Query 002091
Match_columns 968
No_of_seqs 562 out of 3802
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 16:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.9E-46 6.3E-51 465.4 55.5 591 350-961 30-765 (2102)
2 PLN03200 cellulose synthase-in 100.0 3.4E-44 7.5E-49 447.0 52.8 531 379-961 12-681 (2102)
3 KOG0166 Karyopherin (importin) 100.0 7.3E-39 1.6E-43 351.3 37.8 410 423-923 68-489 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2.4E-39 5.1E-44 326.2 30.1 419 422-929 72-505 (526)
5 KOG4224 Armadillo repeat prote 100.0 2.3E-32 4.9E-37 278.2 26.3 407 421-923 85-496 (550)
6 COG5064 SRP1 Karyopherin (impo 100.0 6.6E-31 1.4E-35 265.3 25.7 404 504-958 72-494 (526)
7 KOG4224 Armadillo repeat prote 100.0 4.1E-31 8.9E-36 269.1 23.2 419 392-924 98-526 (550)
8 KOG0166 Karyopherin (importin) 100.0 5.2E-30 1.1E-34 281.7 33.2 401 505-958 68-484 (514)
9 PF05804 KAP: Kinesin-associat 99.9 3.6E-23 7.8E-28 241.2 40.2 381 394-875 264-648 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.2E-21 2.5E-26 228.6 37.4 380 435-921 263-650 (708)
11 KOG1048 Neural adherens juncti 99.8 2.9E-19 6.2E-24 203.0 28.8 386 380-777 233-700 (717)
12 KOG1048 Neural adherens juncti 99.8 5.3E-19 1.1E-23 200.9 25.8 427 422-940 234-706 (717)
13 PF04564 U-box: U-box domain; 99.8 3E-21 6.5E-26 160.7 4.8 72 262-333 1-72 (73)
14 KOG2122 Beta-catenin-binding p 99.8 1.5E-17 3.3E-22 194.6 24.0 363 425-804 201-603 (2195)
15 KOG4199 Uncharacterized conser 99.7 7.2E-15 1.6E-19 149.9 26.6 382 312-760 20-445 (461)
16 KOG2122 Beta-catenin-binding p 99.6 4.5E-15 9.9E-20 174.3 20.2 364 467-875 202-600 (2195)
17 KOG4500 Rho/Rac GTPase guanine 99.6 1.5E-13 3.2E-18 144.6 28.7 460 395-905 58-556 (604)
18 smart00504 Ubox Modified RING 99.6 2.8E-16 6.1E-21 128.2 4.8 63 265-328 1-63 (63)
19 KOG1222 Kinesin associated pro 99.6 2.1E-13 4.5E-18 145.0 26.9 382 436-878 278-666 (791)
20 KOG4500 Rho/Rac GTPase guanine 99.6 1.5E-13 3.3E-18 144.5 22.1 384 477-944 57-458 (604)
21 KOG4199 Uncharacterized conser 99.6 1.1E-12 2.4E-17 134.1 27.3 330 460-875 102-443 (461)
22 KOG1222 Kinesin associated pro 99.6 8.9E-12 1.9E-16 132.7 32.5 384 395-805 279-666 (791)
23 KOG4642 Chaperone-dependent E3 99.5 8.9E-13 1.9E-17 129.3 15.1 240 54-333 31-279 (284)
24 PF10508 Proteasom_PSMB: Prote 99.5 7.9E-11 1.7E-15 137.3 34.0 403 508-963 43-465 (503)
25 PF10508 Proteasom_PSMB: Prote 99.5 2.2E-10 4.8E-15 133.6 36.8 405 426-921 43-463 (503)
26 KOG2171 Karyopherin (importin) 99.4 8E-10 1.7E-14 131.1 37.7 499 384-959 9-545 (1075)
27 PF04826 Arm_2: Armadillo-like 99.4 1.9E-11 4.1E-16 127.6 21.2 192 379-577 11-206 (254)
28 KOG1293 Proteins containing ar 99.4 8.1E-11 1.7E-15 131.2 26.3 486 429-959 17-532 (678)
29 PRK09687 putative lyase; Provi 99.4 8.2E-11 1.8E-15 125.9 24.3 257 461-799 22-279 (280)
30 PRK09687 putative lyase; Provi 99.4 5.3E-11 1.1E-15 127.4 22.7 254 503-873 23-279 (280)
31 PRK13800 putative oxidoreducta 99.4 1.2E-10 2.6E-15 145.6 28.7 278 542-957 619-896 (897)
32 PRK13800 putative oxidoreducta 99.3 2.4E-10 5.2E-15 142.9 28.2 278 460-873 619-896 (897)
33 PF04826 Arm_2: Armadillo-like 99.3 8E-11 1.7E-15 123.0 18.5 196 459-712 9-205 (254)
34 PF01602 Adaptin_N: Adaptin N 99.3 5.1E-10 1.1E-14 133.7 26.8 434 421-959 42-482 (526)
35 PTZ00429 beta-adaptin; Provisi 99.3 2.2E-08 4.7E-13 119.8 38.7 360 383-802 35-397 (746)
36 PF01602 Adaptin_N: Adaptin N 99.3 1.7E-09 3.7E-14 129.1 29.6 472 380-959 42-523 (526)
37 KOG2171 Karyopherin (importin) 99.2 3.3E-08 7.2E-13 117.6 37.2 466 380-918 36-544 (1075)
38 KOG1293 Proteins containing ar 99.2 3.6E-09 7.8E-14 118.3 27.3 480 347-875 21-532 (678)
39 KOG2023 Nuclear transport rece 99.2 5.1E-10 1.1E-14 124.1 20.0 433 380-875 10-504 (885)
40 KOG0168 Putative ubiquitin fus 99.2 3.5E-09 7.6E-14 120.6 26.3 353 502-902 210-654 (1051)
41 KOG2023 Nuclear transport rece 99.1 3.3E-08 7.1E-13 110.1 25.3 557 337-958 130-815 (885)
42 cd00256 VATPase_H VATPase_H, r 99.1 3.7E-08 7.9E-13 109.6 25.9 353 545-919 54-424 (429)
43 PTZ00429 beta-adaptin; Provisi 99.1 9.2E-06 2E-10 97.7 46.8 487 348-959 45-545 (746)
44 cd00020 ARM Armadillo/beta-cat 99.0 3.1E-09 6.6E-14 99.3 13.0 116 457-575 2-119 (120)
45 PF15227 zf-C3HC4_4: zinc fing 99.0 2E-10 4.3E-15 83.7 2.8 39 268-306 1-42 (42)
46 cd00020 ARM Armadillo/beta-cat 98.9 1.3E-08 2.9E-13 94.9 13.3 116 678-801 3-119 (120)
47 cd00256 VATPase_H VATPase_H, r 98.9 3E-07 6.5E-12 102.5 25.2 325 421-759 53-425 (429)
48 PLN03208 E3 ubiquitin-protein 98.9 1E-09 2.2E-14 106.3 4.1 61 261-321 14-89 (193)
49 KOG2759 Vacuolar H+-ATPase V1 98.8 5.5E-07 1.2E-11 96.4 23.0 309 597-920 116-438 (442)
50 TIGR00599 rad18 DNA repair pro 98.8 4.2E-09 9.1E-14 115.2 5.7 69 263-332 24-92 (397)
51 KOG1241 Karyopherin (importin) 98.8 3.2E-06 6.9E-11 96.4 26.8 430 381-875 3-476 (859)
52 PF11789 zf-Nse: Zinc-finger o 98.7 3.9E-09 8.4E-14 82.1 1.8 44 264-307 10-55 (57)
53 KOG1060 Vesicle coat complex A 98.7 5.4E-06 1.2E-10 94.7 25.2 422 385-918 40-494 (968)
54 KOG0946 ER-Golgi vesicle-tethe 98.6 1.7E-05 3.7E-10 90.7 27.7 294 504-804 23-348 (970)
55 PF13923 zf-C3HC4_2: Zinc fing 98.6 2.3E-08 5E-13 72.1 2.5 38 268-306 1-39 (39)
56 PF13445 zf-RING_UBOX: RING-ty 98.6 1.6E-08 3.6E-13 73.4 1.7 36 268-304 1-43 (43)
57 KOG0168 Putative ubiquitin fus 98.6 1.8E-05 4E-10 91.2 26.7 258 423-693 169-437 (1051)
58 KOG2759 Vacuolar H+-ATPase V1 98.5 1E-05 2.2E-10 86.9 21.0 323 423-759 67-438 (442)
59 KOG0946 ER-Golgi vesicle-tethe 98.5 4.3E-05 9.3E-10 87.6 26.2 329 381-720 23-408 (970)
60 KOG3678 SARM protein (with ste 98.4 8.9E-06 1.9E-10 87.4 17.5 269 633-918 174-450 (832)
61 KOG0213 Splicing factor 3b, su 98.4 0.00012 2.5E-09 83.3 27.0 463 429-960 561-1065(1172)
62 KOG2160 Armadillo/beta-catenin 98.4 8E-06 1.7E-10 86.8 16.6 186 431-623 93-281 (342)
63 PF03224 V-ATPase_H_N: V-ATPas 98.4 7.3E-06 1.6E-10 90.2 16.4 233 545-794 56-306 (312)
64 PF00097 zf-C3HC4: Zinc finger 98.4 2.2E-07 4.7E-12 68.1 2.8 39 268-306 1-41 (41)
65 PF03224 V-ATPase_H_N: V-ATPas 98.3 1.7E-05 3.7E-10 87.3 17.9 218 503-735 55-294 (312)
66 KOG1241 Karyopherin (importin) 98.3 0.00026 5.6E-09 81.3 27.1 386 504-959 36-476 (859)
67 KOG0287 Postreplication repair 98.3 3.1E-07 6.7E-12 94.1 2.8 67 264-331 22-88 (442)
68 PF05536 Neurochondrin: Neuroc 98.3 0.00058 1.3E-08 80.2 29.4 403 422-875 6-492 (543)
69 KOG2160 Armadillo/beta-catenin 98.2 3.8E-05 8.3E-10 81.8 17.0 185 608-801 96-281 (342)
70 TIGR02270 conserved hypothetic 98.2 0.00018 3.8E-09 81.1 23.3 244 420-760 53-297 (410)
71 KOG2042 Ubiquitin fusion degra 98.2 3.8E-06 8.1E-11 99.9 9.1 71 261-332 866-937 (943)
72 KOG0823 Predicted E3 ubiquitin 98.2 7.2E-07 1.6E-11 88.1 2.7 56 264-319 46-103 (230)
73 PF13920 zf-C3HC4_3: Zinc fing 98.2 1.2E-06 2.5E-11 67.3 2.9 47 264-311 1-48 (50)
74 TIGR02270 conserved hypothetic 98.2 0.00022 4.9E-09 80.3 22.3 152 595-801 54-206 (410)
75 KOG1062 Vesicle coat complex A 98.2 0.00099 2.2E-08 77.2 27.2 291 429-802 115-414 (866)
76 KOG1061 Vesicle coat complex A 98.2 9.6E-05 2.1E-09 85.5 19.1 329 421-801 49-378 (734)
77 KOG0213 Splicing factor 3b, su 98.2 0.00075 1.6E-08 77.0 25.3 414 423-918 638-1063(1172)
78 KOG2973 Uncharacterized conser 98.1 0.0002 4.4E-09 74.0 19.0 276 506-801 6-314 (353)
79 PHA02929 N1R/p28-like protein; 98.1 1.9E-06 4.2E-11 87.9 3.9 47 264-311 173-227 (238)
80 PF14835 zf-RING_6: zf-RING of 98.1 1.1E-06 2.5E-11 68.0 1.2 58 265-325 7-65 (65)
81 KOG1789 Endocytosis protein RM 98.1 0.0016 3.6E-08 76.7 26.8 334 437-784 1741-2141(2235)
82 COG5432 RAD18 RING-finger-cont 98.1 2.2E-06 4.7E-11 86.1 3.3 65 265-330 25-89 (391)
83 KOG1789 Endocytosis protein RM 98.1 0.0011 2.3E-08 78.2 25.0 139 744-921 1739-1884(2235)
84 KOG1059 Vesicle coat complex A 98.0 0.0023 4.9E-08 73.3 26.4 243 423-705 146-394 (877)
85 KOG1062 Vesicle coat complex A 98.0 0.0035 7.5E-08 72.9 27.3 426 395-915 123-576 (866)
86 COG5113 UFD2 Ubiquitin fusion 98.0 2.2E-05 4.8E-10 87.2 9.3 73 260-333 849-922 (929)
87 KOG0320 Predicted E3 ubiquitin 98.0 3.9E-06 8.4E-11 79.0 3.0 53 264-317 130-184 (187)
88 cd00162 RING RING-finger (Real 98.0 6.2E-06 1.4E-10 61.7 3.5 43 267-309 1-44 (45)
89 KOG4413 26S proteasome regulat 98.0 0.003 6.4E-08 65.8 23.7 358 422-800 83-482 (524)
90 KOG1242 Protein containing ada 97.9 0.001 2.2E-08 75.7 21.1 346 422-802 97-444 (569)
91 COG5181 HSH155 U2 snRNP splice 97.9 0.0015 3.2E-08 73.3 21.8 257 640-960 605-870 (975)
92 KOG1824 TATA-binding protein-i 97.9 0.0062 1.4E-07 71.8 27.6 227 420-667 46-285 (1233)
93 smart00184 RING Ring finger. E 97.9 1.1E-05 2.4E-10 58.1 3.7 39 268-306 1-39 (39)
94 KOG2177 Predicted E3 ubiquitin 97.9 7.4E-06 1.6E-10 92.0 4.2 67 264-333 12-78 (386)
95 PF13639 zf-RING_2: Ring finge 97.9 3.9E-06 8.5E-11 62.4 1.2 40 267-307 2-44 (44)
96 KOG1242 Protein containing ada 97.9 0.0019 4E-08 73.6 22.8 334 547-961 99-446 (569)
97 COG5215 KAP95 Karyopherin (imp 97.9 0.013 2.9E-07 65.5 27.9 384 389-804 15-439 (858)
98 KOG4646 Uncharacterized conser 97.9 0.00012 2.6E-09 66.2 10.0 114 462-578 16-130 (173)
99 PF05536 Neurochondrin: Neuroc 97.9 0.0021 4.5E-08 75.6 23.4 386 463-900 6-460 (543)
100 KOG3678 SARM protein (with ste 97.9 0.0004 8.7E-09 75.1 15.6 250 410-667 170-451 (832)
101 PHA02926 zinc finger-like prot 97.8 1.2E-05 2.7E-10 78.7 3.8 51 263-313 168-232 (242)
102 KOG1824 TATA-binding protein-i 97.8 0.008 1.7E-07 70.9 26.2 431 392-922 583-1038(1233)
103 KOG0317 Predicted E3 ubiquitin 97.8 1.7E-05 3.7E-10 81.0 4.2 55 260-315 234-288 (293)
104 KOG0211 Protein phosphatase 2A 97.8 0.0068 1.5E-07 72.7 26.4 419 472-962 247-666 (759)
105 KOG2973 Uncharacterized conser 97.8 0.0027 5.9E-08 65.9 19.7 295 424-759 6-315 (353)
106 KOG4413 26S proteasome regulat 97.8 0.0024 5.1E-08 66.5 19.3 276 641-959 84-376 (524)
107 KOG4646 Uncharacterized conser 97.8 0.00039 8.6E-09 62.9 11.8 130 381-511 17-149 (173)
108 KOG0311 Predicted E3 ubiquitin 97.8 6.7E-06 1.5E-10 85.7 0.7 67 263-329 41-109 (381)
109 KOG1061 Vesicle coat complex A 97.8 0.0046 9.9E-08 72.1 23.3 106 421-534 86-191 (734)
110 COG1413 FOG: HEAT repeat [Ener 97.7 0.0075 1.6E-07 67.4 24.7 279 421-798 43-331 (335)
111 KOG0212 Uncharacterized conser 97.7 0.0018 3.8E-08 72.3 18.5 349 541-962 81-446 (675)
112 COG1413 FOG: HEAT repeat [Ener 97.7 0.012 2.7E-07 65.7 25.5 107 503-652 43-150 (335)
113 KOG0212 Uncharacterized conser 97.7 0.0026 5.6E-08 71.0 18.7 316 461-804 83-408 (675)
114 COG5215 KAP95 Karyopherin (imp 97.7 0.011 2.3E-07 66.2 23.2 372 475-920 18-437 (858)
115 PF00514 Arm: Armadillo/beta-c 97.6 7.4E-05 1.6E-09 54.6 4.5 40 762-801 1-40 (41)
116 KOG1060 Vesicle coat complex A 97.6 0.054 1.2E-06 63.2 29.2 204 424-664 38-242 (968)
117 PF10165 Ric8: Guanine nucleot 97.6 0.008 1.7E-07 69.2 23.1 265 400-667 2-336 (446)
118 PF00514 Arm: Armadillo/beta-c 97.6 8.2E-05 1.8E-09 54.3 4.3 41 492-532 1-41 (41)
119 KOG2259 Uncharacterized conser 97.6 0.00055 1.2E-08 77.4 12.4 257 597-918 200-473 (823)
120 TIGR00570 cdk7 CDK-activating 97.6 8.3E-05 1.8E-09 78.3 5.7 58 264-321 2-68 (309)
121 PF14664 RICTOR_N: Rapamycin-i 97.6 0.024 5.2E-07 63.4 25.4 312 422-758 26-363 (371)
122 COG5181 HSH155 U2 snRNP splice 97.6 0.00068 1.5E-08 75.8 12.8 328 545-958 605-945 (975)
123 PF14634 zf-RING_5: zinc-RING 97.6 7.4E-05 1.6E-09 55.4 3.4 40 268-308 2-44 (44)
124 KOG0289 mRNA splicing factor [ 97.5 0.00025 5.5E-09 76.0 8.5 52 266-318 1-53 (506)
125 KOG1059 Vesicle coat complex A 97.5 0.0019 4.1E-08 73.9 15.5 217 597-876 146-365 (877)
126 KOG0211 Protein phosphatase 2A 97.5 0.019 4.1E-07 69.0 24.6 457 424-961 162-626 (759)
127 COG5231 VMA13 Vacuolar H+-ATPa 97.4 0.0034 7.5E-08 65.2 14.5 258 647-920 157-428 (432)
128 COG5574 PEX10 RING-finger-cont 97.4 9.1E-05 2E-09 74.7 3.1 55 259-313 209-264 (271)
129 PF14664 RICTOR_N: Rapamycin-i 97.4 0.0068 1.5E-07 67.7 17.7 232 641-922 27-271 (371)
130 KOG0978 E3 ubiquitin ligase in 97.3 0.011 2.3E-07 69.4 18.9 54 264-317 642-695 (698)
131 KOG2734 Uncharacterized conser 97.3 0.036 7.8E-07 60.5 21.4 263 396-667 101-399 (536)
132 COG5240 SEC21 Vesicle coat com 97.3 0.048 1E-06 61.2 22.3 288 505-875 266-554 (898)
133 PF13646 HEAT_2: HEAT repeats; 97.2 0.0012 2.6E-08 57.5 8.0 86 775-916 1-88 (88)
134 KOG0297 TNF receptor-associate 97.2 0.00024 5.2E-09 79.8 3.8 68 262-330 18-87 (391)
135 PF13646 HEAT_2: HEAT repeats; 97.2 0.0015 3.3E-08 56.8 7.7 86 423-528 1-88 (88)
136 PF05659 RPW8: Arabidopsis bro 97.1 0.0053 1.1E-07 58.6 11.4 108 14-129 14-122 (147)
137 KOG2734 Uncharacterized conser 97.1 0.062 1.3E-06 58.7 20.3 243 440-691 103-370 (536)
138 COG5222 Uncharacterized conser 97.1 0.00055 1.2E-08 69.4 4.6 66 266-331 275-342 (427)
139 PF04564 U-box: U-box domain; 97.1 0.0002 4.4E-09 59.7 1.1 65 300-366 4-71 (73)
140 KOG1517 Guanine nucleotide bin 97.1 0.0068 1.5E-07 72.2 13.7 233 683-959 473-731 (1387)
141 COG5369 Uncharacterized conser 97.0 0.0069 1.5E-07 67.2 12.7 184 440-626 408-596 (743)
142 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00048 1E-08 57.3 2.9 39 268-307 22-73 (73)
143 COG5240 SEC21 Vesicle coat com 96.9 1.1 2.5E-05 50.7 31.2 445 425-959 69-554 (898)
144 KOG1077 Vesicle coat complex A 96.9 0.62 1.4E-05 54.0 26.8 299 396-725 166-501 (938)
145 KOG2259 Uncharacterized conser 96.9 0.0078 1.7E-07 68.5 11.8 219 549-802 203-439 (823)
146 KOG1517 Guanine nucleotide bin 96.8 0.021 4.6E-07 68.2 14.6 237 641-918 474-730 (1387)
147 PF10165 Ric8: Guanine nucleot 96.8 0.05 1.1E-06 62.8 17.8 261 484-759 3-337 (446)
148 KOG4159 Predicted E3 ubiquitin 96.8 0.001 2.2E-08 73.6 3.5 70 262-332 81-155 (398)
149 KOG2660 Locus-specific chromos 96.7 0.0011 2.3E-08 69.5 3.4 64 264-328 14-82 (331)
150 smart00185 ARM Armadillo/beta- 96.7 0.003 6.4E-08 45.9 4.8 39 493-531 2-40 (41)
151 PF04078 Rcd1: Cell differenti 96.7 0.062 1.3E-06 55.6 15.7 238 652-959 8-261 (262)
152 COG5369 Uncharacterized conser 96.7 0.0079 1.7E-07 66.8 9.8 186 696-919 402-593 (743)
153 PF13513 HEAT_EZ: HEAT-like re 96.7 0.004 8.6E-08 48.8 5.6 54 745-800 2-55 (55)
154 KOG2164 Predicted E3 ubiquitin 96.7 0.001 2.2E-08 73.7 2.9 55 264-318 185-243 (513)
155 KOG1078 Vesicle coat complex C 96.7 0.39 8.5E-06 56.4 23.4 346 431-875 182-531 (865)
156 PF12348 CLASP_N: CLASP N term 96.7 0.011 2.4E-07 62.0 10.5 181 472-667 17-205 (228)
157 COG5231 VMA13 Vacuolar H+-ATPa 96.6 0.052 1.1E-06 56.8 14.4 237 510-759 156-428 (432)
158 COG5096 Vesicle coat complex, 96.6 0.5 1.1E-05 56.7 24.4 140 423-577 57-196 (757)
159 KOG1240 Protein kinase contain 96.6 0.14 2.9E-06 62.8 19.6 296 505-921 424-726 (1431)
160 PRK14707 hypothetical protein; 96.5 4.9 0.00011 52.9 38.8 514 379-956 204-735 (2710)
161 KOG1077 Vesicle coat complex A 96.5 0.44 9.5E-06 55.2 22.1 338 507-920 115-488 (938)
162 PRK14707 hypothetical protein; 96.5 5.1 0.00011 52.7 39.0 515 382-956 165-693 (2710)
163 smart00185 ARM Armadillo/beta- 96.5 0.0062 1.3E-07 44.2 5.0 38 764-801 3-40 (41)
164 KOG0567 HEAT repeat-containing 96.4 0.18 4E-06 51.8 16.5 92 683-801 188-279 (289)
165 PF04078 Rcd1: Cell differenti 96.4 0.27 5.8E-06 51.0 18.0 228 392-666 8-260 (262)
166 KOG1058 Vesicle coat complex C 96.4 0.17 3.7E-06 58.9 17.9 353 470-922 107-465 (948)
167 KOG3036 Protein involved in ce 96.3 1.1 2.5E-05 45.6 21.4 157 436-637 94-257 (293)
168 KOG1943 Beta-tubulin folding c 96.3 2.7 5.8E-05 51.6 28.1 356 421-801 341-746 (1133)
169 KOG0567 HEAT repeat-containing 96.3 0.74 1.6E-05 47.5 20.3 228 464-758 38-279 (289)
170 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0087 1.9E-07 46.8 5.2 55 476-530 1-55 (55)
171 PF09759 Atx10homo_assoc: Spin 96.2 0.015 3.2E-07 51.4 6.7 68 700-772 3-71 (102)
172 KOG1078 Vesicle coat complex C 96.2 3.2 7E-05 49.2 26.9 233 689-959 252-531 (865)
173 KOG1943 Beta-tubulin folding c 96.1 3 6.5E-05 51.2 27.2 252 639-950 341-601 (1133)
174 KOG3036 Protein involved in ce 96.1 0.52 1.1E-05 47.9 17.7 104 698-802 94-197 (293)
175 KOG1020 Sister chromatid cohes 96.0 7.1 0.00015 49.9 32.1 150 420-581 815-965 (1692)
176 PF12348 CLASP_N: CLASP N term 96.0 0.033 7.2E-07 58.3 9.9 178 391-576 19-206 (228)
177 PF12861 zf-Apc11: Anaphase-pr 96.0 0.0087 1.9E-07 50.2 4.0 46 266-311 33-82 (85)
178 KOG1002 Nucleotide excision re 95.9 0.0042 9E-08 68.2 2.2 50 263-312 534-587 (791)
179 PF12460 MMS19_C: RNAPII trans 95.8 4.3 9.3E-05 46.7 26.8 358 505-922 1-396 (415)
180 KOG1058 Vesicle coat complex C 95.8 0.48 1E-05 55.4 18.1 348 429-875 107-462 (948)
181 KOG1813 Predicted E3 ubiquitin 95.8 0.003 6.4E-08 64.9 0.6 44 266-310 242-285 (313)
182 KOG0824 Predicted E3 ubiquitin 95.8 0.0053 1.1E-07 63.3 2.2 49 266-314 8-56 (324)
183 KOG4535 HEAT and armadillo rep 95.7 0.39 8.5E-06 53.1 16.1 194 743-964 404-607 (728)
184 KOG4367 Predicted Zn-finger pr 95.6 0.0053 1.2E-07 65.6 1.6 33 264-296 3-35 (699)
185 KOG3039 Uncharacterized conser 95.5 0.0063 1.4E-07 60.5 1.8 32 266-297 44-75 (303)
186 PF12755 Vac14_Fab1_bd: Vacuol 95.5 0.041 9E-07 48.6 6.6 69 847-920 27-96 (97)
187 KOG0915 Uncharacterized conser 95.4 1.1 2.3E-05 56.7 20.3 240 596-875 1040-1305(1702)
188 KOG0802 E3 ubiquitin ligase [P 95.4 0.007 1.5E-07 71.7 1.8 46 264-310 290-340 (543)
189 KOG4628 Predicted E3 ubiquitin 95.2 0.012 2.6E-07 63.5 2.7 47 266-312 230-279 (348)
190 KOG1240 Protein kinase contain 95.2 0.72 1.5E-05 56.8 17.5 262 475-760 436-726 (1431)
191 KOG2879 Predicted E3 ubiquitin 95.2 0.014 3E-07 59.4 3.0 50 264-313 238-289 (298)
192 PF09759 Atx10homo_assoc: Spin 95.1 0.089 1.9E-06 46.5 7.3 61 612-675 3-65 (102)
193 COG5152 Uncharacterized conser 95.0 0.011 2.4E-07 56.7 1.6 44 266-310 197-240 (259)
194 PF11841 DUF3361: Domain of un 94.9 0.31 6.7E-06 46.8 11.1 128 635-770 7-142 (160)
195 PF11841 DUF3361: Domain of un 94.9 0.21 4.5E-06 47.9 9.9 122 498-626 6-133 (160)
196 KOG2979 Protein involved in DN 94.9 0.021 4.6E-07 57.9 3.4 46 264-309 175-222 (262)
197 PF05004 IFRD: Interferon-rela 94.9 1.1 2.5E-05 48.9 17.0 192 466-667 47-256 (309)
198 KOG4151 Myosin assembly protei 94.8 0.32 7E-06 57.5 12.9 202 629-875 494-698 (748)
199 COG5540 RING-finger-containing 94.8 0.018 3.8E-07 59.3 2.4 48 265-312 323-373 (374)
200 smart00504 Ubox Modified RING 94.7 0.027 5.7E-07 45.5 2.9 59 301-362 2-63 (63)
201 PF04641 Rtf2: Rtf2 RING-finge 94.7 0.023 5.1E-07 60.4 3.1 51 264-316 112-166 (260)
202 PF11698 V-ATPase_H_C: V-ATPas 94.6 0.076 1.6E-06 48.2 5.8 71 847-919 43-114 (119)
203 KOG1248 Uncharacterized conser 94.5 9.7 0.00021 47.6 24.7 220 649-919 664-897 (1176)
204 KOG0915 Uncharacterized conser 94.3 6.2 0.00013 50.4 22.6 289 472-804 1008-1308(1702)
205 KOG4151 Myosin assembly protei 94.3 0.52 1.1E-05 55.8 13.1 242 532-800 492-739 (748)
206 KOG1991 Nuclear transport rece 94.2 19 0.00041 44.3 32.9 419 388-875 13-531 (1010)
207 PF08569 Mo25: Mo25-like; Int 94.1 1.3 2.8E-05 48.7 15.3 225 638-900 75-306 (335)
208 KOG3039 Uncharacterized conser 94.1 0.038 8.1E-07 55.2 3.0 53 264-317 220-276 (303)
209 COG5243 HRD1 HRD ubiquitin lig 94.1 0.034 7.3E-07 58.8 2.7 46 264-310 286-344 (491)
210 PF05004 IFRD: Interferon-rela 94.0 1.5 3.2E-05 48.0 15.5 197 599-802 47-257 (309)
211 PF12717 Cnd1: non-SMC mitotic 94.0 1.5 3.4E-05 43.7 14.4 92 516-625 1-93 (178)
212 KOG0826 Predicted E3 ubiquitin 93.9 0.034 7.5E-07 58.1 2.4 48 262-310 297-345 (357)
213 KOG4535 HEAT and armadillo rep 93.7 0.49 1.1E-05 52.4 10.6 273 512-801 304-602 (728)
214 COG5096 Vesicle coat complex, 93.5 1.3 2.8E-05 53.3 14.7 52 742-801 104-155 (757)
215 KOG2062 26S proteasome regulat 93.5 5.1 0.00011 47.2 18.6 160 594-787 518-679 (929)
216 PF12717 Cnd1: non-SMC mitotic 93.2 0.23 5E-06 49.7 6.9 91 786-921 1-93 (178)
217 KOG1248 Uncharacterized conser 92.8 24 0.00051 44.4 23.9 231 687-959 658-897 (1176)
218 PF13764 E3_UbLigase_R4: E3 ub 92.6 13 0.00027 45.9 21.5 181 458-654 113-334 (802)
219 KOG2999 Regulator of Rac1, req 92.4 4.4 9.6E-05 46.1 15.8 166 506-680 86-254 (713)
220 PF06025 DUF913: Domain of Unk 92.3 8.9 0.00019 43.2 18.7 124 611-735 76-207 (379)
221 PF08569 Mo25: Mo25-like; Int 92.3 5.4 0.00012 44.0 16.6 195 379-578 75-285 (335)
222 PF04063 DUF383: Domain of unk 92.2 0.81 1.7E-05 46.0 9.2 118 437-554 11-157 (192)
223 PF02891 zf-MIZ: MIZ/SP-RING z 91.9 0.14 3E-06 39.0 2.5 45 265-309 2-50 (50)
224 KOG1832 HIV-1 Vpr-binding prot 91.8 16 0.00035 44.0 19.8 125 676-803 595-774 (1516)
225 KOG2817 Predicted E3 ubiquitin 91.4 0.12 2.7E-06 55.9 2.6 42 265-306 334-380 (394)
226 KOG2062 26S proteasome regulat 90.9 11 0.00023 44.7 17.2 134 639-802 519-653 (929)
227 PF02985 HEAT: HEAT repeat; I 90.9 0.34 7.4E-06 32.6 3.4 28 775-802 2-29 (31)
228 PF13764 E3_UbLigase_R4: E3 ub 90.8 23 0.0005 43.7 21.1 192 592-789 114-335 (802)
229 KOG3113 Uncharacterized conser 90.8 0.17 3.6E-06 51.0 2.5 49 264-315 110-162 (293)
230 KOG2025 Chromosome condensatio 90.6 13 0.00027 44.0 17.4 105 596-709 86-190 (892)
231 KOG1734 Predicted RING-contain 90.5 0.11 2.4E-06 52.7 1.1 57 262-318 221-288 (328)
232 KOG1832 HIV-1 Vpr-binding prot 90.4 9.7 0.00021 45.7 16.4 360 395-775 369-787 (1516)
233 KOG0414 Chromosome condensatio 90.4 2.1 4.5E-05 53.0 11.5 136 725-913 920-1057(1251)
234 KOG0804 Cytoplasmic Zn-finger 90.2 0.11 2.5E-06 56.7 0.9 42 267-311 177-222 (493)
235 PF08045 CDC14: Cell division 90.2 0.86 1.9E-05 47.7 7.3 84 837-923 123-210 (257)
236 PF08045 CDC14: Cell division 90.0 3 6.6E-05 43.7 11.1 98 478-576 107-207 (257)
237 PF12755 Vac14_Fab1_bd: Vacuol 89.7 0.98 2.1E-05 39.9 6.3 68 502-575 26-95 (97)
238 PF02985 HEAT: HEAT repeat; I 89.7 0.46 9.9E-06 32.0 3.3 28 505-532 2-29 (31)
239 smart00744 RINGv The RING-vari 89.5 0.55 1.2E-05 35.6 3.9 41 267-307 1-49 (49)
240 KOG0827 Predicted E3 ubiquitin 89.5 0.28 6E-06 52.6 3.1 49 266-314 5-59 (465)
241 PF12530 DUF3730: Protein of u 89.4 25 0.00055 36.8 17.7 137 423-576 2-151 (234)
242 KOG1788 Uncharacterized conser 89.2 52 0.0011 40.7 21.1 289 422-735 467-785 (2799)
243 PF11698 V-ATPase_H_C: V-ATPas 89.2 0.32 7E-06 44.2 2.9 71 682-758 43-114 (119)
244 KOG2274 Predicted importin 9 [ 88.9 48 0.001 40.6 20.8 185 475-672 504-693 (1005)
245 PF04063 DUF383: Domain of unk 88.9 3 6.5E-05 42.0 9.8 124 650-783 6-157 (192)
246 KOG0828 Predicted E3 ubiquitin 88.5 0.33 7.2E-06 53.6 2.9 35 278-312 601-635 (636)
247 KOG1645 RING-finger-containing 88.4 0.21 4.7E-06 53.9 1.4 60 265-324 4-69 (463)
248 KOG2999 Regulator of Rac1, req 88.2 7.6 0.00016 44.3 13.1 153 465-624 86-242 (713)
249 PF07814 WAPL: Wings apart-lik 88.2 20 0.00043 40.3 17.0 91 464-554 23-116 (361)
250 PF05918 API5: Apoptosis inhib 88.0 15 0.00032 43.1 15.9 122 473-621 33-159 (556)
251 KOG1991 Nuclear transport rece 87.7 82 0.0018 39.1 26.1 326 420-804 409-759 (1010)
252 PF07814 WAPL: Wings apart-lik 87.6 17 0.00037 40.9 16.0 93 379-472 20-116 (361)
253 KOG2611 Neurochondrin/leucine- 87.4 37 0.0008 38.4 17.4 127 427-555 17-163 (698)
254 PF12719 Cnd3: Nuclear condens 86.6 15 0.00033 40.1 14.6 106 423-532 28-143 (298)
255 KOG3665 ZYG-1-like serine/thre 86.3 64 0.0014 39.7 20.9 194 706-918 494-695 (699)
256 COG5209 RCD1 Uncharacterized p 86.3 4.3 9.3E-05 40.8 8.8 103 698-801 115-217 (315)
257 PF11701 UNC45-central: Myosin 85.9 4.9 0.00011 39.2 9.2 146 505-666 5-157 (157)
258 KOG3161 Predicted E3 ubiquitin 85.4 0.42 9.1E-06 54.5 1.7 59 264-325 10-76 (861)
259 PF05918 API5: Apoptosis inhib 85.3 6.5 0.00014 46.0 11.2 90 743-875 35-124 (556)
260 KOG2956 CLIP-associating prote 85.3 18 0.00039 40.7 13.9 144 505-667 331-476 (516)
261 KOG2025 Chromosome condensatio 85.3 7.3 0.00016 45.8 11.3 92 742-875 97-189 (892)
262 PF14668 RICTOR_V: Rapamycin-i 84.9 4 8.7E-05 33.8 6.7 67 700-773 4-70 (73)
263 KOG1566 Conserved protein Mo25 84.9 60 0.0013 34.9 16.8 225 635-900 75-309 (342)
264 KOG1785 Tyrosine kinase negati 84.8 0.51 1.1E-05 50.6 1.9 45 267-311 371-416 (563)
265 KOG0883 Cyclophilin type, U bo 84.7 0.56 1.2E-05 50.3 2.1 72 265-344 40-111 (518)
266 PF12460 MMS19_C: RNAPII trans 84.6 82 0.0018 36.2 28.2 346 424-804 2-396 (415)
267 PF12719 Cnd3: Nuclear condens 84.5 20 0.00044 39.1 14.3 166 464-650 28-208 (298)
268 KOG2032 Uncharacterized conser 84.4 65 0.0014 36.8 17.7 255 512-801 267-530 (533)
269 PF11701 UNC45-central: Myosin 84.3 3 6.5E-05 40.7 6.9 146 685-874 6-157 (157)
270 KOG4172 Predicted E3 ubiquitin 84.1 0.43 9.4E-06 35.8 0.7 44 267-310 9-53 (62)
271 PF11789 zf-Nse: Zinc-finger o 84.0 0.35 7.6E-06 37.9 0.2 41 300-340 11-54 (57)
272 PF14570 zf-RING_4: RING/Ubox 83.8 1.1 2.4E-05 33.4 2.7 43 268-310 1-47 (48)
273 KOG1039 Predicted E3 ubiquitin 83.4 0.83 1.8E-05 49.9 2.8 50 263-312 159-222 (344)
274 KOG2611 Neurochondrin/leucine- 83.3 46 0.001 37.6 15.8 143 684-862 13-167 (698)
275 COG5627 MMS21 DNA repair prote 83.2 1.1 2.3E-05 44.9 3.2 66 265-330 189-260 (275)
276 KOG1967 DNA repair/transcripti 82.6 7.1 0.00015 47.3 10.1 153 639-798 867-1020(1030)
277 KOG1001 Helicase-like transcri 82.3 0.36 7.8E-06 58.0 -0.5 47 266-313 455-502 (674)
278 COG5209 RCD1 Uncharacterized p 81.5 65 0.0014 32.8 15.1 98 437-534 116-220 (315)
279 KOG2274 Predicted importin 9 [ 81.5 1.2E+02 0.0026 37.4 19.3 220 475-712 463-689 (1005)
280 KOG0414 Chromosome condensatio 81.4 12 0.00027 46.6 11.7 148 391-557 935-1084(1251)
281 COG5109 Uncharacterized conser 81.3 0.88 1.9E-05 47.4 1.9 42 265-306 336-382 (396)
282 KOG4653 Uncharacterized conser 81.2 27 0.00058 42.4 13.9 181 472-673 737-922 (982)
283 KOG0396 Uncharacterized conser 80.2 0.8 1.7E-05 49.2 1.2 49 265-313 330-381 (389)
284 KOG1967 DNA repair/transcripti 80.1 25 0.00055 42.9 13.4 149 462-618 867-1018(1030)
285 COG5194 APC11 Component of SCF 80.0 2.3 5E-05 34.9 3.5 43 267-310 33-80 (88)
286 KOG1243 Protein kinase [Genera 78.4 59 0.0013 38.8 15.5 227 411-666 284-513 (690)
287 PF14668 RICTOR_V: Rapamycin-i 78.1 4.3 9.4E-05 33.6 4.7 59 520-580 4-62 (73)
288 KOG4692 Predicted E3 ubiquitin 77.4 1.5 3.2E-05 46.5 2.1 45 263-308 420-464 (489)
289 PF06371 Drf_GBD: Diaphanous G 77.2 3.2 6.9E-05 41.7 4.6 81 537-623 100-186 (187)
290 COG5116 RPN2 26S proteasome re 77.0 4.2 9.1E-05 46.3 5.6 85 742-875 564-649 (926)
291 COG5116 RPN2 26S proteasome re 76.5 23 0.00051 40.6 11.1 152 600-785 521-674 (926)
292 PF11793 FANCL_C: FANCL C-term 76.3 0.62 1.3E-05 38.4 -0.8 46 265-310 2-65 (70)
293 smart00638 LPD_N Lipoprotein N 76.2 1.8E+02 0.004 35.0 21.5 160 504-701 394-567 (574)
294 KOG1820 Microtubule-associated 76.1 47 0.001 41.2 14.6 178 471-667 262-442 (815)
295 KOG3800 Predicted E3 ubiquitin 76.0 2 4.3E-05 44.8 2.6 31 282-312 22-52 (300)
296 KOG4653 Uncharacterized conser 75.9 47 0.001 40.4 13.9 213 561-800 741-962 (982)
297 PF14225 MOR2-PAG1_C: Cell mor 75.4 86 0.0019 33.4 14.8 178 724-957 60-251 (262)
298 KOG0825 PHD Zn-finger protein 75.1 0.69 1.5E-05 54.0 -1.0 49 264-313 122-173 (1134)
299 KOG1493 Anaphase-promoting com 75.1 1.2 2.6E-05 36.2 0.6 45 266-310 32-80 (84)
300 KOG2032 Uncharacterized conser 74.8 26 0.00057 39.8 10.9 160 722-918 252-414 (533)
301 PF11864 DUF3384: Domain of un 74.5 1.5E+02 0.0032 34.7 17.9 76 610-694 230-313 (464)
302 COG5098 Chromosome condensatio 74.2 41 0.00088 39.8 12.4 210 475-723 909-1124(1128)
303 PF12031 DUF3518: Domain of un 72.8 5.9 0.00013 40.7 5.0 86 699-789 140-232 (257)
304 PF06371 Drf_GBD: Diaphanous G 72.2 18 0.0004 36.1 8.7 84 669-758 94-186 (187)
305 PF06025 DUF913: Domain of Unk 71.0 34 0.00074 38.6 11.1 105 676-785 99-208 (379)
306 PF14447 Prok-RING_4: Prokaryo 70.7 2.2 4.8E-05 32.7 1.1 46 265-313 7-52 (55)
307 KOG1820 Microtubule-associated 70.4 28 0.00061 43.0 10.9 174 742-962 265-445 (815)
308 COG5218 YCG1 Chromosome conden 67.7 1E+02 0.0022 36.0 13.5 106 724-877 91-198 (885)
309 KOG2933 Uncharacterized conser 67.2 33 0.00071 36.7 9.1 138 381-530 89-232 (334)
310 PF11864 DUF3384: Domain of un 66.7 1.3E+02 0.0029 35.1 15.3 150 639-801 176-329 (464)
311 COG0497 RecN ATPase involved i 65.6 2.7E+02 0.0058 33.0 16.9 78 37-119 174-255 (557)
312 smart00638 LPD_N Lipoprotein N 65.4 70 0.0015 38.6 13.2 139 640-800 394-543 (574)
313 PF04641 Rtf2: Rtf2 RING-finge 65.3 6 0.00013 42.2 3.5 35 264-298 33-68 (260)
314 PF11707 Npa1: Ribosome 60S bi 65.1 70 0.0015 35.4 12.1 160 597-759 58-237 (330)
315 COG5175 MOT2 Transcriptional r 65.0 5.1 0.00011 42.3 2.8 46 268-313 17-66 (480)
316 COG5219 Uncharacterized conser 65.0 2.8 6E-05 50.3 1.0 44 267-310 1471-1522(1525)
317 PF01347 Vitellogenin_N: Lipop 65.0 37 0.00081 41.4 10.9 139 640-800 432-587 (618)
318 KOG0301 Phospholipase A2-activ 63.8 1E+02 0.0022 36.5 12.9 163 561-735 558-727 (745)
319 PF10363 DUF2435: Protein of u 63.3 21 0.00045 31.2 5.8 68 597-668 5-72 (92)
320 KOG2956 CLIP-associating prote 63.2 2.8E+02 0.006 31.8 15.7 141 640-801 330-476 (516)
321 PF12031 DUF3518: Domain of un 62.8 19 0.00042 37.1 6.3 80 436-515 139-228 (257)
322 PF14569 zf-UDP: Zinc-binding 62.4 9.3 0.0002 31.5 3.2 50 264-313 8-64 (80)
323 PF08324 PUL: PUL domain; Int 61.9 20 0.00043 38.4 6.9 153 425-578 67-233 (268)
324 KOG4362 Transcriptional regula 61.0 4.1 8.9E-05 48.2 1.4 66 264-329 20-87 (684)
325 PF11707 Npa1: Ribosome 60S bi 60.9 1.6E+02 0.0036 32.5 14.0 165 684-877 58-239 (330)
326 cd03569 VHS_Hrs_Vps27p VHS dom 60.0 26 0.00056 33.4 6.4 72 640-711 42-113 (142)
327 KOG1020 Sister chromatid cohes 59.5 56 0.0012 42.4 10.5 140 640-802 817-960 (1692)
328 cd03568 VHS_STAM VHS domain fa 58.6 31 0.00066 33.0 6.7 72 640-711 38-109 (144)
329 KOG0301 Phospholipase A2-activ 57.9 2.8E+02 0.0062 33.1 15.0 162 390-557 555-729 (745)
330 COG5218 YCG1 Chromosome conden 57.8 71 0.0015 37.2 10.1 103 596-707 92-194 (885)
331 PF08167 RIX1: rRNA processing 57.5 72 0.0016 31.3 9.3 107 422-531 26-142 (165)
332 KOG3665 ZYG-1-like serine/thre 57.1 1.1E+02 0.0025 37.5 12.8 191 485-705 494-690 (699)
333 KOG0298 DEAD box-containing he 56.0 3.8 8.3E-05 51.4 0.0 44 264-308 1152-1196(1394)
334 KOG4464 Signaling protein RIC- 56.0 3.4E+02 0.0073 30.5 17.4 108 652-760 110-232 (532)
335 PF08324 PUL: PUL domain; Int 55.9 86 0.0019 33.5 10.5 149 394-542 78-241 (268)
336 PF01347 Vitellogenin_N: Lipop 55.1 1.9E+02 0.0041 35.2 14.6 170 421-621 395-586 (618)
337 PF12530 DUF3730: Protein of u 55.0 2.7E+02 0.0058 29.1 16.9 125 392-531 14-150 (234)
338 PF11865 DUF3385: Domain of un 54.3 80 0.0017 30.8 8.9 37 682-718 10-47 (160)
339 KOG1243 Protein kinase [Genera 53.2 96 0.0021 37.1 10.6 188 679-920 327-515 (690)
340 KOG1940 Zn-finger protein [Gen 53.1 9 0.00019 40.5 2.2 44 264-308 157-204 (276)
341 KOG4265 Predicted E3 ubiquitin 53.1 9.1 0.0002 41.5 2.3 46 265-311 290-336 (349)
342 cd03561 VHS VHS domain family; 53.1 46 0.001 31.3 6.9 73 640-712 38-112 (133)
343 KOG4185 Predicted E3 ubiquitin 53.0 11 0.00024 41.2 3.0 62 267-328 5-77 (296)
344 KOG2114 Vacuolar assembly/sort 52.1 27 0.00058 42.3 6.0 41 264-308 839-880 (933)
345 smart00288 VHS Domain present 51.9 40 0.00087 31.7 6.2 71 640-710 38-109 (133)
346 cd03568 VHS_STAM VHS domain fa 51.4 43 0.00094 32.0 6.4 70 847-918 37-108 (144)
347 PLN02189 cellulose synthase 50.7 11 0.00024 47.0 2.7 47 265-311 34-87 (1040)
348 cd03569 VHS_Hrs_Vps27p VHS dom 50.7 46 0.001 31.7 6.5 70 847-918 41-112 (142)
349 KOG4275 Predicted E3 ubiquitin 50.2 3.7 8E-05 42.7 -1.1 39 265-310 300-341 (350)
350 COG5098 Chromosome condensatio 50.2 45 0.00097 39.4 7.2 105 849-959 301-414 (1128)
351 KOG1566 Conserved protein Mo25 49.9 3.7E+02 0.0081 29.2 14.8 201 457-667 74-285 (342)
352 KOG1571 Predicted E3 ubiquitin 48.9 8.1 0.00018 41.9 1.1 43 264-310 304-346 (355)
353 PF11865 DUF3385: Domain of un 48.5 1.6E+02 0.0034 28.8 9.9 143 464-622 12-155 (160)
354 COG1675 TFA1 Transcription ini 48.0 21 0.00045 35.2 3.7 54 262-331 110-164 (176)
355 PF00790 VHS: VHS domain; Int 47.3 44 0.00095 31.8 5.8 70 640-709 43-115 (140)
356 PRK12495 hypothetical protein; 47.0 41 0.00089 34.0 5.5 13 264-276 41-53 (226)
357 PLN02195 cellulose synthase A 46.8 14 0.0003 45.9 2.7 45 267-311 8-59 (977)
358 PF14500 MMS19_N: Dos2-interac 46.7 3.9E+02 0.0084 28.5 14.7 216 427-671 5-240 (262)
359 cd03567 VHS_GGA VHS domain fam 46.5 61 0.0013 30.8 6.5 69 848-918 39-114 (139)
360 cd03561 VHS VHS domain family; 45.8 70 0.0015 30.1 6.9 69 848-918 38-110 (133)
361 KOG2930 SCF ubiquitin ligase, 45.8 19 0.0004 31.5 2.5 27 282-309 80-106 (114)
362 cd03567 VHS_GGA VHS domain fam 45.2 68 0.0015 30.4 6.6 70 640-709 39-113 (139)
363 PF05605 zf-Di19: Drought indu 45.1 19 0.00041 27.8 2.4 38 264-308 1-39 (54)
364 PF06416 DUF1076: Protein of u 44.5 16 0.00035 32.4 2.1 53 261-314 36-94 (113)
365 PF05883 Baculo_RING: Baculovi 44.4 18 0.00039 33.6 2.5 51 265-316 26-85 (134)
366 PF08167 RIX1: rRNA processing 44.0 1.7E+02 0.0036 28.7 9.5 107 464-576 27-143 (165)
367 PF12252 SidE: Dot/Icm substra 43.7 2.7E+02 0.0059 35.0 12.4 142 79-228 1014-1165(1439)
368 PF14446 Prok-RING_1: Prokaryo 43.6 19 0.00041 27.8 2.0 29 265-293 5-37 (54)
369 KOG1949 Uncharacterized conser 43.2 2.2E+02 0.0048 34.1 11.3 136 742-920 186-331 (1005)
370 PF10363 DUF2435: Protein of u 42.2 51 0.0011 28.8 4.9 67 465-532 6-72 (92)
371 TIGR00373 conserved hypothetic 42.1 17 0.00036 35.5 2.0 36 263-314 107-142 (158)
372 PRK11088 rrmA 23S rRNA methylt 42.0 10 0.00023 40.7 0.7 26 265-290 2-30 (272)
373 PF14353 CpXC: CpXC protein 41.3 14 0.00031 34.4 1.5 46 265-310 1-48 (128)
374 PLN02436 cellulose synthase A 40.3 20 0.00044 44.9 2.8 48 264-311 35-89 (1094)
375 PF14726 RTTN_N: Rotatin, an a 39.6 1.5E+02 0.0033 26.2 7.3 67 502-571 29-95 (98)
376 KOG1814 Predicted E3 ubiquitin 39.1 34 0.00074 37.8 4.0 34 264-297 183-219 (445)
377 PRK06266 transcription initiat 39.1 24 0.00052 35.1 2.7 52 264-331 116-168 (178)
378 KOG4464 Signaling protein RIC- 39.1 6.1E+02 0.013 28.6 16.4 139 642-784 48-198 (532)
379 KOG1848 Uncharacterized conser 39.0 4.9E+02 0.011 34.1 14.0 112 593-712 838-958 (1610)
380 smart00531 TFIIE Transcription 38.9 16 0.00035 35.1 1.4 37 264-312 98-135 (147)
381 KOG1525 Sister chromatid cohes 38.9 1.1E+03 0.023 31.4 21.8 184 724-957 259-450 (1266)
382 PF05290 Baculo_IE-1: Baculovi 38.7 39 0.00085 31.2 3.6 48 265-312 80-133 (140)
383 KOG4231 Intracellular membrane 38.0 29 0.00063 39.3 3.2 61 512-575 337-398 (763)
384 PLN02638 cellulose synthase A 37.3 22 0.00047 44.7 2.4 48 264-311 16-70 (1079)
385 COG5656 SXM1 Importin, protein 37.0 8.7E+02 0.019 29.8 17.9 121 420-542 407-538 (970)
386 KOG2137 Protein kinase [Signal 36.9 1.3E+02 0.0029 36.1 8.5 131 421-556 389-520 (700)
387 PF11791 Aconitase_B_N: Aconit 36.9 97 0.0021 29.6 6.0 27 546-575 96-122 (154)
388 smart00288 VHS Domain present 36.3 1.1E+02 0.0023 28.9 6.4 69 848-918 38-109 (133)
389 PHA03247 large tegument protei 35.9 1.5E+03 0.033 32.3 19.3 84 8-91 1446-1532(3151)
390 PF08216 CTNNBL: Catenin-beta- 35.9 41 0.00088 30.2 3.3 44 395-439 62-105 (108)
391 PHA02825 LAP/PHD finger-like p 35.7 43 0.00094 32.1 3.6 47 264-311 7-59 (162)
392 KOG2933 Uncharacterized conser 35.1 1.1E+02 0.0023 33.0 6.7 135 467-620 93-230 (334)
393 KOG0825 PHD Zn-finger protein 34.8 50 0.0011 39.5 4.6 64 260-340 91-166 (1134)
394 TIGR00634 recN DNA repair prot 34.7 8.8E+02 0.019 29.1 18.6 77 40-121 181-263 (563)
395 PF11791 Aconitase_B_N: Aconit 33.7 1.4E+02 0.0031 28.5 6.6 28 848-875 95-122 (154)
396 PF12830 Nipped-B_C: Sister ch 33.3 75 0.0016 31.9 5.2 64 848-919 9-73 (187)
397 KOG3002 Zn finger protein [Gen 33.3 41 0.00088 36.4 3.4 60 262-328 45-105 (299)
398 PF12231 Rif1_N: Rap1-interact 33.2 5.1E+02 0.011 29.2 12.5 135 696-875 59-203 (372)
399 PF14631 FancD2: Fanconi anaem 33.1 1.4E+03 0.03 31.0 18.5 56 742-802 447-502 (1426)
400 COG4530 Uncharacterized protei 33.1 27 0.00059 30.7 1.7 29 266-294 10-43 (129)
401 PF08271 TF_Zn_Ribbon: TFIIB z 32.4 9.6 0.00021 27.9 -1.0 21 298-318 17-37 (43)
402 PHA02862 5L protein; Provision 32.4 44 0.00095 31.4 2.9 57 267-330 4-66 (156)
403 KOG2137 Protein kinase [Signal 32.4 8.2E+02 0.018 29.8 13.9 134 639-787 389-522 (700)
404 PLN03076 ARF guanine nucleotid 31.5 1.6E+03 0.035 31.2 20.2 177 520-710 1109-1297(1780)
405 KOG2462 C2H2-type Zn-finger pr 31.3 21 0.00045 37.4 0.8 54 259-312 155-227 (279)
406 PRK10869 recombination and rep 31.3 9.8E+02 0.021 28.6 18.9 76 41-121 178-256 (553)
407 KOG0413 Uncharacterized conser 31.2 1.2E+03 0.026 29.6 24.7 126 744-921 945-1074(1529)
408 PLN02915 cellulose synthase A 30.8 30 0.00066 43.3 2.2 47 265-311 15-68 (1044)
409 PF14500 MMS19_N: Dos2-interac 30.4 6.9E+02 0.015 26.6 16.3 218 549-801 4-236 (262)
410 PF12660 zf-TFIIIC: Putative z 29.8 4.2 9.1E-05 36.1 -3.9 44 267-310 16-65 (99)
411 PF14726 RTTN_N: Rotatin, an a 29.6 3.9E+02 0.0085 23.7 8.3 64 420-483 29-92 (98)
412 PF13251 DUF4042: Domain of un 29.3 4E+02 0.0088 26.6 9.4 109 597-712 42-174 (182)
413 KOG4718 Non-SMC (structural ma 29.0 35 0.00075 34.1 1.8 46 266-312 182-228 (235)
414 PF10367 Vps39_2: Vacuolar sor 28.7 73 0.0016 28.4 3.9 32 262-293 75-108 (109)
415 PRK09169 hypothetical protein; 28.2 1.9E+03 0.041 31.0 36.2 20 512-531 325-344 (2316)
416 KOG1949 Uncharacterized conser 28.2 5.1E+02 0.011 31.3 11.1 185 599-801 178-369 (1005)
417 PF08506 Cse1: Cse1; InterPro 28.2 2.7E+02 0.0057 31.4 9.0 143 641-797 212-370 (370)
418 KOG0413 Uncharacterized conser 28.1 1.3E+03 0.029 29.2 21.1 66 849-920 618-685 (1529)
419 PRK09169 hypothetical protein; 27.1 2E+03 0.043 30.8 34.3 23 515-537 286-308 (2316)
420 PRK00420 hypothetical protein; 27.1 34 0.00073 31.0 1.3 27 266-310 24-50 (112)
421 KOG3579 Predicted E3 ubiquitin 27.0 31 0.00067 36.0 1.2 41 264-304 267-315 (352)
422 KOG4739 Uncharacterized protei 26.8 23 0.0005 36.4 0.3 49 276-329 15-64 (233)
423 PF09324 DUF1981: Domain of un 26.7 1.9E+02 0.0041 24.8 5.9 67 844-917 14-85 (86)
424 cd08329 CARD_BIRC2_BIRC3 Caspa 26.5 1.6E+02 0.0034 25.8 5.4 61 36-97 8-69 (94)
425 smart00834 CxxC_CXXC_SSSS Puta 26.3 42 0.00091 23.9 1.5 35 262-310 2-36 (41)
426 PF06685 DUF1186: Protein of u 26.0 8E+02 0.017 25.9 11.9 121 636-777 70-201 (249)
427 PF08216 CTNNBL: Catenin-beta- 25.4 83 0.0018 28.3 3.4 42 480-521 64-105 (108)
428 PF00790 VHS: VHS domain; Int 25.4 1.5E+02 0.0033 28.1 5.6 70 847-918 42-116 (140)
429 PF06685 DUF1186: Protein of u 25.3 8.2E+02 0.018 25.8 12.5 82 680-771 71-153 (249)
430 PRK01343 zinc-binding protein; 25.0 74 0.0016 24.9 2.6 36 265-300 9-44 (57)
431 PF13251 DUF4042: Domain of un 24.8 7.1E+02 0.015 24.9 13.3 61 606-667 113-173 (182)
432 PF09723 Zn-ribbon_8: Zinc rib 24.8 16 0.00035 26.6 -0.9 31 263-308 3-34 (42)
433 PF12906 RINGv: RING-variant d 24.6 35 0.00075 25.6 0.8 29 278-306 13-47 (47)
434 cd00350 rubredoxin_like Rubred 23.5 57 0.0012 22.3 1.6 10 300-309 17-26 (33)
435 smart00567 EZ_HEAT E-Z type HE 23.4 77 0.0017 20.7 2.2 14 788-801 2-15 (30)
436 PF10274 ParcG: Parkin co-regu 23.3 5.2E+02 0.011 25.8 8.8 73 848-922 39-111 (183)
437 cd08330 CARD_ASC_NALP1 Caspase 23.3 3.6E+02 0.0078 22.9 6.8 53 40-93 4-56 (82)
438 PF06012 DUF908: Domain of Unk 23.2 3.1E+02 0.0067 30.3 8.3 65 477-541 237-306 (329)
439 PF12726 SEN1_N: SEN1 N termin 22.8 1E+03 0.022 29.6 13.7 108 422-532 442-553 (727)
440 PF13001 Ecm29: Proteasome sta 22.8 5E+02 0.011 30.6 10.4 170 561-760 251-444 (501)
441 PF04499 SAPS: SIT4 phosphatas 22.3 3.9E+02 0.0086 31.2 9.2 95 762-875 51-147 (475)
442 COG1592 Rubrerythrin [Energy p 22.2 59 0.0013 31.8 2.0 26 265-310 134-159 (166)
443 PLN02400 cellulose synthase 22.0 52 0.0011 41.6 2.1 48 264-311 35-89 (1085)
444 KOG1992 Nuclear export recepto 22.0 1.6E+03 0.035 28.0 24.4 127 385-524 11-147 (960)
445 PF10272 Tmpp129: Putative tra 21.7 59 0.0013 36.0 2.2 32 280-311 303-351 (358)
446 PF08506 Cse1: Cse1; InterPro 21.6 5E+02 0.011 29.3 9.6 131 696-871 224-370 (370)
447 PF14225 MOR2-PAG1_C: Cell mor 21.5 1E+03 0.022 25.4 18.5 166 462-651 60-240 (262)
448 COG1885 Uncharacterized protei 21.4 33 0.00072 29.9 0.1 23 299-321 48-70 (115)
449 KOG1812 Predicted E3 ubiquitin 21.2 76 0.0016 35.9 3.0 33 265-297 146-182 (384)
450 cd00729 rubredoxin_SM Rubredox 21.2 65 0.0014 22.2 1.5 12 266-277 3-14 (34)
451 PF13248 zf-ribbon_3: zinc-rib 21.2 66 0.0014 20.6 1.5 12 299-310 15-26 (26)
452 COG3813 Uncharacterized protei 21.1 95 0.0021 25.2 2.6 32 284-318 28-59 (84)
453 PRK03922 hypothetical protein; 20.9 34 0.00075 30.3 0.1 21 299-319 48-68 (113)
454 PF14205 Cys_rich_KTR: Cystein 20.9 71 0.0015 24.6 1.8 11 264-274 3-13 (55)
455 PF00096 zf-C2H2: Zinc finger, 20.8 27 0.00059 21.2 -0.4 13 266-278 1-13 (23)
456 PF04821 TIMELESS: Timeless pr 20.8 1E+03 0.022 25.3 12.6 186 462-692 13-239 (266)
457 cd08325 CARD_CASP1-like Caspas 20.7 3.2E+02 0.0069 23.3 6.0 58 39-97 2-63 (83)
458 cd08050 TAF6 TATA Binding Prot 20.6 5.9E+02 0.013 28.4 9.8 110 464-574 212-338 (343)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.9e-46 Score=465.45 Aligned_cols=591 Identities=20% Similarity=0.246 Sum_probs=481.1
Q ss_pred HHHHHhHHHHHHHhhhcchhhHHHHhcccchhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHH
Q 002091 350 EEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVT 428 (968)
Q Consensus 350 ~~~~~aL~~l~~~~~~~~~~r~~~~i~~~~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 428 (968)
.....++.+|..+.++++.||.++ ++..|+++.|+..|++ +...+..|+..|.++++.++++..|.. .|+||+|+.
