot 86.7 0.29 1E-05 48.0 2.7 21 670-690 12-32 (186)
432 3con_A GTPase NRAS; structural 86.7 0.28 9.7E-06 48.5 2.5 21 670-690 23-43 (190)
433 1r8s_A ADP-ribosylation factor 86.6 0.29 9.9E-06 46.9 2.5 20 671-690 3-22 (164)
434 3bc1_A RAS-related protein RAB 86.6 0.28 9.7E-06 48.2 2.5 21 670-690 13-33 (195)
435 1nrj_B SR-beta, signal recogni 86.6 0.28 9.6E-06 49.8 2.5 22 670-691 14-35 (218)
436 3crm_A TRNA delta(2)-isopenten 86.6 0.29 9.9E-06 53.7 2.8 23 669-691 6-28 (323)
437 2a9k_A RAS-related protein RAL 86.6 0.29 9.8E-06 47.9 2.5 21 670-690 20-40 (187)
438 1m7b_A RND3/RHOE small GTP-bin 86.6 0.3 1E-05 48.2 2.7 21 670-690 9-29 (184)
439 3exa_A TRNA delta(2)-isopenten 86.5 0.3 1E-05 53.2 2.8 23 669-691 4-26 (322)
440 3clv_A RAB5 protein, putative; 86.4 0.29 1E-05 48.5 2.5 22 670-691 9-30 (208)
441 3ihw_A Centg3; RAS, centaurin, 86.4 0.29 1E-05 48.5 2.5 21 670-690 22-42 (184)
442 3lv8_A DTMP kinase, thymidylat 86.4 0.32 1.1E-05 51.0 2.8 25 668-692 27-51 (236)
443 2hxs_A RAB-26, RAS-related pro 86.4 0.3 1E-05 47.5 2.5 22 670-691 8-29 (178)
444 3tqf_A HPR(Ser) kinase; transf 86.3 0.53 1.8E-05 46.8 4.2 21 668-688 16-36 (181)
445 3be4_A Adenylate kinase; malar 86.2 0.33 1.1E-05 49.7 2.9 23 669-691 6-28 (217)
446 3v9p_A DTMP kinase, thymidylat 86.2 0.3 1E-05 50.9 2.5 24 668-691 25-48 (227)
447 3nbx_X ATPase RAVA; AAA+ ATPas 86.1 0.56 1.9E-05 54.7 5.0 23 670-692 43-65 (500)
448 3t1o_A Gliding protein MGLA; G 86.1 0.31 1.1E-05 48.1 2.5 22 670-691 16-37 (198)
449 2wsm_A Hydrogenase expression/ 86.1 0.34 1.2E-05 49.3 2.9 22 670-691 32-53 (221)
450 2efe_B Small GTP-binding prote 86.0 0.32 1.1E-05 47.4 2.5 21 670-690 14-34 (181)
451 2g6b_A RAS-related protein RAB 85.9 0.33 1.1E-05 47.3 2.5 21 670-690 12-32 (180)
452 2gno_A DNA polymerase III, gam 85.9 0.96 3.3E-05 49.2 6.5 98 670-791 20-123 (305)
453 2fg5_A RAB-22B, RAS-related pr 85.8 0.34 1.2E-05 48.2 2.7 22 670-691 25-46 (192)
454 4tmk_A Protein (thymidylate ki 85.8 0.36 1.2E-05 49.7 2.8 25 668-692 3-27 (213)
455 1vg8_A RAS-related protein RAB 85.7 0.33 1.1E-05 48.6 2.5 22 670-691 10-31 (207)
456 3zvl_A Bifunctional polynucleo 85.7 0.29 9.9E-06 55.8 2.3 23 668-690 258-280 (416)
457 2bov_A RAla, RAS-related prote 85.6 0.34 1.2E-05 48.4 2.5 22 670-691 16-37 (206)
458 2gf0_A GTP-binding protein DI- 85.5 0.36 1.2E-05 47.9 2.7 21 670-690 10-30 (199)
459 2gf9_A RAS-related protein RAB 85.5 0.35 1.2E-05 47.9 2.5 22 670-691 24-45 (189)
460 3foz_A TRNA delta(2)-isopenten 85.5 0.37 1.2E-05 52.5 2.8 24 668-691 10-33 (316)
461 2h92_A Cytidylate kinase; ross 85.3 0.32 1.1E-05 49.6 2.2 22 670-691 5-26 (219)
462 3tkl_A RAS-related protein RAB 85.3 0.36 1.2E-05 47.8 2.5 21 670-690 18-38 (196)
463 3kkq_A RAS-related protein M-R 85.2 0.37 1.3E-05 47.2 2.5 21 670-690 20-40 (183)
464 3cbq_A GTP-binding protein REM 85.2 0.25 8.7E-06 49.5 1.4 21 670-690 25-45 (195)
465 3pxi_A Negative regulator of g 85.2 0.92 3.2E-05 55.7 6.6 22 671-692 524-545 (758)
466 2ew1_A RAS-related protein RAB 85.1 0.39 1.3E-05 48.6 2.7 21 670-690 28-48 (201)
467 2ocp_A DGK, deoxyguanosine kin 85.1 0.41 1.4E-05 49.8 3.0 23 669-691 3-25 (241)
468 1mh1_A RAC1; GTP-binding, GTPa 85.1 0.38 1.3E-05 47.1 2.5 21 670-690 7-27 (186)
469 3dz8_A RAS-related protein RAB 85.1 0.39 1.3E-05 47.6 2.7 22 670-691 25-46 (191)
470 2fv8_A H6, RHO-related GTP-bin 85.0 0.43 1.5E-05 48.1 3.0 21 670-690 27-47 (207)
471 1wf3_A GTP-binding protein; GT 84.8 0.38 1.3E-05 52.3 2.6 23 669-691 8-30 (301)
472 3t5g_A GTP-binding protein RHE 84.8 0.41 1.4E-05 46.7 2.7 21 670-690 8-28 (181)
473 1ksh_A ARF-like protein 2; sma 84.8 0.34 1.2E-05 47.7 2.1 21 670-690 20-40 (186)
474 3oes_A GTPase rhebl1; small GT 84.8 0.41 1.4E-05 48.0 2.7 21 670-690 26-46 (201)
475 2xtp_A GTPase IMAP family memb 84.7 0.38 1.3E-05 50.6 2.5 22 670-691 24-45 (260)
476 2dby_A GTP-binding protein; GD 84.6 0.37 1.3E-05 53.9 2.5 21 671-691 4-24 (368)
477 3iev_A GTP-binding protein ERA 84.6 0.39 1.3E-05 52.3 2.6 23 669-691 11-33 (308)
478 1ak2_A Adenylate kinase isoenz 84.6 0.41 1.4E-05 49.6 2.6 23 669-691 17-39 (233)
479 2h17_A ADP-ribosylation factor 84.6 0.38 1.3E-05 47.3 2.3 22 670-691 23-44 (181)
480 2bcg_Y Protein YP2, GTP-bindin 84.5 0.42 1.5E-05 48.0 2.7 22 670-691 10-31 (206)
481 2cjw_A GTP-binding protein GEM 84.5 0.41 1.4E-05 47.9 2.5 21 670-690 8-28 (192)
482 2a5j_A RAS-related protein RAB 84.5 0.41 1.4E-05 47.5 2.5 21 670-690 23-43 (191)
483 2o52_A RAS-related protein RAB 84.5 0.39 1.3E-05 48.2 2.3 22 670-691 27-48 (200)
484 1z06_A RAS-related protein RAB 84.4 0.42 1.4E-05 47.3 2.5 21 670-690 22-42 (189)
485 1zj6_A ADP-ribosylation factor 84.4 0.42 1.4E-05 47.2 2.5 21 670-690 18-38 (187)
486 1zd9_A ADP-ribosylation factor 84.3 0.43 1.5E-05 47.3 2.5 21 670-690 24-44 (188)
487 1gwn_A RHO-related GTP-binding 84.3 0.44 1.5E-05 48.2 2.7 22 670-691 30-51 (205)
488 3iby_A Ferrous iron transport 84.2 0.41 1.4E-05 50.6 2.5 22 670-691 3-24 (256)
489 3reg_A RHO-like small GTPase; 84.2 0.44 1.5E-05 47.4 2.5 22 670-691 25-46 (194)
490 2h57_A ADP-ribosylation factor 84.1 0.32 1.1E-05 48.1 1.6 22 670-691 23-44 (190)
491 3bwd_D RAC-like GTP-binding pr 84.0 0.45 1.5E-05 46.4 2.5 21 670-690 10-30 (182)
492 3ld9_A DTMP kinase, thymidylat 83.9 0.49 1.7E-05 49.1 2.9 25 668-692 21-45 (223)
493 2atv_A RERG, RAS-like estrogen 83.9 0.45 1.5E-05 47.4 2.5 21 670-690 30-50 (196)
494 1zbd_A Rabphilin-3A; G protein 83.9 0.43 1.5E-05 47.7 2.4 21 670-690 10-30 (203)
495 3umf_A Adenylate kinase; rossm 83.8 0.49 1.7E-05 48.8 2.8 24 668-691 29-52 (217)
496 1x3s_A RAS-related protein RAB 83.8 0.46 1.6E-05 46.9 2.5 21 670-690 17-37 (195)
497 2p5s_A RAS and EF-hand domain 83.7 0.46 1.6E-05 47.5 2.5 21 670-690 30-50 (199)
498 3t5d_A Septin-7; GTP-binding p 83.7 0.37 1.3E-05 51.3 1.9 21 670-690 10-30 (274)
499 3a8t_A Adenylate isopentenyltr 83.7 0.49 1.7E-05 52.1 2.9 23 669-691 41-63 (339)
500 4hlc_A DTMP kinase, thymidylat 83.7 0.51 1.8E-05 48.2 2.8 25 668-692 2-26 (205)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=1.7e-109 Score=1021.44 Aligned_cols=728 Identities=21% Similarity=0.252 Sum_probs=584.1
Q ss_pred CcccHHH---HHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCC-CC-CCCCCCccccCcccHHHHHHHHHHCC
Q 002090 42 GTLNWEM---LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GL-RPESIPKAGCPVVNLRQTLDDLTRNG 116 (968)
Q Consensus 42 ~~l~~~~---~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~-g~-~~~~~pmaGvP~h~~~~yl~~Lv~~G 116 (968)
+++|||| |++|++||||||||||||||||||+||+++|++|+|++|+ ++ ..+++||||||+|+++.|+++||++|
T Consensus 8 ~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~~Lv~~G 87 (800)
T 1wb9_A 8 DAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQG 87 (800)
T ss_dssp GGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcEEeccccCCCCcCCccCCCHHHHHHHHHHHHHCC
Confidence 4689986 9999999999999999999999999999999999999998 32 23579999999999999999999999
Q ss_pred ceEEEEeccCCcccCCCceeEeEeeeecCCCccccccccCCCCCCCCCCcc----EEEEEcCCceEEEEEeccccceeEe
Q 002090 117 YSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP----VIGVSRSAKGYCIISILETMKTYSL 192 (968)
Q Consensus 117 ~kVaI~EQ~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~----~~gi~~~~~~~~~~~~~~~~~~~~v 192 (968)
||||||||+|+|+.+|++|+|+|++||||||.+++.+++++.+ ||++|+. .+|+ +|+|+|||+|. +
T Consensus 88 ~kVai~eQ~e~~~~~k~~v~R~v~~v~TpGT~~~~~~l~~~~~-n~l~ai~~~~~~~Gl-----a~~D~stg~~~----~ 157 (800)
T 1wb9_A 88 ESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQD-NLLAAIWQDSKGFGY-----ATLDISSGRFR----L 157 (800)
T ss_dssp CCEEEEEECSCGGGCSSSCCEEEEEEECTTTCCCGGGSCTTSC-CCEEEEEECSSCEEE-----EEECTTTCCEE----E
T ss_pred CeEEEEEccCCccccCCcceEEEEEEecCCcccccccccCCCC-cEEEEEEEcCCEEEE-----EEEECCCCEEE----E
Confidence 9999999999999999999999999999999999998888877 8876654 4666 66666666665 9
Q ss_pred ecCCCHHHHHHHHHcCCcceEEEcCCCccCCCCCccccccCCCCccccccccccccc-cCCchHHHHHHH-Hh----Hhc
Q 002090 193 EDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW-FEGDPVIELLLK-VK----ELY 266 (968)
Q Consensus 193 ~~~~~~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~-v~----~~~ 266 (968)
+++.+.+.|.++|.+++|+||+++++.... .+. .. ...++..+.| |+...+...+.. .. +.|
T Consensus 158 ~~~~d~~~l~~~l~~~~P~Eil~~~~~~~~-----~l~---~~----~~~~~~~~~~~f~~~~~~~~l~~~~~~~~l~~~ 225 (800)
T 1wb9_A 158 SEPADRETMAAELQRTNPAELLYAEDFAEM-----SLI---EG----RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGF 225 (800)
T ss_dssp ECCCSHHHHHHHHHHHCCSEEEEETTCCCG-----GGT---TT----CSSEEEECGGGGCHHHHHHHHHHHHTCSCSGGG
T ss_pred EEecCHHHHHHHHHhcCCeEEEEcCCCChH-----HHh---hc----ccceEEccccccChhHHHHHHHHHhCccchhhc
Confidence 998888899999999999999998764210 111 00 0113344567 554444444432 11 224
Q ss_pred CCCCcccccccccccCCcccc--e-eechhhhcccCCCCCCCccceEecCCCccCCCHHHHHhhccCCCc-----chHHH
Q 002090 267 GLENEVTFRNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-----YEIAS 338 (968)
Q Consensus 267 gl~~~~~~~~~~~~~~~~~~~--L-yLd~~Tq~~ll~~~~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~-----~sl~~ 338 (968)
|+.+.+ ....+++ | || ..||.+.+++ ...+..+...++|.||..|+++|+++++. |||++
T Consensus 226 ~~~~~~--------~~~~a~gall~Yl-~~~~~~~~~~---~~~~~~~~~~~~m~ld~~t~~~LEl~~~~~~~~~gSL~~ 293 (800)
T 1wb9_A 226 GVENAP--------RGLCAAGCLLQYA-KDTQRTTLPH---IRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLAS 293 (800)
T ss_dssp TCTTCH--------HHHHHHHHHHHHH-HHHHCSCCTT---CCCCEECCGGGBCEECHHHHHHTTSSSCTTSCSTTSHHH
T ss_pred cccCcH--------HHHHHHHHHHHHH-HHhhhhcccc---ccccEEEccCCEEEecHHHHHhccCcccCCCCccccHHH
Confidence 433322 3345555 4 99 8899887777 67778878889999999999999999984 58999
Q ss_pred HHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHH
Q 002090 339 TIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLV 418 (968)
Q Consensus 339 ~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~ 418 (968)
.+|+|+|+||+ |+|++||.+| ++|...|++||++|++|.+ ++..++..+..++ |++|++
T Consensus 294 ll~~t~T~~G~--------RlL~~wl~~P---l~d~~~I~~R~~~v~~~~~---~~~~l~~~L~~~~-------Dler~l 352 (800)
T 1wb9_A 294 VLDCTVTPMGS--------RMLKRWLHMP---VRDTRVLLERQQTIGALQD---FTAGLQPVLRQVG-------DLERIL 352 (800)
T ss_dssp HHCCCSSHHHH--------HHHHHHHHSC---BCCHHHHHHHHHHHHHTGG---GHHHHHHHHHTTC-------SHHHHH
T ss_pred HhCCCcCHHHH--------HHHHHHhhCC---CCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCCc-------cHHHHH
Confidence 99999999999 9999999999 9999999999999999997 7788888888777 999999
Q ss_pred HHHHHHhhchhhhhhccCCchhhhcccCCCch--hHHhhcchhhh--------------------------------hhh
Q 002090 419 EECRLASVRIGEMISLDGESDQKICSYDNIPS--EFFEDMESTWK--------------------------------GRV 464 (968)
Q Consensus 419 ~~~~~~~~~i~~~i~l~~e~~~~~~~~~~I~~--~~~~~ld~~~~--------------------------------g~v 464 (968)
+++..+...++|++.+ ...+..++. .++...+++.. +.|
T Consensus 353 ~r~~~~~~~~~dl~~l-------~~~l~~~~~l~~~l~~~~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I 425 (800)
T 1wb9_A 353 ARLALRTARPRDLARM-------RHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVI 425 (800)
T ss_dssp HHHHHTCCCHHHHHHH-------HHHHTTHHHHHHHHHSCCCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCB
T ss_pred HHHHcCCCCHHHHHHH-------HHHHHHHHHHHHHHHhcCcHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcCCee
Confidence 9999888888887664 222222222 11111000000 111
Q ss_pred hhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceeeeccccccccccCCCCccccc-
Q 002090 465 KRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIK- 543 (968)
Q Consensus 465 ~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~- 543 (968)
+....+.++++|+..+.+...|. .+..+++. .+|+.+.+++|++.+| |+++++.. ....++
T Consensus 426 -~~g~~~eLd~lr~~~~~~~~~l~----~~~~~~~~---~~~~~~l~i~~~~~~g------y~i~V~~~----~~~~vp~ 487 (800)
T 1wb9_A 426 -ASGYNEELDEWRALADGATDYLE----RLEVRERE---RTGLDTLKVGFNAVHG------YYIQISRG----QSHLAPI 487 (800)
T ss_dssp -CTTSCHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHTCTTCEEEEETTTE------EEEEEEHH----HHTTSCT
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHH---HhCCCceEEEecCcce------EEEEEecc----ccccCCc
Confidence 11223344567766666433332 44455554 5677778888888888 88877632 223455
Q ss_pred ccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 002090 544 QLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGR 623 (968)
Q Consensus 544 ~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~ 623 (968)
++++.++. .+.++|+|+++++.++++.+++.++.+++.+++.++...+..+.+.+..+...++.+|+++|+|..|.
T Consensus 488 ~~i~~~s~----~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~ 563 (800)
T 1wb9_A 488 NYMRRQTL----KNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAY 563 (800)
T ss_dssp TCEEEEEC----SSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeeec----cCCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666554 45567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCccccccccCcceeEEc-CCCccccccCCCceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc
Q 002090 624 RRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGL 699 (968)
Q Consensus 624 ~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~ 699 (968)
..+||+|+++++ ..+.++ ++||+.-...++++++||++| |++++|+||||||||||||+|+|+.++++.|.
T Consensus 564 ~~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~ 638 (800)
T 1wb9_A 564 TLNYTCPTFIDK-----PGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS 638 (800)
T ss_dssp HTTCBCCEECSS-----SCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCcccEECCC-----CCEEEEeccccEEEccCCCceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc
Confidence 999999999864 345555 567765322256899999999 68999999999999999999999999999999
Q ss_pred eeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-
Q 002090 700 MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN- 778 (968)
Q Consensus 700 ~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~- 778 (968)
+||+....++.++++|.+++..+++..+.|+|+.+|+++..++..+++|+|+||||||+|||+.++..+++++++++.+
T Consensus 639 ~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~ 718 (800)
T 1wb9_A 639 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK 718 (800)
T ss_dssp CBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT
T ss_pred ccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc
Confidence 9999888888888899999999999999999999999999999999999999999999999999999998999999987
Q ss_pred cCcEEEEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 002090 779 IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGV 858 (968)
Q Consensus 779 ~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~ 858 (968)
.|+++|++|||++++.+++....+.|++|.+....+++.|+|++.+|.+++|||+++|+++|+|++||+||++++.++|.
T Consensus 719 ~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~le~ 798 (800)
T 1wb9_A 719 IKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798 (800)
T ss_dssp TCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 59999999999999998888899999999999989999999999999999999999999999999999999999998863
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=3e-108 Score=1017.01 Aligned_cols=750 Identities=17% Similarity=0.163 Sum_probs=558.2
Q ss_pred cccHHH---HHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCCCccccCcccHHHHHHHHHHCCceE
Q 002090 43 TLNWEM---LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSV 119 (968)
Q Consensus 43 ~l~~~~---~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~g~~~~~~pmaGvP~h~~~~yl~~Lv~~G~kV 119 (968)
++|||| |+||++||||||||||||||||||+||+++|++|||++|+ + +++||||||+|+++.|++|||++||||
T Consensus 12 ~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~--~-~~~pmaGvP~ha~~~yl~rLv~~G~kV 88 (918)
T 3thx_B 12 IYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHL--D-HNFMTASIPTHRLFVHVRRLVAKGYKV 88 (918)
T ss_dssp TSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEE--E-TTEEEEEEEGGGHHHHHHHHHHHTCCE
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCceeec--C-CCeeEEeccHhHHHHHHHHHHHcCCcE
Confidence 589996 9999999999999999999999999999999999999998 2 469999999999999999999999999
Q ss_pred EEEeccCCccc-----CC-CceeEeEeeeecCCCcccccc---------------ccCCCCCCCCCCcc-----------
Q 002090 120 CIVEEVQGPTQ-----AR-SRKSRFISGHAHPGSPYVFGL---------------VGIDHDLDFPEPMP----------- 167 (968)
Q Consensus 120 aI~EQ~e~p~~-----ak-~~v~R~v~~vvTPGT~~~~~~---------------l~~~~~~~~~~a~~----------- 167 (968)
|||||+|+|+. +| ++|+|+|+|||||||.+++++ +.+..| ||++|+.
T Consensus 89 ai~eQ~E~p~~k~~~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~~~~~-nyL~ai~~~~~~~~~~~~ 167 (918)
T 3thx_B 89 GVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTST-SYLLCISENKENVRDKKK 167 (918)
T ss_dssp EEEEECSCHHHHTTSTTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSCTTSC-CCEEEEEEEC--------
T ss_pred EEEeccCChhhhhcccccCCceeeeEEEEECCCcccccccccccccccccccccccCCCCC-cEEEEEEecccccccccc
Confidence 99999999975 23 589999999999999998876 555555 7766543
Q ss_pred ---EEEEEcCCceEEEEEeccccceeEeecCCC---HHHHHHHHHcCCcceEEEcCCCccCCCCCccccc-cCCCCccc-
Q 002090 168 ---VIGVSRSAKGYCIISILETMKTYSLEDGLT---EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGE-YGEGGLLW- 239 (968)
Q Consensus 168 ---~~gi~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~-~~~~~~l~- 239 (968)
.+|+ +|+|+|||+|. ++++.+ .+.|.++|.+++|+||++++++... +.++.. +.......
T Consensus 168 ~~~~~Gl-----a~~D~sTGef~----~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~~~~~---~~~~~~~~~~~~~~~~ 235 (918)
T 3thx_B 168 GNIFIGI-----VGVQPATGEVV----FDSFQDSASRSELETRMSSLQPVELLLPSALSEQ---TEALIHRATSVSVQDD 235 (918)
T ss_dssp -CEEEEE-----EEEETTTTEEE----EEEEEECTTCHHHHHHHHHHCCSEEEEESSCCHH---HHHHHHHHHHSSCSSS
T ss_pred cCceEEE-----EEEEccCCeEE----EEEecCchhHHHHHHHHHhcCCeEEEecCCcchH---HHHHHHhhhccccccc
Confidence 2455 66666666655 666653 4689999999999999999865211 001000 00000000
Q ss_pred cccccccccc-cCCchHHHHHHH---Hh--HhcCCCCcccccccccccCCcccc--e-eechhhhcc-cCCCCCCCccce
Q 002090 240 GECIARHFEW-FEGDPVIELLLK---VK--ELYGLENEVTFRNVTVSYENRPRP--L-HLGTATQIG-AIPTEGIPCLLK 309 (968)
Q Consensus 240 ~~~~~~~~~~-f~~~~~~~ll~~---v~--~~~gl~~~~~~~~~~~~~~~~~~~--L-yLd~~Tq~~-ll~~~~~~sll~ 309 (968)
...+++.+.| |+...+...+.. +. +.+|.+....+.... .....+++ | || ..||++ .+.+ ++.+.
T Consensus 236 ~~~~~~~~~~~f~~~~a~~~l~~~f~~~~l~~~g~~~~~~~~~~~-~~~~~A~gall~Yl-~~~~~~~~l~~---~~~~~ 310 (918)
T 3thx_B 236 RIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLE-KPVICSLAAIIKYL-KEFNLEKMLSK---PENFK 310 (918)
T ss_dssp CCEEEEECGGGTSHHHHHHHHHHHCC--------------CCCCC-HHHHHHHHHHHHHH-HHTTCGGGGSC---GGGEE
T ss_pred ceeEEeccccccChhHHHHHHHHHhCccccccccchhhhhhhccc-HHHHHHHHHHHHHH-HHhcccccccc---cccce
Confidence 1234555677 654444444432 11 234433221110000 02234555 4 99 788885 4666 67777
Q ss_pred Ee-cCCCccCCCHHHHHhhccCCCc------chHHHHHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHH
Q 002090 310 VL-LPSNCSGLPILYVRDLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLD 382 (968)
Q Consensus 310 ~~-l~~~~~~m~~r~Lr~L~l~p~~------~sl~~~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~ 382 (968)
.| ....+|.||+.|+|||||+++. |||++.||+|+|+||+ |+|++||.+| ++|...|++||+
T Consensus 311 ~~~~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~--------RlLr~Wl~~P---L~d~~~I~~R~d 379 (918)
T 3thx_B 311 QLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGR--------RKLKKWVTQP---LLKLREINARLD 379 (918)
T ss_dssp ESCCTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHH--------HHHHHHHHSC---BCCHHHHHHHHH
T ss_pred eecCCCCEEEECHHHHHhcCCcccCCCCCCCCcHHHHHhhCCChHHH--------HHHHHHHhCc---CCCHHHHHHHHH
Confidence 76 4668999999999999999986 5999999999999999 9999999999 999999999999
Q ss_pred HHHHHh-cChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhhchhhhhhccCCchhhhcccCCCchhH---H-----
Q 002090 383 EILHMY-GNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEF---F----- 453 (968)
Q Consensus 383 ~v~~l~-~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~i~~~i~l~~e~~~~~~~~~~I~~~~---~----- 453 (968)
+|++|. +++.++..++..|..++ |+||+++++......++|++.+ ..++..++..+ .
T Consensus 380 aVe~l~~~~~~~~~~l~~~L~~i~-------DleRll~ri~~~~~~~~dl~~l-------~~~l~~l~~~l~~~l~~~~~ 445 (918)
T 3thx_B 380 AVSEVLHSESSVFGQIENHLRKLP-------DIERGLCSIYHKKCSTQEFFLI-------VKTLYHLKSEFQAIIPAVNS 445 (918)
T ss_dssp HHHHHHSCCCTHHHHHHHTTTTCC-------CHHHHHHHHHTTCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHccCc-------cHHHHHHHhccCcCCHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 999986 57788999999999988 9999999999999999998775 22222222100 0
Q ss_pred -----------hhcc------hhhhhhhhh-----c----c--cchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCC
Q 002090 454 -----------EDME------STWKGRVKR-----I----H--IEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPL 505 (968)
Q Consensus 454 -----------~~ld------~~~~g~v~~-----~----~--~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~t 505 (968)
..+. ..+...+.+ . . -...+++++...+.+..... .+....... ++
T Consensus 446 ~~~~~lL~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~l~~~--~~ 519 (918)
T 3thx_B 446 HIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVID----EIRMHLQEI--RK 519 (918)
T ss_dssp TCCCHHHHHHHTHHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHH----HHHHHHHHH--HH
T ss_pred hccCHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHH----HHHHHHHHH--HH
Confidence 0000 000000000 0 0 00112333333333222111 111111111 22
Q ss_pred CCCChhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHH
Q 002090 506 GGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVL 585 (968)
Q Consensus 506 gg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~ 585 (968)
++.++++.|+..+|.. |+++++ ......+| ..|...+++.+.++|+|+++++.++++..+++++...+.
T Consensus 520 ~i~~~~~~~~~~~g~~----y~iev~----~~~~~~vp---~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~ 588 (918)
T 3thx_B 520 ILKNPSAQYVTVSGQE----FMIEIK----NSAVSCIP---TDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCS 588 (918)
T ss_dssp HHTCTTCCCEEETTEE----EEEEEE----TTSGGGSC---SSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccceeEeecCCE----EEEEEc----HHHHhhCC---CeEEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777776621 444443 22333444 444455566777889999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcccCccccccccCcceeEEc-CCCcccccc--CCCceee
Q 002090 586 ELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDA--AEGSAVH 662 (968)
Q Consensus 586 eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~v~ 662 (968)
+.+.++...+..+...+..+...++.+|+++|+|..|...+||+|+++++ ..+.++ +.||+.-.. .++++|+
T Consensus 589 ~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~~~V~ 663 (918)
T 3thx_B 589 AEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEE-----RKIVIKNGRHPVIDVLLGEQDQYVP 663 (918)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESS-----CEEEEEEECCHHHHHHTCSCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccCC-----CcEEEEeccchhhhhhhccCCceec
Confidence 88889999999999999999999999999999999999999999999874 245555 556654211 2468999
Q ss_pred eeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHH
Q 002090 663 NTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEI 738 (968)
Q Consensus 663 ~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~ 738 (968)
||++| |++++|+||||||||||||+|+++.+++|.|+++|+..+.++.++++|.+++..+++..+.|+|+.+|+++
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~ 743 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDT 743 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHH
Confidence 99999 68999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhhhccccccc-cccceeEEEee----
Q 002090 739 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKN-AAYKAMGTEYL---- 812 (968)
Q Consensus 739 ~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~~~~-~~~~~~~~~~~---- 812 (968)
+.+++.+++|+||||||||+||||.++.++++++++++.+ .|+++|++|||++++++++..+. +.|+||.+...
T Consensus 744 ~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~ 823 (918)
T 3thx_B 744 AEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDES 823 (918)
T ss_dssp HHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC----
T ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEEEEEccccc
Confidence 9999999999999999999999999999999999999965 69999999999999998887764 89999998543
Q ss_pred ----------CCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 002090 813 ----------DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNC 860 (968)
Q Consensus 813 ----------~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~~~ 860 (968)
++++.|+|++.+|.+++|||++||+++|+|++||+||++++.++|...
T Consensus 824 ~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~~ 881 (918)
T 3thx_B 824 KLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLI 881 (918)
T ss_dssp -------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999997553
No 3
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=1.4e-106 Score=989.83 Aligned_cols=701 Identities=22% Similarity=0.272 Sum_probs=578.3
Q ss_pred cCcccHHH---HHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCC-CCCCCCCccccCcccHHHHHHHHHHCC
Q 002090 41 EGTLNWEM---LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGG-LRPESIPKAGCPVVNLRQTLDDLTRNG 116 (968)
Q Consensus 41 ~~~l~~~~---~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~g-~~~~~~pmaGvP~h~~~~yl~~Lv~~G 116 (968)
.+++|||| |++|++||||||||||||||||||+||+++|++|||+||+. ...+++||||||+|+++.|++|||++|
T Consensus 10 ~~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G 89 (765)
T 1ewq_A 10 PGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMG 89 (765)
T ss_dssp CSCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcEEeccCCCCCCCceecCcHHHHHHHHHHHHHCC
Confidence 35789996 99999999999999999999999999999999999999982 123579999999999999999999999
Q ss_pred ceEEEEeccCCcccCCCceeEeEeeeecCCCccccccccCCCCCCCCCCcc---EEEEEcCCceEEEEEeccccceeEee
Q 002090 117 YSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP---VIGVSRSAKGYCIISILETMKTYSLE 193 (968)
Q Consensus 117 ~kVaI~EQ~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~---~~gi~~~~~~~~~~~~~~~~~~~~v~ 193 (968)
||||||||+|+|+.+|++|+|+|++||||||.+++.++ ++.+ ||++|+. .+|+ +|+|+|||+|. ++
T Consensus 90 ~kVai~eQ~e~~~~~kg~v~R~v~~v~TpGT~~~~~~l-~~~~-n~l~ai~~~~~~Gl-----a~~D~stg~~~----~~ 158 (765)
T 1ewq_A 90 FRLAVADQVEPAEEAEGLVRREVTQLLTPGTLLQESLL-PREA-NYLAAIATGDGWGL-----AFLDVSTGEFK----GT 158 (765)
T ss_dssp CCEEEEEECSCGGGCSSSCCEEEEEEECGGGCCCGGGS-CSSC-CCEEEEEESSSEEE-----EEEETTTTEEE----EE
T ss_pred CEEEEEecCCCcccccCceeEEEEEEEcCceecchhhc-CCCC-cEEEEEEeCCEEEE-----EEEECCCCEEE----EE
Confidence 99999999999999999999999999999999999888 7666 8876653 4566 66666666665 99
Q ss_pred cCCCHHHHHHHHHcCCcceEEEcCCCccCCCCCccccccCCCCccccccccccccccCCchHHHHHHHHhHhcC---CCC
Q 002090 194 DGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYG---LEN 270 (968)
Q Consensus 194 ~~~~~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~ll~~v~~~~g---l~~ 270 (968)
++.+.+.|.++|.+++|+||+++.+... +. . +++..+.||+. ..+.+.|+ +++
T Consensus 159 ~~~d~~~l~~~l~~~~P~Eil~~~~~~~-------~~---------~-~~~~~~~~f~~-------~~l~~~~~~~~~~~ 214 (765)
T 1ewq_A 159 VLKSKSALYDELFRHRPAEVLLAPELLE-------NG---------A-FLDEFRKRFPV-------MLSEAPFEPEGEGP 214 (765)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECHHHHH-------CH---------H-HHHHHHHHCCS-------EEECCCCCCCSSSC
T ss_pred EecCHHHHHHHHHhcCCeEEEecCChHH-------HH---------H-HhhhcccccCH-------HHHHHHhcccccCC
Confidence 9887889999999999999999875310 00 1 12223345432 11123343 222
Q ss_pred cccccccccccCCcccc--e-eechhhhcccCCCCCCCccceEecCCCccCCCHHHHHhhccCCCc---chHHHHHHHHH
Q 002090 271 EVTFRNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA---YEIASTIQAIC 344 (968)
Q Consensus 271 ~~~~~~~~~~~~~~~~~--L-yLd~~Tq~~ll~~~~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~---~sl~~~I~~~~ 344 (968)
+ ....+++ | || ..||.+.+. ...+..+...++|.||..|+++|+++++. ++|++.+|+|+
T Consensus 215 -~--------~~~~a~g~ll~Yl-~~~~~~~~~----~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~~gsL~~~ld~t~ 280 (765)
T 1ewq_A 215 -L--------ALRRARGALLAYA-QRTQGGALS----LQPFRFYDPGAFMRLPEATLRALEVFEPLRGQDTLFSVLDETR 280 (765)
T ss_dssp -H--------HHHHHHHHHHHHH-HHHHTSCCC----CCCCEECCGGGSCBCCHHHHHHTTSSSCSSSCCCHHHHHCCCS
T ss_pred -H--------HHHHHHHHHHHHH-HHhhhcccc----cCCcEEECCCCeEEecHHHHHhCcCccCCCccchHHHHhCCCC
Confidence 1 2344555 4 99 888886554 35666767789999999999999999974 48999999999
Q ss_pred hhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHHH
Q 002090 345 KLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLA 424 (968)
Q Consensus 345 t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~ 424 (968)
|+||+ |+|++||.+| +.|...|++||++|++|.+++.++..++..+..++ |++|++.++...
T Consensus 281 T~~G~--------RlL~~wl~~P---l~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~-------Dler~l~r~~~~ 342 (765)
T 1ewq_A 281 TAPGR--------RLLQSWLRHP---LLDRGPLEARLDRVEGFVREGALREGVRRLLYRLA-------DLERLATRLELG 342 (765)
T ss_dssp SHHHH--------HHHHHHHHSC---CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCC-------CHHHHHHHHHTT
T ss_pred CHHHH--------HHHHHHhhCc---CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCC-------CHHHHHHHHHcC
Confidence 99999 9999999999 99999999999999999999999999999998888 999999999877
Q ss_pred hhchhhhhhc----------------------------------cCCchhhhcccCCCchhHHhhcchhhhhhhhhcccc
Q 002090 425 SVRIGEMISL----------------------------------DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIE 470 (968)
Q Consensus 425 ~~~i~~~i~l----------------------------------~~e~~~~~~~~~~I~~~~~~~ld~~~~g~v~~~~~~ 470 (968)
...+++++.+ +++||....+++.|++++++
T Consensus 343 ~~~~~dl~~l~~~l~~~~~l~~~l~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~---------------- 406 (765)
T 1ewq_A 343 RASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDP---------------- 406 (765)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCH----------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhccCCccCCCCCH----------------
Confidence 7777766553 12233333333444444444
Q ss_pred hhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceeeeccccccccccCCCCcccccc-ccccc
Q 002090 471 PEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAV 549 (968)
Q Consensus 471 ~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~-l~~~~ 549 (968)
.++++++..+.+...|. .+..+++. ++|+.+.+++|++.+| |+++++.. ....+++ +++.+
T Consensus 407 -~Ld~lr~~~~~~~~~l~----~~~~~~~~---~~~~~~l~i~~~~~~g------y~i~v~~~----~~~~vp~~~i~~~ 468 (765)
T 1ewq_A 407 -DLDALRAAHREGVAYFL----ELEERERE---RTGIPTLKVGYNAVFG------YYLEVTRP----YYERVPKEYRPVQ 468 (765)
T ss_dssp -HHHHHHHHHHHHHHHHH----HHHHHHHH---HHCCTTCEEEEETTTE------EEEEEEGG----GGGGSCTTCEEEE
T ss_pred -HHHHHHHHHHHHHHHHH----HHHHHHHH---HcCCCceEEEecccee------EEEEeehH----hhhcCCcceEEEE
Confidence 44578877777333332 55555555 5677788999999998 88877622 2344555 55555
Q ss_pred ccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccc
Q 002090 550 DSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVF 629 (968)
Q Consensus 550 s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~~ 629 (968)
+. .+.++|+|+++++.++++.+++.++..++.+++.++...+..+...+..+...++.+|+++++|..|...+||+
T Consensus 469 s~----~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~ 544 (765)
T 1ewq_A 469 TL----KDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVR 544 (765)
T ss_dssp EC----SSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBC
T ss_pred ec----cCCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCcee
Confidence 54 45677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCcceeEEc-CCCccccccCCCceeeeeEee-ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCC
Q 002090 630 PALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 707 (968)
Q Consensus 630 P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~l-g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~ 707 (968)
|++ + ..+.++ +.||+.-. ++++|+||++| |++++|+||||||||||||+|+|+..+++.|.++|+....
T Consensus 545 P~~-~------~~i~i~~~rHP~le~--~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~ 615 (765)
T 1ewq_A 545 PRF-G------DRLQIRAGRHPVVER--RTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAH 615 (765)
T ss_dssp CEE-S------SSEEEEEECCTTGGG--TSCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEE
T ss_pred ecc-C------CcEEEEEeECceEcc--CCceEeeeccCCCcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccc
Confidence 999 2 235554 45665422 56899999999 8999999999999999999999999999999999998888
Q ss_pred cchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEec
Q 002090 708 IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVST 787 (968)
Q Consensus 708 ~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~T 787 (968)
+++++++|.+++..|++..+.|+|+.+|.+++.++..+++|+|+|||||++||++.++..+++++++.+.+.|+++|++|
T Consensus 616 i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~T 695 (765)
T 1ewq_A 616 LPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFAT 695 (765)
T ss_dssp ECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred eeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 88888899999999999999999999999999999999999999999999999999999888899999988899999999
Q ss_pred cChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 002090 788 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACG 857 (968)
Q Consensus 788 H~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~ 857 (968)
|+++++.++ ..++.|++|.+....+++.|+|++.+|.+++|||+++|+++|+|++||+||++++.++|
T Consensus 696 H~~~l~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le 763 (765)
T 1ewq_A 696 HYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMA 763 (765)
T ss_dssp CCHHHHTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 999999877 67899999999888889999999999999999999999999999999999999999876
No 4
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=6.7e-101 Score=966.00 Aligned_cols=767 Identities=18% Similarity=0.178 Sum_probs=538.1
Q ss_pred CccccccCCccc-cCcccHHH---HHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCCCccccCccc
Q 002090 29 GLDVNLKNGSLK-EGTLNWEM---LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVN 104 (968)
Q Consensus 29 g~~~~~~~~~~~-~~~l~~~~---~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~g~~~~~~pmaGvP~h~ 104 (968)
.||+++-+-.-+ -+++|||| |+||++||||||||||||||||||+||+++|++|||++|++ ++||||||+|+
T Consensus 52 ~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYElf~~DA~~~a~~L~i~lt~~----~~pmaGvP~ha 127 (1022)
T 2o8b_B 52 DFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKG----NWAHSGFPEIA 127 (1022)
T ss_dssp TCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHCCCCCSS----SSCEEEEEGGG
T ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEEehhhHHHHHHhcCeEEecC----CCCCCCCchhH
Confidence 455554443321 13689996 99999999999999999999999999999999999999983 59999999999
Q ss_pred HHHHHHHHHHCCceEEEEeccCCccc--------C---C--CceeEeEeeeecCCCcccccc---ccCCCCCCCCCCcc-
Q 002090 105 LRQTLDDLTRNGYSVCIVEEVQGPTQ--------A---R--SRKSRFISGHAHPGSPYVFGL---VGIDHDLDFPEPMP- 167 (968)
Q Consensus 105 ~~~yl~~Lv~~G~kVaI~EQ~e~p~~--------a---k--~~v~R~v~~vvTPGT~~~~~~---l~~~~~~~~~~a~~- 167 (968)
++.|+++||++|||||||||+|+|++ + | ++|+|+|+|||||||.+++.+ +++..+ ||++|+.
T Consensus 128 ~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT~~d~~~~~~l~~~~~-n~l~ai~~ 206 (1022)
T 2o8b_B 128 FGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYS-KYLLSLKE 206 (1022)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTSCCCCTTSCCCSCSSC-CEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEEEECCCeeecccccccccCCCC-cEEEEEEE
Confidence 99999999999999999999999975 2 4 779999999999999988764 445555 6665543
Q ss_pred ----------EEEEEcCCceEEEEEeccccceeEeecCCC---HHHHHHHHHcCCcceEEEcCCCccCCCCCccccccCC
Q 002090 168 ----------VIGVSRSAKGYCIISILETMKTYSLEDGLT---EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGE 234 (968)
Q Consensus 168 ----------~~gi~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~~~ 234 (968)
.+|+ +|+|+|||+|. ++++.+ .+.|.++|.+++|+||+++.+..+.. +.++.....
T Consensus 207 ~~~~~~~~~~~~Gl-----a~~D~sTGe~~----~~e~~d~~~~~~L~~~L~~~~P~Eil~~~~~~~~~--~~~~~~~~~ 275 (1022)
T 2o8b_B 207 KEEDSSGHTRAYGV-----CFVDTSLGKFF----IGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKE--TKTILKSSL 275 (1022)
T ss_dssp EECSCC-CCEEEEE-----EEECTTTCCEE----EEEEEECSSCHHHHHHHHHSCEEEEEEETTTCCHH--HHHHHTTTT
T ss_pred ccccccCCCcEEEE-----EEEECCCCEEE----EEEecCchHHHHHHHHHHhcCCcEEEecCCccchH--HHHHHHhhh
Confidence 2444 55555555554 777653 36899999999999999987531100 000000000
Q ss_pred CCcccccccccccc--c--------------cCCch-------HHHHHHHHh---HhcCCCCcccccccccccCCcccc-
Q 002090 235 GGLLWGECIARHFE--W--------------FEGDP-------VIELLLKVK---ELYGLENEVTFRNVTVSYENRPRP- 287 (968)
Q Consensus 235 ~~~l~~~~~~~~~~--~--------------f~~~~-------~~~ll~~v~---~~~gl~~~~~~~~~~~~~~~~~~~- 287 (968)
...++... .... | |.... ....+.... +.+|+.... ....+..+++
T Consensus 276 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~a~~A~ga 348 (1022)
T 2o8b_B 276 SCSLQEGL--IPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGE-----KSELALSALGG 348 (1022)
T ss_dssp TTSEEEEE--CBTTTBCCHHHHHHHHHHTTTTSSSSCCCC-CCCCHHHHHTEECCSTTCSEECG-----GGHHHHHHHHH
T ss_pred hhhhhhhc--ccchhhcchhhHHhhhhhhhhcccccccccchhhHHHHHHhhcchhhccccccc-----ccHHHHHHHHH
Confidence 00000000 0001 1 11100 001111100 112221100 0002234445
Q ss_pred -e-eechhhhc--ccC-----CCCCCCc---------cceEecCCCccCCCHHHHHhhccCCCc------chHHHHHHHH
Q 002090 288 -L-HLGTATQI--GAI-----PTEGIPC---------LLKVLLPSNCSGLPILYVRDLLLNPPA------YEIASTIQAI 343 (968)
Q Consensus 288 -L-yLd~~Tq~--~ll-----~~~~~~s---------ll~~~l~~~~~~m~~r~Lr~L~l~p~~------~sl~~~I~~~ 343 (968)
| || ..||. .++ ++...++ ....+....+|.||+.|+|||||+++. |||++.||+|
T Consensus 349 ll~Yl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t 427 (1022)
T 2o8b_B 349 CVFYL-KKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTC 427 (1022)
T ss_dssp HHHHH-HHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCCHHHHHHTTCSSCCSSSSCCCSHHHHHCCC
T ss_pred HHHHH-HHhCcchhhhccccccccccccccccccccccccccCCCCeEEeCHHHHHhhcCCccCCCCCCCCcHHHHhCcC
Confidence 4 99 77774 111 1100011 111245678999999999999999974 5999999999
Q ss_pred HhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHH
Q 002090 344 CKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRL 423 (968)
Q Consensus 344 ~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~ 423 (968)
+|+||+ |+|++||.+| ++|...|.+||++|++|.+++.+++.++..|+.++ |+||+++|+..
T Consensus 428 ~T~mG~--------RLLr~WL~~P---L~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~-------DlERll~Ri~~ 489 (1022)
T 2o8b_B 428 HTPFGK--------RLLKQWLCAP---LCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLP-------DLERLLSKIHN 489 (1022)
T ss_dssp SSHHHH--------HHHHHHHHSC---BCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCC-------CHHHHHHHHHH
T ss_pred CCchhH--------HHHHHHHhCc---cCCHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCc-------cHHHHHHHHHh
Confidence 999999 9999999999 99999999999999999999999999999999988 99999999987
Q ss_pred -Hhh----------------------chhhhhhcc-------------C------Cchhhhccc--------CCCch--h
Q 002090 424 -ASV----------------------RIGEMISLD-------------G------ESDQKICSY--------DNIPS--E 451 (968)
Q Consensus 424 -~~~----------------------~i~~~i~l~-------------~------e~~~~~~~~--------~~I~~--~ 451 (968)
... .+++++... . ..+.+..-. ..+++ +
T Consensus 490 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~~~~~~~~~~l~~ 569 (1022)
T 2o8b_B 490 VGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTV 569 (1022)
T ss_dssp HHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTTTSSSSCBCCCHH
T ss_pred cCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHhhccccccchHHHHH
Confidence 221 123333210 0 011100000 11111 1
Q ss_pred HH----hhcchhh---hhhh-hhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCCCCChhhhhhhcccceee
Q 002090 452 FF----EDMESTW---KGRV-KRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWF 523 (968)
Q Consensus 452 ~~----~~ld~~~---~g~v-~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tgg~~~ki~y~~~~g~v~l 523 (968)
.. ..++.+. .|.+ -+..+.+.++++++....+...+. .+..+++. .+|+.+.++...+.++
T Consensus 570 ~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~----~~~~~~~~---~~~~~~l~~~~~~~~~---- 638 (1022)
T 2o8b_B 570 ELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL----EYLEKQRN---RIGCRTIVYWGIGRNR---- 638 (1022)
T ss_dssp HHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHH----HHHTSSGG---GSSCSCCEEECCGGGC----
T ss_pred HHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHH---HhCCCceeEEEecCce----
Confidence 11 1111100 1221 133346677777777776444332 44445554 5666555532223333
Q ss_pred eccccccccccCCCCccc-ccc-cccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 524 KGKKFRPTVWASTPGEEQ-IKQ-LKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINI 601 (968)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~-I~~-l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~ 601 (968)
|+++++.. .... +++ +++.+ +..+.++|+|+++++.++++..++.++...+.+++.++...+..+...
T Consensus 639 --y~i~v~~~----~~~~~vp~~~~~~~----t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 708 (1022)
T 2o8b_B 639 --YQLEIPEN----FTTRNLPEEYELKS----TKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKD 708 (1022)
T ss_dssp --CEEEECTT----TTSSCCCC-CEEEE----ETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred --EEEEEehh----hhcccCCCceEEee----eccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666521 2222 333 44444 445567899999999999999998887777888888888888889999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc--cCCcccCccccccccCcceeEEc-CCCccc-cccCCCceeeeeEee----------
Q 002090 602 LVFASMLLVIGKALFAHVSEGR--RRKWVFPALKDIELDGANCLKMN-GLSPYW-FDAAEGSAVHNTVDM---------- 667 (968)
Q Consensus 602 L~~~~~lla~Adal~~~a~~a~--~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~v~~~i~l---------- 667 (968)
+..+...++.+|+++++|..|. ..+||+|++++. .+....+.++ ++||+. ..+.++.+|+||++|
T Consensus 709 l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~-~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~ 787 (1022)
T 2o8b_B 709 WQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLP-EDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENG 787 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSSCEECCEECCT-TTSCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhccCCccCCccccC-CCCCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCC
Confidence 9999999999999999999988 789999999742 1112235555 456643 223356799999998
Q ss_pred -ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCC
Q 002090 668 -QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746 (968)
Q Consensus 668 -g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~ 746 (968)
|++++||||||||||||||+|+.+.+++|+|+|||++.+.++.+|.||.++|..|++..+.|+|+++|++++.+++.++
T Consensus 788 ~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~ 867 (1022)
T 2o8b_B 788 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHAT 867 (1022)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCC
Confidence 2799999999999999999996666899999999999888899999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEeccChhhhhccccccccccceeEEEe-------eCCceee
Q 002090 747 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY-------LDGQTVP 818 (968)
Q Consensus 747 ~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~-g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 818 (968)
+|+||||||||+|||+.++.++++++++++.+. |+++||+|||++++........+.+++|.+.. ..+.+.+
T Consensus 868 ~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ 947 (1022)
T 2o8b_B 868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITF 947 (1022)
T ss_dssp TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC-------------CE
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEecCcccCCCCceEE
Confidence 999999999999999999999999999999876 99999999999998765555566778877422 3467999
Q ss_pred eeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 002090 819 TWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 859 (968)
Q Consensus 819 ~y~l~~G~~~~s~a~~~A~~~glp~~vi~rA~~~~~~~~~~ 859 (968)
+|++.+|.+++|||+++|+++|+|++||+||++++.++|..
T Consensus 948 ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~ 988 (1022)
T 2o8b_B 948 LYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKM 988 (1022)
T ss_dssp EEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSS
T ss_pred EeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=7.5e-93 Score=882.16 Aligned_cols=752 Identities=18% Similarity=0.217 Sum_probs=562.5
Q ss_pred HHHHHHHhhCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCC----CC-CCCCCCccccCcccHHHHHHH-HHHCCceE
Q 002090 46 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG----GL-RPESIPKAGCPVVNLRQTLDD-LTRNGYSV 119 (968)
Q Consensus 46 ~~~~~~K~~~pd~vLlfR~GdFYE~f~~DA~~~~~~Lgl~lt~----g~-~~~~~pmaGvP~h~~~~yl~~-Lv~~G~kV 119 (968)
.+|+++|+||||||+|||+|||||+||+||+.+|++++++++. |. ...++|++++|.|+++.|+++ |+++||||
T Consensus 21 ~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~Ll~~g~rV 100 (934)
T 3thx_A 21 RFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRV 100 (934)
T ss_dssp HHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhhhhhhccCCCCCCCCCeeeeCHHHHHHHHHHHHHHcCCEE
Confidence 3469999999999999999999999999999999999999986 22 235799999999999999998 99999999
Q ss_pred EEEeccCCcccCCCceeEeEeeeecCCCcccc-ccccCCCCCCCCCCccEEEEEc----CCceEEEEEeccccceeEeec
Q 002090 120 CIVEEVQGPTQARSRKSRFISGHAHPGSPYVF-GLVGIDHDLDFPEPMPVIGVSR----SAKGYCIISILETMKTYSLED 194 (968)
Q Consensus 120 aI~EQ~e~p~~ak~~v~R~v~~vvTPGT~~~~-~~l~~~~~~~~~~a~~~~gi~~----~~~~~~~~~~~~~~~~~~v~~ 194 (968)
+||||.+++ .+++.++|+|++++||||..+. +++..+.+ ...++++++|.. ....|+.+.++.++|+|.+++
T Consensus 101 ei~~q~~~~-~~~~~~~r~l~~~~TPGnl~~~ed~L~~~~d--~~~~~~l~AIk~~~~~~~~~~Gla~~D~stge~~~~~ 177 (934)
T 3thx_A 101 EVYKNRAGN-KASKENDWYLAYKASPGNLSQFEDILFGNND--MSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCE 177 (934)
T ss_dssp EEEEECC-----CCCCCEEEEEEEBTTBCTTCHHHHC----------CCEEEEEECCSSSSCEEEEEEEETTTTEEEEEE
T ss_pred EEEecCCcc-cccCccceEEEEEECCCcHHHHHHHhhcccc--ccccceEEEEEEeecCCCcEEEEEEEECCCCeEEEEe
Confidence 999996554 4567799999999999999874 34422222 112334444432 122344444444444454888
Q ss_pred CCCH---HHHHHHHHcCCcceEEEcCCCccCCCCCcccccc-CCCCccccccccccccc-cCCchHHHHHHHHhHhcCCC
Q 002090 195 GLTE---DALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEY-GEGGLLWGECIARHFEW-FEGDPVIELLLKVKELYGLE 269 (968)
Q Consensus 195 ~~~~---~~l~~~L~~~~p~Eil~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~v~~~~gl~ 269 (968)
+.+. ..+.++|.+++|+||+++++..... ..++..+ ... ...++..+.| |+.+.+...+.. .++..
T Consensus 178 ~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~--~~~l~~~~~~~----~~~~~~~~~~~f~~~~~~~~l~~---~~~~~ 248 (934)
T 3thx_A 178 FPDNDQFSNLEALLIQIGPKECVLPGGETAGD--MGKLRQIIQRG----GILITERKKADFSTKDIYQDLNR---LLKGK 248 (934)
T ss_dssp EECCTTCHHHHHHHHHHCCSEEEEESSCCCHH--HHHHHHHHHHH----TCEEEEECGGGGCCSSHHHHHHH---HBCCC
T ss_pred cCCchHHHHHHHHHHhCCCeEEEeeCCCCccc--HHHHHHHHhhc----CceEEecchhhcCHHHHHHHHHH---Hhccc
Confidence 7654 4799999999999999987642100 0011110 000 1234555677 665554444443 22221
Q ss_pred Cc---cc--ccccccccCCcccc--e-eechhhhcccCCCCCCCccceEecCCCccCCCHHHHHhhccCCCc-------c
Q 002090 270 NE---VT--FRNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-------Y 334 (968)
Q Consensus 270 ~~---~~--~~~~~~~~~~~~~~--L-yLd~~Tq~~ll~~~~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~-------~ 334 (968)
.. .. |.......+..+++ | || ..||.+...+ ...+..+...++|.||+.|+|||+|+++. +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~a~gall~Yl-~~~~~~~~~~---~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~~ 324 (934)
T 3thx_A 249 KGEQMNSAVLPEMENQVAVSSLSAVIKFL-ELLSDDSNFG---QFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQ 324 (934)
T ss_dssp TTSCCCGGGCGGGGCHHHHHHHHHHHHHH-TGGGCGGGTT---CBEEEECCGGGBCEECHHHHHHTTSCC---------C
T ss_pred cccccccccccccccHHHHHHHHHHHHHH-HHhcCccccc---cccceEEcCCCeEEeCHHHHhhccccccCCCCCCCCC
Confidence 10 00 10000012345555 4 99 6788754333 34456667788999999999999999975 3
Q ss_pred hHHHHHHHHHhhhhhcccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHH-hcCccccccccccc
Q 002090 335 EIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILEL-LMDPTWVATGLKID 413 (968)
Q Consensus 335 sl~~~I~~~~t~~g~~l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~-~l~~~~~~~~~~~d 413 (968)
||++.||+|+|+||+ |+|++||.+| ++|...|.+||++|++|.+++.++..++. .|+.++ |
T Consensus 325 SL~~~ld~t~T~~G~--------RlLr~wl~~P---l~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~-------D 386 (934)
T 3thx_A 325 SLAALLNKCKTPQGQ--------RLVNQWIKQP---LMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFP-------D 386 (934)
T ss_dssp CHHHHHCCCSSHHHH--------HHHHHHHHSC---BCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCC-------C
T ss_pred cHHHHhccCCCHHHH--------HHHHHHHhCc---CCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCC-------C
Confidence 999999999999999 9999999999 99999999999999999999999999997 698888 9
Q ss_pred HHHHHHHHHHHhhchhhhhhccCCchhhhcccCCCch--hHHhh-----------------------c-------ch---
Q 002090 414 FETLVEECRLASVRIGEMISLDGESDQKICSYDNIPS--EFFED-----------------------M-------ES--- 458 (968)
Q Consensus 414 lerl~~~~~~~~~~i~~~i~l~~e~~~~~~~~~~I~~--~~~~~-----------------------l-------d~--- 458 (968)
++|+++++......++|++.+ ..++..+|. ..+.. + +.
T Consensus 387 leRl~~ri~~~~~~~~dl~~l-------~~~l~~~~~l~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~ 459 (934)
T 3thx_A 387 LNRLAKKFQRQAANLQDCYRL-------YQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLD 459 (934)
T ss_dssp HHHHHHHHHTTCCCHHHHHHH-------HHHHTTHHHHHHHHHHTCCSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHhcCCCCHHHHHHH-------HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 999999999999999988775 222222221 00000 0 00
Q ss_pred --hh-hh-hhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccCCC---CCChhhhhhhcccceeeeccccccc
Q 002090 459 --TW-KG-RVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLG---GPKGEILYAREHEAVWFKGKKFRPT 531 (968)
Q Consensus 459 --~~-~g-~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~tg---g~~~ki~y~~~~g~v~l~~~~~~~~ 531 (968)
+. .| .+-+..+.+.++++++..+.+...|. .+..+++. ++| +.+.++.|++.+| |+++++
T Consensus 460 ~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~----~~~~~~~~---~~~~~~~~~lk~~~~~~~G------y~i~v~ 526 (934)
T 3thx_A 460 MDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQ----STLISAAR---DLGLDPGKQIKLDSSAQFG------YYFRVT 526 (934)
T ss_dssp TTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHHH----HHHHHHHH---HSCCCBTTTBEEEECC--C------EEEEEC
T ss_pred cchhhcCCceeCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHH---HhCCCccceEEEEEeccce------EEEEEE
Confidence 00 01 11222345666777777776433332 33333333 233 3577888998888 888887
Q ss_pred cccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 532 VWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI 611 (968)
Q Consensus 532 ~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~ 611 (968)
.... .....+..|...++..+.++|+|+++++.++++.+++.++.+.+.+++.++...+..+...+..+...++.
T Consensus 527 ~~~~-----~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~ 601 (934)
T 3thx_A 527 CKEE-----KVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601 (934)
T ss_dssp HHHH-----TTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred echh-----hccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 11111234555566677789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccc--CCcccCccccccccCcceeEEc-CCCccccccCCCceeeeeEee----ceEEEEEecCCCCcchH
Q 002090 612 GKALFAHVSEGRR--RKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSL 684 (968)
Q Consensus 612 Adal~~~a~~a~~--~~~~~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTl 684 (968)
+|+++|+|..|.. .+||+|++++. +...+.++ +.||+.-...++++|+||++| |++++||||||||||||
T Consensus 602 lD~l~s~A~~a~~~~~~~~rP~~~~~---~~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTl 678 (934)
T 3thx_A 602 LDAVVSFAHVSNGAPVPYVRPAILEK---GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTY 678 (934)
T ss_dssp HHHHHHHHHHHHTSSSCCBCCEEECT---TSCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHhccCCCcCCeeccC---CCcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHH
Confidence 9999999998876 79999999862 22446665 556654333356799999999 68999999999999999
Q ss_pred HHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHH
Q 002090 685 LRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 685 lk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~ 764 (968)
||+++++.+++|.|+++|+..+.++.++.+|.+++..+++..+.|+|+.+|.+++.+++.+++|+||||||||+|||+.+
T Consensus 679 Lr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~ 758 (934)
T 3thx_A 679 IRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYD 758 (934)
T ss_dssp HHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHH
T ss_pred HHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHH
Confidence 99999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCcEEEEeccChhhhhccccccccccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcCCCH
Q 002090 765 GTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 843 (968)
Q Consensus 765 ~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~glp~ 843 (968)
+.++++++++++.+ .|+++||+|||++++.+++....+.+++|.+....+++.++|++.+|.+++|||+++|+++|+|+
T Consensus 759 ~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~ 838 (934)
T 3thx_A 759 GFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPK 838 (934)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCH
Confidence 99999999999986 59999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 002090 844 TIIQRAEDLYIACGVN 859 (968)
Q Consensus 844 ~vi~rA~~~~~~~~~~ 859 (968)
+||+||++++.++|..
T Consensus 839 ~vi~~A~~~~~~le~~ 854 (934)
T 3thx_A 839 HVIECAKQKALELEEF 854 (934)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999854
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.86 E-value=2e-21 Score=207.11 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=110.6
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCcc-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP- 709 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~~- 709 (968)
..+++++|| |++++|+||||||||||+|+|+|+... .+...++||....++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 468999999 899999999999999999999998510 122457787654322
Q ss_pred --hHH------------------------HHHhhcCCCCCc-cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002090 710 --YFD------------------------AIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 761 (968)
Q Consensus 710 --~~~------------------------~i~~~~~~~d~~-~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD 761 (968)
..+ .++..++..+.. ....+++|+||+|+..++++ +.+|+++||||||+|||
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 111 234455665543 66788999999998777666 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hcCcEEEEeccChhhhhcccccccccccee
Q 002090 762 TAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~-~~g~~vl~~TH~~el~~~~~~~~~~~~~~~ 807 (968)
+.....+ ..+++.++ +.|+|+|++||+++++.++++.-.+.++.+
T Consensus 178 ~~~~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i 223 (235)
T 3tif_A 178 SKTGEKI-MQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223 (235)
T ss_dssp HHHHHHH-HHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEE
T ss_pred HHHHHHH-HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 9888888 45555554 459999999999998776665444444443
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.86 E-value=3.3e-21 Score=204.02 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=110.1
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------------hhcCceeccCcCCcc
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP 709 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------------a~~g~~vp~~~~~~~ 709 (968)
++.+++++|| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP 95 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC
Confidence 4679999999 899999999999999999999998510 122347777643221
Q ss_pred h------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 Y------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 ~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. ++.++..++..+......+++|+||+|...++++ +.+|+++||||||+|||+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 1 1235566788777788889999999998777666 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
...+ ..+++.+++.|.|+|++||+.+++..+++.
T Consensus 176 ~~~~-~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v 209 (224)
T 2pcj_A 176 TKRV-MDIFLKINEGGTSIVMVTHERELAELTHRT 209 (224)
T ss_dssp HHHH-HHHHHHHHHTTCEEEEECSCHHHHTTSSEE
T ss_pred HHHH-HHHHHHHHHCCCEEEEEcCCHHHHHhCCEE
Confidence 8887 455555665599999999999887655543
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.86 E-value=1.7e-21 Score=212.11 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=114.4
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH----------------------hhhcCceec
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------------LGICGLMVP 702 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~----------------------la~~g~~vp 702 (968)
.++.+.|.++..+++++|| |++++|+||||||||||+|+|+|+.. ..+...+||
T Consensus 11 ~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~ 90 (275)
T 3gfo_A 11 EELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVF 90 (275)
T ss_dssp EEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEEC
T ss_pred EEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEE
Confidence 3444555555679999999 89999999999999999999999851 112234778
Q ss_pred cCcC--C--cch---------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 703 AESA--S--IPY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 703 ~~~~--~--~~~---------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
|... . ... ++.++..++..+......+++|+||+|+..++++ +.+|+++|||||
T Consensus 91 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 91 QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp SSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred cCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 7541 1 111 2345666788777778889999999998777666 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-hcCcEEEEeccChhhhh-ccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~-~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
|+|||+.....+ ..+++.++ +.|.|+|++||+++++. ++++.
T Consensus 171 ts~LD~~~~~~i-~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv 214 (275)
T 3gfo_A 171 TAGLDPMGVSEI-MKLLVEMQKELGITIIIATHDIDIVPLYCDNV 214 (275)
T ss_dssp TTTCCHHHHHHH-HHHHHHHHHHHCCEEEEEESCCSSGGGGCSEE
T ss_pred cccCCHHHHHHH-HHHHHHHHhhCCCEEEEEecCHHHHHHhCCEE
Confidence 999999888888 55555565 56999999999998764 45543
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=4.3e-21 Score=206.88 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=111.4
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCC
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESAS 707 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~ 707 (968)
+.+.+ +++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....
T Consensus 21 l~~~y-~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l 99 (256)
T 1vpl_A 21 LRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGA 99 (256)
T ss_dssp EEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCC
T ss_pred EEEEE-CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCC
Confidence 33444 35689999999 899999999999999999999998511 1123467776432
Q ss_pred cch------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 708 IPY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 708 ~~~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
++. ++.++..++..+......+++|+||+|+..++++ +.+|+++||||||+|||+
T Consensus 100 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~ 179 (256)
T 1vpl_A 100 YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179 (256)
T ss_dssp CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCH
Confidence 211 1234556677777778889999999998776665 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
.....+ ..+++.+.+.|.|+|++||+++.+. ++++.
T Consensus 180 ~~~~~l-~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v 216 (256)
T 1vpl_A 180 LNAREV-RKILKQASQEGLTILVSSHNMLEVEFLCDRI 216 (256)
T ss_dssp HHHHHH-HHHHHHHHHTTCEEEEEECCHHHHTTTCSEE
T ss_pred HHHHHH-HHHHHHHHhCCCEEEEEcCCHHHHHHHCCEE
Confidence 888888 5555556666999999999998765 34443
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.85 E-value=4.5e-21 Score=215.09 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=118.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccCcCCcch
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESASIPY 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~~~~~~~ 710 (968)
++..+++++|| |++++|+||||||||||||+|+|+... .+...+|||+.+.++.
T Consensus 15 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ 94 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTT
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCC
Confidence 46789999999 899999999999999999999998511 1223467776554321
Q ss_pred ------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 002090 711 ------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKG 765 (968)
Q Consensus 711 ------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~ 765 (968)
+.+++..+++.+...+..+++|+||+|+..++++ +.+|+++||||||+|||+..+
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r 174 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 2345566777777788889999999998877766 899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEeccChhhhh-cccccccccccee
Q 002090 766 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 807 (968)
Q Consensus 766 ~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~~~~~~~~~ 807 (968)
..+...+.+..++.|.|+|++|||.+.+. ++++...+..+.+
T Consensus 175 ~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i 217 (359)
T 3fvq_A 175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRI 217 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEE
Confidence 99866777777778999999999998764 5555444434433
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.85 E-value=4.1e-21 Score=208.33 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=109.5
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccCcCCc---c
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASI---P 709 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~~~~~---~ 709 (968)
+++.+++++|| |++++|+||||||||||+|+|+|+.. ..+...++|+..... .
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCB
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCC
Confidence 46789999999 89999999999999999999999851 122334666653221 1
Q ss_pred -------------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CC------CCcEEEEeCCCCCCCHH
Q 002090 710 -------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TT------SRSLVLIDEICRGTETA 763 (968)
Q Consensus 710 -------------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~------~~~LlLlDEp~~GlD~~ 763 (968)
.++.++..++..+......+++|+|++|+..++++ +. +|+++||||||+|||+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 12345667787777778889999999998887766 55 99999999999999998
Q ss_pred HHHHHHHHHHHHHHh-cCcEEEEeccChhhhh-ccccc
Q 002090 764 KGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~~-~~~~~ 799 (968)
....+ ..+++.+++ .++|+|++|||++++. ++++.
T Consensus 182 ~~~~i-~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 182 HQQHT-LRLLRQLTRQEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp HHHHH-HHHHHHHHHHSSEEEEEECSCHHHHHHHCSEE
T ss_pred HHHHH-HHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEE
Confidence 88888 455555554 4689999999998864 45544
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.84 E-value=1.1e-20 Score=204.53 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=110.7
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceeccC
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAE 704 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~~ 704 (968)
+.+.+ +++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+.
T Consensus 30 l~~~y-~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~ 108 (263)
T 2olj_A 30 LKKSF-GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQR 108 (263)
T ss_dssp EEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSS
T ss_pred EEEEE-CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCC
Confidence 34444 45679999999 899999999999999999999998511 1123467776
Q ss_pred cCCcch-------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 705 SASIPY-------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 705 ~~~~~~-------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
...++. ++.++..++..+......+++|+||+|+..++++ +.+|+++||||||+
T Consensus 109 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts 188 (263)
T 2olj_A 109 FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTS 188 (263)
T ss_dssp CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 432211 1234556677666677788999999998777665 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
|||+.....+ ..+++.+.+.|.|+|++||+++.+. ++++.
T Consensus 189 ~LD~~~~~~~-~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v 229 (263)
T 2olj_A 189 ALDPEMVGEV-LSVMKQLANEGMTMVVVTHEMGFAREVGDRV 229 (263)
T ss_dssp TSCHHHHHHH-HHHHHHHHHTTCEEEEECSCHHHHHHHCSEE
T ss_pred cCCHHHHHHH-HHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE
Confidence 9999888887 4555556656999999999998764 45543
No 13
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.84 E-value=1.2e-20 Score=211.71 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=112.8
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-----------------------hhhcCceeccCcCCcch-
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-----------------------LGICGLMVPAESASIPY- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-----------------------la~~g~~vp~~~~~~~~- 710 (968)
..+++++|| |++++|+||||||||||+|+|+|+.. ..+...+|||....++.
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence 468999999 89999999999999999999999851 11234578887543321
Q ss_pred -----------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 711 -----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 711 -----------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
+..++..+++.+......+++|+||+|+..|+++ +.+|+++||||||+|||+....
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 2345667788877788889999999998887776 8999999999999999999888
Q ss_pred HHHHHHHHHHH-hcCcEEEEeccChhhhh-cccccccc
Q 002090 767 CIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNA 802 (968)
Q Consensus 767 ~i~~~ll~~l~-~~g~~vl~~TH~~el~~-~~~~~~~~ 802 (968)
.+ ..+++.++ +.|.|+|++||+++.+. ++++...+
T Consensus 201 ~i-~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl 237 (366)
T 3tui_C 201 SI-LELLKDINRRLGLTILLITHEMDVVKRICDCVAVI 237 (366)
T ss_dssp HH-HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 88 45555554 56999999999998864 45544333
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=1.3e-20 Score=203.53 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=108.4
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCc
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAES 705 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~ 705 (968)
+.+.+ +++.+++++|| |++++|+||||||||||+|+|+|+... .+...++|+..
T Consensus 13 l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 91 (257)
T 1g6h_A 13 IVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTP 91 (257)
T ss_dssp EEEEE-TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCC
T ss_pred eEEEE-CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCC
Confidence 33444 35679999999 899999999999999999999998510 11234666653
Q ss_pred CCcc---h----------------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCC
Q 002090 706 ASIP---Y----------------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTS 747 (968)
Q Consensus 706 ~~~~---~----------------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~ 747 (968)
..++ . ++.++..++..+......+++|+||+|+..++++ +.+
T Consensus 92 ~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~ 171 (257)
T 1g6h_A 92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN 171 (257)
T ss_dssp GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcC
Confidence 2211 1 1234455666666667778999999998777665 899
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cccc
Q 002090 748 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 798 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~ 798 (968)
|+++||||||+|||+.....+ ..+++.+++.|.|+|++||+++.+. ++++
T Consensus 172 p~lllLDEPts~LD~~~~~~l-~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~ 222 (257)
T 1g6h_A 172 PKMIVMDEPIAGVAPGLAHDI-FNHVLELKAKGITFLIIEHRLDIVLNYIDH 222 (257)
T ss_dssp CSEEEEESTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECSCCSTTGGGCSE
T ss_pred CCEEEEeCCccCCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 999999999999999888888 5555556666999999999988754 4444
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.83 E-value=1.3e-20 Score=211.31 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=112.5
Q ss_pred ccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcc
Q 002090 652 WFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP 709 (968)
Q Consensus 652 ~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~ 709 (968)
.+.+.+++.+++++|| |++++|+||||||||||||+|+|+... .+...+|||....++
T Consensus 21 ~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 100 (355)
T 1z47_A 21 EKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQ 100 (355)
T ss_dssp EECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCT
T ss_pred EEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCC
Confidence 3344345679999999 899999999999999999999999621 112346777654332
Q ss_pred h------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 710 Y------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 710 ~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
. +++++..+++.+...+..+++|+||+|+..++++ +.+|+++||||||+|||+..
T Consensus 101 ~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 180 (355)
T 1z47_A 101 HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180 (355)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1 2345566787777788889999999998777666 89999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 765 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 765 ~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
+..+...+.+..++.|.|+|++|||.+.+. ++++.
T Consensus 181 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri 216 (355)
T 1z47_A 181 RRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRV 216 (355)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEE
Confidence 888855554444456999999999998763 45544
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=1.2e-20 Score=212.86 Aligned_cols=151 Identities=19% Similarity=0.145 Sum_probs=116.3
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch----
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~---- 710 (968)
++..+++++|| |++++|+||||||||||||+|+|+... .+...+|+|+.+.++.
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHH
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHH
Confidence 46789999999 899999999999999999999999621 1123467777654432
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
++.++..+++.+......+++|+||+|+..|+++ +.+|+++||||||+|||+..+..+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~ 173 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 2345666788877888899999999998887766 8999999999999999999888885
Q ss_pred HHHHHHHHhcCcEEEEeccChhhh-hcccccccccccee
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
..+.+..++.|.|+|++|||++.+ .++++...+..+.+
T Consensus 174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 544444455699999999999876 45665544444443
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.83 E-value=1.9e-20 Score=201.72 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=109.2
Q ss_pred ccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------hhcCceeccCcCCc---ch-------
Q 002090 652 WFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GICGLMVPAESASI---PY------- 710 (968)
Q Consensus 652 ~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a~~g~~vp~~~~~~---~~------- 710 (968)
.+.+.+++.+++++|| |++++|+||||||||||+|+|+|+... .+...|+|+....+ ..
T Consensus 11 ~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~ 90 (253)
T 2nq2_C 11 GFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMG 90 (253)
T ss_dssp EEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGG
T ss_pred EEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHh
Confidence 3444325689999999 899999999999999999999998632 12234667653221 01
Q ss_pred ------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002090 711 ------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGS 771 (968)
Q Consensus 711 ------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ 771 (968)
++.++..++..+......+++|+||+|+..++++ +.+|+++||||||+|||+.....+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~- 169 (253)
T 2nq2_C 91 RSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS- 169 (253)
T ss_dssp GGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHH-
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-
Confidence 2234556677666677788999999998777665 89999999999999999988888854
Q ss_pred HHHHHHhc-CcEEEEeccChhhh-hcccc
Q 002090 772 IIETLDNI-GCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 772 ll~~l~~~-g~~vl~~TH~~el~-~~~~~ 798 (968)
++..+.+. |.|+|++||+++.+ .++++
T Consensus 170 ~l~~l~~~~g~tvi~vtHd~~~~~~~~d~ 198 (253)
T 2nq2_C 170 LLIDLAQSQNMTVVFTTHQPNQVVAIANK 198 (253)
T ss_dssp HHHHHHHTSCCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 44555554 99999999999876 44543
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=2.5e-20 Score=199.36 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=108.1
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------------hhcCceeccCc
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAES 705 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------------a~~g~~vp~~~ 705 (968)
+.+.+ +++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+..
T Consensus 12 l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 90 (240)
T 1ji0_A 12 LHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGR 90 (240)
T ss_dssp EEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSC
T ss_pred EEEEE-CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCC
Confidence 33444 34679999999 899999999999999999999998510 11134677754
Q ss_pred CCcc---h--------------------HHHHHhhc-CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002090 706 ASIP---Y--------------------FDAIMLHM-KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGT 760 (968)
Q Consensus 706 ~~~~---~--------------------~~~i~~~~-~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~Gl 760 (968)
..++ . ++.++..+ +..+......+++|+|++|+..++++ +.+|+++||||||+||
T Consensus 91 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 170 (240)
T 1ji0_A 91 RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170 (240)
T ss_dssp CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTC
T ss_pred ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 3221 1 12344444 35555666778999999998776665 8999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 761 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 761 D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
|+.....+ ..+++.+.+.|.|+|++||+++.+ .++++.
T Consensus 171 D~~~~~~l-~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v 209 (240)
T 1ji0_A 171 APILVSEV-FEVIQKINQEGTTILLVEQNALGALKVAHYG 209 (240)
T ss_dssp CHHHHHHH-HHHHHHHHHTTCCEEEEESCHHHHHHHCSEE
T ss_pred CHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 99888888 455555665799999999998764 455543
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.83 E-value=1.8e-20 Score=202.96 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=108.5
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH------------hh---------------------hcCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------LG---------------------ICGL 699 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~------------la---------------------~~g~ 699 (968)
+++.+++++|| |++++|+||||||||||+|+|+|+.. +. +...
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 35679999999 89999999999999999999999851 10 1134
Q ss_pred eeccCcCCcc---h----------------------HHHHHhhcCCCCC-ccCCccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 700 MVPAESASIP---Y----------------------FDAIMLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 700 ~vp~~~~~~~---~----------------------~~~i~~~~~~~d~-~~~~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
++|+....++ . ++.++..++..+. .....+++|+||+|+..++++ +.+|+++|
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 176 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6777543221 1 1234556677666 677888999999998777665 89999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
|||||+|||+.....+. .+++.+++.|.|+|++||+++.+. ++++.
T Consensus 177 LDEPts~LD~~~~~~~~-~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v 223 (262)
T 1b0u_A 177 FDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHV 223 (262)
T ss_dssp EESTTTTSCHHHHHHHH-HHHHHHHHTTCCEEEECSCHHHHHHHCSEE
T ss_pred EeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999998888884 555556666999999999998764 45543
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.83 E-value=3e-20 Score=209.01 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=113.2
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch----
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~---- 710 (968)
+++.++++++| |++++|+||||||||||||+|+|+... .+...+|||..+.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 45679999999 899999999999999999999999611 1123467776543321
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
+++++..+++.+...+..+++|+||+|...++++ +.+|+++||||||+|||+..+..+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 173 (359)
T 2yyz_A 94 ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMR 173 (359)
T ss_dssp HHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 2345666777777778889999999998777666 9999999999999999999888885
Q ss_pred HHHHHHHHhcCcEEEEeccChhhh-hccccccccccc
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
..+.+..++.|.|+|++|||.+.+ .++++...+..+
T Consensus 174 ~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G 210 (359)
T 2yyz_A 174 AEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQG 210 (359)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 555544445699999999998876 455544333333
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.82 E-value=3e-20 Score=208.27 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=112.8
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch-----
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY----- 710 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~----- 710 (968)
++ ++++++| |++++|+||||||||||||+|+|+... .+...+|||....++.
T Consensus 13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 45 9999999 899999999999999999999999511 1223478877554321
Q ss_pred ----------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002090 711 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSII 773 (968)
Q Consensus 711 ----------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll 773 (968)
+++++..+++.+...+..+++|+|++|+..++++ +.+|+++||||||+|||+.....+...+.
T Consensus 92 nl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~ 171 (348)
T 3d31_A 92 NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171 (348)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 2345666788777788889999999998877766 89999999999999999988888855554
Q ss_pred HHHHhcCcEEEEeccChhhh-hccccccccccc
Q 002090 774 ETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 774 ~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
+..++.|.|+|++|||.+.+ .++++...+..+
T Consensus 172 ~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G 204 (348)
T 3d31_A 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204 (348)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHCSEEEEESSS
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 44345699999999998865 455544333333
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.82 E-value=3.6e-20 Score=208.54 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=114.3
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch----
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~---- 710 (968)
+++.++++++| |++++|+||||||||||||+|+|+... .+...+|||..+.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 45679999999 899999999999999999999999521 1123467776544321
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
+++++..+++.+...+..+++|+|++|+..++++ +.+|+++||||||+|||+..+..+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 173 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR 173 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 2245666788877888899999999998777666 8999999999999999999888885
Q ss_pred HHHHHHHHhcCcEEEEeccChhhh-hccccccccccce
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 806 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~ 806 (968)
..+.+..++.|.|+|++|||.+.+ .++++...+..+.
T Consensus 174 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 211 (362)
T 2it1_A 174 AELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGE 211 (362)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 555444345699999999998876 4555544333333
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.82 E-value=2.8e-20 Score=195.11 Aligned_cols=140 Identities=13% Similarity=0.113 Sum_probs=105.8
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh---------------hhcCceeccCcCCcc--
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------GICGLMVPAESASIP-- 709 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l---------------a~~g~~vp~~~~~~~-- 709 (968)
+.+.+. + .++++++| |++++|+||||||||||||+|+|+... .+...|+|+....++
T Consensus 16 ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T 1sgw_A 16 LSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKI 93 (214)
T ss_dssp EEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTS
T ss_pred EEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCC
Confidence 334443 4 89999999 899999999999999999999998521 122346777643221
Q ss_pred -h-------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 710 -Y-------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 710 -~-------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
. ++.++..++..+. ....+++|+||+|+..++++ +.+|+++||||||+|||+.....+
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l 172 (214)
T 1sgw_A 94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172 (214)
T ss_dssp BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHH
T ss_pred CHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHH
Confidence 1 1234455666665 67778999999998777665 899999999999999999888888
Q ss_pred HHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 769 AGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 769 ~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
. .+++.+.+.|.++|++||+++.+.
T Consensus 173 ~-~~l~~~~~~g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 173 L-KSILEILKEKGIVIISSREELSYC 197 (214)
T ss_dssp H-HHHHHHHHHHSEEEEEESSCCTTS
T ss_pred H-HHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4 445555555899999999988754
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.82 E-value=5.3e-20 Score=197.55 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=104.1
Q ss_pred cccccC-CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccCc
Q 002090 651 YWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAES 705 (968)
Q Consensus 651 ~~~~~~-~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~~ 705 (968)
+.+.+. +++.+++++|| |++++|+||||||||||+|+|+|+.. ..+...++|+..
T Consensus 13 l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 92 (247)
T 2ff7_A 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDN 92 (247)
T ss_dssp EEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred EEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCC
Confidence 344453 35689999999 89999999999999999999999851 112234777765
Q ss_pred CCcc--hHHHH---------------HhhcCCC-----------CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 706 ASIP--YFDAI---------------MLHMKSY-----------DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 706 ~~~~--~~~~i---------------~~~~~~~-----------d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
..++ ..+++ +..+++. ..+....+++|+||+|+..++++ +.+|+++|||||
T Consensus 93 ~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEP 172 (247)
T 2ff7_A 93 VLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEA 172 (247)
T ss_dssp CCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred ccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3321 11222 2222222 12223457899999998777666 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
|+|||+.....+.. +++.+. .|.|+|++||+++.+..+++
T Consensus 173 ts~LD~~~~~~i~~-~l~~~~-~g~tviivtH~~~~~~~~d~ 212 (247)
T 2ff7_A 173 TSALDYESEHVIMR-NMHKIC-KGRTVIIIAHRLSTVKNADR 212 (247)
T ss_dssp CSCCCHHHHHHHHH-HHHHHH-TTSEEEEECSSGGGGTTSSE
T ss_pred cccCCHHHHHHHHH-HHHHHc-CCCEEEEEeCCHHHHHhCCE
Confidence 99999988888854 445555 48999999999988765443
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.82 E-value=8.6e-20 Score=198.14 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=106.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-----------------hhhcCceeccCc-CCc---ch---
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-----------------LGICGLMVPAES-ASI---PY--- 710 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-----------------la~~g~~vp~~~-~~~---~~--- 710 (968)
+.+++++|| |++++|+||||||||||+|+|+|+.. ..+...|+|+.. ..+ ..
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence 579999999 89999999999999999999999851 112234677753 111 11
Q ss_pred -----------------HHHHHhhcCCC--CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 711 -----------------FDAIMLHMKSY--DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 711 -----------------~~~i~~~~~~~--d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
++.++..++.. +......+++|+||+|+..++++ +.+|+++||||||+|||+.....+ .
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l-~ 178 (266)
T 2yz2_A 100 VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL-L 178 (266)
T ss_dssp HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH-H
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHH-H
Confidence 23455566776 66667788999999997776665 999999999999999999888887 4
Q ss_pred HHHHHHHhcCcEEEEeccChhhhh-ccccc
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIFS-LPLKI 799 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~~-~~~~~ 799 (968)
.+++.+.+.|.|+|++||+++.+. ++++.
T Consensus 179 ~~l~~l~~~g~tii~vtHd~~~~~~~~d~v 208 (266)
T 2yz2_A 179 RIVEKWKTLGKTVILISHDIETVINHVDRV 208 (266)
T ss_dssp HHHHHHHHTTCEEEEECSCCTTTGGGCSEE
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 555556555999999999988764 35443
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.81 E-value=5.6e-20 Score=200.04 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=101.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccCcCCc--chHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASI--PYFD 712 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~~~~~--~~~~ 712 (968)
+.++++++| |++++|+||||||||||+|+|+|+.. ..+...|+|+....+ ...+
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 111 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH
Confidence 679999999 89999999999999999999999851 112234777764322 1122
Q ss_pred HH-------------------------Hhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 002090 713 AI-------------------------MLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 764 (968)
Q Consensus 713 ~i-------------------------~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~ 764 (968)
++ +..+ +.........+++|+||+|+..++++ +.+|+++||||||+|||+..
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~ 191 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 22 1222 23333445567899999997777665 89999999999999999988
Q ss_pred HHHHHHHHHHHHH-hcCcEEEEeccChhhhhccc
Q 002090 765 GTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 765 ~~~i~~~ll~~l~-~~g~~vl~~TH~~el~~~~~ 797 (968)
...+ ..++..+. +.|+|+|++||+++++..++
T Consensus 192 ~~~i-~~~l~~~~~~~g~tviivtHd~~~~~~~d 224 (271)
T 2ixe_A 192 QLRV-QRLLYESPEWASRTVLLITQQLSLAERAH 224 (271)
T ss_dssp HHHH-HHHHHHCTTTTTSEEEEECSCHHHHTTCS
T ss_pred HHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHhCC
Confidence 8877 44455554 45899999999998876544
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.81 E-value=6.2e-20 Score=197.51 Aligned_cols=142 Identities=15% Similarity=0.221 Sum_probs=100.6
Q ss_pred ccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhH--HH--------------------hhhc-CceeccC
Q 002090 652 WFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAA--SL--------------------LGIC-GLMVPAE 704 (968)
Q Consensus 652 ~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl--~~--------------------la~~-g~~vp~~ 704 (968)
.+.+ +++.+++++|| |++++|+||||||||||+|+|+|+ .. ..+. ..++|+.
T Consensus 10 ~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~ 88 (250)
T 2d2e_A 10 WASI-DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQY 88 (250)
T ss_dssp EEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCC
T ss_pred EEEE-CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccC
Confidence 3344 35689999999 899999999999999999999997 20 0111 2366765
Q ss_pred cCCcc---h------------------------HHHHHhhcCCC-CCccCCccc-hHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 705 SASIP---Y------------------------FDAIMLHMKSY-DSPADGKSS-FQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 705 ~~~~~---~------------------------~~~i~~~~~~~-d~~~~~~s~-fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
...++ . ++.++..++.. +......++ +|+||+|+..++++ +.+|+++|||
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD 168 (250)
T 2d2e_A 89 PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLD 168 (250)
T ss_dssp CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEE
T ss_pred CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 43221 0 11233445663 445566677 99999998777665 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
|||+|||+.....+ ..+++.+.+.|.|+|++||+++++..
T Consensus 169 EPts~LD~~~~~~l-~~~l~~l~~~g~tvi~vtHd~~~~~~ 208 (250)
T 2d2e_A 169 ETDSGLDIDALKVV-ARGVNAMRGPNFGALVITHYQRILNY 208 (250)
T ss_dssp CGGGTTCHHHHHHH-HHHHHHHCSTTCEEEEECSSSGGGGT
T ss_pred CCCcCCCHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 99999999888887 55556666678999999999887653
No 28
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.81 E-value=4.6e-20 Score=208.39 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=110.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcch----
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 710 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~~---- 710 (968)
+++.++++++| |++++|+||||||||||||+|+|+... .+...+|||..+.++.
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 35679999999 899999999999999999999999521 1123467775443221
Q ss_pred --------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 002090 711 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 711 --------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~ 769 (968)
++.++..+++.+...+..+++|+|++|+..++++ +.+|+++||||||+|||+..+..+.
T Consensus 102 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 181 (372)
T 1v43_A 102 ENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 181 (372)
T ss_dssp HHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 2345666787777778889999999998777666 8999999999999999999988885
Q ss_pred HHHHHHHHhcCcEEEEeccChhhh-hccccccccccc
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
..+.+..++.|.|+|++|||.+.+ .++++...+..+
T Consensus 182 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 218 (372)
T 1v43_A 182 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRG 218 (372)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 555444445599999999998876 455554333333
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.81 E-value=1.2e-19 Score=196.95 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=104.7
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH----------------------hhhc-Cceecc
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------------LGIC-GLMVPA 703 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~----------------------la~~-g~~vp~ 703 (968)
+.+.+ +++.++++++| |++++|+||||||||||+|+|+|+.. ..+. ..++|+
T Consensus 26 l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q 104 (267)
T 2zu0_C 26 LHVSV-EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQ 104 (267)
T ss_dssp EEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECS
T ss_pred EEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEcc
Confidence 33444 45789999999 89999999999999999999999720 0011 236777
Q ss_pred CcCCcc-------------------------------hHHHHHhhcCCCC-CccCCcc-chHHHHHHHHHHHHh-CCCCc
Q 002090 704 ESASIP-------------------------------YFDAIMLHMKSYD-SPADGKS-SFQVEMSEIRSIVTA-TTSRS 749 (968)
Q Consensus 704 ~~~~~~-------------------------------~~~~i~~~~~~~d-~~~~~~s-~fs~~~~~~~~il~~-a~~~~ 749 (968)
....++ .++.++..++..+ ....... ++|+||+|+..++++ +.+|+
T Consensus 105 ~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~ 184 (267)
T 2zu0_C 105 YPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPE 184 (267)
T ss_dssp SCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCS
T ss_pred CccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCC
Confidence 543211 0123445566653 3445555 599999998777665 89999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 750 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 750 LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
++||||||+|||+.....+ ..+++.+++.|+|+|++||+++++..