T Consensus 30 ~~~~~Al~~Lr~Lak~~~enR~~I--a~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~-~GaIppLV~ 106 (2102)
T PLN03200 30 QEKELTTARLLELAKTREEARKAI--GSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLL-GGCIPPLLS 106 (2102)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHH--HHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHH-cCChHHHHH
Confidence 344568999999999999999876 4338999999999965 566889999999999999999999998 899999999
Q ss_pred hhcCCCHHHHHHHHHHHHhccCC---chhH-HHHHhCCchHHHHHHHhcCC---HHHHHHHHHHHHHhccCchhhH-HHh
Q 002091 429 MASSDDNQASRDAQELLENLSFS---DDNV-VQMAKANYFKHLLQRLSAGP---ESVKMRMATTLAEMELTDHHKA-SLL 500 (968)
Q Consensus 429 lL~s~~~~~~~~a~~~L~~Ls~~---~~n~-~~i~~~g~v~~Lv~~L~~~~---~~~~~~aa~~L~~L~~~~~~~~-~i~ 500 (968)
+|++++.+.+++|+.+|.+|+.+ +.++ ..+++.|++++|+.+|+.++ ..++..++.+|++|+..++++. .+.
T Consensus 107 LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~II 186 (2102)
T PLN03200 107 LLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL 186 (2102)
T ss_pred HHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 99999999999999999999965 4445 44568999999999999984 2356778899999998888775 567
Q ss_pred hcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091 501 EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 579 (968)
Q Consensus 501 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 579 (968)
+.|+++.|+.+|+++++..+..|+++|.+++. .++.+..+++.|+||.|+++|.+++ ++.++++|+++|.||+.++.
T Consensus 187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~--~~~VRE~AA~AL~nLAs~s~ 264 (2102)
T PLN03200 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN--EVSVRAEAAGALEALSSQSK 264 (2102)
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC--ChHHHHHHHHHHHHHhcCCH
Confidence 89999999999999999999999999999985 4678999999999999999998654 25899999999999998643
Q ss_pred cccCCCCccccccchhHHHHHHHhhccCC---------HHHHHHHHHHHHHhccCCCh----------------------
Q 002091 580 YQESSQTPVTLLESDKEIFMLFSLINLTG---------PNVQQRILQTFNALCRSPSA---------------------- 628 (968)
Q Consensus 580 ~~~~~~~~~~il~~~~~i~~l~~ll~~~~---------~~~~~~al~~L~~L~~~~~~---------------------- 628 (968)
... ..+...|+++.|+.++...+ ..++++++|+|.|+|++...
T Consensus 265 e~r------~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~ 338 (2102)
T PLN03200 265 EAK------QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTL 338 (2102)
T ss_pred HHH------HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHH
Confidence 222 24666788999999887443 44688999999998873110
Q ss_pred -------------------------------------------------------hhHHHHHhhcCchHHHHHhhccCCh
Q 002091 629 -------------------------------------------------------GNIKTTLTQCSAIPVLVQLCEHDNE 653 (968)
Q Consensus 629 -------------------------------------------------------~~~~~~i~~~g~i~~Lv~ll~~~~~ 653 (968)
...+..+.+.++++.|+.++...+.
T Consensus 339 gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~ 418 (2102)
T PLN03200 339 GALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATA 418 (2102)
T ss_pred hhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCH
Confidence 0001123344566677777777778
Q ss_pred hHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHH
Q 002091 654 NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNF 732 (968)
Q Consensus 654 ~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~l 732 (968)
+++..++++|++|+ .++++.+..+.+.|+++.|+++|.+. +...+..|+++|++|+. +++.+..++++|+++.|+++
T Consensus 419 evQ~~Av~aL~~L~-~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 419 DVQEELIRALSSLC-CGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred HHHHHHHHHHHHHh-CCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 89999999999999 77788889999999999999999984 66899999999999998 88899999999999999999
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCC----
Q 002091 733 LKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLS---- 808 (968)
Q Consensus 733 L~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~---- 808 (968)
|.+ ++..++++|+|+|+|++.. +++.+..+.++|++|.|+++|.++++++|..|+|+|.|+......-.
T Consensus 497 L~s------~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~L 569 (2102)
T PLN03200 497 LET------GSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQL 569 (2102)
T ss_pred HcC------CCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 998 5688999999999999996 67777778899999999999999999999999999999974332100
Q ss_pred -----CCC----------------------------CCCCccccc---CCCCC-----cccccC--CCccCcccchHHhh
Q 002091 809 -----RPI----------------------------PKRKGFWCF---SPPPE-----IGCQVH--GGLCGIESSFCLLE 845 (968)
Q Consensus 809 -----~~~----------------------------~~~~~~~~~---~~~~~-----~~c~~h--~~~c~~~~~~~l~~ 845 (968)
... ...+|.-.+ ..+.. .-|-+- -..++.++...++.
T Consensus 570 v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ 649 (2102)
T PLN03200 570 TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT 649 (2102)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 000 000110000 00000 001110 11224555667889
Q ss_pred cCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhH
Q 002091 846 ANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFK 925 (968)
Q Consensus 846 ~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 925 (968)
.|+|+||+.+|.+++.+++..+++||.+++.+. ..+....+.+.|++++|++++.+.+.++.+.|+.+|.+++.+.+.+
T Consensus 650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~-~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~ 728 (2102)
T PLN03200 650 DEIINPCIKLLTNNTEAVATQSARALAALSRSI-KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728 (2102)
T ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence 999999999999999999999999999999321 2245567789999999999999999999999999999999999988
Q ss_pred HHhccc-CCchhhhhcccCCchhhHHHHHHHHHHhhc
Q 002091 926 QKYGKS-AQMPLVDLTQRGNSSMKSLSARVLAHLNVL 961 (968)
Q Consensus 926 ~~~~~~-~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~ 961 (968)
.++... +..+|++++++|+++.|+.|+++|.+|.+-
T Consensus 729 ~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 729 AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 877754 488899999999999999999999999754
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=446.98 Aligned_cols=531 Identities=21% Similarity=0.232 Sum_probs=434.6
Q ss_pred chhHHHHHHhhcc---ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchh
Q 002091 379 DDAVESIVRSLGR---RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDN 454 (968)
Q Consensus 379 ~~~v~~lv~~L~~---~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n 454 (968)
...+..+++.|.. +++.++.|+..|+.+++ ++++|..|++..|+||.|+.+|++++..++++|+.+|.+++.+++|
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 3445667777743 45789999999999999 8889999987689999999999999999999999999999999999
Q ss_pred HHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC---chhhHHH-hhcCchHHHHHhhhcCC---HHHHHHHHHHH
Q 002091 455 VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT---DHHKASL-LEGNVLGPLLHLVSRGD---IQMKKVAVKAL 527 (968)
Q Consensus 455 ~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~---~~~~~~i-~~~g~i~~Lv~lL~~~~---~~~~~~a~~aL 527 (968)
+..++..|++++|+.+|++|+++.|++|+++|++|+.+ ++++..+ ...|+||+|+.++++++ ..++..++.+|
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876 5556554 46999999999999874 34667888999
Q ss_pred HHhcCCCccHH-HHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc-ccccCCCCccccccchhHHHHHHHhhc
Q 002091 528 RNLSSVPQNGL-QMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST-MYQESSQTPVTLLESDKEIFMLFSLIN 605 (968)
Q Consensus 528 ~~Ls~~~~~~~-~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~~il~~~~~i~~l~~ll~ 605 (968)
+||+.+++++. .++++|+|+.|+.+|.+++ +.++.+|+++|.+++.+. +.+. .+...|+++.|+.+++
T Consensus 172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d---~~lQ~eAa~aLa~Lass~ee~~~-------aVIeaGaVP~LV~LL~ 241 (2102)
T PLN03200 172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGN---SDAQANAASLLARLMMAFESSIS-------KVLDAGAVKQLLKLLG 241 (2102)
T ss_pred HHHhcCccchHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCChHHHH-------HHHHCCCHHHHHHHHc
Confidence 99999888874 5689999999999998765 889999999999988753 3333 3456788999999997
Q ss_pred c-CCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCC---------hhHHHHHHHHHHHhccCCCh---
Q 002091 606 L-TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN---------ENVRANAVKLFCCLVDDGDE--- 672 (968)
Q Consensus 606 ~-~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~---------~~v~~~a~~~L~~Ls~~~~~--- 672 (968)
+ .++.++++|+|+|.++++. +.+.+..+.+.|+++.|++++..++ ..++++|+|+|.|++.....
T Consensus 242 sg~~~~VRE~AA~AL~nLAs~--s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~ 319 (2102)
T PLN03200 242 QGNEVSVRAEAAGALEALSSQ--SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALIL 319 (2102)
T ss_pred cCCChHHHHHHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHH
Confidence 5 5679999999999999974 6788889999999999999997654 34699999999999843111
Q ss_pred ---------hHH----------HH-------------hhcc-ccHHHHHHHhccC-------------------------
Q 002091 673 ---------AII----------RE-------------HVGQ-KCLETLVTIIQSS------------------------- 694 (968)
Q Consensus 673 ---------~~~----------~~-------------~~~~-~~i~~Lv~lL~~~------------------------- 694 (968)
+.. .. .++. .+.+.|++++++.
T Consensus 320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~ 399 (2102)
T PLN03200 320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRK 399 (2102)
T ss_pred HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHH
Confidence 000 00 0111 1123344433322
Q ss_pred ----------------CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhc
Q 002091 695 ----------------HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRF 757 (968)
Q Consensus 695 ----------------~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L 757 (968)
.+.+++..++++|++|+. +.+.++.+.+.|+++.|+++|.+ .+..+++.++++|+++
T Consensus 400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s------~s~~iQ~~A~~~L~nL 473 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL------SSEQQQEYAVALLAIL 473 (2102)
T ss_pred HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHH
Confidence 235688899999999998 89999999999999999999999 5678899999999999
Q ss_pred cCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCc
Q 002091 758 TAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGI 837 (968)
Q Consensus 758 ~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~ 837 (968)
+.+ +++.+..+.++|++|.|+++|.++++.+|+.|+|+|.|++.+ .
T Consensus 474 a~~-ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~---------------------------------~ 519 (2102)
T PLN03200 474 TDE-VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH---------------------------------S 519 (2102)
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---------------------------------c
Confidence 987 788899999999999999999999999999999999999842 2
Q ss_pred ccchH-HhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-ccccc----------------ch--------------h--
Q 002091 838 ESSFC-LLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERL----------------QN--------------G-- 883 (968)
Q Consensus 838 ~~~~~-l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~----------------~~--------------~-- 883 (968)
++... +.++|++++|+++|.++++.+++.|+++|.+++ .+... .. .
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 23334 447899999999999999999999999999997 32210 00 0
Q ss_pred --hHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh-hhHHH-hcccCCchhhhhcccCCchhhHHHHHHHHHHh
Q 002091 884 --SKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP-EFKQK-YGKSAQMPLVDLTQRGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 884 --~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~-~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~ 959 (968)
.......||++.|++++.++++.+++.|+|+|.+++... +.... ....++++|+.++.+++.++++.|+.+|.+|.
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 011124689999999999999999999999999999654 33333 33456899999999999999999999999987
Q ss_pred hc
Q 002091 960 VL 961 (968)
Q Consensus 960 ~~ 961 (968)
..
T Consensus 680 ~~ 681 (2102)
T PLN03200 680 RS 681 (2102)
T ss_pred hC
Confidence 53
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-39 Score=351.29 Aligned_cols=410 Identities=20% Similarity=0.312 Sum_probs=351.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhccCCc--hhHHHHHhCCchHHHHHHHhcC-CHHHHHHHHHHHHHhccCc-hhhHH
Q 002091 423 ILLLVTMASSDDNQASRDAQELLENLSFSD--DNVVQMAKANYFKHLLQRLSAG-PESVKMRMATTLAEMELTD-HHKAS 498 (968)
Q Consensus 423 i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~--~n~~~i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~~-~~~~~ 498 (968)
.+.++..+.|++...+..+...+..+-..+ +........|.++.+|..|..+ ++.++.+|||+|.++++.. +.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 566777788899988988998888885333 3455555669999999999755 5899999999999997654 44456
Q ss_pred HhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcC
Q 002091 499 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 577 (968)
Q Consensus 499 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 577 (968)
+++.|++|.++.++.+++..+++.|+|||+|++. .+..|..+++.|++++|+.++..... ..+..+++|+|.||+.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~--~~~lRn~tW~LsNlcr- 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK--LSMLRNATWTLSNLCR- 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc--hHHHHHHHHHHHHHHc-
Confidence 7789999999999999999999999999999995 66789999999999999999986541 2344555555555554
Q ss_pred cccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHH
Q 002091 578 TMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRA 657 (968)
Q Consensus 578 ~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~ 657 (968)
+..+..--..+. .++|.|..++.+.|+++..
T Consensus 225 -----------------------------------------------gk~P~P~~~~v~--~iLp~L~~ll~~~D~~Vl~ 255 (514)
T KOG0166|consen 225 -----------------------------------------------GKNPSPPFDVVA--PILPALLRLLHSTDEEVLT 255 (514)
T ss_pred -----------------------------------------------CCCCCCcHHHHH--HHHHHHHHHHhcCCHHHHH
Confidence 332222112222 4799999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcC
Q 002091 658 NAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNG 736 (968)
Q Consensus 658 ~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~ 736 (968)
.|+|+|++|+ +++++.++.+++.|+++.|+.+|.+.+ ..++.+|+++++|++. ++..++.+++.|+++.|..++...
T Consensus 256 Da~WAlsyLs-dg~ne~iq~vi~~gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s 333 (514)
T KOG0166|consen 256 DACWALSYLT-DGSNEKIQMVIDAGVVPRLVDLLGHSS-PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS 333 (514)
T ss_pred HHHHHHHHHh-cCChHHHHHHHHccchHHHHHHHcCCC-cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC
Confidence 9999999999 999999999999999999999999964 4588999999999999 999999999999999999999952
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 002091 737 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKG 816 (968)
Q Consensus 737 ~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~ 816 (968)
+...++++|||+++|++++ +++..+.+++.|++|.|+.+|++++..+|++|+|+++|++. +|
T Consensus 334 -----~~~~ikkEAcW~iSNItAG-~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts------------~g 395 (514)
T KOG0166|consen 334 -----PKESIKKEACWTISNITAG-NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS------------SG 395 (514)
T ss_pred -----cchhHHHHHHHHHHHhhcC-CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc------------cC
Confidence 5566999999999999998 99999999999999999999999999999999999999983 33
Q ss_pred ccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-ccccc-----chhhHHHHhc
Q 002091 817 FWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERL-----QNGSKVLEDA 890 (968)
Q Consensus 817 ~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~-----~~~~~~i~~~ 890 (968)
++++...|++.|+|++|+++|.-.|..+...++.+|.++. .++.. ..+...|.+.
T Consensus 396 -------------------~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ 456 (514)
T KOG0166|consen 396 -------------------TPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEA 456 (514)
T ss_pred -------------------CHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHc
Confidence 7889999999999999999999999999999999999999 44332 4568899999
Q ss_pred CcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 891 NAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 891 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
||+++|..|..+.|.+++++|..++.++|..++
T Consensus 457 ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 457 GGLDKIENLQSHENEEIYKKAYKIIDTYFSEED 489 (514)
T ss_pred cChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999998763
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-39 Score=326.19 Aligned_cols=419 Identities=19% Similarity=0.253 Sum_probs=354.8
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhcc--CCchhHHHHHhCCchHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhhH-
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLS--FSDDNVVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMELTDHHKA- 497 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls--~~~~n~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~~~~~~~- 497 (968)
-+|.|..-|.|+|.+.+..|+.-...+- .+.+....++.+|.++.+++++.. .....+-+|+|+|.++++....+.
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 3688888899999999999988888774 234457778899999999999954 456678899999999977654444
Q ss_pred HHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 498 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
.+++.|++|.++++|.+++.++++.+.|||+|++. .+..|+.+.+.|++++++.++.+.... ..+.
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~-isml------------ 218 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH-ISML------------ 218 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch-HHHH------------
Confidence 35579999999999999999999999999999995 567789999999999999999854311 2233
Q ss_pred CcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHH
Q 002091 577 STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVR 656 (968)
Q Consensus 577 ~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~ 656 (968)
.++.|+|.|||+...++.--..+. .++|.|.+++-+.++++.
T Consensus 219 ------------------------------------Rn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLiys~D~evl 260 (526)
T COG5064 219 ------------------------------------RNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLIYSRDPEVL 260 (526)
T ss_pred ------------------------------------HHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHHhhcCHHHH
Confidence 445566666665543333333443 369999999999999999
Q ss_pred HHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhc
Q 002091 657 ANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKN 735 (968)
Q Consensus 657 ~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~ 735 (968)
..|+|++.+|+ +++.+.++.+++.|..+.|+++|.+. +..++.+|++.++|+.. ++..++.+++.|+++.+..+|.+
T Consensus 261 vDA~WAiSYls-Dg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~ 338 (526)
T COG5064 261 VDACWAISYLS-DGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS 338 (526)
T ss_pred HHHHHHHHHhc-cCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC
Confidence 99999999999 99999999999999999999999984 56789999999999999 99999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 002091 736 GRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRK 815 (968)
Q Consensus 736 ~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~ 815 (968)
+...+++.+||+++|++++ +.+..+.+++.+.+|.|+.+|.+.+..+|++||||+.|..... +
T Consensus 339 ------~ke~irKEaCWTiSNITAG-nteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg--~-------- 401 (526)
T COG5064 339 ------PKENIRKEACWTISNITAG-NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG--L-------- 401 (526)
T ss_pred ------hhhhhhhhhheeecccccC-CHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc--c--------
Confidence 7789999999999999998 8888899999999999999999999999999999999998322 1
Q ss_pred cccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-ccccc--------chhhHH
Q 002091 816 GFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERL--------QNGSKV 886 (968)
Q Consensus 816 ~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~--------~~~~~~ 886 (968)
-.++....|++.|+|+||+++|.-.+..+.+.++.++.|++ .++.+ ..+..+
T Consensus 402 -------------------~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~ 462 (526)
T COG5064 402 -------------------NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVY 462 (526)
T ss_pred -------------------CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHH
Confidence 14567888999999999999999888888888999999999 55433 235678
Q ss_pred HHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhc
Q 002091 887 LEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYG 929 (968)
Q Consensus 887 i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 929 (968)
+.++||++.|..+..+.|..+..+|..+++++|..++..+.++
T Consensus 463 vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~la 505 (526)
T COG5064 463 VEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELA 505 (526)
T ss_pred HHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcC
Confidence 8889999999999999999999999999999998887555443
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=278.21 Aligned_cols=407 Identities=22% Similarity=0.285 Sum_probs=350.0
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 500 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~ 500 (968)
..+.+...++.+.+..++..|..++.|++.+.+|+..+++.+++++|+.-......++|.++...+++|+..+++|..|.
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhh
Confidence 44666777889999999999999999999999999999999999999988887788999999999999999999999999
Q ss_pred hcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccc
Q 002091 501 EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 580 (968)
Q Consensus 501 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 580 (968)
..|++.+|.++-++.+..++.++..+|.||....+||+.++.+|++|.|++++..++ ..+++++..++.|++-...
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d---~dvqyycttaisnIaVd~~- 240 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGD---LDVQYYCTTAISNIAVDRR- 240 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCC---hhHHHHHHHHhhhhhhhHH-
Confidence 999999999998999999999999999999999999999999999999999999876 7889999999888875321
Q ss_pred ccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcC--chHHHHHhhccCChhHHHH
Q 002091 581 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCS--AIPVLVQLCEHDNENVRAN 658 (968)
Q Consensus 581 ~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~v~~~ 658 (968)
.|+.+.+.+ .++.|+.++.++++.++-.
T Consensus 241 --------------------------------------------------~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcq 270 (550)
T KOG4224|consen 241 --------------------------------------------------ARKILAQAEPKLVPALVDLMDDGSDKVKCQ 270 (550)
T ss_pred --------------------------------------------------HHHHHHhcccchHHHHHHHHhCCChHHHHH
Confidence 233344444 8999999999999999999
Q ss_pred HHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCC
Q 002091 659 AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQ 738 (968)
Q Consensus 659 a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~ 738 (968)
|..+|.+|+ .+.+...++++.|.+|.++++|+++.-+ ...+.+.++.|++-.+-+.-.+.++|++.+|+.+|+-+
T Consensus 271 A~lALrnla--sdt~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~-- 345 (550)
T KOG4224|consen 271 AGLALRNLA--SDTEYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG-- 345 (550)
T ss_pred HHHHHhhhc--ccchhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC--
Confidence 999999997 3456778889999999999999886544 55677889999998777777889999999999999985
Q ss_pred CCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 002091 739 NDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFW 818 (968)
Q Consensus 739 ~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~ 818 (968)
.+.+++-+|+.+|+||+.. .+..+..+.+.|++|.++.++.++...+|.....+++.|+.+.
T Consensus 346 ---dnEeiqchAvstLrnLAas-se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-------------- 407 (550)
T KOG4224|consen 346 ---DNEEIQCHAVSTLRNLAAS-SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-------------- 407 (550)
T ss_pred ---CchhhhhhHHHHHHHHhhh-hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc--------------
Confidence 3567999999999999997 7888999999999999999999999999999999999998533
Q ss_pred ccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHh-cCcHH-H
Q 002091 819 CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLED-ANAID-R 895 (968)
Q Consensus 819 ~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~-~~~i~-~ 895 (968)
.....+.+.|.++.|+.++.+.+.+++.+++.||.|++ +-++.....+.+-. .+|++ .
T Consensus 408 -------------------~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~ 468 (550)
T KOG4224|consen 408 -------------------NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGR 468 (550)
T ss_pred -------------------ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHH
Confidence 34567899999999999999999999999999999999 43322222222211 24444 6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 896 MVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 896 L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
|.+++.+....++..+.|.+..++...+
T Consensus 469 L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 469 LARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888999999999999876544
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.98 E-value=6.6e-31 Score=265.33 Aligned_cols=404 Identities=18% Similarity=0.220 Sum_probs=338.9
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHhcC--CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccc
Q 002091 504 VLGPLLHLVSRGDIQMKKVAVKALRNLSS--VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 581 (968)
Q Consensus 504 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~--~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 581 (968)
-+|.|.+-|-+++.+.+..|..-.+.+.+ ..+..+.++++|+||.++++|.... ..-++.+|+|+|.|++++...+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q--~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ--RDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc--hhHHHHHHHHHHhhhccCcccc
Confidence 35888888888888888888888888775 4455688999999999999996543 2457889999999999988776
Q ss_pred cCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCC--hhHHHHH
Q 002091 582 ESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN--ENVRANA 659 (968)
Q Consensus 582 ~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~v~~~a 659 (968)
.. ++...|++|.++.|+.++..++++.++|+|.|++. ++...|+.+.++|++..++.++.+.. -.+.+++
T Consensus 150 Tk------vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAG--DS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~ 221 (526)
T COG5064 150 TK------VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG--DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNA 221 (526)
T ss_pred eE------EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccC--CchhHHHHHHhcCchHHHHHHHHhccchHHHHHHh
Confidence 65 88899999999999999999999999999999985 46678899999999999999998764 4789999
Q ss_pred HHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCC
Q 002091 660 VKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQ 738 (968)
Q Consensus 660 ~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~ 738 (968)
.|.|.||+....+. -..-.-...++.|.+++.+ .+.++...|+++++.|+. ..+..+++++.|..+.|+++|.+
T Consensus 222 TWtLSNlcRGknP~-P~w~~isqalpiL~KLiys-~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~--- 296 (526)
T COG5064 222 TWTLSNLCRGKNPP-PDWSNISQALPILAKLIYS-RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH--- 296 (526)
T ss_pred HHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC---
Confidence 99999999332221 1111113578888998887 577899999999999999 88899999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 002091 739 NDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFW 818 (968)
Q Consensus 739 ~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~ 818 (968)
++..++.-++..++|+..+ ++...+.+++.|+++.+..+|.+....+|++|||++.|+.. |
T Consensus 297 ---~sa~iqtPalR~vGNIVTG-~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-------------G-- 357 (526)
T COG5064 297 ---ESAKIQTPALRSVGNIVTG-SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-------------G-- 357 (526)
T ss_pred ---ccccccCHHHHhhcCeeec-CccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc-------------C--
Confidence 5677889999999999998 67777889999999999999999888999999999999973 2
Q ss_pred ccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHH
Q 002091 819 CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMV 897 (968)
Q Consensus 819 ~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~ 897 (968)
+.++..++++++.++||+.+|...+-.++..||||+.|.. .+....+..+.+++.|.+++|.
T Consensus 358 -----------------nteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc 420 (526)
T COG5064 358 -----------------NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420 (526)
T ss_pred -----------------CHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence 5678999999999999999999999999999999999999 6656667889999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHhcChhhHH------------HhcccCCchhh-hhcccCCchhhHHHHHHHHHH
Q 002091 898 RFLSSPSPKLQEKALDSVERIFRLPEFKQ------------KYGKSAQMPLV-DLTQRGNSSMKSLSARVLAHL 958 (968)
Q Consensus 898 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~------------~~~~~~~~~Lv-~ll~~~~~~~~~~A~~aL~~L 958 (968)
++|.-.++.+.+-++.+++++++..+..+ .....+.+..+ ++-.+++..+..+|..++...
T Consensus 421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~f 494 (526)
T COG5064 421 DLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKF 494 (526)
T ss_pred HHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 99998888899999999999987765211 12222334444 445568889999998887654
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.1e-31 Score=269.10 Aligned_cols=419 Identities=19% Similarity=0.206 Sum_probs=352.5
Q ss_pred ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHH
Q 002091 392 RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRL 471 (968)
Q Consensus 392 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L 471 (968)
+...+..|-..+.+++-+.+++-.|.. -+++..|+.-+.++..++|.+++.++.||+..++||..++..|++.++.++-
T Consensus 98 d~~Iq~aa~~alGnlAVn~enk~liv~-l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLa 176 (550)
T KOG4224|consen 98 DKCIQCAAGEALGNLAVNMENKGLIVS-LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLA 176 (550)
T ss_pred chhhhhhhhhhhccceeccCCceEEEe-ccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhc
Confidence 455677888889999999999999988 4666666666667788999999999999999999999999999999999977
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcC--ChHHH
Q 002091 472 SAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG--AVGPL 549 (968)
Q Consensus 472 ~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g--~v~~L 549 (968)
+..+..+|.++..+|.+|....++|..++..|++|.||.+++++++.++..+..++.|++.+..+|+.++++| .|+.|
T Consensus 177 kskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L 256 (550)
T KOG4224|consen 177 KSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL 256 (550)
T ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChh
Q 002091 550 VDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAG 629 (968)
Q Consensus 550 v~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~ 629 (968)
++++.+++ +.++-.|.-+|+||++..+++
T Consensus 257 v~Lmd~~s---~kvkcqA~lALrnlasdt~Yq------------------------------------------------ 285 (550)
T KOG4224|consen 257 VDLMDDGS---DKVKCQAGLALRNLASDTEYQ------------------------------------------------ 285 (550)
T ss_pred HHHHhCCC---hHHHHHHHHHHhhhcccchhh------------------------------------------------
Confidence 99999877 788999999999998754332
Q ss_pred hHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhc
Q 002091 630 NIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSK 709 (968)
Q Consensus 630 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~n 709 (968)
.-+.+.|++|.++++++++........+.+++|++-.. -+...+.+.|.+.+||++|....+++++..|..+|+|
T Consensus 286 ---~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp--lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrn 360 (550)
T KOG4224|consen 286 ---REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP--LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRN 360 (550)
T ss_pred ---hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc--CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHH
Confidence 23455799999999999887777777788899997322 2334566889999999999999898999999999999
Q ss_pred CCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChH
Q 002091 710 LPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTL 788 (968)
Q Consensus 710 L~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 788 (968)
|+. ++..+..+.++|+++.+..++.+ ....+++....++..|+. ++..+..+.+.|.+|.|+.++.+.+.+
T Consensus 361 LAasse~n~~~i~esgAi~kl~eL~lD------~pvsvqseisac~a~Lal--~d~~k~~lld~gi~~iLIp~t~s~s~E 432 (550)
T KOG4224|consen 361 LAASSEHNVSVIRESGAIPKLIELLLD------GPVSVQSEISACIAQLAL--NDNDKEALLDSGIIPILIPWTGSESEE 432 (550)
T ss_pred HhhhhhhhhHHHhhcCchHHHHHHHhc------CChhHHHHHHHHHHHHHh--ccccHHHHhhcCCcceeecccCccchh
Confidence 999 99999999999999999999999 457789999999999998 688889999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhh------cCChHHHHhhccCCChh
Q 002091 789 TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLE------ANAVRPLVRVLEDPDHG 862 (968)
Q Consensus 789 v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~------~g~i~~Lv~lL~~~~~~ 862 (968)
++..|+.+|.||+.+...+.+ +++ .|.-..|++.+.+.+..
T Consensus 433 v~gNaAaAL~Nlss~v~~Yar---------------------------------viEawd~P~~gi~g~L~Rfl~S~~~t 479 (550)
T KOG4224|consen 433 VRGNAAAALINLSSDVEHYAR---------------------------------VIEAWDHPVQGIQGRLARFLASHELT 479 (550)
T ss_pred hcccHHHHHHhhhhhhHHHHH---------------------------------HHHHhcCcchhHHHHHHHHHhhhHHH
Confidence 999999999999964433221 111 13445688899998889
Q ss_pred hhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhh
Q 002091 863 ACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEF 924 (968)
Q Consensus 863 v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 924 (968)
++..+.|.+..|+ +. ..++..+..+.+ ++.+.+-.++.+..+..++
T Consensus 480 f~hia~wTI~qLle~h---------------~~~~~~~i~~~d-dii~~~~~~~~r~~~~g~~ 526 (550)
T KOG4224|consen 480 FRHIARWTIQQLLEDH---------------DLPLTAFIQSSD-DIIELLNDIVARDANNGEY 526 (550)
T ss_pred HHHHHHHHHHHHHHhC---------------CccHHHHHhCch-hHHHHHHHHHHHhccCCcc
Confidence 9999999999998 33 234445554443 4556666666666555544
No 8
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.2e-30 Score=281.70 Aligned_cols=401 Identities=20% Similarity=0.295 Sum_probs=339.0
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhcCCC--ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccccc
Q 002091 505 LGPLLHLVSRGDIQMKKVAVKALRNLSSVP--QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 582 (968)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 582 (968)
.+.++..+.++++..+..+...++.|.+.. .....++..|+||.+|+.|.... ++.++.+|+|+|.||++......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~--~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD--NPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC--ChhHHHHHHHHHHHHhcCchhhc
Confidence 577788888999988999999999998644 34566777899999999997543 38899999999999999877666
Q ss_pred CCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCCh-hHHHHHHH
Q 002091 583 SSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNE-NVRANAVK 661 (968)
Q Consensus 583 ~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~v~~~a~~ 661 (968)
. ++...|+++.++.++.+.+.++++.++|+|.|++.. +...|+.+..+|+++.|+.++...+. ...+++.|
T Consensus 146 ~------~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd--s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 146 K------VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD--SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred c------ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC--ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHH
Confidence 5 788889999999999999999999999999999864 67889999999999999999988765 78999999
Q ss_pred HHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCC
Q 002091 662 LFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQND 740 (968)
Q Consensus 662 ~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~ 740 (968)
+|.||+....+.- ..-.-..+++.|..++++ .|.++...|+++|++|+. ..+..+.+++.|+++.|+.+|.+
T Consensus 218 ~LsNlcrgk~P~P-~~~~v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~----- 290 (514)
T KOG0166|consen 218 TLSNLCRGKNPSP-PFDVVAPILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH----- 290 (514)
T ss_pred HHHHHHcCCCCCC-cHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-----
Confidence 9999994432211 111123678999999988 577899999999999998 99999999999999999999999
Q ss_pred CchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc-CChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 002091 741 PNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWC 819 (968)
Q Consensus 741 ~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~ 819 (968)
.+..++-.|+.+++|++.+ ++...+.+++.|++|.|..++.. ....++++|+|++.|++. |
T Consensus 291 -~~~~v~~PaLRaiGNIvtG-~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-------------G--- 352 (514)
T KOG0166|consen 291 -SSPKVVTPALRAIGNIVTG-SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-------------G--- 352 (514)
T ss_pred -CCcccccHHHhhccceeec-cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-------------C---
Confidence 5566788999999999998 88888999999999999999994 455699999999999983 2
Q ss_pred cCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHH
Q 002091 820 FSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVR 898 (968)
Q Consensus 820 ~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ 898 (968)
+.++..+++.+|.++.|+.+|+..+..++..|+||+.|++ .+. .+....+++.|.++++.+
T Consensus 353 ----------------~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcd 414 (514)
T KOG0166|consen 353 ----------------NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCD 414 (514)
T ss_pred ----------------CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhh
Confidence 6778999999999999999999999999999999999999 443 467889999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHhcChhhHH---------HhcccCCc-hhhhhcccCCchhhHHHHHHHHHH
Q 002091 899 FLSSPSPKLQEKALDSVERIFRLPEFKQ---------KYGKSAQM-PLVDLTQRGNSSMKSLSARVLAHL 958 (968)
Q Consensus 899 ll~~~~~~v~~~a~~~L~~l~~~~~~~~---------~~~~~~~~-~Lv~ll~~~~~~~~~~A~~aL~~L 958 (968)
+|.-.+.++...++..+++|+...+... .+...+.. .+-.+-.+.+.++.++|-+++.+-
T Consensus 415 lL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 415 LLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence 9998999999999999999987654322 22222333 344455567789999998888764
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=3.6e-23 Score=241.19 Aligned_cols=381 Identities=20% Similarity=0.258 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhc
Q 002091 394 EERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSA 473 (968)
Q Consensus 394 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~ 473 (968)
...+.+...|.+++.++.+...+.. .|.++.|+.+|.+++.+....++..|.+||...+||..|.+.|++++|++++.+
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~-~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVN-KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 3456788889999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHh
Q 002091 474 GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLL 553 (968)
Q Consensus 474 ~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL 553 (968)
++.+.+..+..+|+||+.+++.|..+++.|+||.|+.+|.++ ..+..++.+|++||.++++|..+...+++|.+++++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999754 466789999999999999999999999999999988
Q ss_pred cccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHH
Q 002091 554 LHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKT 633 (968)
Q Consensus 554 ~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~ 633 (968)
...+. +.+...+++++.||+.+.. ..+
T Consensus 421 l~~~~--~~v~~eliaL~iNLa~~~r---------------------------------------------------naq 447 (708)
T PF05804_consen 421 LENSE--EEVQLELIALLINLALNKR---------------------------------------------------NAQ 447 (708)
T ss_pred HhCCC--ccccHHHHHHHHHHhcCHH---------------------------------------------------HHH
Confidence 76542 4556667777777775332 112
Q ss_pred HHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-
Q 002091 634 TLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE- 712 (968)
Q Consensus 634 ~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~- 712 (968)
.+.+.++++.|+.......+.+ ..+.++|++ .+++.....+ .+.+..|+.++....+++....++++|+||..
T Consensus 448 lm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS-~h~~~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 448 LMCEGNGLQSLMKRALKTRDPL---LLKLIRNIS-QHDGPLKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred HHHhcCcHHHHHHHHHhcccHH---HHHHHHHHH-hcCchHHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 3444567888887665443322 346899998 4444333333 25788899999888888999999999999998
Q ss_pred CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC--ChHHH
Q 002091 713 VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG--TTLTK 790 (968)
Q Consensus 713 ~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~v~ 790 (968)
+.+..+.+.+.+.++.+.++|..+. ..+++...++..++.++. +++....+.+.|.++.|+.+|+.. |.+..
T Consensus 522 ~ld~~~ll~~~~llp~L~~~L~~g~----~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDLLKPGA----SEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHHhCCCC----CChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 6677777778899999999998764 346788889999999998 899999999999999999999964 67888
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHh-hcCChHHHHhhccCCChhhhHHHHH
Q 002091 791 EHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLL-EANAVRPLVRVLEDPDHGACEASLD 869 (968)
Q Consensus 791 ~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~-~~g~i~~Lv~lL~~~~~~v~~~al~ 869 (968)
...+++..++..+. +.+..++ +.+++..|++++++.|+.++..+-.
T Consensus 596 lQil~~f~~ll~h~---------------------------------~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~ 642 (708)
T PF05804_consen 596 LQILYVFYQLLFHE---------------------------------ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDN 642 (708)
T ss_pred HHHHHHHHHHHcCh---------------------------------HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHH
Confidence 88999999998432 3344454 4689999999999999999988888
Q ss_pred HHHhhh
Q 002091 870 ALVTLI 875 (968)
Q Consensus 870 aL~~L~ 875 (968)
+|--++
T Consensus 643 ~Ldii~ 648 (708)
T PF05804_consen 643 ALDIIA 648 (708)
T ss_pred HHHHHH
Confidence 888877
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=1.2e-21 Score=228.58 Aligned_cols=380 Identities=18% Similarity=0.268 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhc
Q 002091 435 NQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR 514 (968)
Q Consensus 435 ~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 514 (968)
......+...|.|++.+..++..|.+.|.++.|+++|.+++.++...++.+|.+|+...++|..+++.|+|+.|++++.+
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 34445788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccch
Q 002091 515 GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESD 594 (968)
Q Consensus 515 ~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~ 594 (968)
++..++..++++|+|||.+++.|..|++.|++|.|+.+|.++ ..+..++.+|.+|+..+.
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~-----~~~~val~iLy~LS~dd~--------------- 402 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP-----NFREVALKILYNLSMDDE--------------- 402 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC-----chHHHHHHHHHHhccCHh---------------
Confidence 999999999999999999999999999999999999999853 346667888888876432
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc-CChhHHHHHHHHHHHhccCCChh
Q 002091 595 KEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH-DNENVRANAVKLFCCLVDDGDEA 673 (968)
Q Consensus 595 ~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~Ls~~~~~~ 673 (968)
.+..+...++++.+++++.. +++.+...++.++.||+ ...+
T Consensus 403 ------------------------------------~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa--~~~r 444 (708)
T PF05804_consen 403 ------------------------------------ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA--LNKR 444 (708)
T ss_pred ------------------------------------hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh--cCHH
Confidence 23344556788988887654 56777888899999997 3445
Q ss_pred HHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCH-HhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHH
Q 002091 674 IIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVP-QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVG 752 (968)
Q Consensus 674 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~-~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~ 752 (968)
+.+.+.+.++++.|++..-...++ -.+.++.|++.++ .....+ .+.+..|+.++..+ .+.++.-++++
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f--~~~i~~L~~~v~~~-----~~ee~~vE~LG 513 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELF--VDFIGDLAKIVSSG-----DSEEFVVECLG 513 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHH--HHHHHHHHHHhhcC-----CcHHHHHHHHH
Confidence 667777778999999887665443 2457999999943 443333 24677778887764 35678999999
Q ss_pred HHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC--ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCccccc
Q 002091 753 ALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG--TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQV 830 (968)
Q Consensus 753 aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~ 830 (968)
+|+|++.. +.++.+.+.+.+++|.|.++|..+ .+++..+++..++.++.
T Consensus 514 iLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~---------------------------- 564 (708)
T PF05804_consen 514 ILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS---------------------------- 564 (708)
T ss_pred HHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC----------------------------
Confidence 99999987 778888888999999999999866 45788889999998873
Q ss_pred CCCccCcccchHHhhcCChHHHHhhccC--CChhhhHHHHHHHHhhh-cccccchhhH-HHHhcCcHHHHHHHhcCCChH
Q 002091 831 HGGLCGIESSFCLLEANAVRPLVRVLED--PDHGACEASLDALVTLI-EGERLQNGSK-VLEDANAIDRMVRFLSSPSPK 906 (968)
Q Consensus 831 h~~~c~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~~L~-~~~~~~~~~~-~i~~~~~i~~L~~ll~~~~~~ 906 (968)
+++....+.+.|.++.|+.+|.. .|.+++...+.++..++ .+ +.+. .+.+.+++..+++++.+.|+.
T Consensus 565 -----d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~----~tr~~ll~~~~~~~ylidL~~d~N~~ 635 (708)
T PF05804_consen 565 -----DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE----ETREVLLKETEIPAYLIDLMHDKNAE 635 (708)
T ss_pred -----CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh----HHHHHHHhccchHHHHHHHhcCCCHH
Confidence 33445667899999999999985 57788889999999999 54 3444 445688889999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 002091 907 LQEKALDSVERIFRL 921 (968)
Q Consensus 907 v~~~a~~~L~~l~~~ 921 (968)
+++.|-.+|.-+...
T Consensus 636 ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 636 IRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999998888877644
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.85 E-value=2.9e-19 Score=203.00 Aligned_cols=386 Identities=18% Similarity=0.188 Sum_probs=308.8
Q ss_pred hhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccC---Cchh
Q 002091 380 DAVESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSF---SDDN 454 (968)
Q Consensus 380 ~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~---~~~n 454 (968)
-.++..+.+|.. .+..|-+|+..|.++++ +...+..+.. .|.|+.||.+|.+...+++.+|+.+|.||.. .++|
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 345666777754 56689999999999999 7888888888 7999999999999999999999999999983 3469
Q ss_pred HHHHHhCCchHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhc--------------CCHHH
Q 002091 455 VVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR--------------GDIQM 519 (968)
Q Consensus 455 ~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--------------~~~~~ 519 (968)
|..|.+.++++.++++|+. ++.+++++.+.+|+||++.|..|..|... ++..|.+-+-. .+..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence 9999999999999999987 68999999999999999999888877654 34444443221 12567
Q ss_pred HHHHHHHHHHhcC-CCccHHHHHHc-CChHHHHHHhcc---cCCCCcchHHHHHHHHHHhhcCcc---------------
Q 002091 520 KKVAVKALRNLSS-VPQNGLQMIKE-GAVGPLVDLLLH---HSSSSSSLREETATAIMHLAVSTM--------------- 579 (968)
Q Consensus 520 ~~~a~~aL~~Ls~-~~~~~~~i~~~-g~v~~Lv~lL~~---~~~~~~~~~~~a~~~L~~La~~~~--------------- 579 (968)
-.++.++|+|+++ ..+.|++|.+. |.|+.|+..++. ...-+....++|+.+|.||+-.-+
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 7899999999997 78899999886 889999988873 111126779999999999975211
Q ss_pred --------------------------------cccCCCCccccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccC-
Q 002091 580 --------------------------------YQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRS- 625 (968)
Q Consensus 580 --------------------------------~~~~~~~~~~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~- 625 (968)
.+...+.+...++...+|...+.++. +.++.+.+.++++|-||+.+
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 00112345666777888888666665 67889999999999999865
Q ss_pred -CChhhHHHHH-hhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCC-----HH
Q 002091 626 -PSAGNIKTTL-TQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHN-----EE 698 (968)
Q Consensus 626 -~~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-----~~ 698 (968)
.....++..+ ....+.+.|+++++.+++.+...++.+|.||+.+.. .+.++..++++.|++.|..... ++
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r---nk~ligk~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR---NKELIGKYAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch---hhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence 2345566555 778899999999999999999999999999984332 3455678999999999987755 78
Q ss_pred HHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHH
Q 002091 699 EIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 777 (968)
Q Consensus 699 ~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~ 777 (968)
+...++.+|.|+.. +..+.+.+.+.++++.|+.+.++. .+....+.|...|..|-. -.+++..+...|.-..
T Consensus 628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~-----~S~k~~kaAs~vL~~lW~--y~eLh~~~kk~g~~q~ 700 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ-----HSPKEFKAASSVLDVLWQ--YKELHFKLKKKGFKQQ 700 (717)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc-----CCHHHHHHHHHHHHHHHH--HHHHhhhHhhhhhHHH
Confidence 89999999999997 999999999999999999998882 456778888888888877 4667766666665544
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=5.3e-19 Score=200.87 Aligned_cols=427 Identities=19% Similarity=0.234 Sum_probs=309.7
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccC-CchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc---CchhhH
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL---TDHHKA 497 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~-~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~---~~~~~~ 497 (968)
-+|-.+.+|.+.++.++.+|+..+..+|. +++-|..+..-|+|+.||.+|.+.+.+++.+|+++|.||.. ++++|.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 36778889999999999999999999995 55668888899999999999999999999999999999943 457899
Q ss_pred HHhhcCchHHHHHhhhc-CCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 498 SLLEGNVLGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
.|.+.++|+.++++|+. +|.++++....+|+||++++.-+..++.. ++..|.+-+-.+.... .
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw---------------~ 377 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGW---------------E 377 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhccccccc---------------C
Confidence 99999999999999986 79999999999999999987777666654 4555544332211000 0
Q ss_pred CcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhc-CchHHHHHhhcc-----
Q 002091 577 STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC-SAIPVLVQLCEH----- 650 (968)
Q Consensus 577 ~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~-g~i~~Lv~ll~~----- 650 (968)
.+... .+..++.+..++.++|.|+++ .+.+.|+.|+++ |.|..|+..+++
T Consensus 378 ~~~~~----------------------~~~~~~~vf~n~tgcLRNlSs--~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 378 EEPAP----------------------RKAEDSTVFRNVTGCLRNLSS--AGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred CCCcc----------------------cccccceeeehhhhhhccccc--hhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 00000 011235566677888888864 356777788764 558999988862
Q ss_pred -CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCC----CHHHHHHHHHHHhc-------------CC-
Q 002091 651 -DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH----NEEEIASAMGILSK-------------LP- 711 (968)
Q Consensus 651 -~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~----~~~~~~~Al~~L~n-------------L~- 711 (968)
.+....++++.+|+||+ ..-.. .+.+.....+.... ... .....++++. +.
T Consensus 434 ~~d~K~VENcvCilRNLS-Yrl~~--------Evp~~~~~~~~~~~~~~~~~~-~~~~~gcf~~k~~k~~~~~~~~~~pe 503 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLS-YRLEA--------EVPPKYRQVLANIARLPGVGP-PAESVGCFGFKKRKSDDNCDDLPIPE 503 (717)
T ss_pred cccchhHHHHHHHHhhcC-chhhh--------hcCHhhhhHhhcccccccCCC-cccccccccchhhhchhcccccCCcc
Confidence 36788999999999998 32211 01111111111100 000 0011111111 11
Q ss_pred --CCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCC---CHHHHHHH-HHcCChHHHHHHhhcC
Q 002091 712 --EVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT---NLEWQKRA-AEAGVIPKLVQLLEYG 785 (968)
Q Consensus 712 --~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~---~~~~~~~~-~~~g~i~~Lv~lL~~~ 785 (968)
..+...++++...++.....+|... .+..+.|.++++|-|++.+. ...++..+ .+..+.|.|+++|+.+
T Consensus 504 ~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s-----~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~ 578 (717)
T KOG1048|consen 504 RATAPKGSEWLWHPSVVRPYLLLLALS-----KNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND 578 (717)
T ss_pred cccCCCCceeeecHHHHHHHHHHHHHh-----cchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC
Confidence 1344455677777788877777752 45778999999999999983 33355555 7889999999999999
Q ss_pred ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCC-----
Q 002091 786 TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD----- 860 (968)
Q Consensus 786 ~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~----- 860 (968)
++.+...++.+|.|++.+- ....++..++++.|++.|.+..
T Consensus 579 ~~~vv~s~a~~LrNls~d~----------------------------------rnk~ligk~a~~~lv~~Lp~~~~~~~~ 624 (717)
T KOG1048|consen 579 DSDVVRSAAGALRNLSRDI----------------------------------RNKELIGKYAIPDLVRCLPGSGPSTSL 624 (717)
T ss_pred CchHHHHHHHHHhhhccCc----------------------------------hhhhhhhcchHHHHHHhCcCCCCCcCc
Confidence 9999999999999999432 1223455789999999998643
Q ss_pred -hhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC-CChHHHHHHHHHHHHHhcChhhHHHhcccC--Cch
Q 002091 861 -HGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS-PSPKLQEKALDSVERIFRLPEFKQKYGKSA--QMP 935 (968)
Q Consensus 861 -~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~ 935 (968)
.++..+++.+|.++. .. -.+.+.+.+.+|+++|+.+..+ .++.+-++|..++..|+...|++..+...+ ...
T Consensus 625 sedtv~~vc~tl~niv~~~---~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q~~ 701 (717)
T KOG1048|consen 625 SEDTVRAVCHTLNNIVRKN---VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQQD 701 (717)
T ss_pred hHHHHHHHHHhHHHHHHHh---HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHH
Confidence 468888999999998 32 2678899999999999999954 567999999999999999999988887765 334
Q ss_pred hhhhc
Q 002091 936 LVDLT 940 (968)
Q Consensus 936 Lv~ll 940 (968)
+...+
T Consensus 702 F~~~~ 706 (717)
T KOG1048|consen 702 FYDAL 706 (717)
T ss_pred HHhHH
Confidence 44433
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.83 E-value=3e-21 Score=160.72 Aligned_cols=72 Identities=44% Similarity=0.758 Sum_probs=62.8
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhcc
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 333 (968)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++....++||..+|+.|++|+.++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 479999999999999999999999999999999998888999999999999999999999999999998874
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.78 E-value=1.5e-17 Score=194.64 Aligned_cols=363 Identities=19% Similarity=0.213 Sum_probs=287.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcC---CHHHHHHHHHHHHHhccC-chhhHHHh
Q 002091 425 LLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG---PESVKMRMATTLAEMELT-DHHKASLL 500 (968)
Q Consensus 425 ~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~---~~~~~~~aa~~L~~L~~~-~~~~~~i~ 500 (968)
.|+.++..+|.. .-...+..++.+++.-..|+..|.++.|+++|... +.+.+..|-.+|+++..+ ++.+..=.
T Consensus 201 sllsml~t~D~e---e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RR 277 (2195)
T KOG2122|consen 201 SLLSMLGTDDEE---EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRR 277 (2195)
T ss_pred HHhhhcccCCHH---HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHH
Confidence 566666666543 44567778888888889999999999999999655 457888999999999432 22222111
Q ss_pred hcCchHH----------HHHhhhcC-------CHHHHH-HHHHHHHHhcCCCccHHHHHHcCChHHHHHHhccc------
Q 002091 501 EGNVLGP----------LLHLVSRG-------DIQMKK-VAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH------ 556 (968)
Q Consensus 501 ~~g~i~~----------Lv~lL~~~-------~~~~~~-~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~------ 556 (968)
+..++.. +..++..+ ..+-+. .|+.+|.+++.++++|..|-+.|++.++-+||.-.
T Consensus 278 E~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp 357 (2195)
T KOG2122|consen 278 EKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGP 357 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 1222222 22234332 123444 88999999999999999999999999998887531
Q ss_pred ---CCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHH
Q 002091 557 ---SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKT 633 (968)
Q Consensus 557 ---~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~ 633 (968)
+.....++.++..+|.||..++..... .+....|++..++..+.....++......+|.||++..+ ...+.
T Consensus 358 ~tnd~~~~aLRrYa~MALTNLTFGDv~NKa-----~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD-~nmKk 431 (2195)
T KOG2122|consen 358 ETNDGECNALRRYAGMALTNLTFGDVANKA-----TLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRAD-SNMKK 431 (2195)
T ss_pred CCCcHHHHHHHHHHHHHhhccccccccchh-----hhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccc-ccHHH
Confidence 111245889999999999987765433 688899999999999999988999999999999997643 34577
Q ss_pred HHhhcCchHHHHHh-hccCChhHHHHHHHHHHHhccCCChhHHHHhhcc-ccHHHHHHHhccCC---CHHHHHHHHHHHh
Q 002091 634 TLTQCSAIPVLVQL-CEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQ-KCLETLVTIIQSSH---NEEEIASAMGILS 708 (968)
Q Consensus 634 ~i~~~g~i~~Lv~l-l~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~-~~i~~Lv~lL~~~~---~~~~~~~Al~~L~ 708 (968)
++++.|-+..|+.. ++...+......+.+||||+ .+..++...+... |++..||.+|.... .-.+.+.|-++|.
T Consensus 432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS-AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLS-AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh-hcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 88999988888874 45566778888999999999 6666666666554 89999999998762 4467788889998
Q ss_pred cCCC----CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc
Q 002091 709 KLPE----VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY 784 (968)
Q Consensus 709 nL~~----~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~ 784 (968)
|.+. .++.++.+.+.+++..|+..|++ ++-.+.-++|++||||+.. +++.++.+.+.|+++.|..++++
T Consensus 511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS------~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhS 583 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKS------HSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHS 583 (2195)
T ss_pred HHHhHhhccchHHHHHHHhhHHHHHHHHhhh------cceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhh
Confidence 8755 78899999999999999999999 6778899999999999999 99999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhcccC
Q 002091 785 GTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 785 ~~~~v~~~Aa~aL~nl~~~s 804 (968)
.+..+-.-++.+|.|+..+-
T Consensus 584 KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 584 KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999998654
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=7.2e-15 Score=149.87 Aligned_cols=382 Identities=14% Similarity=0.201 Sum_probs=271.6
Q ss_pred CCCCccCHhHHHHHHHHHhhccccccc-c-------cCcccCC-----------CchHHHHHhHHHHHHHhhhcchhhHH
Q 002091 312 TSILRPNKTLRQSIEEWKDRNTMITIA-S-------MKPKLVS-----------TEVEEVLHCLEQLQDLCQQRDQHREW 372 (968)
Q Consensus 312 ~~~l~pn~~l~~~I~~w~~~~~~~~~~-~-------~~~~l~~-----------~~~~~~~~aL~~l~~~~~~~~~~r~~ 372 (968)
.+.+.|..+....|++|..++++.++- . +.++-.. ....+...-+.++-.-|+.+..+|..
T Consensus 20 ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~~~~~qp~i~~~~~~i~e~i~~~~~E~s~ll~~l~d~ck~~~A~r~l 99 (461)
T KOG4199|consen 20 EFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPVINETVDKIKEHIGQKLEETTELLEQLADECKKSLAHRVL 99 (461)
T ss_pred HHhcCccccchHHHHHHHhccCcccccccccCCCCCCCCccHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345567777788899998888764321 1 1111000 01122222344445556666555554
Q ss_pred HHhcccchhHHHHHHhhc--c--ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhh--cCCCHHHHHHHHHHH
Q 002091 373 ERLANGDDAVESIVRSLG--R--RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMA--SSDDNQASRDAQELL 445 (968)
Q Consensus 373 ~~i~~~~~~v~~lv~~L~--~--~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL--~s~~~~~~~~a~~~L 445 (968)
. .. .|+.+.++..+. . +.....+++..|..+.. .|+++.+ .+...++.+| ++++.++-......+
T Consensus 100 a--~~-~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da-----~g~~vvv~lL~~~~~~~dlt~~~~~~v 171 (461)
T KOG4199|consen 100 A--GK-NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDA-----EAMAVVLKLLALKVESEEVTLLTLQWL 171 (461)
T ss_pred h--cc-CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhcc-----ccHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3 34 777777766552 2 22356677888877765 6666544 4456677776 456777777777888
Q ss_pred Hhcc-CCchhHHHHHhCCchHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhhH----------HHhhcCchHHHHHhhh
Q 002091 446 ENLS-FSDDNVVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMELTDHHKA----------SLLEGNVLGPLLHLVS 513 (968)
Q Consensus 446 ~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~~~~~~~----------~i~~~g~i~~Lv~lL~ 513 (968)
..-+ .|+.||..+++.+.++.+...|.. |...+-....+++..|..+|+.|. .|...|+...|++.++
T Consensus 172 ~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~ 251 (461)
T KOG4199|consen 172 QKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQ 251 (461)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHH
Confidence 8777 789999999999999999977654 445566778899999988777655 4556678899999998
Q ss_pred cC-CHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCC-CcchHHHHHHHHHHhhcCcccccCCCCccccc
Q 002091 514 RG-DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSS-SSSLREETATAIMHLAVSTMYQESSQTPVTLL 591 (968)
Q Consensus 514 ~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~-~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il 591 (968)
-+ +|.+...+..+|..|+..++.++.+.+.|+++.|++++.+.+.. ...+...++..|..|++
T Consensus 252 A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG--------------- 316 (461)
T KOG4199|consen 252 AGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG--------------- 316 (461)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC---------------
Confidence 75 78999999999999999999999999999999999999875421 11133344444444443
Q ss_pred cchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhc--cCChhHHHHHHHHHHHhccC
Q 002091 592 ESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE--HDNENVRANAVKLFCCLVDD 669 (968)
Q Consensus 592 ~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~~L~~Ls~~ 669 (968)
++.++..+.+.|+.+.++.++. .+++.+...++.++..|+ -
T Consensus 317 ------------------------------------~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~-L 359 (461)
T KOG4199|consen 317 ------------------------------------SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC-L 359 (461)
T ss_pred ------------------------------------CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH-h
Confidence 3445667888899999999884 457899999999999998 5
Q ss_pred CChhHHHHhhccccHHHHHHHhccC-CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHH
Q 002091 670 GDEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVV 747 (968)
Q Consensus 670 ~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~ 747 (968)
..++.-..+++.|+....++.++.. ....++.+|++.+.|++. +.+++..++..| ++.|+..-+. .+....