T Consensus 185 lLlLDEPts~LD~~~~~~l-~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 185 LCILDESDSGLDIDALKVV-ADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp EEEEESTTTTCCHHHHHHH-HHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred EEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 9999999999999888777 55556666668999999999988653
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.81 E-value=9.2e-20 Score=195.69 Aligned_cols=138 Identities=15% Similarity=0.191 Sum_probs=105.6
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------------------hhcCceeccCcCCcc-------
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP------- 709 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------------------a~~g~~vp~~~~~~~------- 709 (968)
.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 57999998 899999999999999999999998521 112346776543221
Q ss_pred ------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCc-------EEEEeCCCCCCCHHHHHHHH
Q 002090 710 ------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRS-------LVLIDEICRGTETAKGTCIA 769 (968)
Q Consensus 710 ------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~-------LlLlDEp~~GlD~~~~~~i~ 769 (968)
.++.++..++..+.......++|+||+|+..++++ +.+|+ ++||||||+|||+.....+
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l- 172 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL- 172 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH-
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH-
Confidence 12345566777776777788999999998777665 78888 9999999999999888888
Q ss_pred HHHHHHHHhcCcEEEEeccChhhh-hcccc
Q 002090 770 GSIIETLDNIGCLGIVSTHLHGIF-SLPLK 798 (968)
Q Consensus 770 ~~ll~~l~~~g~~vl~~TH~~el~-~~~~~ 798 (968)
..+++.+.+.|.++|++||+++++ .++++
T Consensus 173 ~~~l~~l~~~g~tviivtHd~~~~~~~~d~ 202 (249)
T 2qi9_C 173 DKILSALSQQGLAIVMSSHDLNHTLRHAHR 202 (249)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 455555655599999999999886 44543
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.81 E-value=1.2e-19 Score=193.70 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=107.2
Q ss_pred eeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHh------------------hhcCceeccCcCCcc----------
Q 002090 661 VHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---------- 709 (968)
Q Consensus 661 v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~l------------------a~~g~~vp~~~~~~~---------- 709 (968)
++++++| .++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 14 ~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 93 (240)
T 2onk_A 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHH
Confidence 4899988 479999999999999999999999621 112346776543221
Q ss_pred ------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 002090 710 ------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 776 (968)
Q Consensus 710 ------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l 776 (968)
.++.++..++..+......+++|+||+|+..++++ +.+|+++||||||+|||+.....+.. +++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l 172 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME-ELRFV 172 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH-HHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 12345667788777778889999999998777665 99999999999999999988888844 44555
Q ss_pred H-hcCcEEEEeccChhhh-hccccccccccc
Q 002090 777 D-NIGCLGIVSTHLHGIF-SLPLKIKNAAYK 805 (968)
Q Consensus 777 ~-~~g~~vl~~TH~~el~-~~~~~~~~~~~~ 805 (968)
. +.|.|+|++||+++.+ .++++...+..+
T Consensus 173 ~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G 203 (240)
T 2onk_A 173 QREFDVPILHVTHDLIEAAMLADEVAVMLNG 203 (240)
T ss_dssp HHHHTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 4 4589999999998865 455544333333
No 32
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.80 E-value=7e-20 Score=199.93 Aligned_cols=147 Identities=16% Similarity=0.106 Sum_probs=107.9
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------hhcCceecc
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPA 703 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------a~~g~~vp~ 703 (968)
++.+.+ +++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+
T Consensus 26 ~l~~~y-~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q 104 (279)
T 2ihy_A 26 QIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSH 104 (279)
T ss_dssp EEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECH
T ss_pred eEEEEE-CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEc
Confidence 334444 35689999999 899999999999999999999998511 011235665
Q ss_pred CcCC-c----ch-------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 704 ESAS-I----PY-------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 704 ~~~~-~----~~-------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
.... + .. +..++..++..+......+++|+||+|+..++++ +.+|+++|
T Consensus 105 ~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLl 184 (279)
T 2ihy_A 105 SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLI 184 (279)
T ss_dssp HHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred CcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 4210 0 11 1234556677666677788999999998777665 89999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE--EEeccChhhh-hcccc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDNIGCLG--IVSTHLHGIF-SLPLK 798 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~~g~~v--l~~TH~~el~-~~~~~ 798 (968)
|||||+|||+.....+. .+++.+.+.|.|+ |++||+++.+ .++++
T Consensus 185 LDEPts~LD~~~~~~l~-~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~ 232 (279)
T 2ihy_A 185 LDEPAAGLDFIARESLL-SILDSLSDSYPTLAMIYVTHFIEEITANFSK 232 (279)
T ss_dssp EESTTTTCCHHHHHHHH-HHHHHHHHHCTTCEEEEEESCGGGCCTTCCE
T ss_pred EeCCccccCHHHHHHHH-HHHHHHHHCCCEEEEEEEecCHHHHHHhCCE
Confidence 99999999998888884 4555555558999 9999998875 34443
No 33
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.80 E-value=4.9e-20 Score=197.50 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=102.6
Q ss_pred cccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh--------------------hhcCceeccCcCCc
Q 002090 653 FDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASI 708 (968)
Q Consensus 653 ~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l--------------------a~~g~~vp~~~~~~ 708 (968)
+.+.+++.+++++|| |++++|+||||||||||+|+|+|+... .+...++|+....+
T Consensus 9 ~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~ 88 (243)
T 1mv5_A 9 FAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIM 88 (243)
T ss_dssp ECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCC
T ss_pred EEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccc
Confidence 344345679999999 899999999999999999999998511 11234677754322
Q ss_pred c--h----------------HHHHHhhcCCCCCcc-----------CCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 709 P--Y----------------FDAIMLHMKSYDSPA-----------DGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 709 ~--~----------------~~~i~~~~~~~d~~~-----------~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
+ . +..++..++..+.+. ...+++|+||+|+..++++ +.+|+++||||||+
T Consensus 89 ~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts 168 (243)
T 1mv5_A 89 AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATA 168 (243)
T ss_dssp CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSC
T ss_pred cccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 1 1 112233334433322 2346899999997776665 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
|||+.....+.. ++..+. .|+|+|++||+++.+..++
T Consensus 169 ~LD~~~~~~i~~-~l~~~~-~~~tvi~vtH~~~~~~~~d 205 (243)
T 1mv5_A 169 SLDSESESMVQK-ALDSLM-KGRTTLVIAHRLSTIVDAD 205 (243)
T ss_dssp SSCSSSCCHHHH-HHHHHH-TTSEEEEECCSHHHHHHCS
T ss_pred cCCHHHHHHHHH-HHHHhc-CCCEEEEEeCChHHHHhCC
Confidence 999988888844 445555 5899999999998765443
No 34
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.80 E-value=8.6e-20 Score=206.55 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=113.6
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh------------h------------hcCceeccCcCCc
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------G------------ICGLMVPAESASI 708 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l------------a------------~~g~~vp~~~~~~ 708 (968)
+++.++++++| |++++|+||||||||||||+|+|+... . +...+|||....+
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccC
Confidence 45679999999 899999999999999999999999521 0 1124677765443
Q ss_pred ch------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 ~~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
+. ++.++..+++.+......+++|+|++|...++++ +.+|+++||||||+|||+.
T Consensus 94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 173 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 21 1234556677777778889999999998777665 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hcccccccccccee
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 807 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~~~~~~~~~ 807 (968)
....+...+.+..++.|.|+|++|||.+.+ .++++...+..+.+
T Consensus 174 ~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 218 (372)
T 1g29_1 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218 (372)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEE
Confidence 888885555444445699999999998876 45555444444433
No 35
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.80 E-value=9.7e-20 Score=204.86 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=108.9
Q ss_pred Cce--eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-----------------------hhcCceeccCcCCc
Q 002090 658 GSA--VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASI 708 (968)
Q Consensus 658 ~~~--v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-----------------------a~~g~~vp~~~~~~ 708 (968)
+.. ++++++| |++++|+||||||||||||+|+|+... .+...+|||....+
T Consensus 15 ~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~ 94 (353)
T 1oxx_K 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94 (353)
T ss_dssp GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccC
Confidence 345 9999999 899999999999999999999998511 01123677765433
Q ss_pred ch------------------------HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 002090 709 PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETA 763 (968)
Q Consensus 709 ~~------------------------~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~ 763 (968)
+. ++.++..+++.+......+++|+|++|+..++++ +.+|+++||||||+|||+.
T Consensus 95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 174 (353)
T 1oxx_K 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174 (353)
T ss_dssp TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 21 2345566777777778889999999998777666 8999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeccChhhh-hccccc
Q 002090 764 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 799 (968)
Q Consensus 764 ~~~~i~~~ll~~l~~~g~~vl~~TH~~el~-~~~~~~ 799 (968)
.+..+...+.+..++.|.|+|++|||.+.+ .++++.
T Consensus 175 ~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri 211 (353)
T 1oxx_K 175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211 (353)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 888885555444445699999999998876 345544
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.79 E-value=7.3e-20 Score=194.32 Aligned_cols=147 Identities=17% Similarity=0.084 Sum_probs=101.7
Q ss_pred cccccC-CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhh-------cCceeccCcCCcc--hHHH---
Q 002090 651 YWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASIP--YFDA--- 713 (968)
Q Consensus 651 ~~~~~~-~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~-------~g~~vp~~~~~~~--~~~~--- 713 (968)
+.+.+. +++.++++++| |++++|+||||||||||+|+|+|+..... ...|+|+....++ ..++
T Consensus 12 l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~ 91 (229)
T 2pze_A 12 VTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIF 91 (229)
T ss_dssp EEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHT
T ss_pred EEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhc
Confidence 334444 35689999999 89999999999999999999999863211 1236777643321 1111
Q ss_pred -----------HHhhcCCCCC-----------ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 714 -----------IMLHMKSYDS-----------PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 714 -----------i~~~~~~~d~-----------~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
+....+..+. +.....++|+||+|+..++++ +.+|+++||||||+|||+.....+..
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~ 171 (229)
T 2pze_A 92 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 171 (229)
T ss_dssp TSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred cCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHH
Confidence 1112222111 122347899999998777665 89999999999999999988777754
Q ss_pred HHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 771 SIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 771 ~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
.+++.+. .|.|+|++||+++.+..+++
T Consensus 172 ~l~~~~~-~~~tvi~vtH~~~~~~~~d~ 198 (229)
T 2pze_A 172 SCVCKLM-ANKTRILVTSKMEHLKKADK 198 (229)
T ss_dssp HCCCCCT-TTSEEEEECCCHHHHHHCSE
T ss_pred HHHHHhh-CCCEEEEEcCChHHHHhCCE
Confidence 4443333 37899999999988654443
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.79 E-value=4e-19 Score=192.20 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=98.4
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-------------------hhhcCceeccCcCCcc--hHHH
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAESASIP--YFDA 713 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-------------------la~~g~~vp~~~~~~~--~~~~ 713 (968)
+.++++++| |++++|+||||||||||+|+|+|+.. ..+...|+|+....++ ..++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 112 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYN 112 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHH
Confidence 469999999 89999999999999999999999851 0112346777643321 1222
Q ss_pred H---------------HhhcCCCCC-----------ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 002090 714 I---------------MLHMKSYDS-----------PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 714 i---------------~~~~~~~d~-----------~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
+ +..++..+. +....+++|+||+|+..++++ +.+|+++||||||+|||+....
T Consensus 113 l~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~ 192 (260)
T 2ghi_A 113 ILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192 (260)
T ss_dssp HHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHH
T ss_pred HhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 2 112222111 123457899999997777665 8999999999999999998877
Q ss_pred HHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 767 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 767 ~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.+ ..+++.+.+ +.|+|++||+++++..++
T Consensus 193 ~i-~~~l~~l~~-~~tviivtH~~~~~~~~d 221 (260)
T 2ghi_A 193 LF-QKAVEDLRK-NRTLIIIAHRLSTISSAE 221 (260)
T ss_dssp HH-HHHHHHHTT-TSEEEEECSSGGGSTTCS
T ss_pred HH-HHHHHHhcC-CCEEEEEcCCHHHHHhCC
Confidence 77 555555654 899999999998765444
No 38
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.78 E-value=1.6e-19 Score=199.00 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=107.8
Q ss_pred CccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccC
Q 002090 649 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 704 (968)
Q Consensus 649 ~~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~ 704 (968)
.++.+.|.+++.++++++| |++++|+||||||||||+|+|+|+.. +.+...+|||+
T Consensus 57 ~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~ 136 (306)
T 3nh6_A 57 ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136 (306)
T ss_dssp EEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSS
T ss_pred EEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecC
Confidence 3455666667789999999 89999999999999999999999851 12234578887
Q ss_pred cCCcc--hHHHHH---------------hhcC-----------CCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIP--YFDAIM---------------LHMK-----------SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~--~~~~i~---------------~~~~-----------~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...++ ..+++. ...+ ....+......+|+|++|+..++++ +.+|+++||||
T Consensus 137 ~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDE 216 (306)
T 3nh6_A 137 TVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDE 216 (306)
T ss_dssp CCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred CccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 54431 122221 1111 1222334446899999998777666 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
||+|||+.....+... +..+.+ +.|+|++||+++.+..+++.
T Consensus 217 Pts~LD~~~~~~i~~~-l~~l~~-~~Tvi~itH~l~~~~~aD~i 258 (306)
T 3nh6_A 217 ATSALDTSNERAIQAS-LAKVCA-NRTTIVVAHRLSTVVNADQI 258 (306)
T ss_dssp CSSCCCHHHHHHHHHH-HHHHHT-TSEEEEECCSHHHHHTCSEE
T ss_pred CcccCCHHHHHHHHHH-HHHHcC-CCEEEEEEcChHHHHcCCEE
Confidence 9999999888888544 444544 68999999999987765543
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=190.04 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=98.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcCCc--chHHHH----------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASI--PYFDAI---------- 714 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~~~--~~~~~i---------- 714 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... ....|+|+..... ...+++
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~ 96 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPY 96 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHH
Confidence 4679999999 8999999999999999999999986321 1123677764321 111221
Q ss_pred ----HhhcCCC-----------CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH--HHH
Q 002090 715 ----MLHMKSY-----------DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSII--ETL 776 (968)
Q Consensus 715 ----~~~~~~~-----------d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll--~~l 776 (968)
...++.. ..+....+++|+||+|+..++++ +.+|+++||||||+|||+.....+...+. ..+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~ 176 (237)
T 2cbz_A 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176 (237)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST
T ss_pred HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh
Confidence 1111111 01344567899999997776665 89999999999999999988777755443 223
Q ss_pred HhcCcEEEEeccChhhhhccc
Q 002090 777 DNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 777 ~~~g~~vl~~TH~~el~~~~~ 797 (968)
. .|.|+|++||+.+.+..++
T Consensus 177 ~-~~~tviivtH~~~~~~~~d 196 (237)
T 2cbz_A 177 L-KNKTRILVTHSMSYLPQVD 196 (237)
T ss_dssp T-TTSEEEEECSCSTTGGGSS
T ss_pred c-CCCEEEEEecChHHHHhCC
Confidence 3 4899999999988765444
No 40
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.78 E-value=5.5e-19 Score=191.08 Aligned_cols=134 Identities=19% Similarity=0.222 Sum_probs=101.9
Q ss_pred ceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhhh-----------------cCc-eeccCcCC-cc-------
Q 002090 659 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGI-----------------CGL-MVPAESAS-IP------- 709 (968)
Q Consensus 659 ~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la~-----------------~g~-~vp~~~~~-~~------- 709 (968)
+.++++++| |++++|+||||||||||+|+|+|+. ... ... |+|+.... ..
T Consensus 18 ~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~ 96 (263)
T 2pjz_A 18 RFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYL 96 (263)
T ss_dssp EEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHH
T ss_pred ceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHH
Confidence 578999888 8999999999999999999999986 320 122 67765432 11
Q ss_pred ----------hHHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 002090 710 ----------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777 (968)
Q Consensus 710 ----------~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~ 777 (968)
.++.++..++.. +......+++|+||+|+..++++ +.+|+++||||||+|||+.....+. .+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~-~~L~~~~ 175 (263)
T 2pjz_A 97 YEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS-RYIKEYG 175 (263)
T ss_dssp HHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH-HHHHHSC
T ss_pred hhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHH-HHHHHhc
Confidence 123455667877 76778889999999997776655 8999999999999999998877774 4444443
Q ss_pred hcCcEEEEeccChhhh-hccc
Q 002090 778 NIGCLGIVSTHLHGIF-SLPL 797 (968)
Q Consensus 778 ~~g~~vl~~TH~~el~-~~~~ 797 (968)
+ |+|++||+++.+ .+++
T Consensus 176 ~---tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 176 K---EGILVTHELDMLNLYKE 193 (263)
T ss_dssp S---EEEEEESCGGGGGGCTT
T ss_pred C---cEEEEEcCHHHHHHhcC
Confidence 3 999999998875 3444
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=198.66 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=107.3
Q ss_pred cccccC-CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH-------------------hhhcCceeccCcC
Q 002090 651 YWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAESA 706 (968)
Q Consensus 651 ~~~~~~-~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~-------------------la~~g~~vp~~~~ 706 (968)
+.+.|. +++.+++++|| |++++|+||||||||||||+|+|+.. ..+...+|||...
T Consensus 25 l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~ 104 (390)
T 3gd7_A 25 LTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVF 104 (390)
T ss_dssp EEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCC
T ss_pred EEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcc
Confidence 334444 45789999999 89999999999999999999999851 1123347887765
Q ss_pred Ccc--hH--------------HHHHhhcCCCCCccCCccc-----------hHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002090 707 SIP--YF--------------DAIMLHMKSYDSPADGKSS-----------FQVEMSEIRSIVTA-TTSRSLVLIDEICR 758 (968)
Q Consensus 707 ~~~--~~--------------~~i~~~~~~~d~~~~~~s~-----------fs~~~~~~~~il~~-a~~~~LlLlDEp~~ 758 (968)
.++ .. ..++..+++.+........ +|+||+|+..++++ +.+|+++||||||+
T Consensus 105 lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts 184 (390)
T 3gd7_A 105 IFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA 184 (390)
T ss_dssp CCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHH
T ss_pred cCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 432 11 2334444554444444444 99999998777666 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccc
Q 002090 759 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801 (968)
Q Consensus 759 GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~ 801 (968)
|||+.....+.. +++.+. .++|+|++||+.+....+++...
T Consensus 185 ~LD~~~~~~l~~-~l~~~~-~~~tvi~vtHd~e~~~~aDri~v 225 (390)
T 3gd7_A 185 HLDPVTYQIIRR-TLKQAF-ADCTVILCEARIEAMLECDQFLV 225 (390)
T ss_dssp HSCHHHHHHHHH-HHHTTT-TTSCEEEECSSSGGGTTCSEEEE
T ss_pred CCCHHHHHHHHH-HHHHHh-CCCEEEEEEcCHHHHHhCCEEEE
Confidence 999988777744 444443 47999999999887666554433
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.75 E-value=8.5e-19 Score=192.18 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=97.4
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcCCc--chHHHHH---------
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASI--PYFDAIM--------- 715 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~~~--~~~~~i~--------- 715 (968)
++.++++++| |++++|+||||||||||+|+|+|+.... ....|+|+....+ ...+++.
T Consensus 50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 129 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRY 129 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHH
Confidence 3578999999 8999999999999999999999986321 1123677765332 2222222
Q ss_pred ----hhcCCCCC-----------ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 002090 716 ----LHMKSYDS-----------PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 779 (968)
Q Consensus 716 ----~~~~~~d~-----------~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~ 779 (968)
...+..+. +.....++|+||+|+..++++ +.+|+++||||||+|||+.....+...+++.+. .
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~ 208 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A 208 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-T
T ss_pred HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-C
Confidence 11222111 111236899999998777665 899999999999999999887777544443343 4
Q ss_pred CcEEEEeccChhhhhccc
Q 002090 780 GCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 780 g~~vl~~TH~~el~~~~~ 797 (968)
|.|+|++||+++.+..++
T Consensus 209 ~~tviivtHd~~~~~~~d 226 (290)
T 2bbs_A 209 NKTRILVTSKMEHLKKAD 226 (290)
T ss_dssp TSEEEEECCCHHHHHHSS
T ss_pred CCEEEEEecCHHHHHcCC
Confidence 899999999998875544
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.71 E-value=2.4e-17 Score=196.00 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=106.2
Q ss_pred cccccCCCceeeeeEe-e--ceEEEEEecCCCCcchHHHHHHhHHHhh--h------------cC---------------
Q 002090 651 YWFDAAEGSAVHNTVD-M--QSLFLLTGPNGGGKSSLLRSICAASLLG--I------------CG--------------- 698 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~-l--g~~~~I~GpNGsGKSTllk~i~gl~~la--~------------~g--------------- 698 (968)
+.+.+.+...++++++ + |++++|+||||||||||||+|+|+.... . .|
T Consensus 27 ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 106 (538)
T 1yqt_A 27 CVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106 (538)
T ss_dssp EEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSC
T ss_pred cEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhh
Confidence 3344433335888885 5 8999999999999999999999975211 0 01
Q ss_pred --ceeccCcCC------------------cchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002090 699 --LMVPAESAS------------------IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEIC 757 (968)
Q Consensus 699 --~~vp~~~~~------------------~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~ 757 (968)
.++++.... ...+..++..++..+......+++|+|++|+..|+++ +.+|+++||||||
T Consensus 107 ~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPT 186 (538)
T 1yqt_A 107 RPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPS 186 (538)
T ss_dssp CCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred hhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 122221110 0123456777888877888899999999998877766 8999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 758 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 758 ~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
+|||+.....+ ..+++.+.+.|.|+|++||+++++.
T Consensus 187 s~LD~~~~~~l-~~~L~~l~~~g~tvi~vsHd~~~~~ 222 (538)
T 1yqt_A 187 SYLDIRQRLNA-ARAIRRLSEEGKSVLVVEHDLAVLD 222 (538)
T ss_dssp TTCCHHHHHHH-HHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred ccCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99999888777 5556666667999999999998764
No 44
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.5e-17 Score=197.47 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=105.0
Q ss_pred cccCCCceeeeeEee----c-----eEEEEEecCCCCcchHHHHHHhHHHhhh-------cCceeccCcCCc---c----
Q 002090 653 FDAAEGSAVHNTVDM----Q-----SLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASI---P---- 709 (968)
Q Consensus 653 ~~~~~~~~v~~~i~l----g-----~~~~I~GpNGsGKSTllk~i~gl~~la~-------~g~~vp~~~~~~---~---- 709 (968)
+.+.+...++++++| | ++++|+||||||||||+|+|+|+..... ...++|+..... .
T Consensus 354 ~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~ 433 (608)
T 3j16_B 354 FSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL 433 (608)
T ss_dssp CEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHH
T ss_pred EEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHH
Confidence 334443456777777 4 7899999999999999999999864321 123566542210 1
Q ss_pred -------------hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002090 710 -------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIET 775 (968)
Q Consensus 710 -------------~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~ 775 (968)
..+.++..+++.+......+++|+|++|...+++. +.+|+++||||||+|||+.....+...+.+.
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l 513 (608)
T 3j16_B 434 FFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513 (608)
T ss_dssp HHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 11234455677777778889999999998877766 8999999999999999998888885554444
Q ss_pred HHhcCcEEEEeccChhhhh
Q 002090 776 LDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 776 l~~~g~~vl~~TH~~el~~ 794 (968)
..+.|.|+|++|||++++.
T Consensus 514 ~~~~g~tviivtHdl~~~~ 532 (608)
T 3j16_B 514 ILHNKKTAFIVEHDFIMAT 532 (608)
T ss_dssp HHHHTCEEEEECSCHHHHH
T ss_pred HHhCCCEEEEEeCCHHHHH
Confidence 4567999999999998875
No 45
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.69 E-value=3.1e-16 Score=188.75 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=105.7
Q ss_pred ccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccC
Q 002090 650 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 704 (968)
Q Consensus 650 ~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~ 704 (968)
++.+.+.++ +.+++|++| |++++|+||||||||||+|+++|+.. +.+...+|||+
T Consensus 346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b60_A 346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425 (582)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSS
T ss_pred EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccC
Confidence 445556533 689999999 89999999999999999999999851 11223478886
Q ss_pred cCCcc--hHHHH----------------HhhcCCC-----------CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002090 705 SASIP--YFDAI----------------MLHMKSY-----------DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLID 754 (968)
Q Consensus 705 ~~~~~--~~~~i----------------~~~~~~~-----------d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlD 754 (968)
...++ ..+++ ....+.. ..+.....++|+|++|+..++++ +.+|+++|||
T Consensus 426 ~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD 505 (582)
T 3b60_A 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_dssp CCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 54321 12222 2222221 12233457899999998777666 8999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 755 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 755 Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
|||+|+|+.....+. ..++.+.+ |+|+|++||+++....+++.
T Consensus 506 Epts~LD~~~~~~i~-~~l~~~~~-~~tvi~itH~~~~~~~~d~i 548 (582)
T 3b60_A 506 EATSALDTESERAIQ-AALDELQK-NRTSLVIAHRLSTIEQADEI 548 (582)
T ss_dssp TTTSSCCHHHHHHHH-HHHHHHHT-TSEEEEECSCGGGTTTCSEE
T ss_pred CccccCCHHHHHHHH-HHHHHHhC-CCEEEEEeccHHHHHhCCEE
Confidence 999999998888874 44455554 89999999999877655443
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.69 E-value=5.7e-17 Score=194.74 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=106.7
Q ss_pred ccccccCCCceeeeeEe-e--ceEEEEEecCCCCcchHHHHHHhHHHhh--h------------cC--------------
Q 002090 650 PYWFDAAEGSAVHNTVD-M--QSLFLLTGPNGGGKSSLLRSICAASLLG--I------------CG-------------- 698 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~-l--g~~~~I~GpNGsGKSTllk~i~gl~~la--~------------~g-------------- 698 (968)
++.+.+.+..+++++++ + |++++|+||||||||||||+|+|+.... . .|
T Consensus 96 ~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 175 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 175 (607)
T ss_dssp SEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTS
T ss_pred CeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhh
Confidence 34444533335888886 4 8999999999999999999999975211 0 01
Q ss_pred ---ceeccCcCC------------------cchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 699 ---LMVPAESAS------------------IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 699 ---~~vp~~~~~------------------~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
.++++.... ...++.++..+++.+......+++|+|++|+..|+++ +.+|+++|||||
T Consensus 176 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEP 255 (607)
T 3bk7_A 176 IRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEP 255 (607)
T ss_dssp CCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECT
T ss_pred cceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 122221100 0123567777888877888889999999998877766 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
|+|||+.....+ ..+++.+.+.|.|+|++|||++++.
T Consensus 256 Ts~LD~~~~~~l-~~~L~~l~~~g~tvIivsHdl~~~~ 292 (607)
T 3bk7_A 256 SSYLDIRQRLKV-ARVIRRLANEGKAVLVVEHDLAVLD 292 (607)
T ss_dssp TTTCCHHHHHHH-HHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred cccCCHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHH
Confidence 999999888887 5555666667999999999998764
No 47
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.69 E-value=6.4e-17 Score=195.24 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=108.3
Q ss_pred ccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 650 PYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 650 ~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
++.+.+.+ ++.+++|++| |++++|+||||||||||+|+|+|+.. +.+...+|||
T Consensus 346 ~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q 425 (595)
T 2yl4_A 346 NVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425 (595)
T ss_dssp EEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECS
T ss_pred EEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEcc
Confidence 34455543 3579999999 89999999999999999999999851 1122347787
Q ss_pred CcCCcc--hHHHH------------------HhhcCCCC-----------CccCCccchHHHHHHHHHHHHh-CCCCcEE
Q 002090 704 ESASIP--YFDAI------------------MLHMKSYD-----------SPADGKSSFQVEMSEIRSIVTA-TTSRSLV 751 (968)
Q Consensus 704 ~~~~~~--~~~~i------------------~~~~~~~d-----------~~~~~~s~fs~~~~~~~~il~~-a~~~~Ll 751 (968)
+...++ ..+++ ....+..+ .+.....++|+|++|+..++++ +.+|+++
T Consensus 426 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~il 505 (595)
T 2yl4_A 426 EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 505 (595)
T ss_dssp SCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 653321 11222 22222211 1223347899999998777666 8999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccccccee
Q 002090 752 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807 (968)
Q Consensus 752 LlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~ 807 (968)
||||||+|+|+.....+ ...++.+.+ |+|+|++||+++..+.+++.-.+.++.+
T Consensus 506 llDEpts~LD~~~~~~i-~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i 559 (595)
T 2yl4_A 506 LLDEATSALDAENEYLV-QEALDRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKI 559 (595)
T ss_dssp EEECCCSSCCHHHHHHH-HHHHHHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEE
T ss_pred EEECcccCCCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999877777 455555555 7999999999988766555444444443
No 48
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.69 E-value=3.4e-17 Score=197.13 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=105.6
Q ss_pred CccccccCCC-ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 649 SPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 649 ~~~~~~~~~~-~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
.++.+.+.++ +.+++|++| |++++|+||||||||||+|+++|+.. +.+...+|||
T Consensus 345 ~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b5x_A 345 KDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ 424 (582)
T ss_pred EEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcC
Confidence 3445556543 679999999 89999999999999999999999851 1122347787
Q ss_pred CcCCcc--hHHH----------------HHhhcCCCC-----------CccCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 704 ESASIP--YFDA----------------IMLHMKSYD-----------SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 704 ~~~~~~--~~~~----------------i~~~~~~~d-----------~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
+...++ ..++ .....+..+ .+.....++|+|++|+..++++ +.+|+++||
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illl 504 (582)
T 3b5x_A 425 NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLIL 504 (582)
T ss_pred CCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 653321 1111 122222221 1223446899999998777666 899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
||||+|+|+.....+.. .++.+.+ |+|+|++||+++....+++.
T Consensus 505 DEpts~LD~~~~~~i~~-~l~~~~~-~~tvi~itH~~~~~~~~d~i 548 (582)
T 3b5x_A 505 DEATSALDTESERAIQA-ALDELQK-NKTVLVIAHRLSTIEQADEI 548 (582)
T ss_pred ECccccCCHHHHHHHHH-HHHHHcC-CCEEEEEecCHHHHHhCCEE
Confidence 99999999988888744 4444544 89999999999887665543
No 49
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.69 E-value=2.5e-17 Score=198.74 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=105.7
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccCc
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAES 705 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~~ 705 (968)
++.+.+.+++.+++|++| |++++|+||||||||||+|+++|+.. +.+...+|||+.
T Consensus 359 ~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 359 NVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp EEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred EEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence 445556666789999999 89999999999999999999999851 122344788876
Q ss_pred CCcc--hHHHHHh---------------hcCCCCCc-----------cCCccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002090 706 ASIP--YFDAIML---------------HMKSYDSP-----------ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEI 756 (968)
Q Consensus 706 ~~~~--~~~~i~~---------------~~~~~d~~-----------~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp 756 (968)
..++ ..+++.. ..+..+.+ ......+|+|++|+..++++ +.+|+++|||||
T Consensus 439 ~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEp 518 (598)
T 3qf4_B 439 ILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA 518 (598)
T ss_dssp CCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred ccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4332 2233221 11111111 11125789999998777766 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 757 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 757 ~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
|+|+|+.....+...+ +.+. .|+|+|++||+++.+..+++.
T Consensus 519 ts~LD~~~~~~i~~~l-~~~~-~~~t~i~itH~l~~~~~~d~i 559 (598)
T 3qf4_B 519 TSNVDTKTEKSIQAAM-WKLM-EGKTSIIIAHRLNTIKNADLI 559 (598)
T ss_dssp CTTCCHHHHHHHHHHH-HHHH-TTSEEEEESCCTTHHHHCSEE
T ss_pred ccCCCHHHHHHHHHHH-HHHc-CCCEEEEEecCHHHHHcCCEE
Confidence 9999998888885444 4454 489999999999887655543
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.68 E-value=6.6e-17 Score=191.71 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=97.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh--------hcCceeccCcCC---cch------------------HHHHHhhc
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG--------ICGLMVPAESAS---IPY------------------FDAIMLHM 718 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la--------~~g~~vp~~~~~---~~~------------------~~~i~~~~ 718 (968)
|++++|+||||||||||+|+|+|+.... +...++|+.... ... .+.++..+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~ 373 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL 373 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc
Confidence 8999999999999999999999986321 122355654221 111 12344455
Q ss_pred CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-cc
Q 002090 719 KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LP 796 (968)
Q Consensus 719 ~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-~~ 796 (968)
++.+......+++|+|++|...|++. +.+|+++||||||+|||+.....+...+.+...+.|.|+|++|||++++. ++
T Consensus 374 ~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a 453 (538)
T 3ozx_A 374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA 453 (538)
T ss_dssp TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 66666677888999999998777666 89999999999999999988888855544444457999999999998875 34
Q ss_pred c
Q 002090 797 L 797 (968)
Q Consensus 797 ~ 797 (968)
+
T Consensus 454 D 454 (538)
T 3ozx_A 454 D 454 (538)
T ss_dssp S
T ss_pred C
Confidence 4
No 51
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=5.1e-16 Score=186.81 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=108.3
Q ss_pred ccccccC-CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccC
Q 002090 650 PYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 704 (968)
Q Consensus 650 ~~~~~~~-~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~ 704 (968)
++.+.+. +++.+++|+|| |++++|+||||||||||+|+++|+.. +.+...+|||+
T Consensus 346 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 425 (587)
T 3qf4_A 346 NVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425 (587)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSS
T ss_pred EEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCC
Confidence 4445554 35689999999 89999999999999999999999851 12234578887
Q ss_pred cCCcc--hHHHHH---------------hhc-----------CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIP--YFDAIM---------------LHM-----------KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~--~~~~i~---------------~~~-----------~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...++ ..+++. ... |....+......+|+|++|+..++++ +.+|+++||||
T Consensus 426 ~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE 505 (587)
T 3qf4_A 426 TVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD 505 (587)
T ss_dssp CCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred CcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 54331 112211 111 22223345567899999998777766 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~ 801 (968)
||+++|+.....+...+ +.+. +|+|+|++||+++.+..+++.-.
T Consensus 506 pts~LD~~~~~~i~~~l-~~~~-~~~tvi~itH~l~~~~~~d~i~v 549 (587)
T 3qf4_A 506 CTSSVDPITEKRILDGL-KRYT-KGCTTFIITQKIPTALLADKILV 549 (587)
T ss_dssp CCTTSCHHHHHHHHHHH-HHHS-TTCEEEEEESCHHHHTTSSEEEE
T ss_pred CcccCCHHHHHHHHHHH-HHhC-CCCEEEEEecChHHHHhCCEEEE
Confidence 99999998888885554 4443 58999999999998776554433
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.3e-17 Score=193.01 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=107.5
Q ss_pred ccccccCCCceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhhh--c--------------Cc-----------
Q 002090 650 PYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGI--C--------------GL----------- 699 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la~--~--------------g~----------- 699 (968)
++.+.|....+.+++++. |++++|+||||||||||||+|+|+..... + |.
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHH
Confidence 344555555667776655 89999999999999999999999852110 0 00
Q ss_pred ------eeccCcCC-----------------------cchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCc
Q 002090 700 ------MVPAESAS-----------------------IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRS 749 (968)
Q Consensus 700 ------~vp~~~~~-----------------------~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~ 749 (968)
+.|+.... ...++.++..+++.+......+++|+|++|+..|+++ +.+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~ 241 (608)
T 3j16_B 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD 241 (608)
T ss_dssp TSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCS
T ss_pred HhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCC
Confidence 01110000 0123456777888888888899999999998877766 89999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 750 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 750 LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
++||||||+|||+.....+ ..+++.+++.|.++|++||+++++.
T Consensus 242 llllDEPts~LD~~~~~~l-~~~l~~l~~~g~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 242 VYMFDEPSSYLDVKQRLNA-AQIIRSLLAPTKYVICVEHDLSVLD 285 (608)
T ss_dssp EEEEECTTTTCCHHHHHHH-HHHHHGGGTTTCEEEEECSCHHHHH
T ss_pred EEEEECcccCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9999999999999888777 6666667777999999999998765
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.68 E-value=5.2e-17 Score=195.32 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=107.5
Q ss_pred ccccccCC-CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceeccC
Q 002090 650 PYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 704 (968)
Q Consensus 650 ~~~~~~~~-~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~~ 704 (968)
++.+.+.+ ++.+++|+|| |++++|+||||||||||+|+++|+.. +.+...+|||+
T Consensus 344 ~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 423 (578)
T 4a82_A 344 HVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD 423 (578)
T ss_dssp EEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSS
T ss_pred EEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCC
Confidence 44455554 4679999999 89999999999999999999999851 12234578887
Q ss_pred cCCcc--hHHHHH---------------hhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002090 705 SASIP--YFDAIM---------------LHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDE 755 (968)
Q Consensus 705 ~~~~~--~~~~i~---------------~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDE 755 (968)
...++ ..+++. ...+. ...+.....++|+|++|+..++++ +.+|+++||||
T Consensus 424 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDE 503 (578)
T 4a82_A 424 NILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 503 (578)
T ss_dssp CCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 54332 222221 11111 122233346899999998777766 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccc
Q 002090 756 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 805 (968)
Q Consensus 756 p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~ 805 (968)
||+|+|+.....+ ...++.+. +++|+|++||+++.+..+++.-.+.++
T Consensus 504 pts~LD~~~~~~i-~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G 551 (578)
T 4a82_A 504 ATSALDLESESII-QEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENG 551 (578)
T ss_dssp TTTTCCHHHHHHH-HHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETT
T ss_pred ccccCCHHHHHHH-HHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 9999999876666 45555554 478999999999987665544333333
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.67 E-value=1.2e-16 Score=191.85 Aligned_cols=135 Identities=11% Similarity=0.089 Sum_probs=102.2
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh-------hhcCceeccCcCCc---ch---------------
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GICGLMVPAESASI---PY--------------- 710 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l-------a~~g~~vp~~~~~~---~~--------------- 710 (968)
..++.++| |++++|+||||||||||+|+|+|+... .....|+|+..... ..
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~ 449 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN 449 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCH
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHH
Confidence 45666554 899999999999999999999998632 12234677754221 00
Q ss_pred --HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEec
Q 002090 711 --FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVST 787 (968)
Q Consensus 711 --~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~T 787 (968)
++.++..+++.+......+++|+|++|...+++. +.+|+++||||||+|||+.....+...+.+...+.|.|+|++|
T Consensus 450 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs 529 (607)
T 3bk7_A 450 FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529 (607)
T ss_dssp HHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 1234556677777778889999999998777665 8999999999999999998888885544443345799999999
Q ss_pred cChhhhh
Q 002090 788 HLHGIFS 794 (968)
Q Consensus 788 H~~el~~ 794 (968)
||++++.
T Consensus 530 Hd~~~~~ 536 (607)
T 3bk7_A 530 HDVLMID 536 (607)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 9998865
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.67 E-value=1.3e-16 Score=189.55 Aligned_cols=135 Identities=11% Similarity=0.080 Sum_probs=100.6
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcCCc---ch---------------
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASI---PY--------------- 710 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~~~---~~--------------- 710 (968)
..++.++| |++++|+||||||||||+|+|+|+.... ....|+|+..... ..
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~ 379 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSN 379 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH
Confidence 45666554 8999999999999999999999986321 1234677764221 11
Q ss_pred --HHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEec
Q 002090 711 --FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVST 787 (968)
Q Consensus 711 --~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~T 787 (968)
++.++..++..+.......++|+|++|...+++. +.+|+++||||||+|||+.....+...+.+...+.|.++|++|
T Consensus 380 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 380 FYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459 (538)
T ss_dssp HHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 1223344566666667788999999998777665 8999999999999999998888885544443345699999999
Q ss_pred cChhhhh
Q 002090 788 HLHGIFS 794 (968)
Q Consensus 788 H~~el~~ 794 (968)
||.+++.
T Consensus 460 Hd~~~~~ 466 (538)
T 1yqt_A 460 HDVLMID 466 (538)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 9998865
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.65 E-value=4e-16 Score=185.05 Aligned_cols=135 Identities=10% Similarity=0.031 Sum_probs=100.3
Q ss_pred CceeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHHhhh----------------cCc-----------------ee
Q 002090 658 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGI----------------CGL-----------------MV 701 (968)
Q Consensus 658 ~~~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~la~----------------~g~-----------------~v 701 (968)
+.+.+-++.. |++++|+||||||||||||+|+|+..... .|. ..
T Consensus 12 ~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 91 (538)
T 3ozx_A 12 NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK 91 (538)
T ss_dssp TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence 3455555555 89999999999999999999999752110 000 00
Q ss_pred ccCcCC------------------cchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 002090 702 PAESAS------------------IPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 762 (968)
Q Consensus 702 p~~~~~------------------~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~ 762 (968)
++.... ....+.++..++..+......+++|+|++|+..|+++ +.+|+++||||||+|||+
T Consensus 92 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~ 171 (538)
T 3ozx_A 92 IQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV 171 (538)
T ss_dssp CSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred cchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 110000 0123456777888777788889999999998887766 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 763 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 763 ~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
.....+ ..+++.+++ |.|+|++||+++++.
T Consensus 172 ~~~~~l-~~~l~~l~~-g~tii~vsHdl~~~~ 201 (538)
T 3ozx_A 172 RERMNM-AKAIRELLK-NKYVIVVDHDLIVLD 201 (538)
T ss_dssp HHHHHH-HHHHHHHCT-TSEEEEECSCHHHHH
T ss_pred HHHHHH-HHHHHHHhC-CCEEEEEEeChHHHH
Confidence 888887 566666765 899999999998764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.64 E-value=3.5e-16 Score=191.48 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=65.0
Q ss_pred hcCCCCC-ccCCccchHHHHHHHHHHHHh-CCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 717 HMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSRS--LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 717 ~~~~~d~-~~~~~s~fs~~~~~~~~il~~-a~~~~--LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
.+++.+. .....+++|+|++|+..|+++ +.+|+ ++||||||+|||+.....+ ..+++.+++.|.|+|++|||+++
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l-~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL-IATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHHTTCEEEEECCCHHH
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHH
Confidence 3444432 456678999999998887766 67777 9999999999999888888 56666677789999999999998
Q ss_pred hhccccc
Q 002090 793 FSLPLKI 799 (968)
Q Consensus 793 ~~~~~~~ 799 (968)
+..+++.
T Consensus 267 ~~~~d~i 273 (670)
T 3ux8_A 267 MLAADYL 273 (670)
T ss_dssp HHHCSEE
T ss_pred HhhCCEE
Confidence 7655543
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.61 E-value=1.3e-15 Score=189.10 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=105.2
Q ss_pred cccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhh-----hc-CceeccCc-C---Ccc-------
Q 002090 651 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----IC-GLMVPAES-A---SIP------- 709 (968)
Q Consensus 651 ~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la-----~~-g~~vp~~~-~---~~~------- 709 (968)
+.+.+ +++.++++++| |++++|+||||||||||||+|+|-.+.. .. ..|+++.. . .+.
T Consensus 441 ls~~y-g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~ 519 (986)
T 2iw3_A 441 FSLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE 519 (986)
T ss_dssp EEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHT
T ss_pred EEEEE-CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHH
Confidence 33444 45789999999 8999999999999999999998521100 00 12445432 1 111
Q ss_pred -------hHHHHHhhcCCC-CCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 002090 710 -------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 780 (968)
Q Consensus 710 -------~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g 780 (968)
.+..++..++.. +......+++|+|++|+..+++. +.+|+++||||||+|||+.....+...+.+ .|
T Consensus 520 ~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g 595 (986)
T 2iw3_A 520 SGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CG 595 (986)
T ss_dssp TCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SC
T ss_pred hhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CC
Confidence 123455667774 45567788999999998777666 899999999999999999887777444333 58
Q ss_pred cEEEEeccChhhhh-ccccccccccc
Q 002090 781 CLGIVSTHLHGIFS-LPLKIKNAAYK 805 (968)
Q Consensus 781 ~~vl~~TH~~el~~-~~~~~~~~~~~ 805 (968)
.++|++||+.+++. ++++...+.++
T Consensus 596 ~tvIivSHdl~~l~~~adrii~L~~G 621 (986)
T 2iw3_A 596 ITSITISHDSVFLDNVCEYIINYEGL 621 (986)
T ss_dssp SEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999998764 44544333333
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.59 E-value=2.8e-15 Score=183.47 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=61.0
Q ss_pred ccCCccchHHHHHHHHHHHHh-CCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 724 PADGKSSFQVEMSEIRSIVTA-TTS---RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 724 ~~~~~s~fs~~~~~~~~il~~-a~~---~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
.....+++|+|++|+..|+++ +.+ |+++||||||+|||+.....+ ..+++.+++.|.|+|++|||++++..+++.
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i-~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i 615 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL-LDVLHRLVDNGDTVLVIEHNLDVIKTADYI 615 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHhCCEE
Confidence 456678999999998887776 444 579999999999999988888 556666777799999999999987665543
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.58 E-value=5.4e-16 Score=156.90 Aligned_cols=126 Identities=12% Similarity=0.114 Sum_probs=77.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh---hhcCceeccCcCCcchHH----H------HHhhcCCCCCccCCccchHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL---GICGLMVPAESASIPYFD----A------IMLHMKSYDSPADGKSSFQVE 734 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l---a~~g~~vp~~~~~~~~~~----~------i~~~~~~~d~~~~~~s~fs~~ 734 (968)
|++++|+||||||||||+|++.+-... .....++++......... . .....+... ........+.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~s~g 87 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLT-VVDATNVQESA 87 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCE-EEESCCCSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeE-EEECCCCCHHH
Confidence 899999999999999999953221100 000012333322211111 1 111222211 11222334788
Q ss_pred HHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH----------------HHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 735 MSEIRSIVTA-TTSRSLVLIDEICRGTETAK----------------GTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 735 ~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~----------------~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
++|...+++. +.+|.+++||||++|+|+.. ...+ ..+++.+++.|.++|++||+++.+..
T Consensus 88 ~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l-~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 88 RKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM-KKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH-HHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh-hhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 8887766655 88999999999999999973 3444 44555566669999999999988754
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.57 E-value=2.4e-15 Score=186.78 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=61.3
Q ss_pred HHhhcCCCCC--ccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 714 IMLHMKSYDS--PADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 714 i~~~~~~~d~--~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
++..+|+... .....+++|+|++|...+++. +.+|+|+||||||+|||+.....+ .+.+.+.+.+||++||+.
T Consensus 883 ~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L----~~~L~~~g~tVIiISHD~ 958 (986)
T 2iw3_A 883 HCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEFEGGVIIITHSA 958 (986)
T ss_dssp HHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHH----HHHHHSCSSEEEEECSCH
T ss_pred HHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH----HHHHHHhCCEEEEEECCH
Confidence 4455566432 345678999999997777665 899999999999999999775444 445555578999999999
Q ss_pred hhhh-ccccc
Q 002090 791 GIFS-LPLKI 799 (968)
Q Consensus 791 el~~-~~~~~ 799 (968)
+++. ++++.
T Consensus 959 e~v~~l~DrV 968 (986)
T 2iw3_A 959 EFTKNLTEEV 968 (986)
T ss_dssp HHHTTTCCEE
T ss_pred HHHHHhCCEE
Confidence 8864 44443
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.52 E-value=1.3e-14 Score=188.55 Aligned_cols=157 Identities=14% Similarity=0.121 Sum_probs=109.9
Q ss_pred CccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceec
Q 002090 649 SPYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVP 702 (968)
Q Consensus 649 ~~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp 702 (968)
.++.+.|++ +.++++|++| |++++|+||||||||||+++|+|+.. +.+...+||
T Consensus 391 ~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 470 (1284)
T 3g5u_A 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVS 470 (1284)
T ss_dssp EEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEc
Confidence 344556653 3579999999 89999999999999999999999851 112245788
Q ss_pred cCcCCcc--hHHHHH------------------------hhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 703 AESASIP--YFDAIM------------------------LHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 703 ~~~~~~~--~~~~i~------------------------~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
|+...++ ..+++. ..+ |....+.....++|+|++|+..++++ +.+|+++||
T Consensus 471 Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 471 QEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp SSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8764321 112111 111 11222344556899999998877766 789999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccccccee
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~ 807 (968)
||||+++|+.....+ ...++.+. .|+|+|++||+++.+..+++...+.++.+
T Consensus 551 DEpts~LD~~~~~~i-~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i 602 (1284)
T 3g5u_A 551 DEATSALDTESEAVV-QAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVI 602 (1284)
T ss_dssp ESTTCSSCHHHHHHH-HHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCC
T ss_pred ECCCCCCCHHHHHHH-HHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 999999999765555 55555544 48999999999998876665544444443
No 63
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.51 E-value=9.4e-15 Score=190.00 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=104.8
Q ss_pred ccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceecc
Q 002090 650 PYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 703 (968)
Q Consensus 650 ~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp~ 703 (968)
++.+.|++ +..+++|+|| |++++|+||||||||||+++|+|+.. +.+...+|||
T Consensus 1035 ~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1035 GVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114 (1284)
T ss_dssp EEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEES
T ss_pred EEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECC
Confidence 34455543 2468999999 89999999999999999999999851 1233457888
Q ss_pred CcCCcc--hHHHH-----------------HhhcCC-----------CCCccCCccchHHHHHHHHHHHHh-CCCCcEEE
Q 002090 704 ESASIP--YFDAI-----------------MLHMKS-----------YDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVL 752 (968)
Q Consensus 704 ~~~~~~--~~~~i-----------------~~~~~~-----------~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlL 752 (968)
+...+. ..+++ ....+. ...+..+.+.+|+|++|+..+++. +.+|+++|
T Consensus 1115 ~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1115 EPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp SCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred CCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 763321 11111 111111 112233446899999998777766 78999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccc
Q 002090 753 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801 (968)
Q Consensus 753 lDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~ 801 (968)
|||||+|+|+.....+ ...++.+ ..|+|+|++||+++.+..+++.-.
T Consensus 1195 LDEpTs~lD~~~~~~i-~~~l~~~-~~~~tvi~isH~l~~i~~~dri~v 1241 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVV-QEALDKA-REGRTCIVIAHRLSTIQNADLIVV 1241 (1284)
T ss_dssp EESCSSSCCHHHHHHH-HHHHHHH-SSSSCEEEECSCTTGGGSCSEEEE
T ss_pred EeCCcccCCHHHHHHH-HHHHHHh-CCCCEEEEEecCHHHHHcCCEEEE
Confidence 9999999999877776 4444544 358999999999998766554433
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.51 E-value=3.9e-14 Score=174.53 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=66.7
Q ss_pred HHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEecc
Q 002090 714 IMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTS---RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788 (968)
Q Consensus 714 i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~---~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH 788 (968)
++..+++.. .+.....++|+|++|...+++. +.+ |+|+||||||+|||+.+...+ ..+++.+.+.|.|||++||
T Consensus 713 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~~G~tVIvisH 791 (842)
T 2vf7_A 713 TLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERL-QRQLVKLVDAGNTVIAVEH 791 (842)
T ss_dssp HHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECC
T ss_pred HHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEcC
Confidence 344455544 3467778999999998888777 443 799999999999999888888 6666667778999999999
Q ss_pred Chhhhhccccc
Q 002090 789 LHGIFSLPLKI 799 (968)
Q Consensus 789 ~~el~~~~~~~ 799 (968)
+++++..+++.
T Consensus 792 dl~~i~~aDri 802 (842)
T 2vf7_A 792 KMQVVAASDWV 802 (842)
T ss_dssp CHHHHTTCSEE
T ss_pred CHHHHHhCCEE
Confidence 99988665543
No 65
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.51 E-value=4.7e-14 Score=175.93 Aligned_cols=284 Identities=11% Similarity=0.083 Sum_probs=188.0
Q ss_pred eeechhhhc--ccCCC-CC----CCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc----------
Q 002090 288 LHLGTATQI--GAIPT-EG----IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV---------- 350 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~-~~----~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~---------- 350 (968)
|.||.+|.+ +++++ .+ ..||+++ +++|.|+||+|+||+|+..|+. ++ +.|++|+++|+.|
T Consensus 300 m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~-ld~t~T~~G~RlLr~wl~~Pl~-d~-~~I~~R~d~Ve~l~~~~~~~~~l 376 (934)
T 3thx_A 300 MKLDIAAVRALNLFQGSVEDTTGSQSLAAL-LNKCKTPQGQRLVNQWIKQPLM-DK-NRIEERLNLVEAFVEDAELRQTL 376 (934)
T ss_dssp CEECHHHHHHTTSCC---------CCHHHH-HCCCSSHHHHHHHHHHHHSCBC-CH-HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred EEeCHHHHhhccccccCCCCCCCCCcHHHH-hccCCCHHHHHHHHHHHhCcCC-CH-HHHHHHHHHHHHHhhChHHHHHH
Confidence 899999998 77776 21 3499999 9999999999999999999999 99 9999999999975
Q ss_pred ----ccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhc---CcccccccccccHHHHHHHHHH
Q 002090 351 ----TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLM---DPTWVATGLKIDFETLVEECRL 423 (968)
Q Consensus 351 ----l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l---~~~~~~~~~~~dlerl~~~~~~ 423 (968)
|+++||++||.+|+..++++++|+..|+..+..+ |.+.+.|.... .+. +..-+...+...+..+..
T Consensus 377 ~~~~L~~i~DleRl~~ri~~~~~~~~dl~~l~~~l~~~------~~l~~~l~~~~~~~~~~-l~~~~~~~l~~~~~~l~~ 449 (934)
T 3thx_A 377 QEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQL------PNVIQALEKHEGKHQKL-LLAVFVTPLTDLRSDFSK 449 (934)
T ss_dssp HTTTGGGCCCHHHHHHHHHTTCCCHHHHHHHHHHHTTH------HHHHHHHHHTCCSSSTT-GGGGTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHH------HHHHHHHHhcccccchH-HHHHHHHHHHHHHhhHHH
Confidence 7889999999999999999999999999999999 88888887543 111 011112234445566666
Q ss_pred HhhchhhhhhccCCchhhhccc-CCCchhHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCch-hh--hhhhc
Q 002090 424 ASVRIGEMISLDGESDQKICSY-DNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFL-PI--ISRIK 499 (968)
Q Consensus 424 ~~~~i~~~i~l~~e~~~~~~~~-~~I~~~~~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~-p~--~~~e~ 499 (968)
..+.++..+. +++ ...+ .+|++||++++|. ++ +.++++++-...+...+.++.. +. ..+.+
T Consensus 450 ~~~~i~~~i~--~~~---~~~g~~~i~~g~~~~Ld~-lr---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~ 514 (934)
T 3thx_A 450 FQEMIETTLD--MDQ---VENHEFLVKPSFDPNLSE-LR---------EIMNDLEKKMQSTLISAARDLGLDPGKQIKLD 514 (934)
T ss_dssp HHHHHHTTBC--TTG---GGTTCCCBCTTSSHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHSCCCBTTTBEEE
T ss_pred HHHHHHHHhC--cch---hhcCCceeCCCCCHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 6677777775 444 2456 7999999999972 22 2233333333332222222220 10 01111
Q ss_pred ccccCCCCCChhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEEe---ehHHHHHHHHHHHHH
Q 002090 500 ATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWF---STLKVEEALERYHEA 576 (968)
Q Consensus 500 ~~i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f---~T~eL~ea~~k~~~a 576 (968)
.. +.-|+-.++.-... . .+. . -..+++.++.++..+|.++. ...++.++.+++.+.
T Consensus 515 ~~--~~~Gy~i~v~~~~~-~---------~~~----~-----~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~ 573 (934)
T 3thx_A 515 SS--AQFGYYFRVTCKEE-K---------VLR----N-----NKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEA 573 (934)
T ss_dssp EC--C--CEEEEECHHHH-T---------TTT----T-----CSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHH
T ss_pred Ee--ccceEEEEEEechh-h---------ccC----C-----CCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 10 01122112211100 0 000 0 01234445555556665542 234566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002090 577 GAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFA 617 (968)
Q Consensus 577 e~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~ 617 (968)
+.++..++.+.+.+....++..+..+..+|.++++|.+...
T Consensus 574 e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~ 614 (934)
T 3thx_A 574 QDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNG 614 (934)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999887654
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.50 E-value=1.1e-13 Score=159.47 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHh-CCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccccccccccee
Q 002090 731 FQVEMSEIRSIVTA-TTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 807 (968)
Q Consensus 731 fs~~~~~~~~il~~-a~~~--~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~ 807 (968)
+|+|++++..++.. +.+| +++||||||+|||+.....+. .+++.+. .|.+||++||+++++..+++...+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l----- 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVVTHLAQIAARAHHHYKV----- 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEECSCHHHHTTCSEEEEE-----
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEE-----
Confidence 59999986655444 6788 999999999999998888874 4445555 489999999999887665432221
Q ss_pred EEEeeCCceeeeeeeecCCCCCcHHHHHHHHc-C-CCHHHHHHHHHHHH
Q 002090 808 GTEYLDGQTVPTWKLVDGICRESLAFETAKRE-G-VPETIIQRAEDLYI 854 (968)
Q Consensus 808 ~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~-g-lp~~vi~rA~~~~~ 854 (968)
.....+|.+....+... ...---++|+++ | +.++-++.|+++++
T Consensus 369 ~k~~~~G~~~~~~~~l~---~~~~~~ei~~~~~g~~~~~~~~~a~~~~~ 414 (415)
T 4aby_A 369 EKQVEDGRTVSHVRLLT---GDERLEEIARMLSGNTSEAALEHARELLA 414 (415)
T ss_dssp EEEEETTEEEEEEEECC---SHHHHHHHHHHHHSSCCHHHHHHHHHHHC
T ss_pred EEeccCCceEEEEEECC---chhhHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 11224555443322211 112234677766 4 67888899988763
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.50 E-value=4.1e-14 Score=174.47 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=66.6
Q ss_pred HHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEecc
Q 002090 714 IMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788 (968)
Q Consensus 714 i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~---~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH 788 (968)
++..+++.. .+.....++|+|++|...++.. +. +|+|+||||||+|||+.+...+ ..+++.+.+.|.|||++||
T Consensus 828 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~~G~TVIvisH 906 (972)
T 2r6f_A 828 TLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL-LDVLHRLVDNGDTVLVIEH 906 (972)
T ss_dssp HHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECC
T ss_pred HHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEcC
Confidence 445566655 5667788999999998777766 44 4699999999999999888888 5566667778999999999
Q ss_pred Chhhhhcccc
Q 002090 789 LHGIFSLPLK 798 (968)
Q Consensus 789 ~~el~~~~~~ 798 (968)
+++++..+++
T Consensus 907 dl~~i~~aDr 916 (972)
T 2r6f_A 907 NLDVIKTADY 916 (972)
T ss_dssp CHHHHTTCSE
T ss_pred CHHHHHhCCE
Confidence 9998765544
No 68
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.50 E-value=2e-13 Score=177.96 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=113.1
Q ss_pred CccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceec
Q 002090 649 SPYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVP 702 (968)
Q Consensus 649 ~~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp 702 (968)
.++.|.|++ ++++++|++| |+.++|+||+||||||++++|.|... +.+...+||
T Consensus 419 ~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 419 ENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp EEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccC
Confidence 455566653 5789999999 89999999999999999999999851 122345788
Q ss_pred cCcCCcc--hHHHH------------------------Hhhc--CCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002090 703 AESASIP--YFDAI------------------------MLHM--KSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLI 753 (968)
Q Consensus 703 ~~~~~~~--~~~~i------------------------~~~~--~~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLl 753 (968)
|+...+. ..++| ...+ |..-.+..+-..+|+|++|+..++++ ..+|+++||
T Consensus 499 Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliL 578 (1321)
T 4f4c_A 499 QEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLL 578 (1321)
T ss_dssp SSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Confidence 8765431 11221 1122 22222344456899999998777776 899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeEEE
Q 002090 754 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 810 (968)
Q Consensus 754 DEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~~~ 810 (968)
|||||++|+.....+ ...++.+. +|+|+|++||.+.....+++.-.+.++.+...
T Consensus 579 DE~tSaLD~~te~~i-~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 579 DEATSALDAESEGIV-QQALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVVEV 633 (1321)
T ss_dssp ESTTTTSCTTTHHHH-HHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEEETTEEEEE
T ss_pred ecccccCCHHHHHHH-HHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEeeCCeeecc
Confidence 999999999775555 44444444 48999999999988877776555555554433
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.49 E-value=7e-14 Score=172.98 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=65.4
Q ss_pred HHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEecc
Q 002090 714 IMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788 (968)
Q Consensus 714 i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~---~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH 788 (968)
++..+++.. .+.....++|+|++|...++.. +. +|+|+||||||+|||+.+...+ ..+++.+.+.|.|||++||
T Consensus 846 ~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~~G~TVIvisH 924 (993)
T 2ygr_A 846 TLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKL-LNVINGLVDKGNTVIVIEH 924 (993)
T ss_dssp HHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECC
T ss_pred HHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEcC
Confidence 344455554 4566788999999998777766 44 4699999999999999888888 5566667778999999999
Q ss_pred Chhhhhcccc
Q 002090 789 LHGIFSLPLK 798 (968)
Q Consensus 789 ~~el~~~~~~ 798 (968)
+++++..+++
T Consensus 925 dl~~i~~aDr 934 (993)
T 2ygr_A 925 NLDVIKTSDW 934 (993)
T ss_dssp CHHHHTTCSE
T ss_pred CHHHHHhCCE
Confidence 9998765443
No 70
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.47 E-value=1.2e-13 Score=171.52 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=65.2
Q ss_pred HhhcCCCC-CccCCccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 715 MLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 715 ~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~---~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
+..+|+.. .+.+..+++|+|++|...+++. +. +|+|+||||||+|||+.+...+ ..+++.+.+.|.|||++||+
T Consensus 789 L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L-~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 789 LHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKL-VEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp HHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECCC
T ss_pred HHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEeCC
Confidence 33445432 3456678999999998887766 33 4689999999999999888888 56666677789999999999
Q ss_pred hhhhhccccc
Q 002090 790 HGIFSLPLKI 799 (968)
Q Consensus 790 ~el~~~~~~~ 799 (968)
++++..+++.
T Consensus 868 L~~i~~ADrI 877 (916)
T 3pih_A 868 LDVIKNADHI 877 (916)
T ss_dssp HHHHTTCSEE
T ss_pred HHHHHhCCEE
Confidence 9988765544
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.45 E-value=5.4e-14 Score=143.19 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=76.6
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC-----cCCcchH-------HHHHhhcCCC--CCccCCccchHHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-----SASIPYF-------DAIMLHMKSY--DSPADGKSSFQVEM 735 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~-----~~~~~~~-------~~i~~~~~~~--d~~~~~~s~fs~~~ 735 (968)
.++|+||||||||||+|+|+|+.-..-.|...... ...+++. +.++..++.. +.......++|+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 57999999999999999999987422222211000 0011100 0111111111 12344556799999
Q ss_pred HHHHHHHH------hCCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEecc---Chhhhh
Q 002090 736 SEIRSIVT------ATTSRSLVLIDE--ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH---LHGIFS 794 (968)
Q Consensus 736 ~~~~~il~------~a~~~~LlLlDE--p~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH---~~el~~ 794 (968)
++...++. .+.+|+++|||| |++++|+.....+ .+.+.+.+.++|++|| ++++++
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l----~~~l~~~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV----RQIMHDPNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH----HHHHTCTTSEEEEECCSSCCSHHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH----HHHHhcCCCeEEEEEccCCCchHHH
Confidence 99777766 489999999999 9999999765444 4444456777888886 555544
No 72
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.45 E-value=9.9e-14 Score=180.89 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=109.7
Q ss_pred CccccccCC--CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHH--------------------hhhcCceec
Q 002090 649 SPYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVP 702 (968)
Q Consensus 649 ~~~~~~~~~--~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~--------------------la~~g~~vp 702 (968)
.++.|.|++ +.+|++|+|| |+.++|+||+||||||+++++.++.- +.+...+||
T Consensus 1080 ~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~ 1159 (1321)
T 4f4c_A 1080 KNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVS 1159 (1321)
T ss_dssp EEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEEC
T ss_pred EEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEEC
Confidence 455666753 4579999999 89999999999999999999999851 223345789
Q ss_pred cCcCCcc--hHHH--------------H---HhhcC-----------CCCCccCCccchHHHHHHHHHHHHh-CCCCcEE
Q 002090 703 AESASIP--YFDA--------------I---MLHMK-----------SYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLV 751 (968)
Q Consensus 703 ~~~~~~~--~~~~--------------i---~~~~~-----------~~d~~~~~~s~fs~~~~~~~~il~~-a~~~~Ll 751 (968)
|+...+. ..++ + ....+ .+-.+..+-+.+|+|++|+..++++ ..+|+++
T Consensus 1160 Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1160 QEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp SSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred CCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 8865431 1111 1 11112 2222334456899999998777766 8999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccccccceeE
Q 002090 752 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 808 (968)
Q Consensus 752 LlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~~~~~~~~ 808 (968)
|||||||++|+..-..| ...++.+. .++|+|++||.+.....+++.-.+.++.+.
T Consensus 1240 iLDEaTSaLD~~tE~~I-q~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~Iv 1294 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVV-QEALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNGTII 1294 (1321)
T ss_dssp EEESCCCSTTSHHHHHH-HHHHTTTS-SSSEEEEECSSSSTTTTCSEEEEESSSSEE
T ss_pred EEeCccccCCHHHHHHH-HHHHHHHc-CCCEEEEeccCHHHHHhCCEEEEEECCEEE
Confidence 99999999999775555 33333322 489999999988877666655444455443
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.44 E-value=1.4e-13 Score=156.08 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=58.2
Q ss_pred CCccchHHHHHHHHHHHHh-C------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 726 DGKSSFQVEMSEIRSIVTA-T------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il~~-a------~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
...+++|+|++|...++.+ + .+|+++||||||+|||+.....+ ..+++.+.+.|.|+|++||++++...+++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~-~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKI-ASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHH-HHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3556899999997766444 3 69999999999999999888777 55666677779999999999998665543
No 74
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.41 E-value=4.5e-15 Score=154.94 Aligned_cols=128 Identities=16% Similarity=0.210 Sum_probs=70.4
Q ss_pred CceeeeeEeeceEEEEEecCCCCcchHHHHHHhHHHhhhcC------------------ceeccCc-CCc-chHHHHHhh
Q 002090 658 GSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICG------------------LMVPAES-ASI-PYFDAIMLH 717 (968)
Q Consensus 658 ~~~v~~~i~lg~~~~I~GpNGsGKSTllk~i~gl~~la~~g------------------~~vp~~~-~~~-~~~~~i~~~ 717 (968)
++.+++++.-|++++|+||||||||||+|+|+|+ ... .| .|+|+.. ..+ ......+..
T Consensus 12 ~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~ 89 (208)
T 3b85_A 12 QKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDA 89 (208)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHH-TTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHH
T ss_pred HHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCc-CCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHH
Confidence 3567777766999999999999999999999999 432 12 1333322 001 111001111
Q ss_pred cCC-CC--CccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 718 MKS-YD--SPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 718 ~~~-~d--~~~~~~s~fs~~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
+.. .+ .+...... ..||+|...+++. +.+|+++||||||+| ....+ ..++..+ +.|+++| +||+++.+
T Consensus 90 ~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l-~~~l~~l-~~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 90 LRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM-KMFLTRL-GFGSKMV-VTGDITQV 161 (208)
T ss_dssp HTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH-HHHHTTB-CTTCEEE-EEEC----
T ss_pred HHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH-HHHHHHh-cCCCEEE-EECCHHHH
Confidence 110 00 00000000 1155554444433 889999999999999 33444 4444444 5688999 99999887
Q ss_pred hc
Q 002090 794 SL 795 (968)
Q Consensus 794 ~~ 795 (968)
+.
T Consensus 162 ~~ 163 (208)
T 3b85_A 162 DL 163 (208)
T ss_dssp --
T ss_pred hC
Confidence 64
No 75
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.33 E-value=1.3e-11 Score=153.50 Aligned_cols=283 Identities=14% Similarity=0.100 Sum_probs=162.1
Q ss_pred eeechhhhc--ccCCC-C-C--CCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc-----------
Q 002090 288 LHLGTATQI--GAIPT-E-G--IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV----------- 350 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~-~-~--~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~----------- 350 (968)
|.||.+|++ |++.+ . + ..||+++ +|+|.|+||+|.||+|+..|+. +. ..|++|+++|+.+
T Consensus 319 m~LD~~T~rnLEL~~~~~~~~~~gSLl~~-Ld~t~T~mG~RlLr~Wl~~PL~-d~-~~I~~R~daVe~l~~~~~~~~~~l 395 (918)
T 3thx_B 319 MTINGTTLRNLEILQNQTDMKTKGSLLWV-LDHTKTSFGRRKLKKWVTQPLL-KL-REINARLDAVSEVLHSESSVFGQI 395 (918)
T ss_dssp CEECHHHHHHTTSSSCTTTCSSTTSHHHH-HCCCSSHHHHHHHHHHHHSCBC-CH-HHHHHHHHHHHHHHSCCCTHHHHH
T ss_pred EEECHHHHHhcCCcccCCCCCCCCcHHHH-HhhCCChHHHHHHHHHHhCcCC-CH-HHHHHHHHHHHHHHhCCcHHHHHH
Confidence 899999998 88877 2 2 2499999 9999999999999999999999 99 9999999999875
Q ss_pred ---ccCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCh-HHHHHHHHhcCcccccccccccHHHHHHHHHHHhh
Q 002090 351 ---TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNS-ELNEILELLMDPTWVATGLKIDFETLVEECRLASV 426 (968)
Q Consensus 351 ---l~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~-~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~ 426 (968)
|..+||++|+.+|+..++++|+|+..+++.+..+ + .+...+....... .+. -+.++...+.....
T Consensus 396 ~~~L~~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l------~~~l~~~l~~~~~~~--~~~---lL~~~~~~~~~~~~ 464 (918)
T 3thx_B 396 ENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHL------KSEFQAIIPAVNSHI--QSD---LLRTVILEIPELLS 464 (918)
T ss_dssp HHTTTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHTC--CCH---HHHHHHTHHHHHTG
T ss_pred HHHHccCccHHHHHHHhccCcCCHHHHHHHHHHHHHH------HHHHHHHHHHhhhhc--cCH---HHHHHHHhhhhhHH
Confidence 8899999999999999999999999999999887 4 3333332211000 000 12222222322222
Q ss_pred chhhhhhccC-CchhhhcccCCCchhH-HhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCchhhhhhhcccccC
Q 002090 427 RIGEMISLDG-ESDQKICSYDNIPSEF-FEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAP 504 (968)
Q Consensus 427 ~i~~~i~l~~-e~~~~~~~~~~I~~~~-~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~p~~~~e~~~i~~ 504 (968)
.+.++....+ ++......++.+.+.. +..+. .. +..+.+..+++++..+.+...|... +.+ .+..
T Consensus 465 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~----~~--~~~~~~~~~~~~~~l~~~~~~i~~~------~~~-~~~~ 531 (918)
T 3thx_B 465 PVEHYLKILNEQAAKVGDKTELFKDLSDFPLIK----KR--KDEIQGVIDEIRMHLQEIRKILKNP------SAQ-YVTV 531 (918)
T ss_dssp GGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHTCT------TCC-CEEE
T ss_pred HHHHHHHHHHHhhhhcCCccccccccccCHHHH----HH--HHHHHHHHHHHHHHHHHHHHHhCcc------cce-eEee
Confidence 2233222111 1111111123333311 11111 00 0111222222222222222222110 000 0000
Q ss_pred CCC-CChhhhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEEee---hHHHHHHHHHHHHHHHHH
Q 002090 505 LGG-PKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFS---TLKVEEALERYHEAGAKA 580 (968)
Q Consensus 505 tgg-~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~---T~eL~ea~~k~~~ae~~a 580 (968)
.|+ +-.++.... ..-.|..|.+ .++.++..+|.++.. ..++.++.+++...+.++
T Consensus 532 ~g~~y~iev~~~~---------~~~vp~~~~~------------~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~ 590 (918)
T 3thx_B 532 SGQEFMIEIKNSA---------VSCIPTDWVK------------VGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAE 590 (918)
T ss_dssp TTEEEEEEEETTS---------GGGSCSSCEE------------EEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEcHHH---------HhhCCCeEEE------------EEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 010 111111110 0011222221 123444556665533 235666777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002090 581 KAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAH 618 (968)
Q Consensus 581 ~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~~~ 618 (968)
+.++++.+.+....++..++.+..+|.++++|.+....
T Consensus 591 ~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~ 628 (918)
T 3thx_B 591 WLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQG 628 (918)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888899999999999999999998875543
No 76
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.29 E-value=1e-11 Score=138.39 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=55.5
Q ss_pred CccchHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccc
Q 002090 727 GKSSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 799 (968)
Q Consensus 727 ~~s~fs~~~~~~~~il~~-a----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~ 799 (968)
..+.+|.|++|+..++.. + .+|+++||||||++||+.....+. .+++.+. .|.++|++||+.++.+.++.+
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 346889999998777665 2 678999999999999998887774 4555554 488999999998776665543
No 77
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.26 E-value=1.2e-11 Score=131.69 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=38.8
Q ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 745 TTSRSLVLIDEICRGTE----TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD----~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
..+|+++++|||++++| +.........+++.+++.|+|+|++||+.+.+
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 57999999999999986 34555545888888888899999999998775
No 78
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1e-12 Score=152.85 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=77.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhc-------------CceeccCcCCcc------hHHHHH-------------
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------------GLMVPAESASIP------YFDAIM------------- 715 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~-------------g~~vp~~~~~~~------~~~~i~------------- 715 (968)
|++++|+||||||||||+|+|+|+...... ..++|+....++ ..+.+|
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~ 217 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN 217 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence 678999999999999999999999743221 224555432111 111121
Q ss_pred -----hhcCCCCCccCCccchHHHHHHHHHH-HH--hCCCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 002090 716 -----LHMKSYDSPADGKSSFQVEMSEIRSI-VT--ATTSRSL----VLIDE-ICRGTETAKGTCIAGSIIETLDNIGCL 782 (968)
Q Consensus 716 -----~~~~~~d~~~~~~s~fs~~~~~~~~i-l~--~a~~~~L----lLlDE-p~~GlD~~~~~~i~~~ll~~l~~~g~~ 782 (968)
..+|..+... ..++|++++|...+ .+ .+.+|++ +|||| |++|+|+. . ..+.+.+.+.+.+
T Consensus 218 ~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~--~---~~l~~l~~~~~~t 290 (460)
T 2npi_A 218 KQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN--L---AELHHIIEKLNVN 290 (460)
T ss_dssp BCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS--C---HHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh--H---HHHHHHHHHhCCC
Confidence 1112211111 45788899885554 44 5789999 99999 99999996 2 3333444455889
Q ss_pred EEEeccChh
Q 002090 783 GIVSTHLHG 791 (968)
Q Consensus 783 vl~~TH~~e 791 (968)
+|++||+++
T Consensus 291 viiVth~~~ 299 (460)
T 2npi_A 291 IMLVLCSET 299 (460)
T ss_dssp EEEEECCSS
T ss_pred EEEEEccCc
Confidence 999999987
No 79
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.25 E-value=3.5e-11 Score=135.01 Aligned_cols=70 Identities=11% Similarity=-0.030 Sum_probs=53.2
Q ss_pred CccchHHHHHHHHHH-------HHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 727 GKSSFQVEMSEIRSI-------VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 727 ~~s~fs~~~~~~~~i-------l~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
..+.+|+|+++...+ ...+.+|+++||||||+|||+.....+ ..+++.+.+.|.++|++||+.++.+.++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l-~~~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHH-HHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 456799999984322 223679999999999999999888877 4455555666889999999987765544
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.24 E-value=6.9e-13 Score=138.15 Aligned_cols=130 Identities=10% Similarity=0.002 Sum_probs=69.3
Q ss_pred CCceeeeeEee--ceEEEEEecCCCCcchHHHHHHhHHHh-h---------------hcCceeccCcCCcchHHHHHhhc
Q 002090 657 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLL-G---------------ICGLMVPAESASIPYFDAIMLHM 718 (968)
Q Consensus 657 ~~~~v~~~i~l--g~~~~I~GpNGsGKSTllk~i~gl~~l-a---------------~~g~~vp~~~~~~~~~~~i~~~~ 718 (968)
+..+++++.++ |++++|+||||||||||+|+|+|+..- . ....++|+.. ..|..+
T Consensus 7 ~~~~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~-------~~~~~~ 79 (207)
T 1znw_A 7 DTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDP-------TRFQQL 79 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCH-------HHHHHH
T ss_pred CCCcCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCH-------HHHHHH
Confidence 34567777666 899999999999999999999998620 0 0011222221 222222
Q ss_pred CCCCCccC-----------Cccc-----------------hHHHHHHHHHHH-----HhCCCCcEEEEeCCCCCC----C
Q 002090 719 KSYDSPAD-----------GKSS-----------------FQVEMSEIRSIV-----TATTSRSLVLIDEICRGT----E 761 (968)
Q Consensus 719 ~~~d~~~~-----------~~s~-----------------fs~~~~~~~~il-----~~a~~~~LlLlDEp~~Gl----D 761 (968)
...+++.. +.+. -..++.+..... ..+.+|++++||||++|+ |
T Consensus 80 ~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d 159 (207)
T 1znw_A 80 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETA 159 (207)
T ss_dssp HHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCH
T ss_pred HhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCH
Confidence 22222110 0000 001111111110 014578999999999998 6
Q ss_pred HHHHHHHHHHHHHHHH-hcCcEEEEeccChhhhh
Q 002090 762 TAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 762 ~~~~~~i~~~ll~~l~-~~g~~vl~~TH~~el~~ 794 (968)
+.....+ ..+++.+. +.|.++|++|||++.+.
T Consensus 160 ~~~~~~l-~~~l~~l~~~~g~tvi~vtHdl~~~~ 192 (207)
T 1znw_A 160 DVIQRRL-DTARIELAAQGDFDKVVVNRRLESAC 192 (207)
T ss_dssp HHHHHHH-HHHHHHHHGGGGSSEEEECSSHHHHH
T ss_pred HHHHHHH-HHHHHHHhhhccCcEEEECCCHHHHH
Confidence 6666666 44555565 46899999999998764
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.23 E-value=1.6e-11 Score=155.10 Aligned_cols=281 Identities=12% Similarity=0.047 Sum_probs=158.3
Q ss_pred eeechhhhc--ccCCC-C-C--CCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc-----------
Q 002090 288 LHLGTATQI--GAIPT-E-G--IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV----------- 350 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~-~-~--~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~----------- 350 (968)
|.||.+|.+ |++++ . + ..||+++ +|+|+|+||+|+||+|+..|+. ++ +.|++|+++|+.|
T Consensus 395 m~LD~~T~~nLEl~~~~~~g~~~gSLl~~-Ld~t~T~mG~RLLr~WL~~PL~-d~-~~I~~RldaVe~l~~~~~~~~~l~ 471 (1022)
T 2o8b_B 395 MVLDAVTLNNLEIFLNGTNGSTEGTLLER-VDTCHTPFGKRLLKQWLCAPLC-NH-YAINDRLDAIEDLMVVPDKISEVV 471 (1022)
T ss_dssp CBCCHHHHHHTTCSSCCSSSSCCCSHHHH-HCCCSSHHHHHHHHHHHHSCBC-CH-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EEeCHHHHHhhcCCccCCCCCCCCcHHHH-hCcCCCchhHHHHHHHHhCccC-CH-HHHHHHHHHHHHHHhChHHHHHHH
Confidence 899999988 78876 2 2 2499999 9999999999999999999999 99 9999999999987
Q ss_pred --ccCCccHHHHHHHHHh-cc-------------------CCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcc--c-
Q 002090 351 --TCSIPEFTCLVKLLEL-RE-------------------ANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPT--W- 405 (968)
Q Consensus 351 --l~~i~dlrrL~~~l~~-p~-------------------a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~--~- 405 (968)
|+.+||++||.+||.. +. ++++++..+.+.++.+..+ +.+...+....... .
T Consensus 472 ~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~---~~i~~~l~~~~~~~~s~l 548 (1022)
T 2o8b_B 472 ELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVM---CKIIGIMEEVADGFKSKI 548 (1022)
T ss_dssp HHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCCCHH
T ss_pred HHHhcCccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHH---HHHHHHHHhhhcccCcHH
Confidence 8999999999999988 43 2455666666554322111 44444443211100 0
Q ss_pred c-----c-----ccccccHHHHHHHHHHHhhchhhhhhccCCchhhhcccCCC-chhHHhhcchhhhhhhhhcccchhHH
Q 002090 406 V-----A-----TGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNI-PSEFFEDMESTWKGRVKRIHIEPEIA 474 (968)
Q Consensus 406 ~-----~-----~~~~~dlerl~~~~~~~~~~i~~~i~l~~e~~~~~~~~~~I-~~~~~~~ld~~~~g~v~~~~~~~~l~ 474 (968)
+ . .+.+.++..++.. ++..+. ++ .....+.++ .+||++++|. .+ .
T Consensus 549 L~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~id--~~--~~~~~g~i~~~~g~~~~ld~-~r------------~ 604 (1022)
T 2o8b_B 549 LKQVISLQTKNPEGRFPDLTVELNR-------WDTAFD--HE--KARKTGLITPKAGFDSDYDQ-AL------------A 604 (1022)
T ss_dssp HHHHTSBTTTSSSSCBCCCHHHHHH-------HHTTSC--HH--HHHHSCCCCCTTCC-CHHHH-HH------------H
T ss_pred HHHHHHhhccccccchHHHHHHHHH-------HHHHhC--ch--hhhcCCcEeeCCCCCHHHHH-HH------------H
Confidence 0 0 0011233332222 222222 11 123344444 5688888862 21 2
Q ss_pred HHHHHHHHHHHHhhcCchhhh-hhhccc-ccCCCCCChhhhhhhcccceeeeccccccccccCCCCcccccccccccccC
Q 002090 475 EVEMAAEALSLAVTEDFLPII-SRIKAT-TAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSK 552 (968)
Q Consensus 475 el~~~~~~L~~aI~~d~~p~~-~~e~~~-i~~tgg~~~ki~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~ 552 (968)
.+++..+.|...+.+.-..+- ...+-. ++ .+++-.++....... ..|..|.......+...+...
T Consensus 605 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~y~i~v~~~~~~~--------~vp~~~~~~~t~~~~~rf~t~---- 671 (1022)
T 2o8b_B 605 DIRENEQSLLEYLEKQRNRIGCRTIVYWGIG-RNRYQLEIPENFTTR--------NLPEEYELKSTKKGCKRYWTK---- 671 (1022)
T ss_dssp HHHHHHHHHHHHHTSSGGGSSCSCCEEECCG-GGCCEEEECTTTTSS--------CCCC-CEEEEETTEEEECCTT----
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeEEEec-CceEEEEEehhhhcc--------cCCCceEEeeeccCccEEech----
Confidence 333444444333332110000 001100 10 011111221110000 011112111122222222211
Q ss_pred CCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002090 553 GRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALF 616 (968)
Q Consensus 553 g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL~~~L~~~i~~L~~~~~lla~Adal~ 616 (968)
... ....++.++.+++...+.++..++.+.+.+....++..+..+..++.++++|.+..
T Consensus 672 -el~----~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~ 730 (1022)
T 2o8b_B 672 -TIE----KKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSR 730 (1022)
T ss_dssp -THH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 111 12446777888888888888888888888889999999999999999999987654
No 82
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.16 E-value=2.4e-11 Score=127.68 Aligned_cols=129 Identities=9% Similarity=0.057 Sum_probs=73.0
Q ss_pred eEeeceEEEEEecCCCCcchHHHHHHhHHHhhh-----c--CceeccCcC-CcchHHHHHhhcCCC-----CCccCCccc
Q 002090 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGI-----C--GLMVPAESA-SIPYFDAIMLHMKSY-----DSPADGKSS 730 (968)
Q Consensus 664 ~i~lg~~~~I~GpNGsGKSTllk~i~gl~~la~-----~--g~~vp~~~~-~~~~~~~i~~~~~~~-----d~~~~~~s~ 730 (968)
.+.-|++++|+||||||||||+++++|...... . ..++..+.. ....+..++..++.. +++......
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 344489999999999999999999999754311 1 122222221 111222344444332 121111111
Q ss_pred hHHHHH----HHHHHHHh----CCCCcEEEEeCCCCCCCHHH------------HHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 731 FQVEMS----EIRSIVTA----TTSRSLVLIDEICRGTETAK------------GTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 731 fs~~~~----~~~~il~~----a~~~~LlLlDEp~~GlD~~~------------~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
...+.. ++..++.. ..+|+++++|||++++|+.. ...+...+.+..++.|+++|++||..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 111211 12222221 45899999999999998831 12455555555566799999999965
Q ss_pred hh
Q 002090 791 GI 792 (968)
Q Consensus 791 el 792 (968)
+.
T Consensus 181 ~~ 182 (231)
T 4a74_A 181 AN 182 (231)
T ss_dssp --
T ss_pred cC
Confidence 54
No 83
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.14 E-value=9.7e-11 Score=127.63 Aligned_cols=133 Identities=19% Similarity=0.154 Sum_probs=80.3
Q ss_pred eeeeeEeeceEEEEEecCCCCcchHHHHHHhHHHhh-----------hcCceeccCcCCcch---HH------------H
Q 002090 660 AVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLG-----------ICGLMVPAESASIPY---FD------------A 713 (968)
Q Consensus 660 ~v~~~i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-----------~~g~~vp~~~~~~~~---~~------------~ 713 (968)
.++.++.-|++++|+||||+|||||++++++.+... ....|+..+...... +. .
T Consensus 22 ~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 22 YVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp EEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHH
T ss_pred eeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhh
Confidence 344445558999999999999999999999865421 111244333221111 00 1
Q ss_pred HHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCC--CCCHHHH---HHHHHHHHHHHHhcCcEEEEecc
Q 002090 714 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICR--GTETAKG---TCIAGSIIETLDNIGCLGIVSTH 788 (968)
Q Consensus 714 i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~--GlD~~~~---~~i~~~ll~~l~~~g~~vl~~TH 788 (968)
+...+.+.+........++.++.+.. .+.+.+|++||+|||++ ++|+... ..+...+.+..++.|+++|++||
T Consensus 102 ~~~~l~l~~~~~~~~~~ls~g~~~~i--~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H 179 (279)
T 1nlf_A 102 VADGLLIQPLIGSLPNIMAPEWFDGL--KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH 179 (279)
T ss_dssp HHHHEEECCCTTSCCCTTSHHHHHHH--HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred ccCceEEeecCCCCcccCCHHHHHHH--HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 12233333333344566777765543 33456899999999999 9987433 45544554544567999999999
Q ss_pred Chhhhh
Q 002090 789 LHGIFS 794 (968)
Q Consensus 789 ~~el~~ 794 (968)
+.....
T Consensus 180 ~~~~~~ 185 (279)
T 1nlf_A 180 ASKGAA 185 (279)
T ss_dssp C-----
T ss_pred CCCccc
Confidence 887643
No 84
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.10 E-value=1.9e-10 Score=141.87 Aligned_cols=306 Identities=12% Similarity=0.104 Sum_probs=194.2
Q ss_pred eeechhhhc--ccCCC-C--CCCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc----------cc
Q 002090 288 LHLGTATQI--GAIPT-E--GIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV----------TC 352 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~-~--~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~----------l~ 352 (968)
|.||..|.+ |++++ + ...||+++ +++|.|+||+|.||+|++.|+. ++ +.|++|++.++.+ |.
T Consensus 267 m~ld~~t~~~LEl~~~~~~~~~gSL~~l-l~~t~T~~G~RlL~~wl~~Pl~-d~-~~I~~R~~~v~~~~~~~~~l~~~L~ 343 (800)
T 1wb9_A 267 IIMDAATRRNLEITQNLAGGAENTLASV-LDCTVTPMGSRMLKRWLHMPVR-DT-RVLLERQQTIGALQDFTAGLQPVLR 343 (800)
T ss_dssp CEECHHHHHHTTSSSCTTSCSTTSHHHH-HCCCSSHHHHHHHHHHHHSCBC-CH-HHHHHHHHHHHHTGGGHHHHHHHHH
T ss_pred EEecHHHHHhccCcccCCCCccccHHHH-hCCCcCHHHHHHHHHHhhCCCC-CH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789988877 77766 2 12489988 9999999999999999999999 99 9999999999875 78
Q ss_pred CCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccccHHHHHHHHHHHhhchhhhh
Q 002090 353 SIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMI 432 (968)
Q Consensus 353 ~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~~~l~~~~~~~~~~~dlerl~~~~~~~~~~i~~~i 432 (968)
++||++|+.+++..+.++++|+..|+..+..+ +.+++.+.....+ ++..+...+..+....+.++.++
T Consensus 344 ~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~------~~l~~~l~~~~~~------~L~~l~~~l~~~~~l~~~i~~~i 411 (800)
T 1wb9_A 344 QVGDLERILARLALRTARPRDLARMRHAFQQL------PELRAQLETVDSA------PVQALREKMGEFAELRDLLERAI 411 (800)
T ss_dssp TTCSHHHHHHHHHHTCCCHHHHHHHHHHHTTH------HHHHHHHHSCCCH------HHHHHHHHHCCCHHHHHHHHHHB
T ss_pred CCccHHHHHHHHHcCCCCHHHHHHHHHHHHHH------HHHHHHHHhcCcH------HHHHHHHhcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 7777777643222 11122222333445555666666
Q ss_pred hccCCchhhhcccCCCchhHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHHhhcCch-hhhhhhcccccCCCCCChh
Q 002090 433 SLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFL-PIISRIKATTAPLGGPKGE 511 (968)
Q Consensus 433 ~l~~e~~~~~~~~~~I~~~~~~~ld~~~~g~v~~~~~~~~l~el~~~~~~L~~aI~~d~~-p~~~~e~~~i~~tgg~~~k 511 (968)
. ++||....+++.|++++++++|. ++. ...+.++....+.....+... +. .+.+.. +..|+-.+
T Consensus 412 ~--~~~~~~~~~~~~I~~g~~~eLd~-lr~---------~~~~~~~~l~~~~~~~~~~~~~~~-l~i~~~--~~~gy~i~ 476 (800)
T 1wb9_A 412 I--DTPPVLVRDGGVIASGYNEELDE-WRA---------LADGATDYLERLEVRERERTGLDT-LKVGFN--AVHGYYIQ 476 (800)
T ss_dssp C--SSCCSCSTTCCCBCTTSCHHHHH-HHH---------HHHHHHHHHHHHHHHHHHHHTCTT-CEEEEE--TTTEEEEE
T ss_pred C--cCchhhhhcCCeeCCCCCHHHHH-HHH---------HHHHHHHHHHHHHHHHHHHhCCCc-eEEEec--CcceEEEE
Confidence 5 88888889999999999999972 222 222222222222222111110 10 011100 11122222
Q ss_pred hhhhhcccceeeeccccccccccCCCCcccccccccccccCCCccCcEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002090 512 ILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGL 591 (968)
Q Consensus 512 i~y~~~~g~v~l~~~~~~~~~~~~~~~~~~I~~l~~~~s~~g~~v~~e~f~T~eL~ea~~k~~~ae~~a~~~i~eil~eL 591 (968)
+....... ++. -|.+....++...++.+. .+ ....++.++.+++.+.+.+++.++.+.+...