T Consensus 360 R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~------~h~tce 432 (461)
T KOG4199|consen 360 RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKA------NHETCE 432 (461)
T ss_pred cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHh------cCccHH
Confidence 5666667778899999999999875 356889999999999999 888888777655 5555555555 345566
Q ss_pred HHHHHHHhhccCC
Q 002091 748 ENAVGALRRFTAP 760 (968)
Q Consensus 748 e~a~~aL~~L~~~ 760 (968)
..+-.+|..|...
T Consensus 433 ~~akaALRDLGc~ 445 (461)
T KOG4199|consen 433 AAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHhcCcc
Confidence 7777788888774
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=4.5e-15 Score=174.30 Aligned_cols=364 Identities=17% Similarity=0.171 Sum_probs=274.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC---CHHHHHHHHHHHHHhcC-CCccHHHHHH
Q 002091 467 LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG---DIQMKKVAVKALRNLSS-VPQNGLQMIK 542 (968)
Q Consensus 467 Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~Ls~-~~~~~~~i~~ 542 (968)
++.+|...+ ++..+..+..++.+++.+..+...|+++.|+++|.-. +.+.++.|-.+|.||.. .++.+..-.+
T Consensus 202 llsml~t~D---~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE 278 (2195)
T KOG2122|consen 202 LLSMLGTDD---EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRRE 278 (2195)
T ss_pred HhhhcccCC---HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHH
Confidence 444454443 4677888999999999999999999999999999753 56899999999999995 3333222222
Q ss_pred cCChHHHHH----------HhcccCC----CCcchHH-HHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhc--
Q 002091 543 EGAVGPLVD----------LLLHHSS----SSSSLRE-ETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-- 605 (968)
Q Consensus 543 ~g~v~~Lv~----------lL~~~~~----~~~~~~~-~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~-- 605 (968)
..+++.|-+ .+..... .+.+-+- .|+.+|..++.+.++|+. +..-|++..+-+|+.
T Consensus 279 ~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~a-------M~ELG~LqAIaeLl~vD 351 (2195)
T KOG2122|consen 279 KKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHA-------MNELGGLQAIAELLQVD 351 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHH-------HHHhhhHHHHHHHHHHH
Confidence 223332221 1111110 1122233 688889999998888874 555566666555543
Q ss_pred ---c----C---CHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH
Q 002091 606 ---L----T---GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII 675 (968)
Q Consensus 606 ---~----~---~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 675 (968)
. . +-.++.++..+|.||+.+..+.. ...-...|++..+|..|.+..+++....+.+|+||+...+....
T Consensus 352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NK-a~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK 430 (2195)
T KOG2122|consen 352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANK-ATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK 430 (2195)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHhhccccccccch-hhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence 1 1 22588899999999986533211 11223457899999999999899999999999999965555555
Q ss_pred HHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHH-HcCCHHHHHHHhhcCCCCCCchhHHHHHHHHH
Q 002091 676 REHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLL-DAGALPIVLNFLKNGRQNDPNRFQVVENAVGA 753 (968)
Q Consensus 676 ~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~-~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~a 753 (968)
..+.+.|.+..|+..--....+....+.+.+||||+. ..+++..|. -.|++..|+.+|.-...+ ....+.|.+-++
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs--~tLaIIEsaGGI 508 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQS--NTLAIIESAGGI 508 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCc--chhhhhhcCccH
Confidence 5556668888888876555555677899999999998 666666655 478999999999874322 346789999999
Q ss_pred HhhccCC--CCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccC
Q 002091 754 LRRFTAP--TNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVH 831 (968)
Q Consensus 754 L~~L~~~--~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h 831 (968)
|.|.+.. ..+++|+.+.+++.+..|+..|++.+..+..++|.+|+||+..
T Consensus 509 LRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR---------------------------- 560 (2195)
T KOG2122|consen 509 LRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---------------------------- 560 (2195)
T ss_pred HHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC----------------------------
Confidence 9998876 5889999999999999999999999999999999999999843
Q ss_pred CCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 832 GGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 832 ~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
+++....||+.|++..|.+|+++++..+.+.+..||.||+
T Consensus 561 ----~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 561 ----SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred ----CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 3556778999999999999999999999999999999999
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.64 E-value=1.5e-13 Score=144.60 Aligned_cols=460 Identities=15% Similarity=0.071 Sum_probs=321.4
Q ss_pred HHHHHHHHHHHhccChh----HHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhcc-CCchhHHHHHhCCchHHHHH
Q 002091 395 ERKLAVALLLELSTCNT----LRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQ 469 (968)
Q Consensus 395 ~~~~A~~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls-~~~~n~~~i~~~g~v~~Lv~ 469 (968)
....+..++...++++. +++.... +|++..|....+|+|.++.+...++|.|+| .+++||..+.+.|+-..+++
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~-a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid 136 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCID-AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID 136 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhH-HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh
Confidence 34445556666666443 3333333 688999999999999999999999999999 56789999999999888888
Q ss_pred HHhcC-------CHHHHHHHHHHHHHhc-cCchhhHHHhhcCchHHHHHhhhcC--CHHHHHHHHHHHHHhcCC-Ccc-H
Q 002091 470 RLSAG-------PESVKMRMATTLAEME-LTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSSV-PQN-G 537 (968)
Q Consensus 470 ~L~~~-------~~~~~~~aa~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~-~~~-~ 537 (968)
+|+.. +.+...-+.+.|.|-. .+++.+.++.+.|+++.|...+.-+ +....+......+||.+. .++ .
T Consensus 137 ~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~ 216 (604)
T KOG4500|consen 137 VLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLY 216 (604)
T ss_pred hhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhh
Confidence 88643 2345556667777764 4567888999999999999987543 556667777777777642 122 3
Q ss_pred HHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccC-----CHH--
Q 002091 538 LQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT-----GPN-- 610 (968)
Q Consensus 538 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~-----~~~-- 610 (968)
....+...+-.+++++.... .+++.+-+..+|+..+.++..+- .+...|.+..++.++..- ..+
T Consensus 217 ~~~~d~sl~~~l~~ll~~~v--~~d~~eM~feila~~aend~Vkl-------~la~~gl~e~~~~lv~~~k~~t~k~d~~ 287 (604)
T KOG4500|consen 217 PFCKDCSLVFMLLQLLPSMV--REDIDEMIFEILAKAAENDLVKL-------SLAQNGLLEDSIDLVRNMKDFTKKTDML 287 (604)
T ss_pred hhhccchHHHHHHHHHHHhh--ccchhhHHHHHHHHHhcCcceee-------ehhhcchHHHHHHHHHhcccccchHHHH
Confidence 34445567777888886543 26788889999999998765543 355667777777777631 111
Q ss_pred -HHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHH
Q 002091 611 -VQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVT 689 (968)
Q Consensus 611 -~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~ 689 (968)
..+.+.....-+..+ ...++........+..++..+.+++.+....+.-++.|++ ..+.....+++.+.+..|+.
T Consensus 288 ~l~k~~~el~vllltG--DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfa--R~D~~ci~~v~~~~~nkL~~ 363 (604)
T KOG4500|consen 288 NLFKRIAELDVLLLTG--DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFA--RRDDICIQLVQKDFLNKLIS 363 (604)
T ss_pred HHHHhhhhHhhhhhcC--chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhh--ccchHHHHHHHHHHHHHHHH
Confidence 112222222222211 1223333443336788888999999999999999999997 34456677889999999999
Q ss_pred HhccC----CCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHH
Q 002091 690 IIQSS----HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEW 765 (968)
Q Consensus 690 lL~~~----~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~ 765 (968)
+|... .+.+.+.+++.+|.||.-...++..+..+|+.+.++..++. ..+++.-.-.+.+.-+..+ .+..
T Consensus 364 ~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~------~~ppv~fkllgTlrM~~d~-qe~~ 436 (604)
T KOG4500|consen 364 CLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL------ASPPVTFKLLGTLRMIRDS-QEYI 436 (604)
T ss_pred HHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHh------cCCcchHHHHHHHHHHHhc-hHHH
Confidence 98653 46788999999999999977788889999999999999998 5566777778888777765 4434
Q ss_pred HHHHH-HcCChHHHHHHhhcCChH-HHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHH
Q 002091 766 QKRAA-EAGVIPKLVQLLEYGTTL-TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCL 843 (968)
Q Consensus 766 ~~~~~-~~g~i~~Lv~lL~~~~~~-v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l 843 (968)
...+. ....+..|+.+-.++|.. +--++-..+.-|..++.. .+-..++
T Consensus 437 a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~------------------------------kdv~~tv 486 (604)
T KOG4500|consen 437 ACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY------------------------------KDVILTV 486 (604)
T ss_pred HHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh------------------------------hhhHhhc
Confidence 33333 446788888888887763 777777777777654321 1223445
Q ss_pred hhcCChHHHHhhccCCChhhhHHHHHHHHhhh--cccccc------hhhHHHHhcCcHHHHHHHhcCCCh
Q 002091 844 LEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERLQ------NGSKVLEDANAIDRMVRFLSSPSP 905 (968)
Q Consensus 844 ~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~--~~~~~~------~~~~~i~~~~~i~~L~~ll~~~~~ 905 (968)
.+.|+|+.++.++.......+..|+.||..+. ...... -....+.+.|.-...-.++..++.
T Consensus 487 pksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~~I~~~s~ 556 (604)
T KOG4500|consen 487 PKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAATIIASPSY 556 (604)
T ss_pred cccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhHHhcCcHH
Confidence 67778999999999999999999999988876 111111 123344555555555555544443
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.62 E-value=2.8e-16 Score=128.22 Aligned_cols=63 Identities=48% Similarity=0.805 Sum_probs=60.2
Q ss_pred cccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHH
Q 002091 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEW 328 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w 328 (968)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++...+.||..+|+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999976 67999999999999999999999999998
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.1e-13 Score=144.95 Aligned_cols=382 Identities=18% Similarity=0.197 Sum_probs=292.4
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC
Q 002091 436 QASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG 515 (968)
Q Consensus 436 ~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~ 515 (968)
.....|+..|.|++.+-.-...|+....+..||+.|...+.+........|..|+-.+++|..+++.|.+..|+++....
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 34456888899998877777778888899999999999998888899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchh
Q 002091 516 DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDK 595 (968)
Q Consensus 516 ~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~ 595 (968)
+++.++..+..|+|++-+..++.+|+..|.+|.|+.+|.+.. -..-|+..|..++..+..+. .+...+
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~-----~~~iA~~~lYh~S~dD~~K~-------MfayTd 425 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT-----KHGIALNMLYHLSCDDDAKA-------MFAYTD 425 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc-----cchhhhhhhhhhccCcHHHH-------HHHHHH
Confidence 999999999999999999999999999999999999998643 35668888888887665443 466677
Q ss_pred HHHHHHHhh-ccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhh-ccCChhHHHHHHHHHHHhccCCChh
Q 002091 596 EIFMLFSLI-NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLC-EHDNENVRANAVKLFCCLVDDGDEA 673 (968)
Q Consensus 596 ~i~~l~~ll-~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~v~~~a~~~L~~Ls~~~~~~ 673 (968)
+|+.++..+ ...+..+-...+....|+|-...+.. .+.+..++..|.+.- +..+. + ..+.+++++ .+...
T Consensus 426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ---lvceGqgL~~LM~ra~k~~D~-l---LmK~vRniS-qHeg~ 497 (791)
T KOG1222|consen 426 CIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ---LVCEGQGLDLLMERAIKSRDL-L---LMKVVRNIS-QHEGA 497 (791)
T ss_pred HHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce---EEecCcchHHHHHHHhcccch-H---HHHHHHHhh-hccch
Confidence 888887644 45566666666666678876544432 445555666666543 33332 2 245778888 55544
Q ss_pred HHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHH
Q 002091 674 IIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVG 752 (968)
Q Consensus 674 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~ 752 (968)
....++ ..+..|...+..+.++.....++++|+||.- +.+-.+.+.+...+|.+-..|..+. ..++++-..+.
T Consensus 498 tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga----~eddLvL~~vi 571 (791)
T KOG1222|consen 498 TQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA----DEDDLVLQIVI 571 (791)
T ss_pred HHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc----cchhhhhHHHH
Confidence 444443 3677888888888788888999999999999 8888888889999999999999865 34567778888
Q ss_pred HHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC--ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCccccc
Q 002091 753 ALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG--TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQV 830 (968)
Q Consensus 753 aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~ 830 (968)
+++.++. +..+...+..+|+++.|+++|+.. +.+.........-.+..+.
T Consensus 572 ~~GT~a~--d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He-------------------------- 623 (791)
T KOG1222|consen 572 ACGTMAR--DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE-------------------------- 623 (791)
T ss_pred Hhhhhhh--hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--------------------------
Confidence 8888887 678888889999999999999953 4444444444444444211
Q ss_pred CCCccCcccchHHh-hcCChHHHHhhccCCChhhhHHHHHHHHhhh-ccc
Q 002091 831 HGGLCGIESSFCLL-EANAVRPLVRVLEDPDHGACEASLDALVTLI-EGE 878 (968)
Q Consensus 831 h~~~c~~~~~~~l~-~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~ 878 (968)
-.+..++ +...-..|+++.++.|.++|+.+=.+|--++ .+.
T Consensus 624 -------~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 624 -------LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred -------HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 1223334 3345567899999999999998888888888 443
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.59 E-value=1.5e-13 Score=144.51 Aligned_cols=384 Identities=15% Similarity=0.148 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHhccCchhhHHHh----hcCchHHHHHhhhcCCHHHHHHHHHHHHHhc-CCCccHHHHHHcCChHHHHH
Q 002091 477 SVKMRMATTLAEMELTDHHKASLL----EGNVLGPLLHLVSRGDIQMKKVAVKALRNLS-SVPQNGLQMIKEGAVGPLVD 551 (968)
Q Consensus 477 ~~~~~aa~~L~~L~~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls-~~~~~~~~i~~~g~v~~Lv~ 551 (968)
.++......+...+.++..|..+. +.+++++|.+...+++.++-....++|+|+| .+.++|..+.+.|+-..+++
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid 136 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID 136 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh
Confidence 344444555555555555555443 4678888888888899999999999999999 58899999999999999999
Q ss_pred HhcccCCCC-cchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhh
Q 002091 552 LLLHHSSSS-SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGN 630 (968)
Q Consensus 552 lL~~~~~~~-~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~ 630 (968)
+|+...... +. +......+.+.|.|..- ++++
T Consensus 137 ~L~~~cs~d~~a---------------------------------------------ne~~~~v~~g~l~Ny~l--~~~~ 169 (604)
T KOG4500|consen 137 VLKPYCSKDNPA---------------------------------------------NEEYSAVAFGVLHNYIL--DSRE 169 (604)
T ss_pred hhccccccCCcc---------------------------------------------HHHHHHHHHHHHHHhhC--CcHH
Confidence 887543210 10 11222223344444432 4667
Q ss_pred HHHHHhhcCchHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHh
Q 002091 631 IKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILS 708 (968)
Q Consensus 631 ~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~ 708 (968)
.+..+.+.|+++.|..++.-+ +....+...-...+|.+-.++.......+....-.+++++.+.-++++......+|.
T Consensus 170 l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila 249 (604)
T KOG4500|consen 170 LRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILA 249 (604)
T ss_pred HHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHH
Confidence 777788889999888877544 445555555544444421122122233345677788888887766778888899999
Q ss_pred cCCCCHHhHHHHHHcCCHHHHHHHhhc-CCCCCC-chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCC
Q 002091 709 KLPEVPQFTQWLLDAGALPIVLNFLKN-GRQNDP-NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGT 786 (968)
Q Consensus 709 nL~~~~~~~~~l~~~g~l~~Lv~lL~~-~~~~~~-~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 786 (968)
..+.++..+-.+.+.|.++.++++++. ...+.. .....-..++....-+..+ ++..+.......++..++.++.+.|
T Consensus 250 ~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG-DeSMq~L~~~p~~l~~~~sw~~S~d 328 (604)
T KOG4500|consen 250 KAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG-DESMQKLHADPQFLDFLESWFRSDD 328 (604)
T ss_pred HHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC-chHHHHHhcCcHHHHHHHHHhcCCc
Confidence 999988888899999999999999987 221111 1223334445544545554 5555555555558999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccC-----CCh
Q 002091 787 TLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLED-----PDH 861 (968)
Q Consensus 787 ~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~-----~~~ 861 (968)
....-.++-+++||+.. ..+...+++.|.+..|+++|.. +|.
T Consensus 329 ~~l~t~g~LaigNfaR~---------------------------------D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV 375 (604)
T KOG4500|consen 329 SNLITMGSLAIGNFARR---------------------------------DDICIQLVQKDFLNKLISCLMQEKDVDGNV 375 (604)
T ss_pred hhHHHHHHHHHHhhhcc---------------------------------chHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999942 2345678999999999999963 466
Q ss_pred hhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh-hHHHhcccC--Cchhhh
Q 002091 862 GACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE-FKQKYGKSA--QMPLVD 938 (968)
Q Consensus 862 ~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~--~~~Lv~ 938 (968)
.++++++.||.|+..+. .+...+...|..+.+...+....|.+..+-+..+..+....+ +..+++... ...|++
T Consensus 376 ~~qhA~lsALRnl~IPv---~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~ 452 (604)
T KOG4500|consen 376 ERQHACLSALRNLMIPV---SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD 452 (604)
T ss_pred hhHHHHHHHHHhccccC---CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence 79999999999998443 567788999999999999998889999999998888766555 444555543 334777
Q ss_pred hcccCC
Q 002091 939 LTQRGN 944 (968)
Q Consensus 939 ll~~~~ 944 (968)
...+.|
T Consensus 453 Wsks~D 458 (604)
T KOG4500|consen 453 WSKSPD 458 (604)
T ss_pred hhhCCc
Confidence 766644
No 21
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.1e-12 Score=134.12 Aligned_cols=330 Identities=15% Similarity=0.168 Sum_probs=254.0
Q ss_pred hCCchHHHHHHHh---cCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhc--CCHHHHHHHHHHHHHhcC-C
Q 002091 460 KANYFKHLLQRLS---AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR--GDIQMKKVAVKALRNLSS-V 533 (968)
Q Consensus 460 ~~g~v~~Lv~~L~---~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~-~ 533 (968)
..|..+.++-.+. +++..+-..+..+|..+.. ....+.+..++..++++|.. ++.++....+..+..-|. +
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~---~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTH---KQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhc---CCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 5666666665543 3345555566666666632 23456777888999999864 467888888888988885 7
Q ss_pred CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHH
Q 002091 534 PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQ 613 (968)
Q Consensus 534 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~ 613 (968)
+.||+-+++.++.+.+...|..... ..+..++.+++.-|...+..|-.
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk--~~~VRel~~a~r~l~~dDDiRV~------------------------------ 226 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGK--TRTVRELYDAIRALLTDDDIRVV------------------------------ 226 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCc--cHHHHHHHHHHHHhcCCCceeee------------------------------
Confidence 7899999999999999988876542 45788889999988876654321
Q ss_pred HHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhc
Q 002091 614 RILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQ 692 (968)
Q Consensus 614 ~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~ 692 (968)
++....--+.+...|++..|++.+... ++.+...++.+|..|+ -.++....+.+.|++..|+.++.
T Consensus 227 -----------fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA--Vr~E~C~~I~e~GGl~tl~~~i~ 293 (461)
T KOG4199|consen 227 -----------FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA--VRDEICKSIAESGGLDTLLRCID 293 (461)
T ss_pred -----------cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH--HHHHHHHHHHHccCHHHHHHHHh
Confidence 000111112333446788889888765 6888899999999996 34667788889999999999999
Q ss_pred cCCCHHHH---HHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091 693 SSHNEEEI---ASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 769 (968)
Q Consensus 693 ~~~~~~~~---~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~ 769 (968)
++++.+.+ ..++..|..|+.+++.+..|++.|+.+.++.++..-+ .++.+.+.++.+++-|+.. .|+....+
T Consensus 294 d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~----~~p~Vi~~~~a~i~~l~LR-~pdhsa~~ 368 (461)
T KOG4199|consen 294 DSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS----DDPLVIQEVMAIISILCLR-SPDHSAKA 368 (461)
T ss_pred hhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC----CChHHHHHHHHHHHHHHhc-CcchHHHH
Confidence 86554444 5778889999999999999999999999999987643 5678999999999999998 88988899
Q ss_pred HHcCChHHHHHHhhcC--ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcC
Q 002091 770 AEAGVIPKLVQLLEYG--TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEAN 847 (968)
Q Consensus 770 ~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g 847 (968)
++.|+-...++.|+.. ...+|+.|||.+.|+...+...+. .+=+.
T Consensus 369 ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~---------------------------------~~l~~ 415 (461)
T KOG4199|consen 369 IEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT---------------------------------ILLAN 415 (461)
T ss_pred HhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc---------------------------------hHHhc
Confidence 9999999999999854 348999999999999976644332 24456
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
+++.|+..-...++.....+-.||..|-
T Consensus 416 GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 416 GIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 8899999999888888888888999887
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=8.9e-12 Score=132.71 Aligned_cols=384 Identities=13% Similarity=0.155 Sum_probs=292.8
Q ss_pred HHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcC
Q 002091 395 ERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG 474 (968)
Q Consensus 395 ~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~ 474 (968)
..+.|+..|.+++.+...-.++.. ...+..||..|.-.+..........|..||...+||..|.+.|.++.|+++....
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrr-kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRR-KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 356788899999987666666776 6888999999987778888888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhc
Q 002091 475 PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLL 554 (968)
Q Consensus 475 ~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~ 554 (968)
.++.+......|++++.+...+..++..|.+|.|+.+|.+++ -..-|+..|+.++.++..+..+....+|+.+++.+.
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997654 345688999999999999999999999999998877
Q ss_pred ccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhh-ccCCHHHHHHHHHHHHHhccCCChhhHHH
Q 002091 555 HHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI-NLTGPNVQQRILQTFNALCRSPSAGNIKT 633 (968)
Q Consensus 555 ~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll-~~~~~~~~~~al~~L~~L~~~~~~~~~~~ 633 (968)
.+.. .++-....+.-.||+.... +++++-.+.++..|+..- +..++- ....+.+++++.... +.
T Consensus 436 ~~~~--~~vdl~lia~ciNl~lnkR-------NaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~t--qn 500 (791)
T KOG1222|consen 436 SGTG--SEVDLALIALCINLCLNKR-------NAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGAT--QN 500 (791)
T ss_pred hcCC--ceecHHHHHHHHHHHhccc-------cceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchH--HH
Confidence 6553 3444444555567776432 234666677777776543 334443 345667777653322 23
Q ss_pred HHhhcCchHHHHHhhccCC-hhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-CCHHHHHHHHHHHhcCC
Q 002091 634 TLTQCSAIPVLVQLCEHDN-ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLP 711 (968)
Q Consensus 634 ~i~~~g~i~~Lv~ll~~~~-~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~~Al~~L~nL~ 711 (968)
.+.. .+.-|...+++++ +.....+..+|.+|. -.+-+...-+-....+|.+-..|+.. ..++.+-..+-.++.++
T Consensus 501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~-v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a 577 (791)
T KOG1222|consen 501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLK-VTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA 577 (791)
T ss_pred HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcc-cCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence 3332 4666777777664 567778888999997 33333333444457788888777765 34556667777778777
Q ss_pred CCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc-CChHHHHHHhhcCChHHH
Q 002091 712 EVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA-GVIPKLVQLLEYGTTLTK 790 (968)
Q Consensus 712 ~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~v~ 790 (968)
.+......+..+|.++.++++|+... .+.++.-..+.++..+..+ +..++.+++. ..-..++.++++.+.++|
T Consensus 578 ~d~~cA~Lla~a~~i~tlieLL~a~Q----eDDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiR 651 (791)
T KOG1222|consen 578 RDLDCARLLAPAKLIDTLIELLQACQ----EDDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIR 651 (791)
T ss_pred hhhHHHHHhCccccHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHH
Confidence 78888888888999999999999843 4566777777888888874 5555666544 455569999999999999
Q ss_pred HHHHHHHhhhcccCC
Q 002091 791 EHAATSLARFSKNSL 805 (968)
Q Consensus 791 ~~Aa~aL~nl~~~s~ 805 (968)
+-+-.+|--++.++.
T Consensus 652 kVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 652 KVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHHHHHHHHhhH
Confidence 999888888876553
No 23
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8.9e-13 Score=129.26 Aligned_cols=240 Identities=20% Similarity=0.247 Sum_probs=155.4
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhh-------h-hhHHHHhhHHHHHHHHHHHHHHHHHHhcCC
Q 002091 54 VPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSK-------R-NKVYLLMNCRAIVKRLKDTAREISQALGIL 125 (968)
Q Consensus 54 ~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~~-------~-Sklyll~~~~~~~~~~~~~~~~~~~~l~~~ 125 (968)
.-.-.+|.-..-+.+--...++|-|. ++.-....++|+. . =+.|++.++......|.+.+..|.++.++.
T Consensus 31 ~~y~raI~~nP~~~~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 31 DCYSRAICINPTVASYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHhcCCCcchhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 34444554332222233467777766 6666666666653 2 245999999999999999999999999999
Q ss_pred CCCCccCchHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHhhhhhccCChhhhhHHHHHHHhhcCCCccHHHHHHHHH
Q 002091 126 PLASLDLSTDIIEEIEKVCDN-MQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFD 204 (968)
Q Consensus 126 p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~ 204 (968)
..+.+...+|+-.++..+++. +.-..-+...++.++.+.+..++..++. + + +.+.-+. | . +.. ++.
T Consensus 109 r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~-~----~-~s~~~~N-~-~-sde----~~k 175 (284)
T KOG4642|consen 109 REQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRE-R----E-LSEWQEN-G-E-SDE----HLK 175 (284)
T ss_pred hcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchh-h----H-HHHHHHc-C-C-ChH----HHh
Confidence 888888888988877766544 2111112222333444444444332111 0 1 1100010 2 1 111 221
Q ss_pred HHHHHHHhhhhhhchHHHHhHHHHHHHHhhhhcCCCchhhhhhhhhhcccCCCCCCCCCCcccccccccCCCCceecCCc
Q 002091 205 EFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSG 284 (968)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpi~~~~m~dpv~~~~g 284 (968)
.....++. .-...+..+-.++++++... .+.++|+.++|.|+.++|+|||+.|+|
T Consensus 176 ~~q~~~~~-------~~d~~~kel~elf~~v~e~r------------------k~rEvpd~lcgkIt~el~~~pvi~psg 230 (284)
T KOG4642|consen 176 TMQVPIEQ-------DHDHTTKELSELFSKVDEKR------------------KKREVPDYLCGKITLELMREPVITPSG 230 (284)
T ss_pred hhcchhHH-------HHHHHHHHHHHHHHHHHHHh------------------ccccccchhhhhhhHHhhcCCccCccc
Confidence 22222221 11123444555555543211 134588999999999999999999999
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhcc
Q 002091 285 QTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (968)
Q Consensus 285 ~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 333 (968)
.||+|..|.+++..-+.+.|+|+.+|++-.++||++++..|..|.+.|+
T Consensus 231 Ity~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 231 ITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred cchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 9999999999998877899999999999999999999999999998775
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.47 E-value=7.9e-11 Score=137.34 Aligned_cols=403 Identities=15% Similarity=0.169 Sum_probs=284.8
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCc
Q 002091 508 LLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTP 587 (968)
Q Consensus 508 Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~ 587 (968)
+...|.+.+.+....++.+|..+......... ..+..+.|...|.+++ +.++..++..|.+++..+....
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~---~~Vr~l~l~~l~~~~~~~~~~~----- 112 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPS---PKVRRLALKQLGRIARHSEGAA----- 112 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCHHHH-----
Confidence 67778777778888888888888754332222 4556788888888766 8899999999999987654432
Q ss_pred cccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 588 VTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 588 ~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
.++...+.++.++.++...+..+.+.|+.+|.+++..+.+. ..+...+.+..|..++...++.+|..+..++.+++
T Consensus 113 -~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~---~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 113 -QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL---EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA 188 (503)
T ss_pred -HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH---HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 36777889999999999999999999999999999764332 23445566899999998888899999999999998
Q ss_pred cCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHH
Q 002091 668 DDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVV 747 (968)
Q Consensus 668 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~ 747 (968)
..+++....+...|.++.++..|.+ +|.-++.+++.+|..|+..+...+.+.+.|+++.|..++.+.....+...-+.
T Consensus 189 -~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 189 -SHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred -hcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence 7778888888889999999999998 67788999999999999988999999999999999999988432211122233
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcc
Q 002091 748 ENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIG 827 (968)
Q Consensus 748 e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~ 827 (968)
-..+...++++......+... -..++..+..++.+.|+..+..|..+++.++.+.
T Consensus 267 ~g~~~f~g~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~----------------------- 321 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV----------------------- 321 (503)
T ss_pred hhHHHHHHHHHhcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-----------------------
Confidence 344566677776312222211 1345556677777889999999999999998422
Q ss_pred cccCCCccCcccchHH-hhc-CC----hHHHHhhccCCChhhhHHHHHHHHhhh-cccc-c-ch---hhHHHH---hcCc
Q 002091 828 CQVHGGLCGIESSFCL-LEA-NA----VRPLVRVLEDPDHGACEASLDALVTLI-EGER-L-QN---GSKVLE---DANA 892 (968)
Q Consensus 828 c~~h~~~c~~~~~~~l-~~~-g~----i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~-~-~~---~~~~i~---~~~~ 892 (968)
+....| ... +. +...-....+...+++.+++.||.++. .+.. . ++ ....+. ..+-
T Consensus 322 ----------~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~ 391 (503)
T PF10508_consen 322 ----------EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSP 391 (503)
T ss_pred ----------HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCc
Confidence 223333 222 23 444444555667789999999999997 3221 1 11 112211 2233
Q ss_pred HH-HHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhccc----CCchhhHHHHHHHHHHhhccc
Q 002091 893 ID-RMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQR----GNSSMKSLSARVLAHLNVLQD 963 (968)
Q Consensus 893 i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~~----~~~~~~~~A~~aL~~L~~~~~ 963 (968)
.. .+..+++.+=|+++-++..++..++..+-....+... +.+++.+-+ .+.+.++.=-.+...|...+.
T Consensus 392 ~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~--~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 392 LSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSS--PGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhC--ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 34 6778888888999999999999999887655554432 234554433 333444433444445554444
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.46 E-value=2.2e-10 Score=133.62 Aligned_cols=405 Identities=17% Similarity=0.196 Sum_probs=278.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhH-HHhhcCc
Q 002091 426 LVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKA-SLLEGNV 504 (968)
Q Consensus 426 Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~-~i~~~g~ 504 (968)
+...|++.+.+....++.+|..+-........ ..+..+.|...|.++++.+|..++..|.++..+.+... .+.+.+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 66667766676667777777776532222222 34566778888999999999999999999977665544 4556999
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCC
Q 002091 505 LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESS 584 (968)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~ 584 (968)
++.++.++.+++..+.+.|..+|.+|+.++.....+...+.+..|..++...+ ..++..+..++.+++..
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~---~~vR~Rv~el~v~i~~~------- 190 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSS---DIVRCRVYELLVEIASH------- 190 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccC---HHHHHHHHHHHHHHHhc-------
Confidence 99999999999999999999999999998888888888888888998887644 45666677777666642
Q ss_pred CCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHH
Q 002091 585 QTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 664 (968)
Q Consensus 585 ~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~ 664 (968)
+.+....+...|.++.++..++++|.-++.+++.+|.
T Consensus 191 -------------------------------------------S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 191 -------------------------------------------SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred -------------------------------------------CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 2333345556789999999999988899999999999
Q ss_pred HhccCCChhHHHHhhccccHHHHHHHhccCCCHH-----HHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCC
Q 002091 665 CLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE-----EIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQ 738 (968)
Q Consensus 665 ~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-----~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~ 738 (968)
.|+. ++.....+.+.|+++.|..++.....+. .....+...++++. ++....... ..++..+.+++.+
T Consensus 228 ~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s--- 301 (503)
T PF10508_consen 228 ELAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLES--- 301 (503)
T ss_pred HHHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCC---
Confidence 9984 6667788888999999999998764332 22344466777776 443322111 2233444455555
Q ss_pred CCCchhHHHHHHHHHHhhccCCCCHHHHHHH-HHc-CC----hHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCC
Q 002091 739 NDPNRFQVVENAVGALRRFTAPTNLEWQKRA-AEA-GV----IPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 812 (968)
Q Consensus 739 ~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~-~~~-g~----i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~ 812 (968)
.+...+..|..+++.++. +.+-...+ ... +. +..+.....++..++|..+..++.++...... +
T Consensus 302 ---~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~--~--- 371 (503)
T PF10508_consen 302 ---QDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD--R--- 371 (503)
T ss_pred ---CChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC--C---
Confidence 567789999999999997 56666666 333 23 44444444466779999999999999632211 0
Q ss_pred CCCcccccCCCCCcccccCCCccCcccchHHhhcCChH-HHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHH-h
Q 002091 813 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVR-PLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLE-D 889 (968)
Q Consensus 813 ~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~-~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~-~ 889 (968)
... ... .-.+..+.....+... .++.+++.+=+++|.+++..|..++ .+ -+.+.+. .
T Consensus 372 -~~~---------~i~------~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~----Wg~~~i~~~ 431 (503)
T PF10508_consen 372 -QDN---------DIL------SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP----WGQREICSS 431 (503)
T ss_pred -chH---------HHH------HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH----HHHHHHHhC
Confidence 000 000 0011222223334445 7778887777899999999999998 33 3334444 4
Q ss_pred cCcHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Q 002091 890 ANAIDRMVRFLSSPSPKLQEKALDSVERIFRL 921 (968)
Q Consensus 890 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 921 (968)
.|.++.+.+--...+...++.=..++..|...
T Consensus 432 ~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 432 PGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 56566665555556666777666666666533
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=8e-10 Score=131.07 Aligned_cols=499 Identities=17% Similarity=0.161 Sum_probs=311.3
Q ss_pred HHHHhhccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc-CCCHHHHHHHHHHHHhccC------CchhHH
Q 002091 384 SIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENLSF------SDDNVV 456 (968)
Q Consensus 384 ~lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~------~~~n~~ 456 (968)
.+-.+++.+.+.++.|-..+..+.+. ....+.|..++. +.|+.+|..|+-.++.+.. +.+++.
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~----------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKT----------EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQ 78 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcc----------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 34445566777888887777766553 236778888885 6899999999999988852 234455
Q ss_pred HHHhCCchHHHHHH-HhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCc
Q 002091 457 QMAKANYFKHLLQR-LSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQ 535 (968)
Q Consensus 457 ~i~~~g~v~~Lv~~-L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~ 535 (968)
.+. ..|+.. .+...+.+|..-+.++..++.++--. .-++.++.|.+..+++++..|+.|+.+|+.+...-.
T Consensus 79 sik-----s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~ 150 (1075)
T KOG2171|consen 79 SIK-----SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG 150 (1075)
T ss_pred HHH-----HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc
Confidence 442 233433 45556788999999999887654211 236788889999999999999999999999986444
Q ss_pred cHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHH----hhccCCHHH
Q 002091 536 NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFS----LINLTGPNV 611 (968)
Q Consensus 536 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~----ll~~~~~~~ 611 (968)
+...-.=....+.+.+-+.+++ ..++..|+.++...+...+.... ..-.....+|.++. .+..++.+.
T Consensus 151 ~~~~~~~~~l~~lf~q~~~d~s---~~vr~~a~rA~~a~~~~~~~~~~-----~~~~~~~llP~~l~vl~~~i~~~d~~~ 222 (1075)
T KOG2171|consen 151 NTLQPHLDDLLRLFSQTMTDPS---SPVRVAAVRALGAFAEYLENNKS-----EVDKFRDLLPSLLNVLQEVIQDGDDDA 222 (1075)
T ss_pred cccchhHHHHHHHHHHhccCCc---chHHHHHHHHHHHHHHHhccchH-----HHHHHHHHhHHHHHHhHhhhhccchHH
Confidence 4322100112333444444444 33999999999988864431110 01112233444433 344667777
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHHH-hhccccHHHHH
Q 002091 612 QQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIRE-HVGQKCLETLV 688 (968)
Q Consensus 612 ~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~-~~~~~~i~~Lv 688 (968)
-..++.+|..+... .++-++..+.+ ++..-+.+..+. ++.+|..|+..|..+++......+.. -.....++.++
T Consensus 223 a~~~l~~l~El~e~-~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l 299 (1075)
T KOG2171|consen 223 AKSALEALIELLES-EPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLL 299 (1075)
T ss_pred HHHHHHHHHHHHhh-chHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHH
Confidence 77888888888743 34444444443 566666666665 58899999999999984422111111 02223444444
Q ss_pred HHhccCCC---------------HHHHHHHHHHHhcCCC--CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHH
Q 002091 689 TIIQSSHN---------------EEEIASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 751 (968)
Q Consensus 689 ~lL~~~~~---------------~~~~~~Al~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~ 751 (968)
.++..-.+ ......|.++|-.++. .....-. -.++.+-.++.+ ++..-|..++
T Consensus 300 ~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p----~~~~~l~~~l~S------~~w~~R~AaL 369 (1075)
T KOG2171|consen 300 AMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP----PLFEALEAMLQS------TEWKERHAAL 369 (1075)
T ss_pred HhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH----HHHHHHHHHhcC------CCHHHHHHHH
Confidence 44422111 1123455556655554 2222111 124566666677 6788899999
Q ss_pred HHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccC
Q 002091 752 GALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVH 831 (968)
Q Consensus 752 ~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h 831 (968)
.+|+.++.+ ..+..... -..+++.++..|++.+|.||.+|+.+++.++.+=..
T Consensus 370 ~Als~i~EG-c~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p------------------------- 422 (1075)
T KOG2171|consen 370 LALSVIAEG-CSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP------------------------- 422 (1075)
T ss_pred HHHHHHHcc-cHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH-------------------------
Confidence 999999998 44443332 246789999999999999999999999999842210
Q ss_pred CCccCcccchHHhhcCChHHHHhhccC-CChhhhHHHHHHHHhhh-cc--cccchhhHHHHhcCcHHHHHHHhcCCChHH
Q 002091 832 GGLCGIESSFCLLEANAVRPLVRVLED-PDHGACEASLDALVTLI-EG--ERLQNGSKVLEDANAIDRMVRFLSSPSPKL 907 (968)
Q Consensus 832 ~~~c~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~~L~-~~--~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v 907 (968)
....-.+.-.++.|+..+++ .++.|+..|+.||.|++ .. ....++...+.+. .+..++.++++.+
T Consensus 423 -------~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~----~l~~L~~~~~~~v 491 (1075)
T KOG2171|consen 423 -------EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEK----KLLLLLQSSKPYV 491 (1075)
T ss_pred -------HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----HHHHHhcCCchhH
Confidence 01111233467788888886 57789999999999999 21 1122333333222 4555558889999
Q ss_pred HHHHHHHHHHHhcCh-hhHHHhcccCCchhhhhcccCC-chhhHHHHHHHHHHh
Q 002091 908 QEKALDSVERIFRLP-EFKQKYGKSAQMPLVDLTQRGN-SSMKSLSARVLAHLN 959 (968)
Q Consensus 908 ~~~a~~~L~~l~~~~-~~~~~~~~~~~~~Lv~ll~~~~-~~~~~~A~~aL~~L~ 959 (968)
++.++.+|......- +--..|-....+.|.+.+++.+ .+.|...++.+..++
T Consensus 492 ~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 492 QEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 999999998875322 1111222233456778888855 777777766655554
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.41 E-value=1.9e-11 Score=127.64 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=168.7
Q ss_pred chhHHHHHHhhc--cChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHH
Q 002091 379 DDAVESIVRSLG--RRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVV 456 (968)
Q Consensus 379 ~~~v~~lv~~L~--~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~ 456 (968)
.+.++.++..|. .++..++.|+..+.+.+..+.++..|.+ .|+++.+..++.++++.+++.|+.+|.|++.+.+|+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 567888999885 4677899999999999889999999999 8999999999999999999999999999999999988
Q ss_pred HHHhCCchHHHHHHHhcC--CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCC
Q 002091 457 QMAKANYFKHLLQRLSAG--PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP 534 (968)
Q Consensus 457 ~i~~~g~v~~Lv~~L~~~--~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 534 (968)
.|-. +++.+++.+.+. +.+++..+..+|.+|+..++++..+. +.++.|+.+|.+|+...|..++++|.|||.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 7743 577777765554 57889999999999998888877664 47999999999999999999999999999999
Q ss_pred ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcC
Q 002091 535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 577 (968)
Q Consensus 535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 577 (968)
.+...++.++++..++.++.... +.++...++....||..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~--~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSE--SKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCC--ccHHHHHHHHHHHHHHHh
Confidence 99999999999999999998754 267888999999999764
No 28
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.40 E-value=8.1e-11 Score=131.24 Aligned_cols=486 Identities=15% Similarity=0.115 Sum_probs=298.3
Q ss_pred hhcCCCHHHHHHHHHHHHhcc-CCchhHHHHHhCCchHHHHHHHhcC--CHHHHHHHHHHHHHhccCc-hhhHHHhhcCc
Q 002091 429 MASSDDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSAG--PESVKMRMATTLAEMELTD-HHKASLLEGNV 504 (968)
Q Consensus 429 lL~s~~~~~~~~a~~~L~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~~--~~~~~~~aa~~L~~L~~~~-~~~~~i~~~g~ 504 (968)
-+-+.+++....|..-..|++ .+++++..+.+.|+++.+..++... +++.+...+.++.++...+ .....+.+.+.
T Consensus 17 ~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ 96 (678)
T KOG1293|consen 17 RLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE 96 (678)
T ss_pred hhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence 344567777778888888887 6778888889999999999997654 5677766666776665444 55567888999
Q ss_pred hHHHHHhhhcCC-HHHHHHHHHHHHHhcCCCccH---HHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccc
Q 002091 505 LGPLLHLVSRGD-IQMKKVAVKALRNLSSVPQNG---LQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 580 (968)
Q Consensus 505 i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~~~~~---~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 580 (968)
++.|+.+|.+.+ ..++...+++++++....... ........+..+..++.... ......-+....++++...
T Consensus 97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l---k~~~~l~~~~~a~~s~~~~- 172 (678)
T KOG1293|consen 97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL---KYISRLDVSRAAHLSSTKD- 172 (678)
T ss_pred HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh---hhhhhhhhhhhccccccch-
Confidence 999999999888 789999999999998644222 22223334555444444121 1222222222333333221
Q ss_pred ccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH---HhccCC-Ch-hhHHHHHhhcCchH--HHHHhhccCCh
Q 002091 581 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN---ALCRSP-SA-GNIKTTLTQCSAIP--VLVQLCEHDNE 653 (968)
Q Consensus 581 ~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~---~L~~~~-~~-~~~~~~i~~~g~i~--~Lv~ll~~~~~ 653 (968)
+..++-..+....+.-++...+...+..++..+. ++...+ .+ ..........|..+ .+-++.++++.
T Consensus 173 ------hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~ 246 (678)
T KOG1293|consen 173 ------HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF 246 (678)
T ss_pred ------hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc
Confidence 2235666666666666666667788888888888 544432 22 23444455566655 56677788877
Q ss_pred hHHHHHHHHHHHhccCC-ChhHH--HH-hhccc---c-HHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcC
Q 002091 654 NVRANAVKLFCCLVDDG-DEAII--RE-HVGQK---C-LETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAG 724 (968)
Q Consensus 654 ~v~~~a~~~L~~Ls~~~-~~~~~--~~-~~~~~---~-i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g 724 (968)
..+..++.++.++.... +.+.. .. +.+.| . .-..+.++..+.- ..-..+..+...++. -..+...-.+..
T Consensus 247 s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~-s~l~~~~~l~c~~a~~~sklq~~~~e~~ 325 (678)
T KOG1293|consen 247 SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGL-STLDHTNVLFCILARFASKLQLPQHEEA 325 (678)
T ss_pred cHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCce-eehhhhhhhHHHHHHHHHhhhhHHhhhh
Confidence 77777777766664221 11100 00 11111 0 0011111111110 011122222333332 233334445566
Q ss_pred CHHHHHHHhhcCCCCCCchhHHHH---HHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 725 ALPIVLNFLKNGRQNDPNRFQVVE---NAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 725 ~l~~Lv~lL~~~~~~~~~~~~v~e---~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
.++.+.+++..+..-.......+. +-...+..++.+.....++.+.+.-....+.......|.....+|+..+.+++
T Consensus 326 ~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~s 405 (678)
T KOG1293|consen 326 TLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFS 405 (678)
T ss_pred hhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 677777777653211111111121 11222333333323445556655555555555555667788888888888887
Q ss_pred ccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccc
Q 002091 802 KNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQ 881 (968)
Q Consensus 802 ~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~ 881 (968)
.+-..|... +-...+++||+++|.+++..+...+++||+|+. -++.
T Consensus 406 rsV~aL~tg--------------------------------~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV--mefs 451 (678)
T KOG1293|consen 406 RSVSALRTG--------------------------------LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV--MEFS 451 (678)
T ss_pred HHHHHHHcC--------------------------------CccchhHHHHHHHhhCcchhHHHHHHHHHHHHH--hhcc
Confidence 432211111 234568999999999999999999999999999 2233
Q ss_pred hhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHh-cChhh-HHH-hcccCCchhhhhcccCCchhhHHHHHHHHHH
Q 002091 882 NGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF-RLPEF-KQK-YGKSAQMPLVDLTQRGNSSMKSLSARVLAHL 958 (968)
Q Consensus 882 ~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~-~~~-~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L 958 (968)
+....+...||++.+...+.+.++.++..++|+|+++. .+.+. ..+ +++-...-++.+..+.+..+++++-..|++|
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999999984 44332 222 2222345688999999999999999899887
Q ss_pred h
Q 002091 959 N 959 (968)
Q Consensus 959 ~ 959 (968)
-
T Consensus 532 ~ 532 (678)
T KOG1293|consen 532 T 532 (678)
T ss_pred h
Confidence 3
No 29
>PRK09687 putative lyase; Provisional
Probab=99.38 E-value=8.2e-11 Score=125.90 Aligned_cols=257 Identities=19% Similarity=0.174 Sum_probs=201.2
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHH
Q 002091 461 ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQM 540 (968)
Q Consensus 461 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 540 (968)
.-.++.|...|.+.+..+|..++.+|..+. ...+++.+..+++++++.+|..|+++|+.|-.....
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 345788999999999999999999997663 345678889999999999999999999998643221
Q ss_pred HHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002091 541 IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN 620 (968)
Q Consensus 541 ~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~ 620 (968)
...+++.|..++.+.. .+.++..|+.+|+++..... .....++..+...+.+.++.++..++++|.
T Consensus 88 -~~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~~-----------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 88 -QDNVFNILNNLALEDK--SACVRASAINATGHRCKKNP-----------LYSPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred -hHHHHHHHHHHHhcCC--CHHHHHHHHHHHhccccccc-----------ccchHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 2235677777744332 27899999999999864321 122345666777788889999999999996
Q ss_pred HhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHH
Q 002091 621 ALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEI 700 (968)
Q Consensus 621 ~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~ 700 (968)
.+. + ..+++.|+.++.+++..++..|+.+|..+. .++ ..+++.|+..|.. .+.+++
T Consensus 154 ~~~----~---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~~---------~~~~~~L~~~L~D-~~~~VR 209 (280)
T PRK09687 154 VIN----D---------EAAIPLLINLLKDPNGDVRNWAAFALNSNK-YDN---------PDIREAFVAMLQD-KNEEIR 209 (280)
T ss_pred ccC----C---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CCC---------HHHHHHHHHHhcC-CChHHH
Confidence 653 1 237999999999999999999999999984 222 2467889999976 577899
Q ss_pred HHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHH
Q 002091 701 ASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQ 780 (968)
Q Consensus 701 ~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~ 780 (968)
..|+..|+.+.. ..+++.|+..|.++ + ++..++.+|+++... .++|.|..
T Consensus 210 ~~A~~aLg~~~~----------~~av~~Li~~L~~~------~--~~~~a~~ALg~ig~~------------~a~p~L~~ 259 (280)
T PRK09687 210 IEAIIGLALRKD----------KRVLSVLIKELKKG------T--VGDLIIEAAGELGDK------------TLLPVLDT 259 (280)
T ss_pred HHHHHHHHccCC----------hhHHHHHHHHHcCC------c--hHHHHHHHHHhcCCH------------hHHHHHHH
Confidence 999999999764 24689999999883 2 577899999988862 46899999
Q ss_pred Hhh-cCChHHHHHHHHHHhh
Q 002091 781 LLE-YGTTLTKEHAATSLAR 799 (968)
Q Consensus 781 lL~-~~~~~v~~~Aa~aL~n 799 (968)
++. +.|+.++..|.++|..
T Consensus 260 l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHhhCCChhHHHHHHHHHhc
Confidence 997 7799999999999864
No 30
>PRK09687 putative lyase; Provisional
Probab=99.38 E-value=5.3e-11 Score=127.40 Aligned_cols=254 Identities=13% Similarity=0.121 Sum_probs=199.8
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccccc
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 582 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 582 (968)
-.++.|+.+|.+.+..++..|+.+|..+.. ..+++.+..++.+.+ +.++..++++|+.|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d---~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKN---PIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCccc--
Confidence 467899999999999999999999998742 345677888877665 88999999999998643211
Q ss_pred CCCCccccccchhHHHHHHHh-hccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHH
Q 002091 583 SSQTPVTLLESDKEIFMLFSL-INLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVK 661 (968)
Q Consensus 583 ~~~~~~~il~~~~~i~~l~~l-l~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~ 661 (968)
...+++.|..+ +++.++.++..++.+|..++....... ..++..+...+.+++..||..++.
T Consensus 88 ----------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~-------~~a~~~l~~~~~D~~~~VR~~a~~ 150 (280)
T PRK09687 88 ----------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS-------PKIVEQSQITAFDKSTNVRFAVAF 150 (280)
T ss_pred ----------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc-------hHHHHHHHHHhhCCCHHHHHHHHH
Confidence 12467777766 678899999999999999864322111 124566777788889999999999
Q ss_pred HHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCC
Q 002091 662 LFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQND 740 (968)
Q Consensus 662 ~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~ 740 (968)
+|..+. ....++.|+.+|.+ .+..++..|+.+|+.+.. ++. +++.|+.+|.+
T Consensus 151 aLg~~~------------~~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D----- 203 (280)
T PRK09687 151 ALSVIN------------DEAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQD----- 203 (280)
T ss_pred HHhccC------------CHHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcC-----
Confidence 998774 23478999999987 566899999999999954 432 46778888887
Q ss_pred CchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 002091 741 PNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCF 820 (968)
Q Consensus 741 ~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~ 820 (968)
.+..++..|+++|+++-. ..++|.|++.|.+++ ++..++.+|+++..
T Consensus 204 -~~~~VR~~A~~aLg~~~~------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~------------------ 250 (280)
T PRK09687 204 -KNEEIRIEAIIGLALRKD------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD------------------ 250 (280)
T ss_pred -CChHHHHHHHHHHHccCC------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC------------------
Confidence 678999999999998654 256899999999876 67789999999972
Q ss_pred CCCCCcccccCCCccCcccchHHhhcCChHHHHhhcc-CCChhhhHHHHHHHHh
Q 002091 821 SPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE-DPDHGACEASLDALVT 873 (968)
Q Consensus 821 ~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~~ 873 (968)
..+++.|..++. +.|+.++..+.++|..
T Consensus 251 -------------------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 -------------------------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -------------------------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 127999999997 7888999999888764
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.2e-10 Score=145.56 Aligned_cols=278 Identities=15% Similarity=0.142 Sum_probs=219.5
Q ss_pred HcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002091 542 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNA 621 (968)
Q Consensus 542 ~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~ 621 (968)
+.+.++.|+..|.+.+ +.++..|+.+|..+.. ..+++.|...+++.++.++..++.+|..
T Consensus 619 ~~~~~~~L~~~L~D~d---~~VR~~Av~~L~~~~~-----------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~ 678 (897)
T PRK13800 619 DAPSVAELAPYLADPD---PGVRRTAVAVLTETTP-----------------PGFGPALVAALGDGAAAVRRAAAEGLRE 678 (897)
T ss_pred cchhHHHHHHHhcCCC---HHHHHHHHHHHhhhcc-----------------hhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456788999998765 8999999999988642 3568889999999999999999999987
Q ss_pred hccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHH
Q 002091 622 LCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIA 701 (968)
Q Consensus 622 L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~ 701 (968)
+... ....+.|...+.++++.+|..|+.+|..+. . +....|+..|.+ .+..++.
T Consensus 679 l~~~------------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~-~------------~~~~~l~~~L~D-~d~~VR~ 732 (897)
T PRK13800 679 LVEV------------LPPAPALRDHLGSPDPVVRAAALDVLRALR-A------------GDAALFAAALGD-PDHRVRI 732 (897)
T ss_pred HHhc------------cCchHHHHHHhcCCCHHHHHHHHHHHHhhc-c------------CCHHHHHHHhcC-CCHHHHH
Confidence 7421 112456778888899999999999998874 1 123456677766 5778999
Q ss_pred HHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHH
Q 002091 702 SAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQL 781 (968)
Q Consensus 702 ~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~l 781 (968)
.|+.+|+.+.. .+.|..++.+ ++..+|..++.+|..+... +...++.|..+
T Consensus 733 ~Av~aL~~~~~-------------~~~l~~~l~D------~~~~VR~~aa~aL~~~~~~----------~~~~~~~L~~l 783 (897)
T PRK13800 733 EAVRALVSVDD-------------VESVAGAATD------ENREVRIAVAKGLATLGAG----------GAPAGDAVRAL 783 (897)
T ss_pred HHHHHHhcccC-------------cHHHHHHhcC------CCHHHHHHHHHHHHHhccc----------cchhHHHHHHH
Confidence 99999988642 2345677777 6789999999999988763 12347889999
Q ss_pred hhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCCh
Q 002091 782 LEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH 861 (968)
Q Consensus 782 L~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~ 861 (968)
+++.++.+|..|+.+|.++... ..++..|+..|.++++
T Consensus 784 l~D~d~~VR~aA~~aLg~~g~~------------------------------------------~~~~~~l~~aL~d~d~ 821 (897)
T PRK13800 784 TGDPDPLVRAAALAALAELGCP------------------------------------------PDDVAAATAALRASAW 821 (897)
T ss_pred hcCCCHHHHHHHHHHHHhcCCc------------------------------------------chhHHHHHHHhcCCCh
Confidence 9999999999999999988521 1134678899999999
Q ss_pred hhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhcc
Q 002091 862 GACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQ 941 (968)
Q Consensus 862 ~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~ 941 (968)
.||..|+.+|..+.. ...++.|..++.++++.|+..|++.|.++-.++. ....|..++.
T Consensus 822 ~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~--------a~~~L~~al~ 880 (897)
T PRK13800 822 QVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPA--------ARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH--------HHHHHHHHHh
Confidence 999999999998751 2356999999999999999999999988622222 2356789999
Q ss_pred cCCchhhHHHHHHHHH
Q 002091 942 RGNSSMKSLSARVLAH 957 (968)
Q Consensus 942 ~~~~~~~~~A~~aL~~ 957 (968)
+.++.+|+.|.++|.+
T Consensus 881 D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 881 DSDADVRAYARRALAH 896 (897)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999999975
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.33 E-value=2.4e-10 Score=142.91 Aligned_cols=278 Identities=19% Similarity=0.212 Sum_probs=219.0
Q ss_pred hCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHH
Q 002091 460 KANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQ 539 (968)
Q Consensus 460 ~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 539 (968)
....++.|+..|.+.++.+|..|+..|..+. ..++++.|+.+|+++++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 4566788999999999999999999997653 3557899999999999999999999998884311
Q ss_pred HHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHH
Q 002091 540 MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTF 619 (968)
Q Consensus 540 i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L 619 (968)
...+.|...|.+.+ +.++..++.+|..+... ....++..+.+.++.++..++++|
T Consensus 684 ----~~~~~L~~~L~~~d---~~VR~~A~~aL~~~~~~------------------~~~~l~~~L~D~d~~VR~~Av~aL 738 (897)
T PRK13800 684 ----PPAPALRDHLGSPD---PVVRAAALDVLRALRAG------------------DAALFAAALGDPDHRVRIEAVRAL 738 (897)
T ss_pred ----CchHHHHHHhcCCC---HHHHHHHHHHHHhhccC------------------CHHHHHHHhcCCCHHHHHHHHHHH
Confidence 12356777887644 78999999999886421 124567788999999999999998
Q ss_pred HHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHH
Q 002091 620 NALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEE 699 (968)
Q Consensus 620 ~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 699 (968)
..+- ..+.|..++.+++..+|..++.+|..+. .. ....++.|..++++ .+..+
T Consensus 739 ~~~~----------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~-~~---------~~~~~~~L~~ll~D-~d~~V 791 (897)
T PRK13800 739 VSVD----------------DVESVAGAATDENREVRIAVAKGLATLG-AG---------GAPAGDAVRALTGD-PDPLV 791 (897)
T ss_pred hccc----------------CcHHHHHHhcCCCHHHHHHHHHHHHHhc-cc---------cchhHHHHHHHhcC-CCHHH
Confidence 7651 2345778899999999999999999986 21 12346788888877 46889
Q ss_pred HHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHH
Q 002091 700 IASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLV 779 (968)
Q Consensus 700 ~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv 779 (968)
+..|+..|+++...+. ....++..|.+ .+..+|..|+.+|..+.. ...++.|+
T Consensus 792 R~aA~~aLg~~g~~~~---------~~~~l~~aL~d------~d~~VR~~Aa~aL~~l~~------------~~a~~~L~ 844 (897)
T PRK13800 792 RAAALAALAELGCPPD---------DVAAATAALRA------SAWQVRQGAARALAGAAA------------DVAVPALV 844 (897)
T ss_pred HHHHHHHHHhcCCcch---------hHHHHHHHhcC------CChHHHHHHHHHHHhccc------------cchHHHHH
Confidence 9999999999875321 22457778877 568899999999998764 23469999
Q ss_pred HHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCC
Q 002091 780 QLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDP 859 (968)
Q Consensus 780 ~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~ 859 (968)
.+|.+.++.||..|+++|..+.. ...+.+.|...|.+.
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~------------------------------------------~~~a~~~L~~al~D~ 882 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPG------------------------------------------DPAARDALTTALTDS 882 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCC------------------------------------------CHHHHHHHHHHHhCC
Confidence 99999999999999999998731 112578888999999
Q ss_pred ChhhhHHHHHHHHh
Q 002091 860 DHGACEASLDALVT 873 (968)
Q Consensus 860 ~~~v~~~al~aL~~ 873 (968)
|..|+..|..||..
T Consensus 883 d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 883 DADVRAYARRALAH 896 (897)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999864
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.31 E-value=8e-11 Score=122.97 Aligned_cols=196 Identities=17% Similarity=0.250 Sum_probs=160.6
Q ss_pred HhCCchHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccH
Q 002091 459 AKANYFKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNG 537 (968)
Q Consensus 459 ~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~ 537 (968)
.+++.++.|+.+|+.. ++.+++.+..++.+.+..+.++..|.+.|+++.+..+|.++++.++..|+.+|.|++.+.+|+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 4667789999999865 799999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHH
Q 002091 538 LQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQ 617 (968)
Q Consensus 538 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~ 617 (968)
..+-. .++.+++.+.+...+ ..++..++.+|.||+..+..+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~ln-s~~Q~agLrlL~nLtv~~~~~------------------------------------ 129 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLN-SEVQLAGLRLLTNLTVTNDYH------------------------------------ 129 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCC-CHHHHHHHHHHHccCCCcchh------------------------------------
Confidence 87644 477777765554322 466777777777776433221
Q ss_pred HHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCH
Q 002091 618 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNE 697 (968)
Q Consensus 618 ~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 697 (968)
..+. +.++.++.++..++..++..++++|.||+ ..+.....++..++...++.+++...+.