T Consensus 477 V~~~~~~~---vp~------~~i~~~s~~~~~~f~tp~-----l~----~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~ 538 (800)
T 1wb9_A 477 ISRGQSHL---API------NYMRRQTLKNAERYIIPE-----LK----EYEDKVLTSKGKALALEKQLYEELFDLLLPH 538 (800)
T ss_dssp EEHHHHTT---SCT------TCEEEEECSSEEEEECHH-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred Eecccccc---CCc------ceEEeeeccCCCEEeCHH-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111110 010 111111111222222210 11 1244677788888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcc-cCccccccccCcceeEE
Q 002090 592 SSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWV-FPALKDIELDGANCLKM 645 (968)
Q Consensus 592 ~~~L~~~i~~L~~~~~lla~Adal~~~a~~a~~~~~~-~P~~~~~~~~~~~~~~~ 645 (968)
...++..++.+..+|.++++|.+...+-+ .+.... .+.+. +.++|||+..
T Consensus 539 ~~~l~~~~~~la~lD~l~s~A~~a~~~~~--~~P~~~~~~~i~--i~~~rHP~le 589 (800)
T 1wb9_A 539 LEALQQSASALAELDVLVNLAERAYTLNY--TCPTFIDKPGIR--ITEGRHPVVE 589 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC--BCCEECSSSCEE--EEEECCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cccEECCCCCEE--EEeccccEEE
Confidence 99999999999999999999887554432 222222 23332 5567777653
No 85
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.09 E-value=2.9e-10 Score=139.57 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=91.4
Q ss_pred eeechhhhc--ccCCC-CCCCccceEecCCCccCCCHHHHHhhccCCCcchHHHHHHHHHhhhhhc-------------c
Q 002090 288 LHLGTATQI--GAIPT-EGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV-------------T 351 (968)
Q Consensus 288 LyLd~~Tq~--~ll~~-~~~~sll~~~l~~~~~~m~~r~Lr~L~l~p~~~sl~~~I~~~~t~~g~~-------------l 351 (968)
|.||..|.+ |+.++ .|..+|+++ +++|.|+||+|.||+|++.|+. +. +.|++|++.++.+ |
T Consensus 250 m~lD~~t~~~LEl~~~~~~~gsL~~~-ld~t~T~~G~RlL~~wl~~Pl~-d~-~~I~~R~~~V~~l~~~~~~~~~l~~~L 326 (765)
T 1ewq_A 250 MRLPEATLRALEVFEPLRGQDTLFSV-LDETRTAPGRRLLQSWLRHPLL-DR-GPLEARLDRVEGFVREGALREGVRRLL 326 (765)
T ss_dssp CBCCHHHHHHTTSSSCSSSCCCHHHH-HCCCSSHHHHHHHHHHHHSCCC-CH-HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EEecHHHHHhCcCccCCCccchHHHH-hCCCCCHHHHHHHHHHhhCcCC-CH-HHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 789988887 67765 233489999 9999999999999999999999 98 9999999999876 7
Q ss_pred cCCccHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcChHHHHHHH
Q 002090 352 CSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILE 398 (968)
Q Consensus 352 ~~i~dlrrL~~~l~~p~a~~~d~~~I~~rl~~v~~l~~~~~l~~~l~ 398 (968)
.++||++|+.+++..+.++++|+..|+..+..+ +.++..+.
T Consensus 327 ~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~------~~l~~~l~ 367 (765)
T 1ewq_A 327 YRLADLERLATRLELGRASPKDLGALRRSLQIL------PELRALLG 367 (765)
T ss_dssp TTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHH------HHHHHHHC
T ss_pred hcCCCHHHHHHHHHcCCCCHHHHHHHHHHHHHH------HHHHHHHH
Confidence 999999999999999999999999999999999 77777764
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.07 E-value=3.5e-10 Score=118.70 Aligned_cols=122 Identities=13% Similarity=0.007 Sum_probs=69.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhc-CceeccCcCCcchHHHHHhhcCCCCC-cc--------C---------Cc
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGIC-GLMVPAESASIPYFDAIMLHMKSYDS-PA--------D---------GK 728 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~-g~~vp~~~~~~~~~~~i~~~~~~~d~-~~--------~---------~~ 728 (968)
|++++|+||||+|||||++++++....... ..++..+.. ...+...+..++.... .. . ..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSL 101 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeee
Confidence 789999999999999999999987653221 122222221 1111111112221100 00 0 00
Q ss_pred cchHHHH-HHHHHHHHhCCCCc--EEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 729 SSFQVEM-SEIRSIVTATTSRS--LVLIDEICRGT--ETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 729 s~fs~~~-~~~~~il~~a~~~~--LlLlDEp~~Gl--D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
...+.+. .+.........+|+ ++++|||++++ |+.....+...+.+..++.|+++|++||+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 102 VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 1112222 22222222235789 99999999877 997777776666665566799999999988
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.07 E-value=2.5e-10 Score=125.39 Aligned_cols=131 Identities=12% Similarity=0.108 Sum_probs=71.5
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhc--CceeccCcCCcchHHHH-------------------
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC--GLMVPAESASIPYFDAI------------------- 714 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~--g~~vp~~~~~~~~~~~i------------------- 714 (968)
.+++++++ |++++|+||||+|||||+++|++....... ..++..+........++
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 45566655 799999999999999999999998754421 11222111000000000
Q ss_pred ---------HhhcCCCCC--ccCCccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC---C---CCH-HHHHHHHHHHHHH
Q 002090 715 ---------MLHMKSYDS--PADGKSSFQ-VEMSEIRSIVTATTSRSLVLIDEICR---G---TET-AKGTCIAGSIIET 775 (968)
Q Consensus 715 ---------~~~~~~~d~--~~~~~s~fs-~~~~~~~~il~~a~~~~LlLlDEp~~---G---lD~-~~~~~i~~~ll~~ 775 (968)
...+-.... +.......+ .++++....++.+.+|++||+|||++ + +|. .....+...+.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~l 182 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 182 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 000000001 111112222 34455555555688999999999999 4 343 3334453444333
Q ss_pred HHhcCcEEEEeccCh
Q 002090 776 LDNIGCLGIVSTHLH 790 (968)
Q Consensus 776 l~~~g~~vl~~TH~~ 790 (968)
.++.|++||++||+.
T Consensus 183 a~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 183 AKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHCCEEEEEEECC
T ss_pred HHHhCCeEEEEEecC
Confidence 345699999999985
No 88
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.06 E-value=5.8e-12 Score=144.06 Aligned_cols=121 Identities=15% Similarity=0.005 Sum_probs=77.2
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhc-----------CceeccCcC--Cc------------chHHHHHhhcCCCCCc
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGIC-----------GLMVPAESA--SI------------PYFDAIMLHMKSYDSP 724 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~-----------g~~vp~~~~--~~------------~~~~~i~~~~~~~d~~ 724 (968)
+++|+||||||||||+|+|+|+...... ..++++... .+ ..++.++..++..+..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~ 150 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD 150 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccC
Confidence 9999999999999999999997522110 023443321 00 1134556666554321
Q ss_pred cCCccchHHH--HHHHHHHHHh-C----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH----Hhc----CcEE
Q 002090 725 ADGKSSFQVE--MSEIRSIVTA-T----------TSRSLVLIDEICRGTETAKGTCIAGSIIETL----DNI----GCLG 783 (968)
Q Consensus 725 ~~~~s~fs~~--~~~~~~il~~-a----------~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l----~~~----g~~v 783 (968)
... .+|.+ |++...+++. + ++|+++++||||+|+|+.....+...+.+.. .+. ..++
T Consensus 151 -~~~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~ii 228 (413)
T 1tq4_A 151 -FFI-IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF 228 (413)
T ss_dssp -EEE-EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEE
T ss_pred -CeE-EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 111 15666 7765554443 3 3899999999999999988888755555443 233 3678
Q ss_pred EEeccChhh
Q 002090 784 IVSTHLHGI 792 (968)
Q Consensus 784 l~~TH~~el 792 (968)
+++||+.+.
T Consensus 229 liSsh~l~~ 237 (413)
T 1tq4_A 229 LLSNKNVCH 237 (413)
T ss_dssp ECCTTCTTS
T ss_pred EEecCcCCc
Confidence 899997654
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.00 E-value=1.2e-10 Score=118.09 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=66.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhc--CceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGIC--GLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~--g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a 745 (968)
|+.++|+||||+|||||++++++.....+. ..++. ...++..+.. .++.+.. ..++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~--------~~~~~~~~~~---------~~~~~~~--~~~~~~~ 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD--------TKDLIFRLKH---------LMDEGKD--TKFLKTV 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE--------HHHHHHHHHH---------HHHHTCC--SHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE--------HHHHHHHHHH---------HhcCchH--HHHHHHh
Confidence 578999999999999999999987642211 11211 1111111100 0000000 0223334
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 746 TSRSLVLIDEICR-GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 746 ~~~~LlLlDEp~~-GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+|++|+||||++ ++|+.....+ ..+++...+.|.++|++||+..
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l-~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELI-SYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHH-HHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHH-HHHHHHHHHcCCCEEEEcCCCh
Confidence 5899999999995 8999666555 6777777777899999999753
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.99 E-value=4.6e-10 Score=133.32 Aligned_cols=121 Identities=13% Similarity=0.038 Sum_probs=83.1
Q ss_pred eeceEEEEEecCCCCcchHHHHHHhHHHhhh--cCceeccCcCCcchHHHHHhhcC----------CCCCccCCccchHH
Q 002090 666 DMQSLFLLTGPNGGGKSSLLRSICAASLLGI--CGLMVPAESASIPYFDAIMLHMK----------SYDSPADGKSSFQV 733 (968)
Q Consensus 666 ~lg~~~~I~GpNGsGKSTllk~i~gl~~la~--~g~~vp~~~~~~~~~~~i~~~~~----------~~d~~~~~~s~fs~ 733 (968)
.-|++++|+||||+|||||++++++...... ...+++++... ..... ..+++ ...........+|.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~-~l~~~-~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA-QLLRN-AYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH-HHHHH-HHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-HHHHH-HHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 3389999999999999999999999865421 11234444311 11111 11122 21222334556788
Q ss_pred HHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 734 EMSEIRSIVTA-TTSRSLVLIDEICRGTETA-----KGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 734 ~~~~~~~il~~-a~~~~LlLlDEp~~GlD~~-----~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
++++...+... +.+|++||+| |++|+|+. ....+ ..+++.+++.|+++|++||+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i-~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV-IGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH-HHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH-HHHHHHHHhCCCEEEEEECcc
Confidence 88876555444 7899999999 99999996 55555 777888888899999999997
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.98 E-value=1.6e-10 Score=124.62 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=69.6
Q ss_pred eeeeeEee--ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchH-HHHHhhcCCCCCccCCccchHHHHH
Q 002090 660 AVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF-DAIMLHMKSYDSPADGKSSFQVEMS 736 (968)
Q Consensus 660 ~v~~~i~l--g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~-~~i~~~~~~~d~~~~~~s~fs~~~~ 736 (968)
.+++++++ |++++|+|||||||||++++++|+......|.....+.. +.++ ......+ ....+.....+|..
T Consensus 15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~~v-~q~~~gl~~~~l~~--- 89 (261)
T 2eyu_A 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKSIV-NQREVGEDTKSFAD--- 89 (261)
T ss_dssp THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSSEE-EEEEBTTTBSCHHH---
T ss_pred HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcceee-eHHHhCCCHHHHHH---
Confidence 35666666 899999999999999999999998754323432211100 0000 0000000 00000001123311
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 737 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 737 ~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.++..+ +.+|+++|+|||+ |+.... .+++.. +.|.+++++||+.+....++
T Consensus 90 ~la~aL--~~~p~illlDEp~---D~~~~~----~~l~~~-~~g~~vl~t~H~~~~~~~~d 140 (261)
T 2eyu_A 90 ALRAAL--REDPDVIFVGEMR---DLETVE----TALRAA-ETGHLVFGTLHTNTAIDTIH 140 (261)
T ss_dssp HHHHHH--HHCCSEEEESCCC---SHHHHH----HHHHHH-HTTCEEEEEECCSSHHHHHH
T ss_pred HHHHHH--hhCCCEEEeCCCC---CHHHHH----HHHHHH-ccCCEEEEEeCcchHHHHHH
Confidence 122222 4589999999999 886533 333433 46999999999987654433
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.93 E-value=1.6e-09 Score=128.68 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=81.2
Q ss_pred CCCceeeeeEee-----ceEEEEEecCCCCcchHHHH--HHhHHHhhhcCceeccCcC---------CcchH-HHHHh--
Q 002090 656 AEGSAVHNTVDM-----QSLFLLTGPNGGGKSSLLRS--ICAASLLGICGLMVPAESA---------SIPYF-DAIML-- 716 (968)
Q Consensus 656 ~~~~~v~~~i~l-----g~~~~I~GpNGsGKSTllk~--i~gl~~la~~g~~vp~~~~---------~~~~~-~~i~~-- 716 (968)
.++..+++++++ |++++|+||||||||||+++ ++|+........++-.+.. .+++. +....
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 345678888887 68999999999999999999 6787643322223321110 11111 11110
Q ss_pred ---hcCCCC--CccCCccchHHHHHHHHHHHHh--CCCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHhcCcEEE
Q 002090 717 ---HMKSYD--SPADGKSSFQVEMSEIRSIVTA--TTSRSLVLIDEICR-----GTETAKGTCIAGSIIETLDNIGCLGI 784 (968)
Q Consensus 717 ---~~~~~d--~~~~~~s~fs~~~~~~~~il~~--a~~~~LlLlDEp~~-----GlD~~~~~~i~~~ll~~l~~~g~~vl 784 (968)
.+...+ ........+..+. .+..+... ..+|++|+||||++ ++|+..+..+ ..+++.+++.|+|+|
T Consensus 102 ~l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l-~~ll~~l~~~g~tvl 179 (525)
T 1tf7_A 102 KLFILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRREL-FRLVARLKQIGATTV 179 (525)
T ss_dssp SEEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHH-HHHHHHHHHHTCEEE
T ss_pred cEEEEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHH-HHHHHHHHHCCCEEE
Confidence 011110 0011112222221 12222222 35899999999997 4588776666 777888888899999
Q ss_pred EeccChhhh
Q 002090 785 VSTHLHGIF 793 (968)
Q Consensus 785 ~~TH~~el~ 793 (968)
++||+.+.+
T Consensus 180 ~itH~~~~~ 188 (525)
T 1tf7_A 180 MTTERIEEY 188 (525)
T ss_dssp EEEECSSSS
T ss_pred EEecCCCCc
Confidence 999998763
No 93
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.91 E-value=1.5e-10 Score=129.24 Aligned_cols=117 Identities=9% Similarity=0.054 Sum_probs=71.4
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchH-HHH
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ-VEM 735 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs-~~~ 735 (968)
+++++++ |++++|+||||||||||+++++|+... ..|...-.....+. ... .....+-+. +++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~----------~~~-~~~~i~~~~ggg~ 227 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIV----------FKH-HKNYTQLFFGGNI 227 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCC----------CSS-CSSEEEEECBTTB
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccc----------ccc-chhEEEEEeCCCh
Confidence 6777777 899999999999999999999887532 22221111111000 000 000011110 456
Q ss_pred HHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 736 SEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 736 ~~~~~il~~-a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
++...+.+. ..+|+++|+|||++. .+ ..+++.+...+.++|++||..+..+.++
T Consensus 228 ~~r~~la~aL~~~p~ilildE~~~~-------e~-~~~l~~~~~g~~tvi~t~H~~~~~~~~d 282 (330)
T 2pt7_A 228 TSADCLKSCLRMRPDRIILGELRSS-------EA-YDFYNVLCSGHKGTLTTLHAGSSEEAFI 282 (330)
T ss_dssp CHHHHHHHHTTSCCSEEEECCCCST-------HH-HHHHHHHHTTCCCEEEEEECSSHHHHHH
T ss_pred hHHHHHHHHhhhCCCEEEEcCCChH-------HH-HHHHHHHhcCCCEEEEEEcccHHHHHhh
Confidence 665554444 789999999999981 12 3455666554457999999987655444
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.90 E-value=3.7e-09 Score=110.10 Aligned_cols=121 Identities=19% Similarity=0.112 Sum_probs=68.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcC-CcchHHHHHhhcCCCC-----Ccc-CCccchHHHHHH-HH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA-SIPYFDAIMLHMKSYD-----SPA-DGKSSFQVEMSE-IR 739 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~-~~~~~~~i~~~~~~~d-----~~~-~~~s~fs~~~~~-~~ 739 (968)
|++++|+||||+|||||++++++ .......|+..+.. ....+..+...++... .+. ...+... ++.+ +.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 96 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFK-EQRRVIG 96 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTS-HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHH-HHHHHHH
Confidence 78999999999999999999998 22222234443331 1122223333332210 000 0111111 2222 33
Q ss_pred HHHHhCC-CCcEEEEeCCCCCCCHHHH--------HHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 740 SIVTATT-SRSLVLIDEICRGTETAKG--------TCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 740 ~il~~a~-~~~LlLlDEp~~GlD~~~~--------~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+.+.+. +|++|++|||++++|+... ..+...+.+..++.|+++|+++|...
T Consensus 97 ~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 97 SLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 3333344 4999999999999997321 23333344444556999999999765
No 95
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.87 E-value=8.8e-10 Score=121.38 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=67.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh-------------------------h-cCceeccCcC-Ccch---HHHHHh-
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------------I-CGLMVPAESA-SIPY---FDAIML- 716 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la-------------------------~-~g~~vp~~~~-~~~~---~~~i~~- 716 (968)
|++++|+|||||||||+++.++|+.... + ...++++... ..+. .+.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 6899999999999999999999986210 0 1224555443 2221 122221
Q ss_pred h-cCCC----CCcc--CCccchHHHHHHHHHHHHh--CCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCcEEE
Q 002090 717 H-MKSY----DSPA--DGKSSFQVEMSEIRSIVTA--TTSRS--LVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGI 784 (968)
Q Consensus 717 ~-~~~~----d~~~--~~~s~fs~~~~~~~~il~~--a~~~~--LlLlDEp~~GlD~~~~~~i~~~ll~~l~-~~g~~vl 784 (968)
. -+.. |... ........++.+....++. +.+|+ +++|| ||+|+|+... ++.+. +.|.++|
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-------~~~~~~~~g~t~i 251 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------AREFNEVVGITGL 251 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-------HHHHHHHTCCCEE
T ss_pred HHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-------HHHHHHhcCCCEE
Confidence 1 1110 1000 1111233344433333332 67899 99999 9999999643 23344 4689999
Q ss_pred EeccChh
Q 002090 785 VSTHLHG 791 (968)
Q Consensus 785 ~~TH~~e 791 (968)
++||.-+
T Consensus 252 iiThlD~ 258 (302)
T 3b9q_A 252 ILTKLDG 258 (302)
T ss_dssp EEECCSS
T ss_pred EEeCCCC
Confidence 9999544
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.86 E-value=4.1e-09 Score=103.82 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=59.5
Q ss_pred eceEEEEEecCCCCcchHHHHHHhHHHhhhcC---ceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHH
Q 002090 667 MQSLFLLTGPNGGGKSSLLRSICAASLLGICG---LMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT 743 (968)
Q Consensus 667 lg~~~~I~GpNGsGKSTllk~i~gl~~la~~g---~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~ 743 (968)
-|+.++|+||||+|||||++++++.... .| .+++..... .. +
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~-----------------~~----------------~ 79 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMP-----------------LT----------------D 79 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSC-----------------CC----------------G
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhh-----------------HH----------------H
Confidence 3678999999999999999999997653 13 122221100 00 1
Q ss_pred hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE-EEEeccC
Q 002090 744 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL-GIVSTHL 789 (968)
Q Consensus 744 ~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~-vl~~TH~ 789 (968)
.+.++++++||||++ +++.....+ ..+++.+.+.|.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l-~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALL-FSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHH-HHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHH-HHHHHHHHHcCCcEEEEECCC
Confidence 135789999999998 555454444 6777777777777 8888884
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.86 E-value=4.1e-09 Score=118.54 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=72.5
Q ss_pred eceEEEEEecCCCCcchHHHHHHhHHHh--hh---cC--ceeccCcCC-cchHHHHHhhcCCC-----CCccCCccchHH
Q 002090 667 MQSLFLLTGPNGGGKSSLLRSICAASLL--GI---CG--LMVPAESAS-IPYFDAIMLHMKSY-----DSPADGKSSFQV 733 (968)
Q Consensus 667 lg~~~~I~GpNGsGKSTllk~i~gl~~l--a~---~g--~~vp~~~~~-~~~~~~i~~~~~~~-----d~~~~~~s~fs~ 733 (968)
-|+++.|+||||||||||++++++.... .. .| .|+-.+... ...+..++..++.. +++.......+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 3899999999999999999999998632 11 12 344333221 11122233333321 122111111134
Q ss_pred HHHHHHHHHHh-C-------CCCcEEEEeCCCCCCCHHH------------HHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 734 EMSEIRSIVTA-T-------TSRSLVLIDEICRGTETAK------------GTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 734 ~~~~~~~il~~-a-------~~~~LlLlDEp~~GlD~~~------------~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
++.++..++.. + .+|++||+|||++++|+.. ...+...+.+..++.|+++|+++|...
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 44444333322 2 6899999999999999852 133333444444456999999999764
No 98
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.84 E-value=6e-09 Score=110.23 Aligned_cols=127 Identities=12% Similarity=0.143 Sum_probs=68.1
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcC-CcchHHHHHhhcCCC-----CCccCCccch
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESA-SIPYFDAIMLHMKSY-----DSPADGKSSF 731 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~-~~~~~~~i~~~~~~~-----d~~~~~~s~f 731 (968)
+.-|++++|+||||+|||||++++++...+. ....|+..+.. ....+..+...++.. +++... ..+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ 99 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYA-RAF 99 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEE-ECC
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEE-ecC
Confidence 3447899999999999999999999864432 11223333221 111122334444432 111110 111
Q ss_pred H-HHHHHH-HHHHHh--CCCCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 732 Q-VEMSEI-RSIVTA--TTSRSLVLIDEICRGTETA-------K-----GTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 732 s-~~~~~~-~~il~~--a~~~~LlLlDEp~~GlD~~-------~-----~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
+ .+..++ ..+... ..+|++|++|||++.+|+. . ...++..+.+..++.|++||+++|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~ 176 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 176 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence 1 122221 112222 3689999999999999874 1 2334444555555679999999997654
No 99
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.83 E-value=2.5e-09 Score=120.38 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=64.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceecc-CcCCcchHH--HHHhhcCCCCCccCCccchHHHHHHHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA-ESASIPYFD--AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~-~~~~~~~~~--~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~ 744 (968)
+++++|+|||||||||||++++|.+.....+..+-. +...+..-. .++... ......-+|.. ....+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~----~~~~~~~~~~~-----~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQR----EVHRDTLGFSE-----ALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE----EBTTTBSCHHH-----HHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeee----eeccccCCHHH-----HHHHHh
Confidence 679999999999999999999998754433322211 111000000 000000 00011112322 112223
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
..+|+++|+|||+ |+.. +..+++ +.+.|.++|++||+.+.+...+
T Consensus 194 ~~~PdvillDEp~---d~e~----~~~~~~-~~~~G~~vl~t~H~~~~~~~~d 238 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLET----IRLALT-AAETGHLVFGTLHTTSAAKTID 238 (356)
T ss_dssp TSCCSEEEESCCC---SHHH----HHHHHH-HHHTTCEEEEEESCSSHHHHHH
T ss_pred hhCcCEEecCCCC---CHHH----HHHHHH-HHhcCCEEEEEEccChHHHHHH
Confidence 7899999999998 5533 222333 3456999999999988765543
No 100
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.82 E-value=2.5e-09 Score=120.22 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=67.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh--------------------------hcCceeccCcC-Ccch---HHHHHh-
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------------ICGLMVPAESA-SIPY---FDAIML- 716 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la--------------------------~~g~~vp~~~~-~~~~---~~~i~~- 716 (968)
|++++|+|||||||||+++.|+|+.... ....++++... ..+. .+.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 6899999999999999999999986210 01224555443 2221 122221
Q ss_pred hc-CCCCCc-c-CC----ccchHHHHHHHHHHHH--hCCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCcEEE
Q 002090 717 HM-KSYDSP-A-DG----KSSFQVEMSEIRSIVT--ATTSRS--LVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGI 784 (968)
Q Consensus 717 ~~-~~~d~~-~-~~----~s~fs~~~~~~~~il~--~a~~~~--LlLlDEp~~GlD~~~~~~i~~~ll~~l~-~~g~~vl 784 (968)
.. +....+ . .+ ......++.+....++ .+.+|+ +++|| ||+|+|+.... +.+. +.|.++|
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-------~~~~~~~g~t~i 308 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------REFNEVVGITGL 308 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTCCCEE
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-------HHHHHhcCCeEE
Confidence 00 110000 0 11 1122333433332222 368899 99999 99999996432 3344 4589999
Q ss_pred EeccChh
Q 002090 785 VSTHLHG 791 (968)
Q Consensus 785 ~~TH~~e 791 (968)
++||.-+
T Consensus 309 iiThlD~ 315 (359)
T 2og2_A 309 ILTKLDG 315 (359)
T ss_dssp EEESCTT
T ss_pred EEecCcc
Confidence 9999543
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.81 E-value=7.4e-10 Score=118.28 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=23.6
Q ss_pred CCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 656 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 656 ~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+++.++++++| |.+++|+|||||||||++|+++++.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567789999999 7899999999999999999999975
No 102
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.80 E-value=1.2e-10 Score=122.26 Aligned_cols=130 Identities=9% Similarity=-0.064 Sum_probs=71.2
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCcee---------cc--Cc---CCcchHHHHHhhcC--
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV---------PA--ES---ASIPYFDAIMLHMK-- 719 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~v---------p~--~~---~~~~~~~~i~~~~~-- 719 (968)
.-+++++| |++++|+||||||||||+|+|+|+. . |.+. |. .. ...+.-...|..+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 34677777 8999999999999999999999976 2 2111 00 00 00111111111100
Q ss_pred --------CCCCc------------c-----CCccchHHHHHHHHHH-----HH-hCCCCcEEEEeCCCCCCCHHHHHHH
Q 002090 720 --------SYDSP------------A-----DGKSSFQVEMSEIRSI-----VT-ATTSRSLVLIDEICRGTETAKGTCI 768 (968)
Q Consensus 720 --------~~d~~------------~-----~~~s~fs~~~~~~~~i-----l~-~a~~~~LlLlDEp~~GlD~~~~~~i 768 (968)
...+. . .....+++++++...+ +. .+.+|++++||||++++|......+
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i 166 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQI 166 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHH
Confidence 00000 0 0012457777776544 11 1567889999999999998666666
Q ss_pred HHHHHHHHHh------cCcEEEEeccChhhh
Q 002090 769 AGSIIETLDN------IGCLGIVSTHLHGIF 793 (968)
Q Consensus 769 ~~~ll~~l~~------~g~~vl~~TH~~el~ 793 (968)
...+.+...+ .++..|+++|+.+.+
T Consensus 167 ~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea 197 (218)
T 1z6g_A 167 QKRMEQLNIELHEANLLNFNLSIINDDLTLT 197 (218)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEECSSHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCEEEECCCHHHH
Confidence 4444443332 467788999987654
No 103
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.78 E-value=1.1e-09 Score=122.93 Aligned_cols=139 Identities=11% Similarity=0.118 Sum_probs=83.5
Q ss_pred cCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc----------------------------eec
Q 002090 655 AAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL----------------------------MVP 702 (968)
Q Consensus 655 ~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~----------------------------~vp 702 (968)
+..+..+++++ | |++++|+||||+|||||+++|+|+.... .|. +++
T Consensus 55 ~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~-~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~ 132 (347)
T 2obl_A 55 FILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD-IIVLALIGERGREVNEFLALLPQSTLSKCVLVVT 132 (347)
T ss_dssp ECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEE
T ss_pred cCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC-EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEE
Confidence 33355677887 7 8999999999999999999999985211 111 111
Q ss_pred cCcC-CcchHHH---------HHhhcCCCCC--ccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002090 703 AESA-SIPYFDA---------IMLHMKSYDS--PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 770 (968)
Q Consensus 703 ~~~~-~~~~~~~---------i~~~~~~~d~--~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~ 770 (968)
+... ....+.. .|...+ .+. +....+.||.++++++.+ +.+|++ ++|+||.....+ .
T Consensus 133 ~~~~~~~~r~~~~~~~~~~ae~~~~~~-~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~Gldp~~~~~l-~ 201 (347)
T 2obl_A 133 TSDRPALERMKAAFTATTIAEYFRDQG-KNVLLMMDSVTRYARAARDVGLA---SGEPDV------RGGFPPSVFSSL-P 201 (347)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTT-CEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BTTBCHHHHHHH-H
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------ccCCCHHHHHHH-H
Confidence 1100 0000111 111111 010 113467788888544444 566655 899999877777 6
Q ss_pred HHHHHHH--hcCc-----EEEEeccChhhhhcccccccccccee
Q 002090 771 SIIETLD--NIGC-----LGIVSTHLHGIFSLPLKIKNAAYKAM 807 (968)
Q Consensus 771 ~ll~~l~--~~g~-----~vl~~TH~~el~~~~~~~~~~~~~~~ 807 (968)
.+++.+. +.|. ||+++|||++ ..+++....+..+++
T Consensus 202 ~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 202 KLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHI 244 (347)
T ss_dssp HHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEE
T ss_pred HHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEE
Confidence 6777775 3577 8999999988 444554444444444
No 104
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.77 E-value=1.1e-08 Score=100.60 Aligned_cols=73 Identities=11% Similarity=-0.040 Sum_probs=57.0
Q ss_pred ccCCccchHHHHHHHHHHH-------HhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcc
Q 002090 724 PADGKSSFQVEMSEIRSIV-------TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 724 ~~~~~s~fs~~~~~~~~il-------~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~ 796 (968)
.....+++|+|+++...++ +.+.+|+++||||||+|+|+.....+ ..++..+.+.|.++|++||+.++...+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~~tiiivsH~~~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLKKIPQVILVSHDEELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHH-HHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHH-HHHHHHHHccCCEEEEEEChHHHHHhC
Confidence 3456778999999977653 23688999999999999999887777 555555666689999999998765544
Q ss_pred c
Q 002090 797 L 797 (968)
Q Consensus 797 ~ 797 (968)
+
T Consensus 130 d 130 (148)
T 1f2t_B 130 D 130 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 105
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.74 E-value=1.2e-09 Score=118.54 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=30.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 748 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
..|++||||+.|+|+.+ ..+++.+.+. .++|++.|..+..
T Consensus 114 ~~lllldep~~gL~~lD-----~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 114 CCLYFISPTGHSLRPLD-----LEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp EEEEEECCCSSSCCHHH-----HHHHHHHHTT-SEEEEEETTGGGS
T ss_pred eeeEEEecCCCcCCHHH-----HHHHHHHHhc-CcEEEEEeccccC
Confidence 35999999999999987 4556667666 7888887766543
No 106
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.74 E-value=7e-10 Score=122.74 Aligned_cols=116 Identities=9% Similarity=0.000 Sum_probs=70.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh---hcCceeccCcCCcch----------------------HHHHHhhcCCCC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG---ICGLMVPAESASIPY----------------------FDAIMLHMKSYD 722 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la---~~g~~vp~~~~~~~~----------------------~~~i~~~~~~~d 722 (968)
|++++|+||||||||||+|+|+|+.... ....+++++....+. +..++..++ ..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~ 168 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG 168 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC
Confidence 4689999999999999999999987542 112356665433322 112222232 11
Q ss_pred CccCCccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 723 SPADGKSSFQVEMSEIRSIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 723 ~~~~~~s~fs~~~~~~~~il-~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
........||.++++...+. +.+.+|++||+|||+...|+.. . .+.+.--.+|+++|+.++.
T Consensus 169 ~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~--------~l~~~~D~~I~V~a~~~~~ 231 (312)
T 3aez_A 169 SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-L--------MVSDLFDFSLYVDARIEDI 231 (312)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-C--------CGGGGCSEEEEEEECHHHH
T ss_pred cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-H--------HHHHhcCcEEEEECCHHHH
Confidence 11223456677776654332 2368999999999999998521 0 1222223457788877663
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.74 E-value=1.1e-09 Score=112.44 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=24.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
|++++|+||||||||||++.|+|+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 57899999999999999999999875
No 108
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.68 E-value=8.4e-11 Score=122.28 Aligned_cols=121 Identities=10% Similarity=-0.015 Sum_probs=68.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCc-----ch------------------HHHHHhhcCCCCCc
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI-----PY------------------FDAIMLHMKSYDSP 724 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~-----~~------------------~~~i~~~~~~~d~~ 724 (968)
|++++|+|||||||||++|+++|+.-. + ..+++++.... +. +..++..++..+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~-~-i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE-R-VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV 83 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG-G-EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC-C-eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence 578999999999999999999997531 1 22444433211 11 11122222222222
Q ss_pred cCCccchHHHHHHH----HHHH-HhCCCCcEEEEeCCCCC-------CCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 725 ADGKSSFQVEMSEI----RSIV-TATTSRSLVLIDEICRG-------TETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 725 ~~~~s~fs~~~~~~----~~il-~~a~~~~LlLlDEp~~G-------lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
......++.+++.. ..+. ..+.++.++++|||+++ +|+.....+...+.+...+.|.++++++|+.
T Consensus 84 ~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 84 EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 22223333332210 0000 00234445556899999 8987777776666666666788988899964
No 109
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.67 E-value=6.2e-09 Score=120.35 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=88.6
Q ss_pred ccccccCCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh----------------------------hhc
Q 002090 650 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------------GIC 697 (968)
Q Consensus 650 ~~~~~~~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l----------------------------a~~ 697 (968)
++...+..+..+++++ | |++++|+||||||||||+++|+|+... .+.
T Consensus 136 ~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~ 214 (438)
T 2dpy_A 136 PIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARS 214 (438)
T ss_dssp CCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTE
T ss_pred ccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCce
Confidence 3334444356788888 7 899999999999999999999998510 111
Q ss_pred CceeccCc-CCcchH---HH------HHhhcCCC-CCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHH
Q 002090 698 GLMVPAES-ASIPYF---DA------IMLHMKSY-DSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGT 766 (968)
Q Consensus 698 g~~vp~~~-~~~~~~---~~------i~~~~~~~-d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~ 766 (968)
..++++.. ...+.. +. .+...+.. ..+....+.||.++++++.+ +.+|++ ++|+|+....
T Consensus 215 i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~~~ 285 (438)
T 2dpy_A 215 VVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSVFA 285 (438)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHHHH
Confidence 23555532 111111 11 11111100 01123357788888555444 677776 9999998777
Q ss_pred HHHHHHHHHHHh---c-Cc-----EEEEeccChhhhhcccccccccccee
Q 002090 767 CIAGSIIETLDN---I-GC-----LGIVSTHLHGIFSLPLKIKNAAYKAM 807 (968)
Q Consensus 767 ~i~~~ll~~l~~---~-g~-----~vl~~TH~~el~~~~~~~~~~~~~~~ 807 (968)
.+ ..+++.+.+ . |. |++++|||++ ...++....+..+++
T Consensus 286 ~l-~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 286 KL-PALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHI 333 (438)
T ss_dssp HH-HHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEE
T ss_pred HH-HHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEE
Confidence 77 556666654 2 64 8999999987 444444444444443
No 110
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.65 E-value=6.6e-10 Score=122.06 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=76.8
Q ss_pred ceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCc---------c-------hHHHHHhhc
Q 002090 659 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI---------P-------YFDAIMLHM 718 (968)
Q Consensus 659 ~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~---------~-------~~~~i~~~~ 718 (968)
..+++++++ |++++|+||||||||||+++|+|+. -+++-.++|+....+ . .+...+..+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~ 191 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY 191 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH
Confidence 468888888 8999999999999999999999987 333333555543211 0 011222221
Q ss_pred CCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 719 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 719 ~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
..+-+. ...+|+|++|+ +.+.+.+|++|| |++||+.....+. . .||+.+....+++
T Consensus 192 -L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~-~--------------ltH~~~~~~~aD~ 247 (305)
T 2v9p_A 192 -LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYL-Y--------------LHSRVQTFRFEQP 247 (305)
T ss_dssp -TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGG-G--------------GTTTEEEEECCCC
T ss_pred -hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHH-H--------------HhCCHHHHHhCCE
Confidence 111122 46789999988 333478999999 9999997766552 1 2898776555554
Q ss_pred c
Q 002090 799 I 799 (968)
Q Consensus 799 ~ 799 (968)
.
T Consensus 248 i 248 (305)
T 2v9p_A 248 C 248 (305)
T ss_dssp C
T ss_pred E
Confidence 3
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.61 E-value=1.7e-08 Score=105.87 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=63.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh-hhcCc-ee----ccC--c---CCcchHHHHHhhcCC----CCCccCCccchH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL-GICGL-MV----PAE--S---ASIPYFDAIMLHMKS----YDSPADGKSSFQ 732 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l-a~~g~-~v----p~~--~---~~~~~~~~i~~~~~~----~d~~~~~~s~fs 732 (968)
|++++|+||||||||||+|+++|.... ...|. .+ |.. . ..++.-...|..+.. .+++......+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg 95 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG 95 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCC
Confidence 678999999999999999999998642 11111 11 110 0 111222233433322 122211100011
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 733 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 733 ~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
..... +...+..++++||| +|+.....+... +. .+.+|+++||+++.+.
T Consensus 96 ~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~----l~-~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 96 TSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQK----MP-HARSIFILPPSKIELD 144 (219)
T ss_dssp EEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHH----CT-TCEEEEEECSSHHHHH
T ss_pred CCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHH----cc-CCEEEEEECCCHHHHH
Confidence 01112 22234568999999 999776666332 22 5899999999988754
No 112
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.50 E-value=2e-07 Score=105.60 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=67.7
Q ss_pred eeeeEee--ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcC-CCC-CccCCccchHHHHH
Q 002090 661 VHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK-SYD-SPADGKSSFQVEMS 736 (968)
Q Consensus 661 v~~~i~l--g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~-~~d-~~~~~~s~fs~~~~ 736 (968)
+++++++ |++++|+|||||||||++++++++......|..+-.+.. +.+. .-..++ ..+ .+......|+..
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~~--~~~~~~~v~Q~~~g~~~~~~~~~-- 201 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYV--FKHKKSIVNQREVGEDTKSFADA-- 201 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCSC--CCCSSSEEEEEEBTTTBSCSHHH--
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhhh--hccCceEEEeeecCCCHHHHHHH--
Confidence 4555555 789999999999999999999998654323432211100 0000 000000 000 000122345321
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 737 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 737 ~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
++. +...+|+++++|||+ |+... ..+++.. ..|.+++.++|+.+..+..+
T Consensus 202 -l~~--~L~~~pd~illdE~~---d~e~~----~~~l~~~-~~g~~vi~t~H~~~~~~~~~ 251 (372)
T 2ewv_A 202 -LRA--ALREDPDVIFVGEMR---DLETV----ETALRAA-ETGHLVFGTLHTNTAIDTIH 251 (372)
T ss_dssp -HHH--HTTSCCSEEEESCCC---SHHHH----HHHHHHH-TTTCEEEECCCCCSHHHHHH
T ss_pred -HHH--HhhhCcCEEEECCCC---CHHHH----HHHHHHH-hcCCEEEEEECcchHHHHHH
Confidence 111 225689999999999 66442 2334433 56899999999876544433
No 113
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.48 E-value=3.2e-07 Score=113.62 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=71.6
Q ss_pred HHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 714 IMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 714 i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~--~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
.+..+|+.. .+.+...++|+|++|+..++.. +.+ |.++||||||+||||.+...+ ..+++.|++.|.|||++||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L-~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL-IATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHTTTCEEEEECCC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHH-HHHHHHHHhCCCEEEEEecC
Confidence 356778764 4688899999999998888777 454 589999999999999888888 77777788899999999999
Q ss_pred hhhhhccccccc
Q 002090 790 HGIFSLPLKIKN 801 (968)
Q Consensus 790 ~el~~~~~~~~~ 801 (968)
+++...+++...
T Consensus 566 l~~i~~ADrIi~ 577 (972)
T 2r6f_A 566 EDTMLAADYLID 577 (972)
T ss_dssp HHHHHSCSEEEE
T ss_pred HHHHHhCCEEEE
Confidence 998776655433
No 114
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.46 E-value=2.9e-07 Score=114.64 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=71.2
Q ss_pred HHHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEecc
Q 002090 713 AIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSRS--LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788 (968)
Q Consensus 713 ~i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~~--LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH 788 (968)
..+..+|... .+.+..+++|+|++|+..++++ +++|+ ++||||||+||||.+...+ ..+++.+++.|.|||++||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l-~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL-IKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHH-HHHHHHTTTTTCEEEEECC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHH-HHHHHHHHhcCCEEEEEeC
Confidence 4556678764 3678889999999998888776 55555 9999999999999998888 5666778888999999999
Q ss_pred Chhhhhcccccccc
Q 002090 789 LHGIFSLPLKIKNA 802 (968)
Q Consensus 789 ~~el~~~~~~~~~~ 802 (968)
|++++..+++...+
T Consensus 525 d~~~~~~aD~ii~l 538 (916)
T 3pih_A 525 DEEVIRNADHIIDI 538 (916)
T ss_dssp CHHHHHTCSEEEEE
T ss_pred CHHHHHhCCEEEEE
Confidence 99988766554333
No 115
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.44 E-value=3.2e-07 Score=104.68 Aligned_cols=126 Identities=15% Similarity=0.121 Sum_probs=67.0
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhh-hc------CceeccCcC-CcchHHHHHhhcCCCC-----CccCCccch
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-IC------GLMVPAESA-SIPYFDAIMLHMKSYD-----SPADGKSSF 731 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-~~------g~~vp~~~~-~~~~~~~i~~~~~~~d-----~~~~~~s~f 731 (968)
+.-|+++.|+||||+|||||+++++...... .. ..|+-.+.. ....+..+..+++... ++.......
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 3447899999999999999999876443321 11 123332221 1111223444555421 111111111
Q ss_pred HHHHHH-HHHHHHh--CCCCcEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 732 QVEMSE-IRSIVTA--TTSRSLVLIDEICRGTETAKG------------TCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 732 s~~~~~-~~~il~~--a~~~~LlLlDEp~~GlD~~~~------------~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
..+..+ +..+... ..+|++|++|||++.+++... ..++..+.+..++.|++||++||..
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 112222 2222221 358999999999999986322 3343444444455699999999964
No 116
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.41 E-value=5.9e-07 Score=110.89 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=70.9
Q ss_pred HHhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 714 IMLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 714 i~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~~--~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
.+..+|+.. .+.+..+++|+|++|+..++.. +.+| .++||||||+|||+.+...+ ..+++.|++.|.|||++||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L-~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL-LSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHTTTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH-HHHHHHHHHcCCEEEEEcCC
Confidence 455678764 3688889999999998887777 5666 59999999999999998888 67777788889999999999
Q ss_pred hhhhhcccccc
Q 002090 790 HGIFSLPLKIK 800 (968)
Q Consensus 790 ~el~~~~~~~~ 800 (968)
+++...+++..
T Consensus 441 l~~l~~aD~ii 451 (842)
T 2vf7_A 441 LDVIRRADWLV 451 (842)
T ss_dssp HHHHTTCSEEE
T ss_pred HHHHHhCCEEE
Confidence 99877655443
No 117
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.40 E-value=1.7e-07 Score=112.93 Aligned_cols=48 Identities=19% Similarity=0.039 Sum_probs=36.3
Q ss_pred CCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHh-cCcEEEEeccChhhh
Q 002090 746 TSRSLVLIDEI------CRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF 793 (968)
Q Consensus 746 ~~~~LlLlDEp------~~GlD~~~~~~i~~~ll~~l~~-~g~~vl~~TH~~el~ 793 (968)
..|+|+|+||| ++|+|+.....+...+.+++.+ .+.+++++||+.+++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 56999999999 9999997777775544444544 467889999998755
No 118
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.40 E-value=5.7e-07 Score=111.78 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=69.4
Q ss_pred HhhcCCCC-CccCCccchHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 715 MLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 715 ~~~~~~~d-~~~~~~s~fs~~~~~~~~il~~-a~~--~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
+..+|+.. .+.....++|+|++|+..++.. +.+ |.++||||||+||||.+...+ ..+++.|++.|.|||++||+.
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L-~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRL-IETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECCCH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHH-HHHHHHHHHcCCEEEEECCCH
Confidence 55667763 4678889999999998888776 555 589999999999999988888 677777888999999999999
Q ss_pred hhhhccccc
Q 002090 791 GIFSLPLKI 799 (968)
Q Consensus 791 el~~~~~~~ 799 (968)
++...+++.
T Consensus 584 ~~i~~ADrI 592 (993)
T 2ygr_A 584 DTIEHADWI 592 (993)
T ss_dssp HHHHTCSEE
T ss_pred HHHHhCCEE
Confidence 987765543
No 119
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.39 E-value=1.5e-06 Score=91.72 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=37.1
Q ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 746 TSRSLVLIDEICRGT--ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 746 ~~~~LlLlDEp~~Gl--D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
.+++++++|+|+... |+.....+...+.+.+++.|+++|+++|....
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 578999999999887 55455666677888878889999999997653
No 120
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.38 E-value=2.5e-07 Score=101.80 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=20.9
Q ss_pred CceeeeeEeeceEEEEEecCCCCcchHHHHHHhH
Q 002090 658 GSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 658 ~~~v~~~i~lg~~~~I~GpNGsGKSTllk~i~gl 691 (968)
++.++++++|. ++|+||||+|||||+++|.|.
T Consensus 10 ~~~~l~~~~~~--I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 10 RKSVKKGFEFT--LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --------CEE--EEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEcCCCEE--EEEECCCCCCHHHHHHHHhCC
Confidence 45677887774 499999999999999999886
No 121
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.36 E-value=1.9e-06 Score=94.50 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=66.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh--hcCceeccCcCCcchHHHH---HhhcCCCCCccCCccchHHHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG--ICGLMVPAESASIPYFDAI---MLHMKSYDSPADGKSSFQVEMSEIRSIV 742 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la--~~g~~vp~~~~~~~~~~~i---~~~~~~~d~~~~~~s~fs~~~~~~~~il 742 (968)
+++++|+||||+||||+++.+++..... +...++.++.......+.+ ...++...... ... .++...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~-----~~~--~~l~~al 177 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC-----YTK--EEFQQAK 177 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC-----SSH--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec-----CCH--HHHHHHH
Confidence 5789999999999999999999986532 1224555554333322222 22233221111 111 2234444
Q ss_pred HhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---hcCcEEEE-eccChhh
Q 002090 743 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIV-STHLHGI 792 (968)
Q Consensus 743 ~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~---~~g~~vl~-~TH~~el 792 (968)
+.+.+++++|+| |+|+|+.....+ ..+.+.+. ..+..+++ +||..+.
T Consensus 178 ~~~~~~dlvIiD--T~G~~~~~~~~~-~el~~~l~~~~~~~~~lVl~at~~~~~ 228 (296)
T 2px0_A 178 ELFSEYDHVFVD--TAGRNFKDPQYI-DELKETIPFESSIQSFLVLSATAKYED 228 (296)
T ss_dssp HHGGGSSEEEEE--CCCCCTTSHHHH-HHHHHHSCCCTTEEEEEEEETTBCHHH
T ss_pred HHhcCCCEEEEe--CCCCChhhHHHH-HHHHHHHhhcCCCeEEEEEECCCCHHH
Confidence 456889999999 888898654333 44444433 22334555 5897543
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.36 E-value=3.2e-07 Score=104.90 Aligned_cols=84 Identities=8% Similarity=-0.033 Sum_probs=46.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh-----ccccccccccceeEEEeeCCceeee
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-----LPLKIKNAAYKAMGTEYLDGQTVPT 819 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (968)
..+..+|++|+|+..+.+.+...+...|.+.+...|..++++|.+-+... +....+..+.+.-.....+|....-
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d~~~~~~~~~~~~~~PFavvgs~~~~~~~g~~vrg 253 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMRA 253 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-----CCSHHHHHTTC-CCBCCC--------CCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCchhHHHHHhhhcCCCCeEEECCCCeeeeCCcEEEE
Confidence 36789999999999999988888877777778888999998887543211 1112222222222222234555555
Q ss_pred eeeecCCCC
Q 002090 820 WKLVDGICR 828 (968)
Q Consensus 820 y~l~~G~~~ 828 (968)
.+..||.+.
T Consensus 254 R~ypWG~~e 262 (427)
T 2qag_B 254 RQYPWGTVQ 262 (427)
T ss_dssp ---CCCCCC
T ss_pred ecCCCceEE
Confidence 566788764
No 123
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.35 E-value=1.1e-06 Score=103.97 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=78.9
Q ss_pred CCccch-HHHHHHHHHHHHh-CCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccccccc
Q 002090 726 DGKSSF-QVEMSEIRSIVTA-TTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 801 (968)
Q Consensus 726 ~~~s~f-s~~~~~~~~il~~-a~~~--~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~~~~ 801 (968)
...+.+ |+|+++...++.. +.+| +++|||||++|+|+.....+ ..++..+.+ |.+||++||+++++..+++...
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i-~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~ 469 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAV-AEQLSRLAD-TRQVLVVTHLAQIAARAHHHYK 469 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHH-HHHHHHHHH-HSEEEEECCCHHHHHHSSEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHH-HHHHHHHhC-CCEEEEEecCHHHHHhCCEEEE
Confidence 445666 8999887665554 6788 99999999999999888877 555555666 8999999999998876443322
Q ss_pred cccceeEEEeeCCceeeeeeeecCCCCCcHHHHHHHHcC--CCHHHHHHHHHHHH
Q 002090 802 AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG--VPETIIQRAEDLYI 854 (968)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~A~~~g--lp~~vi~rA~~~~~ 854 (968)
+.. + ...|......+ .......--++|++++ +.+..++.|++++.
T Consensus 470 ~~~---~--~~~~~~~~~~~---~l~~~~~~~ei~~~~~g~~~~~~~~~a~~ll~ 516 (517)
T 4ad8_A 470 VEK---Q--VEDGRTVSHVR---LLTGDERLEEIARMLSGNTSEAALEHARELLA 516 (517)
T ss_dssp EEC---C--EETTEECCEEE---ECCSHHHHHHHHHHSSSSCCHHHHHHHHHHHC
T ss_pred Eec---c--ccCCceeeeee---eCCcchHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 211 1 12233222111 1112233457788874 57888888888763
No 124
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.34 E-value=3.4e-07 Score=100.80 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+|||||||||+++.++|+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5789999999999999999999986
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.32 E-value=1.4e-07 Score=106.84 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=68.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh---cCc-eec----cC-----cCC---cchH--HHHHhhcCCCCCccCCcc
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGL-MVP----AE-----SAS---IPYF--DAIMLHMKSYDSPADGKS 729 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~---~g~-~vp----~~-----~~~---~~~~--~~i~~~~~~~d~~~~~~s 729 (968)
++.++|+||||||||||+|+|+|+.-... .|. ++. .. ... +... +.........+++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~t~~~nl~~~~~ 249 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHSHKIAFIDT 249 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHHHHCSSEEEESS
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHhccCCEEEEeC
Confidence 68899999999999999999999863321 021 111 00 000 1111 001111222333322111
Q ss_pred ch--------HHHHHHHHHHHHh--CCCCcEEEEeC---CC------CCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 730 SF--------QVEMSEIRSIVTA--TTSRSLVLIDE---IC------RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 730 ~f--------s~~~~~~~~il~~--a~~~~LlLlDE---p~------~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
.. +.+.++...+.+. ..+|+++|||| |+ .++|+..+..++..+.+.+.+.+.++|++||.-
T Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 250 DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 11 1111111222222 36899999999 65 588998899998777776666789999999864
Q ss_pred hhhh
Q 002090 791 GIFS 794 (968)
Q Consensus 791 el~~ 794 (968)
+...
T Consensus 330 ~~~r 333 (365)
T 1lw7_A 330 YLDR 333 (365)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 126
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.29 E-value=1.8e-07 Score=107.23 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=28.5
Q ss_pred CCceeeeeEeeceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 657 EGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 657 ~~~~v~~~i~lg~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
+++.++++++|. ++|+||||+|||||+++++|...
T Consensus 22 ~~~~vl~~vsf~--I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 22 YRKSVKRGFEFT--LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TTTTCC-CCCEE--EEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCEEEecCCCEE--EEEECCCCCcHHHHHHHHhCCCC
Confidence 346788888875 49999999999999999988753
No 127
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=1.3e-06 Score=97.81 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=31.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
..+++++|+|||++ +|+....++ ..+++.. ..++++|++||+.+.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L-~~~le~~-~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAAL-RRTMEKY-SKNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHH-HHHHHHS-TTTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHH-HHHHHhh-cCCCEEEEEeCCHHH
Confidence 34789999999999 999765555 3333333 246899999998653
No 128
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.12 E-value=6.4e-06 Score=82.89 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=53.4
Q ss_pred CCccchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 726 DGKSSFQVEMSEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 726 ~~~s~fs~~~~~~~~il~~-----a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
...+.+|+|++++..++.. ..+|+++|||||++|||+.....+.. +++.+.+ +.++|++||+..+...+++
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~-~~~~ivith~~~~~~~ad~ 135 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK-ESQFIVITLRDVMMANADK 135 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSEEEEECSCHHHHTTCSE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc-CCEEEEEEecHHHHHhCCE
Confidence 4456789999997766544 25679999999999999988888754 4555544 4689999999877665543
No 129
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.11 E-value=1.1e-05 Score=90.55 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=69.5
Q ss_pred eEeeceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCC-CCcc-CCccchHHHHHHHHH
Q 002090 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPA-DGKSSFQVEMSEIRS 740 (968)
Q Consensus 664 ~i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~-~~~s~fs~~~~~~~~ 740 (968)
++.-|+++.|.||||+|||||+.+++...... ....|+..+...-+ ....+++.. +++. ....+ ..+..++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~---~~a~~lG~~~~~l~i~~~~~-~e~~l~~~~ 132 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP---EYAKKLGVDTDSLLVSQPDT-GEQALEIAD 132 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHTTCCGGGCEEECCSS-HHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH---HHHHHcCCCHHHeEEecCCC-HHHHHHHHH
Confidence 34457899999999999999999998665432 22334544432211 123344432 1111 01111 112222333
Q ss_pred HHHhCCCCcEEEEeCCCCCCC----------H---HHH---HHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 741 IVTATTSRSLVLIDEICRGTE----------T---AKG---TCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 741 il~~a~~~~LlLlDEp~~GlD----------~---~~~---~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+....++++|++||+++.+. + ... ..+...+...+++.|+++|+++|...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 233345799999999999883 2 111 12223344444677999999999654
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.94 E-value=1.1e-05 Score=89.56 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+|||||||||+++.|+|+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999986
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.93 E-value=3.9e-06 Score=89.26 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCCcchHHHHHH---hHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSIC---AAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~---gl~ 692 (968)
+++++|+|||||||||++|.|+ |+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4789999999999999999999 763
No 132
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.91 E-value=9.4e-07 Score=87.71 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.7
Q ss_pred CceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 658 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 658 ~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
++.++++++| |++++|+||||||||||+|+|+|+.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3467777777 7999999999999999999999985
No 133
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.90 E-value=1.3e-05 Score=92.89 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+||||||||||+++|+|+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 6899999999999999999999986
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.82 E-value=4.5e-05 Score=86.01 Aligned_cols=121 Identities=11% Similarity=0.012 Sum_probs=69.1
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhh--cCceeccCcC--CcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhC
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGI--CGLMVPAESA--SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~--~g~~vp~~~~--~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a 745 (968)
.++|+||+|+||||+++.++....... .-.++.+... ....+..++..++.... ..+ .....-...+...+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~-~~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRG-LSRDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSC-CCHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCC-CCHHHHHHHHHHHHhhc
Confidence 689999999999999999987643221 1122332221 12334455555543211 111 11222223344455556
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh---cCcEEEEeccChhhhh
Q 002090 746 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVSTHLHGIFS 794 (968)
Q Consensus 746 ~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~---~g~~vl~~TH~~el~~ 794 (968)
.+|.+|+|||+... |+.....+ ..+++.+.. .+..+|++||+.++..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L-~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTF-IRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHH-HHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred CCeEEEEEECcccc-chHHHHHH-HHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 77899999999876 65443333 333333333 5788999999886544
No 135
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.81 E-value=0.00013 Score=81.75 Aligned_cols=123 Identities=13% Similarity=0.113 Sum_probs=67.4
Q ss_pred eEeeceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCC-CCccCCccchHHHHHHHHHH
Q 002090 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI 741 (968)
Q Consensus 664 ~i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~~~~s~fs~~~~~~~~i 741 (968)
++.-|+++.|.||||+|||||+.+++...... ....|+..+...-+. ...+++.. +++......-..+...+...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 34458999999999999999999998875432 112355443322211 33445442 11111111111122222222
Q ss_pred HHhCCCCcEEEEeCCCCCCC-H-H-----------HHHHH---HHHHHHHHHhcCcEEEEeccC
Q 002090 742 VTATTSRSLVLIDEICRGTE-T-A-----------KGTCI---AGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~GlD-~-~-----------~~~~i---~~~ll~~l~~~g~~vl~~TH~ 789 (968)
+.....++++++|..+.=.. . . ....+ ...+....++.++++|++.|-
T Consensus 134 l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 22346899999999876654 1 1 11222 222333445579999999886
No 136
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.77 E-value=6.8e-05 Score=82.03 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=55.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc--eeccCcCCc---chHHHHHhhcCCCCCccCCccchHHHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGL--MVPAESASI---PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 742 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~--~vp~~~~~~---~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il 742 (968)
+++++|+|+||+||||+++.+++..... .+. ++-++.... ..+..+....+..- +..+...-..++. ..++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~-~~~~~~~~p~~l~--~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPV-LEVMDGESPESIR--RRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-EECCTTCCHHHHH--HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHhHHHHHHHhcccCCeEE-EEcCCCCCHHHHH--HHHH
Confidence 5789999999999999999999986432 121 222222111 11212222233211 1111111112222 2223
Q ss_pred Hh--CCCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 002090 743 TA--TTSRSLVLIDEI-CRGTETAKGTCIAGSIIETL 776 (968)
Q Consensus 743 ~~--a~~~~LlLlDEp-~~GlD~~~~~~i~~~ll~~l 776 (968)
+. ..++++||+||| +.|+|.....++ ..+.+.+
T Consensus 174 ~~~~~~~~D~viiDtpp~~~~d~~~~~~l-~~~~~~~ 209 (295)
T 1ls1_A 174 EKARLEARDLILVDTAGRLQIDEPLMGEL-ARLKEVL 209 (295)
T ss_dssp HHHHHHTCCEEEEECCCCSSCCHHHHHHH-HHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCccccHHHHHHH-HHHhhhc
Confidence 22 368999999999 889998554444 4444444
No 137
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.74 E-value=4.3e-05 Score=88.20 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=54.3
Q ss_pred CccchHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhcccc
Q 002090 727 GKSSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 798 (968)
Q Consensus 727 ~~s~fs~~~~~~~~il~~-a----~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~~ 798 (968)
..+.+|+|+++...++.. + .+|+++|||||+++||+.....++. ++..+.+.+.++|++||+.++...++.
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~ 405 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDA 405 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSE
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCE
Confidence 356789999987665544 3 6899999999999999988777744 445555457899999999877665443
No 138
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.69 E-value=1.1e-05 Score=91.03 Aligned_cols=30 Identities=17% Similarity=0.489 Sum_probs=27.2
Q ss_pred eeEee----ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 663 NTVDM----QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 663 ~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++++ |++++|+||||||||||+++++++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 67777 7999999999999999999998875
No 139
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.65 E-value=1.2e-05 Score=82.69 Aligned_cols=48 Identities=4% Similarity=-0.113 Sum_probs=32.7
Q ss_pred chHHHHHHH--HHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 002090 730 SFQVEMSEI--RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 777 (968)
Q Consensus 730 ~fs~~~~~~--~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~ 777 (968)
.++.++++. ..+.+.+.++.++++|||+|++|+.....+...+.+.+.
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 345565543 334444667778889999999999877777666655543
No 140
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.61 E-value=1.1e-05 Score=87.96 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
.+++|+||+|||||||.+.|+++.-
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999998864
No 141
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.60 E-value=8.6e-05 Score=83.94 Aligned_cols=68 Identities=9% Similarity=0.012 Sum_probs=48.7
Q ss_pred ccchHHHHHHHHHH-----H--HhCCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhccc
Q 002090 728 KSSFQVEMSEIRSI-----V--TATTS-RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 728 ~s~fs~~~~~~~~i-----l--~~a~~-~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~~~ 797 (968)
.+.+|+|+++...+ + ..+.+ |+++|||||++|+|+.....+...+ ..+. .+.+||++||+.++...++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~-~~~~vi~~th~~~~~~~~d 353 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF-RKVK-SIPQMIIITHHRELEDVAD 353 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHH-HHCC-SCSEEEEEESCGGGGGGCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHH-HHhc-cCCeEEEEEChHHHHhhCC
Confidence 34688888885432 1 12567 9999999999999998877775444 4343 3468999999987655443
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=2.9e-05 Score=87.21 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=66.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhc-C---ceeccCc--CCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGIC-G---LMVPAES--ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI 741 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~-g---~~vp~~~--~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~i 741 (968)
+..++|+||+|+||||+++.++....-... + .++.+.. .....+..++..++.... ..+ .+...-...+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~-~~~-~~~~~~~~~l~~~ 122 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP-FTG-LSIAELYRRLVKA 122 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC-SSS-CCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCC-CCHHHHHHHHHHH
Confidence 357899999999999999999886532210 1 1222111 111223344444432111 011 1122223344445
Q ss_pred HHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---hcCcEEEEeccChhhhh
Q 002090 742 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD---NIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~---~~g~~vl~~TH~~el~~ 794 (968)
+.....|.+|++||+....+..+ ..+...+++.+. ..+.++|++||+.++..
T Consensus 123 l~~~~~~~vlilDE~~~l~~~~~-~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 123 VRDYGSQVVIVLDEIDAFVKKYN-DDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp HHTCCSCEEEEEETHHHHHHSSC-STHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HhccCCeEEEEEcChhhhhccCc-CHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 55555689999999977553211 123355555553 34678899999886543
No 143
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.57 E-value=2.8e-05 Score=89.03 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=70.2
Q ss_pred eeEee----ceEEEEEecCCCCcchHHHHHHhHHH----------hhhcCceeccCc----------CCc-------chH
Q 002090 663 NTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------LGICGLMVPAES----------ASI-------PYF 711 (968)
Q Consensus 663 ~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~----------la~~g~~vp~~~----------~~~-------~~~ 711 (968)
+++++ +..++|+|+|||||||||+++++... ....| +++... ..+ ...
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhh
Confidence 55555 78999999999999999999998731 01111 111110 000 000
Q ss_pred HHHHhhcCCCCC------c-cCCccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 002090 712 DAIMLHMKSYDS------P-ADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 783 (968)
Q Consensus 712 ~~i~~~~~~~d~------~-~~~~s~fs~~~~~~~~il~-~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~v 783 (968)
...+.++...+. + ......++..++++..+.. .+..|.++++ +++|+... .....+.+.+.+.+.++
T Consensus 227 ~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~v 301 (416)
T 1udx_A 227 LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAV 301 (416)
T ss_dssp HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeE
Confidence 111111111110 0 2234457778888776643 3678999999 99999765 45566667776667776
Q ss_pred EEecc
Q 002090 784 IVSTH 788 (968)
Q Consensus 784 l~~TH 788 (968)
+++|.
T Consensus 302 i~iSA 306 (416)
T 1udx_A 302 LPVSA 306 (416)
T ss_dssp EECCT
T ss_pred EEEEC
Confidence 66554
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.52 E-value=0.00027 Score=82.07 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=65.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh--cCceeccCcCCcchHHHHHh-hcCC------------------------
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI--CGLMVPAESASIPYFDAIML-HMKS------------------------ 720 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~--~g~~vp~~~~~~~~~~~i~~-~~~~------------------------ 720 (968)
|++++|.|++|+|||||+..+++.....+ ...|+..+...-....++.. ..+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~ 282 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGS 282 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999998765432 12233222211111111110 0000
Q ss_pred ---CCCccCCccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCCHH--------HHHHHHHHHHHHHHhcCcEEEEecc
Q 002090 721 ---YDSPADGKSSFQV-EMSEIRSIVTATTSRSLVLIDEICRGTETA--------KGTCIAGSIIETLDNIGCLGIVSTH 788 (968)
Q Consensus 721 ---~d~~~~~~s~fs~-~~~~~~~il~~a~~~~LlLlDEp~~GlD~~--------~~~~i~~~ll~~l~~~g~~vl~~TH 788 (968)
..-.......++. +++.....+....++++|++|+++...++. .-..+...+....++.|++||+++|
T Consensus 283 l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 283 LSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp HHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 0000001112232 222222333334689999999999877431 2233333333333467999999999
Q ss_pred C
Q 002090 789 L 789 (968)
Q Consensus 789 ~ 789 (968)
-
T Consensus 363 l 363 (454)
T 2r6a_A 363 L 363 (454)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.52 E-value=3.3e-05 Score=79.12 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+|||||||||++++++++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 6899999999999999999999974
No 146
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.48 E-value=0.00012 Score=84.70 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=60.5
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhhcCc---eeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhC
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGL---MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~~g~---~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a 745 (968)
..++|.||+|+|||||++.|+....-...+. ++.+.. ....+...+... ....+....
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~----~~~~~~~~~~~~---------------~~~~~~~~~ 191 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMKEG---------------KLNEFREKY 191 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH----HHHHHHHHHHTT---------------CHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH----HHHHHHHHHHcc---------------cHHHHHHHh
Confidence 3589999999999999999988653221111 111111 011111111000 011122223
Q ss_pred C-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 746 T-SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 746 ~-~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
. ++++|++||+..-.+..........+++.+.+.|..+|++||..
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4 89999999998877643333333566666777889999999973
No 147
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.47 E-value=0.00026 Score=82.32 Aligned_cols=100 Identities=22% Similarity=0.360 Sum_probs=57.2
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCc-eeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh--CCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGL-MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA--TTS 747 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~-~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~--a~~ 747 (968)
++|+||+|+||||++|.|++.. +. ++.-. ..+..... ...+.+++..++.. ...
T Consensus 52 vLL~GppGtGKT~Laraia~~~-----~~~f~~is---------------~~~~~~~~---~g~~~~~~r~lf~~A~~~~ 108 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA-----NVPFFHIS---------------GSDFVELF---VGVGAARVRDLFAQAKAHA 108 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-----TCCEEEEE---------------GGGTTTCC---TTHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeeCC---------------HHHHHHHH---hcccHHHHHHHHHHHHhcC
Confidence 7899999999999999998853 21 11000 00000000 11122233333333 467
Q ss_pred CcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----hcCcEEEEeccChhhhh
Q 002090 748 RSLVLIDEICR----------GTETAKGTCIAGSIIETLD----NIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 748 ~~LlLlDEp~~----------GlD~~~~~~i~~~ll~~l~----~~g~~vl~~TH~~el~~ 794 (968)
|.+|+|||+.+ |.|+.. ......++..+. ..+..+|.+||..+..+
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~-~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDER-EQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHH-HHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred CCEEEEechhhhhhhcccccCcCcHHH-HHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999933 555533 333356666553 34788999999987654
No 148
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.47 E-value=0.00024 Score=79.41 Aligned_cols=124 Identities=11% Similarity=0.103 Sum_probs=67.8
Q ss_pred eceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcC-CcchHHHHHhhcCCCC-----CccCCccchH-
Q 002090 667 MQSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESA-SIPYFDAIMLHMKSYD-----SPADGKSSFQ- 732 (968)
Q Consensus 667 lg~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~-~~~~~~~i~~~~~~~d-----~~~~~~s~fs- 732 (968)
-|+++.|.||+|+|||||+.+++....+. ....|+..+.. ....+..+..+++... ++... ..+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~-~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYA-RAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEE-ECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEe-ecCCH
Confidence 37899999999999999999998864331 11234444432 1112223344444321 11100 0011
Q ss_pred HHHHH----HHHHHHhC-CCCcEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 733 VEMSE----IRSIVTAT-TSRSLVLIDEICRGTETA--------K----GTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 733 ~~~~~----~~~il~~a-~~~~LlLlDEp~~GlD~~--------~----~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.++.+ +...+... .++++|++|+++.-.... + -..+...+....++.+++||+++|...
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 11222 22233332 789999999999865432 1 123334444444567999999999654
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.44 E-value=0.00024 Score=78.05 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=47.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh-cCceeccCcCCcch---HHHHHhhcCCCCCccCCccchHHHH-HHH--HH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPY---FDAIMLHMKSYDSPADGKSSFQVEM-SEI--RS 740 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~-~g~~vp~~~~~~~~---~~~i~~~~~~~d~~~~~~s~fs~~~-~~~--~~ 740 (968)
+++++|+||||+||||+++.+++...... ...++.++...... +..+...++..- +. ..+.+. +++ ..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-~~----~~s~~~~~~v~~~a 178 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV-IS----HSEGADPAAVAFDA 178 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-EC----CSTTCCHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE-Ee----cCCccCHHHHHHHH
Confidence 57899999999999999999999864321 11223333222222 222333333321 11 111111 111 11
Q ss_pred HH-HhCCCCcEEEEeCCCC
Q 002090 741 IV-TATTSRSLVLIDEICR 758 (968)
Q Consensus 741 il-~~a~~~~LlLlDEp~~ 758 (968)
+. +...+++++|+|||+.
T Consensus 179 l~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHTTCSEEEEEECCC
T ss_pred HHHHHhcCCCEEEEECCCc
Confidence 22 2367899999999986
No 150
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.40 E-value=4.8e-05 Score=79.82 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=18.1
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHH-hHH
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSIC-AAS 692 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~-gl~ 692 (968)
....++|| |++++|+|||||||||++++++ ++.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34455666 7899999999999999999999 874
No 151
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.36 E-value=0.00014 Score=89.92 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=66.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh-----cCceeccCcCCcchHHHHHhhcCCC--CCcc------------CCc
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPAESASIPYFDAIMLHMKSY--DSPA------------DGK 728 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~-----~g~~vp~~~~~~~~~~~i~~~~~~~--d~~~------------~~~ 728 (968)
++.++|+|||||||||++.++.+...... +....|...........+...++.. .... ...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I 188 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTIL 188 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCE
Confidence 45789999999999999888855433222 1122343222222223333333221 1110 011
Q ss_pred cchHHHHHHHHHHH-HhCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCcEEEE-eccChhh
Q 002090 729 SSFQVEMSEIRSIV-TATTSRSLVLIDEIC-RGTETAKGTCIAGSIIETLDNIGCLGIV-STHLHGI 792 (968)
Q Consensus 729 s~fs~~~~~~~~il-~~a~~~~LlLlDEp~-~GlD~~~~~~i~~~ll~~l~~~g~~vl~-~TH~~el 792 (968)
...+.|+.....+. ..+.++++||+||+. +++|......+...+.... ....++++ +||+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~ 254 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEK 254 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHH
Confidence 12234544332222 127889999999998 4999865555544444322 23456666 6998654
No 152
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.36 E-value=7.4e-05 Score=77.15 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL 694 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l 694 (968)
|++++|+||||||||||+|+|+++...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999998653
No 153
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.36 E-value=0.0004 Score=79.67 Aligned_cols=116 Identities=15% Similarity=0.211 Sum_probs=61.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc---eeccCcCCcchHHHH---HhhcCCCCCccCCccchHHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGL---MVPAESASIPYFDAI---MLHMKSYDSPADGKSSFQVEMSEIRSI 741 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~---~vp~~~~~~~~~~~i---~~~~~~~d~~~~~~s~fs~~~~~~~~i 741 (968)
+.+++++||||+||||++..++.... ..|. ++.++.......+++ ....+..-........ .... ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d-p~~i--~~~a 171 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN-PIEI--AKKG 171 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC-HHHH--HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC-HHHH--HHHH
Confidence 36789999999999999999987653 2232 233332222222222 2223321110000000 1111 1223
Q ss_pred HHhC--CCCcEEEEeCCCC-C--CCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 742 VTAT--TSRSLVLIDEICR-G--TETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 742 l~~a--~~~~LlLlDEp~~-G--lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
+..+ .+++++|+|+|++ + .|+.....+ ..+.+.+......+++.+|.
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el-~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYGEETKLLEEM-KEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSCCTTHHHHHH-HHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHhcCCCEEEEECCCCccccCCHHHHHHH-HHHHHhhCCcceEEEEeCcc
Confidence 3443 4899999999995 4 677554444 44555554444455555553
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.36 E-value=5.9e-05 Score=76.46 Aligned_cols=25 Identities=36% Similarity=0.696 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++++|+|||||||||++|+++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999999875
No 155
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.27 E-value=0.00023 Score=79.96 Aligned_cols=56 Identities=7% Similarity=0.079 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHH-hC---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 730 SFQVEMSEIRSIVT-AT---------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 730 ~fs~~~~~~~~il~-~a---------~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
.+|.|+++...+.. .+ .+|+++|||||+++||+.....+...+ ..+ +.++|++||.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l-~~~---~qt~i~~th~ 330 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLA-ASV---PQAIVTGTEL 330 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHH-HHS---SEEEEEESSC
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHH-Hhc---CcEEEEEEec
Confidence 67899998665443 35 799999999999999998877774443 322 3789999994
No 156
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.26 E-value=9.1e-05 Score=76.01 Aligned_cols=25 Identities=36% Similarity=0.704 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+||||||||||+|+++++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5679999999999999999999875
No 157
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.23 E-value=0.00014 Score=84.55 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=29.4
Q ss_pred eeeeeEee---ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 660 AVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 660 ~v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
.++++++| .++++|+|||||||||||++|+|+..
T Consensus 18 ~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 18 NGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp TTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccccceEEEEccceEEEECCCCCcHHHHHHHHhcCCC
Confidence 35778877 36999999999999999999999863
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.19 E-value=0.00023 Score=83.28 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+..++|.|++||||||+++++.+-+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999987643
No 159
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.15 E-value=0.00015 Score=73.22 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|++++|+|||||||||++|++++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999999875
No 160
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.15 E-value=0.00035 Score=72.70 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=52.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhc-CceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGIC-GLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 746 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~-g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~ 746 (968)
+..++|+||+|+||||+++.++........ ..++.... +... . ..++....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~--------~~~~------~--------------~~~~~~~~ 103 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI--------HASI------S--------------TALLEGLE 103 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG--------GGGS------C--------------GGGGTTGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH--------HHHH------H--------------HHHHHhcc
Confidence 357899999999999999999876432210 11111110 0000 0 00111235
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE-EEEeccC
Q 002090 747 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL-GIVSTHL 789 (968)
Q Consensus 747 ~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~-vl~~TH~ 789 (968)
++.+|++||...-............+++...+.+.. +|++|+.
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 689999999876544322233335555555555544 7777774
No 161
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.13 E-value=0.00068 Score=75.03 Aligned_cols=125 Identities=10% Similarity=0.114 Sum_probs=67.7
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhh-------hcCceeccCcCC-cchHHHHHhhcCCCC-----CccCCccch
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESAS-IPYFDAIMLHMKSYD-----SPADGKSSF 731 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~~~-~~~~~~i~~~~~~~d-----~~~~~~s~f 731 (968)
+.-|+++.|.||+|+|||||+.+++...... ....|+..+... ...+..+..+++... ++.. ...+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~-~~~~ 182 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYY-IRAI 182 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE-EECC
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEE-EeCC
Confidence 3347899999999999999999998764332 112344444321 122223344444321 1110 0111
Q ss_pred HH-HHHH----HHHHHHhCCCCcEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 732 QV-EMSE----IRSIVTATTSRSLVLIDEICRGTET--------AKG----TCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 732 s~-~~~~----~~~il~~a~~~~LlLlDEp~~GlD~--------~~~----~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
.. ++.+ +...+....++++|++|++++-... .++ ..++..+....++.+++||++.|-.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 22 2222 2222222378999999999875432 122 2333444444456799999998854
No 162
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.10 E-value=0.002 Score=72.15 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=67.4
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCCC-Ccc-CCccchHHHHHHHHHH
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSYD-SPA-DGKSSFQVEMSEIRSI 741 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~d-~~~-~~~s~fs~~~~~~~~i 741 (968)
+.-|+++.|.||+|+|||||...++...... ....|+..+...-+. ...+++... ++. ....+ ..++.++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~---~a~~~g~~~~~l~i~~~~~-~e~~~~~~~~ 135 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDT-GEQALEICDA 135 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH---HHHHcCCChhheeeeCCCC-HHHHHHHHHH
Confidence 4447899999999999999999987765332 223345444322111 233444321 110 00111 1222223222
Q ss_pred HHhCCCCcEEEEeCCCCCCCHHH------------H----HHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 742 VTATTSRSLVLIDEICRGTETAK------------G----TCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~GlD~~~------------~----~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
+....++++|++|.++.-....+ . ..+...+...+++.+++||+++|-..
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 201 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred HHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 22346799999999998764211 1 22234444445678999999999543
No 163
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.06 E-value=0.00055 Score=75.54 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=53.5
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 747 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~ 747 (968)
..+.|+||+|+||||+++.++...... ....++.+.. ....+...+.. .... .......+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~------------~~~~---~~~~~~~~ 98 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD----FAQAMVEHLKK------------GTIN---EFRNMYKS 98 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH----HHHHHHHHHHH------------TCHH---HHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH----HHHHHHHHHHc------------CcHH---HHHHHhcC
Confidence 357999999999999999998764322 0111121110 01111111100 0011 11222345
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 748 RSLVLIDEICRGTE-TAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 748 ~~LlLlDEp~~GlD-~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
+.+|++||+..-.. ......+ ..+++.+.+.+..+|++|+.
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l-~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEF-FHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHH-HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEcCcccccCChHHHHHH-HHHHHHHHHCCCeEEEEecC
Confidence 89999999976332 2333444 45555566667777777663
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.05 E-value=0.00027 Score=72.23 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
..+.|+||+|+||||+++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999987653
No 165
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00024 Score=71.59 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+||||||||||++.+++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999998863
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.00 E-value=0.00032 Score=70.35 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.8
Q ss_pred Eee-ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 665 VDM-QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 665 i~l-g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
++| ..+++|+|||||||||++++|++++
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 445 3599999999999999999998764
No 167
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.99 E-value=0.00027 Score=71.50 Aligned_cols=23 Identities=39% Similarity=0.795 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~g 690 (968)
|++++|+|||||||||++|.+++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999976
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.94 E-value=0.00033 Score=71.71 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+|||||||||++|.+++..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999999998874
No 169
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.94 E-value=0.00034 Score=71.57 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=22.7
Q ss_pred CCCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 656 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 656 ~~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+..+.+++++| +++++|+||+||||||+.+.++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 9 SGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345688899998 6799999999999999999998753
No 170
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.91 E-value=0.00038 Score=76.56 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
|++++|+||||||||||+++|+|+..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999999753
No 171
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.90 E-value=0.0011 Score=71.91 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..++|+||+|+||||+++.++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45799999999999999999874
No 172
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.00047 Score=77.39 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=59.5
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC--cCCcchHH------HHHhhcCCCCCccCCccchHHHHHHHHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE--SASIPYFD------AIMLHMKSYDSPADGKSSFQVEMSEIRSI 741 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~--~~~~~~~~------~i~~~~~~~d~~~~~~s~fs~~~~~~~~i 741 (968)
.++|+|+||+|||||++.+++... ..+. .|.. ......++ .++.--|..+ ......+..+.+....
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~~--~~~~-~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~---~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAKP--EIAS-YPFTTRGINVGQFEDGYFRYQIIDTPGLLD---RPISERNEIEKQAILA 242 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSCC--EEEC-CTTCSSCEEEEEEEETTEEEEEEECTTTSS---SCSTTSCHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--ccCC-CCCeeeceeEEEEEecCceEEEEeCCCccc---cchhhhhHHHHHHHHH
Confidence 479999999999999999976431 1110 0100 00000000 0111112211 1122223333333323
Q ss_pred HHhCCCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEec--cCh
Q 002090 742 VTATTSRSLVLID-EICRGTETAKGTCIAGSIIETLDNIGCLGIVST--HLH 790 (968)
Q Consensus 742 l~~a~~~~LlLlD-Ep~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~T--H~~ 790 (968)
+....+.-|+++| +++.|+|..+...+...+.+... +..+|++. ||.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl 292 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDV 292 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECccc
Confidence 3334677889999 99999999776666554444322 56677776 664
No 173
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.85 E-value=0.00085 Score=75.20 Aligned_cols=122 Identities=17% Similarity=0.073 Sum_probs=63.5
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhh----cCc---eeccCc--CCcchHHHHHhhcCCCCCccCCccchHHHHHHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGI----CGL---MVPAES--ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~----~g~---~vp~~~--~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~ 739 (968)
..+.|+||.|+||||+++.++....-.. .+. ++.+.. .....+..++..++.... ..+. ....-...+.
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~l~ 122 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP-FTGL-SVGEVYERLV 122 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC-SSCC-CHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC-CCCC-CHHHHHHHHH
Confidence 4689999999999999999987642210 011 122211 112233455555543211 1111 1111123333
Q ss_pred HHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEeccChhh
Q 002090 740 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD----NIGCLGIVSTHLHGI 792 (968)
Q Consensus 740 ~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~----~~g~~vl~~TH~~el 792 (968)
..+.....+.+|++||+-.-.+..........+++... ..+..+|++|+..++
T Consensus 123 ~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 123 KRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 44433455779999998754322102334455555443 346788999998754
No 174
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.78 E-value=0.00028 Score=78.62 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=28.5
Q ss_pred eeeeeEee----ceEEEEEecCCCCcchHHHHHHhHHHh
Q 002090 660 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL 694 (968)
Q Consensus 660 ~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~~l 694 (968)
.+++++++ |++++|+||||||||||+++++|+...
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34555554 689999999999999999999998643
No 175
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.77 E-value=0.0035 Score=67.62 Aligned_cols=101 Identities=18% Similarity=0.320 Sum_probs=55.7
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHH-HHHHHHHHHh--CCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE-MSEIRSIVTA--TTS 747 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~-~~~~~~il~~--a~~ 747 (968)
++|+||||+|||||+|+|++..-. + ++- +...+.. +.+.++ .+.+..+... ...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~-~i~---------------i~g~~l~----~~~~~~~~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---N-FIS---------------VKGPELL----NMYVGESERAVRQVFQRAKNSA 103 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---E-EEE---------------EETTTTC----SSTTHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---C-EEE---------------EEcHHHH----hhhhhHHHHHHHHHHHHHHhcC
Confidence 899999999999999999986321 1 110 0000100 111111 2234444443 357
Q ss_pred CcEEEEeCCCCCCCHHH------HHHHHHHHHHHHH----hcCcEEEEeccChhhhh
Q 002090 748 RSLVLIDEICRGTETAK------GTCIAGSIIETLD----NIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~~~------~~~i~~~ll~~l~----~~g~~vl~~TH~~el~~ 794 (968)
|.++++||.-....... ...+...++..+. ++...++.+|+..++.+
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 89999999976432211 0123344455553 23456778898888764
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.72 E-value=0.00053 Score=70.01 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+|||||||||+++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999999999998864
No 177
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.72 E-value=0.0054 Score=63.17 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=56.9
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhC---
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT--- 745 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a--- 745 (968)
..++|+||.|+||||+++.++............|. ........+... ...+........ ......+..++..+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 121 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--GVCDNCREIEQG-RFVDLIEIDAAS-RTKVEDTRDLLDNVQYA 121 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--SCSHHHHHHHTT-CCSSEEEEETTC-GGGHHHHHHHHHSCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--cccHHHHHHhcc-CCcceEEecCcc-cccHHHHHHHHHHhhhc
Confidence 36899999999999999999765432111111111 111111111110 111111100010 11122334444432
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEeccChh
Q 002090 746 ---TSRSLVLIDEICRGTETAKGTCIAGSIIETLDN--IGCLGIVSTHLHG 791 (968)
Q Consensus 746 ---~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~--~g~~vl~~TH~~e 791 (968)
.++.+|++||+-. +++... ..+++.+.+ .+..+|++|+..+
T Consensus 122 ~~~~~~~vlviDe~~~-l~~~~~----~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 122 PARGRFKVYLIDEVHM-LSRHSF----NALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp CSSSSSEEEEEETGGG-SCHHHH----HHHHHHHHSCCTTEEEEEEESCGG
T ss_pred hhcCCceEEEEECccc-ccHHHH----HHHHHHHhcCCCceEEEEEeCChH
Confidence 3578999999865 565433 344444443 3677888888654
No 178
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.71 E-value=0.0042 Score=65.88 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=20.5
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
-++|+||+|+||||+++.+++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 37899999999999999998753
No 179
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.70 E-value=0.0026 Score=70.19 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=66.0
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhhh-----------------cCceeccCcCC-cchHHHHHhhcCCCC----
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGI-----------------CGLMVPAESAS-IPYFDAIMLHMKSYD---- 722 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la~-----------------~g~~vp~~~~~-~~~~~~i~~~~~~~d---- 722 (968)
+.-|+++.|.||+|+|||||..+++....+.. ...|+..+... ...+..+..+++...
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL 174 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 33478999999999999999999987543321 12344433321 122223334444321
Q ss_pred -CccCCccchHHH-HHH----HHHHHHhCCCCcEEEEeCCCCCCC--------HHHH----HHHHHHHHHHHHhcCcEEE
Q 002090 723 -SPADGKSSFQVE-MSE----IRSIVTATTSRSLVLIDEICRGTE--------TAKG----TCIAGSIIETLDNIGCLGI 784 (968)
Q Consensus 723 -~~~~~~s~fs~~-~~~----~~~il~~a~~~~LlLlDEp~~GlD--------~~~~----~~i~~~ll~~l~~~g~~vl 784 (968)
++.. ...+..+ +.+ +...+....++++|++|..+.-.. ..++ ..+...+....++.+++||
T Consensus 175 ~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 175 DNTFV-ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HTEEE-EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCEEE-EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 1110 0112222 122 222332236789999999875431 1222 2333444455566799999
Q ss_pred Eecc
Q 002090 785 VSTH 788 (968)
Q Consensus 785 ~~TH 788 (968)
++.|
T Consensus 254 ~~nq 257 (322)
T 2i1q_A 254 VTNQ 257 (322)
T ss_dssp EEEC
T ss_pred EECc
Confidence 8877
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.67 E-value=0.00075 Score=69.01 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
|++++|+|||||||||++|.+++...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999998754
No 181
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.67 E-value=0.0049 Score=65.20 Aligned_cols=22 Identities=41% Similarity=0.752 Sum_probs=20.4
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
++|+||||+|||||+|++++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998864
No 182
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.66 E-value=0.009 Score=65.87 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
+++++|+||||+||||++..+++...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 183
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.65 E-value=0.003 Score=62.72 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=55.1
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC--cCCcc--hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE--SASIP--YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~--~~~~~--~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~ 744 (968)
..++|+||.|+||||+++.++....-.. .+.. ...+- .+..+.... .....+...+.++...+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 112 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGE----VPEGLKGRRVLALDMGALVAGA-------KYRGEFEERLKGVLNDLAK 112 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTC----SCGGGTTCEEEEECHHHHHTTT-------CSHHHHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCC----CchhhcCCcEEEeeHHHHhccC-------CccccHHHHHHHHHHHHhh
Confidence 4578999999999999999977543211 1110 00000 111111100 0011111222233333334
Q ss_pred CCCCcEEEEeCCCCCCCHH---HHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 745 TTSRSLVLIDEICRGTETA---KGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~---~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
...+.+|++||.-.-.+.. ....+...+...+...+..+|++|...+.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 163 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHH
Confidence 5678899999985533211 01112233334444456777888876554
No 184
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.64 E-value=0.0011 Score=64.85 Aligned_cols=28 Identities=43% Similarity=0.703 Sum_probs=23.9
Q ss_pred eEee-ceEEEEEecCCCCcchHHHHHHhH
Q 002090 664 TVDM-QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 664 ~i~l-g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++| ..+.+|+|||||||||++.+|...
T Consensus 18 ~i~f~~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEcCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566 579999999999999999999754
No 185
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.63 E-value=0.00076 Score=77.23 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=26.7
Q ss_pred eeeeEee---ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 661 VHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 661 v~~~i~l---g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
+++++ + +++++|+|||||||||||+++++.+.