T Consensus 130 ---------------~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS--~np~~~~~Ll~~q~~~~~~~Lf~~~~~~ 190 (254)
T PF04826_consen 130 ---------------HMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS--ENPDMTRELLSAQVLSSFLSLFNSSESK 190 (254)
T ss_pred ---------------hhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc--cCHHHHHHHHhccchhHHHHHHccCCcc
Confidence 1222 36888999999999999999999999997 3455677788889999999999998777
Q ss_pred HHHHHHHHHHhcCCC
Q 002091 698 EEIASAMGILSKLPE 712 (968)
Q Consensus 698 ~~~~~Al~~L~nL~~ 712 (968)
++...++.++.||..
T Consensus 191 ~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 191 ENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888899999988865
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.29 E-value=5.1e-10 Score=133.71 Aligned_cols=434 Identities=16% Similarity=0.182 Sum_probs=300.1
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 500 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~ 500 (968)
-+.+..+.++.+.+...+.-+-.++..+...++....+ .+..+.+-|.++++..+..|..+|.++...+-.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~----- 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMA----- 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHH-----
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchh-----
Confidence 45677888888999999888888888777655553333 356677778899999999999999998732222
Q ss_pred hcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHh-hcCc
Q 002091 501 EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL-AVST 578 (968)
Q Consensus 501 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L-a~~~ 578 (968)
...++.+.+++.++++.+|+.|+.++.++.. +++. ++.+.++.+..+|.+.+ +.++..|+.++..+ ....
T Consensus 113 -~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d~~---~~V~~~a~~~l~~i~~~~~ 184 (526)
T PF01602_consen 113 -EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSDKD---PSVVSAALSLLSEIKCNDD 184 (526)
T ss_dssp -HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTHSS---HHHHHHHHHHHHHHHCTHH
T ss_pred -hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccCCc---chhHHHHHHHHHHHccCcc
Confidence 2257888999999999999999999999984 3332 22225888999997765 88999999999998 2111
Q ss_pred ccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHH
Q 002091 579 MYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRAN 658 (968)
Q Consensus 579 ~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~ 658 (968)
.. .-.....+..+..++...+|..+..++++|..++....... . . ...++.+..++.+.++.+...
T Consensus 185 ~~---------~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~-~-~---~~~i~~l~~~l~s~~~~V~~e 250 (526)
T PF01602_consen 185 SY---------KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA-D-K---NRIIEPLLNLLQSSSPSVVYE 250 (526)
T ss_dssp HH---------TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH-H-H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hh---------hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh-h-H---HHHHHHHHHHhhccccHHHHH
Confidence 00 01113345555666678999999999999998875422111 0 0 246888888998889999999
Q ss_pred HHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhh-cC
Q 002091 659 AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK-NG 736 (968)
Q Consensus 659 a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~-~~ 736 (968)
++.++..+. . ... .-..+++.|+.++.+ ++..++..++..|..++. .+... . .....+..+. +
T Consensus 251 ~~~~i~~l~-~-~~~-----~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~- 315 (526)
T PF01602_consen 251 AIRLIIKLS-P-SPE-----LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYD- 315 (526)
T ss_dssp HHHHHHHHS-S-SHH-----HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCS-
T ss_pred HHHHHHHhh-c-chH-----HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCC-
Confidence 999999986 2 222 234678899999985 677899999999999998 62221 1 3333445555 4
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhh-cCChHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 002091 737 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE-YGTTLTKEHAATSLARFSKNSLGLSRPIPKRK 815 (968)
Q Consensus 737 ~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~ 815 (968)
.+..++..++.+|.+++. +..... +++.|...+. .+++.++..++.+++.++...+.
T Consensus 316 -----~d~~Ir~~~l~lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~--------- 373 (526)
T PF01602_consen 316 -----DDPSIRKKALDLLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP--------- 373 (526)
T ss_dssp -----SSHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---------
T ss_pred -----CChhHHHHHHHHHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---------
Confidence 568899999999999995 444444 4777888884 44888999999999999843211
Q ss_pred cccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHH
Q 002091 816 GFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAID 894 (968)
Q Consensus 816 ~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~ 894 (968)
...-.++.+++++...+..+...+...+.++. ... +. ....++
T Consensus 374 ----------------------------~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~---~~-----~~~~l~ 417 (526)
T PF01602_consen 374 ----------------------------DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP---EL-----REKILK 417 (526)
T ss_dssp ----------------------------SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST---TT-----HHHHHH
T ss_pred ----------------------------hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh---hh-----hHHHHH
Confidence 11236888999999887888888888888888 321 11 122377
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHh
Q 002091 895 RMVRFLS-SPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 895 ~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~ 959 (968)
.+.+.+. -.++.++..++|+++.+....+... ........+++.+...++.+|...-.++..+.
T Consensus 418 ~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~ 482 (526)
T PF01602_consen 418 KLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLF 482 (526)
T ss_dssp HHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 7788885 4778899999999988753222100 01111233455555555666666655555543
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.27 E-value=2.2e-08 Score=119.82 Aligned_cols=360 Identities=14% Similarity=0.115 Sum_probs=236.5
Q ss_pred HHHHHhhcc-ChHHHHHHHHHHH-HhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHh
Q 002091 383 ESIVRSLGR-RIEERKLAVALLL-ELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAK 460 (968)
Q Consensus 383 ~~lv~~L~~-~~~~~~~A~~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~ 460 (968)
..+-+.|.+ +...+..|++.+. .++.+.+. ....+..+.++.++|...+.-....|.+.+...+....+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-- 105 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-- 105 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH--
Confidence 334444433 3345556665433 33333222 234555677788999999998888888887544443333
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHH
Q 002091 461 ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQM 540 (968)
Q Consensus 461 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 540 (968)
.+..+.+-+.+.++.+|..|+.+|.++-..+-. .-.++++.+.+.+.+|.+|+.|+-++.++..... ..+
T Consensus 106 --aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~------e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv 175 (746)
T PTZ00429 106 --AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVL------EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLF 175 (746)
T ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccc
Confidence 245677778888999999999999887432211 1245677788889999999999999999964222 334
Q ss_pred HHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002091 541 IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN 620 (968)
Q Consensus 541 ~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~ 620 (968)
.+.|.++.|.++|.+.+ +.++.+|+.+|..+....... +-.....+..++..+...++..|..++.+|.
T Consensus 176 ~~~~~~~~L~~LL~D~d---p~Vv~nAl~aL~eI~~~~~~~--------l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~ 244 (746)
T PTZ00429 176 YQQDFKKDLVELLNDNN---PVVASNAAAIVCEVNDYGSEK--------IESSNEWVNRLVYHLPECNEWGQLYILELLA 244 (746)
T ss_pred cccchHHHHHHHhcCCC---ccHHHHHHHHHHHHHHhCchh--------hHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 45688899999988765 889999999999997543211 1123445666777777788999999999886
Q ss_pred HhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHH
Q 002091 621 ALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEI 700 (968)
Q Consensus 621 ~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~ 700 (968)
..... +..+. ...+..+...+++.++.|...|++++.++.....+...... -......|+.++. ++.+++
T Consensus 245 ~y~P~-~~~e~------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~s--s~~eiq 314 (746)
T PTZ00429 245 AQRPS-DKESA------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLSR--RDAETQ 314 (746)
T ss_pred hcCCC-CcHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhhC--CCccHH
Confidence 64321 11121 23577778888899999999999999999733222222222 1223356666643 355788
Q ss_pred HHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHH
Q 002091 701 ASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLV 779 (968)
Q Consensus 701 ~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv 779 (968)
..+++.|.-+.. .+.. .... +..+.-...+ ...++...+.+|..++.. .....+ +..|.
T Consensus 315 yvaLr~I~~i~~~~P~l----f~~~-~~~Ff~~~~D-------p~yIK~~KLeIL~~Lane---~Nv~~I-----L~EL~ 374 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNL----LRTN-LDSFYVRYSD-------PPFVKLEKLRLLLKLVTP---SVAPEI-----LKELA 374 (746)
T ss_pred HHHHHHHHHHHHHCHHH----HHHH-HHhhhcccCC-------cHHHHHHHHHHHHHHcCc---ccHHHH-----HHHHH
Confidence 888887766665 4322 1111 2222222222 345899999999999863 333333 35566
Q ss_pred HHhhcCChHHHHHHHHHHhhhcc
Q 002091 780 QLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 780 ~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
....+.+.+.++.+..++++++.
T Consensus 375 eYa~d~D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 375 EYASGVDMVFVVEVVRAIASLAI 397 (746)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHH
Confidence 77777788999999999999984
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.27 E-value=1.7e-09 Score=129.13 Aligned_cols=472 Identities=16% Similarity=0.165 Sum_probs=311.2
Q ss_pred hhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHH
Q 002091 380 DAVESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQ 457 (968)
Q Consensus 380 ~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~ 457 (968)
.+...+++.+++ +...++-+--.+..+.. +++.... ++..+.+-|.++++.++..|+.+|.++...+- ..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l------~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~-~~- 113 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL------IINSLQKDLNSPNPYIRGLALRTLSNIRTPEM-AE- 113 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH------HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHH-HH-
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH------HHHHHHHhhcCCCHHHHHHHHhhhhhhcccch-hh-
Confidence 345556666654 44555555555555555 4442222 34567777889999999999999999862211 11
Q ss_pred HHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHh-cCCCcc
Q 002091 458 MAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNL-SSVPQN 536 (968)
Q Consensus 458 i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L-s~~~~~ 536 (968)
..++.+.+.|.++++.+|..|+.++..+...+.. .+... .++.+.++|.+.++.++..|+.++..+ ...+..
T Consensus 114 ----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~ 186 (526)
T PF01602_consen 114 ----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSY 186 (526)
T ss_dssp ----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHH
T ss_pred ----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchh
Confidence 2367788889999999999999999998533211 11122 689999999999999999999999999 211111
Q ss_pred HHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHH
Q 002091 537 GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRIL 616 (968)
Q Consensus 537 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al 616 (968)
. .+ -...+..|.+++...+ +-++..++.+|..++....... .....+..+..++.+.++.+.-.++
T Consensus 187 ~-~~-~~~~~~~L~~~l~~~~---~~~q~~il~~l~~~~~~~~~~~---------~~~~~i~~l~~~l~s~~~~V~~e~~ 252 (526)
T PF01602_consen 187 K-SL-IPKLIRILCQLLSDPD---PWLQIKILRLLRRYAPMEPEDA---------DKNRIIEPLLNLLQSSSPSVVYEAI 252 (526)
T ss_dssp T-TH-HHHHHHHHHHHHTCCS---HHHHHHHHHHHTTSTSSSHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hh-HHHHHHHhhhcccccc---hHHHHHHHHHHHhcccCChhhh---------hHHHHHHHHHHHhhccccHHHHHHH
Confidence 1 11 1123334444443333 6678888888887765332111 0035788888888888999999999
Q ss_pred HHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCC
Q 002091 617 QTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHN 696 (968)
Q Consensus 617 ~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 696 (968)
+++..+... .. +. ..+++.|..++.+++++++..++..|..++... .. . +. .....+..+...++
T Consensus 253 ~~i~~l~~~--~~-----~~-~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~---~-v~--~~~~~~~~l~~~~d 317 (526)
T PF01602_consen 253 RLIIKLSPS--PE-----LL-QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PP---A-VF--NQSLILFFLLYDDD 317 (526)
T ss_dssp HHHHHHSSS--HH-----HH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HH---H-HG--THHHHHHHHHCSSS
T ss_pred HHHHHhhcc--hH-----HH-HhhHHHHHHHhhcccchhehhHHHHHHHhhccc-ch---h-hh--hhhhhhheecCCCC
Confidence 999988643 11 11 247889999999999999999999999998332 11 1 12 23334456665578
Q ss_pred HHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChH
Q 002091 697 EEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIP 776 (968)
Q Consensus 697 ~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~ 776 (968)
..++..++.+|.+++....... +++.|...+.+. .+.+++..++..++.++.. .+...+ -.++
T Consensus 318 ~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~-----~d~~~~~~~i~~I~~la~~-~~~~~~-----~~v~ 380 (526)
T PF01602_consen 318 PSIRKKALDLLYKLANESNVKE------ILDELLKYLSEL-----SDPDFRRELIKAIGDLAEK-FPPDAE-----WYVD 380 (526)
T ss_dssp HHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC-------HHHHHHHHHHHHHHHHH-HGSSHH-----HHHH
T ss_pred hhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhc-----cchhhhhhHHHHHHHHHhc-cCchHH-----HHHH
Confidence 8999999999999997333322 467777888441 3567999999999998864 111111 2367
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhc
Q 002091 777 KLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 856 (968)
Q Consensus 777 ~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL 856 (968)
.+++++..++..+...+...+.++....+. ....++..|++.+
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~-------------------------------------~~~~~l~~L~~~l 423 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPE-------------------------------------LREKILKKLIELL 423 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTT-------------------------------------THHHHHHHHHHHH
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChh-------------------------------------hhHHHHHHHHHHH
Confidence 899999988788888888888888754432 1223588888888
Q ss_pred cC-CChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh---hhHHHhccc
Q 002091 857 ED-PDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP---EFKQKYGKS 931 (968)
Q Consensus 857 ~~-~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~ 931 (968)
.+ .++.++..++|.++... ...... .. ...++.+.+.....++.++...+.++.+++... +... .
T Consensus 424 ~~~~~~~~~~~~~wilGEy~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~----~ 493 (526)
T PF01602_consen 424 EDISSPEALAAAIWILGEYGELIENTE-SA-----PDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN----E 493 (526)
T ss_dssp TSSSSHHHHHHHHHHHHHHCHHHTTTT-HH-----HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH----H
T ss_pred HHhhHHHHHHHHHhhhcccCCcccccc-cH-----HHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH----H
Confidence 86 67778899999999987 211100 01 112344444455667889999999999987322 1211 1
Q ss_pred CCchhhhhcc--cCCchhhHHHHHHHHHHh
Q 002091 932 AQMPLVDLTQ--RGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 932 ~~~~Lv~ll~--~~~~~~~~~A~~aL~~L~ 959 (968)
....+..+.. +.+.++|++|.-.++-|+
T Consensus 494 i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 494 ILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 1234566666 779999999988877665
No 37
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3.3e-08 Score=117.65 Aligned_cols=466 Identities=19% Similarity=0.189 Sum_probs=281.8
Q ss_pred hhHHHHHHhhc--cChHHHHHHHHHHHHhcc------ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCC
Q 002091 380 DAVESIVRSLG--RRIEERKLAVALLLELST------CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFS 451 (968)
Q Consensus 380 ~~v~~lv~~L~--~~~~~~~~A~~~L~~Ls~------~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~ 451 (968)
...+.|...+. .+++.+.-|+..++.+.. +.+.+..|.. ..|-.+.+...+.++..-+.++..++.+
T Consensus 36 ~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks-----~lL~~~~~E~~~~vr~k~~dviAeia~~ 110 (1075)
T KOG2171|consen 36 PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS-----SLLEIIQSETEPSVRHKLADVIAEIARN 110 (1075)
T ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 35556666663 356667777777776532 3455666554 2333344556778888888888877643
Q ss_pred chhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHH----HHHhhhcCCHHHHHHHHHHH
Q 002091 452 DDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGP----LLHLVSRGDIQMKKVAVKAL 527 (968)
Q Consensus 452 ~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~----Lv~lL~~~~~~~~~~a~~aL 527 (968)
.-.- .-.+.++.|.+..+++++..|+.|..+|+++...-.+.. .+.++. +.+-+.+++..+|..|++++
T Consensus 111 ~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~ 183 (1075)
T KOG2171|consen 111 DLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQTMTDPSSPVRVAAVRAL 183 (1075)
T ss_pred cccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 2111 123456777777888999999999999999853221111 223334 44445555555999999999
Q ss_pred HHhcCCC-ccHHHHHHc-CChHHHHHHhcccCC-CCcchHHHHHHHHHHhhcCcccccCCCCcccccc--chhHHHHHHH
Q 002091 528 RNLSSVP-QNGLQMIKE-GAVGPLVDLLLHHSS-SSSSLREETATAIMHLAVSTMYQESSQTPVTLLE--SDKEIFMLFS 602 (968)
Q Consensus 528 ~~Ls~~~-~~~~~i~~~-g~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~--~~~~i~~l~~ 602 (968)
...+... .++...-.. ..+|.++..+..... +.......++.+|..++..... ++. -...+..-+.
T Consensus 184 ~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk---------~l~~~l~~ii~~~l~ 254 (1075)
T KOG2171|consen 184 GAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK---------LLRPHLSQIIQFSLE 254 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH---------HHHHHHHHHHHHHHH
Confidence 9998544 344333332 357777776654211 1244567778888887764321 111 0122333334
Q ss_pred hhc--cCCHHHHHHHHHHHHHhccCCChhhHHHHHhh--cCchHHHHHhhccCC----------------hhHHHHHHHH
Q 002091 603 LIN--LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQ--CSAIPVLVQLCEHDN----------------ENVRANAVKL 662 (968)
Q Consensus 603 ll~--~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~--~g~i~~Lv~ll~~~~----------------~~v~~~a~~~ 662 (968)
+.+ .-+..+|..|+.++..++.. .....| .-.. ...++.++.++.... +.-...|..+
T Consensus 255 Ia~n~~l~~~~R~~ALe~ivs~~e~-Ap~~~k-~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~ 332 (1075)
T KOG2171|consen 255 IAKNKELENSIRHLALEFLVSLSEY-APAMCK-KLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQA 332 (1075)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHh-hHHHhh-hchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHH
Confidence 443 33678999999999988765 111111 1111 123455555553211 1235556667
Q ss_pred HHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCC
Q 002091 663 FCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDP 741 (968)
Q Consensus 663 L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~ 741 (968)
|-.++..-.++. +-.-.++.+-.+|.+ .+...+.+++.+|+.++. ..+.....+ ..+++.++..|++
T Consensus 333 lDrlA~~L~g~~----v~p~~~~~l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~D------ 400 (1075)
T KOG2171|consen 333 LDRLALHLGGKQ----VLPPLFEALEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLND------ 400 (1075)
T ss_pred HHHHHhcCChhh----ehHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCC------
Confidence 777763222221 112234455556666 567889999999999998 554444322 4567888888888
Q ss_pred chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC-ChHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG-TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCF 820 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~ 820 (968)
+++.||..|+.+++.++..-.++.++.. ..-++|.|+..+.+. +++++..|+.+|-|++...++
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-------------- 465 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-------------- 465 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH--------------
Confidence 7899999999999999987556665544 456778899988865 779999999999999864432
Q ss_pred CCCCCcccccCCCccCcccchHHhhcCChHHHHh-hccCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCcHHHHH
Q 002091 821 SPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVR-VLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMV 897 (968)
Q Consensus 821 ~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~L~ 897 (968)
....=.=.+.+++++. ++.++.+.+++.+..||...+ ..+.+.++... .++.|.
T Consensus 466 ------------------~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~-----~Mp~L~ 522 (1075)
T KOG2171|consen 466 ------------------SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR-----LMPLLK 522 (1075)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH-----HHHHHH
Confidence 0000011134453333 445678889999999999999 33333334333 367788
Q ss_pred HHhcCCC-hHHHHHHHHHHHHH
Q 002091 898 RFLSSPS-PKLQEKALDSVERI 918 (968)
Q Consensus 898 ~ll~~~~-~~v~~~a~~~L~~l 918 (968)
.++...+ .+.+...-.+++++
T Consensus 523 ~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 523 NFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred HHHhCCCchhhHHHHhhHHHHH
Confidence 8885443 44554444444444
No 38
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.24 E-value=3.6e-09 Score=118.34 Aligned_cols=480 Identities=14% Similarity=0.108 Sum_probs=285.9
Q ss_pred CchHHHHHhHHHHHHHhhhcchhhHHHHhcccchhHHHHHHhhcc---ChHHHHHHHHHHHHhcc-ChhHHHHhhhccCh
Q 002091 347 TEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGR---RIEERKLAVALLLELST-CNTLRDQIGDVQGC 422 (968)
Q Consensus 347 ~~~~~~~~aL~~l~~~~~~~~~~r~~~~i~~~~~~v~~lv~~L~~---~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~ 422 (968)
.+++..+.++.....|.-.++.++..+ -. .|+++.+...++. .++.+...+..+..+.. .......+.+ .+.
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~~K~~~--ik-~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~-~~~ 96 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTDNKETN--IK-LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR-IIE 96 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCCccchh--hh-hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH-Hhh
Confidence 344555666777777776665554421 23 7889998888754 23455566666666655 5566667777 688
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHhccCCchh---HHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHH
Q 002091 423 ILLLVTMASSDD-NQASRDAQELLENLSFSDDN---VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKAS 498 (968)
Q Consensus 423 i~~Lv~lL~s~~-~~~~~~a~~~L~~Ls~~~~n---~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~ 498 (968)
++.|..+++..| ..+.+...+.+.++-...+. .........+..+..++..........-+...++++...+.+..
T Consensus 97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~I 176 (678)
T KOG1293|consen 97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLI 176 (678)
T ss_pred HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhhe
Confidence 999999999888 78888899999988543322 22222233344444444424444444555566667777777777
Q ss_pred HhhcCchHHHHHhhhcCCHHHHHHHHHHHH---HhcCC-CccHH----HHHHcCChH--HHHHHhcccCCCCcchHHHHH
Q 002091 499 LLEGNVLGPLLHLVSRGDIQMKKVAVKALR---NLSSV-PQNGL----QMIKEGAVG--PLVDLLLHHSSSSSSLREETA 568 (968)
Q Consensus 499 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~---~Ls~~-~~~~~----~i~~~g~v~--~Lv~lL~~~~~~~~~~~~~a~ 568 (968)
..+.|+.+.+.-++...+...|.+|+..+. ++..+ +.... ...+.|..+ .+.+++.++. ...+..++
T Consensus 177 l~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~---~s~~l~sl 253 (678)
T KOG1293|consen 177 LCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPD---FSERLRSL 253 (678)
T ss_pred eccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCC---ccHHHHHH
Confidence 778888888888887778899999999999 66643 33332 233445555 4556666655 55667777
Q ss_pred HHHHHhhcCcccccCCCCccccccchh--HHH--HHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHH
Q 002091 569 TAIMHLAVSTMYQESSQTPVTLLESDK--EIF--MLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVL 644 (968)
Q Consensus 569 ~~L~~La~~~~~~~~~~~~~~il~~~~--~i~--~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~L 644 (968)
.+|.++...+.....-+ ...+....| .+. ..+.++..+......+.+...+-+++. ....+....+...++.+
T Consensus 254 ~cl~~~~~~s~~~d~l~-~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~--~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 254 ECLVPYLRKSFNYDPLP-WWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARF--ASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHhccccccccc-cceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHH--HHhhhhHHhhhhhhhhH
Confidence 77777765442222100 000111111 111 111222211111111111111111110 11222223333455556
Q ss_pred HHhhcc------CChhHHHHHHH---HHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CH
Q 002091 645 VQLCEH------DNENVRANAVK---LFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VP 714 (968)
Q Consensus 645 v~ll~~------~~~~v~~~a~~---~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~ 714 (968)
.+++.. +.++.+.-++. .+..+.....-..+.++.+..... ....+....+.+...+|+-++.+++. -.
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~-~l~~~~~~kd~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTES-HLMCLPPIKDHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHH-HHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 665542 22322222222 111111000111112222111111 11122222566777888888888776 33
Q ss_pred HhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHH
Q 002091 715 QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAA 794 (968)
Q Consensus 715 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa 794 (968)
..+.-+-...+..+++.++.. ++..+...+.++|+|+.-. -...+..+...|+|..+..++.+.++.++..+.
T Consensus 410 aL~tg~~~~dv~~plvqll~d------p~~~i~~~~lgai~NlVme-fs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~ 482 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMD------PEIMIMGITLGAICNLVME-FSNLKSKFLRNNGIDILESMLTDPDFNSRANSL 482 (678)
T ss_pred HHHcCCccchhHHHHHHHhhC------cchhHHHHHHHHHHHHHhh-cccHHHHHHHcCcHHHHHHHhcCCCchHHHHHH
Confidence 344445567788999999987 6678899999999999987 677888999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhh
Q 002091 795 TSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTL 874 (968)
Q Consensus 795 ~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L 874 (968)
|+|.++..+.. .+-.+.+...=....++.+..+++++|++.+...|.||
T Consensus 483 ~~Lr~l~f~~d-------------------------------e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 483 WVLRHLMFNCD-------------------------------EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHHHHhcch-------------------------------HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999986442 22333333333455667777889999999999999999
Q ss_pred h
Q 002091 875 I 875 (968)
Q Consensus 875 ~ 875 (968)
.
T Consensus 532 ~ 532 (678)
T KOG1293|consen 532 T 532 (678)
T ss_pred h
Confidence 9
No 39
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=5.1e-10 Score=124.11 Aligned_cols=433 Identities=18% Similarity=0.199 Sum_probs=250.2
Q ss_pred hhHHHHHHhh----ccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCC--ch
Q 002091 380 DAVESIVRSL----GRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFS--DD 453 (968)
Q Consensus 380 ~~v~~lv~~L----~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~--~~ 453 (968)
.++..+...| +.+++.++++...+..+-..+++...+.- .|+ -+++.+...|..|...|+|=... ..
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~------IL~-~~~~~d~~~Rs~aGLlLKNnvr~~~~~ 82 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIY------ILI-RAKSEDVPTRSLAGLLLKNNVRGHYNS 82 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeE------EEe-cccccchhHHHHhhhhHhccccccccC
Confidence 3444455444 44556777777777666545555443322 111 13466777777777777764311 11
Q ss_pred hHHHHHhCCchHH-HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC
Q 002091 454 NVVQMAKANYFKH-LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 454 n~~~i~~~g~v~~-Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
.... ..++++. +++-|...++-+|...--++..+++...... -+.++|.|.++|.+.+....+-|.+||.++|.
T Consensus 83 ~~~~--~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~---wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 83 IPSE--VLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQH---WPELLPQLCELLDSPDYNTCEGAFGALQKICE 157 (885)
T ss_pred CChH--HHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccccc---chhHHHHHHHHhcCCcccccchhHHHHHHHHh
Confidence 0110 0111111 2233334444444333333333332221110 15688999999999999999999999999996
Q ss_pred CCccHH-H-HHH---cCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccC
Q 002091 533 VPQNGL-Q-MIK---EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT 607 (968)
Q Consensus 533 ~~~~~~-~-i~~---~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~ 607 (968)
+....- . ... .-.+|.++++.++++ +.++..|+.++-....... ..-.+.-+.++..+..+-+..
T Consensus 158 Dsa~~lds~~~~rpl~~mipkfl~f~~h~s---pkiRs~A~~cvNq~i~~~~-------qal~~~iD~Fle~lFalanD~ 227 (885)
T KOG2023|consen 158 DSAQFLDSDVLTRPLNIMIPKFLQFFKHPS---PKIRSHAVGCVNQFIIIQT-------QALYVHIDKFLEILFALANDE 227 (885)
T ss_pred hhHHHHhhhcccCchHHhHHHHHHHHhCCC---hhHHHHHHhhhhheeecCc-------HHHHHHHHHHHHHHHHHccCC
Confidence 432210 0 000 125788888888775 8999999988765442111 011233356677788888899
Q ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHH
Q 002091 608 GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETL 687 (968)
Q Consensus 608 ~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~L 687 (968)
+|++|++++++|..|.... .+.+...+ .++++.++..-+..+++|...||.....+++..-....-.-.-...+|.|
T Consensus 228 ~~eVRk~vC~alv~Llevr-~dkl~phl--~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 228 DPEVRKNVCRALVFLLEVR-PDKLVPHL--DNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVL 304 (885)
T ss_pred CHHHHHHHHHHHHHHHHhc-HHhcccch--HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence 9999999999999886421 11111111 24566666666778899999999999999844432221111112455555
Q ss_pred HHHhccCCCHH------------------HH----HHHHHHH----------------------hcCCC----CHHhHHH
Q 002091 688 VTIIQSSHNEE------------------EI----ASAMGIL----------------------SKLPE----VPQFTQW 719 (968)
Q Consensus 688 v~lL~~~~~~~------------------~~----~~Al~~L----------------------~nL~~----~~~~~~~ 719 (968)
+.-+.....+. ++ ..-.... +||-. .-+.-..
T Consensus 305 l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan 384 (885)
T KOG2023|consen 305 LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN 384 (885)
T ss_pred HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH
Confidence 54332211100 00 0000000 11111 1111122
Q ss_pred HHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc--CChHHHHHHhhcCChHHHHHHHHHH
Q 002091 720 LLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA--GVIPKLVQLLEYGTTLTKEHAATSL 797 (968)
Q Consensus 720 l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~--g~i~~Lv~lL~~~~~~v~~~Aa~aL 797 (968)
+.....++.+..+|+..-.+ ....+||.++-+|+.++.+ +.+-+..+ ..+|.|+.+|.+..+-||...||+|
T Consensus 385 vf~~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEG----cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 385 VFGDELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEG----CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred hhHHHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHH----HhhhcccchHHHHHHHHHHhccCccceeeeeeeeH
Confidence 33444566666666653221 5678999999999999976 22223222 3689999999999999999999999
Q ss_pred hhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 798 ARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 798 ~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
+.++..-.. .+ ....+. .++..|++.+-++|..|+++|+.|+.++-
T Consensus 459 sRys~wv~~-----------------------------~~-~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 459 SRYSKWVVQ-----------------------------DS-RDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred hhhhhhHhc-----------------------------CC-hHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999842210 11 111111 25667777777899999999999999998
No 40
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.5e-09 Score=120.63 Aligned_cols=353 Identities=14% Similarity=0.193 Sum_probs=253.3
Q ss_pred cCchHHHHHhhhcC-CHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091 502 GNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 579 (968)
Q Consensus 502 ~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 579 (968)
.-++|.|+.+|+.. +.++...|++||.+|+. .|+....+++.++||.|++-|..-. ..++.++++.+|-.|+...
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie--yiDvAEQ~LqALE~iSR~H- 286 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE--YIDVAEQSLQALEKISRRH- 286 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh--hhHHHHHHHHHHHHHHhhc-
Confidence 45789999999876 78999999999999995 9999999999999999998776422 4789999999999998632
Q ss_pred cccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHH
Q 002091 580 YQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 659 (968)
Q Consensus 580 ~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a 659 (968)
...++ ..|++...+.+++=.+...|..|+.+-.|+|..-..++..-++ .++|.|..++...+....+.+
T Consensus 287 -------~~AiL-~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~---ealPlL~~lLs~~D~k~ies~ 355 (1051)
T KOG0168|consen 287 -------PKAIL-QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM---EALPLLTPLLSYQDKKPIESV 355 (1051)
T ss_pred -------cHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH---HHHHHHHHHHhhccchhHHHH
Confidence 11244 4566666677776667889999999999999875555544444 379999999999999999999
Q ss_pred HHHHHHhc--cCCChhHHHHhhccccHHHHHHHhccCC---CHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHh
Q 002091 660 VKLFCCLV--DDGDEAIIREHVGQKCLETLVTIIQSSH---NEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFL 733 (968)
Q Consensus 660 ~~~L~~Ls--~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL 733 (968)
+.++..++ +.+.++..+.+...+.+....++|.-.. +..+....++.|..++. .+.....+...++...+..+|
T Consensus 356 ~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il 435 (1051)
T KOG0168|consen 356 CICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRIL 435 (1051)
T ss_pred HHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHH
Confidence 99999988 3455677778888899998888886542 23456677888888888 788999999999999998888
Q ss_pred hcCCCCC---------CchhHHHHHHHHHHhhccCC--------------------------------------------
Q 002091 734 KNGRQND---------PNRFQVVENAVGALRRFTAP-------------------------------------------- 760 (968)
Q Consensus 734 ~~~~~~~---------~~~~~v~e~a~~aL~~L~~~-------------------------------------------- 760 (968)
...+.+. +...++-+-....+.-|-..
T Consensus 436 ~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri 515 (1051)
T KOG0168|consen 436 QGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRI 515 (1051)
T ss_pred hccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhh
Confidence 7622110 01111211111111100000
Q ss_pred ----------------------------CCHHHHHHHHHcCChHHHHHHhhcC-ChHHHHHHHHHHhhhcccCCCCCCCC
Q 002091 761 ----------------------------TNLEWQKRAAEAGVIPKLVQLLEYG-TTLTKEHAATSLARFSKNSLGLSRPI 811 (968)
Q Consensus 761 ----------------------------~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~nl~~~s~~l~~~~ 811 (968)
..|+.-+.+. ...+|.|++...++ ++.|+..+..||..+...+
T Consensus 516 ~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s------- 587 (1051)
T KOG0168|consen 516 IEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFS------- 587 (1051)
T ss_pred hhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhC-------
Confidence 0111222222 24789999999876 8899999999999987432
Q ss_pred CCCCcccccCCCCCcccccCCCccCcccchHHhhc-CChHHHHhhccCCChhhhHHHHHHHHhhhcccc-cchhhHHHHh
Q 002091 812 PKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEA-NAVRPLVRVLEDPDHGACEASLDALVTLIEGER-LQNGSKVLED 889 (968)
Q Consensus 812 ~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~-g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~-~~~~~~~i~~ 889 (968)
+.+-...++.. ++-..+-.+|.++|..+...|+....-|. ++ .+.....|..
T Consensus 588 ------------------------~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLm--eKlpd~F~~~F~R 641 (1051)
T KOG0168|consen 588 ------------------------NSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILM--EKLPDTFSPSFRR 641 (1051)
T ss_pred ------------------------CHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHH--HHhHHHhhhhHhh
Confidence 23334444443 45555667888889988888888777666 11 1245677888
Q ss_pred cCcHHHHHHHhcC
Q 002091 890 ANAIDRMVRFLSS 902 (968)
Q Consensus 890 ~~~i~~L~~ll~~ 902 (968)
.|.+..+.+|...
T Consensus 642 EGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 642 EGVFHAVKQLSVD 654 (1051)
T ss_pred hhHHHHHHHHhcc
Confidence 9999999888863
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.3e-08 Score=110.11 Aligned_cols=557 Identities=17% Similarity=0.171 Sum_probs=302.8
Q ss_pred ccccCcccCCCchHHHHHhHHHHHHHhhhcchh--hHHHHhcccchhHHHHHHhhcc-ChHHHHHHHHHHHHhcc--Chh
Q 002091 337 IASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQH--REWERLANGDDAVESIVRSLGR-RIEERKLAVALLLELST--CNT 411 (968)
Q Consensus 337 ~~~~~~~l~~~~~~~~~~aL~~l~~~~~~~~~~--r~~~~i~~~~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~--~~~ 411 (968)
+|....-|.+.|....-.|...|++.|+++... +.+. --...-.++.+..+... ++..+..|+.++..+-- ...
T Consensus 130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~-~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL-TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc-cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 344444455555555555677777777765431 1000 00002345666666644 56778888888776533 222
Q ss_pred HHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 002091 412 LRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL 491 (968)
Q Consensus 412 ~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~ 491 (968)
....| ...+..|..+-..+++++|.+.+.+|..|-..-..|..---.+.++.++......+.++-.+|+.....++.
T Consensus 209 l~~~i---D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 209 LYVHI---DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHH---HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 22222 234666777777889999999999988875333322221223556667777777788888999999999988
Q ss_pred CchhhHHHhh--cCchHHHHH----------hhhcC-C------------------------------------------
Q 002091 492 TDHHKASLLE--GNVLGPLLH----------LVSRG-D------------------------------------------ 516 (968)
Q Consensus 492 ~~~~~~~i~~--~g~i~~Lv~----------lL~~~-~------------------------------------------ 516 (968)
.+..+..+.. ...||.|+. +|++. +
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 8766655554 567777775 33310 0
Q ss_pred ---HHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHh----cccCCCCcchHHHHHHHHHHhhcCcccccCCCCccc
Q 002091 517 ---IQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLL----LHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVT 589 (968)
Q Consensus 517 ---~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL----~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~ 589 (968)
-.+|+.++.+|--|+. +.....++.++-+| .+.. =.+++.++-+|+.++.+.-.--
T Consensus 366 ~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~------- 428 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEE---WKVREAGVLALGAIAEGCMQGF------- 428 (885)
T ss_pred cccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcch---hhhhhhhHHHHHHHHHHHhhhc-------
Confidence 1245555555555542 11223344444444 4332 3578888999999987431100
Q ss_pred cccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccC
Q 002091 590 LLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDD 669 (968)
Q Consensus 590 il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~ 669 (968)
+=.-...++.++.++++..|-+|.-.+|+|...+..--..+-.+.+.. .+..|++.+-+++..|+++||.++..+-+.
T Consensus 429 ~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 429 VPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred ccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 001135788999999999999999999999987643211111111111 233344444567899999999999999754
Q ss_pred CChhHHHHhhccccHHHHHHHhccC--CCHHHHHHHHHHHhcCCC----CHHhHHHHH------------HcCCHHHHHH
Q 002091 670 GDEAIIREHVGQKCLETLVTIIQSS--HNEEEIASAMGILSKLPE----VPQFTQWLL------------DAGALPIVLN 731 (968)
Q Consensus 670 ~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~~Al~~L~nL~~----~~~~~~~l~------------~~g~l~~Lv~ 731 (968)
..++..... ...+..|+..+... .+--+...|.+.|+.=+. .+...+.++ +..-+=+|++
T Consensus 507 A~~eLVp~l--~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLE 584 (885)
T KOG2023|consen 507 AGEELVPYL--EYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLE 584 (885)
T ss_pred ccchhHHHH--HHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHH
Confidence 444322211 12344444444332 233445566666654321 111111110 0000111111
Q ss_pred H-------hhcCCCCCCchhHHHHHHH-------------------------------HHHhhccCCCCHHHHHHHHHcC
Q 002091 732 F-------LKNGRQNDPNRFQVVENAV-------------------------------GALRRFTAPTNLEWQKRAAEAG 773 (968)
Q Consensus 732 l-------L~~~~~~~~~~~~v~e~a~-------------------------------~aL~~L~~~~~~~~~~~~~~~g 773 (968)
. |..|-. +....+=..++ ..+.-|+.+........+..+|
T Consensus 585 ClSsia~AL~~gF~--P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~sn 662 (885)
T KOG2023|consen 585 CLSSIASALGVGFL--PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSN 662 (885)
T ss_pred HHHHHHHHHhcccc--ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhcc
Confidence 1 111110 11222222333 3333333332333445667788
Q ss_pred ChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHH
Q 002091 774 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLV 853 (968)
Q Consensus 774 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv 853 (968)
+...+...+.+.-|+||..|-..|+.++..- +-|. .-++ ++.++.|-
T Consensus 663 l~~lll~C~~D~~peVRQS~FALLGDltk~c------------------------~~~v-------~p~~--~~fl~~lg 709 (885)
T KOG2023|consen 663 LLDLLLQCLQDEVPEVRQSAFALLGDLTKAC------------------------FEHV-------IPNL--ADFLPILG 709 (885)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHH------------------------HHhc-------cchH--HHHHHHHh
Confidence 8889999999999999999999999998421 1110 0000 11223333
Q ss_pred hhccCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCcHHHHHHHhcCC--ChHHHHHHHHHHHHHhc-ChhhHHHh
Q 002091 854 RVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSP--SPKLQEKALDSVERIFR-LPEFKQKY 928 (968)
Q Consensus 854 ~lL~~~~~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~ 928 (968)
.-|...+..+..+|+||+..++ -+.+.+... ...+..|+.+++.+ +..+.++..-++.++.. +++.....
T Consensus 710 ~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v-----~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~ 784 (885)
T KOG2023|consen 710 ANLNPENISVCNNAIWAIGEIALKMGLKMKQYV-----SPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPH 784 (885)
T ss_pred hcCChhhchHHHHHHHHHHHHHHHhchhhhhHH-----HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchh
Confidence 3333445569999999999999 332222222 22345566666443 35688888888888853 23321111
Q ss_pred cccCCchhhhhccc-CCchhhHHHHHHHHHH
Q 002091 929 GKSAQMPLVDLTQR-GNSSMKSLSARVLAHL 958 (968)
Q Consensus 929 ~~~~~~~Lv~ll~~-~~~~~~~~A~~aL~~L 958 (968)
-.....+.-..+.+ ++.+.|..|-+-+.++
T Consensus 785 l~~f~~pWc~sl~~i~DneEK~sAFrG~c~m 815 (885)
T KOG2023|consen 785 LDSFMRPWCTSLRNIDDNEEKESAFRGLCNM 815 (885)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHh
Confidence 11122333333333 5566677775555443
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.08 E-value=3.7e-08 Score=109.62 Aligned_cols=353 Identities=15% Similarity=0.102 Sum_probs=227.7
Q ss_pred ChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcccccc-----chhHHHHHHHhhccCCHHHHHHHHHHH
Q 002091 545 AVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLE-----SDKEIFMLFSLINLTGPNVQQRILQTF 619 (968)
Q Consensus 545 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~-----~~~~i~~l~~ll~~~~~~~~~~al~~L 619 (968)
.+..++.++.... .+++.++.+..+.-|......+.. .+. ..+....++.+++..+.-++..+...|
T Consensus 54 y~~~~l~ll~~~~--~~d~vqyvL~Li~dll~~~~~~~~------~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 54 YVKTFVNLLSQID--KDDTVRYVLTLIDDMLQEDDTRVK------LFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHhccC--cHHHHHHHHHHHHHHHHhchHHHH------HHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 3455566665432 245666666666665553322111 111 134556777788888888999999999
Q ss_pred HHhccCCChhhHHHHHhhcCchHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCC-CH
Q 002091 620 NALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH-NE 697 (968)
Q Consensus 620 ~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~ 697 (968)
..+...+.... ...... -...-|...+++. +...+.-++.+|..|. ..++.+..+...++++.|+.+|+... +.
T Consensus 126 t~l~~~~~~~~-~~~~l~-~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL--~~~~~R~~f~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 126 AKLACFGLAKM-EGSDLD-YYFNWLKEQLNNITNNDYVQTAARCLQMLL--RVDEYRFAFVLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred HHHHhcCcccc-chhHHH-HHHHHHHHHhhccCCcchHHHHHHHHHHHh--CCchHHHHHHHccCHHHHHHHHhhccccH
Confidence 99875422111 000000 1233445555544 4667777888898885 34556677777789999999998765 67
Q ss_pred HHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCC-----CHHHHHHHHHc
Q 002091 698 EEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT-----NLEWQKRAAEA 772 (968)
Q Consensus 698 ~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~-----~~~~~~~~~~~ 772 (968)
+.+..++-+++-|+.+++........+.++.++++++.. ....+..-++.+|.|+.... .......+++.
T Consensus 202 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s-----~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~ 276 (429)
T cd00256 202 QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKES-----TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC 276 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc
Confidence 899999999999999777878888889999999999984 56778889999999999852 12344566777
Q ss_pred CChHHHHHHhhc--CChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCC-ccCcccchHHhhc--C
Q 002091 773 GVIPKLVQLLEY--GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG-LCGIESSFCLLEA--N 847 (968)
Q Consensus 773 g~i~~Lv~lL~~--~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~-~c~~~~~~~l~~~--g 847 (968)
|+.+.+-.+... +|+++...-...-..|...-..++...... .-+....-.+.|+|.. ..=.++...+-+. .
T Consensus 277 ~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~---~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~ 353 (429)
T cd00256 277 KVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYK---SELRSGRLHWSPVHKSEKFWRENADRLNEKNYE 353 (429)
T ss_pred ChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHH---HHHhcCCccCCCCCCCchHHHHHHHHHHhcchH
Confidence 776655555443 366666544444333332211111100000 0000111235567732 1112333333332 4
Q ss_pred ChHHHHhhcc-CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 002091 848 AVRPLVRVLE-DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 919 (968)
Q Consensus 848 ~i~~Lv~lL~-~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 919 (968)
.+..|+++|. +.|+.+...||.=++.++ .....++..+.+.|+-+.+.++++++|++|+..|+.++.++.
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~v--r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYV--RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHH--HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6788999995 567778888888888888 122367888889999999999999999999999999999885
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.05 E-value=9.2e-06 Score=97.66 Aligned_cols=487 Identities=12% Similarity=0.068 Sum_probs=289.3
Q ss_pred chHHHHHhHHHHHHHhhhcchhhHHHHhcccchhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHH
Q 002091 348 EVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDVQGCILL 425 (968)
Q Consensus 348 ~~~~~~~aL~~l~~~~~~~~~~r~~~~i~~~~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~ 425 (968)
+......+++++......... .......+++.+++ +.+.++-..-.+..+++ +++... =++..
T Consensus 45 ~~~~kk~alKkvIa~mt~G~D---------vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal------LaINt 109 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTMGRD---------VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL------LAVNT 109 (746)
T ss_pred CHHHHHHHHHHHHHHHHCCCC---------chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH------HHHHH
Confidence 344455567664444322211 02334455565544 34455545445555665 444321 13566
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCch
Q 002091 426 LVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVL 505 (968)
Q Consensus 426 Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i 505 (968)
+.+-+.++++.+|..|+++|.++-..+ -.. -.+.++.+.|.+.++.+|..|+-++.++-..+. ..+.+.|.+
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir~~~-i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~ 181 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIRVSS-VLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFK 181 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCCcHH-HHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchH
Confidence 777888999999999999998763211 111 124556677888899999999999999854322 123356889
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCC
Q 002091 506 GPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQ 585 (968)
Q Consensus 506 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~ 585 (968)
+.|.++|.+.++.+..+|+.+|..+.......-. ...+.+..|+..|.+.+ +-.+...+.+|..-. +...
T Consensus 182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~---EW~Qi~IL~lL~~y~--P~~~---- 251 (746)
T PTZ00429 182 KDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECN---EWGQLYILELLAAQR--PSDK---- 251 (746)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCC---hHHHHHHHHHHHhcC--CCCc----
Confidence 9999999999999999999999999854332211 22344556666665443 334555555553311 1110
Q ss_pred CccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHH
Q 002091 586 TPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCC 665 (968)
Q Consensus 586 ~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~ 665 (968)
-.....+..+...+.+.++.+.-.+++++.++........++..+.. ....|+.++ +++++++..++..+..
T Consensus 252 -----~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r--l~~pLv~L~-ss~~eiqyvaLr~I~~ 323 (746)
T PTZ00429 252 -----ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVR--VNTALLTLS-RRDAETQYIVCKNIHA 323 (746)
T ss_pred -----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH--HHHHHHHhh-CCCccHHHHHHHHHHH
Confidence 11245667777788889999999999999998754222222222211 235566664 5678899999988877
Q ss_pred hccCCChhHHHHhhccccHHHHHHH--hccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCch
Q 002091 666 LVDDGDEAIIREHVGQKCLETLVTI--IQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNR 743 (968)
Q Consensus 666 Ls~~~~~~~~~~~~~~~~i~~Lv~l--L~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~ 743 (968)
+.. ..+.. +..-++. ....++..++...+.+|..|+....... + +.-|.+...+ .+
T Consensus 324 i~~-~~P~l---------f~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~-I-----L~EL~eYa~d------~D 381 (746)
T PTZ00429 324 LLV-IFPNL---------LRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPE-I-----LKELAEYASG------VD 381 (746)
T ss_pred HHH-HCHHH---------HHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHH-H-----HHHHHHHhhc------CC
Confidence 762 22211 1111222 1222445688999999999987333322 2 2445555555 56
Q ss_pred hHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCC
Q 002091 744 FQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPP 823 (968)
Q Consensus 744 ~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~ 823 (968)
..++..++.++++++.. -+... ...+..|+.++..+.. +...+...+.++....++
T Consensus 382 ~ef~r~aIrAIg~lA~k-~~~~a-----~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~----------------- 437 (746)
T PTZ00429 382 MVFVVEVVRAIASLAIK-VDSVA-----PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPE----------------- 437 (746)
T ss_pred HHHHHHHHHHHHHHHHh-ChHHH-----HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCcc-----------------
Confidence 78999999999999975 33322 2346778888876543 445678888888632211
Q ss_pred CCcccccCCCccCcccchHHhhcCChHHHHhhc---cCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHh
Q 002091 824 PEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL---EDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFL 900 (968)
Q Consensus 824 ~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL---~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll 900 (968)
. -.+..|+.-+ .-.++..+.+.+|.|+.+.+ .+. ++...|..++
T Consensus 438 ---------------~-------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~---------~I~--~a~~~L~~~i 484 (746)
T PTZ00429 438 ---------------L-------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD---------FIE--NGKDIIQRFI 484 (746)
T ss_pred ---------------H-------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHh---------hHh--hHHHHHHHHH
Confidence 0 0345555433 12467788888888888761 111 1223333333
Q ss_pred ---cCCChHHHHHHHHHHHHHhcCh--hhHHHhcccCCchhhh-hcc-cCCchhhHHHHHHHHHHh
Q 002091 901 ---SSPSPKLQEKALDSVERIFRLP--EFKQKYGKSAQMPLVD-LTQ-RGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 901 ---~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~Lv~-ll~-~~~~~~~~~A~~aL~~L~ 959 (968)
...++.||-..+.+..++|-.. +.+..+ ..++. +.. +.|+++|.+|.--.+-|+
T Consensus 485 ~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l-----~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 485 DTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQL-----NRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred hhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHH-----HHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 3456788888888888886432 222111 22332 223 466788888865454443
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.03 E-value=3.1e-09 Score=99.28 Aligned_cols=116 Identities=28% Similarity=0.384 Sum_probs=105.2
Q ss_pred HHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCC-
Q 002091 457 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP- 534 (968)
Q Consensus 457 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~- 534 (968)
.+.+.|+++.++++|.++++..+..++.+|.+++.. ++.+..+.+.|+++.|++++.++++.++..|+++|++|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356889999999999999999999999999999776 778888888999999999999999999999999999999755
Q ss_pred ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
..+..+.+.|+++.|++++.+.+ ..+++.++++|.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~---~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN---EDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC---HHHHHHHHHHHHHhh
Confidence 56777888999999999998765 789999999999987
No 45
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.00 E-value=2e-10 Score=83.67 Aligned_cols=39 Identities=36% Similarity=0.746 Sum_probs=30.5
Q ss_pred ccccccCCCCceecCCchhhhHHHHHHHHhcCC---CCCCCC
Q 002091 268 CPITRDVMVDPVETSSGQTFERSAIEKWFSDGN---NLCPLT 306 (968)
Q Consensus 268 cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~---~~CP~t 306 (968)
||||+++|+|||+++|||+||+.||++|++..+ ..||.+
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999987432 579875
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.93 E-value=1.3e-08 Score=94.94 Aligned_cols=116 Identities=30% Similarity=0.372 Sum_probs=106.1
Q ss_pred hhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhh
Q 002091 678 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRR 756 (968)
Q Consensus 678 ~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~ 756 (968)
+++.|+++.|+++|.+. +..++..++.+|++++. ++.....+.+.|+++.++.+|.+ .+..++..++++|++
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~------~~~~v~~~a~~~L~~ 75 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS------EDEEVVKAALWALRN 75 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC------CCHHHHHHHHHHHHH
Confidence 45678999999999875 57899999999999999 69999999999999999999998 578999999999999
Q ss_pred ccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 757 FTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 757 L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
++.. .+.....+.+.|+++.|+.++.+.+..+++.++++|.+++
T Consensus 76 l~~~-~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 76 LAAG-PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HccC-cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9996 6677888889999999999999999999999999999986
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.92 E-value=3e-07 Score=102.46 Aligned_cols=325 Identities=16% Similarity=0.157 Sum_probs=223.7
Q ss_pred ChHHHHHHhhc-CCCHHHHHHHHHHHHhccCCchhHH-HHHh-----CCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc
Q 002091 421 GCILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVV-QMAK-----ANYFKHLLQRLSAGPESVKMRMATTLAEMELTD 493 (968)
Q Consensus 421 g~i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~~~~n~~-~i~~-----~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~ 493 (968)
.++..++.+++ ....++.+..+..+..+...++.+. .+.+ .....+++.+|..++.-+...++.+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 45566666664 4556666666666666665554433 2333 356778888998888888889999998884322
Q ss_pred -hhhHHHhhcCchHHHHHhhhcC-CHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHH
Q 002091 494 -HHKASLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAI 571 (968)
Q Consensus 494 -~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L 571 (968)
.........-....|...+++. +...+..|+.+|..|...++.|..+.+.++++.|+++|+....+ ..++.+++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~-~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLG-FQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcccc-HHHHHHHHHHH
Confidence 1111000011334455566554 47888899999999999999999999999999999999864322 57899999999
Q ss_pred HHhhcCcccccCCCCccccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCC----hhhHHHHHhhcCchHHHHH
Q 002091 572 MHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPS----AGNIKTTLTQCSAIPVLVQ 646 (968)
Q Consensus 572 ~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~----~~~~~~~i~~~g~i~~Lv~ 646 (968)
+-|+..+...+ .....+.++.++.+++ +....+..-++.+|.|+...+. .......|.++|..+.+-.
T Consensus 212 WlLSF~~~~~~-------~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~ 284 (429)
T cd00256 212 WLLTFNPHAAE-------VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQS 284 (429)
T ss_pred HHHhccHHHHH-------hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHH
Confidence 99998765333 3556789999999988 4466788889999999986532 2234456677665554444
Q ss_pred hhcc--CChhHHHHHHH-------HHHHhcc-----------------CCCh-----hHHHHhhcc--ccHHHHHHHhcc
Q 002091 647 LCEH--DNENVRANAVK-------LFCCLVD-----------------DGDE-----AIIREHVGQ--KCLETLVTIIQS 693 (968)
Q Consensus 647 ll~~--~~~~v~~~a~~-------~L~~Ls~-----------------~~~~-----~~~~~~~~~--~~i~~Lv~lL~~ 693 (968)
+... .|+++.+..-. -+..+++ .+.+ ++...+-+. ..+..|+++|..
T Consensus 285 L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~ 364 (429)
T cd00256 285 LEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET 364 (429)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 4433 25655544332 2222321 0000 122222222 367889999977
Q ss_pred CCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccC
Q 002091 694 SHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 759 (968)
Q Consensus 694 ~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~ 759 (968)
++++.+..-|+.-++.++. .|..+..+-+-|+=..+++++.+ +++.++.+|+.++..+..
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h------~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNH------EDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcC------CCHHHHHHHHHHHHHHHH
Confidence 6777788888999999999 88899888889999999999999 788999999999887643
No 48
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.89 E-value=1e-09 Score=106.27 Aligned_cols=61 Identities=28% Similarity=0.414 Sum_probs=52.9
Q ss_pred CCCCcccccccccCCCCceecCCchhhhHHHHHHHHhc---------------CCCCCCCCCCcCCCCCCccCHhH
Q 002091 261 EPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD---------------GNNLCPLTMTVLDTSILRPNKTL 321 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~---------------~~~~CP~t~~~l~~~~l~pn~~l 321 (968)
+..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.++....++|.+.-
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 34478999999999999999999999999999999742 24689999999999999988643
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.85 E-value=5.5e-07 Score=96.43 Aligned_cols=309 Identities=13% Similarity=0.078 Sum_probs=209.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHH-HHHhhcCchHHHHHhhcc-CChhHHHHHHHHHHHhccCCChhH
Q 002091 597 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIK-TTLTQCSAIPVLVQLCEH-DNENVRANAVKLFCCLVDDGDEAI 674 (968)
Q Consensus 597 i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~-~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~Ls~~~~~~~ 674 (968)
...++.++...++-+.+...+++..++..+...--. ..-. ....|-.++.+ .+.+-..-|+++|..+. .-++.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll--~~~ey 190 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLL--RVDEY 190 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHh--cCcch
Confidence 467788899999999998888888887553221100 0000 12234445555 45667777888888886 34556
Q ss_pred HHHhhccccHHHHHHHh-ccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHH
Q 002091 675 IREHVGQKCLETLVTII-QSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGA 753 (968)
Q Consensus 675 ~~~~~~~~~i~~Lv~lL-~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~a 753 (968)
+-.++...++..++..+ ....+-+++...+-+++-|+.++...+.+...+.++.|..++++. ....|..-.+.+
T Consensus 191 R~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~-----~KEKV~Rivlai 265 (442)
T KOG2759|consen 191 RYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES-----TKEKVTRIVLAI 265 (442)
T ss_pred hheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 77778888899999998 555688899999999999999999999998889999999999984 467788889999
Q ss_pred HhhccCCCC-H----HHHHHHHHcCChHHHHHHhhc--CChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCc
Q 002091 754 LRRFTAPTN-L----EWQKRAAEAGVIPKLVQLLEY--GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEI 826 (968)
Q Consensus 754 L~~L~~~~~-~----~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~ 826 (968)
+.|+...+. . +....++..++.+.+-.+... +|+++....-..-..|..+...|+...... .-+....-.
T Consensus 266 ~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~---sEl~sG~L~ 342 (442)
T KOG2759|consen 266 FRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYK---SELRSGRLE 342 (442)
T ss_pred HHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHH---HHHHhCCcC
Confidence 999998731 1 333455666655555555443 366666555544444443322222110000 000011123
Q ss_pred ccccCCCccC-cccchHHhhc--CChHHHHhhccCC-ChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcC
Q 002091 827 GCQVHGGLCG-IESSFCLLEA--NAVRPLVRVLEDP-DHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSS 902 (968)
Q Consensus 827 ~c~~h~~~c~-~~~~~~l~~~--g~i~~Lv~lL~~~-~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~ 902 (968)
+.|+|..--- .++..++-+. ..+..|+.+|+.+ ||.+...|+.=+..+. ....++...+.+.||-+.+.+++++
T Consensus 343 WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V--r~yP~gk~vv~k~ggKe~vM~Llnh 420 (442)
T KOG2759|consen 343 WSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV--RHYPEGKAVVEKYGGKERVMNLLNH 420 (442)
T ss_pred CCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH--HhCchHhHHHHHhchHHHHHHHhcC
Confidence 4455522211 2344555443 5788999999965 4667777888888887 2223788999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhc
Q 002091 903 PSPKLQEKALDSVERIFR 920 (968)
Q Consensus 903 ~~~~v~~~a~~~L~~l~~ 920 (968)
+||+|+..|+.++.++..
T Consensus 421 ~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 421 EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 999999999999998864
No 50
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=4.2e-09 Score=115.18 Aligned_cols=69 Identities=30% Similarity=0.413 Sum_probs=62.5
Q ss_pred CCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhc
Q 002091 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRN 332 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 332 (968)
-..|.||||++++.+||+++|||+||+.||..|+.. ...||.|+..+....+.+|..+.++|+.|....
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 367999999999999999999999999999999965 458999999998779999999999999997543
No 51
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.2e-06 Score=96.41 Aligned_cols=430 Identities=15% Similarity=0.149 Sum_probs=245.4
Q ss_pred hHHHHHHhhccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc--CCCHHHHHHHHHHHHhcc--CCchhHH
Q 002091 381 AVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS--SDDNQASRDAQELLENLS--FSDDNVV 456 (968)
Q Consensus 381 ~v~~lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--s~~~~~~~~a~~~L~~Ls--~~~~n~~ 456 (968)
+++.+.+.++.+...+..|-..|..++..+ .++.+..|...|- ......|..|.-.|+|-- ++++-+.
T Consensus 3 ~~~~le~tlSpD~n~~~~Ae~~l~~~~~~n--------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 3 LLELLEKTLSPDQNVRKRAEKQLEQAQSQN--------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 345566677777777877877777665421 1233444555553 234566777777788763 3333222
Q ss_pred HHHh--CC-------chH-HHHHHHhcCCHHHHHHHHHHHHHhccC--chhhHHHhhcCchHHHHHhhhcCCH-HHHHHH
Q 002091 457 QMAK--AN-------YFK-HLLQRLSAGPESVKMRMATTLAEMELT--DHHKASLLEGNVLGPLLHLVSRGDI-QMKKVA 523 (968)
Q Consensus 457 ~i~~--~g-------~v~-~Lv~~L~~~~~~~~~~aa~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a 523 (968)
.... .+ .|+ .+.+-|.+..+.....|+.++..++.- +.+. -++.|+.|+....++.+ .+|+.+
T Consensus 75 ~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~----wp~li~~lv~nv~~~~~~~~k~~s 150 (859)
T KOG1241|consen 75 QYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQ----WPELIVTLVSNVGEEQASMVKESS 150 (859)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhh----CHHHHHHHHHhcccccchHHHHHH
Confidence 2211 00 011 122334433333333344444444221 1111 14566666666655544 589999
Q ss_pred HHHHHHhcCCCccHHHHHHc-CChHHHHHHhcccCCCCcchHHHHHHHHHHhhcC---cccccCCCCccccccchhHHHH
Q 002091 524 VKALRNLSSVPQNGLQMIKE-GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS---TMYQESSQTPVTLLESDKEIFM 599 (968)
Q Consensus 524 ~~aL~~Ls~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~---~~~~~~~~~~~~il~~~~~i~~ 599 (968)
+.+|+.+|.+-......-.. .++.+++.-++.... +..++-.|+.+|.|-..- .-..+. ...-+...