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 45555 3 68999999999999999999988753
No 186
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.61 E-value=0.00071 Score=67.06 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|||||||||+++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999886
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.60 E-value=0.00078 Score=69.43 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+|||||||||+++.+++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5789999999999999999998763
No 188
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.59 E-value=0.0036 Score=65.63 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|+.++|.||+||||||++..+..-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhc
Confidence 456899999999999999877554
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.58 E-value=0.00096 Score=66.37 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+|||||||||+++.+++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998763
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.55 E-value=0.0022 Score=63.60 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=55.7
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccC--cCCc--chHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE--SASI--PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~--~~~~--~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~ 744 (968)
..++|+||.|+||||+++.++....-.. .|.. ...+ -....+.... .........+.++...+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 112 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQGD----VPDSLKGRKLVSLDLSSLIAGA-------KYRGDFEERLKSILKEVQD 112 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHTTC----SCTTTTTCEEEEECHHHHHHHC-------CSHHHHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcC----CcchhcCCeEEEEeHHHhhcCC-------CchhHHHHHHHHHHHHHHh
Confidence 3578999999999999999976542211 1110 0000 0111121110 0011112223333333444
Q ss_pred CCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 745 TTSRSLVLIDEICRGT----ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 745 a~~~~LlLlDEp~~Gl----D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
...+.+|++||.-.-. +......+...+...+.+.+..+|++|+..+.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~ 164 (187)
T 2p65_A 113 AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEY 164 (187)
T ss_dssp TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHHH
T ss_pred cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHHH
Confidence 5678899999974322 01111223334444444556777788876553
No 191
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis}
Probab=96.55 E-value=0.0013 Score=58.86 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=55.1
Q ss_pred ceeEEeecCCccccccccCchhhHHHhhhcccCc--------ccceeEE-EeeCCchhHHHHHHHHHhhhh-hccccccc
Q 002090 877 SCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGM--------QSASFLY-FVVPGKSIACQIETLLINQLY-SQGFLLAN 946 (968)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~e~~~~~~l~-~~~~~l~~ 946 (968)
-+||++...++.+|+|-|.||++|+.+|....|. .....+| ...+.++.|.+.|. .+++++ .+-..|+.
T Consensus 7 ~~vYIL~~~~g~lY~G~T~dl~rRl~qHn~g~ga~~T~~~~~~p~~LVy~e~f~~~~~Al~rE~-~iK~~~R~~K~~LI~ 85 (96)
T 1ywl_A 7 HYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHTEKFETRSEATKAEA-AFKKLTRKQKEQYLK 85 (96)
T ss_dssp EEEEEEECTTCCCEEEEESCHHHHHHHHHHHHSCSSCSSCCSSCCEEEEEEEESSHHHHHHHHH-HHHHSCHHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEEEeCCHHHHHHHHHcCCCCCcccccCCCCeEEEEEEecCCHHHHHHHHH-HHHcCCHHHHHHHHh
Confidence 4899999999999999999999999999876432 2223444 44889999999999 555666 55555555
Q ss_pred cccCC
Q 002090 947 IADGK 951 (968)
Q Consensus 947 ~~~~~ 951 (968)
...-.
T Consensus 86 ~~np~ 90 (96)
T 1ywl_A 86 TFHLE 90 (96)
T ss_dssp HHHHS
T ss_pred ccCcc
Confidence 44333
No 192
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.55 E-value=0.00014 Score=76.26 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=25.4
Q ss_pred eEee-ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 664 TVDM-QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 664 ~i~l-g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++| .++++|+|||||||||+|++|+|+.
T Consensus 22 ~~~~~~~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 22 TFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp EECHHHHHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEcCcEEEEECCCCCCHHHHHHHHhccc
Confidence 5666 5788999999999999999998875
No 193
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.53 E-value=0.00029 Score=84.83 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCceeeeeEee----ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 657 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 657 ~~~~v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+...+++.+++ |+.++|+||||+||||++++|+++.
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 45566677766 7899999999999999999999975
No 194
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.51 E-value=0.014 Score=63.99 Aligned_cols=102 Identities=20% Similarity=0.311 Sum_probs=55.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 747 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~ 747 (968)
|.++.|.||.|+|||||..+++.. ......|+..+.... +...+ .....-..++...+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~---------v~~~~------~~le~~l~~i~~~l~~--- 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEP---------LSGYN------TDFNVFVDDIARAMLQ--- 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCS---------STTCB------CCHHHHHHHHHHHHHH---
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhh---------hhhhh------cCHHHHHHHHHHHHhh---
Confidence 678899999999999999999754 111223443310000 01100 1111111122222322
Q ss_pred CcEEEEeCCCCCCCHHH-----------HHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 748 RSLVLIDEICRGTETAK-----------GTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~~~-----------~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
.++|++||..+=..... ...+...+...+.+.|+++|++|+-
T Consensus 183 ~~LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 183 HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCEEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 22999999986433222 2344455555556679999999883
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.49 E-value=0.00085 Score=70.30 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|.+++|.|||||||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999886
No 196
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.45 E-value=0.017 Score=64.83 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=66.0
Q ss_pred eEeeceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCCC-Ccc-CCccchHHHHHHHHH
Q 002090 664 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSYD-SPA-DGKSSFQVEMSEIRS 740 (968)
Q Consensus 664 ~i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~d-~~~-~~~s~fs~~~~~~~~ 740 (968)
++.-|+++.|.||.|+|||||...++...... ....|+..+...-+. ...+++... ++. ....+. .++.++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~~~~~-e~~l~~l~ 145 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQPDNG-EQALEIME 145 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSH-HHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH---HHHHcCCCHHHceeecCCcH-HHHHHHHH
Confidence 34447899999999999999998887654321 223455444332221 233444321 110 111121 12222222
Q ss_pred HHHhCCCCcEEEEeCCCCCCC-H------H-----HHHHHHHHHHHHH----HhcCcEEEEeccCh
Q 002090 741 IVTATTSRSLVLIDEICRGTE-T------A-----KGTCIAGSIIETL----DNIGCLGIVSTHLH 790 (968)
Q Consensus 741 il~~a~~~~LlLlDEp~~GlD-~------~-----~~~~i~~~ll~~l----~~~g~~vl~~TH~~ 790 (968)
.+....++++|++|.++.=.. . . ........+++.| ++.+++||++.|-.
T Consensus 146 ~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 222346789999999987541 1 0 1112223344444 56799999998864
No 197
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.43 E-value=0.0051 Score=64.22 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=61.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh--cCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI--CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA- 744 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~--~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~- 744 (968)
|.+++++||-|+||||++..++.-..-+. ...+-|..... + ...+..++|..-... .... ..++...+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~srlG~~~~~~-~~~~----~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQSRTGTSLPSV-EVES----APEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCCCCCCSSCCE-EESS----THHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHHhcCCCcccc-ccCC----HHHHHHHHHHH
Confidence 67899999999999998877755432221 11122332221 1 113444554321110 1111 1223333332
Q ss_pred --CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 745 --TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 745 --a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
..++++|++||.-- ++.. + ...++.+.+.|..||++-|+.++
T Consensus 85 ~~~~~~dvViIDEaQ~-l~~~----~-ve~l~~L~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQF-FDDR----I-CEVANILAENGFVVIISGLDKNF 128 (223)
T ss_dssp TSCTTCCEEEECSGGG-SCTH----H-HHHHHHHHHTTCEEEEECCSBCT
T ss_pred hhCCCCCEEEEecCcc-CcHH----H-HHHHHHHHhCCCeEEEEeccccc
Confidence 24589999999954 5442 2 22345566679999999996554
No 198
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.37 E-value=0.0013 Score=72.69 Aligned_cols=24 Identities=46% Similarity=0.636 Sum_probs=21.9
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+++|+|+||||||||||.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999999873
No 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.34 E-value=0.0017 Score=66.47 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+.+++|+|||||||||+++.+++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998865
No 200
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.33 E-value=0.0012 Score=70.19 Aligned_cols=22 Identities=27% Similarity=0.712 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCCcchHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSIC 689 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~ 689 (968)
+.+++|+|||||||||++|.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999998
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.31 E-value=0.0044 Score=77.02 Aligned_cols=104 Identities=18% Similarity=0.261 Sum_probs=57.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh--CC
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA--TT 746 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~--a~ 746 (968)
+.++|+||||+||||++|+|++.. +... ..+.- ..++. .....+.. .+..++.. ..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l-----~~~~----i~v~~-~~l~~---------~~~g~~~~---~l~~vf~~a~~~ 296 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANET-----GAFF----FLING-PEIMS---------KLAGESES---NLRKAFEEAEKN 296 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTT-----TCEE----EEEEH-HHHSS---------SSTTHHHH---HHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc-----CCcE----EEEEc-hHhhh---------hhhhhHHH---HHHHHHHHHHhc
Confidence 458999999999999999998863 1110 00110 11110 11111111 22223222 34
Q ss_pred CCcEEEEeCCCCCCC------HHHHHHHHHHHHHHHHh----cCcEEEEeccChhhhh
Q 002090 747 SRSLVLIDEICRGTE------TAKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFS 794 (968)
Q Consensus 747 ~~~LlLlDEp~~GlD------~~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el~~ 794 (968)
.|.++++||+-..+. ......+...++..+.. .+..+|.+||+.+..+
T Consensus 297 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 689999999944332 12223444555555542 3568889999876543
No 202
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.25 E-value=0.0019 Score=72.36 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=24.3
Q ss_pred eEee-ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 664 TVDM-QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 664 ~i~l-g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++| ..+++|+||||+||||++++|+++.
T Consensus 21 ~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 21 TLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 3444 3499999999999999999999864
No 203
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans}
Probab=96.22 E-value=0.0051 Score=56.19 Aligned_cols=68 Identities=26% Similarity=0.386 Sum_probs=51.5
Q ss_pred ceeEEeecCCccccccccCchhhHHHhhhcccCc------ccceeEE-EeeCCchhHHHHHHHHHhhhh-hcccccc
Q 002090 877 SCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGM------QSASFLY-FVVPGKSIACQIETLLINQLY-SQGFLLA 945 (968)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~e~~~~~~l~-~~~~~l~ 945 (968)
-+||++...++.+|+|-|.||++|+.+|....|. .....+| ...+.++.|.+.|. .++++. .+-..|+
T Consensus 8 ~~VYIL~~~~g~lY~G~T~dl~rRl~qH~~g~ga~~T~~~~p~~LVy~e~f~~~~~Al~rE~-~iK~~~R~~K~~LI 83 (107)
T 1zg2_A 8 HYVYILECKDGSWYTGYTTDVDRRIKKHASGKGAKYTRGRGPFRLVATWAFPSKEEAMRWEY-EVKHLSRRKKEQLV 83 (107)
T ss_dssp EEEEEEECTTSCEEEEEECCHHHHHHHHHHHTTCCSCCCCSSCEEEEEEEESCHHHHHHHHH-HHHHSCHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEEEECCHHHHHHHHHccCCCCccccCCCCEEEEEEecCCHHHHHHHHH-HHhcCCHHHHHHHH
Confidence 4899999999999999999999999999876432 2334444 45889999999999 555565 4444444
No 204
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.22 E-value=0.0018 Score=71.35 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=21.3
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++|+|||||||||++++++++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 205
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.21 E-value=0.0014 Score=71.70 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|++++|+||||+|||||+++|+|+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 678999999999999999999665
No 206
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.20 E-value=0.00077 Score=71.79 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=29.8
Q ss_pred ccCCCceeeeeEee-------ceEEEEEecCCCCcchHHHHHHhH
Q 002090 654 DAAEGSAVHNTVDM-------QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 654 ~~~~~~~v~~~i~l-------g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+.++..++++++| |++++|+|++||||||+.+.+++.
T Consensus 27 ~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 27 PFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -----CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred EecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33345678899887 579999999999999999999875
No 207
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.19 E-value=0.021 Score=62.39 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=65.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh---hhcCceeccCcCCcchHHHHHhhcCCC-CCccCCccchHHHH-HHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL---GICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEM-SEIRSIV 742 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l---a~~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~~~~s~fs~~~-~~~~~il 742 (968)
| ++.|.||.|+|||||+-+++..... .....|+-.+...-+ ....++|.. +++.....+-..++ .++...+
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 5 6899999999999997776554332 122345555444322 135566653 22211111111122 2333333
Q ss_pred H--hCCCCcEEEEeCCCCCCC--HHH------------H-HHHH---HHHHHHHHhcCcEEEEeccChh
Q 002090 743 T--ATTSRSLVLIDEICRGTE--TAK------------G-TCIA---GSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 743 ~--~a~~~~LlLlDEp~~GlD--~~~------------~-~~i~---~~ll~~l~~~g~~vl~~TH~~e 791 (968)
. ...+|++|++|=.++=.. ..+ + ..+. ..+...+++.++++|++-|-..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 2 235799999999887642 111 1 1222 2234455678999999999755
No 208
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.18 E-value=0.002 Score=65.86 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|++++|+||||+|||||++.+++.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 688999999999999999999765
No 209
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.17 E-value=0.0023 Score=70.33 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=50.5
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCc
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 749 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~ 749 (968)
-+.|.||.|+|||+|+++|+..+.. ..|..+ .+-....++..+... ...+ .+ ...+....+++
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~-~~g~~v-----~~~~~~~l~~~l~~~--~~~~--~~-------~~~~~~~~~~~ 216 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSE-KKGVST-----TLLHFPSFAIDVKNA--ISNG--SV-------KEEIDAVKNVP 216 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-HSCCCE-----EEEEHHHHHHHHHCC--CC-------------CCTTHHHHTSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-hcCCcE-----EEEEHHHHHHHHHHH--hccc--hH-------HHHHHHhcCCC
Confidence 4789999999999999999875431 122111 001111222221100 0000 00 00111233568
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEeccC
Q 002090 750 LVLIDEICRG-TETAKGTCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 750 LlLlDEp~~G-lD~~~~~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
+|+|||++.. ++......+...+++.....+..+|++|+.
T Consensus 217 lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 217 VLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp EEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 9999999642 333222335455665543345667777774
No 210
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.16 E-value=0.017 Score=66.60 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=24.7
Q ss_pred eceEEEEEecCCCCcchHHHHHHhHHHh
Q 002090 667 MQSLFLLTGPNGGGKSSLLRSICAASLL 694 (968)
Q Consensus 667 lg~~~~I~GpNGsGKSTllk~i~gl~~l 694 (968)
-|++++|.|++|+|||||+..++.....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999887654
No 211
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.16 E-value=0.0015 Score=76.73 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=26.6
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++++++ |+.++|+|||||||||+|+++++++
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4455555 6789999999999999999998865
No 212
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.15 E-value=0.0016 Score=72.81 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+||||+|||||+++|+|..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 7899999999999999999997753
No 213
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.15 E-value=0.0087 Score=65.27 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..++|.||+|+||||++|.++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45799999999999999999875
No 214
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.14 E-value=0.0024 Score=73.54 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=26.0
Q ss_pred eEee--ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 664 TVDM--QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 664 ~i~l--g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+++ +++++|+|||||||||++++|+++.
T Consensus 20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 20 KVGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4666 6899999999999999999999986
No 215
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.13 E-value=0.0029 Score=64.97 Aligned_cols=29 Identities=41% Similarity=0.654 Sum_probs=24.4
Q ss_pred eEee-ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 664 TVDM-QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 664 ~i~l-g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.++| ..+.+|+|||||||||++.+|..++
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567 4799999999999999999996543
No 216
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.13 E-value=0.0051 Score=68.23 Aligned_cols=113 Identities=11% Similarity=0.028 Sum_probs=61.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhh-cCceeccCcCCcchHHHHHhhc-CCCC-CccCCccchHH-HHHHHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHM-KSYD-SPADGKSSFQV-EMSEIRSIVT 743 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~-~g~~vp~~~~~~~~~~~i~~~~-~~~d-~~~~~~s~fs~-~~~~~~~il~ 743 (968)
|++++|.|++|+|||||+..++....... ...|+.-+...-....++.... +..- .+.. ..++. +..++.....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~--g~Ls~~e~~~l~~a~~ 123 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLES--GRLDDDQWENLAKCFD 123 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHH--TCCCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhc--CCCCHHHHHHHHHHHH
Confidence 68899999999999999999987764421 1122222222112222222211 1110 0111 12333 3444555555
Q ss_pred hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hc-CcEEEEecc
Q 002090 744 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NI-GCLGIVSTH 788 (968)
Q Consensus 744 ~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~-~~-g~~vl~~TH 788 (968)
.+.+..++|.|+|+.. +. .| .+.++.++ +. |..+||+=|
T Consensus 124 ~l~~~~l~I~d~~~~s--i~---~i-~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 124 HLSQKKLFFYDKSYVR--IE---QI-RLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHSCEEEECCTTCC--HH---HH-HHHHHHHHHHCTTEEEEEEEE
T ss_pred HHhcCCeEEeCCCCCc--HH---HH-HHHHHHHHHhcCCCCEEEEec
Confidence 5667789999998654 32 23 34444444 44 678888866
No 217
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.09 E-value=0.0043 Score=66.73 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.-+.|.||.|+||||+++.++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34799999999999999999764
No 218
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.05 E-value=0.0015 Score=65.32 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLL 694 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~l 694 (968)
++++|+||||||||||++.|+++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47899999999999999999988643
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.05 E-value=0.0031 Score=74.79 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|..++|+||||+||||++|+|++..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999999875
No 220
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.01 E-value=0.009 Score=72.58 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=62.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh-hhcCceeccCcCCcchH-HHHHhhcC------------CCCCcc--CCccch
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYF-DAIMLHMK------------SYDSPA--DGKSSF 731 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l-a~~g~~vp~~~~~~~~~-~~i~~~~~------------~~d~~~--~~~s~f 731 (968)
++.++|+|+||+|||||++.+++.... ...|..... .....+. ...-..++ ...++. -+...|
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g-~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG-TTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT-CCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC-cccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 577999999999999999999865321 111211000 0000000 00000000 011111 122344
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 732 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 732 s~~~~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
...+. ..+ ...+.-++++| ++.|+++... .+++.+.+.+..+|++.|.+++.
T Consensus 88 ~~~~~---~~l-~~ad~~ilVvD-~~~g~~~qt~-----~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIR---GAL-EAADAALVAVS-AEAGVQVGTE-----RAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHH---HHH-HHCSEEEEEEE-TTTCSCHHHH-----HHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHH---HHH-hhcCcEEEEEc-CCcccchhHH-----HHHHHHHHccCCEEEEecCCchh
Confidence 43322 222 24667899999 9999998653 33444455688888999988875
No 221
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.97 E-value=0.018 Score=67.26 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=56.2
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhC--CCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT--TSR 748 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a--~~~ 748 (968)
++|+||||+|||||+|+|++..- .+. +.-.... + . .. ......+++..+...+ ..|
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~---~~~-i~i~g~~------~-~--------~~---~~g~~~~~v~~lfq~a~~~~p 124 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR---VPF-ITASGSD------F-V--------EM---FVGVGAARVRDLFETAKRHAP 124 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT---CCE-EEEEGGG------G-T--------SS---CTTHHHHHHHHHTTTSSSSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCE-EEEehhH------H-H--------Hh---hhhhHHHHHHHHHHHHHhcCC
Confidence 79999999999999999998641 111 1100000 0 0 00 0111223344555544 357
Q ss_pred cEEEEeCCCC-CC--------CHHHHHHHHHHHHHHHHh----cCcEEEEeccChhhhh
Q 002090 749 SLVLIDEICR-GT--------ETAKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFS 794 (968)
Q Consensus 749 ~LlLlDEp~~-Gl--------D~~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el~~ 794 (968)
.++++||.-. +. ...+.......++..+.. .+..++.+|+..+..+
T Consensus 125 ~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD 183 (499)
T 2dhr_A 125 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 183 (499)
T ss_dssp CEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSC
T ss_pred CEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcC
Confidence 9999999821 11 122333444555555431 3467788899887644
No 222
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.95 E-value=0.0027 Score=64.96 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
+++|+|||||||||+.+.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.94 E-value=0.014 Score=66.93 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+++++|++|+||||++..++..+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHH
Confidence 578999999999999999998654
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.92 E-value=0.033 Score=61.13 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
|++++|.|+.|+|||||+..++....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987654
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.89 E-value=0.0032 Score=64.14 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
+++|+|+|||||||+.+.+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999987
No 226
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.86 E-value=0.003 Score=69.10 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCcchHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSIC 689 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~ 689 (968)
|++++|+||||+|||||+|+|+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999996
No 227
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.86 E-value=0.0047 Score=67.24 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
..++|.||.|+|||++.+.|+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999998754
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.85 E-value=0.0012 Score=72.41 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|++++|+||||+|||||+++|+|..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 6789999999999999999997653
No 229
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.82 E-value=0.0038 Score=64.64 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+||+||||||+.+.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 230
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.79 E-value=0.0058 Score=64.06 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=55.7
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCc---eeccCc--CCcchHHHHHhhcCCCCCccCCccchH-HH-HHHHHHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGL---MVPAES--ASIPYFDAIMLHMKSYDSPADGKSSFQ-VE-MSEIRSIV 742 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~---~vp~~~--~~~~~~~~i~~~~~~~d~~~~~~s~fs-~~-~~~~~~il 742 (968)
.++|+|++|+|||||++.+.|..... .+. .+.... ..+.+-+ ..+.+-|.........+ .+ ..++...+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKE---TELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETT---EEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCC---ceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 47999999999999999997643210 000 000000 0000000 00111111111100111 01 22333333
Q ss_pred H-hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEecc
Q 002090 743 T-ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN--IGCLGIVSTH 788 (968)
Q Consensus 743 ~-~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~--~g~~vl~~TH 788 (968)
. ....++++|+..+.+..+..+...+ ..+.+.+.. ...++|+.||
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHHHGGGEEEEEEC
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhhccceEEEEEeC
Confidence 3 3567889999888777777554444 555554432 2368889999
No 231
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.014 Score=64.56 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.1
Q ss_pred EEEEecCCCCcchHHHHHHhHHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
++|+||+|+||||+++.++..+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999988753
No 232
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.78 E-value=0.005 Score=64.10 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 746 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 746 ~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
..|+++|+||++.--.+..+..+.+..+..+.+.|..++.++|-..+
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~ 129 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHL 129 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGB
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcccccc
Confidence 36999999999864333333344455555566778899999885433
No 233
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.73 E-value=0.012 Score=65.97 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+||.|+||||+++.++..
T Consensus 119 ~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 234
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.73 E-value=0.0042 Score=62.71 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.++|+|+||+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 235
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.70 E-value=0.0019 Score=72.83 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=26.1
Q ss_pred eeeeEee----ceEEEEEecCCCCcchHHHHHHhH
Q 002090 661 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 661 v~~~i~l----g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++++++ |++++|+||||+|||||++.+++.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4555554 689999999999999999999985
No 236
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.60 E-value=0.005 Score=62.97 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|++||||||+++.+++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999875
No 237
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.55 E-value=0.006 Score=60.82 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|.+++|+|++||||||+.+.++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999998864
No 238
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.50 E-value=0.0053 Score=62.18 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+||+|||||++.++|.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 239
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.49 E-value=0.027 Score=59.35 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-+.|+||.|+||||+.+.++..
T Consensus 41 ~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999774
No 240
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.42 E-value=0.0053 Score=68.05 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.1
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+.++|+||||+|||||+|+|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999999874
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.39 E-value=0.072 Score=70.29 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=66.6
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhhh-cCceeccCcCCcchHHHHHhhcCCC-CCcc-CCccchHHHHHHHHHH
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSY-DSPA-DGKSSFQVEMSEIRSI 741 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la~-~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~-~~~s~fs~~~~~~~~i 741 (968)
+.-|+++.|.||+|+|||||+..++....... ...|+..+...-.. ...+++.. +++. ....+. .++.+...-
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql---~A~~lGvd~~~L~i~~~~~l-eei~~~l~~ 804 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTG-EQALEICDA 804 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSSH-HHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH---HHHHcCCChhheEEecCCcH-HHHHHHHHH
Confidence 44478999999999999999999988754321 12344333322221 13334421 1110 111111 122222222
Q ss_pred HHhCCCCcEEEEeCCCCCCC-HH------------HHHHH---HHHHHHHHHhcCcEEEEeccCh
Q 002090 742 VTATTSRSLVLIDEICRGTE-TA------------KGTCI---AGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~GlD-~~------------~~~~i---~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
+....++++|++|+...-.. .. ....+ ...+...+++.|++||+++|-.
T Consensus 805 lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~ 869 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 22246899999999987652 10 11223 2333334567899999999943
No 242
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.35 E-value=0.005 Score=72.89 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
|++++|+|+|||||||++|+|++.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 67899999999999999999998753
No 243
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.31 E-value=0.03 Score=60.77 Aligned_cols=24 Identities=38% Similarity=0.726 Sum_probs=21.4
Q ss_pred EEEEEecCCCCcchHHHHHHhHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
.++|+||+|+||||+.+.++....
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 478999999999999999998753
No 244
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.033 Score=63.62 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=58.9
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHH--hCCC
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT--ATTS 747 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~--~a~~ 747 (968)
-+++.||.|+|||++.|+||+-. |..+- .+...+...... ....+.+..+.. ....
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~-----~~~~~--------------~v~~~~l~~~~~---Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST-----KAAFI--------------RVNGSEFVHKYL---GEGPRMVRDVFRLARENA 265 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH-----TCEEE--------------EEEGGGTCCSSC---SHHHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-----CCCeE--------------EEecchhhcccc---chhHHHHHHHHHHHHHcC
Confidence 37999999999999999998753 22110 011111111111 112222333332 3567
Q ss_pred CcEEEEeCCC----------CCCCHHHHHHHHHHHHHHHHh----cCcEEEEeccChhhhhcc
Q 002090 748 RSLVLIDEIC----------RGTETAKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 748 ~~LlLlDEp~----------~GlD~~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el~~~~ 796 (968)
|+++++||.- .+-|. ....+...++..+.. .+..||.+|+..+..+-+
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~-~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~A 327 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDR-EVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPA 327 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCC-HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHH
T ss_pred CCeeechhhhhhhccccCCCCCCCh-HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChh
Confidence 9999999983 12232 233444566666642 356888999988765543
No 245
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.18 E-value=0.05 Score=59.88 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=54.5
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCc
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 749 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~ 749 (968)
-++|.||.|+|||++.+.++.... ...++... ..+.............+++...+ ....|.
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~---------------~~~l~~~~~g~~~~~~~~lf~~a-~~~~~~ 107 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEAN---NSTFFSIS---------------SSDLVSKWLGESEKLVKNLFQLA-RENKPS 107 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEE---------------CCSSCCSSCCSCHHHHHHHHHHH-HHTSSE
T ss_pred eEEEECCCCccHHHHHHHHHHHcC---CCcEEEEE---------------hHHHHhhhhhHHHHHHHHHHHHH-HhcCCc
Confidence 478999999999999999976430 11111100 01111111111111222222222 246789
Q ss_pred EEEEeCCCCC------CCHHHHHHHHHHHHHHHHh-----cCcEEEEeccChhhh
Q 002090 750 LVLIDEICRG------TETAKGTCIAGSIIETLDN-----IGCLGIVSTHLHGIF 793 (968)
Q Consensus 750 LlLlDEp~~G------lD~~~~~~i~~~ll~~l~~-----~g~~vl~~TH~~el~ 793 (968)
+|++||.-+- .+......+...++..+.. .+..+|.+|...+..
T Consensus 108 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 108 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 162 (322)
T ss_dssp EEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred EEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence 9999998542 1222233444556665542 345677788766543
No 246
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.17 E-value=0.12 Score=53.85 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|.+++|.||+||||||+++.++...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998764
No 247
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.16 E-value=0.042 Score=52.73 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=46.7
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCcE
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 750 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~L 750 (968)
+.|+||.|+|||++.+.++... ..++.-.... +.... ...++..+ +..+
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~-----~~~~~~~~~~-----------------------~~~~~--~~~~~~~a-~~~~ 78 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG-----TPWVSPARVE-----------------------YLIDM--PMELLQKA-EGGV 78 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT-----SCEECCSSTT-----------------------HHHHC--HHHHHHHT-TTSE
T ss_pred EEEECCCCccHHHHHHHHHHhC-----CCeEEechhh-----------------------CChHh--hhhHHHhC-CCCe
Confidence 6899999999999999995431 1111111000 00000 12233333 3579
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEecc
Q 002090 751 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 788 (968)
Q Consensus 751 lLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH 788 (968)
+++||+.. +++.....+. .+++.-...+..+|++|.
T Consensus 79 l~lDei~~-l~~~~q~~Ll-~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 79 LYVGDIAQ-YSRNIQTGIT-FIIGKAERCRVRVIASCS 114 (143)
T ss_dssp EEEEECTT-CCHHHHHHHH-HHHHHHTTTTCEEEEEEE
T ss_pred EEEeChHH-CCHHHHHHHH-HHHHhCCCCCEEEEEecC
Confidence 99999875 4554444443 333332234577777776
No 248
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.076 Score=60.80 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=59.7
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHH-HHHHHHHH--HHhCC
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV-EMSEIRSI--VTATT 746 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~-~~~~~~~i--l~~a~ 746 (968)
-+++.||.|+|||++.|+||+-. |..+. .+...+.. +.+.+ ..+.+..+ .+...
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~-----~~~~~--------------~v~~s~l~----sk~~Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATI-----GANFI--------------FSPASGIV----DKYIGESARIIREMFAYAKEH 273 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH-----TCEEE--------------EEEGGGTC----CSSSSHHHHHHHHHHHHHHHS
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-----CCCEE--------------EEehhhhc----cccchHHHHHHHHHHHHHHhc
Confidence 47899999999999999998753 32110 00011111 11111 11222222 23357
Q ss_pred CCcEEEEeCCCCC--------CCH-HHHHHHHHHHHHHHHh----cCcEEEEeccChhhhhccc
Q 002090 747 SRSLVLIDEICRG--------TET-AKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 747 ~~~LlLlDEp~~G--------lD~-~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el~~~~~ 797 (968)
.|.+|++||.-+- ... .........++..+.. .+..||.+|...+..+-+.
T Consensus 274 ~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAl 337 (437)
T 4b4t_L 274 EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPAL 337 (437)
T ss_dssp CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTT
T ss_pred CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHH
Confidence 8999999998431 111 1223344566666642 3568899999888765443
No 249
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.13 E-value=0.068 Score=55.71 Aligned_cols=109 Identities=15% Similarity=0.072 Sum_probs=59.8
Q ss_pred eceEEEEEecCCCCcchHHHHHHhHHHhhhcCc--eeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh
Q 002090 667 MQSLFLLTGPNGGGKSSLLRSICAASLLGICGL--MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 667 lg~~~~I~GpNGsGKSTllk~i~gl~~la~~g~--~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~ 744 (968)
.|.+..++||=||||||.+-..+.-...+..-. +-|......+ ..+..++|..-.. ....... + ++..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~a-~~i~~~~-d------i~~~ 87 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEA-LPACLLR-D------VAQE 87 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEE-EEESSGG-G------GHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch--HHHHhhcCCeeEE-EecCCHH-H------HHHH
Confidence 378999999999999987655544433332222 2344443333 4566666543211 1111111 1 2222
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
+.+.++|++||.---.+ ...+++.+.+.|..||++-++.++
T Consensus 88 ~~~~dvViIDEaQF~~~-------v~el~~~l~~~gi~VI~~GL~~DF 128 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD-------IVEFCEAMANAGKTVIVAALDGTF 128 (234)
T ss_dssp HTTCSEEEESSGGGCTT-------HHHHHHHHHHTTCEEEEECCSBCT
T ss_pred hccCCEEEEEchhhhhh-------HHHHHHHHHhCCCEEEEEeccccc
Confidence 36789999999855544 356667777789999999998443
No 250
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.09 E-value=0.0063 Score=61.49 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=25.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 747 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 747 ~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
+.++|++||.-. +++. + ...++.+.+.|..++++.++.+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~-~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----L-FEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCTT----H-HHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCHH----H-HHHHHHHHHCCCCEEEEeeccc
Confidence 578999999854 4442 2 2334444555888988888544
No 251
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.03 E-value=0.055 Score=59.53 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+||.|+||||+++.++..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4799999999999999999654
No 252
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.02 E-value=0.013 Score=65.90 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=25.0
Q ss_pred eEee-ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 664 TVDM-QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 664 ~i~l-g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.++| ..+.+|+|||||||||++..|+-..
T Consensus 20 ~i~f~~gl~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 20 RIKFEKGIVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp EEECCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEecCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5666 5799999999999999999998644
No 253
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.046 Score=61.76 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=59.2
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchH-HHHHHHHHHHH--hCCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ-VEMSEIRSIVT--ATTS 747 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs-~~~~~~~~il~--~a~~ 747 (968)
+.+.||.|+|||++.|++|+-. |..+. .+...+. .+.+. ...+.+..+.. ....
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~-----~~~f~--------------~v~~s~l----~sk~vGese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHT-----DCKFI--------------RVSGAEL----VQKYIGEGSRMVRELFVMAREHA 241 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH-----TCEEE--------------EEEGGGG----SCSSTTHHHHHHHHHHHHHHHTC
T ss_pred eEEeCCCCCCHHHHHHHHHHhh-----CCCce--------------EEEhHHh----hccccchHHHHHHHHHHHHHHhC
Confidence 7899999999999999998752 22110 0111111 11121 12233333333 3577
Q ss_pred CcEEEEeCCCCCC-------CH--HHHHHHHHHHHHHHHh----cCcEEEEeccChhhhhccc
Q 002090 748 RSLVLIDEICRGT-------ET--AKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 748 ~~LlLlDEp~~Gl-------D~--~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el~~~~~ 797 (968)
|.+|++||.-+-. +. .........++..+.. .+..||.+|...+..+-+.
T Consensus 242 P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAl 304 (405)
T 4b4t_J 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPAL 304 (405)
T ss_dssp SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHH
T ss_pred CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhH
Confidence 9999999975422 11 1223344566666542 3567889999887765443
No 254
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.99 E-value=0.0092 Score=60.73 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+++|+|++||||||+.+.++...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997753
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.92 E-value=0.0089 Score=61.08 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|.+++|+||+||||||+.+.++..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999664
No 256
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.83 E-value=0.011 Score=63.66 Aligned_cols=22 Identities=41% Similarity=0.752 Sum_probs=20.3
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
++|+||||+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 7899999999999999998864
No 257
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.81 E-value=0.13 Score=67.98 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=69.1
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCC-CCcc-CCccchHHHHHHHHHH
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPA-DGKSSFQVEMSEIRSI 741 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~-~~~s~fs~~~~~~~~i 741 (968)
+.-|+++.|.||.|+|||||.-+++...... ....|+..+...-.. ....++.. +++. ....+ ..++.++...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~i~~~~~-~e~~l~~l~~ 455 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDT-GEQALEICDA 455 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH---HHHHcCCCHHHeEEcCCCC-HHHHHHHHHH
Confidence 4447899999999999999999987765432 223345444332221 23344432 1111 11111 1222233222
Q ss_pred HHhCCCCcEEEEeCCCCCCCHH------------HHH----HHHHHHHHHHHhcCcEEEEeccChh
Q 002090 742 VTATTSRSLVLIDEICRGTETA------------KGT----CIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~GlD~~------------~~~----~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
+....++++|++|.+..=.... ... .+...+...+++.++++|+++|-..
T Consensus 456 lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~ 521 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 521 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred HHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 2235689999999998766411 111 2223334444678999999999543
No 258
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.77 E-value=0.035 Score=56.43 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=56.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCc--eeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGL--MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~--~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a 745 (968)
|.+.+++||-|+||||.+-.++--..-+..-. +-|......+ ...+..++|..-. ....... ..++..+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~~~~-a~~~~~~-------~~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQ-AVAIKNS-------REILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEE-CEEESSS-------THHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCCcee-eEeeCCH-------HHHHHHH
Confidence 57899999999999988776654432221111 1122111111 0112233332100 0011111 1344443
Q ss_pred C-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 746 T-SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 746 ~-~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
. +.++|++||.-- +|+.. ...++.+.+.|..||++.++.+
T Consensus 79 ~~~~dvViIDEaqf-l~~~~-----v~~l~~l~~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 79 EEDTEVIAIDEVQF-FDDEI-----VEIVNKIAESGRRVICAGLDMD 119 (191)
T ss_dssp CTTCSEEEECSGGG-SCTHH-----HHHHHHHHHTTCEEEEEECSBC
T ss_pred hccCCEEEEECCCC-CCHHH-----HHHHHHHHhCCCEEEEEecccc
Confidence 3 479999999644 66532 2245555666999999988653
No 259
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.71 E-value=0.089 Score=57.21 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
+++++++|+||+||||++..+++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 260
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.69 E-value=0.045 Score=61.84 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|.||.|+|||++.+.|+..
T Consensus 150 ~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999999999654
No 261
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.68 E-value=0.17 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+.|+||.|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999997653
No 262
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.63 E-value=0.062 Score=58.19 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
++|+||.|+||||+.+.++..+
T Consensus 70 vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998765
No 263
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.62 E-value=0.12 Score=60.49 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
|++++|.|+.|+|||||+-+++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH
Confidence 67899999999999999999876543
No 264
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.62 E-value=0.097 Score=54.43 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=33.4
Q ss_pred CCCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHHhcCcEEEEeccCh
Q 002090 745 TTSRSLVLIDEICR----GTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 790 (968)
Q Consensus 745 a~~~~LlLlDEp~~----GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~ 790 (968)
..+++++++|-.+. .-+......+...+....++.++++++++|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 46789999997542 22444555666777777788899999999864
No 265
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.55 E-value=0.032 Score=53.63 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.4
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
+.|+||.|+|||++.+.|+.
T Consensus 27 vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999965
No 266
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.53 E-value=0.036 Score=62.57 Aligned_cols=123 Identities=11% Similarity=-0.006 Sum_probs=60.7
Q ss_pred eEEEE--EecCCCCcchHHHHHHhHHHhh-------hcCceeccCc--CCcchHHHHHhhcCCCCCccCCccchHHHHHH
Q 002090 669 SLFLL--TGPNGGGKSSLLRSICAASLLG-------ICGLMVPAES--ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 737 (968)
Q Consensus 669 ~~~~I--~GpNGsGKSTllk~i~gl~~la-------~~g~~vp~~~--~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~ 737 (968)
..+.| +||.|+||||+++.++....-. ....++.+.. .....+..++..++.... ..+. ....-...
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~ 128 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ-VRGA-PALDILKA 128 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC-CTTC-CHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCC-CHHHHHHH
Confidence 45677 9999999999999997654221 1112333211 112334455555543211 0111 11111233
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHHh-------cCcEEEEeccChhhh
Q 002090 738 IRSIVTATTSRSLVLIDEICRGTETA-KGTCIAGSIIETLDN-------IGCLGIVSTHLHGIF 793 (968)
Q Consensus 738 ~~~il~~a~~~~LlLlDEp~~GlD~~-~~~~i~~~ll~~l~~-------~g~~vl~~TH~~el~ 793 (968)
+...+.....|-+|++||.-.-.+.. ........+++.+.+ .+..+|++|...++.
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~ 192 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRAL 192 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHH
T ss_pred HHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHH
Confidence 44444444668899999974321100 001222334444432 345577788766543
No 267
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.53 E-value=0.17 Score=58.32 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=24.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL 694 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l 694 (968)
|++++|.|+.|+|||||+-.++.....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 789999999999999999999876544
No 268
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.51 E-value=0.015 Score=65.86 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|..++|+|+||+|||||+++++|.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 678999999999999999999984
No 269
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.49 E-value=0.011 Score=73.38 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
++.++|+||+|+||||+.|++++..
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999999874
No 270
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.091 Score=60.09 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=57.0
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHH-HHHHHHHH--HHhCCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV-EMSEIRSI--VTATTS 747 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~-~~~~~~~i--l~~a~~ 747 (968)
+++.||.|+|||++.|+||+-. |..+. .+...+-. +.+.+ ..+.+..+ .+....
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~-----~~~f~--------------~v~~s~l~----~~~vGese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQT-----NATFL--------------KLAAPQLV----QMYIGEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH-----TCEEE--------------EEEGGGGC----SSCSSHHHHHHHHHHHHHHHHC
T ss_pred eEEECcCCCCHHHHHHHHHHHh-----CCCEE--------------EEehhhhh----hcccchHHHHHHHHHHHHHhcC
Confidence 7899999999999999998752 32110 00000101 11111 12223333 233567
Q ss_pred CcEEEEeCCC-----CCCCH----HHHHHHHHHHHHHHHh----cCcEEEEeccChhhhhccc
Q 002090 748 RSLVLIDEIC-----RGTET----AKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 748 ~~LlLlDEp~-----~GlD~----~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el~~~~~ 797 (968)
|.+|++||.- ++-.. .........++..+.. .+..||.+|...+..+-+.
T Consensus 275 P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~Al 337 (434)
T 4b4t_M 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPAL 337 (434)
T ss_dssp SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTT
T ss_pred CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhH
Confidence 9999999962 21111 1222333555555532 3568888999887765443
No 271
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.43 E-value=0.019 Score=57.51 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+.+++|+|++||||||+.+.++...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998764
No 272
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.38 E-value=0.017 Score=57.68 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~g 690 (968)
|.+++|+|++||||||+.+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999974
No 273
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.37 E-value=0.02 Score=63.00 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-+.|.||.|+|||++.+.++..
T Consensus 53 ~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4799999999999999999764
No 274
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.32 E-value=0.096 Score=61.08 Aligned_cols=101 Identities=19% Similarity=0.300 Sum_probs=52.8
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCc-eeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCCc
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGL-MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 749 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~-~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~~ 749 (968)
+.|+||.|+|||++.+.|+... +. |+. +. ...+...+ .+.....++..... +....|.
T Consensus 241 vLL~GppGtGKT~lAraia~~~-----~~~fv~-----vn-~~~l~~~~---------~g~~~~~~~~~f~~-A~~~~p~ 299 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANET-----GAFFFL-----IN-GPEIMSKL---------AGESESNLRKAFEE-AEKNAPA 299 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC-----SSEEEE-----EE-HHHHHTSC---------TTHHHHHHHHHHHH-HHHTCSE
T ss_pred EEEECcCCCCHHHHHHHHHHHh-----CCCEEE-----EE-chHhhhhh---------cchhHHHHHHHHHH-HHhcCCc
Confidence 7899999999999999996542 21 111 11 11222110 11111112221111 1235689
Q ss_pred EEEEeCCC------CCCCHHHHHHHHHHHHHHHHh----cCcEEEEeccChhh
Q 002090 750 LVLIDEIC------RGTETAKGTCIAGSIIETLDN----IGCLGIVSTHLHGI 792 (968)
Q Consensus 750 LlLlDEp~------~GlD~~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el 792 (968)
+|+|||.- ...+......+...+++.+.. .+..+|.+|+..+.
T Consensus 300 iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp EEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred EEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 99999981 111122333444566665542 24677778887654
No 275
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.30 E-value=0.055 Score=57.67 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-+.|+||.|+||||+.+.++..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999775
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.20 E-value=0.019 Score=56.31 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+||.||||||+.+.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 277
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.17 E-value=0.063 Score=59.90 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
-++|.||.|+||||+.+.++...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999999999998753
No 278
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.14 E-value=0.23 Score=66.45 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=67.5
Q ss_pred EeeceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCC-CCcc-CCccchHHHHHHHHHH
Q 002090 665 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPA-DGKSSFQVEMSEIRSI 741 (968)
Q Consensus 665 i~lg~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~-~~~s~fs~~~~~~~~i 741 (968)
+.-|+++.|.||.|+|||||...++...... ....|+-.+...-+. ...+++.. +++. ....+. .++.+....
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~I~~~~~~-e~il~~~~~ 455 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTG-EQALEICDA 455 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEECCSSH-HHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH---HHHHcCCCHHHeEEeCCCCH-HHHHHHHHH
Confidence 4447899999999999999999997765432 122344443322221 13344432 1111 111111 222233322
Q ss_pred HHhCCCCcEEEEeCCCCCCC-HH------------HHHHHH---HHHHHHHHhcCcEEEEeccChh
Q 002090 742 VTATTSRSLVLIDEICRGTE-TA------------KGTCIA---GSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 742 l~~a~~~~LlLlDEp~~GlD-~~------------~~~~i~---~~ll~~l~~~g~~vl~~TH~~e 791 (968)
+....++++|++|....-.. +. ....+. ..+...+++.+++||+++|-..
T Consensus 456 lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~ 521 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 521 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 22356899999999987653 10 112222 2233334678999999999644
No 279
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.14 E-value=0.17 Score=67.58 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=63.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhh-hcCceeccCcCCcchHHHHHhhcCCC-CCcc-CCccchHHHHHHHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPA-DGKSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la-~~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~-~~~s~fs~~~~~~~~il~~ 744 (968)
++.+.|.||.|+|||||...++.-.... ....|+..+...-+.. ...+|.. +.+. ....+ +....++..-+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~~~~-~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDT-GEQALEICDALAR 1502 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEECCSS-HHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchhceeecCCh-HHHHHHHHHHHHh
Confidence 6889999999999999999986543321 1123444444332322 3334421 1111 11111 1111222222222
Q ss_pred CCCCcEEEEeCCCCCCCHHH------------H----HHHHHHHHHHHHhcCcEEEEeccC
Q 002090 745 TTSRSLVLIDEICRGTETAK------------G----TCIAGSIIETLDNIGCLGIVSTHL 789 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~------------~----~~i~~~ll~~l~~~g~~vl~~TH~ 789 (968)
...|++|++||..+-+-..+ + ..++..+...+.++++++|++-.-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 46899999999853332110 2 233456666667788888877543
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.14 E-value=0.022 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+++|+||+|||||||++.+.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998763
No 281
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.1 Score=59.34 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=58.8
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHH-HHHHHHHHH--HhCC
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV-EMSEIRSIV--TATT 746 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~-~~~~~~~il--~~a~ 746 (968)
-+++.||.|+|||++.|+||+-. +..+. .+...+-. +.+.+ ..+.+..+. +...
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~-----~~~fi--------------~v~~s~l~----sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQT-----SATFL--------------RIVGSELI----QKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHH-----TCEEE--------------EEESGGGC----CSSSSHHHHHHHHHHHHHHHT
T ss_pred CCceECCCCchHHHHHHHHHHHh-----CCCEE--------------EEEHHHhh----hccCchHHHHHHHHHHHHHhc
Confidence 37999999999999999998753 22110 01111111 11111 122233332 3356
Q ss_pred CCcEEEEeCCCCCC----------CHHHHHHHHHHHHHHHHh----cCcEEEEeccChhhhhccc
Q 002090 747 SRSLVLIDEICRGT----------ETAKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 747 ~~~LlLlDEp~~Gl----------D~~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el~~~~~ 797 (968)
.|.+|++||.-+-. +. ........++..+.. .+..||.+|...+..+-+.
T Consensus 275 aP~IIfiDEiDai~~~R~~~~~~~~~-~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpAL 338 (437)
T 4b4t_I 275 APSIVFIDEIDAIGTKRYDSNSGGER-EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPAL 338 (437)
T ss_dssp CSEEEEEEEESSSSCCCSCSSCSSCC-HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTS
T ss_pred CCcEEEEehhhhhcccCCCCCCCccH-HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHH
Confidence 79999999975321 22 223333555555532 3568899999888766544
No 282
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.05 E-value=0.093 Score=60.47 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|.||.|+||||+.+.|+..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999765
No 283
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.05 E-value=0.026 Score=65.14 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.-++|.||.|+|||++.+.++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999865
No 284
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.02 E-value=0.026 Score=57.94 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
|.+++|+|++||||||+.+.++...-
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999988653
No 285
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.99 E-value=0.022 Score=63.48 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred EEEEEecCCCCcchHHHHHHhHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
+++|+|++|+|||||++.+++...
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999998653
No 286
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=93.96 E-value=0.011 Score=69.52 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=24.4
Q ss_pred eEee-ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 664 TVDM-QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 664 ~i~l-g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++| ..+.+|+|+|||||||+|.+|.++.
T Consensus 55 ~l~f~~g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 55 ELELGGGFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp EEECCCSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred EEecCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455 3599999999999999999998873
No 287
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.94 E-value=0.022 Score=55.71 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|++|+|||||++.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999764
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.91 E-value=0.024 Score=60.16 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|||||||||+.+.++.-
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999999764
No 289
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.82 E-value=0.075 Score=59.05 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
..++|+||.|+||||+++.++...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999997654
No 290
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.81 E-value=0.071 Score=66.65 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=49.6
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCc--cCCccchHHHHHHHHHHHHhCCCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP--ADGKSSFQVEMSEIRSIVTATTSR 748 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~--~~~~s~fs~~~~~~~~il~~a~~~ 748 (968)
++|+||+|+||||+++.++..+.-. .+|........+ .+...... ......+...++++...+.....+
T Consensus 194 vlL~G~pG~GKT~la~~la~~l~~~----~~p~~l~~~~~~-----~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~ 264 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQRIVKG----DVPEGLKGKRIV-----SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE 264 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHHT----CSCTTSTTCEEE-----EECC-----------CHHHHHHHHHHHHHTTCSS
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcC----CCchhhcCCeEE-----EeehHHhhccCccchHHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999998865321 122111000000 00000000 001112222333333333334567
Q ss_pred cEEEEeCCCCCC---CHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 749 SLVLIDEICRGT---ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 749 ~LlLlDEp~~Gl---D~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
.+|++||.-.-. +..........+...+...+..+|.+|...+.
T Consensus 265 ~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 265 VILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY 311 (854)
T ss_dssp EEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred eEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 899999985432 12122333334444455555667777775543
No 291
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.79 E-value=0.026 Score=56.60 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~g 690 (968)
+..++|+|+.||||||+.+.++-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999965
No 292
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.78 E-value=0.026 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|+.||||||+.|.++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999653
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.69 E-value=0.11 Score=59.31 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
+++++|+||||+||||++..+++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999998764
No 294
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.68 E-value=0.028 Score=58.79 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|++||||||+.+.++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999763
No 295
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.60 E-value=0.19 Score=54.54 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+||.|+||||+++.++..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 296
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.58 E-value=0.032 Score=55.05 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..++|+|++|+|||||++.+++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999763
No 297
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.16 Score=58.23 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=57.1
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHH-HHHHHHHHH--HhCCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV-EMSEIRSIV--TATTS 747 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~-~~~~~~~il--~~a~~ 747 (968)
+++.||.|+|||++.|+||+-. +..+. .+...+- .+.+.+ ..+.+..+. +....
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~-----~~~fi--------------~vs~s~L----~sk~vGesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRT-----DATFI--------------RVIGSEL----VQKYVGEGARMVRELFEMARTKK 302 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHH-----TCEEE--------------EEEGGGG----CCCSSSHHHHHHHHHHHHHHHTC
T ss_pred eEeeCCCCCcHHHHHHHHHhcc-----CCCeE--------------EEEhHHh----hcccCCHHHHHHHHHHHHHHhcC
Confidence 7899999999999999998753 22110 0000010 111111 122233332 33578
Q ss_pred CcEEEEeCCCCCCCH---------HHHHHHHHHHHHHHHh----cCcEEEEeccChhhhhcc
Q 002090 748 RSLVLIDEICRGTET---------AKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFSLP 796 (968)
Q Consensus 748 ~~LlLlDEp~~GlD~---------~~~~~i~~~ll~~l~~----~g~~vl~~TH~~el~~~~ 796 (968)
|.+|++||.-+-... .........++..+.. .+..+|.+|...+..+-+
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpA 364 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPA 364 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHH
T ss_pred CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChh
Confidence 999999998643211 1122233445555532 356788899987776543
No 298
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.43 E-value=0.081 Score=62.15 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.++|+||.|+||||+++.++...
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999997653
No 299
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.42 E-value=0.036 Score=61.51 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
+.+++|+|+||+||||+++.+++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999988753
No 300
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.41 E-value=0.032 Score=55.38 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999763
No 301
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.39 E-value=0.03 Score=62.59 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
..+.|+||.|+||||+++.++...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998754
No 302
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.30 E-value=0.034 Score=57.14 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|++||||||+.+.++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.28 E-value=0.03 Score=56.61 Aligned_cols=21 Identities=38% Similarity=0.817 Sum_probs=18.5
Q ss_pred eEEEEEecCCCCcchHHHHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSIC 689 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~ 689 (968)
+.++|+||+|+||||+++.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999874
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.17 E-value=0.032 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+||+||||||+.+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 305
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.16 E-value=0.035 Score=54.15 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=17.9
Q ss_pred EEEEEecCCCCcchHHHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSI 688 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i 688 (968)
+++|+||.||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999988
No 306
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.14 E-value=0.039 Score=54.39 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|++||||||+.+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999965
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.09 E-value=0.039 Score=55.01 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+||.||||||+.+.++-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999965
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.98 E-value=0.045 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~g 690 (968)
+.+++|+|+.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999965
No 309
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.84 E-value=0.042 Score=59.92 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|+||+|||||++.+.|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999886
No 310
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.80 E-value=0.035 Score=55.28 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999764
No 311
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.77 E-value=0.037 Score=58.59 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+||+||||||+.+.++..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.74 E-value=0.045 Score=55.15 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+|+.||||||+.+.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5799999999999999999764
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.69 E-value=0.048 Score=58.99 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+||+||||||+.+.++.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 314
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.65 E-value=0.046 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.|-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4799999999999999999764
No 315
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.55 E-value=0.088 Score=53.44 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=56.9
Q ss_pred eeeeEee-ceEEEEEecCCCCcchHHHHHHhHHHhhh-cCcee-ccCcCCcchHHHHHhhcCCCCC--ccCCccchHHHH
Q 002090 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMV-PAESASIPYFDAIMLHMKSYDS--PADGKSSFQVEM 735 (968)
Q Consensus 661 v~~~i~l-g~~~~I~GpNGsGKSTllk~i~gl~~la~-~g~~v-p~~~~~~~~~~~i~~~~~~~d~--~~~~~s~fs~~~ 735 (968)
||...+. |++..|+||-||||||.|-...+....+. ...++ |+-..... +.+..++|..-. .......|..
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~-- 87 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRDVAQ-- 87 (195)
T ss_dssp -------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHHHHSEEEEESSGGGGHH--
T ss_pred cccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccCCcccceecCCHHHHHH--
Confidence 3444433 88999999999999955444444444332 22222 33211211 112233321100 0111111211
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhh
Q 002090 736 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 793 (968)
Q Consensus 736 ~~~~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~ 793 (968)
...+.++|++||.===-| + ..+++.+.+.|+.||++.++.++-
T Consensus 88 --------~~~~~DvIlIDEaQFfk~------~-ve~~~~L~~~gk~VI~~GL~~DF~ 130 (195)
T 1w4r_A 88 --------EALGVAVIGIDEGQFFPD------I-VEFCEAMANAGKTVIVAALDGTFQ 130 (195)
T ss_dssp --------HHHTCSEEEESSGGGCTT------H-HHHHHHHHHTTCEEEEEEESBCTT
T ss_pred --------hccCCCEEEEEchhhhHH------H-HHHHHHHHHCCCeEEEEecccccc
Confidence 123469999999722112 1 233466777899999999987764
No 316
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.55 E-value=0.056 Score=56.65 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
-+++|+||+||||||+.+.++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 317
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.54 E-value=0.057 Score=60.49 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL 694 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l 694 (968)
|+.++|+||+|+|||||++.|+..+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 789999999999999999999887643
No 318
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.53 E-value=0.17 Score=57.93 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
.+++|+|++|+||||+...+++...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999988653
No 319
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.45 E-value=0.033 Score=56.81 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++|.|++||||||+++.++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997654
No 320
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=92.37 E-value=0.19 Score=45.13 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=55.0
Q ss_pred CcceeEEeecCCc-cccccccCchhhHHHhhhccc-C-------cccceeEEEeeCCchhHHHHHHHHHhhhhhcccccc
Q 002090 875 GASCVYVMLRPDK-KLYIGQTDDLDGRIRAHRGKE-G-------MQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLA 945 (968)
Q Consensus 875 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~l~ 945 (968)
..+=||.+...++ -+|||.+.||..|+.+|.... . .+...+-|+.+.+.-.|--+|.-+|++++|. ||..
T Consensus 14 ~~pGVY~~~d~~g~vlYVGKAknLr~Rv~syf~~~~~~k~~~m~~~~~~i~~~~t~sE~eAlllE~~lIk~~~P~-yN~~ 92 (99)
T 1yd6_A 14 EQPGCYLMKDKHGTVIYVGKAKSLKERVRSYFTGTHDGKTQRLVEEIADFEYIVTSSNAEALILEMNLIKKHDPK-YNVM 92 (99)
T ss_dssp SSCEEEEEECSSCCEEEEEEESCHHHHHHGGGSSCCCHHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHHHHCCH-HHHH
T ss_pred CCCeEEEEEcCCCCEEEEecCcCHHHHHHHHcccCCChHHHHHHHheeEEEEEEECCHHHHHHHHHHHHHHhCCc-chhc
Confidence 3557899987554 699999999999999998654 1 1345566677778788889999999999863 5544
Q ss_pred cccc
Q 002090 946 NIAD 949 (968)
Q Consensus 946 ~~~~ 949 (968)
...|
T Consensus 93 lkdd 96 (99)
T 1yd6_A 93 LKDD 96 (99)
T ss_dssp TCC-
T ss_pred ccCC
Confidence 4443
No 321
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.32 E-value=0.065 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++|+|++||||||++..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999987654
No 322
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.28 E-value=0.23 Score=51.13 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=56.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHhhhcCce--eccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhC
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM--VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 745 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~--vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a 745 (968)
|.+..++||=|+||||.+-.++--..-+..-.+ -|......+. ..+..++|..-.. ...... ..++..+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge-~~i~s~~g~~~~a-~~~~~~-------~~~~~~~ 98 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSE-EDVVSHNGLKVKA-VPVSAS-------KDIFKHI 98 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCE-EECSSG-------GGGGGGC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchH-HHHHhhcCCeeEE-eecCCH-------HHHHHHH
Confidence 688999999999999988776554433322222 2332222111 2345555433111 011111 1233333
Q ss_pred C-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 746 T-SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 746 ~-~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
. +.++|++||.-- +|+.. . ..++.+.+.|..||++-++.++
T Consensus 99 ~~~~dvViIDEaQF-~~~~~----V-~~l~~l~~~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 99 TEEMDVIAIDEVQF-FDGDI----V-EVVQVLANRGYRVIVAGLDQDF 140 (214)
T ss_dssp CSSCCEEEECCGGG-SCTTH----H-HHHHHHHHTTCEEEEEECSBCT
T ss_pred hcCCCEEEEECccc-CCHHH----H-HHHHHHhhCCCEEEEEeccccc
Confidence 3 479999999855 55522 2 3455556679999999996554
No 323
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.27 E-value=0.064 Score=54.25 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+|++||||||+.+.++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999764
No 324
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.25 E-value=0.059 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|+.||||||+.+.++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.23 E-value=0.052 Score=53.85 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.7
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|+.||||||+.+.++-
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 326
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.23 E-value=0.14 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|.||.|+||||+..+++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988765
No 327
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.16 E-value=0.21 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=19.7
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+.|+||.|+||||+.+.++...
T Consensus 53 vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998754
No 328
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.09 E-value=0.058 Score=59.61 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.6
Q ss_pred ceE--EEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSL--FLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~--~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
|++ ++++||+|+||||+++.+++.+.
T Consensus 44 g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 455 89999999999999999988753
No 329
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=92.01 E-value=0.22 Score=44.55 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=52.9
Q ss_pred CcceeEEeecCCccccccccCchhhHHHhhhcccC-------cccceeEEEeeCCchhHHHHHHHHHhhhhhcccccccc
Q 002090 875 GASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEG-------MQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANI 947 (968)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~l~~~ 947 (968)
..+=||.+...+.-+|||.+.||..|+.+|..... .+...+-|+.+.+...|--+|..+|++++| -||....
T Consensus 14 ~~pGVY~~~d~g~vlYVGKAknLr~Rv~syf~~~~~k~~~~~~~~~~i~~~~t~sE~eAlllE~~lIk~~~P-~yN~~lk 92 (96)
T 1yd0_A 14 EEPGVYIFKNKGVPIYIGKAKRLSNRLRSYLNPQTEKVFRIGEEADELETIVVMNEREAFILEANLIKKYRP-KYNVRLK 92 (96)
T ss_dssp SSCEEEEEEETTEEEEEEEESSHHHHHHGGGSCSSHHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHHHHCC-TTCC---
T ss_pred CCCeEEEEECCCeEEEEecCcCHHHHHHHHccCCCHHHHHHHHhccEEEEEEECCHHHHHHHHHHHHHHhCC-Cchhhcc
Confidence 34568988884456999999999999999987531 134456667787888888999999999987 3554443
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.93 E-value=0.066 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=15.7
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|+.||||||+.+.++-
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 331
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.91 E-value=0.22 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..+.+.||.|+||||+.+.++..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH
Confidence 46788899999999999999654
No 332
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.90 E-value=0.17 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-+.|+||.|+|||++.+.++..
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 4789999999999999999764
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.89 E-value=0.072 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.7
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|+.||||||+.+.++-
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 334
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.86 E-value=0.07 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+|+.||||||+.+.++--
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 335
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.22 Score=54.63 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=59.9
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhh-hcC-------ceeccCc--CCcchHHHHHhhcCCCCCccCCccchHHHHHHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLG-ICG-------LMVPAES--ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la-~~g-------~~vp~~~--~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~ 739 (968)
.+.|.||.|+|||++.+.++.-+.-. ..+ .++-+.. .....+..++..+.-. ....+. .+..+.
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~-~~~~~~-----~~~~L~ 120 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE-NLCGDI-----SLEALN 120 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC-C--CCC-----CHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC-CCCchH-----HHHHHH
Confidence 36899999999999999998765321 111 0111111 1112334455555322 111111 122333
Q ss_pred HHHHh----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEeccChhhh
Q 002090 740 SIVTA----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN--IGCLGIVSTHLHGIF 793 (968)
Q Consensus 740 ~il~~----a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~--~g~~vl~~TH~~el~ 793 (968)
.++.. ...+-+++|||.-.=.+ ..+...++++... ....+|.++..+++.
T Consensus 121 ~~f~~~~~~~~~~~ii~lDE~d~l~~----q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 121 FYITNVPKAKKRKTLILIQNPENLLS----EKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHSCGGGSCEEEEEEECCSSSCC----THHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHhhhccCCceEEEEecHHHhhc----chHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 33333 35678999999866552 3344556654332 235667778776653
No 336
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.76 E-value=0.071 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+|+.||||||+.+.++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 337
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.76 E-value=0.073 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..++|+||.||||||+.+.++-.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999653
No 338
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.76 E-value=0.1 Score=60.56 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=47.4
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcc--hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP--YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~--~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~ 748 (968)
++|+||+|+||||+.+.++..+.- ..+|......+ .++. + ......|...++.+...+. ...+
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~----~~~p~~l~~~~~~~l~~-----~-----~~~~g~~e~~~~~~~~~~~-~~~~ 268 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIIN----NEVPEILRDKRVMTLDM-----G-----TKYRGEFEDRLKKVMDEIR-QAGN 268 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHS----SCSCTTTSSCCEECC--------------------CTTHHHHHHHHH-TCCC
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh----CCCChhhcCCeEEEeeC-----C-----ccccchHHHHHHHHHHHHH-hcCC
Confidence 589999999999999999876432 23443211111 1110 0 0111112222233333222 2468
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 749 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 749 ~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.++++| ...| ....+...+.+....+|.+|...+
T Consensus 269 ~iLfiD---~~~~------a~~~L~~~L~~g~v~vI~at~~~e 302 (468)
T 3pxg_A 269 IILFID---AAID------ASNILKPSLARGELQCIGATTLDE 302 (468)
T ss_dssp CEEEEC---C--------------CCCTTSSSCEEEEECCTTT
T ss_pred eEEEEe---Cchh------HHHHHHHhhcCCCEEEEecCCHHH
Confidence 899999 2222 123334444444578888888665
No 339
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.67 E-value=0.08 Score=52.99 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=19.6
Q ss_pred eeeeEee---ceEEEEEecCCCCcchHHHHHHh
Q 002090 661 VHNTVDM---QSLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 661 v~~~i~l---g~~~~I~GpNGsGKSTllk~i~g 690 (968)
+++++++ .-.++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 4455555 23679999999999999999865
No 340
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.58 E-value=0.44 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-+.|+||.|+|||++.+.|+..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHHh
Confidence 4789999999999999999764
No 341
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.55 E-value=0.22 Score=51.22 Aligned_cols=110 Identities=23% Similarity=0.161 Sum_probs=54.5
Q ss_pred ceEEEEEecCCCCcch-HHHHHHhHHHhhh-cCceeccCcCCcchHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHh-
Q 002090 668 QSLFLLTGPNGGGKSS-LLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA- 744 (968)
Q Consensus 668 g~~~~I~GpNGsGKST-llk~i~gl~~la~-~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~- 744 (968)
|.+.+|+||-|||||| |++.+--...-.+ ...+-|+...... ...|..++|..-... ..... .+ +...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~-~~~I~Sr~G~~~~a~-~v~~~-~d------i~~~i 98 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYH-KEKVVSHNGNAIEAI-NISKA-SE------IMTHD 98 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------CBTTBCCEEE-EESSG-GG------GGGSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcch-hhhHHHhcCCceeeE-EeCCH-HH------HHHHH
Confidence 7899999999999999 7777643322221 1122233322211 124556665432211 00100 01 1111
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhh
Q 002090 745 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 792 (968)
Q Consensus 745 a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el 792 (968)
..+.++|++||.== +|+ .+.. .+..+.+.|..||++-=+.++
T Consensus 99 ~~~~dvV~IDEaQF-f~~----~~v~-~l~~la~~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 99 LTNVDVIGIDEVQF-FDD----EIVS-IVEKLSADGHRVIVAGLDMDF 140 (219)
T ss_dssp CTTCSEEEECCGGG-SCT----HHHH-HHHHHHHTTCEEEEEEESBCT
T ss_pred hcCCCEEEEechhc-CCH----HHHH-HHHHHHHCCCEEEEeeccccc
Confidence 35789999999632 333 1222 334445679999888666554
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.51 E-value=0.083 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.309 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|+.||||||+.+.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999764
No 343
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.50 E-value=0.19 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+.|.||.|+||||+.+.++..+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999997654
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.48 E-value=0.084 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|+.||||||+.+.++-.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999653
No 345
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.47 E-value=0.081 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|.+++|+|+.||||||+.+.++-.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999653
No 346
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.37 E-value=0.087 Score=53.49 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|+.||||||+.+.++-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999754
No 347
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.37 E-value=0.4 Score=56.67 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=61.7
Q ss_pred eEEEEEecCCCCcchHHHHHHh---HHHhh--hcCceeccCcC----CcchHHHHHhhcCCCCCccCCccchHHHHHHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA---ASLLG--ICGLMVPAESA----SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 739 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g---l~~la--~~g~~vp~~~~----~~~~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~ 739 (968)
.+++|+|+-|.|||||.+.++- ..... ....+|..... .......++..++...........-.....++.
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~ 232 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLK 232 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHH
Confidence 6799999999999999999873 11111 12234432221 223345666666654321111110111122332
Q ss_pred HHHHh--CCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhhc
Q 002090 740 SIVTA--TTS-RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 795 (968)
Q Consensus 740 ~il~~--a~~-~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~~ 795 (968)
..+.. ..+ +-||+||-.-. .+.. .+ . ...|+.||+||-+...+..
T Consensus 233 ~~l~~~L~~~kr~LlVLDdv~~----~~~~--~~--~---~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 233 RMICNALIDRPNTLFVFDDVVQ----EETI--RW--A---QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHHHTTSTTEEEEEEEECC----HHHH--HH--H---HHTTCEEEEEESBGGGGGG
T ss_pred HHHHHHHcCCCcEEEEEECCCC----chhh--cc--c---ccCCCEEEEEcCCHHHHHH
Confidence 22222 454 78999997654 1211 11 1 1268999999998776543
No 348
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.18 E-value=0.079 Score=57.40 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=17.0
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+||.||||||+.+.++..
T Consensus 7 iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 349
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.02 E-value=0.082 Score=59.25 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+++|+|+||+|||||++.+++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999997753
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.92 E-value=0.1 Score=53.03 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|+.||||||+.+.++-.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999764
No 351
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.78 E-value=0.092 Score=56.03 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|++|+|||||++.+.|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999775
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.76 E-value=0.11 Score=52.11 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|+.||||||+.+.++-.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999653
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.72 E-value=0.11 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~g 690 (968)
..+++|+|+.||||||+.+.++-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999965
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.64 E-value=0.093 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|+.||||||+.+.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999653
No 355
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.58 E-value=0.044 Score=55.39 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999854
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.58 E-value=0.11 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+|+.||||||+.+.++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 357
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.51 E-value=0.37 Score=60.14 Aligned_cols=24 Identities=38% Similarity=0.726 Sum_probs=20.9
Q ss_pred EEEEEecCCCCcchHHHHHHhHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
.+.|+||+|+|||++.+.|+....
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 368999999999999999988653
No 358
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.51 E-value=0.095 Score=60.24 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+||+|||||++.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.50 E-value=0.11 Score=53.07 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 360
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.39 E-value=0.11 Score=57.68 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=20.6
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
++|+||+|+||||+.+.+++.+
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999875
No 361
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.39 E-value=0.14 Score=57.88 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
+.-++|+||+||||||+++.+++...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999988764
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.26 E-value=0.12 Score=50.38 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=19.2
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999965
No 363
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.20 E-value=0.43 Score=58.73 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=58.0
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchH-HHHHHHHHHHHh--CCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ-VEMSEIRSIVTA--TTS 747 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs-~~~~~~~~il~~--a~~ 747 (968)
+++.||.|+|||++.|.||.- .|..+. .+.. ..+. +.+. ...+.+..+... ...
T Consensus 241 ILL~GPPGTGKT~LAraiA~e-----lg~~~~----~v~~-~~l~-------------sk~~gese~~lr~lF~~A~~~~ 297 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANE-----TGAFFF----LING-PEIM-------------SKLAGESESNLRKAFEEAEKNA 297 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTT-----TTCEEE----EEEH-HHHH-------------SSCTTHHHHHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHH-----hCCeEE----EEEh-HHhh-------------cccchHHHHHHHHHHHHHHHcC
Confidence 789999999999999999764 232111 0111 1111 1111 122334444443 567
Q ss_pred CcEEEEeCCCCC------CCHHHHHHHHHHHHHHHH----hcCcEEEEeccChhhhhccc
Q 002090 748 RSLVLIDEICRG------TETAKGTCIAGSIIETLD----NIGCLGIVSTHLHGIFSLPL 797 (968)
Q Consensus 748 ~~LlLlDEp~~G------lD~~~~~~i~~~ll~~l~----~~g~~vl~~TH~~el~~~~~ 797 (968)
|++|++||.-+= .+......+...++..+. ..+..||.+|...+..+-+.
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 999999997331 111122344455554443 23567888998877655433
No 364
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.08 E-value=0.47 Score=52.22 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=56.5
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCcc-CC---ccchHHHHHHHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA-DG---KSSFQVEMSEIRSIVTA 744 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~-~~---~s~fs~~~~~~~~il~~ 744 (968)
..+.++||.|.||||+.+.++..+.-.......|... ...+..+.... ..|... .. .+.... .++..+...
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~--c~~c~~~~~~~-~~d~~~~~~~~~~~~~~i--~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGH--CRGCQLMQAGT-HPDYYTLAPEKGKNTLGV--DAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSC--SHHHHHHHHTC-CTTEEEECCCTTCSSBCH--HHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCC--CHHHHHHhcCC-CCCEEEEeccccCCCCCH--HHHHHHHHH
Confidence 3589999999999999999977543111000111111 11121111110 001000 00 112222 223333333
Q ss_pred ------CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CcEEEEeccChh
Q 002090 745 ------TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI--GCLGIVSTHLHG 791 (968)
Q Consensus 745 ------a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~--g~~vl~~TH~~e 791 (968)
..++.++|+||.-.- +... ..++++.+.+. ++.+|++|++.+
T Consensus 100 ~~~~~~~~~~kvviIdead~l-~~~a----~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALL-TDAA----ANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGB-CHHH----HHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred HhhccccCCcEEEEECchhhc-CHHH----HHHHHHHhcCCCCCeEEEEEeCChH
Confidence 245799999997543 3322 35567776552 467788888764
No 365
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.99 E-value=0.13 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|+.||||||+.+.++-
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 366
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=89.97 E-value=0.22 Score=58.66 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASL 693 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~ 693 (968)
..-++|.|..|||||+++++|..-+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999866443
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.96 E-value=0.13 Score=52.58 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.13 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999764
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.91 E-value=0.14 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|+.||||||+.+.++-
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 370
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.91 E-value=0.13 Score=57.25 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=23.2
Q ss_pred eeeeeEee-ceEEEEEecCCCCcchHHHHHHhH
Q 002090 660 AVHNTVDM-QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 660 ~v~~~i~l-g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++.++++ --.++|+|++|+|||||++.+.|.
T Consensus 25 ~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35555555 247899999999999999999884
No 371
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.75 E-value=0.44 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+.|.||.|+||||+.+.++..+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999997653
No 372
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.67 E-value=0.12 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|+.||||||+.+.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999653
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.64 E-value=0.13 Score=52.92 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+||.||||||+.+.++--
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999653
No 374
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=89.64 E-value=1.1 Score=52.93 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=59.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhHHH--hhh--cC-ceeccCcCC----cchHHHHHhhcCCCCCc-cCCccchHHHHHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAASL--LGI--CG-LMVPAESAS----IPYFDAIMLHMKSYDSP-ADGKSSFQVEMSEI 738 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~~--la~--~g-~~vp~~~~~----~~~~~~i~~~~~~~d~~-~~~~s~fs~~~~~~ 738 (968)
.+++|+||-|.|||||.+.++.-.. ... .+ .++...... +..+..+...++..... .........-...+
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l 227 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRL 227 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHH
Confidence 5789999999999999998864321 111 11 223222111 11122223333321111 11122222222334
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChhhhh
Q 002090 739 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 794 (968)
Q Consensus 739 ~~il~~a~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~el~~ 794 (968)
...+....+|-||+||..-. . + .++.+ ..|+.+|++|.+.....
T Consensus 228 ~~~l~~~~~~~LLVLDdv~~---~-~-------~l~~l-~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 228 RILMLRKHPRSLLILDDVWD---S-W-------VLKAF-DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHTCTTCEEEEEEECC---H-H-------HHHTT-CSSCEEEEEESCGGGGT
T ss_pred HHHHccCCCCeEEEEeCCCC---H-H-------HHHHh-cCCCeEEEECCCcHHHH
Confidence 44454444789999998742 1 1 12333 45789999998776543
No 375
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.60 E-value=0.51 Score=51.39 Aligned_cols=24 Identities=46% Similarity=0.479 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+||-|+|||||++.++.-
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999998643
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.60 E-value=0.15 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|||+.||||||+.+.++-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999653
No 377
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.59 E-value=0.14 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+|+.||||||+.+.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999653
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.46 E-value=0.16 Score=53.98 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|+.||||||+.+.++-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.35 E-value=0.15 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.7
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|+.||||||+.+.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 380
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.26 E-value=1.8 Score=43.77 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=32.8
Q ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHHh--cCcEEEEeccCh--hhhhcccccccc
Q 002090 746 TSRSLVLIDEICR----GTETAKGTCIAGSIIETLDN--IGCLGIVSTHLH--GIFSLPLKIKNA 802 (968)
Q Consensus 746 ~~~~LlLlDEp~~----GlD~~~~~~i~~~ll~~l~~--~g~~vl~~TH~~--el~~~~~~~~~~ 802 (968)
.+.+||||||++- |+=+. ..+++.+.+ .+..+|+++.+. ++.++++....+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~------~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem 177 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPL------EEVISALNARPGHQTVIITGRGCHRDILDLADTVSEL 177 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCH------HHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEEC
T ss_pred CCCCEEEEeCCCccccCCCCCH------HHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeee
Confidence 5689999999975 33321 234455544 367889999864 566666655443
No 381
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.19 E-value=0.16 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+.+++|+|+.||||||+.+.++-.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999653
No 382
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.17 E-value=0.16 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999753
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.14 E-value=0.16 Score=54.58 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCcchHHHHHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSIC 689 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~ 689 (968)
.+++|+|+.||||||+.+.++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 384
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.11 E-value=0.17 Score=48.21 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.5
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
++++|+.|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999965
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.10 E-value=0.17 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|+.||||||+.+.++-.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999653
No 386
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.06 E-value=0.33 Score=59.77 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.-++|+||.|+||||+++.++..+
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998764
No 387
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.00 E-value=0.13 Score=50.82 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|++|+|||||++.+.+
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999854
No 388
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.99 E-value=0.17 Score=49.38 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|+-||||||+.+.++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999653
No 389
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.95 E-value=0.17 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 378999999999999999965
No 390
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.83 E-value=0.12 Score=57.82 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=22.8
Q ss_pred eeeeeEeeceEEEEEecCCCCcchHHHHHHhH
Q 002090 660 AVHNTVDMQSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 660 ~v~~~i~lg~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+.++++|. ++|+|+||+|||||++.+.+.
T Consensus 31 ~~~~~~~~~--I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 31 SVKKGFEFT--LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHCCEEC--EEECCCTTSCHHHHHHHHTTC
T ss_pred eecCCCCEE--EEEEcCCCCCHHHHHHHHhCC
Confidence 344444442 699999999999999998654
No 391
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.61 E-value=0.19 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.7
Q ss_pred eEEEEEecCCCCcchHHHHHHh
Q 002090 669 SLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~g 690 (968)
.+++|+|++||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 392
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.48 E-value=0.2 Score=48.19 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.5
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
++|+|+.|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999999965
No 393
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.44 E-value=0.19 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3799999999999999999653
No 394
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.37 E-value=0.39 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAASLL 694 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~~l 694 (968)
|+..+|.||+|+|||||++.++.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 778999999999999999999876544
No 395
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.33 E-value=0.51 Score=56.48 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+.+++|+||.|+||||+++.+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998876554
No 396
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.32 E-value=0.2 Score=48.12 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.4
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
++|+|+.|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999865
No 397
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.30 E-value=0.13 Score=50.39 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=18.2
Q ss_pred EEEEEecCCCCcchHHHHHH
Q 002090 670 LFLLTGPNGGGKSSLLRSIC 689 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~ 689 (968)
.++|+|++|+|||||++.+.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999985
No 398
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.29 E-value=0.2 Score=47.90 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999965
No 399
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.28 E-value=0.21 Score=51.03 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999965
No 400
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.26 E-value=0.33 Score=55.98 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=20.4
Q ss_pred eeeeEee-ceEEEEEecCCCCcchHHHHHHh
Q 002090 661 VHNTVDM-QSLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 661 v~~~i~l-g~~~~I~GpNGsGKSTllk~i~g 690 (968)
++....+ ...++|+|+.|+|||||++.+.|
T Consensus 15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp --------CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCChhhcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3344444 24689999999999999999966
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.25 E-value=0.2 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999653
No 402
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.20 E-value=0.2 Score=48.31 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999965
No 403
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.19 E-value=0.21 Score=47.78 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999864
No 404
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.19 E-value=0.2 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 379999999999999999865
No 405
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.16 E-value=0.21 Score=48.20 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 379999999999999999865
No 406
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.99 E-value=0.17 Score=48.62 Aligned_cols=20 Identities=45% Similarity=0.574 Sum_probs=18.2
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
++|+|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999854
No 407
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.92 E-value=0.21 Score=49.32 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999855
No 408
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.85 E-value=0.22 Score=48.40 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999954
No 409
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.77 E-value=0.22 Score=52.19 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
+++|+||.||||||+.+.++-
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 410
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.76 E-value=0.2 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3799999999999999998653
No 411
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.74 E-value=0.24 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998664
No 412
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.72 E-value=0.21 Score=49.16 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.3
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
++|+|+.|+|||||++.+.+
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999854
No 413
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.68 E-value=0.56 Score=57.68 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.1
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
++++||.|+|||++.+.++...
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6899999999999999998764
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.67 E-value=0.22 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+||+||||||+.+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999999998764
No 415
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.65 E-value=0.23 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.4
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
++|+|+.|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999965
No 416
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.58 E-value=0.27 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCCcchHHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSIC 689 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~ 689 (968)
|..++|+||.|+|||||...++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999987774
No 417
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.57 E-value=0.22 Score=48.46 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999965
No 418
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.53 E-value=0.22 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|++|+|||||++.++|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999774
No 419
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.49 E-value=0.22 Score=48.05 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.4
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
++|+|+.|+|||||++.+.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999864
No 420
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=87.43 E-value=0.19 Score=56.65 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
+..++|+|+||+|||||++.+++.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999999765
No 421
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.33 E-value=0.25 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999954
No 422
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.13 E-value=0.27 Score=47.71 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999864
No 423
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.13 E-value=0.28 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|.+++|.|+.||||||.++.++-..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999996543
No 424
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.06 E-value=0.27 Score=47.24 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999865
No 425
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.03 E-value=0.36 Score=59.42 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=47.9
Q ss_pred EEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcc--hHHHHHhhcCCCCCccCCccchHHHHHHHHHHHHhCCCC
Q 002090 671 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP--YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 748 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~--~~~~i~~~~~~~d~~~~~~s~fs~~~~~~~~il~~a~~~ 748 (968)
++|+||.|+||||+.+.++..+.- ..+|....... .++. +. .....|...++.+...+. ...+
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~----~~~p~~l~~~~~~~~~~-----g~-----~~~G~~e~~l~~~~~~~~-~~~~ 268 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIIN----NEVPEILRDKRVMTLDM-----GT-----KYRGEFEDRLKKVMDEIR-QAGN 268 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHS----SCSCTTTSSCCEECC--------------------CTTHHHHHHHHH-TCCC
T ss_pred eEEECCCCCCHHHHHHHHHHHHhc----CCCChhhcCCeEEEecc-----cc-----cccchHHHHHHHHHHHHH-hcCC
Confidence 689999999999999999876421 12332211111 1111 10 011122223333333332 2578
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeccChh
Q 002090 749 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 791 (968)
Q Consensus 749 ~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~g~~vl~~TH~~e 791 (968)
.+|++| .+.|. ...+...+.+....+|.+|...+
T Consensus 269 ~iLfiD---~~~~~------~~~L~~~l~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 269 IILFID---AAIDA------SNILKPSLARGELQCIGATTLDE 302 (758)
T ss_dssp CEEEEC---C--------------CCCTTSSSCEEEEECCTTT
T ss_pred EEEEEc---CchhH------HHHHHHHHhcCCEEEEeCCChHH
Confidence 999999 22222 22334444455678888887666
No 426
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.03 E-value=1.4 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCcchHHHHHHhHH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
.+++|+|++|+||||++..++...
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998543
No 427
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.99 E-value=0.2 Score=48.72 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 379999999999999999854
No 428
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.90 E-value=0.26 Score=48.88 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 479999999999999999865
No 429
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.87 E-value=0.27 Score=48.26 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 379999999999999999965
No 430
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.76 E-value=0.28 Score=47.61 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999965
No 431
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.69 E-value=0.29 Score=48.01 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999865
No 432
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.65 E-value=0.28 Score=48.46 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999965
No 433
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.65 E-value=0.29 Score=46.89 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEEecCCCCcchHHHHHHh
Q 002090 671 FLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~g 690 (968)
++|+|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999965
No 434
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.62 E-value=0.28 Score=48.23 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999965
No 435
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.61 E-value=0.28 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999653
No 436
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.61 E-value=0.29 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+||+||||||+.+.++.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 437
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.60 E-value=0.29 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 479999999999999999965
No 438
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.55 E-value=0.3 Score=48.16 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999865
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.52 E-value=0.3 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+||+||||||+.+.++--
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999998653
No 440
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.45 E-value=0.29 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999764
No 441
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.43 E-value=0.29 Score=48.55 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.3
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999987754
No 442
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.40 E-value=0.32 Score=50.98 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|.+++|.|+.||||||+++.++...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997654
No 443
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.35 E-value=0.3 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999754
No 444
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.30 E-value=0.53 Score=46.79 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.9
Q ss_pred ceEEEEEecCCCCcchHHHHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSI 688 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i 688 (968)
|.-++|+|++|+||||+...+
T Consensus 16 G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHH
Confidence 678999999999999998766
No 445
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.22 E-value=0.33 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|+.||||||+.+.++--
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999754
No 446
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.16 E-value=0.3 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=18.6
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
|.+++|.||.||||||.++.++-.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999654
No 447
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.10 E-value=0.56 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcchHHHHHHhHH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
-+.|.||.|+|||++.+.++...
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGB
T ss_pred eeEeecCchHHHHHHHHHHHHHH
Confidence 47899999999999999997753
No 448
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.09 E-value=0.31 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999988653
No 449
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.06 E-value=0.34 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+++-
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999999999998765
No 450
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.00 E-value=0.32 Score=47.43 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999865
No 451
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.95 E-value=0.33 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 479999999999999999865
No 452
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.94 E-value=0.96 Score=49.16 Aligned_cols=98 Identities=12% Similarity=0.228 Sum_probs=53.2
Q ss_pred EEEEEecCCCCcchHHHHHHhHHHhhhcCceeccCcCCcchHHHHHhhcCCCCCccCCccchHH-HHHHHHHHHHh---C
Q 002090 670 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV-EMSEIRSIVTA---T 745 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl~~la~~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~s~fs~-~~~~~~~il~~---a 745 (968)
.+++.||.|.||||+.+.++-- ++.. ......+ ..+...+ ..... .++++...+.. .
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~-----~~~~-~~~~~d~-------~~l~~~~------~~~~id~ir~li~~~~~~p~~ 80 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEY-----VEKF-PPKASDV-------LEIDPEG------ENIGIDDIRTIKDFLNYSPEL 80 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH-----HHTS-CCCTTTE-------EEECCSS------SCBCHHHHHHHHHHHTSCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHh-----Cchh-hccCCCE-------EEEcCCc------CCCCHHHHHHHHHHHhhcccc
Confidence 5899999999999999998642 1100 0000000 1111110 01111 23333322222 2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CcEEEEeccChh
Q 002090 746 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI--GCLGIVSTHLHG 791 (968)
Q Consensus 746 ~~~~LlLlDEp~~GlD~~~~~~i~~~ll~~l~~~--g~~vl~~TH~~e 791 (968)
.+.+++|+||+-.=+.. . ..++++.+.+- .+.+|++|++..
T Consensus 81 ~~~kvviIdead~lt~~-a----~naLLk~LEep~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ-A----ANAFLKALEEPPEYAVIVLNTRRWH 123 (305)
T ss_dssp SSSEEEEETTGGGBCHH-H----HHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEeccHHHhCHH-H----HHHHHHHHhCCCCCeEEEEEECChH
Confidence 35689999998665432 2 35677777653 567788888764
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.81 E-value=0.34 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999653
No 454
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.80 E-value=0.36 Score=49.73 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|.+++|.|+.||||||.++.++-.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999997643
No 455
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.72 E-value=0.33 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999998653
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.68 E-value=0.29 Score=55.76 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCCcchHHHHHHh
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~g 690 (968)
..+++|+|++||||||+.+.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999854
No 457
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.61 E-value=0.34 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.2
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999998653
No 458
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.55 E-value=0.36 Score=47.94 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 379999999999999999965
No 459
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.53 E-value=0.35 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998653
No 460
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.53 E-value=0.37 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..+++|+||+|||||||.+.++--
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 357899999999999999998653
No 461
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.32 E-value=0.32 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
+++|+|+.||||||+.+.++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998653
No 462
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=85.28 E-value=0.36 Score=47.78 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 379999999999999999865
No 463
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.23 E-value=0.37 Score=47.21 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 379999999999999999864
No 464
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.22 E-value=0.25 Score=49.55 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999854
No 465
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.19 E-value=0.92 Score=55.75 Aligned_cols=22 Identities=36% Similarity=0.776 Sum_probs=20.2
Q ss_pred EEEEecCCCCcchHHHHHHhHH
Q 002090 671 FLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl~ 692 (968)
+.++||.|+|||++.+.++...
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998765
No 466
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.13 E-value=0.39 Score=48.59 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 479999999999999999865
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.13 E-value=0.41 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|.|+.||||||+.+.++-.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999654
No 468
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.13 E-value=0.38 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999864
No 469
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.11 E-value=0.39 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4799999999999999998764
No 470
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.97 E-value=0.43 Score=48.13 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999865
No 471
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=84.84 E-value=0.38 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..++|+|++|+|||||++.+.|-
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999763
No 472
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.82 E-value=0.41 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999863
No 473
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=84.82 E-value=0.34 Score=47.67 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999954
No 474
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=84.76 E-value=0.41 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 26 ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999999965
No 475
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=84.70 E-value=0.38 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
No 476
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=84.64 E-value=0.37 Score=53.92 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEecCCCCcchHHHHHHhH
Q 002090 671 FLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 671 ~~I~GpNGsGKSTllk~i~gl 691 (968)
++|+|++|+|||||++.+.+.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999875
No 477
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=84.60 E-value=0.39 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+|+.|+|||||++.+.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999663
No 478
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.59 E-value=0.41 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..++|+|+.||||||+.+.++--
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 479
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=84.56 E-value=0.38 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999653
No 480
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=84.55 E-value=0.42 Score=47.96 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999998653
No 481
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=84.55 E-value=0.41 Score=47.86 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 379999999999999999875
No 482
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.51 E-value=0.41 Score=47.51 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 379999999999999999865
No 483
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=84.46 E-value=0.39 Score=48.22 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998653
No 484
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=84.43 E-value=0.42 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999854
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.41 E-value=0.42 Score=47.18 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999964
No 486
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.29 E-value=0.43 Score=47.27 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999965
No 487
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.26 E-value=0.44 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999653
No 488
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.23 E-value=0.41 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999775
No 489
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.18 E-value=0.44 Score=47.37 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
-++|+|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998653
No 490
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=84.13 E-value=0.32 Score=48.15 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcchHHHHHHhH
Q 002090 670 LFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~gl 691 (968)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999654
No 491
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=84.02 E-value=0.45 Score=46.37 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999864
No 492
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=83.92 E-value=0.49 Score=49.06 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|.+++|.|+.||||||+.+.++-.+
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997654
No 493
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.90 E-value=0.45 Score=47.39 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 30 ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999865
No 494
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.86 E-value=0.43 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 379999999999999999865
No 495
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.83 E-value=0.49 Score=48.83 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCCcchHHHHHHhH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl 691 (968)
..+++|+||.||||+|..+.|+--
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998653
No 496
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.77 E-value=0.46 Score=46.86 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
.++|+|+.|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999965
No 497
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=83.74 E-value=0.46 Score=47.54 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 30 ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 579999999999999999965
No 498
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=83.69 E-value=0.37 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcchHHHHHHh
Q 002090 670 LFLLTGPNGGGKSSLLRSICA 690 (968)
Q Consensus 670 ~~~I~GpNGsGKSTllk~i~g 690 (968)
-++|+|+.|+|||||++.+.+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 379999999999999999854
No 499
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.67 E-value=0.49 Score=52.11 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCcchHHHHHHhH
Q 002090 669 SLFLLTGPNGGGKSSLLRSICAA 691 (968)
Q Consensus 669 ~~~~I~GpNGsGKSTllk~i~gl 691 (968)
.+++|+||.|+|||||.+.++--
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998653
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.66 E-value=0.51 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCCcchHHHHHHhHH
Q 002090 668 QSLFLLTGPNGGGKSSLLRSICAAS 692 (968)
Q Consensus 668 g~~~~I~GpNGsGKSTllk~i~gl~ 692 (968)
|.+++|-|+-||||||.++.++-.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5788999999999999999987643
Done!