T Consensus 151 lealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~-s~~vRLaa~~aL~nsLef~~~nF~~E~--------ern~iMqv 221 (859)
T KOG1241|consen 151 LEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEET-SAAVRLAALNALYNSLEFTKANFNNEM--------ERNYIMQV 221 (859)
T ss_pred HHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCC-chhHHHHHHHHHHHHHHHHHHhhccHh--------hhceeeee
Confidence 99999999643333222222 456667766665432 367888999999886541 111111 01112223
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChh--HHHH
Q 002091 600 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEA--IIRE 677 (968)
Q Consensus 600 l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~--~~~~ 677 (968)
..+.-.+.+.+++..+..+|..+..- .-..+...|.++ ....-+.-++++++++...++..-++++....+- ...+
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~L-yY~~m~~yM~~a-lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e 299 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMSL-YYEFMEPYMEQA-LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE 299 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444577889999999999998742 112223333332 3445556678899999999999888877211110 0011
Q ss_pred hhc---------------cccHHHHHHHhccC------CCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcC
Q 002091 678 HVG---------------QKCLETLVTIIQSS------HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 736 (968)
Q Consensus 678 ~~~---------------~~~i~~Lv~lL~~~------~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~ 736 (968)
..+ .+.+|.|+++|... ++.....+|..+|.-++. ......+++++.+++..
T Consensus 300 ~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~ 372 (859)
T KOG1241|consen 300 AVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEEN 372 (859)
T ss_pred HhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHh
Confidence 111 25677888887552 122344455555544433 12233455555555532
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 002091 737 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKG 816 (968)
Q Consensus 737 ~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~ 816 (968)
-.+ ++..-++.++.+++.+-.+ .+..+..-.-.+++|.++.++.+.+-.++..++|+++.++..-+.-..+
T Consensus 373 i~~--pdwr~reaavmAFGSIl~g-p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n------ 443 (859)
T KOG1241|consen 373 IQN--PDWRNREAAVMAFGSILEG-PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIIN------ 443 (859)
T ss_pred cCC--cchhhhhHHHHHHHhhhcC-CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhccc------
Confidence 111 6778899999999999887 3344444456788999999999888899999999999998543210000
Q ss_pred ccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 817 FWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 817 ~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
.......+..|+.-|. +.|.+..+++||+.+|+
T Consensus 444 -------------------------~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 444 -------------------------QELLQSKLSALLEGLN-DEPRVASNVCWAFISLA 476 (859)
T ss_pred -------------------------HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHH
Confidence 0111234444444444 47889999999999998
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.73 E-value=3.9e-09 Score=82.15 Aligned_cols=44 Identities=39% Similarity=0.769 Sum_probs=32.0
Q ss_pred CcccccccccCCCCceec-CCchhhhHHHHHHHHh-cCCCCCCCCC
Q 002091 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFS-DGNNLCPLTM 307 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~-~~~~~CP~t~ 307 (968)
..|+||||+..|.|||.- .|||+|||.+|.+|+. .+...||++|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 478999999999999995 8999999999999994 4567899965
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=5.4e-06 Score=94.69 Aligned_cols=422 Identities=14% Similarity=0.159 Sum_probs=258.5
Q ss_pred HHHhhccC-hHHHHHHHHHHHH-hccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCC
Q 002091 385 IVRSLGRR-IEERKLAVALLLE-LSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKAN 462 (968)
Q Consensus 385 lv~~L~~~-~~~~~~A~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g 462 (968)
|..+|.+. ...+..|.+-|.. +++..+. ....|..|+-..+.+.+++.-.--.|...+...+|-..+
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---- 108 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---- 108 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence 55555443 3355566655443 3444332 234566777777888888877777777666555554332
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 002091 463 YFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMI 541 (968)
Q Consensus 463 ~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~ 541 (968)
-|..+-+-|+.+++.+|..|..+|..+ |..+..+=.+-++-+...+.++.+|+.|+.|+-+|-+ .++.+.++.
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~ 182 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE 182 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH
Confidence 255677789999999999888888766 2222222233333455667799999999999999986 455555443
Q ss_pred HcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002091 542 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNA 621 (968)
Q Consensus 542 ~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~ 621 (968)
..+-.+|.+.+ +.+...|+.+...+|-.. ..++ .+-...+..++..-+...|-.++..|..
T Consensus 183 -----e~I~~LLaD~s---plVvgsAv~AF~evCPer---------ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~R 243 (968)
T KOG1060|consen 183 -----EVIKKLLADRS---PLVVGSAVMAFEEVCPER---------LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTR 243 (968)
T ss_pred -----HHHHHHhcCCC---CcchhHHHHHHHHhchhH---------HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 34455666665 788888888887777422 1222 2335566777766777788888888888
Q ss_pred hccCC--ChhhHHHHHhhcC--------------------chHHH----HHhhccCChhHHHHHHHHHHHhccCCChhHH
Q 002091 622 LCRSP--SAGNIKTTLTQCS--------------------AIPVL----VQLCEHDNENVRANAVKLFCCLVDDGDEAII 675 (968)
Q Consensus 622 L~~~~--~~~~~~~~i~~~g--------------------~i~~L----v~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 675 (968)
-|+.. +....-......| -+..| -.++.+.++.+..+++.+.+.++ ... +
T Consensus 244 YAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA-P~~-~-- 319 (968)
T KOG1060|consen 244 YARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA-PKN-Q-- 319 (968)
T ss_pred HHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC-CHH-H--
Confidence 77632 1100000000000 12222 23667778999999999999997 211 1
Q ss_pred HHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 002091 676 REHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGAL 754 (968)
Q Consensus 676 ~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL 754 (968)
...++..|+++|.+.. +++.-.+..+..++. .+..- .|.+-.+.-..+ ....++..=+.+|
T Consensus 320 ----~~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~lF--------~P~lKsFfv~ss----Dp~~vk~lKleiL 381 (968)
T KOG1060|consen 320 ----VTKIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTLF--------EPHLKSFFVRSS----DPTQVKILKLEIL 381 (968)
T ss_pred ----HHHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhhh--------hhhhhceEeecC----CHHHHHHHHHHHH
Confidence 2356889999998753 456666666666554 33221 122222222211 2345666667788
Q ss_pred hhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCc
Q 002091 755 RRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGL 834 (968)
Q Consensus 755 ~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~ 834 (968)
.+|+.. ..... +++.+.....+.+..+...+..+|+.++.....
T Consensus 382 s~La~e---sni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s---------------------------- 425 (968)
T KOG1060|consen 382 SNLANE---SNISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS---------------------------- 425 (968)
T ss_pred HHHhhh---ccHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----------------------------
Confidence 888853 22222 245566677777777888888899988854432
Q ss_pred cCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCcHHHHHHHhc-CCChHHHHHH
Q 002091 835 CGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLS-SPSPKLQEKA 911 (968)
Q Consensus 835 c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~L~~ll~-~~~~~v~~~a 911 (968)
+...++..|+.++.+.|..|...+...+..|. ++. .....+..|.+++. ..-+..+...
T Consensus 426 ---------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~---------~h~~ii~~La~lldti~vp~ARA~I 487 (968)
T KOG1060|consen 426 ---------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA---------EHLEILFQLARLLDTILVPAARAGI 487 (968)
T ss_pred ---------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH---------HHHHHHHHHHHHhhhhhhhhhhcee
Confidence 33447899999999999999988999999998 331 11123455555552 2345555555
Q ss_pred HHHHHHH
Q 002091 912 LDSVERI 918 (968)
Q Consensus 912 ~~~L~~l 918 (968)
+|++..+
T Consensus 488 iWLige~ 494 (968)
T KOG1060|consen 488 IWLIGEY 494 (968)
T ss_pred eeeehhh
Confidence 6666544
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.7e-05 Score=90.73 Aligned_cols=294 Identities=17% Similarity=0.235 Sum_probs=217.4
Q ss_pred chHHHHHhhhcC-CHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccccc
Q 002091 504 VLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 582 (968)
Q Consensus 504 ~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 582 (968)
.|+.|++-+.+. -++-|++|+..|..++. .+|..+ .+-|+++|++.|.....+ +++...++.++.++...++..+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~V-ga~Gmk~li~vL~~D~~D-~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEV-GAQGMKPLIQVLQRDYMD-PEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHH-HHcccHHHHHHHhhccCC-HHHHHHHHHHHHHHHhcCcchh
Confidence 467777766554 46779999999999864 344444 345789999999876555 7899999999999998664222
Q ss_pred CC-------CC----ccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHH-hhcCchHHHHHhhcc
Q 002091 583 SS-------QT----PVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTL-TQCSAIPVLVQLCEH 650 (968)
Q Consensus 583 ~~-------~~----~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i-~~~g~i~~Lv~ll~~ 650 (968)
.. +. .-..+...+.|..++..+...+-.+|.+++..|.++.++ .+.++++.+ ..+-+|..|+.++.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~-r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSC-RPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhc-CCHHHHHHHHHCchhHHHHHHHHhh
Confidence 11 11 113455778899999999999999999999999999876 455666664 457789999999998
Q ss_pred CChhHHHHHHHHHHHhccCCChhHHHHhh-ccccHHHHHHHhccCC---CHHHHHHHHHHHhcCCC-CHHhHHHHHHcCC
Q 002091 651 DNENVRANAVKLFCCLVDDGDEAIIREHV-GQKCLETLVTIIQSSH---NEEEIASAMGILSKLPE-VPQFTQWLLDAGA 725 (968)
Q Consensus 651 ~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~---~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~ 725 (968)
.-+.+|..++..|..|+. +.+ .++.++ -..++..|..++.... ..-+...++..|-||.. +..+.....+.+.
T Consensus 178 srE~IRNe~iLlL~eL~k-~n~-~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVK-DNS-SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhchhHHHHHHHHHc-cCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 889999999999999983 333 334433 3478899999997653 22467889999999999 8888888999999
Q ss_pred HHHHHHHhhc---CCC---CCC-chhHHHHHHHHHHhhccCCCCH-----HHHHHHHHcCChHHHHHHhhcC--ChHHHH
Q 002091 726 LPIVLNFLKN---GRQ---NDP-NRFQVVENAVGALRRFTAPTNL-----EWQKRAAEAGVIPKLVQLLEYG--TTLTKE 791 (968)
Q Consensus 726 l~~Lv~lL~~---~~~---~~~-~~~~v~e~a~~aL~~L~~~~~~-----~~~~~~~~~g~i~~Lv~lL~~~--~~~v~~ 791 (968)
++.|.++|.. ++. .|. ....-.-.++.++..+..++++ .+++.+...+++..|..++.+. ..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988875 221 221 2223334566777777776432 2456778889999999998876 348888
Q ss_pred HHHHHHhhhcccC
Q 002091 792 HAATSLARFSKNS 804 (968)
Q Consensus 792 ~Aa~aL~nl~~~s 804 (968)
.+..++++...+.
T Consensus 336 esiitvAevVRgn 348 (970)
T KOG0946|consen 336 ESIITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887543
No 55
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.60 E-value=2.3e-08 Score=72.12 Aligned_cols=38 Identities=42% Similarity=0.844 Sum_probs=33.1
Q ss_pred ccccccCCCCc-eecCCchhhhHHHHHHHHhcCCCCCCCC
Q 002091 268 CPITRDVMVDP-VETSSGQTFERSAIEKWFSDGNNLCPLT 306 (968)
Q Consensus 268 cpi~~~~m~dp-v~~~~g~t~~r~~i~~~~~~~~~~CP~t 306 (968)
||||.+.++|| |+++|||+|++.||++|+.. +..||.+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999987 6799975
No 56
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.60 E-value=1.6e-08 Score=73.36 Aligned_cols=36 Identities=25% Similarity=0.649 Sum_probs=23.3
Q ss_pred ccccccCCCC----ceecCCchhhhHHHHHHHHhcC---CCCCC
Q 002091 268 CPITRDVMVD----PVETSSGQTFERSAIEKWFSDG---NNLCP 304 (968)
Q Consensus 268 cpi~~~~m~d----pv~~~~g~t~~r~~i~~~~~~~---~~~CP 304 (968)
||||++ |.+ |++++|||+||+.||++++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999998743 56787
No 57
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.8e-05 Score=91.15 Aligned_cols=258 Identities=13% Similarity=0.147 Sum_probs=179.4
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHhc-c-CCchhHHHHHhCCchHHHHHHHhcC-CHHHHHHHHHHHHHhc-cCchhhH
Q 002091 423 ILLLVTMASS-DDNQASRDAQELLENL-S-FSDDNVVQMAKANYFKHLLQRLSAG-PESVKMRMATTLAEME-LTDHHKA 497 (968)
Q Consensus 423 i~~Lv~lL~s-~~~~~~~~a~~~L~~L-s-~~~~n~~~i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~-~~~~~~~ 497 (968)
+..|+.-|.. .|+..|..|+.-|+.+ + .+++...-+.-...++.|+.+|+.. +.++...|+++|.+|. .-+....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 4555555554 3787777777766655 3 3333444344456789999999876 6899999999999994 3566667
Q ss_pred HHhhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 498 SLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
.+++.++||.|+.-|. -.-.++-+.++.||-.|+. ..-..+.++|++...+.+|.--+ ...+..|+++-+|+|.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~H~~AiL~AG~l~a~LsylDFFS---i~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--RHPKAILQAGALSAVLSYLDFFS---IHAQRVALAIAANCCK 323 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--hccHHHHhcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 7888999999997554 4567899999999999975 23456789999999888887554 6789999999999997
Q ss_pred CcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccC-CChhhHHHHHhhcCchHHHHHhhccC----
Q 002091 577 STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRS-PSAGNIKTTLTQCSAIPVLVQLCEHD---- 651 (968)
Q Consensus 577 ~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~-~~~~~~~~~i~~~g~i~~Lv~ll~~~---- 651 (968)
.-..-+. -.-.+++|.|..++...+....++++-++..++.. ....+.-+.+...|.+.-..+|+.-.
T Consensus 324 si~sd~f-------~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~L 396 (1051)
T KOG0168|consen 324 SIRSDEF-------HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTIL 396 (1051)
T ss_pred cCCCccc-------hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccc
Confidence 3211111 11235789999999999999999888888887632 22333334444567777777777543
Q ss_pred ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhcc
Q 002091 652 NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS 693 (968)
Q Consensus 652 ~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 693 (968)
+..+....+..|..++ .+.+.........++...|..+|..
T Consensus 397 s~~~~~~vIrmls~ms-S~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 397 SNGTYTGVIRMLSLMS-SGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cccchhHHHHHHHHHc-cCChHHHHHHHHhhHHHHHHHHHhc
Confidence 2344555666777777 5555555555556666666666643
No 58
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.53 E-value=1e-05 Score=86.90 Aligned_cols=323 Identities=16% Similarity=0.180 Sum_probs=219.4
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHhccCCchhHHHHH-------hCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCch
Q 002091 423 ILLLVTMASS-DDNQASRDAQELLENLSFSDDNVVQMA-------KANYFKHLLQRLSAGPESVKMRMATTLAEMELTDH 494 (968)
Q Consensus 423 i~~Lv~lL~s-~~~~~~~~a~~~L~~Ls~~~~n~~~i~-------~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~ 494 (968)
+-.++.+++. ..++........+-.+-..+..+..+. +.....+.+.+|..++.-....+++++..++....
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~ 146 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGN 146 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 4445555542 223333444444444433333333322 22336678889999888888778899988865544
Q ss_pred hhHHHhhcC-chHHHHHhhhc-CCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHH
Q 002091 495 HKASLLEGN-VLGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIM 572 (968)
Q Consensus 495 ~~~~i~~~g-~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~ 572 (968)
.+....+.. ....|-..+++ .+++....|+++|..+...++.|-.++.+.++..++..+.+.. ..-.++.+...+++
T Consensus 147 ~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~-~~~QlQYqsifciW 225 (442)
T KOG2759|consen 147 CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTK-CGFQLQYQSIFCIW 225 (442)
T ss_pred ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccC-cchhHHHHHHHHHH
Confidence 433322211 22334445555 5778899999999999999999999999999999999995322 22678999999999
Q ss_pred HhhcCcccccCCCCccccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCChh----hHHHHHhhcCchHHHHHh
Q 002091 573 HLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAG----NIKTTLTQCSAIPVLVQL 647 (968)
Q Consensus 573 ~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~----~~~~~i~~~g~i~~Lv~l 647 (968)
.|..++...+ .+...+.++.+..+++ +....+..-++.++.|++..+... ++...|..+++.+.+-.+
T Consensus 226 lLtFn~~~ae-------~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L 298 (442)
T KOG2759|consen 226 LLTFNPHAAE-------KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSL 298 (442)
T ss_pred HhhcCHHHHH-------HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence 9997664443 3466788899999887 556678888999999998765332 344566766655554444
Q ss_pred hcc--CChhHHHHHHH-------HHHHhccC---------C-----C--------hhHHHHhhcc--ccHHHHHHHhccC
Q 002091 648 CEH--DNENVRANAVK-------LFCCLVDD---------G-----D--------EAIIREHVGQ--KCLETLVTIIQSS 694 (968)
Q Consensus 648 l~~--~~~~v~~~a~~-------~L~~Ls~~---------~-----~--------~~~~~~~~~~--~~i~~Lv~lL~~~ 694 (968)
-.. .|+++....-. -...|++. | + .++...+-+. ..+..|+.+|+.+
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s 378 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETS 378 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcC
Confidence 433 25555444333 22223210 0 0 0122222222 4788999999998
Q ss_pred CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccC
Q 002091 695 HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 759 (968)
Q Consensus 695 ~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~ 759 (968)
.++.+..-|+.-++.... .|+++..+...||=+.+.++|.+ +++.++.+|+.++..+..
T Consensus 379 ~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh------~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 379 NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH------EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC------CCchHHHHHHHHHHHHHh
Confidence 888888889999999999 99999999999999999999999 788999999999887654
No 59
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=4.3e-05 Score=87.61 Aligned_cols=329 Identities=16% Similarity=0.180 Sum_probs=227.9
Q ss_pred hHHHHHHhhcc--ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc--CCCHHHHHHHHHHHHhccCCch---
Q 002091 381 AVESIVRSLGR--RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS--SDDNQASRDAQELLENLSFSDD--- 453 (968)
Q Consensus 381 ~v~~lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--s~~~~~~~~a~~~L~~Ls~~~~--- 453 (968)
.++.|+..+.+ -.+.++.|+..|..+|+ .+|..++. .++++|+..|. ..|+++...++.++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 44444444433 25789999999998864 67777776 45788888886 4588999999999999975542
Q ss_pred ---h-H----------HHHH-hCCchHHHHHHHhcCCHHHHHHHHHHHHHh-c-cCchhhHHHhh-cCchHHHHHhhhcC
Q 002091 454 ---N-V----------VQMA-KANYFKHLLQRLSAGPESVKMRMATTLAEM-E-LTDHHKASLLE-GNVLGPLLHLVSRG 515 (968)
Q Consensus 454 ---n-~----------~~i~-~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L-~-~~~~~~~~i~~-~g~i~~Lv~lL~~~ 515 (968)
+ + ..+. ..+.|..++..+...+-.+|..+...|.++ + ...+.+..+.. +-+|..|+.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 1 1 1222 467788899999998999999999999998 3 34466665554 89999999999998
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHH-cCChHHHHHHhcccC-CCCcchHHHHHHHHHHhhcCcccccCCCCccccccc
Q 002091 516 DIQMKKVAVKALRNLSSVPQNGLQMIK-EGAVGPLVDLLLHHS-SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLES 593 (968)
Q Consensus 516 ~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~Lv~lL~~~~-~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~ 593 (968)
...+|..++..|..|..+..+.++++. .+++..|..++.... .+..-+.+.|+..|-||...+.... .++..
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ------~~FrE 252 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQ------NFFRE 252 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchh------hHHhc
Confidence 888999999999999977777666665 589999999998643 2224688999999999987654333 47888
Q ss_pred hhHHHHHHHhhc---cCCH--------HHHH--HHHHHHHHhccCCC----hhhHHHHHhhcCchHHHHHhhccCC--hh
Q 002091 594 DKEIFMLFSLIN---LTGP--------NVQQ--RILQTFNALCRSPS----AGNIKTTLTQCSAIPVLVQLCEHDN--EN 654 (968)
Q Consensus 594 ~~~i~~l~~ll~---~~~~--------~~~~--~al~~L~~L~~~~~----~~~~~~~i~~~g~i~~Lv~ll~~~~--~~ 654 (968)
++.|+.+..++. .++. .++. -++.++..+..-+. ....++++..++++..|..++.++. .+
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~d 332 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPAD 332 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHh
Confidence 899999987765 2221 1221 24444444443211 1234568888999999999887763 67
Q ss_pred HHHHHHHHHHHhccCCChhHHHHhhcc----------ccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHH
Q 002091 655 VRANAVKLFCCLVDDGDEAIIREHVGQ----------KCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWL 720 (968)
Q Consensus 655 v~~~a~~~L~~Ls~~~~~~~~~~~~~~----------~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l 720 (968)
++..+..++++.. .+...+...+... ..+-.+..+..+......+.+.+.++..... +.+....+
T Consensus 333 IltesiitvAevV-Rgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~ 408 (970)
T KOG0946|consen 333 ILTESIITVAEVV-RGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKF 408 (970)
T ss_pred HHHHHHHHHHHHH-HhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence 8888888888887 4444443333211 0111222333444566778888888877666 66655444
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.43 E-value=8.9e-06 Score=87.41 Aligned_cols=269 Identities=19% Similarity=0.164 Sum_probs=178.6
Q ss_pred HHHhhcCchHHHHHhhccCCh--hHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcC
Q 002091 633 TTLTQCSAIPVLVQLCEHDNE--NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKL 710 (968)
Q Consensus 633 ~~i~~~g~i~~Lv~ll~~~~~--~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL 710 (968)
+.++..|++..|++++..++. .++..|.++|-.+... +++..+...| ...++.+-+.....+.+...+++|.++
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 456667899999999998864 5699999999888622 3333443333 555555556666788899999999999
Q ss_pred CC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHH
Q 002091 711 PE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLT 789 (968)
Q Consensus 711 ~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 789 (968)
-. +++..+.++++|++..++.-.+. .++.+..+++.+|+|++.++....++.+++..+-..|.-+..+.|.-+
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rR------t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~ 323 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRR------TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELL 323 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeeccc------CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence 99 99999999999999999877777 568899999999999999888889999999999999999988888899
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhh---cCChHHHHhhccCCChhhhHH
Q 002091 790 KEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLE---ANAVRPLVRVLEDPDHGACEA 866 (968)
Q Consensus 790 ~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~---~g~i~~Lv~lL~~~~~~v~~~ 866 (968)
+..||.+++-++.+. .+...+.+++..-. .+.....|.-....+....-.+ -.-++.|+-+|++.--+.+.
T Consensus 324 R~~AClAV~vlat~K-E~E~~VrkS~TlaL----VEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~- 397 (832)
T KOG3678|consen 324 RLHACLAVAVLATNK-EVEREVRKSGTLAL----VEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQC- 397 (832)
T ss_pred HHHHHHHHhhhhhhh-hhhHHHhhccchhh----hhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhh-
Confidence 999999999887431 11111111111000 0000011100000000000011 12466777788755444332
Q ss_pred HHHHHHhhh--cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002091 867 SLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI 918 (968)
Q Consensus 867 al~aL~~L~--~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 918 (968)
..|+.-.+ .-...+...+.+.+-|+|+.|.++.+++|......|..+|.-|
T Consensus 398 -i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 398 -IGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred -hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 22222222 1112234457788999999999999988876666666666544
No 61
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.43 E-value=0.00012 Score=83.34 Aligned_cols=463 Identities=13% Similarity=0.143 Sum_probs=237.2
Q ss_pred hhcCCCHHHHHHHHHHHHhccCC-chhHHHHHhCCchHHHHHHHhcCCHH----HHHHHHHHHHHhcc-CchhhHHHhhc
Q 002091 429 MASSDDNQASRDAQELLENLSFS-DDNVVQMAKANYFKHLLQRLSAGPES----VKMRMATTLAEMEL-TDHHKASLLEG 502 (968)
Q Consensus 429 lL~s~~~~~~~~a~~~L~~Ls~~-~~n~~~i~~~g~v~~Lv~~L~~~~~~----~~~~aa~~L~~L~~-~~~~~~~i~~~ 502 (968)
.|..+...++..++.+|..++.. .+.. -+.++.++..|..|-.. .-..-..++..|.. .+.........
T Consensus 561 gl~De~qkVR~itAlalsalaeaa~Pyg-----ie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTr 635 (1172)
T KOG0213|consen 561 GLKDEQQKVRTITALALSALAEAATPYG-----IEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTR 635 (1172)
T ss_pred hhcccchhhhhHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHH
Confidence 34455667777777777666421 1221 12244455555444111 11111223333321 12222222233
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCC-----CCcchHHHHHHHHHHhhcC
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSS-----SSSSLREETATAIMHLAVS 577 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~-----~~~~~~~~a~~~L~~La~~ 577 (968)
.++-.+++=..++|.+.++-.++++...|....--...+....+|.+......... +...+.+.++.+-..+...
T Consensus 636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~ 715 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD 715 (1172)
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch
Confidence 34555555566788899999999999999877666666777778877665533210 1122333333333332221
Q ss_pred cccccC------CCCccccccchhHHHHHHHhhccC--CHHHHHHHHHHHHHhccCCChhh------HHHHHhhc-----
Q 002091 578 TMYQES------SQTPVTLLESDKEIFMLFSLINLT--GPNVQQRILQTFNALCRSPSAGN------IKTTLTQC----- 638 (968)
Q Consensus 578 ~~~~~~------~~~~~~il~~~~~i~~l~~ll~~~--~~~~~~~al~~L~~L~~~~~~~~------~~~~i~~~----- 638 (968)
+..... ++....-. ..+.+..++..+... +....+..+..+.+--......+ +-.+..+.
T Consensus 716 ~~v~R~v~~lkde~e~yrkm-~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~k 794 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEPEQYRKM-VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVK 794 (1172)
T ss_pred HHHHHHhhhhccccHHHHHH-HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccc
Confidence 100000 00000000 112333333333321 22233332222222111111100 00011111
Q ss_pred ----CchHHHHHhhccCChhHHHHHHHHHHHhcc---CCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCC
Q 002091 639 ----SAIPVLVQLCEHDNENVRANAVKLFCCLVD---DGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP 711 (968)
Q Consensus 639 ----g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~---~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~ 711 (968)
..+..++..|++.++.++..|+.++..++. .+.++. .+-.-| -.|.+.|.. ..+++.-..+++|..+.
T Consensus 795 pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~--~m~~lG--vvLyEylge-eypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 795 PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEK--LMGHLG--VVLYEYLGE-EYPEVLGSILGAIKAIV 869 (1172)
T ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHH--HHHHhh--HHHHHhcCc-ccHHHHHHHHHHHHHHH
Confidence 123445567788889999999888887761 111110 000001 113333333 23445444444443332
Q ss_pred CCHHhHHHH-HHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHH---HHHHHHHcCChHHHHHHhhcCCh
Q 002091 712 EVPQFTQWL-LDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE---WQKRAAEAGVIPKLVQLLEYGTT 787 (968)
Q Consensus 712 ~~~~~~~~l-~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~---~~~~~~~~g~i~~Lv~lL~~~~~ 787 (968)
..-...+.. =-.+.+|.|..+|++ .+..++++++..++.++.. .++ .++.+. +-=.|+++|.+.+.
T Consensus 870 nvigm~km~pPi~dllPrltPILkn------rheKVqen~IdLvg~Iadr-gpE~v~aREWMR---IcfeLlelLkahkK 939 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKN------RHEKVQENCIDLVGTIADR-GPEYVSAREWMR---ICFELLELLKAHKK 939 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhh------hHHHHHHHHHHHHHHHHhc-CcccCCHHHHHH---HHHHHHHHHHHHHH
Confidence 200000000 013578999999998 6789999999999999987 333 223332 12347788888889
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHH
Q 002091 788 LTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEAS 867 (968)
Q Consensus 788 ~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a 867 (968)
++|++|...++.++.- +--..++..|++-|+.++..-|...
T Consensus 940 ~iRRaa~nTfG~Iaka---------------------------------------IGPqdVLatLlnnLkvqeRq~RvcT 980 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKA---------------------------------------IGPQDVLATLLNNLKVQERQNRVCT 980 (1172)
T ss_pred HHHHHHHhhhhHHHHh---------------------------------------cCHHHHHHHHHhcchHHHHHhchhh
Confidence 9999999999998831 1123466777777766665555444
Q ss_pred HHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh-hhHHHhcccCCchhhhhcccCCch
Q 002091 868 LDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP-EFKQKYGKSAQMPLVDLTQRGNSS 946 (968)
Q Consensus 868 l~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~Lv~ll~~~~~~ 946 (968)
..|+.-.+. .+. --..++.|.+=-..++..||.-.+..+.-+|..- +....|--...+-|.+.+-+.|..
T Consensus 981 tvaIaIVaE------~c~---pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~v 1051 (1172)
T KOG0213|consen 981 TVAIAIVAE------TCG---PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLV 1051 (1172)
T ss_pred hhhhhhhhh------hcC---chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHH
Confidence 444444431 100 1123444444445677889999988888887432 233333222345577899999999
Q ss_pred hhHHHHHHHHHHhh
Q 002091 947 MKSLSARVLAHLNV 960 (968)
Q Consensus 947 ~~~~A~~aL~~L~~ 960 (968)
-|+.|..+++||.-
T Consensus 1052 hRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1052 HRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999854
No 62
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=8e-06 Score=86.84 Aligned_cols=186 Identities=20% Similarity=0.167 Sum_probs=153.8
Q ss_pred cCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhhHHHhhcCchHHHH
Q 002091 431 SSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKASLLEGNVLGPLL 509 (968)
Q Consensus 431 ~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~-~~~~~~~i~~~g~i~~Lv 509 (968)
.+.+.+-++.|..-|..+..+-+|-..+...|+..+++..|++++..+|+.|+++|...+. ++.....+.+.|+.+.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3567888889999898888888888889999999999999999999999999999999955 567888899999999999
Q ss_pred HhhhcCC-HHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCc
Q 002091 510 HLVSRGD-IQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTP 587 (968)
Q Consensus 510 ~lL~~~~-~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~ 587 (968)
.++.+++ ..++..|+.|+..|-. ++.....+...++...|...|.+++.+ ..++..++..+..|.........
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~-~~lkrK~~~Ll~~Ll~~~~s~~d---- 247 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTS-VKLKRKALFLLSLLLQEDKSDED---- 247 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHhhhhhhh----
Confidence 9998654 5777999999999995 666778888899999999999986543 78899999999999875443332
Q ss_pred cccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhc
Q 002091 588 VTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALC 623 (968)
Q Consensus 588 ~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~ 623 (968)
+....++...+..+....+.++.+.++.++..+.
T Consensus 248 --~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 248 --IASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred --HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 5566677777777887788888888777766654
No 63
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.38 E-value=7.3e-06 Score=90.22 Aligned_cols=233 Identities=17% Similarity=0.136 Sum_probs=162.5
Q ss_pred ChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccc------hhHHHHHHHhhccCCHHHHHHHHHH
Q 002091 545 AVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLES------DKEIFMLFSLINLTGPNVQQRILQT 618 (968)
Q Consensus 545 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~------~~~i~~l~~ll~~~~~~~~~~al~~ 618 (968)
.+..++.+|..-+. .+++..+.+..+..|......+.. ++.. ......++.++..++..++..++..
T Consensus 56 ~~~~~l~lL~~~~~-~~d~v~yvL~li~dll~~~~~~~~------~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~i 128 (312)
T PF03224_consen 56 YASLFLNLLNKLSS-NDDTVQYVLTLIDDLLSDDPSRVE------LFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFI 128 (312)
T ss_dssp ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHH------HHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-cHHHHHHHHHHHHHHHhcCHHHHH------HHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHH
Confidence 46667777765511 278899999999998876554332 2222 2256778888889999999999999
Q ss_pred HHHhccCCChhhHHHHHhhcCchHHHHHhhcc----CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHh---
Q 002091 619 FNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH----DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTII--- 691 (968)
Q Consensus 619 L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL--- 691 (968)
|..+............ .+.++.++.++.+ ++...+..|+.+|.+|. ..++.+..+.+.++++.|..++
T Consensus 129 Lt~Ll~~~~~~~~~~~---~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL--~~~~~R~~f~~~~~v~~l~~iL~~~ 203 (312)
T PF03224_consen 129 LTSLLSQGPKRSEKLV---KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL--RSKEYRQVFWKSNGVSPLFDILRKQ 203 (312)
T ss_dssp HHHHHTSTTT--HHHH---HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH--TSHHHHHHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHcCCccccchH---HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh--CcchhHHHHHhcCcHHHHHHHHHhh
Confidence 9999865433221101 2356666666654 45667789999999996 5677888888999999999999
Q ss_pred ---ccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHH
Q 002091 692 ---QSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKR 768 (968)
Q Consensus 692 ---~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~ 768 (968)
.+..+.+.+..++-+++-|+.+++....+...+.++.++++++.. ....+..-++.+|.|+...........
T Consensus 204 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~-----~KEKvvRv~la~l~Nl~~~~~~~~~~~ 278 (312)
T PF03224_consen 204 ATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS-----IKEKVVRVSLAILRNLLSKAPKSNIEL 278 (312)
T ss_dssp -------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH-------SHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred cccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc-----ccchHHHHHHHHHHHHHhccHHHHHHH
Confidence 455677889999999999999999999999999999999999984 467889999999999999744448888
Q ss_pred HHHcCChHHHHHHhhc--CChHHHHHHH
Q 002091 769 AAEAGVIPKLVQLLEY--GTTLTKEHAA 794 (968)
Q Consensus 769 ~~~~g~i~~Lv~lL~~--~~~~v~~~Aa 794 (968)
+...|+++.+-.+... +|+++...-.
T Consensus 279 mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 279 MVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 8888888777777664 3777765443
No 64
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.38 E-value=2.2e-07 Score=68.10 Aligned_cols=39 Identities=38% Similarity=0.865 Sum_probs=36.1
Q ss_pred ccccccCCCCce-ecCCchhhhHHHHHHHHh-cCCCCCCCC
Q 002091 268 CPITRDVMVDPV-ETSSGQTFERSAIEKWFS-DGNNLCPLT 306 (968)
Q Consensus 268 cpi~~~~m~dpv-~~~~g~t~~r~~i~~~~~-~~~~~CP~t 306 (968)
||||++.+.+|+ +++|||+|++.||.+|++ .+...||.+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 667889975
No 65
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.34 E-value=1.7e-05 Score=87.33 Aligned_cols=218 Identities=15% Similarity=0.199 Sum_probs=152.0
Q ss_pred CchHHHHHhhhc--CCHHHHHHHHHHHHHhcC-CCccHHHHHH------cCChHHHHHHhcccCCCCcchHHHHHHHHHH
Q 002091 503 NVLGPLLHLVSR--GDIQMKKVAVKALRNLSS-VPQNGLQMIK------EGAVGPLVDLLLHHSSSSSSLREETATAIMH 573 (968)
Q Consensus 503 g~i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~------~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~ 573 (968)
+....++.+|+. .++++.+..+..+..|.. ++.....+.+ .....++++++..++ ..++..|+.+|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D---~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND---SFIQLKAAFILTS 131 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC---HHHHHHHHHHHHH
Confidence 345666666654 578999999999999995 4444544444 125788888777654 7889999999999
Q ss_pred hhcCcccccCCCCccccccchhHHHHHHHhhcc----CCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhh-
Q 002091 574 LAVSTMYQESSQTPVTLLESDKEIFMLFSLINL----TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLC- 648 (968)
Q Consensus 574 La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~----~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll- 648 (968)
|......+.. -...+.++.++..+.+ .+..++..++.+|.+|.+ .++.|..+.+.++++.|..++
T Consensus 132 Ll~~~~~~~~-------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~---~~~~R~~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 132 LLSQGPKRSE-------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR---SKEYRQVFWKSNGVSPLFDILR 201 (312)
T ss_dssp HHTSTTT--H-------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT---SHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHcCCcccc-------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC---cchhHHHHHhcCcHHHHHHHHH
Confidence 9986654432 0013667777777663 445577889999999986 577788888899999999999
Q ss_pred -----cc-CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CH-HhHHHH
Q 002091 649 -----EH-DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VP-QFTQWL 720 (968)
Q Consensus 649 -----~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~-~~~~~l 720 (968)
.+ .+..++..++.++|.|+ -+++....+...+.++.|+++++....+++..-++++|.||.. .. .....+
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~m 279 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELM 279 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred hhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22 24788999999999997 3456667777888999999999999999999999999999999 33 377888
Q ss_pred HHcCCHHHHHHHhhc
Q 002091 721 LDAGALPIVLNFLKN 735 (968)
Q Consensus 721 ~~~g~l~~Lv~lL~~ 735 (968)
+..|+++.+-.+...
T Consensus 280 v~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 280 VLCGLLKTLQNLSER 294 (312)
T ss_dssp HHH-HHHHHHHHHSS
T ss_pred HHccHHHHHHHHhcC
Confidence 888877776666654
No 66
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00026 Score=81.30 Aligned_cols=386 Identities=16% Similarity=0.182 Sum_probs=229.5
Q ss_pred chHHHHHhhhcC--CHHHHHHHHHHHHHhcC-CCccHHHHHHc---C-------ChH-HHHHHhcccCCCCcchHHHHHH
Q 002091 504 VLGPLLHLVSRG--DIQMKKVAVKALRNLSS-VPQNGLQMIKE---G-------AVG-PLVDLLLHHSSSSSSLREETAT 569 (968)
Q Consensus 504 ~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~---g-------~v~-~Lv~lL~~~~~~~~~~~~~a~~ 569 (968)
++..|.+.|.+. ++.+|..|.-.|.|--. .++.++.-... + -|. .+..-|.+.. +.....|..
T Consensus 36 F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~e---p~~~s~Aaq 112 (859)
T KOG1241|consen 36 FLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPE---PRRPSSAAQ 112 (859)
T ss_pred HHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC---CCccchHHH
Confidence 444555555443 45677777777776542 33222221111 0 111 1334444333 556667777
Q ss_pred HHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHH-HHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhh
Q 002091 570 AIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPN-VQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLC 648 (968)
Q Consensus 570 ~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~-~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll 648 (968)
+++.++.-.-.... =.+.+..++..+....+. +++..+.++.-+|.+-+........ +.++..++.-+
T Consensus 113 ~va~IA~~ElP~n~---------wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~s--N~iLtaIv~gm 181 (859)
T KOG1241|consen 113 CVAAIACIELPQNQ---------WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQS--NDILTAIVQGM 181 (859)
T ss_pred HHHHHHHhhCchhh---------CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHH--hHHHHHHHhhc
Confidence 77777753221111 134556666666555554 8889999999999875554322222 23556666655
Q ss_pred cc--CChhHHHHHHHHHHHhccCCChhHHHHhhcccc-HHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcC
Q 002091 649 EH--DNENVRANAVKLFCCLVDDGDEAIIREHVGQKC-LETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAG 724 (968)
Q Consensus 649 ~~--~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~-i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g 724 (968)
+. ++..+|..|..+|.+--+... .+...-.+... ++..++.- .+++.+++.+|+.+|..+.. .-+..+.-+...
T Consensus 182 rk~e~s~~vRLaa~~aL~nsLef~~-~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a 259 (859)
T KOG1241|consen 182 RKEETSAAVRLAALNALYNSLEFTK-ANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQA 259 (859)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHH-HhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 368899999999987541110 00000011122 22222322 23688999999999999988 555555555555
Q ss_pred CHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHH-----HHHHH---------------cCChHHHHHHhhc
Q 002091 725 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ-----KRAAE---------------AGVIPKLVQLLEY 784 (968)
Q Consensus 725 ~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~-----~~~~~---------------~g~i~~Lv~lL~~ 784 (968)
.+..-+.-+++ .++.+.-.++...++++.. ++- ....+ .+++|.|+++|..
T Consensus 260 lfaitl~amks------~~deValQaiEFWsticeE---EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 260 LFAITLAAMKS------DNDEVALQAIEFWSTICEE---EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHcC------CcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 66666777776 6778888888888878753 221 11111 2567888888874
Q ss_pred C-------ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHh---
Q 002091 785 G-------TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVR--- 854 (968)
Q Consensus 785 ~-------~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~--- 854 (968)
. +.....+|..+|.-++. .+....+++.+.
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~----------------------------------------~~~D~Iv~~Vl~Fie 370 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQ----------------------------------------CVGDDIVPHVLPFIE 370 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHH----------------------------------------HhcccchhhhHHHHH
Confidence 1 23577778888877773 122234444443
Q ss_pred -hccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccC-
Q 002091 855 -VLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSA- 932 (968)
Q Consensus 855 -lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~- 932 (968)
-++++|..-+++|..|+..+.++- +..+..=...++++.+++++.+++.-++..+.|.+.+++..-. .......
T Consensus 371 e~i~~pdwr~reaavmAFGSIl~gp--~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~ 446 (859)
T KOG1241|consen 371 ENIQNPDWRNREAAVMAFGSILEGP--EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQEL 446 (859)
T ss_pred HhcCCcchhhhhHHHHHHHhhhcCC--chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhh
Confidence 555788889999999999999332 2334444556789999999999889999999999999975432 1222211
Q ss_pred Cch----hhhhcccCCchhhHHHHHHHHHHh
Q 002091 933 QMP----LVDLTQRGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 933 ~~~----Lv~ll~~~~~~~~~~A~~aL~~L~ 959 (968)
..+ ++.-++ ..+.+-..+.+++-.|-
T Consensus 447 l~~~l~~l~~gL~-DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 447 LQSKLSALLEGLN-DEPRVASNVCWAFISLA 476 (859)
T ss_pred hhHHHHHHHHHhh-hCchHHHHHHHHHHHHH
Confidence 222 333222 34677777777777664
No 67
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.30 E-value=3.1e-07 Score=94.07 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=61.0
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhh
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDR 331 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~ 331 (968)
.-++|-||.+.|+-||++|||||||--||.+++. .++.||.|.-++....|..|.-+.+.|+.+...
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 4589999999999999999999999999999995 478999999999999999999999999988543
No 68
>PF05536 Neurochondrin: Neurochondrin
Probab=98.27 E-value=0.00058 Score=80.20 Aligned_cols=403 Identities=18% Similarity=0.164 Sum_probs=232.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccCCch----hHHHHHhCCchHHHHHHHhcC-------CHHHHHHHHHHHHHhc
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSFSDD----NVVQMAKANYFKHLLQRLSAG-------PESVKMRMATTLAEME 490 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~----n~~~i~~~g~v~~Lv~~L~~~-------~~~~~~~aa~~L~~L~ 490 (968)
.+..-+.+|++.+..-+-.++..+.++....+ ++..+.++=+++.+-++|+++ ....+.-|..+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35556678887776667777777777775433 245577777788888999873 3567788899999998
Q ss_pred cCchhhHHHhhcCchHHHHHhhhcCCH-HHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHH
Q 002091 491 LTDHHKASLLEGNVLGPLLHLVSRGDI-QMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETAT 569 (968)
Q Consensus 491 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~ 569 (968)
.+++....---.+-||.|++.+.+.+. .+...|..+|..++.+++.+..+++.|+++.|++.+.++ +...+.|+.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~----~~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ----SFQMEIALN 161 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC----cchHHHHHH
Confidence 877654322224679999999988776 999999999999999999999999999999999999874 567899999
Q ss_pred HHHHhhcCcccccCCCCccccccch----hHHHHHHHhhccCCHHHHHHHHHHHHHhccCC--------ChhhHHHHHhh
Q 002091 570 AIMHLAVSTMYQESSQTPVTLLESD----KEIFMLFSLINLTGPNVQQRILQTFNALCRSP--------SAGNIKTTLTQ 637 (968)
Q Consensus 570 ~L~~La~~~~~~~~~~~~~~il~~~----~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~--------~~~~~~~~i~~ 637 (968)
+|.++......... -... ..+..+-..+.......+-.++..|..+-... .+..+..
T Consensus 162 lL~~Lls~~~~~~~-------~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~---- 230 (543)
T PF05536_consen 162 LLLNLLSRLGQKSW-------AEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS---- 230 (543)
T ss_pred HHHHHHHhcchhhh-------hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH----
Confidence 99998874321110 0111 12222333333222233334455555554322 1111111
Q ss_pred cCchHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHHhh---ccccHHHHHHHh------------ccCCCH----
Q 002091 638 CSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHV---GQKCLETLVTII------------QSSHNE---- 697 (968)
Q Consensus 638 ~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~---~~~~i~~Lv~lL------------~~~~~~---- 697 (968)
.....|..++++. .+.-|..+..+...|......+....-- .....-.++++. ...+.+
T Consensus 231 -~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~ 309 (543)
T PF05536_consen 231 -DLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPE 309 (543)
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHH
Confidence 1233344555554 5666667766666655221111000000 001111122111 001111
Q ss_pred ---------HHHHHHHHHHhcCCC------CHHhHHHHHH--cCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCC
Q 002091 698 ---------EEIASAMGILSKLPE------VPQFTQWLLD--AGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP 760 (968)
Q Consensus 698 ---------~~~~~Al~~L~nL~~------~~~~~~~l~~--~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~ 760 (968)
.+.+..++.+.+-.. +++....++. .+.+..++++|++.......+..+.-.++++|+.+-+.
T Consensus 310 ~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaE 389 (543)
T PF05536_consen 310 KQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAE 389 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh
Confidence 122223333333111 2222223322 35667777888764332222333667788888888876
Q ss_pred CCHHHHHHHHHcCChHHHHHHhhcCChH----------HHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCccccc
Q 002091 761 TNLEWQKRAAEAGVIPKLVQLLEYGTTL----------TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQV 830 (968)
Q Consensus 761 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~----------v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~ 830 (968)
.....++.+ .|.+|.++.+.+.+... ..+.-.-+|+.++.
T Consensus 390 e~~~lr~~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~---------------------------- 439 (543)
T PF05536_consen 390 ETSALRKEV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA---------------------------- 439 (543)
T ss_pred ChHHHHHHH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc----------------------------
Confidence 333456666 58899999998865332 34444445555542
Q ss_pred CCCccCcccchHHhhcCChHHHHhhcc----C--CChh-------hhHHHHHHHHhhh
Q 002091 831 HGGLCGIESSFCLLEANAVRPLVRVLE----D--PDHG-------ACEASLDALVTLI 875 (968)
Q Consensus 831 h~~~c~~~~~~~l~~~g~i~~Lv~lL~----~--~~~~-------v~~~al~aL~~L~ 875 (968)
..+.+..+...|+.+.|++.|. + .... ....++..|.|+.
T Consensus 440 -----e~~gr~~l~~~~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~ 492 (543)
T PF05536_consen 440 -----EEEGRKILLSNGGWKLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLV 492 (543)
T ss_pred -----cHHHHHHHHhCCcHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHH
Confidence 2334566778888777776442 2 1111 2345677888887
No 69
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.8e-05 Score=81.76 Aligned_cols=185 Identities=15% Similarity=0.135 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHH
Q 002091 608 GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETL 687 (968)
Q Consensus 608 ~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~L 687 (968)
+++-++.++.-|..++..-++ -.-+...|++..++.++++++..+|..|+++|...+ ...+.....+++.++.+.|
T Consensus 96 ~le~ke~ald~Le~lve~iDn---Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~-qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDN---ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAV-QNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhh---HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHcccHHHH
Confidence 455555566666666543222 224556788888888999999999999999999999 7778888889999999999
Q ss_pred HHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHH
Q 002091 688 VTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ 766 (968)
Q Consensus 688 v~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~ 766 (968)
+..|.+..+..++..|+.++++|.. ++.....+...++...|...+.+++ .+..++..++..+..+... .....
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~----~~~~lkrK~~~Ll~~Ll~~-~~s~~ 246 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN----TSVKLKRKALFLLSLLLQE-DKSDE 246 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC----cchHHHHHHHHHHHHHHHh-hhhhh
Confidence 9999988888899999999999999 8888899999999999999999954 5677889999999999986 55555
Q ss_pred HHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 767 KRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 767 ~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
..+...++-..+..+....+.+++..+..++..+.
T Consensus 247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 56666777777777777778889988888876665
No 70
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.24 E-value=0.00018 Score=81.10 Aligned_cols=244 Identities=17% Similarity=0.115 Sum_probs=175.2
Q ss_pred cChHHHHHHhhc-CCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHH
Q 002091 420 QGCILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKAS 498 (968)
Q Consensus 420 ~g~i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~ 498 (968)
..+++.|+..|. .++..+...++.++... . ....+..|+..|...++.++..++.+|..+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ--E--------DALDLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc--C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 357888998884 56677666555554321 1 111378899999998888999999998654
Q ss_pred HhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc
Q 002091 499 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST 578 (968)
Q Consensus 499 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 578 (968)
...++.+.|+.+|++.++.++..++.++... .....+.+..+|.+.+ +.++..|+.+|+.+-.
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d---~~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHED---ALVRAAALRALGELPR-- 176 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCC---HHHHHHHHHHHHhhcc--
Confidence 3456788999999999999999988877762 1234678888898655 8899999999998764
Q ss_pred ccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHH
Q 002091 579 MYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRAN 658 (968)
Q Consensus 579 ~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~ 658 (968)
...++.|...+.+.++.++..+++++..+.. . .++..+..+....+......
T Consensus 177 ---------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---------~A~~~l~~~~~~~g~~~~~~ 228 (410)
T TIGR02270 177 ---------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---------LAWGVCRRFQVLEGGPHRQR 228 (410)
T ss_pred ---------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---------hHHHHHHHHHhccCccHHHH
Confidence 2356777888999999999999999876631 1 34566666444444444444
Q ss_pred HHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCC
Q 002091 659 AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQ 738 (968)
Q Consensus 659 a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~ 738 (968)
+..++... +. ...++.|..+++.. .++..++.+++.+-. ...++.|+..+.+
T Consensus 229 l~~~lal~---~~---------~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~----------p~av~~L~~~l~d--- 280 (410)
T TIGR02270 229 LLVLLAVA---GG---------PDAQAWLRELLQAA---ATRREALRAVGLVGD----------VEAAPWCLEAMRE--- 280 (410)
T ss_pred HHHHHHhC---Cc---------hhHHHHHHHHhcCh---hhHHHHHHHHHHcCC----------cchHHHHHHHhcC---
Confidence 44444433 11 25678888888763 388888988887764 4468888888877
Q ss_pred CCCchhHHHHHHHHHHhhccCC
Q 002091 739 NDPNRFQVVENAVGALRRFTAP 760 (968)
Q Consensus 739 ~~~~~~~v~e~a~~aL~~L~~~ 760 (968)
..++..|..++..++.-
T Consensus 281 -----~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 281 -----PPWARLAGEAFSLITGM 297 (410)
T ss_pred -----cHHHHHHHHHHHHhhCC
Confidence 23889999999999974
No 71
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.8e-06 Score=99.93 Aligned_cols=71 Identities=27% Similarity=0.464 Sum_probs=65.6
Q ss_pred CCCCcccccccccCCCCceecC-CchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhc
Q 002091 261 EPLQSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRN 332 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 332 (968)
++|++|..|+...+|+|||++| +|+|-||+-|++++-. ..+.|.+|++|....++||.++|.-|+.|..+.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999 8999999999999854 579999999999999999999999999997654
No 72
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.2e-07 Score=88.12 Aligned_cols=56 Identities=25% Similarity=0.469 Sum_probs=51.1
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHh--cCCCCCCCCCCcCCCCCCccCH
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS--DGNNLCPLTMTVLDTSILRPNK 319 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~--~~~~~CP~t~~~l~~~~l~pn~ 319 (968)
..|-|-||++.-+|||++.|||-||=.||.+|+. .+...||+|+-.++..+++|=+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 6899999999999999999999999999999986 3456799999999999999965
No 73
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.18 E-value=1.2e-06 Score=67.25 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=40.9
Q ss_pred CcccccccccCCCCceecCCchh-hhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
+++.|+||++-+.++++.+|||. ||..|+.+|+. ....||++++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 36789999999999999999999 99999999997 5779999998875
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.17 E-value=0.00022 Score=80.28 Aligned_cols=152 Identities=13% Similarity=0.027 Sum_probs=108.6
Q ss_pred hHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChh
Q 002091 595 KEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEA 673 (968)
Q Consensus 595 ~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~ 673 (968)
.++..++..+. ..++.++..++.++.... . ..++..|+..+.+.++.++..++.+|..+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~----~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------ 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE----D---------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG------ 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC----C---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC------
Confidence 45666777773 556666665555543211 1 113788889998888889999999888774
Q ss_pred HHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHH
Q 002091 674 IIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGA 753 (968)
Q Consensus 674 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~a 753 (968)
.....+.|+.+|.+ .+..++..++.+++... ....+.+..+|++ .+..++..|+.+
T Consensus 115 ------~~~a~~~L~~~L~~-~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d------~d~~Vra~A~ra 170 (410)
T TIGR02270 115 ------GRQAEPWLEPLLAA-SEPPGRAIGLAALGAHR-----------HDPGPALEAALTH------EDALVRAAALRA 170 (410)
T ss_pred ------chHHHHHHHHHhcC-CChHHHHHHHHHHHhhc-----------cChHHHHHHHhcC------CCHHHHHHHHHH
Confidence 23567788888876 45667777777776622 2345678888887 678899999999
Q ss_pred HhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 754 LRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 754 L~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
|+.+.. ...++.|...+.+.++.||..|++++..+.
T Consensus 171 LG~l~~------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 171 LGELPR------------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred HHhhcc------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 987775 345677888888889999999999987774
No 75
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00099 Score=77.23 Aligned_cols=291 Identities=14% Similarity=0.142 Sum_probs=151.9
Q ss_pred hhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhc-cCchhhHHHhhcCchHH
Q 002091 429 MASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEME-LTDHHKASLLEGNVLGP 507 (968)
Q Consensus 429 lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~-~~~~~~~~i~~~g~i~~ 507 (968)
-|++.+.-+..-|+.+|.+++..+--+. ..+.+.++|+..++.+|..|+-+...+- ..++.- .-.++.
T Consensus 115 DL~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~-----e~f~~~ 183 (866)
T KOG1062|consen 115 DLNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV-----EHFVIA 183 (866)
T ss_pred hccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH-----HHhhHH
Confidence 3556677777778888887765433332 3355667777778888887777766652 222221 124555
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCC
Q 002091 508 LLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQT 586 (968)
Q Consensus 508 Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~ 586 (968)
..++|.+.+..+...++..+..+|. ++++-..+-+ .++-|+..|+ ++....-..+.
T Consensus 184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk------------------~l~~~~yspey--- 240 (866)
T KOG1062|consen 184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILK------------------QLTNSGYSPEY--- 240 (866)
T ss_pred HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHH------------------HHhcCCCCCcc---
Confidence 6667777777777777777777774 3433333322 4444444443 33332221111
Q ss_pred ccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC------ChhHHHHHH
Q 002091 587 PVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD------NENVRANAV 660 (968)
Q Consensus 587 ~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~------~~~v~~~a~ 660 (968)
.++ .-.+|-+|..+++.|.-|.+. ..+..+.|. ..|.+...+. ...+...++
T Consensus 241 dv~---------------gi~dPFLQi~iLrlLriLGq~--d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V 298 (866)
T KOG1062|consen 241 DVH---------------GISDPFLQIRILRLLRILGQN--DADASDLMN-----DILAQVATNTDSSKNAGNAILYECV 298 (866)
T ss_pred Ccc---------------CCCchHHHHHHHHHHHHhcCC--CccHHHHHH-----HHHHHHHhcccccccchhHHHHHHH
Confidence 000 012344444444444444332 111111111 1111222111 122333333
Q ss_pred HHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCC
Q 002091 661 KLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQN 739 (968)
Q Consensus 661 ~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~ 739 (968)
.++..+- ..... ..-++..|-++|.+. +..++.-|+..|..+.. ++...+.- =..+++.|++
T Consensus 299 ~TI~~I~--~~~~L-----rvlainiLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~D---- 361 (866)
T KOG1062|consen 299 RTIMDIR--SNSGL-----RVLAINILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKD---- 361 (866)
T ss_pred HHHHhcc--CCchH-----HHHHHHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcC----
Confidence 3333332 00000 011233333344332 22355555555555555 44333322 1356788999
Q ss_pred CCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 740 DPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 740 ~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
++..++..|...+..|+. ..+...+ +..|+.+|.+.+++.+...+.-+..++.
T Consensus 362 --pD~SIkrralELs~~lvn---~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 362 --PDVSIKRRALELSYALVN---ESNVRVM-----VKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred --CcHHHHHHHHHHHHHHhc---cccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 789999999999999995 3333343 4668899998899999888888877773
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=9.6e-05 Score=85.48 Aligned_cols=329 Identities=16% Similarity=0.124 Sum_probs=197.7
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 500 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~ 500 (968)
+..|..+......|.+.+.-.-..|.|.+...+.... +++..+++=-.+.++..|.-|...+..+-...-.
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~----- 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI----LAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT----- 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----hhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH-----
Confidence 4455666667777777777666677776644443332 2344555555666888888777776555332211
Q ss_pred hcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccc
Q 002091 501 EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 580 (968)
Q Consensus 501 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 580 (968)
.-.+.+|.+.++++++.+++.++....++ +..+.....+.|.++.|-.++.+.+ +.+..+|+++|..|......
T Consensus 120 -ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~---p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 120 -EYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSN---PMVVANALAALSEIHESHPS 193 (734)
T ss_pred -HHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCC---chHHHHHHHHHHHHHHhCCC
Confidence 23568999999999999999999999888 4456667778899999999999655 88999999999999875532
Q ss_pred ccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHH
Q 002091 581 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAV 660 (968)
Q Consensus 581 ~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~ 660 (968)
... .......+..++..++.-+...|.-++.++.+-..... .+.. ..+..+...+.+.+..+...+.
T Consensus 194 ~~~------~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~------~i~~r~~p~Lqh~n~avvlsav 260 (734)
T KOG1061|consen 194 VNL------LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAE------DICERLTPRLQHANSAVVLSAV 260 (734)
T ss_pred CCc------ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHH------HHHHHhhhhhccCCcceEeehH
Confidence 111 22233445556666655566666667776666543322 2221 2456667788888889999999
Q ss_pred HHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCC
Q 002091 661 KLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQN 739 (968)
Q Consensus 661 ~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~ 739 (968)
+++.++...... ....+-....+.|+.++.+.+ +++.-|++=+.-+.. .+..-. . .+..+.-.-.
T Consensus 261 Kv~l~~~~~~~~--~~~~~~~K~~~pl~tlls~~~--e~qyvaLrNi~lil~~~p~~~~----~----~~~~Ff~kyn-- 326 (734)
T KOG1061|consen 261 KVILQLVKYLKQ--VNELLFKKVAPPLVTLLSSES--EIQYVALRNINLILQKRPEILK----V----EIKVFFCKYN-- 326 (734)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhcccceeeecccc--hhhHHHHhhHHHHHHhChHHHH----h----HhHeeeeecC--
Confidence 999888733332 223334456667777776643 455555433222222 111100 0 0000111100
Q ss_pred CCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 740 DPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 740 ~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
....++..=..++..++.. ....+ +++-+...-..-|.+.-++|.+++++++
T Consensus 327 --DPiYvK~eKleil~~la~~--~nl~q------vl~El~eYatevD~~fvrkaIraig~~a 378 (734)
T KOG1061|consen 327 --DPIYVKLEKLEILIELAND--ANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLA 378 (734)
T ss_pred --CchhhHHHHHHHHHHHhhH--hHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhh
Confidence 1234555556666666641 22221 2333444444456677777788887776
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.15 E-value=0.00075 Score=77.02 Aligned_cols=414 Identities=11% Similarity=0.148 Sum_probs=229.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHH----HHHHHHHHHHhccCchhhHH
Q 002091 423 ILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESV----KMRMATTLAEMELTDHHKAS 498 (968)
Q Consensus 423 i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~----~~~aa~~L~~L~~~~~~~~~ 498 (968)
...|..-..++|.+.+.-.++.+..+|..+.--........++.+.......-... -.....+-. +...+
T Consensus 638 mlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv------~ia~K 711 (1172)
T KOG0213|consen 638 MLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTV------EIAAK 711 (1172)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHH------HHHHH
Confidence 33444445677777777777777777654433333334444555544332210000 000001111 11223
Q ss_pred HhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCc--cHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 499 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQ--NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 499 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~--~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
++....|..++.=++++.+..++-.+.+..++...-. .-..-.+.-.++.++..+...+.. ..+.-....+..|=..
T Consensus 712 vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~-d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 712 VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE-DSVMLLGFGTVVNALG 790 (1172)
T ss_pred hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc-hhhhhhhHHHHHHHHh
Confidence 4444556677777888888777777776666653211 111112222445555555544322 2233333333333221
Q ss_pred CcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHH
Q 002091 577 STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVR 656 (968)
Q Consensus 577 ~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~ 656 (968)
...... ....+..++..+++.++.++..++..+..++.--....-.+.+...|. .|.+.+....+++.
T Consensus 791 ~r~kpy----------lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvL 858 (1172)
T KOG0213|consen 791 GRVKPY----------LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVL 858 (1172)
T ss_pred hccccc----------hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHH
Confidence 110000 123456677888999999999999988887632111111123444443 46677777788887
Q ss_pred HHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHH---hHHHHHHcCCHHHHHHH
Q 002091 657 ANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQ---FTQWLLDAGALPIVLNF 732 (968)
Q Consensus 657 ~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~---~~~~l~~~g~l~~Lv~l 732 (968)
-..+.++..+.....-..... --++.+|.|..+|++. ...++.++...++.++. .++ .++++. +---|+++
T Consensus 859 gsILgAikaI~nvigm~km~p-Pi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlel 933 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTP-PIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLEL 933 (1172)
T ss_pred HHHHHHHHHHHHhccccccCC-ChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHH
Confidence 777777776652221000000 1247899999999984 56799999988888877 443 345554 22346778
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCC
Q 002091 733 LKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 812 (968)
Q Consensus 733 L~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~ 812 (968)
|+. ++..+|.+|...++-++.. +.-+.++..|.+-|+..+-..|.-...+++-.+..
T Consensus 934 Lka------hkK~iRRaa~nTfG~Iaka--------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~--------- 990 (1172)
T KOG0213|consen 934 LKA------HKKEIRRAAVNTFGYIAKA--------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET--------- 990 (1172)
T ss_pred HHH------HHHHHHHHHHhhhhHHHHh--------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh---------
Confidence 888 7889999999999988763 22233344444444433222222222233333311
Q ss_pred CCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh--cccccchhhHHHHhc
Q 002091 813 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDA 890 (968)
Q Consensus 813 ~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~ 890 (968)
|.+ ..+++.|++--..++..|+...+.+++-+. .++ -....+..
T Consensus 991 ----------------------c~p--------FtVLPalmneYrtPe~nVQnGVLkalsf~Feyige---mskdYiya- 1036 (1172)
T KOG0213|consen 991 ----------------------CGP--------FTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE---MSKDYIYA- 1036 (1172)
T ss_pred ----------------------cCc--------hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH---HhhhHHHH-
Confidence 111 126788888888888899999999999888 332 12222222
Q ss_pred CcHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002091 891 NAIDRMVRFLSSPSPKLQEKALDSVERI 918 (968)
Q Consensus 891 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l 918 (968)
..+.|.+.|.+.++.-++.|..++..+
T Consensus 1037 -v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1037 -VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred -hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 356667777777777777777777666
No 78
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0002 Score=74.00 Aligned_cols=276 Identities=18% Similarity=0.165 Sum_probs=172.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHH-HcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCC
Q 002091 506 GPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMI-KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESS 584 (968)
Q Consensus 506 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~ 584 (968)
..+++++.+.+|.+++.|..-|.+++.. ..+.-.. +.-.++.+.+++.... + .+.|+.+|.|++....-+..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~---~--~~~a~~alVnlsq~~~l~~~- 78 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLD---P--AEPAATALVNLSQKEELRKK- 78 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcc---c--ccHHHHHHHHHHhhHHHHHH-
Confidence 4678899999999999999999999866 2222211 2345778888887654 2 77899999999986654442
Q ss_pred CCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhh----cCchHHHHHhhccC-Ch-hHHHH
Q 002091 585 QTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQ----CSAIPVLVQLCEHD-NE-NVRAN 658 (968)
Q Consensus 585 ~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~----~g~i~~Lv~ll~~~-~~-~v~~~ 658 (968)
++ +. ++..++.++.+.....-..++..|.||++..+....-..... .|.+.....++..+ +. .--..
T Consensus 79 -----ll-~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 79 -----LL-QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred -----HH-HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 22 22 667777777666556667788889999876443222111111 44455555555544 21 23445
Q ss_pred HHHHHHHhccCCChhHHHHhhcccc--HHHHHHHhccCCCHHH-HHHHHHHHhcCCCCHHhHHHHHHcC--CHHHHHHHh
Q 002091 659 AVKLFCCLVDDGDEAIIREHVGQKC--LETLVTIIQSSHNEEE-IASAMGILSKLPEVPQFTQWLLDAG--ALPIVLNFL 733 (968)
Q Consensus 659 a~~~L~~Ls~~~~~~~~~~~~~~~~--i~~Lv~lL~~~~~~~~-~~~Al~~L~nL~~~~~~~~~l~~~g--~l~~Lv~lL 733 (968)
.+.++.||+. ....+..+..... .+.|+.+-. .+..+ +...+++|.|++.+......++..+ .++.|+-=|
T Consensus 152 lA~vf~nls~--~~~gR~l~~~~k~~p~~kll~ft~--~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPl 227 (353)
T KOG2973|consen 152 LAPVFANLSQ--FEAGRKLLLEPKRFPDQKLLPFTS--EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPL 227 (353)
T ss_pred HHHHHHHHhh--hhhhhhHhcchhhhhHhhhhcccc--cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhc
Confidence 5667888862 3334444544432 223333222 23333 4567889999999777777777632 334433322
Q ss_pred hc--------------------CCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC-ChHHHHH
Q 002091 734 KN--------------------GRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG-TTLTKEH 792 (968)
Q Consensus 734 ~~--------------------~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~ 792 (968)
.+ .+...-++..++...+.+|.-||. ...-|+.+.+.|+.|.+-.+-... +++++..
T Consensus 228 agpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca--T~~GRe~lR~kgvYpilRElhk~e~ded~~~a 305 (353)
T KOG2973|consen 228 AGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA--TRAGREVLRSKGVYPILRELHKWEEDEDIREA 305 (353)
T ss_pred CCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh--hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHH
Confidence 22 112222678899999999999998 788899999999888887776644 5566554
Q ss_pred HHHHHhhhc
Q 002091 793 AATSLARFS 801 (968)
Q Consensus 793 Aa~aL~nl~ 801 (968)
+-....-+.
T Consensus 306 ce~vvq~Lv 314 (353)
T KOG2973|consen 306 CEQVVQMLV 314 (353)
T ss_pred HHHHHHHHH
Confidence 444444343
No 79
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.11 E-value=1.9e-06 Score=87.93 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=40.4
Q ss_pred CcccccccccCCCCc--------eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 264 QSFYCPITRDVMVDP--------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 264 ~~~~cpi~~~~m~dp--------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
++..||||++.+.+| ++.+|||+||+.||.+|+.. +.+||.|+.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 568899999988764 56789999999999999964 679999998775
No 80
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.09 E-value=1.1e-06 Score=68.03 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=32.9
Q ss_pred cccccccccCCCCcee-cCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHH
Q 002091 265 SFYCPITRDVMVDPVE-TSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSI 325 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I 325 (968)
-++|++|.++|++||. ..|.|.||+.||.+.+. ..||+|+.|---.++.-|..|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 4789999999999996 68999999999988763 3599999998888889998887776
No 81
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0016 Score=76.67 Aligned_cols=334 Identities=16% Similarity=0.191 Sum_probs=213.8
Q ss_pred HHHHHHHHHHhccCCchh-HHHH----HhCCchHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHH
Q 002091 437 ASRDAQELLENLSFSDDN-VVQM----AKANYFKHLLQRLSA-GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLH 510 (968)
Q Consensus 437 ~~~~a~~~L~~Ls~~~~n-~~~i----~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 510 (968)
-.+.++.+|.|+-...+. ...+ .--|.++.+...|.. +.+.++..|..++..+..+.+.-..+++.|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 345688899998643332 1111 123667777777754 4678999999999888888888888999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcccc
Q 002091 511 LVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTL 590 (968)
Q Consensus 511 lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~i 590 (968)
+|.+ -|..+..++.+|+.|+++++-.....+.|++..+.+++...+ ++..+..++..|+.|....-.--. ..+.+
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~--~~QqRAqaAeLlaKl~Adkl~GPr--V~ITL 1895 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTN--SDQQRAQAAELLAKLQADKLTGPR--VTITL 1895 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccC--cHHHHHHHHHHHHHhhhccccCCc--eeeeh
Confidence 9975 578899999999999999998888899999999998887654 367888899999999874321111 11111
Q ss_pred ccc--h-------hHHHHHHHhhcc--CCHH------HHHHHHHHHHHhcc--------CC-------------------
Q 002091 591 LES--D-------KEIFMLFSLINL--TGPN------VQQRILQTFNALCR--------SP------------------- 626 (968)
Q Consensus 591 l~~--~-------~~i~~l~~ll~~--~~~~------~~~~al~~L~~L~~--------~~------------------- 626 (968)
+.. + +.....+.++.. .+|+ .+......+..+.. ++
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 110 0 001222333321 1221 22222222222211 00
Q ss_pred ---ChhhHHHHHhhc------------CchHHHHHhhccCCh--hHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHH
Q 002091 627 ---SAGNIKTTLTQC------------SAIPVLVQLCEHDNE--NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVT 689 (968)
Q Consensus 627 ---~~~~~~~~i~~~------------g~i~~Lv~ll~~~~~--~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~ 689 (968)
.+.-+|..+... +.+..+.+++...++ ....-...++..|. ...+.....+-.-|.+|+++.
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~-r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELV-RHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH-HhCcchhhhCCCccchHHHHH
Confidence 011122222221 123334445544332 22222233344443 223333334445589999999
Q ss_pred HhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091 690 IIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 769 (968)
Q Consensus 690 lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~ 769 (968)
.+...++ ..-..|++.|..|+.+.-..+++.....+..++..++.. .+...-|+.+|-++......+.....
T Consensus 2055 Am~~~n~-s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~-------~~~~GLA~EalkR~~~r~~~eLVAQ~ 2126 (2235)
T KOG1789|consen 2055 AMCLQNT-SAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ-------PSLMGLAAEALKRLMKRNTGELVAQM 2126 (2235)
T ss_pred HHHhcCC-cCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc-------chHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8876433 355789999999999999999999988888899888872 33455788888888876566777788
Q ss_pred HHcCChHHHHHHhhc
Q 002091 770 AEAGVIPKLVQLLEY 784 (968)
Q Consensus 770 ~~~g~i~~Lv~lL~~ 784 (968)
.+.|.+|.|..+|..
T Consensus 2127 LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2127 LKCGLVPYLLQLLDS 2141 (2235)
T ss_pred hccCcHHHHHHHhcc
Confidence 899999999999984
No 82
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.08 E-value=2.2e-06 Score=86.05 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=57.2
Q ss_pred cccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHh
Q 002091 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKD 330 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~ 330 (968)
-++|-||.+.++-|++++||||||--||..++. .+.+||.|+.+....-+..+..++..++.+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 478999999999999999999999999999995 47899999998888778887777887777753
No 83
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.0011 Score=78.21 Aligned_cols=139 Identities=17% Similarity=0.148 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhhccCCCCHHHHHHHH----HcCChHHHHHHhhc-CChHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 002091 744 FQVVENAVGALRRFTAPTNLEWQKRAA----EAGVIPKLVQLLEY-GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFW 818 (968)
Q Consensus 744 ~~v~e~a~~aL~~L~~~~~~~~~~~~~----~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~ 818 (968)
..-.+.++.+|.|+... +|+....+. --|.++.+..++.. +++.++.-|...+..+..+.
T Consensus 1739 ~~~v~m~LtAL~Nli~~-nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-------------- 1803 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSA-NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-------------- 1803 (2235)
T ss_pred HHHHHHHHHHHHHHHhh-CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc--------------
Confidence 34567889999999987 787665443 23778888888885 57799999998887776322
Q ss_pred ccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHH
Q 002091 819 CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMV 897 (968)
Q Consensus 819 ~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~ 897 (968)
+-...+++.|.+..|+.+|++ -|..|+.++..|+.|+ .+ +....-.+.||+..|.
T Consensus 1804 -------------------~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~----~i~keA~~hg~l~yil 1859 (2235)
T KOG1789|consen 1804 -------------------ECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNG----QIGKEALEHGGLMYIL 1859 (2235)
T ss_pred -------------------HHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCc----HHHHHHHhcCchhhhh
Confidence 123446788999999999986 5678999999999998 55 5667778899999999
Q ss_pred HHh-cCCChHHHHHHHHHHHHHhcC
Q 002091 898 RFL-SSPSPKLQEKALDSVERIFRL 921 (968)
Q Consensus 898 ~ll-~~~~~~v~~~a~~~L~~l~~~ 921 (968)
.++ .+..+..+..|..++.++..+
T Consensus 1860 ~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1860 SILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHhccCcHHHHHHHHHHHHHhhhc
Confidence 888 566788888999999998654
No 84
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0023 Score=73.32 Aligned_cols=243 Identities=14% Similarity=0.175 Sum_probs=152.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhcc-CCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhhHHHh
Q 002091 423 ILLLVTMASSDDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKASLL 500 (968)
Q Consensus 423 i~~Lv~lL~s~~~~~~~~a~~~L~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~-~~~~~~~i~ 500 (968)
-+-++.+|++..+-++..|+.+|..+. ..++.. ...++.|++-|..+++.++..|..++..|+. ++.+...+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 345788899999999999999998876 333331 1346889999999999999999999999975 55555433
Q ss_pred hcCchHHHHHhhhcC-CHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHh--hc
Q 002091 501 EGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL--AV 576 (968)
Q Consensus 501 ~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L--a~ 576 (968)
-|.+.++|... +-=+...-++..++|+- .|.-. ...+++|.+++.+.. ...+..+++.+.... +.
T Consensus 220 ----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~--AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 220 ----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTV--AMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhH--HHHHHHHHHHHheeehhcc
Confidence 36777777543 33344455666667763 33322 336788999987543 134444444443222 11
Q ss_pred CcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHH
Q 002091 577 STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVR 656 (968)
Q Consensus 577 ~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~ 656 (968)
+..... -...-++..|-.++.+.++.++.-.+-++..+... .+. .+. .--..+++.|.+.|+.+|
T Consensus 289 g~~d~~--------asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt--Hp~---~Vq--a~kdlIlrcL~DkD~SIR 353 (877)
T KOG1059|consen 289 GMSDHS--------ASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT--HPK---AVQ--AHKDLILRCLDDKDESIR 353 (877)
T ss_pred CCCCcH--------HHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh--CHH---HHH--HhHHHHHHHhccCCchhH
Confidence 110100 01112455566677889999999888888888643 111 111 125667889999999999
Q ss_pred HHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHH
Q 002091 657 ANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMG 705 (968)
Q Consensus 657 ~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~ 705 (968)
..|+.+|.-++ +.+++.+ ++..|...+...+....+...+.
T Consensus 354 lrALdLl~gmV---skkNl~e-----IVk~LM~~~~~ae~t~yrdell~ 394 (877)
T KOG1059|consen 354 LRALDLLYGMV---SKKNLME-----IVKTLMKHVEKAEGTNYRDELLT 394 (877)
T ss_pred HHHHHHHHHHh---hhhhHHH-----HHHHHHHHHHhccchhHHHHHHH
Confidence 99999999998 2333333 34455554444333334444343
No 85
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0035 Score=72.91 Aligned_cols=426 Identities=17% Similarity=0.190 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccC-CchhHHHHHhCCchHHHHHHHhc
Q 002091 395 ERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLLQRLSA 473 (968)
Q Consensus 395 ~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~-~~~n~~~i~~~g~v~~Lv~~L~~ 473 (968)
++.-|+..|..++..+..| +..|....++++.++.++.+|+.++..+-. .++-... ++++..++|.+
T Consensus 123 vVglAL~alg~i~s~Emar-------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~e 190 (866)
T KOG1062|consen 123 VVGLALCALGNICSPEMAR-------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCE 190 (866)
T ss_pred ehHHHHHHhhccCCHHHhH-------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhh
Confidence 4556666777665432222 345566778888999999999988887642 2222211 23334444544
Q ss_pred CCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhhhc---------------CCHHHHHHHHHHHHHhcCCCc-c
Q 002091 474 GPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSR---------------GDIQMKKVAVKALRNLSSVPQ-N 536 (968)
Q Consensus 474 ~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~aL~~Ls~~~~-~ 536 (968)
.+.-+-..+...+..++.. ++.-..+-+ .++.||..|+. .+|-++...++.|+-|-.++. .
T Consensus 191 k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da 268 (866)
T KOG1062|consen 191 KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA 268 (866)
T ss_pred cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH
Confidence 4444444444555555322 211111111 34444444431 134455555555555543222 1
Q ss_pred HHHHHHcCChHHHHHHhcccCCC---CcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHH
Q 002091 537 GLQMIKEGAVGPLVDLLLHHSSS---SSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQ 613 (968)
Q Consensus 537 ~~~i~~~g~v~~Lv~lL~~~~~~---~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~ 613 (968)
.+.|- +.|-++....+.. -..+..+++.++..|-..+.-+. -++..+-..+.+.+-.++.
T Consensus 269 Sd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------------lainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 269 SDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------------LAINILGKFLLNRDNNIRY 331 (866)
T ss_pred HHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------------HHHHHHHHHhcCCccceee
Confidence 22221 1122222211000 01122222222222221111110 1222333333344444555
Q ss_pred HHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhcc
Q 002091 614 RILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS 693 (968)
Q Consensus 614 ~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 693 (968)
.++..|..+.... ...++ + ==..+++.+++.|..++..|...+..|. +..+ +. ..+..|+.+|..
T Consensus 332 vaLn~L~r~V~~d-~~avq---r---Hr~tIleCL~DpD~SIkrralELs~~lv-n~~N--v~-----~mv~eLl~fL~~ 396 (866)
T KOG1062|consen 332 VALNMLLRVVQQD-PTAVQ---R---HRSTILECLKDPDVSIKRRALELSYALV-NESN--VR-----VMVKELLEFLES 396 (866)
T ss_pred eehhhHHhhhcCC-cHHHH---H---HHHHHHHHhcCCcHHHHHHHHHHHHHHh-cccc--HH-----HHHHHHHHHHHh
Confidence 5555555554331 11111 1 0234667788889999999999999987 3222 11 346778888887
Q ss_pred CCCHHHHHHHHHHHhcCCC--CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 002091 694 SHNEEEIASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE 771 (968)
Q Consensus 694 ~~~~~~~~~Al~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~ 771 (968)
. +++.+...+.-+..++. .++.+ | .+..+...+... ..-++..+...+..+...+.++.......
T Consensus 397 ~-d~~~k~~~as~I~~laEkfaP~k~-W-----~idtml~Vl~~a------G~~V~~dv~~nll~LIa~~~~e~~~y~~~ 463 (866)
T KOG1062|consen 397 S-DEDFKADIASKIAELAEKFAPDKR-W-----HIDTMLKVLKTA------GDFVNDDVVNNLLRLIANAFQELHEYAVL 463 (866)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCcch-h-----HHHHHHHHHHhc------ccccchhhHHHHHHHHhcCCcchhhHHHH
Confidence 5 77788877777777776 33322 2 244555555551 12333344444444443321111111000
Q ss_pred cCChHHHHH--HhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCCh
Q 002091 772 AGVIPKLVQ--LLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAV 849 (968)
Q Consensus 772 ~g~i~~Lv~--lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i 849 (968)
.....+.. ++....+.+..-|.|+|+....---+ +.| . +.-...-+..++
T Consensus 464 -rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~-------------------~~~-------~-~~p~~vtesdiv 515 (866)
T KOG1062|consen 464 -RLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLD-------------------GAN-------E-EEPIKVTESDIV 515 (866)
T ss_pred -HHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhc-------------------Ccc-------c-cCCCcCCHHHHH
Confidence 00011110 12223445567788888765411000 001 1 011112345678
Q ss_pred HHHHhhccC--CChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHH-HHhcCCChHHHHHHHHHH
Q 002091 850 RPLVRVLED--PDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMV-RFLSSPSPKLQEKALDSV 915 (968)
Q Consensus 850 ~~Lv~lL~~--~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~-~ll~~~~~~v~~~a~~~L 915 (968)
..|.+++.+ .+..++..|+.||..|..... .. ..-++.|+ ....+-+.++|++|.+.=
T Consensus 516 d~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~--s~------~~ri~~lI~~~~~s~~~elQQRa~E~~ 576 (866)
T KOG1062|consen 516 DKLEKVLMSHSSDSTTKGYALTALLKLSSRFH--SS------SERIKQLISSYKSSLDTELQQRAVEYN 576 (866)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhhcc--cc------HHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 888888874 467788999999999981100 00 11122222 223567889999988743
No 86
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.2e-05 Score=87.23 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=65.3
Q ss_pred CCCCCcccccccccCCCCceecC-CchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhcc
Q 002091 260 LEPLQSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (968)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 333 (968)
.++|++|..|+...+|+|||++| +|-|.||+.|..++-. ..++|..+.||.-...+||-.||+-|-.|....+
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 45889999999999999999987 5899999999999854 5699999999999999999999999999976544
No 87
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.9e-06 Score=79.03 Aligned_cols=53 Identities=25% Similarity=0.472 Sum_probs=44.6
Q ss_pred CcccccccccCCC--CceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCcc
Q 002091 264 QSFYCPITRDVMV--DPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (968)
Q Consensus 264 ~~~~cpi~~~~m~--dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~p 317 (968)
.-|.||||++=++ -||-+.|||.||+.||+..++.+ ..||.|+..+++..+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 4599999999887 46668999999999999999764 59999999888776654
No 88
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.98 E-value=6.2e-06 Score=61.66 Aligned_cols=43 Identities=42% Similarity=0.806 Sum_probs=38.6
Q ss_pred cccccccCCCCceecC-CchhhhHHHHHHHHhcCCCCCCCCCCc
Q 002091 267 YCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTV 309 (968)
Q Consensus 267 ~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~~~~~CP~t~~~ 309 (968)
.||||++.+.+|+.+. |||.|++.|+.+|+..+...||.++..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999998877 999999999999998777889999864
No 89
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.003 Score=65.78 Aligned_cols=358 Identities=16% Similarity=0.146 Sum_probs=218.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccC-Cchh----HHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhh
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSF-SDDN----VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHK 496 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~-~~~n----~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~ 496 (968)
..|.|-.-|..+|..++.-++..+..+-. .+.| ...++.+|.++.++..+...+.++-..|...+..++..+..-
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 34555555667788888777777766653 3323 334467899999999998888999999999999999888877
Q ss_pred HHHhhcCchHHH--HHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHH
Q 002091 497 ASLLEGNVLGPL--LHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMH 573 (968)
Q Consensus 497 ~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~ 573 (968)
..|........+ .++.-..+.-++-.....+..+.+ .++.....-..|.+..|..-|.... +.-+..+++.....
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte--DtLVianciElvte 240 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE--DTLVIANCIELVTE 240 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHHH
Confidence 777776554433 334334455566667777777775 6666666677899998888777533 15678888888888
Q ss_pred hhcCcccccCCCCccccccchhHHHHHHHhhccC--CHHHHHHHHHHHHHhccCC-----ChhhHHHHHhhcCchHHHHH
Q 002091 574 LAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT--GPNVQQRILQTFNALCRSP-----SAGNIKTTLTQCSAIPVLVQ 646 (968)
Q Consensus 574 La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~--~~~~~~~al~~L~~L~~~~-----~~~~~~~~i~~~g~i~~Lv~ 646 (968)
|+....+++ .+.++|.|..+...+... +|--.-.++.....+-... ....+..... -++..-++
T Consensus 241 LaeteHgre-------flaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfE 311 (524)
T KOG4413|consen 241 LAETEHGRE-------FLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFE 311 (524)
T ss_pred HHHHhhhhh-------hcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHH
Confidence 887655554 477888999888888744 4433332333333332110 1111111111 13455566
Q ss_pred hhccCChhHHHHHHHHHHHhccCCChhHHHHhhccc--cHHHHHHHhccCCCHHHHHHHHHHHhcCCC----CH-HhH--
Q 002091 647 LCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQK--CLETLVTIIQSSHNEEEIASAMGILSKLPE----VP-QFT-- 717 (968)
Q Consensus 647 ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~--~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~----~~-~~~-- 717 (968)
.+...+++.++.|+.++..|-+... ..+-+...| ..+.++.-.-+.+...-+..++++|.+++. .+ .++
T Consensus 312 miEmnDpdaieaAiDalGilGSnte--GadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDg 389 (524)
T KOG4413|consen 312 MIEMNDPDAIEAAIDALGILGSNTE--GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDG 389 (524)
T ss_pred hhhcCCchHHHHHHHHHHhccCCcc--hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhcccc
Confidence 7788899999999999999963322 222232222 344444333222322345667777777654 11 111
Q ss_pred -------HHHHH----c---CCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHH-HHHHcCChHHHHHHh
Q 002091 718 -------QWLLD----A---GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQK-RAAEAGVIPKLVQLL 782 (968)
Q Consensus 718 -------~~l~~----~---g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~-~~~~~g~i~~Lv~lL 782 (968)
..+.+ . .-+..+...++. +.+.++-.+...+..++. .|=... .+.+.+++...++--
T Consensus 390 kaeerlrclifdaaaqstkldPleLFlgilqQ------pfpEihcAalktfTAiaa--qPWalkeifakeefieiVtDas 461 (524)
T KOG4413|consen 390 KAEERLRCLIFDAAAQSTKLDPLELFLGILQQ------PFPEIHCAALKTFTAIAA--QPWALKEIFAKEEFIEIVTDAS 461 (524)
T ss_pred HHHHHHHHHHHHHHhhccCCChHHHHHHHHcC------CChhhHHHHHHHHHHHHc--CcHHHHHHhcCccceeeecccc
Confidence 11111 1 123334444444 556788888888888887 344443 344667776665544
Q ss_pred hcC---ChHHHHHHHHHHhhh
Q 002091 783 EYG---TTLTKEHAATSLARF 800 (968)
Q Consensus 783 ~~~---~~~v~~~Aa~aL~nl 800 (968)
... ..+.|..++.++++-
T Consensus 462 tEhaKaakdAkYeccKAiaea 482 (524)
T KOG4413|consen 462 TEHAKAAKDAKYECCKAIAEA 482 (524)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 322 235677777777654
No 90
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.001 Score=75.70 Aligned_cols=346 Identities=15% Similarity=0.108 Sum_probs=207.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhh
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE 501 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~ 501 (968)
.+..|..-++.+...+|+....+|..+....+... .....+.+.+++..+.-..+..++..++.+..+.-. ..+.+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i-~~~~~ 172 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI-ESLKE 172 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH-hhhhh
Confidence 35567777778888888888877776642221111 112345677778877777888888888888654322 23445
Q ss_pred cCchHHHHHhhhcCCHH-HHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccc
Q 002091 502 GNVLGPLLHLVSRGDIQ-MKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 580 (968)
Q Consensus 502 ~g~i~~Lv~lL~~~~~~-~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 580 (968)
.+.+..|-+.+++.... -++.+.-+.-..+.+-. ...+.+.++.+-.++.+-.+....++..|..+...+..+-..
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 67888888888765433 23333333333222111 223455666666666554333367888877777776653211
Q ss_pred ccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHH
Q 002091 581 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAV 660 (968)
Q Consensus 581 ~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~ 660 (968)
..-...++.++.-+....-....+++..+..+..+. +.. -......++|.+.+.|.+..++++..+.
T Consensus 250 ----------~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~q--Ls~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 250 ----------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQ--LSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred ----------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHH--HHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 111234455544443334456667777777776542 222 2233356899999999999999999999
Q ss_pred HHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCC
Q 002091 661 KLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQND 740 (968)
Q Consensus 661 ~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~ 740 (968)
.+|..+.+--.+..++ ..++.|++.+..+.. ....++..|+.=..- .-+++-.+..++.+|+.+...
T Consensus 317 ~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~--~~~e~~~~L~~ttFV-----~~V~~psLalmvpiL~R~l~e- 383 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSC--YTPECLDSLGATTFV-----AEVDAPSLALMVPILKRGLAE- 383 (569)
T ss_pred HHHHHHHHhhccHHHH-----HHHHHHHHHhcCccc--chHHHHHhhcceeee-----eeecchhHHHHHHHHHHHHhh-
Confidence 9999998444444333 346778888876541 112334444332220 001223455556666553322
Q ss_pred CchhHHHHHHHHHHhhccCCC-CHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 741 PNRFQVVENAVGALRRFTAPT-NLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 741 ~~~~~v~e~a~~aL~~L~~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
.+..++..++.++.|++... ++.....+. ..++|.|-..+.+..|++|..++.+|+.+..
T Consensus 384 -Rst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 384 -RSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred -ccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 34567799999999999863 343333322 3456777777777789999999999988864
No 91
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.92 E-value=0.0015 Score=73.29 Aligned_cols=257 Identities=16% Similarity=0.194 Sum_probs=155.8
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHH----HHhccCCCHHHHHHHHHHHhcCCCCHH
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLV----TIIQSSHNEEEIASAMGILSKLPEVPQ 715 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv----~lL~~~~~~~~~~~Al~~L~nL~~~~~ 715 (968)
.+..++.+|++..+.++..|+.+...|+. ......+..-+..|- +-|.. ..+++.-..+.++..+.....
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~-----vlk~c~e~~~l~klg~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAK-----VLKACGETKELAKLGNILYENLGE-DYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHH-----HHHhcchHHHHHHHhHHHHHhcCc-ccHHHHHHHHHHHHHHhhhhc
Confidence 46677888999999999999988777751 111111111222222 22322 244555555555544433111
Q ss_pred hHHH-HHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHH---HHHHHHHcCChHHHHHHhhcCChHHHH
Q 002091 716 FTQW-LLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE---WQKRAAEAGVIPKLVQLLEYGTTLTKE 791 (968)
Q Consensus 716 ~~~~-l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~---~~~~~~~~g~i~~Lv~lL~~~~~~v~~ 791 (968)
.+.. -=-.|.+|.|..+|++ .+..+.++.+..++.++.. .++ .++.+. +-=.|++.|.+.+.++++
T Consensus 679 ~~~mqpPi~~ilP~ltPILrn------kh~Kv~~nti~lvg~I~~~-~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR 748 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRN------KHQKVVANTIALVGTICMN-SPEYIGVREWMR---ICFELVDSLKSWNKEIRR 748 (975)
T ss_pred ccccCCchhhccccccHhhhh------hhHHHhhhHHHHHHHHHhc-CcccCCHHHHHH---HHHHHHHHHHHhhHHHHH
Confidence 1100 0024788999999998 6788999999999999987 343 223322 123478888888999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHH
Q 002091 792 HAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDAL 871 (968)
Q Consensus 792 ~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL 871 (968)
.|...++.++.- +--..++..|++-|+.++...|.....|+
T Consensus 749 ~A~~tfG~Is~a---------------------------------------iGPqdvL~~LlnnLkvqeRq~RvctsvaI 789 (975)
T COG5181 749 NATETFGCISRA---------------------------------------IGPQDVLDILLNNLKVQERQQRVCTSVAI 789 (975)
T ss_pred hhhhhhhhHHhh---------------------------------------cCHHHHHHHHHhcchHHHHHhhhhhhhhh
Confidence 999999988731 11234667777777766666555444455
Q ss_pred HhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh-hhHHHhcccCCchhhhhcccCCchhhHH
Q 002091 872 VTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP-EFKQKYGKSAQMPLVDLTQRGNSSMKSL 950 (968)
Q Consensus 872 ~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~Lv~ll~~~~~~~~~~ 950 (968)
.-.+ +.+ .--..++.|..=-..++..||.-.+.+++-+|..- +....|--.-.+-|-+.+.+.|+.-|+.
T Consensus 790 ~iVa------e~c---gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqt 860 (975)
T COG5181 790 SIVA------EYC---GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQT 860 (975)
T ss_pred hhhH------hhc---CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHH
Confidence 4444 110 01122343333335677788988888888777432 1222221112344667899999999999
Q ss_pred HHHHHHHHhh
Q 002091 951 SARVLAHLNV 960 (968)
Q Consensus 951 A~~aL~~L~~ 960 (968)
|...++||.-
T Consensus 861 a~nvI~Hl~L 870 (975)
T COG5181 861 AMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHhc
Confidence 9999999853
No 92
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.92 E-value=0.0062 Score=71.81 Aligned_cols=227 Identities=16% Similarity=0.205 Sum_probs=121.3
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhcc-CCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHh-ccCchhhH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEM-ELTDHHKA 497 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L-~~~~~~~~ 497 (968)
...+..|+++|+..+.++|..|+++|.-|+ +-.+.+.. ..++.|..-+-+|....|..+.-.|... +..+..-.
T Consensus 46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc
Confidence 356778999999999999999999999886 22222211 1133344444444455554444333332 22221111
Q ss_pred HHhhcCchHHHHHhhhcC------CHHHHHHHHHHHHHhcCCCcc-HHHHHHcCChHHHHHHhcccCCCCcchHHHHHHH
Q 002091 498 SLLEGNVLGPLLHLVSRG------DIQMKKVAVKALRNLSSVPQN-GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATA 570 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~Ls~~~~~-~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~ 570 (968)
......+.+.+...+... ...++-.++..+..+-+.-.. -.. ...+....++--+.... ..++..++.+
T Consensus 122 ~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R---~aVrKkai~~ 197 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPR---LAVRKKAITA 197 (1233)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChH---HHHHHHHHHH
Confidence 122233444444444322 233565666555544321100 000 12233334444444443 6688999999
Q ss_pred HHHhhcCcccccCCCCccccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhh-
Q 002091 571 IMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLC- 648 (968)
Q Consensus 571 L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll- 648 (968)
|+.++....... -.+.+..++.-+. .+.+....-.+.+|..+|+.... ..-... ...+|.+.+++
T Consensus 198 l~~la~~~~~~l----------y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~-r~~~h~--~~ivp~v~~y~~ 264 (1233)
T KOG1824|consen 198 LGHLASSCNRDL----------YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH-RFGSHL--DKIVPLVADYCN 264 (1233)
T ss_pred HHHHHHhcCHHH----------HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc-hhhccc--chhhHHHHHHhc
Confidence 999987432111 1234444444333 44444444556667777654221 111111 24688899999
Q ss_pred --ccCChhHHHHHHHHHHHhc
Q 002091 649 --EHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 649 --~~~~~~v~~~a~~~L~~Ls 667 (968)
+.+++++++.++.++-.+.
T Consensus 265 ~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 265 KIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred ccccCcHHHHHHHHHHHHHHH
Confidence 6778999999999888877
No 93
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.92 E-value=1.1e-05 Score=58.10 Aligned_cols=39 Identities=49% Similarity=0.988 Sum_probs=35.8
Q ss_pred ccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCC
Q 002091 268 CPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLT 306 (968)
Q Consensus 268 cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t 306 (968)
||||++...+|++++|||.|+..|+.+|+..+...||.+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789975
No 94
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=7.4e-06 Score=92.05 Aligned_cols=67 Identities=25% Similarity=0.492 Sum_probs=58.7
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhcc
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 333 (968)
+++.||||++.+++|++++|||+|||.||..|+. +...||.|+. ... .+.+|..+...++.....+.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999987 6788999996 322 77799999999999876653
No 95
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.91 E-value=3.9e-06 Score=62.39 Aligned_cols=40 Identities=35% Similarity=0.749 Sum_probs=33.7
Q ss_pred cccccccCCC---CceecCCchhhhHHHHHHHHhcCCCCCCCCC
Q 002091 267 YCPITRDVMV---DPVETSSGQTFERSAIEKWFSDGNNLCPLTM 307 (968)
Q Consensus 267 ~cpi~~~~m~---dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~ 307 (968)
.||||++-|. .++.++|||.|.+.||.+|+.. +.+||.++
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 6777899999999999999976 46999984
No 96
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.0019 Score=73.57 Aligned_cols=334 Identities=17% Similarity=0.156 Sum_probs=194.0
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCC
Q 002091 547 GPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP 626 (968)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~ 626 (968)
..+++-+..++ +.+++....+|.-+...... .........+..+++.+.-.-+..+.+.+..+..+.
T Consensus 99 ~~~~~~~~tps---~~~q~~~~~~l~~~~~~~~~----------~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 99 EILLEELDTPS---KSVQRAVSTCLPPLVVLSKG----------LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred HHHHHhcCCCc---HHHHHHHHHHhhhHHHHhhc----------cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc
Confidence 34444444443 56666666666665543222 122345566677777667777777888887776542
Q ss_pred ChhhHHHHHhhcCchHHHHHhhccCChhHHH-HHHHHHHHhc-cCCChhHHHHhhccccHHHHHHHhccC--CCHHHHHH
Q 002091 627 SAGNIKTTLTQCSAIPVLVQLCEHDNENVRA-NAVKLFCCLV-DDGDEAIIREHVGQKCLETLVTIIQSS--HNEEEIAS 702 (968)
Q Consensus 627 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~-~a~~~L~~Ls-~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~~ 702 (968)
. -..+.+.+.+..|.....+....... .+..+..... .-+ ...+...++.+-.+|.+. ....++.+
T Consensus 166 ~----i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg------~~~EPyiv~~lp~il~~~~d~~~~Vr~A 235 (569)
T KOG1242|consen 166 G----IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG------PPFEPYIVPILPSILTNFGDKINKVREA 235 (569)
T ss_pred H----HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC------CCCCchHHhhHHHHHHHhhccchhhhHH
Confidence 1 22445567788888888776543333 2222222211 111 123556666666666554 24567777
Q ss_pred HHHHHhcCCC--CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHH
Q 002091 703 AMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQ 780 (968)
Q Consensus 703 Al~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~ 780 (968)
|..+...+.. ++...+.+ ++.++.-+.. ..+..+..++..|+.+..+ ...+-...-..++|.+.+
T Consensus 236 a~~a~kai~~~~~~~aVK~l-----lpsll~~l~~------~kWrtK~aslellg~m~~~--ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 236 AVEAAKAIMRCLSAYAVKLL-----LPSLLGSLLE------AKWRTKMASLELLGAMADC--APKQLSLCLPDLIPVLSE 302 (569)
T ss_pred HHHHHHHHHHhcCcchhhHh-----hhhhHHHHHH------HhhhhHHHHHHHHHHHHHh--chHHHHHHHhHhhHHHHH
Confidence 6665554433 33222222 3444444444 2455688999999998886 333445566789999999
Q ss_pred HhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCC
Q 002091 781 LLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD 860 (968)
Q Consensus 781 lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~ 860 (968)
.|.+..+++|+.+-.+|-+++.-..+ . .+. -.++.|++.+.+++
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN---------------------------------~-dI~--~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDN---------------------------------P-DIQ--KIIPTLLDALADPS 346 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhcc---------------------------------H-HHH--HHHHHHHHHhcCcc
Confidence 99999999999999999999732211 0 011 14666777777766
Q ss_pred hhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHH----hcCCChHHHHHHHHHHHHHhcC---hhhHHHhcccCC
Q 002091 861 HGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRF----LSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQ 933 (968)
Q Consensus 861 ~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~l----l~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~ 933 (968)
..+.+ ++..|..=. ... .++.-.+..++.+ +...+...++.++.++.|+... +.....|-..-.
T Consensus 347 ~~~~e-~~~~L~~tt-------FV~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Ll 417 (569)
T KOG1242|consen 347 CYTPE-CLDSLGATT-------FVA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLL 417 (569)
T ss_pred cchHH-HHHhhccee-------eee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHh
Confidence 55443 223332221 000 1122334444444 4556778889999999988643 323333433334
Q ss_pred chhhhhcccCCchhhHHHHHHHH-HHhhc
Q 002091 934 MPLVDLTQRGNSSMKSLSARVLA-HLNVL 961 (968)
Q Consensus 934 ~~Lv~ll~~~~~~~~~~A~~aL~-~L~~~ 961 (968)
+.|-..+.+-.|++|..|+++|. .+.++
T Consensus 418 p~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 418 PGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred hHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 45666666678999999999994 44443
No 97
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.013 Score=65.46 Aligned_cols=384 Identities=15% Similarity=0.138 Sum_probs=211.9
Q ss_pred hccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc--CCCHHHHHHHHHHHHhcc-CCchh-HHHHHh--CC
Q 002091 389 LGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS--SDDNQASRDAQELLENLS-FSDDN-VVQMAK--AN 462 (968)
Q Consensus 389 L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--s~~~~~~~~a~~~L~~Ls-~~~~n-~~~i~~--~g 462 (968)
|++++..+..|=.-|.+++..+ +-. .+..|+..|- ...+..|..|.-+|+|-- ..++- +..... .|
T Consensus 15 LspD~n~rl~aE~ql~~l~~~d-F~q-------f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~ 86 (858)
T COG5215 15 LSPDPNARLRAEAQLLELQSGD-FEQ-------FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLG 86 (858)
T ss_pred CCCCCCccccHHHHHHHhcccc-HHH-------HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc
Confidence 5566666666656666665421 111 2333444442 234566777777777753 22222 111111 11
Q ss_pred -------chHH-HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCC-HHHHHHHHHHHHHhcCC
Q 002091 463 -------YFKH-LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGD-IQMKKVAVKALRNLSSV 533 (968)
Q Consensus 463 -------~v~~-Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~ 533 (968)
.++. ....|++..+..-..|+..+..++.-+-... .-+|.+..++.....+. ..++..++.++++.|..
T Consensus 87 ~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~--~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces 164 (858)
T COG5215 87 MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNS--LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES 164 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccc--cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence 1111 2334566656666666666666543210000 01355555565555554 47899999999999964
Q ss_pred CccHHHHHHcCC-hHHHH-HHhcccCCCCcchHHHHHHHHHH-hhc--CcccccCCCCccccccchhHHHHHHHhhccCC
Q 002091 534 PQNGLQMIKEGA-VGPLV-DLLLHHSSSSSSLREETATAIMH-LAV--STMYQESSQTPVTLLESDKEIFMLFSLINLTG 608 (968)
Q Consensus 534 ~~~~~~i~~~g~-v~~Lv-~lL~~~~~~~~~~~~~a~~~L~~-La~--~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~ 608 (968)
......+...+. +-.++ .-++..+ ...++-.++.+|.+ +.. ..-+.+. ....+.+...+.-+..+
T Consensus 165 ~~Pe~li~~sN~il~aiv~ga~k~et--~~avRLaaL~aL~dsl~fv~~nf~~E~--------erNy~mqvvceatq~~d 234 (858)
T COG5215 165 EAPEDLIQMSNVILFAIVMGALKNET--TSAVRLAALKALMDSLMFVQGNFCYEE--------ERNYFMQVVCEATQGND 234 (858)
T ss_pred cCHHHHHHHhhHHHHHHHHhhcccCc--hHHHHHHHHHHHHHHHHHHHHhhcchh--------hhchhheeeehhccCCc
Confidence 433333333332 33333 2333333 25677778888877 321 1111111 11123334445556778
Q ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhH--HHHh--------
Q 002091 609 PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI--IREH-------- 678 (968)
Q Consensus 609 ~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~--~~~~-------- 678 (968)
.+++..+.++|..+..- .-+-++ ...+........+.+++.++++...|+.....++....+.. .+.+
T Consensus 235 ~e~q~aafgCl~kim~L-yY~fm~-~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~ 312 (858)
T COG5215 235 EELQHAAFGCLNKIMML-YYKFMQ-SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNH 312 (858)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhc
Confidence 89999999999888632 111222 22333344555677889999999999987777762211110 0000
Q ss_pred -----hccccHHHHHHHhccC------CCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHH
Q 002091 679 -----VGQKCLETLVTIIQSS------HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVV 747 (968)
Q Consensus 679 -----~~~~~i~~Lv~lL~~~------~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~ 747 (968)
.-+.++|.|+.+|... ++..+..+|..+|--.+. +.....+.+++.++.....+ ++..-+
T Consensus 313 ~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq-------~~gd~i~~pVl~FvEqni~~--~~w~nr 383 (858)
T COG5215 313 GFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ-------LKGDKIMRPVLGFVEQNIRS--ESWANR 383 (858)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH-------HhhhHhHHHHHHHHHHhccC--chhhhH
Confidence 1234788899998652 233444555555543332 11112334445555442211 566779
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccC
Q 002091 748 ENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 748 e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s 804 (968)
+.++.+++.+-.+.+...+..+ -+.++|.+...+.+..--++..++|+++.++.+-
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 9999999999987555555444 3567999999998777799999999999998543
No 98
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.86 E-value=0.00012 Score=66.20 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=99.4
Q ss_pred CchHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHH
Q 002091 462 NYFKHLLQRLSA-GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQM 540 (968)
Q Consensus 462 g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 540 (968)
+.+..||.-... .+.+.++...+-|.|.+.++-+-..+.+.+++..++.-|..++...++.+.+.|+|+|.++.|...+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 445666655543 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc
Q 002091 541 IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST 578 (968)
Q Consensus 541 ~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 578 (968)
.+++++|.++..+.++. ..+.-.++..|..|+..+
T Consensus 96 ~ea~g~plii~~lssp~---e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPP---EITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHhcCCceEEeecCCCh---HHHHHHHHHHHHHhcCcc
Confidence 99999999999998765 667778888888887654
No 99
>PF05536 Neurochondrin: Neurochondrin
Probab=97.86 E-value=0.0021 Score=75.64 Aligned_cols=386 Identities=14% Similarity=0.126 Sum_probs=227.4
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHHhccCch----hhHHHhhcCchHHHHHhhhcC-------CHHHHHHHHHHHHHhc
Q 002091 463 YFKHLLQRLSAGPESVKMRMATTLAEMELTDH----HKASLLEGNVLGPLLHLVSRG-------DIQMKKVAVKALRNLS 531 (968)
Q Consensus 463 ~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~Ls 531 (968)
.++..+.+|+..+.+-|-.+...+.++...++ .+..+.+.=+.+.|-++|+++ ....+.-|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35667888988887777777777777754332 344577766678888999873 3567888999999999
Q ss_pred CCCccH--HHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCH
Q 002091 532 SVPQNG--LQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGP 609 (968)
Q Consensus 532 ~~~~~~--~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~ 609 (968)
..++.. ..++. -||.|++.+...+. ..+...|+.+|..++.+++++.. +...|+++.+...+.+ ++
T Consensus 86 ~~~~~a~~~~~~~--~IP~Lle~l~~~s~--~~~v~dalqcL~~Ias~~~G~~a-------Ll~~g~v~~L~ei~~~-~~ 153 (543)
T PF05536_consen 86 RDPELASSPQMVS--RIPLLLEILSSSSD--LETVDDALQCLLAIASSPEGAKA-------LLESGAVPALCEIIPN-QS 153 (543)
T ss_pred CChhhhcCHHHHH--HHHHHHHHHHcCCc--hhHHHHHHHHHHHHHcCcHhHHH-------HHhcCCHHHHHHHHHh-Cc
Confidence 876543 44444 69999999987762 38899999999999998887764 6667899999988876 67
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHhh-cCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHh----hccccH
Q 002091 610 NVQQRILQTFNALCRSPSAGNIKTTLTQ-CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREH----VGQKCL 684 (968)
Q Consensus 610 ~~~~~al~~L~~L~~~~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~----~~~~~i 684 (968)
...+.++.+|.+++.......+...-.. ...++.|...........+..++..|..+-...+....... .-....
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLR 233 (543)
T ss_pred chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHH
Confidence 7788899999998764332111110000 12344555555555666777788888887633210000111 112345
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcC------CHHHHHHHhhc------------CCCCCC-c---
Q 002091 685 ETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAG------ALPIVLNFLKN------------GRQNDP-N--- 742 (968)
Q Consensus 685 ~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g------~l~~Lv~lL~~------------~~~~~~-~--- 742 (968)
..+..+|++.-....+..++.+.++|..- ...+++.... ++-.++++..- .+.... .
T Consensus 234 ~gl~~iL~sr~~~~~R~~al~Laa~Ll~~-~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~ 312 (543)
T PF05536_consen 234 KGLRDILQSRLTPSQRDPALNLAASLLDL-LGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQR 312 (543)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHH
Confidence 55666777776666777776655554331 1111111110 11222222110 000000 0
Q ss_pred ----hhHHHHHHHHHHhhccCC----CCHHHHHHHHH--cCChHHHHHHhhcC------ChHHHHHHHHHHhhhcccCCC
Q 002091 743 ----RFQVVENAVGALRRFTAP----TNLEWQKRAAE--AGVIPKLVQLLEYG------TTLTKEHAATSLARFSKNSLG 806 (968)
Q Consensus 743 ----~~~v~e~a~~aL~~L~~~----~~~~~~~~~~~--~g~i~~Lv~lL~~~------~~~v~~~Aa~aL~nl~~~s~~ 806 (968)
--.+.|..++.+.+-... .+++....+.. .+.+...+.+|++- ++..-.++..+|+..-...
T Consensus 313 ~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe-- 390 (543)
T PF05536_consen 313 LLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEE-- 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhC--
Confidence 012444555555542221 12332222222 24566667777642 1223344555555443211
Q ss_pred CCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhh--cCChHHHHhhccCCC----------hhhhHHHHHHHHhh
Q 002091 807 LSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLE--ANAVRPLVRVLEDPD----------HGACEASLDALVTL 874 (968)
Q Consensus 807 l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~--~g~i~~Lv~lL~~~~----------~~v~~~al~aL~~L 874 (968)
..++.+ .|.++.++.+..... ...+.--+-||+.+
T Consensus 391 ---------------------------------~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~l 437 (543)
T PF05536_consen 391 ---------------------------------TSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHL 437 (543)
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhh
Confidence 111221 367888888886432 23667788889998
Q ss_pred h-cccccchhhHHHHhcCcHHHHHHHh
Q 002091 875 I-EGERLQNGSKVLEDANAIDRMVRFL 900 (968)
Q Consensus 875 ~-~~~~~~~~~~~i~~~~~i~~L~~ll 900 (968)
+ .. .+++.+...||.+.+.+.+
T Consensus 438 t~e~----~gr~~l~~~~g~~~l~~~l 460 (543)
T PF05536_consen 438 TAEE----EGRKILLSNGGWKLLCDDL 460 (543)
T ss_pred hccH----HHHHHHHhCCcHHHHHHHH
Confidence 8 43 7899999999998888766
No 100
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.85 E-value=0.0004 Score=75.07 Aligned_cols=250 Identities=19% Similarity=0.174 Sum_probs=166.6
Q ss_pred hhHHHHhhhccChHHHHHHhhcCCCHHH--HHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhc-CCHHHHHHHHHHH
Q 002091 410 NTLRDQIGDVQGCILLLVTMASSDDNQA--SRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSA-GPESVKMRMATTL 486 (968)
Q Consensus 410 ~~~~~~i~~~~g~i~~Lv~lL~s~~~~~--~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L 486 (968)
...++.|.. .|.+..|+.++.+++.+. +..|.+.|..+. ..+|+..++..| +..++.+-+. ..++.....+.+|
T Consensus 170 q~LCD~iR~-~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il 246 (832)
T KOG3678|consen 170 QGLCDAIRL-DGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGIL 246 (832)
T ss_pred HhhhhHhhc-cchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHH
Confidence 345677777 799999999998876554 778888887663 456777777766 4444444333 3578888899999
Q ss_pred HHhc-cCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC--CCccHHHHHHcCChHHHHHHhcccCCCCcch
Q 002091 487 AEME-LTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS--VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSL 563 (968)
Q Consensus 487 ~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~--~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 563 (968)
.+|. .+++.+..++..|++..++-..+..+|.+...++.+|.|++. ....+.+|++..+-+.|.-+-.+.+ +-+
T Consensus 247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skD---el~ 323 (832)
T KOG3678|consen 247 EHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKD---ELL 323 (832)
T ss_pred HHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchH---HHH
Confidence 9995 456788889999999999999999999999999999999995 4567888999888888877766554 567
Q ss_pred HHHHHHHHHHhhcCcccccC---------CCCccccc---------------cchhHHHHHHHhhccCCHHHHHHHHHHH
Q 002091 564 REETATAIMHLAVSTMYQES---------SQTPVTLL---------------ESDKEIFMLFSLINLTGPNVQQRILQTF 619 (968)
Q Consensus 564 ~~~a~~~L~~La~~~~~~~~---------~~~~~~il---------------~~~~~i~~l~~ll~~~~~~~~~~al~~L 619 (968)
+.+|.-+.+-|+...+.-.. +...+..+ ...+-+..|+-++.+...+.|.....-|
T Consensus 324 R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 324 RLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred HHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 77787777777764321111 00001111 1223345555555544333333222211
Q ss_pred HHhc--cCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 620 NALC--RSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 620 ~~L~--~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
..=+ .+..++ -+++.+-|+|+.|-++..+++.....-|-.+|..+-
T Consensus 404 ~~EAaIKs~Q~K--~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 404 CAEAAIKSLQGK--TKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHhccc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 1111 111111 245677889999999998888777777777777775
No 101
>PHA02926 zinc finger-like protein; Provisional
Probab=97.84 E-value=1.2e-05 Score=78.66 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=41.5
Q ss_pred CCcccccccccCCCC---------ceecCCchhhhHHHHHHHHhcC-----CCCCCCCCCcCCCC
Q 002091 263 LQSFYCPITRDVMVD---------PVETSSGQTFERSAIEKWFSDG-----NNLCPLTMTVLDTS 313 (968)
Q Consensus 263 ~~~~~cpi~~~~m~d---------pv~~~~g~t~~r~~i~~~~~~~-----~~~CP~t~~~l~~~ 313 (968)
.++..|+||++...+ ++..+|||+||..||.+|.... ...||+|++.+...
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 367899999998754 4778999999999999998632 35699999987643
No 102
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.81 E-value=0.008 Score=70.93 Aligned_cols=431 Identities=16% Similarity=0.184 Sum_probs=240.3
Q ss_pred ChHHHHHHHHHHHHhcc--ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHH-HhCCchHHHH
Q 002091 392 RIEERKLAVALLLELST--CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQM-AKANYFKHLL 468 (968)
Q Consensus 392 ~~~~~~~A~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i-~~~g~v~~Lv 468 (968)
+.++++.|..++..+-. .+..+..+ +.+++.++.-+. +.-.+..|++++.-++..+-..... .-..+++.+.
T Consensus 583 DqeVkeraIscmgq~i~~fgD~l~~eL---~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~ 657 (1233)
T KOG1824|consen 583 DQEVKERAISCMGQIIANFGDFLGNEL---PRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA 657 (1233)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH
Confidence 34677788877776533 22222222 235666666664 4556778888888876544221111 1123466777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccC--chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCCh
Q 002091 469 QRLSAGPESVKMRMATTLAEMELT--DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAV 546 (968)
Q Consensus 469 ~~L~~~~~~~~~~aa~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v 546 (968)
..++......+.....++-.|..+ +....... .-++..+..++...+..+...|+..|..+...+.....-+..-.+
T Consensus 658 ~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL 736 (1233)
T KOG1824|consen 658 SFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPIL 736 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhH
Confidence 777776666666666666555321 11111111 113344445666677888999999999999877766666666788
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHH-----HHH-------H
Q 002091 547 GPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPN-----VQQ-------R 614 (968)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~-----~~~-------~ 614 (968)
+.++.++++ +-++..|+.++.++-..-.... ...-+ ...++.++...-++ +-+ .
T Consensus 737 ~~ii~ll~S-----pllqg~al~~~l~~f~alV~t~--------~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~ 802 (1233)
T KOG1824|consen 737 DEIIRLLRS-----PLLQGGALSALLLFFQALVITK--------EPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAK 802 (1233)
T ss_pred HHHHHHhhC-----ccccchHHHHHHHHHHHHHhcC--------CCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHH
Confidence 999999986 4456666665555432100000 00011 34445554432111 111 2
Q ss_pred HHHHHHHhccCCChhhHHHHHhhcCchHHHHH-hhcc-CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhc
Q 002091 615 ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQ-LCEH-DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQ 692 (968)
Q Consensus 615 al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~-ll~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~ 692 (968)
++.+|...|.. .+.. .+..|+. +... .+..++.-|.-.|..+- .+.+.. -..+....+++.++
T Consensus 803 cvA~Lt~~~~~-~s~s---------~a~kl~~~~~s~~s~~~ikvfa~LslGElg-r~~~~s----~~~e~~~~iieaf~ 867 (1233)
T KOG1824|consen 803 CVAALTCACPQ-KSKS---------LATKLIQDLQSPKSSDSIKVFALLSLGELG-RRKDLS----PQNELKDTIIEAFN 867 (1233)
T ss_pred HHHHHHHhccc-cchh---------HHHHHHHHHhCCCCchhHHHHHHhhhhhhc-cCCCCC----cchhhHHHHHHHcC
Confidence 33333333321 1111 2233333 3332 35667777777777775 222111 12234456677777
Q ss_pred cCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 002091 693 SSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE 771 (968)
Q Consensus 693 ~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~ 771 (968)
+ .+++++.+|..+||+++. +-. ..+|.+++.+.+. +.++.+.-++..-...... .+. -
T Consensus 868 s-p~edvksAAs~ALGsl~vgnl~--------~yLpfil~qi~sq----pk~QyLLLhSlkevi~~~s---vd~-----~ 926 (1233)
T KOG1824|consen 868 S-PSEDVKSAASYALGSLAVGNLP--------KYLPFILEQIESQ----PKRQYLLLHSLKEVIVSAS---VDG-----L 926 (1233)
T ss_pred C-ChHHHHHHHHHHhhhhhcCchH--------hHHHHHHHHHhcc----hHhHHHHHHHHHHHHHHhc---cch-----h
Confidence 7 466899999999999987 322 2466667766662 1344444444433222222 110 0
Q ss_pred cCChHHHHHHhh----cCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcC
Q 002091 772 AGVIPKLVQLLE----YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEAN 847 (968)
Q Consensus 772 ~g~i~~Lv~lL~----~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g 847 (968)
.-.++.++.+|. ......|.-.+.+|+.+....+ ..
T Consensus 927 ~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep----------------------------------------es 966 (1233)
T KOG1824|consen 927 KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP----------------------------------------ES 966 (1233)
T ss_pred hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh----------------------------------------HH
Confidence 122344444444 3455678888999999874321 12
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP 922 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 922 (968)
.++.|-..+.++.+.++..+..|..-.. +.. +... .+. .+-+.....++++++..|++.|+.++.....+.
T Consensus 967 LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p--~~id-~~l-k~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 967 LLPKLKLLLRSEASNTRSSVVSAVKFSISDQP--QPID-PLL-KQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred HHHHHHHHhcCCCcchhhhhhheeeeeecCCC--CccC-HHH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 5777778888888988888888877666 221 1111 111 223555667778999999999999888776443
No 103
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.7e-05 Score=80.95 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=47.7
Q ss_pred CCCCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 002091 260 LEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSIL 315 (968)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l 315 (968)
..++..+.|-+|++-+.||--+||||-||=+||..|... ..-||.|++++.|..+
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 335567999999999999999999999999999999964 4569999999977654
No 104
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=0.0068 Score=72.70 Aligned_cols=419 Identities=12% Similarity=0.090 Sum_probs=253.8
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHH
Q 002091 472 SAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVD 551 (968)
Q Consensus 472 ~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~ 551 (968)
+...+.+|..++.-+++++..-.. .....+.++.++++..++...++..|...+.++...-..-. =...-..+.++.
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~ 323 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQ 323 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHH
Confidence 344677888888888887643332 55668899999999999888999999999988874221111 112235566777
Q ss_pred HhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhH
Q 002091 552 LLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNI 631 (968)
Q Consensus 552 lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~ 631 (968)
...++. ..++.........+...-.. . ......++....+++....+.+..+..-...++.... .+.
T Consensus 324 ~~~d~~---~~v~~~~~~~~~~L~~~~~~-~--------~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~-~~~ 390 (759)
T KOG0211|consen 324 AVEDGS---WRVSYMVADKFSELSSAVGP-S--------ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN-ASC 390 (759)
T ss_pred HhcChh---HHHHHHHhhhhhhHHHHhcc-c--------cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC-ccc
Confidence 776654 34444444444444331100 0 1112335566666666655665555544444443311 111
Q ss_pred HHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCC
Q 002091 632 KTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP 711 (968)
Q Consensus 632 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~ 711 (968)
+..+.....+|.+-.++.+.+..++.+.+.....+. .-.+. .-.-....+.++..++. ...+++.+....+..+-
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~-p~~~k---~~ti~~llp~~~~~l~d-e~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLS-PILPK---ERTISELLPLLIGNLKD-EDPIVRLNLIDKLSLLE 465 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccC-ccCCc---CcCccccChhhhhhcch-hhHHHHHhhHHHHHHHH
Confidence 222333445788888888888888888877777765 11110 00011233444444444 34456555554444443
Q ss_pred C-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHH
Q 002091 712 E-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTK 790 (968)
Q Consensus 712 ~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~ 790 (968)
. .+...........++.+..+-.. ....++....+.+..++.. .. ..+.+...-+.+...+.+....++
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d------~~wRvr~ail~~ip~la~q---~~-~~~~~~~~~~l~~~~l~d~v~~Ir 535 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAED------LLWRVRLAILEYIPQLALQ---LG-VEFFDEKLAELLRTWLPDHVYSIR 535 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccc------hhHHHHHHHHHHHHHHHHh---hh-hHHhhHHHHHHHHhhhhhhHHHHH
Confidence 3 44444445556667777777666 4567788888888877753 12 244444455666666777777999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHH
Q 002091 791 EHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDA 870 (968)
Q Consensus 791 ~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~a 870 (968)
..|+..+..++..-+ ..+ .....++.++....+++...|...+.+
T Consensus 536 ~~aa~~l~~l~~~~G-~~w----------------------------------~~~~~i~k~L~~~~q~~y~~R~t~l~s 580 (759)
T KOG0211|consen 536 EAAARNLPALVETFG-SEW----------------------------------ARLEEIPKLLAMDLQDNYLVRMTTLFS 580 (759)
T ss_pred HHHHHHhHHHHHHhC-cch----------------------------------hHHHhhHHHHHHhcCcccchhhHHHHH
Confidence 999999988874222 000 011245666666666677788888888
Q ss_pred HHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhcccCCchhhHH
Q 002091 871 LVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSL 950 (968)
Q Consensus 871 L~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~ 950 (968)
+..++. -.-..+.....++.+.++..++.+.|+-+++..|.++...-... .......+.+..+..+.+.++|-.
T Consensus 581 i~~la~-----v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~-~~~~~v~pll~~L~~d~~~dvr~~ 654 (759)
T KOG0211|consen 581 IHELAE-----VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES-VRDEEVLPLLETLSSDQELDVRYR 654 (759)
T ss_pred HHHHHH-----HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH-HHHHHHHHHHHHhccCcccchhHH
Confidence 887771 01134556667889999999999999999999999986533211 111112355667777888999999
Q ss_pred HHHHHHHHhhcc
Q 002091 951 SARVLAHLNVLQ 962 (968)
Q Consensus 951 A~~aL~~L~~~~ 962 (968)
|.-++..+...-
T Consensus 655 a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 655 AILAFGSIELSR 666 (759)
T ss_pred HHHHHHHHHHHH
Confidence 988887665443
No 105
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0027 Score=65.92 Aligned_cols=295 Identities=15% Similarity=0.105 Sum_probs=175.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHH-hCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhc
Q 002091 424 LLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMA-KANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEG 502 (968)
Q Consensus 424 ~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~-~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~ 502 (968)
-.|+.++.+.++.++..|+..+..++.. ..+.... +.-.++.+.++++...+ -+.|+.+|.|++.+...+..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578889999999999999999999765 3332222 13346667777776555 567899999999999888888777
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHH-------cCChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIK-------EGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-------~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
.+..++.++.++....-...+..|.||+..+.....+.. .|.+.........+... ..--.+.+.++.||+
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~-~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNA-YAEFHYLAPVFANLS 160 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccccc-ccchhHHHHHHHHHh
Confidence 888899988877666777888899999976655443321 33344434444332211 122456677889998
Q ss_pred cCcccccCCCCccccccchhHHHHHHHhhccCCHHHHH-HHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChh
Q 002091 576 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQ-RILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNEN 654 (968)
Q Consensus 576 ~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~-~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 654 (968)
....+|.. .+.........+.-+...+..++. ..+++|.|.|......+ .+.. ..+..|..
T Consensus 161 ~~~~gR~l------~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~---~lL~-e~~~lLp~-------- 222 (353)
T KOG2973|consen 161 QFEAGRKL------LLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHE---VLLD-ESINLLPA-------- 222 (353)
T ss_pred hhhhhhhH------hcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHH---HHhc-chHHHHHH--------
Confidence 87777664 332221211122222233334433 47777777775433222 1111 11222222
Q ss_pred HHHHHHHHHHHhccCC--ChhHHHHhhccccHHHHHHHhccC----CCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHH
Q 002091 655 VRANAVKLFCCLVDDG--DEAIIREHVGQKCLETLVTIIQSS----HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPI 728 (968)
Q Consensus 655 v~~~a~~~L~~Ls~~~--~~~~~~~~~~~~~i~~Lv~lL~~~----~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~ 728 (968)
+|.-|+... +++. ...++.=+++|..+ .+++++..-+.+|.-|+.....++.+++.|+-+.
T Consensus 223 -------iLlPlagpee~sEEd------m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpi 289 (353)
T KOG2973|consen 223 -------ILLPLAGPEELSEED------MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPI 289 (353)
T ss_pred -------HHhhcCCccccCHHH------HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHH
Confidence 222222110 1110 11222222555422 5778999999999999998899999999888887
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHhhccC
Q 002091 729 VLNFLKNGRQNDPNRFQVVENAVGALRRFTA 759 (968)
Q Consensus 729 Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~ 759 (968)
+..+=+.. .++++++.+-....-+..
T Consensus 290 lRElhk~e-----~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 290 LRELHKWE-----EDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHHHhcCC-----CcHHHHHHHHHHHHHHHh
Confidence 77655542 445566555444443333
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0024 Score=66.48 Aligned_cols=276 Identities=15% Similarity=0.146 Sum_probs=185.8
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhccCCChhH---HHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhH
Q 002091 641 IPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI---IREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFT 717 (968)
Q Consensus 641 i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~ 717 (968)
.+.|-.=+..++..++.-+|+.+..+.++.+... +..++..+..+.++..+.. ++.++..+|...+..++..+...
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcHHHH
Confidence 3444444556788999999998888886655333 3344577888999988877 57789999999999999877777
Q ss_pred HHHHHcCCHHHH--HHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc-CChHHHHHHH
Q 002091 718 QWLLDAGALPIV--LNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY-GTTLTKEHAA 794 (968)
Q Consensus 718 ~~l~~~g~l~~L--v~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~Aa 794 (968)
+.+.+...+..+ +++-.. .++-.|......+..+..- ++.........|.+..|..-|.- .|.-+...+.
T Consensus 163 eaiFeSellDdlhlrnlaak------cndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaElkGteDtLVianci 235 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAK------CNDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAELKGTEDTLVIANCI 235 (524)
T ss_pred HHhcccccCChHHHhHHHhh------hhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence 888877776443 333333 3445666677777777665 78888889999999998888874 4667777777
Q ss_pred HHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccC--CChhhhHHHHHHHH
Q 002091 795 TSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLED--PDHGACEASLDALV 872 (968)
Q Consensus 795 ~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~ 872 (968)
.....+.... ..+..+.+.|.|+.++++... ++|--.-.++....
T Consensus 236 ElvteLaete---------------------------------HgreflaQeglIdlicnIIsGadsdPfekfralmgfg 282 (524)
T KOG4413|consen 236 ELVTELAETE---------------------------------HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFG 282 (524)
T ss_pred HHHHHHHHHh---------------------------------hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH
Confidence 7777777421 234556778999999998874 45555555666666
Q ss_pred hhhcccc-----cchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCC---chhhhhcccCC
Q 002091 873 TLIEGER-----LQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQ---MPLVDLTQRGN 944 (968)
Q Consensus 873 ~L~~~~~-----~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~~Lv~ll~~~~ 944 (968)
.+...+. .+..++.+. -+++...+.+.+.+|+.++.|+..+..+....+..+..-..+. .+++.-..+.+
T Consensus 283 kffgkeaimdvseeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 283 KFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc
Confidence 6651111 011122221 1345566667789999999999999999887776665544443 34544444433
Q ss_pred -chhhHHHHHHHHHHh
Q 002091 945 -SSMKSLSARVLAHLN 959 (968)
Q Consensus 945 -~~~~~~A~~aL~~L~ 959 (968)
..-+..+-++|+.+.
T Consensus 361 ahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIA 376 (524)
T ss_pred ccchHHHHHHHHHHhh
Confidence 333455677777764
No 107
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.78 E-value=0.00039 Score=62.94 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=104.9
Q ss_pred hHHHHHHhhc--cChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHH
Q 002091 381 AVESIVRSLG--RRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQM 458 (968)
Q Consensus 381 ~v~~lv~~L~--~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i 458 (968)
-++.+|.-.. .+.+.+++.+.-|.+++.+|.+...+.+ ..++...+.-+...+....+.++..|+|+|.+..|+..|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 3444555442 3456788888899999999999999998 799999999999999999999999999999999999999
Q ss_pred HhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc-hhhHHHhhcCchHHHHHh
Q 002091 459 AKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLHL 511 (968)
Q Consensus 459 ~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~-~~~~~i~~~g~i~~Lv~l 511 (968)
.++++++.++..|++++..+-..|+.++..|+... ..+..+....++..+.+.
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 99999999999999998888888999998886543 445555544444443333
No 108
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=6.7e-06 Score=85.72 Aligned_cols=67 Identities=24% Similarity=0.298 Sum_probs=59.2
Q ss_pred CCcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcC-CCCCCccCHhHHHHHHHHH
Q 002091 263 LQSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVL-DTSILRPNKTLRQSIEEWK 329 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l-~~~~l~pn~~l~~~I~~w~ 329 (968)
-.+|.||||+.+++--.++ .|+|.||+.||-+-+..|+..||.|++.+ ....|.++..+-.+|.+..
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 3689999999999998887 59999999999999999999999999999 6778888888888887654
No 109
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0046 Score=72.05 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=79.7
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 500 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~ 500 (968)
+++..++.-..++++.++..|++.+..+-...-. .-...++.+.++++++.+|..++....++-..+ .....
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~------ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--~~~~~ 157 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT------EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID--PDLVE 157 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH------HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC--hhhcc
Confidence 5566666666788899998888777655321111 123578889999999999999888887774332 33345
Q ss_pred hcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCC
Q 002091 501 EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP 534 (968)
Q Consensus 501 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 534 (968)
+.|.++.|-+++.+.+|.+..+|+.+|..+....
T Consensus 158 ~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 158 DSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999998533
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.74 E-value=0.0075 Score=67.41 Aligned_cols=279 Identities=21% Similarity=0.217 Sum_probs=176.4
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 500 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~ 500 (968)
..++.++..+.+++..++..|...+..+ .....++.+...|...++.+|..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 4578888889888899998888886543 3345688899999999999999999877555 3
Q ss_pred hcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCC---------CcchHHHHHHH
Q 002091 501 EGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSS---------SSSLREETATA 570 (968)
Q Consensus 501 ~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~---------~~~~~~~a~~~ 570 (968)
....++.|+.++. +.+..++..+..+|+.+-. ..++.+++..+.+.... ...++..++..
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 3457899999998 5889999999999999843 23478888888764310 01244455555
Q ss_pred HHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc
Q 002091 571 IMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH 650 (968)
Q Consensus 571 L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~ 650 (968)
|..+- ....++.+..++......++..+..+|..+.... ..+.+.+...+..
T Consensus 173 l~~~~-----------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~~ 224 (335)
T COG1413 173 LGELG-----------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------VEAADLLVKALSD 224 (335)
T ss_pred HHHcC-----------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------hhHHHHHHHHhcC
Confidence 54433 2445677777777777788888888887765321 1345677777777
Q ss_pred CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHH
Q 002091 651 DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVL 730 (968)
Q Consensus 651 ~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv 730 (968)
++..++..++.+|..+- ....+..+...+...+ ..+...+...+..+-. ......+.
T Consensus 225 ~~~~vr~~~~~~l~~~~------------~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~----------~~~~~~l~ 281 (335)
T COG1413 225 ESLEVRKAALLALGEIG------------DEEAVDALAKALEDED-VILALLAAAALGALDL----------AEAALPLL 281 (335)
T ss_pred CCHHHHHHHHHHhcccC------------cchhHHHHHHHHhccc-hHHHHHHHHHhcccCc----------hhhHHHHH
Confidence 88888888887777764 1234556666665532 2233332222221110 11123333
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHh
Q 002091 731 NFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLA 798 (968)
Q Consensus 731 ~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~ 798 (968)
..+.+ ....++..+..++..... ......+.....+++..++..+...+.
T Consensus 282 ~~~~~------~~~~~~~~~~~~l~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (335)
T COG1413 282 LLLID------EANAVRLEAALALGQIGQ------------EKAVAALLLALEDGDADVRKAALILLE 331 (335)
T ss_pred HHhhc------chhhHHHHHHHHHHhhcc------------cchHHHHHHHhcCCchhhHHHHHHHHH
Confidence 44444 344555566555554443 233444555555666666665555543
No 111
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0018 Score=72.28 Aligned_cols=349 Identities=15% Similarity=0.176 Sum_probs=206.4
Q ss_pred HHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002091 541 IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN 620 (968)
Q Consensus 541 ~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~ 620 (968)
.-.+.+++.+..+.+.+ ..++..|...|.|++.-..+.. +.-.+.....+..+...++..++.. ...|-
T Consensus 81 Y~~~iv~Pv~~cf~D~d---~~vRyyACEsLYNiaKv~k~~v-------~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLd 149 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD---SQVRYYACESLYNIAKVAKGEV-------LVYFNEIFDVLCKLSADSDQNVRGG-AELLD 149 (675)
T ss_pred HHHHhhHHHHHhccCcc---ceeeeHhHHHHHHHHHHhccCc-------ccchHHHHHHHHHHhcCCccccccH-HHHHH
Confidence 55678999999998776 7889999999999986433221 2223334444555555555544432 22222
Q ss_pred HhccCCChhhHHHHHhh-------cCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhcc
Q 002091 621 ALCRSPSAGNIKTTLTQ-------CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS 693 (968)
Q Consensus 621 ~L~~~~~~~~~~~~i~~-------~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 693 (968)
.+. ++++.+ .+.+|.|-+-+-..++..|...+.-|..|- ..++-..-. .-....+-|...|..
T Consensus 150 RLi--------kdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~~m~~-yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 150 RLI--------KDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDLEMIS-YLPSLLDGLFNMLSD 219 (675)
T ss_pred HHH--------HHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcHHHHh-cchHHHHHHHHHhcC
Confidence 222 112221 234555555555568889998888888874 222211111 123466777777776
Q ss_pred CCCHHHHHHHHHHHhcC----CCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091 694 SHNEEEIASAMGILSKL----PEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 769 (968)
Q Consensus 694 ~~~~~~~~~Al~~L~nL----~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~ 769 (968)
. ..+++.-+=.+++++ ..++... --...++.++.-+.+ +++.++..|+.-+..+..-...+. ..
T Consensus 220 ~-s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~s------s~~~iq~~al~Wi~efV~i~g~~~--l~ 287 (675)
T KOG0212|consen 220 S-SDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQS------SEPEIQLKALTWIQEFVKIPGRDL--LL 287 (675)
T ss_pred C-cHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccC------CcHHHHHHHHHHHHHHhcCCCcch--hh
Confidence 4 455664444434332 2222221 112345666666666 567788777666666655322222 22
Q ss_pred HHcCChHHHHHHhhcCChH-HHHHHHHH---HhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhh
Q 002091 770 AEAGVIPKLVQLLEYGTTL-TKEHAATS---LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLE 845 (968)
Q Consensus 770 ~~~g~i~~Lv~lL~~~~~~-v~~~Aa~a---L~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~ 845 (968)
.-.|++..+...+.+..+. ++..+... |..+.... ..+ +. ++
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~---------~~~----------------------~~---id 333 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE---------RLK----------------------EE---ID 333 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh---------hhc----------------------cc---cc
Confidence 2355666666666655553 44433322 22222100 000 00 11
Q ss_pred -cCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 846 -ANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 846 -~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
...++.|...+.++..+++.+++..+..|- .. ++..........+.|..-+.+++..|...++.++..+..+++
T Consensus 334 ~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~----p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 334 YGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA----PGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC----cchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 136778888888999999999999999887 22 344555566777888888889999999999999999987765
Q ss_pred hHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHhhcc
Q 002091 924 FKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQ 962 (968)
Q Consensus 924 ~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~~ 962 (968)
.... ......|++++...+.-++.++.-+.++|+.+-
T Consensus 410 ~~~~--~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 410 SPNL--RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred cccH--HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence 3311 113456778887777777888888888887543
No 112
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.69 E-value=0.012 Score=65.69 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=83.4
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccccc
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 582 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 582 (968)
..++.+++++.+.+..++..|...+..+- ..-+++.+..++.+.+ +.++..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~---~~vr~~a~~aLg~~~------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDED---PRVRDAAADALGELG------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCC---HHHHHHHHHHHHccC-------
Confidence 46788899999889999999999877652 2347889999998776 788999999887754
Q ss_pred CCCCccccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCC
Q 002091 583 SSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN 652 (968)
Q Consensus 583 ~~~~~~~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 652 (968)
.+..++.++.++. +.+..++..+.++|..+-. ..++..++..+....
T Consensus 103 ----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------------~~a~~~l~~~l~~~~ 150 (335)
T COG1413 103 ----------DPEAVPPLVELLENDENEGVRAAAARALGKLGD-------------ERALDPLLEALQDED 150 (335)
T ss_pred ----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------------hhhhHHHHHHhccch
Confidence 3467888898888 5888999999999988732 135777788877654
No 113
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0026 Score=71.00 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=178.7
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCC-C-ccHH
Q 002091 461 ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-P-QNGL 538 (968)
Q Consensus 461 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~-~~~~ 538 (968)
.+.+++++..++..+..+|..|+..|++++..........-......|-++..+.+..++. ++..|-.|-.+ . +...
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccccc
Confidence 4568899999999999999999999999964322222111233444555555444444443 33333333210 0 0000
Q ss_pred HHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHH
Q 002091 539 QMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQT 618 (968)
Q Consensus 539 ~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~ 618 (968)
.+-=.+.||.|-+-+...+ +..+...+.-|..|-.-+. .+. +---......|+.++++.+++++..+-.+
T Consensus 162 tFsL~~~ipLL~eriy~~n---~~tR~flv~Wl~~Lds~P~-~~m------~~yl~~~ldGLf~~LsD~s~eVr~~~~t~ 231 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVIN---PMTRQFLVSWLYVLDSVPD-LEM------ISYLPSLLDGLFNMLSDSSDEVRTLTDTL 231 (675)
T ss_pred ccCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhcCCc-HHH------HhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 1111233444444444333 6667777766666544321 110 11124556778888999999988654443
Q ss_pred H----HHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC
Q 002091 619 F----NALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS 694 (968)
Q Consensus 619 L----~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 694 (968)
| ..+.+.|.+- .-...++.++.-+.++++.++..|+.-+..+..-...... ..-.|++..++.++.+.
T Consensus 232 l~~fL~eI~s~P~s~------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l--~~~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 232 LSEFLAEIRSSPSSM------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL--LYLSGILTAILPCLSDT 303 (675)
T ss_pred HHHHHHHHhcCcccc------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh--hhhhhhhhhcccCCCCC
Confidence 3 4444444331 1235688899999999999999998878777633322211 12346667777777665
Q ss_pred CCHHHHHHHH---HHHhcCCCCHHhHHHHHHcC-CHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHH
Q 002091 695 HNEEEIASAM---GILSKLPEVPQFTQWLLDAG-ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA 770 (968)
Q Consensus 695 ~~~~~~~~Al---~~L~nL~~~~~~~~~l~~~g-~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~ 770 (968)
....++..+. +.+..+..++...+. ++-| .++.+...+.+ .....|-.+..-+..+-.. -..+-...
T Consensus 304 e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~------~~~~tri~~L~Wi~~l~~~--~p~ql~~h 374 (675)
T KOG0212|consen 304 EEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD------DREETRIAVLNWIILLYHK--APGQLLVH 374 (675)
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc------chHHHHHHHHHHHHHHHhh--Ccchhhhh
Confidence 4332333332 233444442222222 3333 34667777776 3444454444434333332 12222344
Q ss_pred HcCChHHHHHHhhcCChHHHHHHHHHHhhhcccC
Q 002091 771 EAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 771 ~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s 804 (968)
.....+.|.+-|.+.+.++-..+...+++++.++
T Consensus 375 ~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 375 NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 5678899999999999999999999999998544
No 114
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.011 Score=66.18 Aligned_cols=372 Identities=16% Similarity=0.148 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC--CHHHHHHHHHHHHHhc-CCCccHHHHHHc---C----
Q 002091 475 PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLS-SVPQNGLQMIKE---G---- 544 (968)
Q Consensus 475 ~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls-~~~~~~~~i~~~---g---- 544 (968)
++.++..|-.-|.+++..+-.+ .+..|++.|-+. .+.+|..|.-+|.|-- ..++.++.-... |
T Consensus 18 D~n~rl~aE~ql~~l~~~dF~q-------f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E 90 (858)
T COG5215 18 DPNARLRAEAQLLELQSGDFEQ-------FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHE 90 (858)
T ss_pred CCCccccHHHHHHHhccccHHH-------HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHH
Confidence 3444444545555555444322 234455555432 5677777777777754 233322221111 1
Q ss_pred ---ChH-HHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCH-HHHHHHHHHH
Q 002091 545 ---AVG-PLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGP-NVQQRILQTF 619 (968)
Q Consensus 545 ---~v~-~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~-~~~~~al~~L 619 (968)
-|+ ...+.|.+.. +.....|+.+++.|+...-.... -.+....++.....+.| ..+...+.++
T Consensus 91 ~k~qvK~~al~aL~s~e---pr~~~~Aaql~aaIA~~Elp~~~---------wp~lm~~mv~nvg~eqp~~~k~~sl~~~ 158 (858)
T COG5215 91 SKEQVKGMALRALKSPE---PRFCTMAAQLLAAIARMELPNSL---------WPGLMEEMVRNVGDEQPVSGKCESLGIC 158 (858)
T ss_pred HHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHhhCcccc---------chHHHHHHHHhccccCchHhHHHHHHHH
Confidence 111 1233454443 67778888888888864321111 12333344444444444 5777899999
Q ss_pred HHhccCCChhhHHHHHhhcC-chHHHH-Hhhcc-CChhHHHHHHHHHHH-hccCCChhHHHHhhccc-cHHHHHHHhccC
Q 002091 620 NALCRSPSAGNIKTTLTQCS-AIPVLV-QLCEH-DNENVRANAVKLFCC-LVDDGDEAIIREHVGQK-CLETLVTIIQSS 694 (968)
Q Consensus 620 ~~L~~~~~~~~~~~~i~~~g-~i~~Lv-~ll~~-~~~~v~~~a~~~L~~-Ls~~~~~~~~~~~~~~~-~i~~Lv~lL~~~ 694 (968)
.+.|.+..+.. .+...+ ++-.++ .-+++ .+..+|..|+++|.+ |-+-..+ ...-.+.. .++..++.-+.
T Consensus 159 gy~ces~~Pe~---li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~n--f~~E~erNy~mqvvceatq~- 232 (858)
T COG5215 159 GYHCESEAPED---LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGN--FCYEEERNYFMQVVCEATQG- 232 (858)
T ss_pred HHHhhccCHHH---HHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHh--hcchhhhchhheeeehhccC-
Confidence 99997654422 222222 222222 23333 367899999999987 3211000 00000111 22223333333
Q ss_pred CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH----
Q 002091 695 HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA---- 769 (968)
Q Consensus 695 ~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~---- 769 (968)
.+.+++.+|.++|..+.. .-+..+..++.-........+++ +++.+.-.++...+.++.. ..+..-..
T Consensus 233 ~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks------~nd~va~qavEfWsticeE-eid~~~e~~~~p 305 (858)
T COG5215 233 NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS------QNDEVAIQAVEFWSTICEE-EIDGEMEDKYLP 305 (858)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------cchHHHHHHHHHHHHHHHH-HhhhHHHHhhcc
Confidence 678999999999999988 66666666665556666777777 6778888888777666653 11111000
Q ss_pred ------------HHcCChHHHHHHhhcC-------ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCccccc
Q 002091 770 ------------AEAGVIPKLVQLLEYG-------TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQV 830 (968)
Q Consensus 770 ------------~~~g~i~~Lv~lL~~~-------~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~ 830 (968)
.-.+++|.|.++|... +..+...|..+|.-++..-+
T Consensus 306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g------------------------- 360 (858)
T COG5215 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG------------------------- 360 (858)
T ss_pred cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh-------------------------
Confidence 1134789999999852 33677888888888874221
Q ss_pred CCCccCcccchHHhhcCChHHHHh----hccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChH
Q 002091 831 HGGLCGIESSFCLLEANAVRPLVR----VLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPK 906 (968)
Q Consensus 831 h~~~c~~~~~~~l~~~g~i~~Lv~----lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~ 906 (968)
...+.|.+. -+++++..-++++..|+..+.++- .+.+..-.-.++++.|...+.++.--
T Consensus 361 ---------------d~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp--~~~~lT~~V~qalp~i~n~m~D~~l~ 423 (858)
T COG5215 361 ---------------DKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP--CEDCLTKIVPQALPGIENEMSDSCLW 423 (858)
T ss_pred ---------------hHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc--cHHHHHhhHHhhhHHHHHhcccceee
Confidence 123444443 445677889999999999998331 12333333457889999999988888
Q ss_pred HHHHHHHHHHHHhc
Q 002091 907 LQEKALDSVERIFR 920 (968)
Q Consensus 907 v~~~a~~~L~~l~~ 920 (968)
++..+.|++..|..
T Consensus 424 vk~ttAwc~g~iad 437 (858)
T COG5215 424 VKSTTAWCFGAIAD 437 (858)
T ss_pred hhhHHHHHHHHHHH
Confidence 99999999998864
No 115
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.65 E-value=7.4e-05 Score=54.56 Aligned_cols=40 Identities=38% Similarity=0.414 Sum_probs=37.7
Q ss_pred CHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 762 NLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 762 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
+++.++.+.+.|++|.|+.+|.++++.+++.|+|+|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999997
No 116
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.054 Score=63.18 Aligned_cols=204 Identities=15% Similarity=0.136 Sum_probs=126.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcC
Q 002091 424 LLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGN 503 (968)
Q Consensus 424 ~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g 503 (968)
..|..+|.|.....+..|.+-+..+-....|.. ..++.+|+...+.+.++|...--.|..-+..+.+-.. =
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS-----~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----L 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS-----LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----L 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH-----HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----e
Confidence 357778888877778888877776644444422 3478888888888999998766555555543332221 1
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhccc-CCCCcchHHHHHHHHHHhhcCccccc
Q 002091 504 VLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH-SSSSSSLREETATAIMHLAVSTMYQE 582 (968)
Q Consensus 504 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~ 582 (968)
-|..+-+-|+++++.+|..|+++|..+= .-++ +|.++-.+++. .+..+.++..|+.++-.|=+-+....
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIR------vp~I----aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIR------VPMI----APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhH----HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 4667777889999999998888887661 1111 22222222221 12237899999999988876432222
Q ss_pred CCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHH
Q 002091 583 SSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKL 662 (968)
Q Consensus 583 ~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~ 662 (968)
...+..+-.++.+.+|.+.-.|+.++-..|.. .- +.+. +--..|.+++..-++=-|...+..
T Consensus 179 -----------~qL~e~I~~LLaD~splVvgsAv~AF~evCPe--rl---dLIH--knyrklC~ll~dvdeWgQvvlI~m 240 (968)
T KOG1060|consen 179 -----------DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RL---DLIH--KNYRKLCRLLPDVDEWGQVVLINM 240 (968)
T ss_pred -----------HHHHHHHHHHhcCCCCcchhHHHHHHHHhchh--HH---HHhh--HHHHHHHhhccchhhhhHHHHHHH
Confidence 23456666788899999999999999888742 11 1111 224455566654444334444444
Q ss_pred HH
Q 002091 663 FC 664 (968)
Q Consensus 663 L~ 664 (968)
|.
T Consensus 241 L~ 242 (968)
T KOG1060|consen 241 LT 242 (968)
T ss_pred HH
Confidence 43
No 117
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.63 E-value=0.008 Score=69.24 Aligned_cols=265 Identities=17% Similarity=0.167 Sum_probs=167.3
Q ss_pred HHHHHHhccChhHHHHhhhccChHHHHHHhh----------cCCCHHHHHHHHHHHHhccC-CchhHHHHHhCCchHHHH
Q 002091 400 VALLLELSTCNTLRDQIGDVQGCILLLVTMA----------SSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLL 468 (968)
Q Consensus 400 ~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL----------~s~~~~~~~~a~~~L~~Ls~-~~~n~~~i~~~g~v~~Lv 468 (968)
+..|+-+++++.....+.. ..++..|..+- ...+..+...|.++|.|+-. ++..|..+++.|+.+.++
T Consensus 2 L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4456666666666555555 34555565554 35678999999999999984 556688888999999999
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHhc-cCchhhHHHhh-cCchHHHHHhhhc-----------------CCHHHHHHHH
Q 002091 469 QRLSAG-----PESVKMRMATTLAEME-LTDHHKASLLE-GNVLGPLLHLVSR-----------------GDIQMKKVAV 524 (968)
Q Consensus 469 ~~L~~~-----~~~~~~~aa~~L~~L~-~~~~~~~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~a~ 524 (968)
..|+.. +.+.......+||-+. ...+.+..+.+ .+++..++..|.. .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999887 7888888999999884 45566766665 5777777765432 1335577899
Q ss_pred HHHHHhcCCCccHHHHHHcCChHHHHHHhccc---C---CCCcchHHHHHHHHHHhhcCcccc----cCC-CCccccccc
Q 002091 525 KALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH---S---SSSSSLREETATAIMHLAVSTMYQ----ESS-QTPVTLLES 593 (968)
Q Consensus 525 ~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~---~---~~~~~~~~~a~~~L~~La~~~~~~----~~~-~~~~~il~~ 593 (968)
+.++|+..+......-...+.++.++.++..- . ........+++.+|.|+--..... ... .....--..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999985333222112334566666655432 1 122456778888888873211000 000 000001122
Q ss_pred hhHHHHHHHhhcc----C-C---HHHHHHHHHHHHHhccCCChhhHHHHHhh----------------cCchHHHHHhhc
Q 002091 594 DKEIFMLFSLINL----T-G---PNVQQRILQTFNALCRSPSAGNIKTTLTQ----------------CSAIPVLVQLCE 649 (968)
Q Consensus 594 ~~~i~~l~~ll~~----~-~---~~~~~~al~~L~~L~~~~~~~~~~~~i~~----------------~g~i~~Lv~ll~ 649 (968)
...+..++.++.. . . .+...-.+.+|.+++.. +..+|+.++. ...-..|++++.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~--~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA--AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh--cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 3445555555541 1 1 13444566777777754 2556666654 223456888888
Q ss_pred cCChhHHHHHHHHHHHhc
Q 002091 650 HDNENVRANAVKLFCCLV 667 (968)
Q Consensus 650 ~~~~~v~~~a~~~L~~Ls 667 (968)
+..+.++..+...|+.|+
T Consensus 319 ~~~~~~k~~vaellf~Lc 336 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLC 336 (446)
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 888899999999999997
No 118
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.61 E-value=8.2e-05 Score=54.32 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=37.7
Q ss_pred CchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC
Q 002091 492 TDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 492 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
+++++..+.+.|++|.|+++|+++++++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35788899999999999999999999999999999999973
No 119
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.00055 Score=77.40 Aligned_cols=257 Identities=15% Similarity=0.108 Sum_probs=165.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCC-h-h-
Q 002091 597 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGD-E-A- 673 (968)
Q Consensus 597 i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~-~-~- 673 (968)
...+..+.+..++.++.+|+..|..|...-.-.. -.....++++.++++.+|..|+++++....... + +
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~--------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK--------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccH--------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3334555556678899999999988864211111 135567788999999999999998888763321 1 0
Q ss_pred -HHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHH
Q 002091 674 -IIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 751 (968)
Q Consensus 674 -~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~ 751 (968)
.-..-....++..+...+... +..++..|+.+|+.+-. ++++....++..++..+..-=.. .+...
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a-----------hkrpk 339 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA-----------HKRPK 339 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc-----------ccchH
Confidence 000111124566667776663 44678888999998888 77776666655555432211100 01111
Q ss_pred HHHhhc--cCC----------CCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 002091 752 GALRRF--TAP----------TNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWC 819 (968)
Q Consensus 752 ~aL~~L--~~~----------~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~ 819 (968)
....+- +.+ ...+-...++.+|+--.++.-|.+.=.+||.+|...++.|+.++++.
T Consensus 340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F------------ 407 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF------------ 407 (823)
T ss_pred HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc------------
Confidence 111111 111 01112345677888888888888777799999999999999776541
Q ss_pred cCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHH
Q 002091 820 FSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRF 899 (968)
Q Consensus 820 ~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~l 899 (968)
...+++.|++++.+....||..|+.+|..++.. .-....-++.+...
T Consensus 408 -------------------------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--------l~i~eeql~~il~~ 454 (823)
T KOG2259|consen 408 -------------------------AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--------LAIREEQLRQILES 454 (823)
T ss_pred -------------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--------heecHHHHHHHHHH
Confidence 223789999999999999999999999999821 11233446677777
Q ss_pred hcCCChHHHHHHHHHHHHH
Q 002091 900 LSSPSPKLQEKALDSVERI 918 (968)
Q Consensus 900 l~~~~~~v~~~a~~~L~~l 918 (968)
+.+.++++++....+|.+.
T Consensus 455 L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 455 LEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHhcCHHHHHHHHHHHHhc
Confidence 7778888888777766654
No 120
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=8.3e-05 Score=78.26 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=43.8
Q ss_pred CcccccccccC-CCCc----eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCC----CccCHhH
Q 002091 264 QSFYCPITRDV-MVDP----VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSI----LRPNKTL 321 (968)
Q Consensus 264 ~~~~cpi~~~~-m~dp----v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~----l~pn~~l 321 (968)
++-.||+|..- ...| .+.+|||+||++||...|..+...||.|+.++.... ..++..+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~v 68 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTV 68 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHH
Confidence 45689999983 2244 233799999999999988777789999999997665 4445444
No 121
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.59 E-value=0.024 Score=63.40 Aligned_cols=312 Identities=14% Similarity=0.151 Sum_probs=190.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcC--CHHHHHHHHHHHHHhccCchhhHHH
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG--PESVKMRMATTLAEMELTDHHKASL 499 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~--~~~~~~~aa~~L~~L~~~~~~~~~i 499 (968)
..+.+..++-+++.+++..+.++++.+..+......+.+.+.--.++.-|... +..-|++|...+..+...+.... .
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~-~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK-E 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc-c
Confidence 34444444445559999999999999988888888888877666666667654 46788899999988744322111 1
Q ss_pred hhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091 500 LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 579 (968)
Q Consensus 500 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 579 (968)
...|.+..++.+..+.+...+..|+.+|..|+.. +.+.++.+||+..|++.+.++. .++.+..+.++..+...+.
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~---~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGS---FSISESLLDTLLYLLDSPR 179 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhcc---HhHHHHHHHHHHHHhCCcc
Confidence 2467899999999999999999999999999852 3456788999999999998754 4578888899999998887
Q ss_pred cccCCCCccccccchhHHHHHHHhhc-------cCCH--HHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc
Q 002091 580 YQESSQTPVTLLESDKEIFMLFSLIN-------LTGP--NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH 650 (968)
Q Consensus 580 ~~~~~~~~~~il~~~~~i~~l~~ll~-------~~~~--~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~ 650 (968)
.|.. +..+--+..++.-+. ..+. +-...+..++..+-++..|--. -.+....++..|+..+..
T Consensus 180 tR~y-------l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~-l~~~~~~~lksLv~~L~~ 251 (371)
T PF14664_consen 180 TRKY-------LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLY-LSMNDFRGLKSLVDSLRL 251 (371)
T ss_pred hhhh-------hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceee-eecCCchHHHHHHHHHcC
Confidence 6653 222222222222222 1122 2333444555554443222100 000112478889999999
Q ss_pred CChhHHHHHHHHHHHhccCCChhHHHHhh------ccccHHHHHHHhccCCCHHHHHHHHHHH-------hcCCC--CHH
Q 002091 651 DNENVRANAVKLFCCLVDDGDEAIIREHV------GQKCLETLVTIIQSSHNEEEIASAMGIL-------SKLPE--VPQ 715 (968)
Q Consensus 651 ~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~------~~~~i~~Lv~lL~~~~~~~~~~~Al~~L-------~nL~~--~~~ 715 (968)
++++++......+..+-.-..+....... ..+....-.++-... ...-..+ .++.. -.-
T Consensus 252 p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~------~e~~~~~~~~~~~~~~l~~~y~aL 325 (371)
T PF14664_consen 252 PNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGF------AEAKSILPHRSSKRPNLVNHYLAL 325 (371)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccc------cccccccCccccccccHHHHHHHH
Confidence 99999999998888776322222111111 111110001110000 0000000 00100 011
Q ss_pred hHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhcc
Q 002091 716 FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT 758 (968)
Q Consensus 716 ~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~ 758 (968)
....++++|.++.|++++.+. ++..+...|...|+.+-
T Consensus 326 ll~ili~~gL~~~L~~li~~~-----~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 326 LLAILIEAGLLEALVELIESS-----EDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHcChHHHHHHHHhcC-----CCchHHHHHHHHHHHHH
Confidence 234567999999999999984 24567777777666543
No 122
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.59 E-value=0.00068 Score=75.81 Aligned_cols=328 Identities=17% Similarity=0.149 Sum_probs=187.4
Q ss_pred ChHHHHHHhcccCCCCcchHHHHHHHHHHhhc----CcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002091 545 AVGPLVDLLLHHSSSSSSLREETATAIMHLAV----STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN 620 (968)
Q Consensus 545 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~----~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~ 620 (968)
.|..++.+|++++ +.++..|+...+.|+. +.+... + ...-..|.+.+....|++.-.++.++.
T Consensus 605 ivStiL~~L~~k~---p~vR~~aadl~~sl~~vlk~c~e~~~--------l--~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 605 IVSTILKLLRSKP---PDVRIRAADLMGSLAKVLKACGETKE--------L--AKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred HHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHhcchHHH--------H--HHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 3455667777766 8899999998888774 111110 0 112234566777888999888888888
Q ss_pred HhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHH
Q 002091 621 ALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEI 700 (968)
Q Consensus 621 ~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~ 700 (968)
.+.+.......+.-+ .|.+|.|..+|++....+..+.+..+..++..+ ++.+..---..+--.|++.|++ .+.+++
T Consensus 672 ~I~sv~~~~~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~-peyi~~rEWMRIcfeLvd~Lks-~nKeiR 747 (975)
T COG5181 672 SIYSVHRFRSMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNS-PEYIGVREWMRICFELVDSLKS-WNKEIR 747 (975)
T ss_pred HHhhhhcccccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHHHHH-hhHHHH
Confidence 776533222111112 478999999999999999999999999888333 3221111111334457777777 467899
Q ss_pred HHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHH
Q 002091 701 ASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQ 780 (968)
Q Consensus 701 ~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~ 780 (968)
.+|...++.++. ++.-..++..|++-|+. .+.+.|-...-+++-.+. -.|-+..|-.
T Consensus 748 R~A~~tfG~Is~------aiGPqdvL~~LlnnLkv------qeRq~RvctsvaI~iVae-----------~cgpfsVlP~ 804 (975)
T COG5181 748 RNATETFGCISR------AIGPQDVLDILLNNLKV------QERQQRVCTSVAISIVAE-----------YCGPFSVLPT 804 (975)
T ss_pred HhhhhhhhhHHh------hcCHHHHHHHHHhcchH------HHHHhhhhhhhhhhhhHh-----------hcCchhhHHH
Confidence 999999998875 11111234444544444 222223222222222221 1355555555
Q ss_pred Hhh---cCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhcc
Q 002091 781 LLE---YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE 857 (968)
Q Consensus 781 lL~---~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~ 857 (968)
++. ..+..+|.-...+++.+-...+.. .... -.-..+.|-+.|.
T Consensus 805 lm~dY~TPe~nVQnGvLkam~fmFeyig~~-------------------------------s~dY--vy~itPlleDAlt 851 (975)
T COG5181 805 LMSDYETPEANVQNGVLKAMCFMFEYIGQA-------------------------------SLDY--VYSITPLLEDALT 851 (975)
T ss_pred HHhcccCchhHHHHhHHHHHHHHHHHHHHH-------------------------------HHHH--HHHhhHHHHhhhc
Confidence 555 345578887777777765322110 0000 0113444556888
Q ss_pred CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHh----cCCChHHHHHHHHHHHHHhcChhhHHHhcccC
Q 002091 858 DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFL----SSPSPKLQEKALDSVERIFRLPEFKQKYGKSA 932 (968)
Q Consensus 858 ~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 932 (968)
+.|+.-|..|+..+..|+ .... ....++.-.|.+++ -.+.|.+++.-.+.++.+. ..++...
T Consensus 852 DrD~vhRqta~nvI~Hl~Lnc~g-------tg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~------~~lg~g~ 918 (975)
T COG5181 852 DRDPVHRQTAMNVIRHLVLNCPG-------TGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFA------TVLGSGA 918 (975)
T ss_pred ccchHHHHHHHHHHHHHhcCCCC-------cccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHH------HHhccHH
Confidence 899999999999999998 3211 11112222344444 3577888877766665442 2233222
Q ss_pred Cch-hhhhcccCCchhhHHHHHHHHHH
Q 002091 933 QMP-LVDLTQRGNSSMKSLSARVLAHL 958 (968)
Q Consensus 933 ~~~-Lv~ll~~~~~~~~~~A~~aL~~L 958 (968)
.+. +.+-+-+.+..+|++=...+..+
T Consensus 919 ~m~Yv~qGLFHPs~~VRk~ywtvyn~m 945 (975)
T COG5181 919 MMKYVQQGLFHPSSTVRKRYWTVYNIM 945 (975)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHhhh
Confidence 222 34445556666666655555444
No 123
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.56 E-value=7.4e-05 Score=55.39 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=35.0
Q ss_pred ccccccCC---CCceecCCchhhhHHHHHHHHhcCCCCCCCCCC
Q 002091 268 CPITRDVM---VDPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (968)
Q Consensus 268 cpi~~~~m---~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~ 308 (968)
||+|.+-+ ..|++++|||+||..|+.++. .....||++++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 89999998 468899999999999999998 55678999974
No 124
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.55 E-value=0.00025 Score=75.99 Aligned_cols=52 Identities=29% Similarity=0.493 Sum_probs=45.9
Q ss_pred ccccccccCCCCceecC-CchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccC
Q 002091 266 FYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn 318 (968)
+.|.|++++-++||+-+ +||.|||+-|++++.+ +.+||+|++++...+++|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence 47999999999999975 7999999999999965 5689999999988777763
No 125
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0019 Score=73.91 Aligned_cols=217 Identities=15% Similarity=0.214 Sum_probs=157.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHH
Q 002091 597 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIR 676 (968)
Q Consensus 597 i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~ 676 (968)
-+-++-|++++.|-+++.|+.+|..++-. -+ .+++ ...|.|++-|.++|+.|+-+|+.+++.|+ ...+.+.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLk--YP---eAlr--~~FprL~EkLeDpDp~V~SAAV~VICELA-rKnPkny- 216 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLK--YP---EALR--PCFPRLVEKLEDPDPSVVSAAVSVICELA-RKNPQNY- 216 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHh--hh---HhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHH-hhCCccc-
Confidence 45567788889999999999999998732 11 1233 36899999999999999999999999999 3333221
Q ss_pred HhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHh
Q 002091 677 EHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALR 755 (968)
Q Consensus 677 ~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~ 755 (968)
-...|.+.++|-..++.-+....+.++++|+- .+...+.+ +++|.+++.+. ....+..+++.++.
T Consensus 217 ----L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL-----ieplt~li~sT-----~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 217 ----LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL-----IEPITELMEST-----VAMSLLYECVNTVV 282 (877)
T ss_pred ----ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh-----hhHHHHHHHhh-----HHHHHHHHHHHHhe
Confidence 13567888888877666677888999999998 87776654 78999999984 34556666666654
Q ss_pred hc--cCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCC
Q 002091 756 RF--TAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 833 (968)
Q Consensus 756 ~L--~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~ 833 (968)
.. ..+ -++.-..+. -.+..|-.++.+.|+.++.-+..++..+....+.
T Consensus 283 a~s~s~g-~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~--------------------------- 332 (877)
T KOG1059|consen 283 AVSMSSG-MSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--------------------------- 332 (877)
T ss_pred eehhccC-CCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---------------------------
Confidence 33 333 112111111 1367788888899999999999999999843321
Q ss_pred ccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhc
Q 002091 834 LCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE 876 (968)
Q Consensus 834 ~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~ 876 (968)
.+. .--+..+++|.+.|..+|..|+.-|..+.+
T Consensus 333 ---------~Vq-a~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 333 ---------AVQ-AHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred ---------HHH-HhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 010 124567899999999999999999999983
No 126
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.52 E-value=0.019 Score=69.02 Aligned_cols=457 Identities=14% Similarity=0.129 Sum_probs=264.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhcc-CCchhHHHHHhCCchHHHHHHHhcCCH-HHHHHHHHHHHHhcc--C-chhhHH
Q 002091 424 LLLVTMASSDDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSAGPE-SVKMRMATTLAEMEL--T-DHHKAS 498 (968)
Q Consensus 424 ~~Lv~lL~s~~~~~~~~a~~~L~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~~~~-~~~~~aa~~L~~L~~--~-~~~~~~ 498 (968)
+.|-.+.......++++++..+...+ .+++... . ..+-+++..|..++. ..+..++.++..+.. . +..|.
T Consensus 162 ~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~-~---~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~- 236 (759)
T KOG0211|consen 162 PPLELLATVEETGVREKAVESLLKVAVGLPKEKL-R---EHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR- 236 (759)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH-H---HHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH-
Confidence 34444444556677888998888876 3333222 1 112345555555432 334455555555532 2 22332
Q ss_pred HhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc
Q 002091 499 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST 578 (968)
Q Consensus 499 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 578 (968)
..-+..-++.++.++.++..++.-+++++..-+. .....+.++.+.++..+.. ..+++.|...+.++...-
T Consensus 237 ----elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddq---dsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 237 ----ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQ---DSVREAAVESLVSLLDLL 307 (759)
T ss_pred ----HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcch---hhHHHHHHHHHHHHHHhc
Confidence 2234444566777899999999999999864333 6677789999999998766 678999998888887632
Q ss_pred ccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHH
Q 002091 579 MYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRAN 658 (968)
Q Consensus 579 ~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~ 658 (968)
.... =......+.++...+..+..++.........++..-+. -.....-++....+++....+.+.+
T Consensus 308 ~~~~--------d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-----~~~~~~~~~~~~~l~~~~~~e~r~a 374 (759)
T KOG0211|consen 308 DDDD--------DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-----SATRTQLVPPVSNLLKDEEWEVRYA 374 (759)
T ss_pred CCch--------hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc-----ccCcccchhhHHHHhcchhhhhhHH
Confidence 2110 00123456677777777778888777777666532111 0111234666777777766677777
Q ss_pred HHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCC
Q 002091 659 AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGR 737 (968)
Q Consensus 659 a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~ 737 (968)
++.-...+....+......+.....++.+-.++.. .+..++.+.+..+.++.- .+ +.=.-...++.++..+++
T Consensus 375 ~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~d-- 448 (759)
T KOG0211|consen 375 IAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKD-- 448 (759)
T ss_pred hhcchHHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCC---cCcCccccChhhhhhcch--
Confidence 66655555433332223333344455555555544 455566665555555543 21 000011234555556665
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 002091 738 QNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGF 817 (968)
Q Consensus 738 ~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~ 817 (968)
....++.+..+.+..+-.. ++-..-.......+|.++.+-.....+++.+..+.+..++....
T Consensus 449 ----e~~~V~lnli~~ls~~~~v-~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~------------ 511 (759)
T KOG0211|consen 449 ----EDPIVRLNLIDKLSLLEEV-NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG------------ 511 (759)
T ss_pred ----hhHHHHHhhHHHHHHHHhc-cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh------------
Confidence 5567777777666554443 33333344455678888888877778888888888888873221
Q ss_pred cccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCcHHH
Q 002091 818 WCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDR 895 (968)
Q Consensus 818 ~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~ 895 (968)
..+.....-+.+...+.+....++++|..-+..++ .|..| .....++.
T Consensus 512 -----------------------~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w-------~~~~~i~k 561 (759)
T KOG0211|consen 512 -----------------------VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW-------ARLEEIPK 561 (759)
T ss_pred -----------------------hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch-------hHHHhhHH
Confidence 00111112222333445556678888888888887 33222 22233555
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHhhc
Q 002091 896 MVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVL 961 (968)
Q Consensus 896 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~ 961 (968)
+.....+++-..+...+..+.-|...- ....+...-.+.+.++..+..+++|-.+++.|..+...
T Consensus 562 ~L~~~~q~~y~~R~t~l~si~~la~v~-g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 562 LLAMDLQDNYLVRMTTLFSIHELAEVL-GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHHhcCcccchhhHHHHHHHHHHHHh-ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 555555656667777766666332100 01111222346788888999999999999999877554
No 127
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.42 E-value=0.0034 Score=65.20 Aligned_cols=258 Identities=14% Similarity=0.076 Sum_probs=158.9
Q ss_pred hhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-CCHHHHHHHHHHHhcCCCCHHhHHHHHH-cC
Q 002091 647 LCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLPEVPQFTQWLLD-AG 724 (968)
Q Consensus 647 ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~~Al~~L~nL~~~~~~~~~l~~-~g 724 (968)
+++.=++-.+.-|+.++.++......+ .....+...-..++++++.. .+.+++...+-+++-|+.++.+.+-+-. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R-~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKR-KIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333334456777888888886322222 22223445667788888765 4578899999999999998887754432 23
Q ss_pred CHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc---CChHHHHHHHHHHhhhc
Q 002091 725 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY---GTTLTKEHAATSLARFS 801 (968)
Q Consensus 725 ~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~---~~~~v~~~Aa~aL~nl~ 801 (968)
.+.-++.+++.. ....+-.-+++++.|++..........+.-.|-+..-++.|.. .|.+++...-..=..+.
T Consensus 236 li~dli~iVk~~-----~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 236 LINDLIAIVKER-----AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 456667777663 3566777889999999874233444444444544444555543 25566655444444444
Q ss_pred ccCCCCCCCC----CCCCcccccCCCCCcccccCC--CccCcccchHHhhc--CChHHHHhhccCCChh-hhHHHHHHHH
Q 002091 802 KNSLGLSRPI----PKRKGFWCFSPPPEIGCQVHG--GLCGIESSFCLLEA--NAVRPLVRVLEDPDHG-ACEASLDALV 872 (968)
Q Consensus 802 ~~s~~l~~~~----~~~~~~~~~~~~~~~~c~~h~--~~c~~~~~~~l~~~--g~i~~Lv~lL~~~~~~-v~~~al~aL~ 872 (968)
.++..++-.. .-..|.+ .+.|.|. +.+ ..+...+.+. ..+..|..+|+.++++ ....|+.-+.
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l-------~wSp~H~~~dFW-s~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~ 382 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRL-------EWSPYHHKKDFW-STNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIF 382 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcc-------cCCCcccccCch-hhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHH
Confidence 4333322110 0011111 1223331 111 1233444433 5788899999988777 4445677777
Q ss_pred hhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 002091 873 TLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 873 ~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 920 (968)
.+. ....++...+.+.||-+.|.++++|++++|+-.|+.++..+..
T Consensus 383 ~~V--r~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 383 QLV--RASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHH--HhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 776 1122678889999999999999999999999999999988754
No 128
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=9.1e-05 Score=74.70 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=47.8
Q ss_pred CCCCCCcccccccccCCCCceecCCchhhhHHHHHH-HHhcCCCCCCCCCCcCCCC
Q 002091 259 PLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEK-WFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 259 ~~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~-~~~~~~~~CP~t~~~l~~~ 313 (968)
|+.|..++.|+||.+.+.+|+-++|||-||=.||-. |-.+...+||.|++...+.
T Consensus 209 pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 209 PFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred CcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 444568999999999999999999999999999998 9877667899999876554
No 129
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.38 E-value=0.0068 Score=67.70 Aligned_cols=232 Identities=18% Similarity=0.220 Sum_probs=155.8
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-CCHHHHHHHHHHHhcCCCCHHhHHH
Q 002091 641 IPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLPEVPQFTQW 719 (968)
Q Consensus 641 i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~~Al~~L~nL~~~~~~~~~ 719 (968)
.+.+..++-+++.+++..+.++++.+.. +.+....+.+.+.--.++.-|... .....+..|+..+..+..-....+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~--d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~- 103 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS--DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK- 103 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc--CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc-
Confidence 3344434445559999999999999962 344556666666555566666554 456678899988877765111111
Q ss_pred HHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhh
Q 002091 720 LLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLAR 799 (968)
Q Consensus 720 l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~n 799 (968)
....|++..++.+..+ +++.++..|+.+|+.++-. +|+ .+..+|++..|.+.+.++...+....+.++-.
T Consensus 104 ~~~~~vvralvaiae~------~~D~lr~~cletL~El~l~-~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEH------EDDRLRRICLETLCELALL-NPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLY 173 (371)
T ss_pred cCCHHHHHHHHHHHhC------CchHHHHHHHHHHHHHHhh-CHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 1245677888888888 6788999999999999987 665 56789999999999998877777777888777
Q ss_pred hcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcC----ChHHHHhhc---cCCCh--hhhHHHHHH
Q 002091 800 FSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEAN----AVRPLVRVL---EDPDH--GACEASLDA 870 (968)
Q Consensus 800 l~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g----~i~~Lv~lL---~~~~~--~v~~~al~a 870 (968)
+-.+. +.+.++...- .+.|+.+.- ..++. +....+..+
T Consensus 174 lLd~p---------------------------------~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~a 220 (371)
T PF14664_consen 174 LLDSP---------------------------------RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKA 220 (371)
T ss_pred HhCCc---------------------------------chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence 76311 1111121111 233333331 11222 345667777
Q ss_pred HHhhh-cccccchhhHHHH--hcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh
Q 002091 871 LVTLI-EGERLQNGSKVLE--DANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP 922 (968)
Q Consensus 871 L~~L~-~~~~~~~~~~~i~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 922 (968)
+..+. .. +|...+. +.++++.|+..+..+++++++..+.++..+++.+
T Consensus 221 i~~~LrsW----~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 221 ISTLLRSW----PGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHHhcC----CceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 88877 33 2333222 3368999999999999999999999999997643
No 130
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.011 Score=69.36 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=48.0
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCcc
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~p 317 (968)
.-+.||.|..=.+|-|++.|||.||-.||+.-+......||.|+..|.+.++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 347899999989999999999999999999998877889999999997766554
No 131
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.036 Score=60.47 Aligned_cols=263 Identities=13% Similarity=0.138 Sum_probs=180.9
Q ss_pred HHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCc------h----hHHHHHhCCchH
Q 002091 396 RKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSD------D----NVVQMAKANYFK 465 (968)
Q Consensus 396 ~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~------~----n~~~i~~~g~v~ 465 (968)
....+..+..++.-|+....+.+ ..+++.|+.+|.+++.++....+..|..|...+ + -...+++.+.++
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lve-ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla 179 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVE-LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA 179 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHH-hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence 34566677778888998888888 689999999999999999999999999997422 1 144567888888
Q ss_pred HHHHHHhcCCHHHH------HHHHHHHHHh-ccCchhhHHHhhcCchHHHHHhhhcC--CHHHHHHHHHHHHHhcC-CCc
Q 002091 466 HLLQRLSAGPESVK------MRMATTLAEM-ELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSS-VPQ 535 (968)
Q Consensus 466 ~Lv~~L~~~~~~~~------~~aa~~L~~L-~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~-~~~ 535 (968)
.|+.-+..-+..++ .+..+++-++ ...++....+++.|.+..|+.-+... -..-+..|..+|.-+-. ..+
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e 259 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE 259 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch
Confidence 88887765444444 3455666666 34567777778888888887755432 34567788888888875 445
Q ss_pred cHHHHHHcCChHHHHHHhccc---C---CCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCH
Q 002091 536 NGLQMIKEGAVGPLVDLLLHH---S---SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGP 609 (968)
Q Consensus 536 ~~~~i~~~g~v~~Lv~lL~~~---~---~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~ 609 (968)
|+.....-.++..+++-+.-. + .+..++.++...+|+.+...+.+++. .+.. .++....-+++. ..
T Consensus 260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~------Fl~~-EGlqLm~Lmlr~-Kk 331 (536)
T KOG2734|consen 260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRER------FLKG-EGLQLMNLMLRE-KK 331 (536)
T ss_pred hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhh------hhcc-ccHHHHHHHHHH-HH
Confidence 888888889999998876421 1 11234566777777777777766664 3333 333333333332 44
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhc-cC---------ChhHHHHHHHHHHHhc
Q 002091 610 NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE-HD---------NENVRANAVKLFCCLV 667 (968)
Q Consensus 610 ~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~-~~---------~~~v~~~a~~~L~~Ls 667 (968)
..+..++++|-....++.+.+....+.+..++..+..+.- .+ ..+.-+..+..|+.+-
T Consensus 332 ~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 332 VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 5667789999998888888787777887777777766543 11 2455666777666664
No 132
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.048 Score=61.18 Aligned_cols=288 Identities=15% Similarity=0.093 Sum_probs=159.5
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCC
Q 002091 505 LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESS 584 (968)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~ 584 (968)
.|.|-.+|++.-..+...+++++..++...- ....++ ..|..|-.+|.+.. ...+..|+.+|..|+.....+-
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~-~~vs~L~~fL~s~r---v~~rFsA~Riln~lam~~P~kv-- 338 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFVD-QTVSSLRTFLKSTR---VVLRFSAMRILNQLAMKYPQKV-- 338 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHHH-HHHHHHHHHHhcch---HHHHHHHHHHHHHHHhhCCcee--
Confidence 4555566766667788888888888764211 122222 24566667777665 6678899999999987432211
Q ss_pred CCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHH
Q 002091 585 QTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 664 (968)
Q Consensus 585 ~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~ 664 (968)
.+. -+.+-+++++.+..+-.+|+.+|..-. ....+.. .+..+..++++-++..+.-++.+++
T Consensus 339 ----~vc-----N~evEsLIsd~Nr~IstyAITtLLKTG---t~e~idr------Lv~~I~sfvhD~SD~FKiI~ida~r 400 (898)
T COG5240 339 ----SVC-----NKEVESLISDENRTISTYAITTLLKTG---TEETIDR------LVNLIPSFVHDMSDGFKIIAIDALR 400 (898)
T ss_pred ----eec-----ChhHHHHhhcccccchHHHHHHHHHcC---chhhHHH------HHHHHHHHHHhhccCceEEeHHHHH
Confidence 111 123445555666666666666665532 2222211 2233333444334444444444555
Q ss_pred HhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCch
Q 002091 665 CLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNR 743 (968)
Q Consensus 665 ~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~ 743 (968)
.|+ ...+.. ....+..|...|.....-+.+..++.++..... .++.++.. ++.|..++.++
T Consensus 401 sLs-l~Fp~k-----~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc------- 462 (898)
T COG5240 401 SLS-LLFPSK-----KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC------- 462 (898)
T ss_pred HHH-hhCcHH-----HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc-------
Confidence 554 112211 112345555555554555666666666666655 55554433 45666666663
Q ss_pred hHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCC
Q 002091 744 FQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPP 823 (968)
Q Consensus 744 ~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~ 823 (968)
+.-+-++.+|+-|... .|.... -...+..+..-+--.+..+|..|..||..++.+-.. +
T Consensus 463 -ey~~I~vrIL~iLG~E-gP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d---~------------- 521 (898)
T COG5240 463 -EYHQITVRILGILGRE-GPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD---V------------- 521 (898)
T ss_pred -chhHHHHHHHHHhccc-CCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc---c-------------
Confidence 2234555666655544 111000 011233333333345678999999999888853321 1
Q ss_pred CCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 824 PEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 824 ~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
.....+...|-++|.+.|.+||..|.-+|.++-
T Consensus 522 -------------------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 -------------------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred -------------------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 112235667788999999999999999999986
No 133
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.24 E-value=0.0012 Score=57.48 Aligned_cols=86 Identities=27% Similarity=0.397 Sum_probs=70.3
Q ss_pred hHHHHHHh-hcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHH
Q 002091 775 IPKLVQLL-EYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLV 853 (968)
Q Consensus 775 i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv 853 (968)
+|.|++.| +++++.+|..++++|+++.. ..+++.|+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------------------------------------------~~~~~~L~ 37 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-------------------------------------------PEAIPALI 37 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-------------------------------------------HHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------------------------------------------HhHHHHHH
Confidence 57899989 77899999999999997641 23799999
Q ss_pred hhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcC-CChHHHHHHHHHHH
Q 002091 854 RVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSS-PSPKLQEKALDSVE 916 (968)
Q Consensus 854 ~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~ 916 (968)
.++.++++.|+..|+.+|..+- +..+++.|.+++.+ .+..++..|...|.
T Consensus 38 ~~l~d~~~~vr~~a~~aL~~i~-------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 38 ELLKDEDPMVRRAAARALGRIG-------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHHCCH-------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 9999999999999999999884 23368889998865 45667888888763
No 134
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.21 E-value=0.00024 Score=79.82 Aligned_cols=68 Identities=25% Similarity=0.452 Sum_probs=57.8
Q ss_pred CCCcccccccccCCCCcee-cCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCcc-CHhHHHHHHHHHh
Q 002091 262 PLQSFYCPITRDVMVDPVE-TSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP-NKTLRQSIEEWKD 330 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~p-n~~l~~~I~~w~~ 330 (968)
+.+++.||+|..++.||+. +.|||.||+.||.+|+.. +..||.+.+.+......| ....+..+..|.-
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPI 87 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccc
Confidence 4567999999999999999 499999999999999977 889999999887666665 3456888888743
No 135
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.16 E-value=0.0015 Score=56.81 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=70.4
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhh
Q 002091 423 ILLLVTMA-SSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE 501 (968)
Q Consensus 423 i~~Lv~lL-~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~ 501 (968)
||.|+..| +++++.++..|+.+|.++- ....++.|+.+++++++.+|..|+.+|..+ ++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 8899999999999998652 224578999999999999999999999776 34
Q ss_pred cCchHHHHHhhhcC-CHHHHHHHHHHHH
Q 002091 502 GNVLGPLLHLVSRG-DIQMKKVAVKALR 528 (968)
Q Consensus 502 ~g~i~~Lv~lL~~~-~~~~~~~a~~aL~ 528 (968)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 56889999999875 5567888988874
No 136
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.13 E-value=0.0053 Score=58.59 Aligned_cols=108 Identities=23% Similarity=0.355 Sum_probs=83.2
Q ss_pred cHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002091 14 PASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECS 93 (968)
Q Consensus 14 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~ 93 (968)
++++|+..+++.+.... ..|..+.+|..-++.|.|+++||...+..++.....-++.|...|++++.|++.|+
T Consensus 14 ~~~eLlk~v~~~~~k~~-------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~s 86 (147)
T PF05659_consen 14 VFGELLKAVIDASKKSL-------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCS 86 (147)
T ss_pred HHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 45556655555444322 23667788999999999999999877665555547889999999999999999998
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHhc-CCCCCC
Q 002091 94 KRNKVYLLMNCRAIVKRLKDTAREISQALG-ILPLAS 129 (968)
Q Consensus 94 ~~Sklyll~~~~~~~~~~~~~~~~~~~~l~-~~p~~~ 129 (968)
+.+ -|-++.-..+..+++++-.+|.+.++ .+|.+.
T Consensus 87 k~~-r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~ 122 (147)
T PF05659_consen 87 KVR-RWNLYKKPRYARKIEELEESLRRFIQVDLQLHQ 122 (147)
T ss_pred ccc-HHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHH
Confidence 775 46666888899999999999999888 356433
No 137
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.062 Score=58.71 Aligned_cols=243 Identities=17% Similarity=0.198 Sum_probs=157.3
Q ss_pred HHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc------hh----hHHHhhcCchHHHH
Q 002091 440 DAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD------HH----KASLLEGNVLGPLL 509 (968)
Q Consensus 440 ~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~------~~----~~~i~~~g~i~~Lv 509 (968)
..+.-+.-++.-+.--..+++.++++.|+.+|.+.+.++-......|..|.-.| +. -..+++.++++.|+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 344556666666666677889999999999999999999888888888885432 21 22566788999999
Q ss_pred HhhhcCC------HHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccccc
Q 002091 510 HLVSRGD------IQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 582 (968)
Q Consensus 510 ~lL~~~~------~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 582 (968)
+-+..-+ .....+++..+-|+.. .+..+..+++.|.+..|+.-+..... ...-+.+|..+|+.+...+....
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~-f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAA-FDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccC-cchhHHHHHHHHHHHhccCchhh
Confidence 8776432 3566778888999985 67788889999999988876654321 24568889999988876543211
Q ss_pred CCCCccccccchhHHHHHHHhhc---cCC---HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHH
Q 002091 583 SSQTPVTLLESDKEIFMLFSLIN---LTG---PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVR 656 (968)
Q Consensus 583 ~~~~~~~il~~~~~i~~l~~ll~---~~~---~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~ 656 (968)
..+..-+++..++.-+. ..+ ++-++..-..+-.||..-..++.+..+....++....-+++. ....+
T Consensus 262 ------~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr 334 (536)
T KOG2734|consen 262 ------KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSR 334 (536)
T ss_pred ------hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhh
Confidence 24555556666555443 222 333343333333344332334445566665667655555544 55677
Q ss_pred HHHHHHHHHhccCCCh--hHHHHhhccccHHHHHHHh
Q 002091 657 ANAVKLFCCLVDDGDE--AIIREHVGQKCLETLVTII 691 (968)
Q Consensus 657 ~~a~~~L~~Ls~~~~~--~~~~~~~~~~~i~~Lv~lL 691 (968)
..++++|-... .+++ +++..+++..++..+..+.
T Consensus 335 ~SalkvLd~am-~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 335 GSALKVLDHAM-FGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred hhHHHHHHHHH-hCCCchHHHHHHHHHHhHHHHHHHH
Confidence 78888888876 3333 5555666665665555544
No 138
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.09 E-value=0.00055 Score=69.36 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=56.9
Q ss_pred ccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCc-CCCCCCccCHhHHHHHHHHHhh
Q 002091 266 FYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTV-LDTSILRPNKTLRQSIEEWKDR 331 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~-l~~~~l~pn~~l~~~I~~w~~~ 331 (968)
+.||+|+.|++.|+-+ .|||+||..||+..+-...+.||.|... .--..|.|++..+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999998 6799999999999887788999999763 2334688999988889888763
No 139
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.07 E-value=0.0002 Score=59.70 Aligned_cols=65 Identities=26% Similarity=0.490 Sum_probs=48.1
Q ss_pred CCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHHhhhc
Q 002091 300 NNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDLCQQR 366 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~~~~~ 366 (968)
.+.||+|+..| +|+.+..++++ |..|++|...++ .++|.++.++...+..++. +|+. |++|+.++
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~-~~~P~t~~~l~~~~l~pn~-~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNG-GTDPFTRQPLSESDLIPNR-ALKSAIEEWCAEN 71 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTS-SB-TTT-SB-SGGGSEE-H-HHHHHHHHHHHHC
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCC-CCCCCCCCcCCcccceECH-HHHHHHHHHHHHc
Confidence 57899999999 66777777999 999999999854 5799999998888888876 4555 99998754
No 140
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.0068 Score=72.20 Aligned_cols=233 Identities=18% Similarity=0.186 Sum_probs=169.4
Q ss_pred cHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCC
Q 002091 683 CLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT 761 (968)
Q Consensus 683 ~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~ 761 (968)
-+|.++++|-+. --+..|+..|+.... .+-....-+.-|++|.+++||++ +..+++-..+.+-..+-+-
T Consensus 473 QLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS------~a~ELrpiLVFIWAKILAv- 542 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS------SARELRPILVFIWAKILAV- 542 (1387)
T ss_pred hcchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc------chHhhhhhHHHHHHHHHhc-
Confidence 345555555441 134567778877777 66666777788999999999999 5677787777777777775
Q ss_pred CHHHHHHHHHcCChHHHHHHhhcC---ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcc
Q 002091 762 NLEWQKRAAEAGVIPKLVQLLEYG---TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIE 838 (968)
Q Consensus 762 ~~~~~~~~~~~g~i~~Lv~lL~~~---~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~ 838 (968)
++.++-.+++.++....+..|..+ +++-|..||..|+.+..+-+ .
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~--------------------------------l 590 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK--------------------------------L 590 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc--------------------------------h
Confidence 888998999999888888888863 56889999999999984311 1
Q ss_pred cchHHhhcCChHHHHhhccCC-ChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHH
Q 002091 839 SSFCLLEANAVRPLVRVLEDP-DHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVER 917 (968)
Q Consensus 839 ~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 917 (968)
......+.+.|..-+..|.++ .+-.+.=.+-+|..|- ++....+-.=.+.++.++|..++.++.++|+.+|+.+|..
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW--~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW--EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh--hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 122335666777666777664 4557777777788877 2233555555678899999999999999999999999999
Q ss_pred HhcCh-----h----hHHHhc------------ccCCchhhhhcccCCchhhHHHHHHHHHHh
Q 002091 918 IFRLP-----E----FKQKYG------------KSAQMPLVDLTQRGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 918 l~~~~-----~----~~~~~~------------~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~ 959 (968)
++... + ..+.+. ..+.+.++.++++|++-++...+-+|.+..
T Consensus 669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 98742 1 111111 112357888999999999999888888764
No 141
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.0069 Score=67.20 Aligned_cols=184 Identities=12% Similarity=0.057 Sum_probs=126.1
Q ss_pred HHHHHHHhccCCch-hHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhhHHHhhcCchHHHHHhhhcCCH
Q 002091 440 DAQELLENLSFSDD-NVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKASLLEGNVLGPLLHLVSRGDI 517 (968)
Q Consensus 440 ~a~~~L~~Ls~~~~-n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~ 517 (968)
.++..|..++.+-. -|.-+.+...+++|++.|+.+...+.--+...+.++.. ....+..+.+.|.|..|++++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34455555543322 25556678889999999998655555556666667633 44556678889999999999999899
Q ss_pred HHHHHHHHHHHHhcCCCcc--HHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccC-CCCccccccch
Q 002091 518 QMKKVAVKALRNLSSVPQN--GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQES-SQTPVTLLESD 594 (968)
Q Consensus 518 ~~~~~a~~aL~~Ls~~~~~--~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~-~~~~~~il~~~ 594 (968)
..+.+..|+|+.+.-+.++ +-+....-++..++++.+++. -.++..++.+|.|+..+..-.+. .+.-..+.-..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc---~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC---FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc---cccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 9999999999999854333 455667778899999998776 67899999999999864322111 11122222233
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhccCC
Q 002091 595 KEIFMLFSLINLTGPNVQQRILQTFNALCRSP 626 (968)
Q Consensus 595 ~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~ 626 (968)
-....++..+...+|-....-+..|.+++.+.
T Consensus 565 ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d 596 (743)
T COG5369 565 YLFKRLIDKYEENNPMEILEGCYILVRNAACD 596 (743)
T ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHhcc
Confidence 34556666777777765555677787777653
No 142
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.02 E-value=0.00048 Score=57.34 Aligned_cols=39 Identities=38% Similarity=0.807 Sum_probs=31.8
Q ss_pred ccccccCCCCc-------------eecCCchhhhHHHHHHHHhcCCCCCCCCC
Q 002091 268 CPITRDVMVDP-------------VETSSGQTFERSAIEKWFSDGNNLCPLTM 307 (968)
Q Consensus 268 cpi~~~~m~dp-------------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~ 307 (968)
|+||++-|.|| +..+|||.|-..||.+|+.. +.+||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999554 34579999999999999965 45999985
No 143
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.91 E-value=1.1 Score=50.70 Aligned_cols=445 Identities=14% Similarity=0.125 Sum_probs=205.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCH-HHHHHHHHHHHHhccCchhhHHHhhcC
Q 002091 425 LLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPE-SVKMRMATTLAEMELTDHHKASLLEGN 503 (968)
Q Consensus 425 ~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~-~~~~~aa~~L~~L~~~~~~~~~i~~~g 503 (968)
.+..+.++.|+..+...-.++..|+.-.+.... +...+++-+..|.+ .+|..|.+.|+..- +..
T Consensus 69 ~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm-----~tssiMkD~~~g~~~~~kp~AiRsL~~Vi----------d~~ 133 (898)
T COG5240 69 AILKLFQHKDLYLRQCVYSAIKELSKLTEDVLM-----GTSSIMKDLNGGVPDDVKPMAIRSLFSVI----------DGE 133 (898)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcchhhhH-----HHHHHHHhhccCCccccccHHHHHHHHhc----------Ccc
Confidence 355566788888888777777777643332211 12334555666644 67777877776652 122
Q ss_pred chHHHHHhhh----cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhccc---------CCCCcchHHHHHHH
Q 002091 504 VLGPLLHLVS----RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH---------SSSSSSLREETATA 570 (968)
Q Consensus 504 ~i~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~---------~~~~~~~~~~a~~~ 570 (968)
.++..=++|. +..+..+..|+-.-+.|--...+...---...-++.+++-+.+ +...+-.+.+|++.
T Consensus 134 tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGl 213 (898)
T COG5240 134 TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGL 213 (898)
T ss_pred hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHH
Confidence 2223333333 3345556666666566643222211110111112222222111 11224457777777
Q ss_pred HHHhhcCcccccCCCCccccccchhHHHHHHHhhccCC----HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHH
Q 002091 571 IMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTG----PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQ 646 (968)
Q Consensus 571 L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~----~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ 646 (968)
|..+-..+. -+.-.++..+.... .-..-..+++...+.. .+...+. ...|.|-.
T Consensus 214 Lyq~kr~dk---------------ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~--~n~q~~~-----q~rpfL~~ 271 (898)
T COG5240 214 LYQSKRTDK---------------MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLK--ENSQALL-----QLRPFLNS 271 (898)
T ss_pred HHHHhcccH---------------HHHHHHHHHhhcccccccchhheehHHHHHHHHH--hChHHHH-----HHHHHHHH
Confidence 776654221 01122233222111 1011112233333321 1222111 13455666
Q ss_pred hhccCChhHHHHHHHHHHHhccCC-ChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcC
Q 002091 647 LCEHDNENVRANAVKLFCCLVDDG-DEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAG 724 (968)
Q Consensus 647 ll~~~~~~v~~~a~~~L~~Ls~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g 724 (968)
.+++.-+.+...++++++.++... .++.. ...+..|-.+|.+. ....+-.|+++|..|+. .++... -
T Consensus 272 wls~k~emV~lE~Ar~v~~~~~~nv~~~~~-----~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~-----v 340 (898)
T COG5240 272 WLSDKFEMVFLEAARAVCALSEENVGSQFV-----DQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVS-----V 340 (898)
T ss_pred HhcCcchhhhHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceee-----e
Confidence 667777889999999998887222 12111 13455666666663 45678899999999886 443211 0
Q ss_pred CHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccC
Q 002091 725 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 725 ~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s 804 (968)
+-+-+-.++.+ .+..+...|+-.|. ..++++....+ +..+..++++-+...+.-+..++..|+..=
T Consensus 341 cN~evEsLIsd------~Nr~IstyAITtLL---KTGt~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 341 CNKEVESLISD------ENRTISTYAITTLL---KTGTEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred cChhHHHHhhc------ccccchHHHHHHHH---HcCchhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 11122233333 22223333333333 22244444443 233444444433444444444444444211
Q ss_pred CCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcC-------ChHHHHhhccCCChhhhHHHHHHHHhhh-c
Q 002091 805 LGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEAN-------AVRPLVRVLEDPDHGACEASLDALVTLI-E 876 (968)
Q Consensus 805 ~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g-------~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~ 876 (968)
+. +.....-|. ..-|.+.| +++.+.++.. .+|+.++.|+.-|+.+. +
T Consensus 407 p~------k~~s~l~FL------------------~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIED 461 (898)
T COG5240 407 PS------KKLSYLDFL------------------GSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIED 461 (898)
T ss_pred cH------HHHHHHHHH------------------HHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhh
Confidence 00 000000000 00011111 2333333333 34556666777777766 3
Q ss_pred ccccchhhH----HHHhc--------CcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccC-CchhhhhcccC
Q 002091 877 GERLQNGSK----VLEDA--------NAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSA-QMPLVDLTQRG 943 (968)
Q Consensus 877 ~~~~~~~~~----~i~~~--------~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~Lv~ll~~~ 943 (968)
.+.. +... .+-+. ..+..+.+-+--.|.-|+.+|+.+|.++.-..+ +.+.... ...|-..+.+.
T Consensus 462 cey~-~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~--d~~~~~sv~~~lkRclnD~ 538 (898)
T COG5240 462 CEYH-QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS--DVVSPQSVENALKRCLNDQ 538 (898)
T ss_pred cchh-HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc--ccccHHHHHHHHHHHhhcc
Confidence 3211 1111 01111 122333333334567788888888887753322 1111111 22366678889
Q ss_pred CchhhHHHHHHHHHHh
Q 002091 944 NSSMKSLSARVLAHLN 959 (968)
Q Consensus 944 ~~~~~~~A~~aL~~L~ 959 (968)
|+++|.+|+-+|+.+.
T Consensus 539 DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 539 DDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 9999999999998875
No 144
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.62 Score=54.04 Aligned_cols=299 Identities=15% Similarity=0.192 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCC--chhHHHHHh-CCchHHHHHHHh
Q 002091 396 RKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFS--DDNVVQMAK-ANYFKHLLQRLS 472 (968)
Q Consensus 396 ~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~--~~n~~~i~~-~g~v~~Lv~~L~ 472 (968)
+..|+..|+.+-++++.... .+.+..++.+|...+..+...+...+..+++. +..+..+-. -+.+..++..-.
T Consensus 166 qkaALclL~L~r~spDl~~~----~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~ 241 (938)
T KOG1077|consen 166 QKAALCLLRLFRKSPDLVNP----GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVG 241 (938)
T ss_pred HHHHHHHHHHHhcCccccCh----hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcc
Confidence 44444444444446654332 46778889999877777766676666666632 233433211 111111111110
Q ss_pred ----------cCCHHHHHHHHHHHHHhcc--CchhhHHHhhcCchHHHHHhhhc----CCH---HHHHHHHHHHHHhcC-
Q 002091 473 ----------AGPESVKMRMATTLAEMEL--TDHHKASLLEGNVLGPLLHLVSR----GDI---QMKKVAVKALRNLSS- 532 (968)
Q Consensus 473 ----------~~~~~~~~~aa~~L~~L~~--~~~~~~~i~~~g~i~~Lv~lL~~----~~~---~~~~~a~~aL~~Ls~- 532 (968)
-+.|=.+.....+|...-. ++..|..+. .+...++...+. .++ .++.+.+--..+|+.
T Consensus 242 t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h 319 (938)
T KOG1077|consen 242 TSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIH 319 (938)
T ss_pred cchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHH
Confidence 1234466667777777632 223343332 233333333331 121 222233333334443
Q ss_pred CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhc-cCCHHH
Q 002091 533 VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNV 611 (968)
Q Consensus 533 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~-~~~~~~ 611 (968)
.++....+.+ ++..|-.+|.+.. ..++.-|+..+..|+++....+. +.. -...++..++ ..|..+
T Consensus 320 ~D~e~~ll~~--~~~~Lg~fls~rE---~NiRYLaLEsm~~L~ss~~s~da-------vK~--h~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 320 LDSEPELLSR--AVNQLGQFLSHRE---TNIRYLALESMCKLASSEFSIDA-------VKK--HQDTIINSLKTERDVSI 385 (938)
T ss_pred cCCcHHHHHH--HHHHHHHHhhccc---ccchhhhHHHHHHHHhccchHHH-------HHH--HHHHHHHHhccccchHH
Confidence 3344444444 5788888888776 77899999999999987543322 211 1445666666 778899
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH-------------HHh
Q 002091 612 QQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII-------------REH 678 (968)
Q Consensus 612 ~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~-------------~~~ 678 (968)
+..++..|..+|.....+. ++.-|++.+.+-+..+++..+.-.+-|++....+.- ...
T Consensus 386 rrravDLLY~mcD~~Nak~---------IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~ 456 (938)
T KOG1077|consen 386 RRRAVDLLYAMCDVSNAKQ---------IVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDY 456 (938)
T ss_pred HHHHHHHHHHHhchhhHHH---------HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccc
Confidence 9999999999996432222 456677888777777777666544545421111100 011
Q ss_pred hccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCC
Q 002091 679 VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGA 725 (968)
Q Consensus 679 ~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~ 725 (968)
...++...+++++-+ +++++.-|+..+......+...+.++..|+
T Consensus 457 vsdeVW~RvvQiVvN--nedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 457 VSDEVWYRVVQIVVN--NEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred ccHHHHHHhheeEec--chhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 223344444444433 345555555544444444555555555543
No 145
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.0078 Score=68.47 Aligned_cols=219 Identities=16% Similarity=0.184 Sum_probs=141.4
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH---HhccC
Q 002091 549 LVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN---ALCRS 625 (968)
Q Consensus 549 Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~---~L~~~ 625 (968)
|..+..+.+ ..++..|+..|..|.....- ........+..+++.+.+++..|+..+. |.+-.
T Consensus 203 l~~~~~~~D---~~Vrt~A~eglL~L~eg~kL------------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 203 LIYLEHDQD---FRVRTHAVEGLLALSEGFKL------------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred HHHHhcCCC---cchHHHHHHHHHhhcccccc------------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 566665554 67888888888777752211 1234556677888888899998765554 44411
Q ss_pred CChhh-HHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHH
Q 002091 626 PSAGN-IKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAM 704 (968)
Q Consensus 626 ~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al 704 (968)
+...+ -...+.+ .+...+...+.+.+-.+|..|+++|..+- ..+++.+...+++..+..|-+-=. -...+-
T Consensus 268 ~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~------ahkrpk 339 (823)
T KOG2259|consen 268 PLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRT------AHKRPK 339 (823)
T ss_pred cccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhh------cccchH
Confidence 11111 0111222 25667777778888889999999998886 555665555555544442221110 001111
Q ss_pred HHHhcC------------CC--CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHH
Q 002091 705 GILSKL------------PE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA 770 (968)
Q Consensus 705 ~~L~nL------------~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~ 770 (968)
....+. +. .++....++.+|+-..++.-|.+ .=.++|++|+..++.|+.. .|.....
T Consensus 340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlED------Ef~EVR~AAV~Sl~~La~s-sP~FA~~-- 410 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED------EFYEVRRAAVASLCSLATS-SPGFAVR-- 410 (823)
T ss_pred HHHhcCCcccCccccccCchhhccccccccccccccceeeeechH------HHHHHHHHHHHHHHHHHcC-CCCcHHH--
Confidence 122222 11 33445568889999999988888 6678999999999999986 5554433
Q ss_pred HcCChHHHHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 771 EAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 771 ~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
.+..|+.++++....+|..|..+|..++.
T Consensus 411 ---aldfLvDMfNDE~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 411 ---ALDFLVDMFNDEIEVVRLKAIFALTMISV 439 (823)
T ss_pred ---HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 36789999998888999999999999984
No 146
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.021 Score=68.24 Aligned_cols=237 Identities=17% Similarity=0.179 Sum_probs=163.7
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHH-hcCCC-CHHhHH
Q 002091 641 IPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGIL-SKLPE-VPQFTQ 718 (968)
Q Consensus 641 i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L-~nL~~-~~~~~~ 718 (968)
+|..++.|-+ ..-|..|+.+|..+- +-.+=.....+.-|+.|-++++|++.. .+.+ ..+-.+ +.+.. ++....
T Consensus 474 LPiVLQVLLS--QvHRlRAL~LL~RFL-DlGpWAV~LaLsVGIFPYVLKLLQS~a-~ELr-piLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 474 LPIVLQVLLS--QVHRLRALVLLARFL-DLGPWAVDLALSVGIFPYVLKLLQSSA-RELR-PILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred cchHHHHHHH--HHHHHHHHHHHHHHh-ccchhhhhhhhccchHHHHHHHhccch-Hhhh-hhHHHHHHHHHhcCchhHH
Confidence 4444444432 233556666777665 333333444467799999999999853 2343 334333 44545 877777
Q ss_pred HHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC-ChHHHHHHHHHH
Q 002091 719 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG-TTLTKEHAATSL 797 (968)
Q Consensus 719 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL 797 (968)
-++..++-..++..|..+.. -+.+-|..|+.+|..++.+ -+.-++...+.+.+......|+++ .+-++...+.+|
T Consensus 549 dLvKe~g~~YF~~vL~~~~~---~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icL 624 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQA---IPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICL 624 (1387)
T ss_pred HHHhccCceeEEEEecCcCC---CCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 78888888877777776321 3456789999999999997 777788888999999999999986 689999999999
Q ss_pred hhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-c
Q 002091 798 ARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-E 876 (968)
Q Consensus 798 ~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~ 876 (968)
+.|-.+-. +.+.+=.+.++.+.|..+|.++-++||.+|.-||.+++ .
T Consensus 625 G~LW~d~~--------------------------------~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 625 GRLWEDYD--------------------------------EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHhhhcc--------------------------------hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 99975332 11222256789999999999999999999999999999 3
Q ss_pred c-cccchhhHHH------------HhcCc---HHHHHHHhcCCChHHHHHHHHHHHHH
Q 002091 877 G-ERLQNGSKVL------------EDANA---IDRMVRFLSSPSPKLQEKALDSVERI 918 (968)
Q Consensus 877 ~-~~~~~~~~~i------------~~~~~---i~~L~~ll~~~~~~v~~~a~~~L~~l 918 (968)
+ .++++....+ .|... ...+..+++++++-++...+-.|..+
T Consensus 673 ~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 673 GSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred cccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2 1122211111 12211 23566677888898888877777766
No 147
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.78 E-value=0.05 Score=62.76 Aligned_cols=261 Identities=15% Similarity=0.153 Sum_probs=159.3
Q ss_pred HHHHHhccCchhhHHHhhcCchHHHHHhh----------hcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHH
Q 002091 484 TTLAEMELTDHHKASLLEGNVLGPLLHLV----------SRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDL 552 (968)
Q Consensus 484 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~l 552 (968)
.+|.-++.+..+-..+....++..|+++- ...++.+...|+++|.|+.- ++..|..+++.|..+.+++.
T Consensus 3 ~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 3 ETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 34555566666666666666666666655 23478999999999999994 67789999999999999999
Q ss_pred hcccCCC--CcchHHHHHHHHHHhhcCc-ccccCCCCccccccchhHHHHHHHhhc---------c--------CCHHHH
Q 002091 553 LLHHSSS--SSSLREETATAIMHLAVST-MYQESSQTPVTLLESDKEIFMLFSLIN---------L--------TGPNVQ 612 (968)
Q Consensus 553 L~~~~~~--~~~~~~~a~~~L~~La~~~-~~~~~~~~~~~il~~~~~i~~l~~ll~---------~--------~~~~~~ 612 (968)
|...... +.++......+|.-+.... ..+. .++...+++..+...+. . .+....
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~------~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRK------KLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHH------HHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 9876321 3677788888887777533 2222 23444445554444332 0 123345
Q ss_pred HHHHHHHHHhccCCChh---hHHHHHhhcCchHHHHHhh---cc--CChhHHHHHHHHHHHhccCCChhH----------
Q 002091 613 QRILQTFNALCRSPSAG---NIKTTLTQCSAIPVLVQLC---EH--DNENVRANAVKLFCCLVDDGDEAI---------- 674 (968)
Q Consensus 613 ~~al~~L~~L~~~~~~~---~~~~~i~~~g~i~~Lv~ll---~~--~~~~v~~~a~~~L~~Ls~~~~~~~---------- 674 (968)
..+++++.|+....... +....+. ..+..|..++ .. +.......++.+|.++-- .....
T Consensus 157 ~EiLKllFNit~~~~~~~~~~~~~~~~--~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl-~~~~~l~~~~~~~~~ 233 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVPEEFSPSIP--HLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL-ECLDSLLSPKFQQSS 233 (446)
T ss_pred HHHHHHHHHhhhccCcccchhhhHHHH--HHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh-HHHhhhhcccCCccc
Confidence 56889999987542221 1111221 1344444441 11 135677788888888731 11110
Q ss_pred -HHHhhccccHHHHHHHhccC----C---CHHHHHHHHHHHhcCCC-CHHhHHHHHHc----------------CCHHHH
Q 002091 675 -IREHVGQKCLETLVTIIQSS----H---NEEEIASAMGILSKLPE-VPQFTQWLLDA----------------GALPIV 729 (968)
Q Consensus 675 -~~~~~~~~~i~~Lv~lL~~~----~---~~~~~~~Al~~L~nL~~-~~~~~~~l~~~----------------g~l~~L 729 (968)
.........+..|+.+|... . -.+...+.+.+|.+++. +...++.+... ..-..|
T Consensus 234 ~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rL 313 (446)
T PF10165_consen 234 LFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRL 313 (446)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHH
Confidence 00112234677788777543 1 13566778888888888 66666666542 233667
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHHhhccC
Q 002091 730 LNFLKNGRQNDPNRFQVVENAVGALRRFTA 759 (968)
Q Consensus 730 v~lL~~~~~~~~~~~~v~e~a~~aL~~L~~ 759 (968)
++++.+ +...++..+...|+.||.
T Consensus 314 lrLmt~------~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 314 LRLMTS------PDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHhCC------CCchHHHHHHHHHHHHHh
Confidence 777777 446788888888888875
No 148
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.001 Score=73.60 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=57.0
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC-----CCccCHhHHHHHHHHHhhc
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS-----ILRPNKTLRQSIEEWKDRN 332 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~-----~l~pn~~l~~~I~~w~~~~ 332 (968)
.+.+|-|-+|..++.+||+++|||+||+.||.+.++ ...-||.|+..+... ...+|+..+.+|..|+..-
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 468999999999999999999999999999999876 467899999888542 2335666778888887543
No 149
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.74 E-value=0.0011 Score=69.48 Aligned_cols=64 Identities=20% Similarity=0.442 Sum_probs=53.4
Q ss_pred CcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC----CCccCHhHHHHHHHH
Q 002091 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS----ILRPNKTLRQSIEEW 328 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~----~l~pn~~l~~~I~~w 328 (968)
....|++|.-.|.|+-++ .|=|||||+||-++|.. ..+||.|+-.+..+ .+.++.++++.+.+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 468899999999999875 69999999999999977 77999998777443 467777888777655
No 150
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.73 E-value=0.003 Score=45.90 Aligned_cols=39 Identities=33% Similarity=0.413 Sum_probs=35.7
Q ss_pred chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhc
Q 002091 493 DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLS 531 (968)
Q Consensus 493 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 531 (968)
++++..+.+.|+++.|+++++++++++++.++++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999996
No 151
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.70 E-value=0.062 Score=55.61 Aligned_cols=238 Identities=16% Similarity=0.203 Sum_probs=144.7
Q ss_pred ChhHHHHHHHHHHHhccCCChhHHHHh-hccccHHHHHHHhccC----C-------CHHHHHHHHHHHhcCCCCHHhHHH
Q 002091 652 NENVRANAVKLFCCLVDDGDEAIIREH-VGQKCLETLVTIIQSS----H-------NEEEIASAMGILSKLPEVPQFTQW 719 (968)
Q Consensus 652 ~~~v~~~a~~~L~~Ls~~~~~~~~~~~-~~~~~i~~Lv~lL~~~----~-------~~~~~~~Al~~L~nL~~~~~~~~~ 719 (968)
+++.|+.|..-|+.-.+ ..++....+ ...|.+..|++=+-+- + .......|+..|-.++.+++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~-~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRE-SFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCC-C-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred CcchHHHHHHHHHHhhh-cccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 45566666665555432 222222222 2346666665433211 1 124456788888888889999999
Q ss_pred HHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhh
Q 002091 720 LLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLAR 799 (968)
Q Consensus 720 l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~n 799 (968)
+++++..-.|..+|+..+.+. +-+.+|-.+.++++.+....+++....+.+..++|...+.+..|+...|..|...+..
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r-~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTR-PFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHTTGGGGGHHHHH----SH-HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhcccccc-ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999888888887754332 4578999999999999998788899999999999999999999999999999999988
Q ss_pred hcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccc
Q 002091 800 FSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGER 879 (968)
Q Consensus 800 l~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~ 879 (968)
+-.+.. ++...++ +++=..+....|.++.
T Consensus 166 IL~dd~------------------------------------------GL~yiC~-----t~eRf~av~~vL~~mV---- 194 (262)
T PF04078_consen 166 ILLDDV------------------------------------------GLNYICQ-----TAERFFAVAMVLNKMV---- 194 (262)
T ss_dssp HHHSHH------------------------------------------HHHHHTS-----SHHHHHHHHHHHHHHH----
T ss_pred HHcchh------------------------------------------HHHHHhc-----CHHHHHHHHHHHHHHH----
Confidence 863221 2222221 1221222223333332
Q ss_pred cchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhh----hcccCCchhhHHHHHHH
Q 002091 880 LQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVD----LTQRGNSSMKSLSARVL 955 (968)
Q Consensus 880 ~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~----ll~~~~~~~~~~A~~aL 955 (968)
..+...+++++.+..+.+..++..++..+..+.+.-+..|-+ -+-.+|+.+++.-...+
T Consensus 195 -----------------~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl 257 (262)
T PF04078_consen 195 -----------------EQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQLRDGTFSNILKDDPSTKRWLQQLL 257 (262)
T ss_dssp -----------------HHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHH
T ss_pred -----------------HHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHH
Confidence 223456778888888888888888777666555432222222 22234677777666666
Q ss_pred HHHh
Q 002091 956 AHLN 959 (968)
Q Consensus 956 ~~L~ 959 (968)
.+++
T Consensus 258 ~nl~ 261 (262)
T PF04078_consen 258 SNLN 261 (262)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 5553
No 152
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0079 Score=66.76 Aligned_cols=186 Identities=15% Similarity=0.156 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCC
Q 002091 696 NEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGV 774 (968)
Q Consensus 696 ~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~ 774 (968)
+.....+++-+|..++. -.-.+.-+.+..+.+.|+++|.. ++.-+.--+...++|+.-. -...+..+.+.|+
T Consensus 402 d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~------Peimi~~~~t~~icn~vv~-fsnL~~~fL~~~i 474 (743)
T COG5369 402 DDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN------PEIMIEFPDTIDICNKVVP-FSNLGAGFLEKSI 474 (743)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC------ccceeeccchhhhhheeee-ccchHHHHHHhhH
Confidence 33444566677777777 45566677788899999999998 5555666778889999887 6778889999999
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHh
Q 002091 775 IPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVR 854 (968)
Q Consensus 775 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~ 854 (968)
+..|+.++.+.|..+|....|.|..+..+ |.....|.++...+++.+++
T Consensus 475 Idvl~~~v~sKDdaLqans~wvlrHlmyn-------------------------------cq~~ekf~~Lakig~~kvl~ 523 (743)
T COG5369 475 IDVLVNLVMSKDDALQANSEWVLRHLMYN-------------------------------CQKNEKFKFLAKIGVEKVLS 523 (743)
T ss_pred HHHHHHHhhcchhhhhhcchhhhhhhhhc-------------------------------CcchhhhhhHHhcCHHHHHH
Confidence 99999999999999999999999988742 24455677788889999999
Q ss_pred hccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHH----HHHHHhcCCChHHHHHHHHHHHHHh
Q 002091 855 VLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAID----RMVRFLSSPSPKLQEKALDSVERIF 919 (968)
Q Consensus 855 lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~----~L~~ll~~~~~~v~~~a~~~L~~l~ 919 (968)
+..+++..|++..+..|.|+. +..+.++....+.+..-.+ .+.+-+...||-..+..+.+|-++.
T Consensus 524 ~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~a 593 (743)
T COG5369 524 YTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNA 593 (743)
T ss_pred HhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence 999999999999999999999 5544333333333333333 3444445666654444455555554
No 153
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.69 E-value=0.004 Score=48.78 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhh
Q 002091 745 QVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARF 800 (968)
Q Consensus 745 ~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 800 (968)
.+|..|+++|++++.. .++..+. ....++|.|+.+|.++++.||..|+++|+++
T Consensus 2 ~vR~~A~~aLg~l~~~-~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEG-CPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTT-THHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcc-cHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5799999999998876 4444433 4567899999999999999999999999985
No 154
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.001 Score=73.67 Aligned_cols=55 Identities=25% Similarity=0.473 Sum_probs=47.0
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhc----CCCCCCCCCCcCCCCCCccC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD----GNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~----~~~~CP~t~~~l~~~~l~pn 318 (968)
.+..||||++-..=|+.+.|||-||=.||-.+|.- +...||+|+..+....+.|-
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 38899999999999999999999999999997753 45679999998877666554
No 155
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.39 Score=56.44 Aligned_cols=346 Identities=16% Similarity=0.150 Sum_probs=190.3
Q ss_pred cCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcC---CHHHHHHHHHHHHHhccCchhhHHHhhcCchHH
Q 002091 431 SSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG---PESVKMRMATTLAEMELTDHHKASLLEGNVLGP 507 (968)
Q Consensus 431 ~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~---~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~ 507 (968)
.+.+.-+|.+|...|..+-.++.- ++..++..+..+ ++-.+..-.++-..+...+ ..+..-..+.
T Consensus 182 ~s~~~m~QyHalglLyqirk~drl--------a~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~----~~~~s~~~~f 249 (865)
T KOG1078|consen 182 NSDNIMVQYHALGLLYQIRKNDRL--------AVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN----QQADSPLFPF 249 (865)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHccccccchhHHHHHHHHHHHHhhhc----ccchhhHHHH
Confidence 455667889999988876332221 223344443333 2222222222222221111 1112223455
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCc
Q 002091 508 LLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTP 587 (968)
Q Consensus 508 Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~ 587 (968)
|=.+|++....+...|++++.+|... +-..+.. ++..|--++.++. ..++..|+.+|..++......-.
T Consensus 250 l~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~---~~lRfaAvRtLnkvAm~~P~~v~---- 318 (865)
T KOG1078|consen 250 LESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPK---VALRFAAVRTLNKVAMKHPQAVT---- 318 (865)
T ss_pred HHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcH---HHHHHHHHHHHHHHHHhCCcccc----
Confidence 55677777888888999998888632 2222222 5666666666655 67899999999999873321110
Q ss_pred cccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 588 VTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 588 ~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
. +-..+-.+++..+..+-..++.+|..-.. ...+...|. -++..+.=+..+..-+...|+.+|+..-
T Consensus 319 --~-----cN~elE~lItd~NrsIat~AITtLLKTG~---e~sv~rLm~---qI~~fv~disDeFKivvvdai~sLc~~f 385 (865)
T KOG1078|consen 319 --V-----CNLDLESLITDSNRSIATLAITTLLKTGT---ESSVDRLMK---QISSFVSDISDEFKIVVVDAIRSLCLKF 385 (865)
T ss_pred --c-----cchhHHhhhcccccchhHHHHHHHHHhcc---hhHHHHHHH---HHHHHHHhccccceEEeHHHHHHHHhhc
Confidence 0 11223344444455555555555544321 111111111 1333333333333445555555555543
Q ss_pred cCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHH
Q 002091 668 DDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQV 746 (968)
Q Consensus 668 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v 746 (968)
+.. ..+.+..|-.+|...+.-+.+.+..-++..+.. +++.++ -++..|...+.+. ..
T Consensus 386 ----p~k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--------e~ 443 (865)
T KOG1078|consen 386 ----PRK-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--------EF 443 (865)
T ss_pred ----cHH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--------cc
Confidence 211 234566777777776665666666666666555 555443 2466777777663 23
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCc
Q 002091 747 VENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEI 826 (968)
Q Consensus 747 ~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~ 826 (968)
..-+...|..+...+ |. .......+..+.....=.+..++..|..+|.+|......+..+
T Consensus 444 ~~i~~rILhlLG~Eg-P~---a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~s---------------- 503 (865)
T KOG1078|consen 444 TQIAVRILHLLGKEG-PK---APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPS---------------- 503 (865)
T ss_pred hHHHHHHHHHHhccC-CC---CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcccc----------------
Confidence 456666666665531 11 1112233444555555567889999999999998544432222
Q ss_pred ccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 827 GCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 827 ~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
+...|.+++-+.|.++|++|-.+|.++.
T Consensus 504 ---------------------I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 504 ---------------------ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred ---------------------HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 4566778999999999999999999987
No 156
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.65 E-value=0.011 Score=61.96 Aligned_cols=181 Identities=16% Similarity=0.181 Sum_probs=111.3
Q ss_pred hcCCHHHHHHHHHHHHHhccCc---hhhHHHhh--cCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCCh
Q 002091 472 SAGPESVKMRMATTLAEMELTD---HHKASLLE--GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAV 546 (968)
Q Consensus 472 ~~~~~~~~~~aa~~L~~L~~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v 546 (968)
.+.+.+.|..+..-|..+.... +....+.+ ...+..+...+.+....+...|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4557888888988888884332 22222322 245567777777777789999999999998533222221223478
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhH-HHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 002091 547 GPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKE-IFMLFSLINLTGPNVQQRILQTFNALCRS 625 (968)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~-i~~l~~ll~~~~~~~~~~al~~L~~L~~~ 625 (968)
|.|++.+.+.. ..+++.|..+|..+...... .... ...+....++.++.++..++..+..+...
T Consensus 97 ~~Ll~~~~~~~---~~i~~~a~~~L~~i~~~~~~------------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 97 PPLLKKLGDSK---KFIREAANNALDAIIESCSY------------SPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHGGG------HHHHHHHHHHHHHHHTTS-H--------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccc---HHHHHHHHHHHHHHHHHCCc------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 88888888765 67889999999999874320 1233 56667778899999999999988888654
Q ss_pred CC--hhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 626 PS--AGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 626 ~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
.. ...+.....-...++.+...+.+.++++|..|-.+++.+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 22 1222111101236788889999999999999999999986
No 157
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.62 E-value=0.052 Score=56.78 Aligned_cols=237 Identities=17% Similarity=0.148 Sum_probs=153.1
Q ss_pred HhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHc-CChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcc
Q 002091 510 HLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE-GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPV 588 (968)
Q Consensus 510 ~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~ 588 (968)
+++++=++-.+..|..+|.++...++.|..+-.. ..-..++++++..-.. ..++.+.+-+++.+..++.....
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~-~qlQY~SL~~iw~lTf~~~~aqd----- 229 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGV-KQLQYNSLIIIWILTFSKECAQD----- 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhcCHHHHHH-----
Confidence 3444446667889999999999988888766443 4566788888765432 67899999999999876643321
Q ss_pred ccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC--ChhHHHHHHHHHHH
Q 002091 589 TLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCC 665 (968)
Q Consensus 589 ~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~ 665 (968)
+-.-.+.+..++.+++ .....+-..+++.+.+++....-..+.......++.+..--+.+.+ +++++...-.+=..
T Consensus 230 -i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 230 -IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 1122344555666665 3345667778899999986322233444445444444443344332 45554433322111
Q ss_pred hcc---------------------CCC--------hhHHHHhhcc--ccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-C
Q 002091 666 LVD---------------------DGD--------EAIIREHVGQ--KCLETLVTIIQSSHNEEEIASAMGILSKLPE-V 713 (968)
Q Consensus 666 Ls~---------------------~~~--------~~~~~~~~~~--~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~ 713 (968)
|.. ..+ ..++..+.+. ..+..|.+++++..+.....-|+.-+..+.. .
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~ 388 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS 388 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence 110 000 1122233222 4678888999887554456678888888888 9
Q ss_pred HHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccC
Q 002091 714 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 759 (968)
Q Consensus 714 ~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~ 759 (968)
|+.+..+...|+=..+.+++.+ +++.++-+|+.++..+..
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh------~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINH------DDDDVKFEALQALQTCIS 428 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcC------CCchhhHHHHHHHHHHHh
Confidence 9999999999999999999999 778899999998876653
No 158
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.5 Score=56.71 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=105.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhc
Q 002091 423 ILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEG 502 (968)
Q Consensus 423 i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~ 502 (968)
.|.+++...+.|.+++.-.-..|.+.+...++...+ ++..+.+=|.+.++.+|..|..++..+-... .-.
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~~e------l~~ 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE------LLG 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcChHH------HHH
Confidence 344555555788888877777777777655544433 3456677788999999999999887763211 123
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcC
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 577 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 577 (968)
..++++.+++.++++.+|+.|+-|+.++-. -.+....+.|.+..+..++.+.+ +.+..+|+.+|..+...
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~d---P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSD---PIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCC---chHHHHHHHHHHHhchh
Confidence 478899999999999999999999999953 34455667788899988888766 88999999999988753
No 159
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.58 E-value=0.14 Score=62.76 Aligned_cols=296 Identities=15% Similarity=0.132 Sum_probs=160.1
Q ss_pred hHHHHHhhhc-CCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccC
Q 002091 505 LGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQES 583 (968)
Q Consensus 505 i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 583 (968)
++.+...++. .....|.+|+..|..|+.+-..-.++ .-++|.++.++.+.. ..++..|+.+|..+...-....
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~---a~Vra~Al~Tlt~~L~~Vr~~~- 497 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSE---ADVRATALETLTELLALVRDIP- 497 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCch---HHHHHHHHHHHHHHHhhccCCC-
Confidence 3444444443 35678888888888888532222121 236788888888765 7788888877777654221100
Q ss_pred CCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc-CChhHHHHHHHH
Q 002091 584 SQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH-DNENVRANAVKL 662 (968)
Q Consensus 584 ~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~~ 662 (968)
..-..++.+ -..|.|-.++.+ ....++..-+..
T Consensus 498 ---------------------------------------------~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsn 531 (1431)
T KOG1240|consen 498 ---------------------------------------------PSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASN 531 (1431)
T ss_pred ---------------------------------------------cccchhhHh-hhhhhhHhhhccCccceehhhHHhh
Confidence 000012222 245666666665 345566666666
Q ss_pred HHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCc
Q 002091 663 FCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPN 742 (968)
Q Consensus 663 L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~ 742 (968)
|..|+. ..-.+++.+.......+++...+. .....-.+. ....+. .++-...+.+|.+ +
T Consensus 532 la~LA~-----tA~rFle~~q~~~~~g~~n~~nse--------t~~~~~~~~-~~~~L~-~~V~~~v~sLlsd------~ 590 (1431)
T KOG1240|consen 532 LAQLAK-----TAYRFLELTQELRQAGMLNDPNSE--------TAPEQNYNT-ELQALH-HTVEQMVSSLLSD------S 590 (1431)
T ss_pred HHHHHH-----HHHHHHHHHHHHHhcccccCcccc--------cccccccch-HHHHHH-HHHHHHHHHHHcC------C
Confidence 666651 111111111111111122222111 000000011 111111 2223445556655 3
Q ss_pred hhHHHHHHHHHHhhccCCCCHHHHHHHHHc----CChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 002091 743 RFQVVENAVGALRRFTAPTNLEWQKRAAEA----GVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFW 818 (968)
Q Consensus 743 ~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~----g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~ 818 (968)
+.-|+...+..|.-||. .+.+. =+++.|+.+|++.|+.+|..--..+.-++..-
T Consensus 591 ~~~Vkr~Lle~i~~LC~--------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V-------------- 648 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCV--------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV-------------- 648 (1431)
T ss_pred chHHHHHHHHHHHHHHH--------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE--------------
Confidence 44566666666666664 22222 36789999999999888865444443332100
Q ss_pred ccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHH
Q 002091 819 CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMV 897 (968)
Q Consensus 819 ~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~ 897 (968)
|.-+ ++...++.|.+-|.++++-|...|+.+|..|. .+--.+... -+.++-+.
T Consensus 649 --------------G~rs-------~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-----~~i~~~v~ 702 (1431)
T KOG1240|consen 649 --------------GWRS-------VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-----KDILQDVL 702 (1431)
T ss_pred --------------eeee-------HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-----HHHHHhhh
Confidence 0000 34567788888899999999999999999998 331111111 12345566
Q ss_pred HHhcCCChHHHHHHHHHHHHHhcC
Q 002091 898 RFLSSPSPKLQEKALDSVERIFRL 921 (968)
Q Consensus 898 ~ll~~~~~~v~~~a~~~L~~l~~~ 921 (968)
-++-++|.=+++.++.+|..+.+.
T Consensus 703 PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 703 PLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hheeCchHHHHHHHHHHHHHHHhh
Confidence 677899999999999999887644
No 160
>PRK14707 hypothetical protein; Provisional
Probab=96.53 E-value=4.9 Score=52.85 Aligned_cols=514 Identities=13% Similarity=0.104 Sum_probs=219.1
Q ss_pred chhHHHHHHhhcc--ChHHHHHHHHHHHH-hccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhc-cCCchh
Q 002091 379 DDAVESIVRSLGR--RIEERKLAVALLLE-LSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENL-SFSDDN 454 (968)
Q Consensus 379 ~~~v~~lv~~L~~--~~~~~~~A~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~L-s~~~~n 454 (968)
..++..++.-++. +....++|+..|.. ++.....+..+-. .|....|-.+-+..+..+-.+|+..|..= ..+..-
T Consensus 204 ~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~-q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l 282 (2710)
T PRK14707 204 AQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKP-QELGNALNALSKWADTPVCAAAASALAERLVDDPGL 282 (2710)
T ss_pred hHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCCh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHH
Confidence 3445555555543 22334455555554 4444444433333 44444444444555655555555555433 222222
Q ss_pred HHHHHhCCchHHHHHHHhc-CCHH-HHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhc--CCHHHHHHHHHHHHHh
Q 002091 455 VVQMAKANYFKHLLQRLSA-GPES-VKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR--GDIQMKKVAVKALRNL 530 (968)
Q Consensus 455 ~~~i~~~g~v~~Lv~~L~~-~~~~-~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L 530 (968)
+..+ +.-.+...+.-|+. .+.. .+..+..+-..|..+.+.+..+ +.-.+...++-|+. ++...+..|...-..|
T Consensus 283 ~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 283 RKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred HHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 3333 22223333344433 2333 3333444444455544444322 22334444444443 3455555555555566
Q ss_pred cCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHH-HhhcCcccccCCCCccccccchhHHHHHHHhhccCCH
Q 002091 531 SSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIM-HLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGP 609 (968)
Q Consensus 531 s~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~-~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~ 609 (968)
+.+++-++.+--. ++...+.-|..-++ ......|+..|+ .+..+.+.++. +...+.-..|-.+-+=.+.
T Consensus 361 ~~d~~l~~~l~~q-~~a~~lNalsKWp~--~~~c~~aa~~LA~~l~~d~~l~~~-------~~~Q~van~lnalsKWPd~ 430 (2710)
T PRK14707 361 VADPELRKDLEPQ-GVSSVLNALSKWPD--TPVCAAAASALAEHVVDDLELRKG-------LDPQGVSNALNALAKWPDL 430 (2710)
T ss_pred ccCHhhhcccchh-HHHHHHhhhhcCCC--chHHHHHHHHHHHHhccChhhhhh-------cchhhHHHHHHHhhcCCcc
Confidence 6666666555433 44445555554332 233444444443 34444333332 2222222233333332233
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHH-HhccCCChhHHHHhhccccHHHHH
Q 002091 610 NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC-CLVDDGDEAIIREHVGQKCLETLV 688 (968)
Q Consensus 610 ~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~-~Ls~~~~~~~~~~~~~~~~i~~Lv 688 (968)
.+...+...|..-.. ...+.++.+.-.++...|-.+.+=++..+-..|+..|. .|+ ...+..+.+ +..-+..-+
T Consensus 431 ~~C~~aa~~lA~~la--~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~--~~~~l~~a~-~~q~~~~~L 505 (2710)
T PRK14707 431 PICGQAVSALAGRLA--HDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA--HERRLRKAL-KPQEVVIAL 505 (2710)
T ss_pred hhHHHHHHHHHHHHh--ccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc--ccHHHHhhc-CHHHHHHHH
Confidence 333333333332211 12333334433333333333444444444444444333 332 222222222 222222222
Q ss_pred HHhccCCC-HHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHH
Q 002091 689 TIIQSSHN-EEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQK 767 (968)
Q Consensus 689 ~lL~~~~~-~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~ 767 (968)
+-|+...+ .....++.++-+.+.......+.+.. .-+..+++-+... ++....+.++..|..+... ++..+.
T Consensus 506 ~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~-~~~~~~lnalSKw-----p~s~~C~~A~~~iA~~l~~-~~~~~~ 578 (2710)
T PRK14707 506 HSLSKWPDTPICAEAASALAERVVDELQLRKAFDA-HQVVNTLKALSKW-----PDKQLCAVAASGLAERLAD-EPQLPK 578 (2710)
T ss_pred HHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhh-HHHHHHHHhhhcC-----CchhHHHHHHHHHHHHhhc-chhhHH
Confidence 22332222 22223333333444433333222211 1223333333221 3445566666666665543 555665
Q ss_pred HHHHcCChHHHHHHhhc-CCh-HHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhh
Q 002091 768 RAAEAGVIPKLVQLLEY-GTT-LTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLE 845 (968)
Q Consensus 768 ~~~~~g~i~~Lv~lL~~-~~~-~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~ 845 (968)
.+- ...++.+++-|+. .+. ..+..+.+.-..+.. .+.+.. . ..
T Consensus 579 ~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~--------------------------------~-l~ 623 (2710)
T PRK14707 579 DLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRK--------------------------------E-LD 623 (2710)
T ss_pred hhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhh--------------------------------h-cc
Confidence 554 3345555555552 333 444444444444432 221100 0 11
Q ss_pred cCChHHHHhhcc-CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHh-cCCChHHHHHHHHHH-HHHhcC
Q 002091 846 ANAVRPLVRVLE-DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFL-SSPSPKLQEKALDSV-ERIFRL 921 (968)
Q Consensus 846 ~g~i~~Lv~lL~-~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll-~~~~~~v~~~a~~~L-~~l~~~ 921 (968)
...+..+++-|. .++...++.+...|..-. ... .....+ ....+.-+++-+ +.++..+-..|...| .+|..+
T Consensus 624 ~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~---~l~~~f-naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~ 699 (2710)
T PRK14707 624 PVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDR---LLRKTF-NSLDVANALNALSKWPDTPVCAAAAGGMAERLAAD 699 (2710)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhch---hhHhhc-chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcC
Confidence 223444555443 345556666666555433 211 112222 233444444444 556665555555555 455666
Q ss_pred hhhHHHhcccCCchhhhhccc-CCchhhHHHHHHHH
Q 002091 922 PEFKQKYGKSAQMPLVDLTQR-GNSSMKSLSARVLA 956 (968)
Q Consensus 922 ~~~~~~~~~~~~~~Lv~ll~~-~~~~~~~~A~~aL~ 956 (968)
...+..+....+...++.+.. .+....+.|+..|+
T Consensus 700 ~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA 735 (2710)
T PRK14707 700 PGLRKELNPVDVANALNALSKWPRTPVCAAVASALA 735 (2710)
T ss_pred hhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHH
Confidence 667666655555556666665 44555555555554
No 161
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.44 Score=55.22 Aligned_cols=338 Identities=14% Similarity=0.137 Sum_probs=191.1
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCC
Q 002091 507 PLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQT 586 (968)
Q Consensus 507 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~ 586 (968)
.+-+=|.+.++....-|+.++.|+-. .+++..+. +-+-++|.+++.. +-++..|+-+|..|-....
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~-re~~ea~~-----~DI~KlLvS~~~~-~~vkqkaALclL~L~r~sp------- 180 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGS-REMAEAFA-----DDIPKLLVSGSSM-DYVKQKAALCLLRLFRKSP------- 180 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhcc-HhHHHHhh-----hhhHHHHhCCcch-HHHHHHHHHHHHHHHhcCc-------
Confidence 33334556677888888889888843 22333222 2233667665532 5677777777777765432
Q ss_pred ccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc-------------CCh
Q 002091 587 PVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH-------------DNE 653 (968)
Q Consensus 587 ~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-------------~~~ 653 (968)
.++.-++....++.++++.+-.+...+...+..|+... .++.+..+- -++..|.+++.. +.+
T Consensus 181 --Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~-p~~yk~~~~--~avs~L~riv~~~~t~~qdYTyy~vP~P 255 (938)
T KOG1077|consen 181 --DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN-PESYKTCLP--LAVSRLSRIVVVVGTSLQDYTYYFVPAP 255 (938)
T ss_pred --cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC-CHHHhhhHH--HHHHHHHHHHhhcccchhhceeecCCCh
Confidence 24555677788888888887777777777777776542 111111111 123333333322 245
Q ss_pred hHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-CCH---------HHHHHHHHHHhcCCCCHHhHHHHHHc
Q 002091 654 NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNE---------EEIASAMGILSKLPEVPQFTQWLLDA 723 (968)
Q Consensus 654 ~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~---------~~~~~Al~~L~nL~~~~~~~~~l~~~ 723 (968)
=++.+++++|.++-...++..+.... .+.+.++.-.+.+ ... .+.-.|+.....+-.+++. + .
T Consensus 256 WL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~l---l--~ 328 (938)
T KOG1077|consen 256 WLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPEL---L--S 328 (938)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHH---H--H
Confidence 67888888888885222232222221 2233333333311 011 1112233333333222222 1 1
Q ss_pred CCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhh-cCChHHHHHHHHHHhhhcc
Q 002091 724 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE-YGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 724 g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~ 802 (968)
.++..|-.+|.+ ....+|.-+...++.|+.+ ....+.+..+ ...++..|+ ..|..+++.|+..|.-++
T Consensus 329 ~~~~~Lg~fls~------rE~NiRYLaLEsm~~L~ss--~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mc- 397 (938)
T KOG1077|consen 329 RAVNQLGQFLSH------RETNIRYLALESMCKLASS--EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMC- 397 (938)
T ss_pred HHHHHHHHHhhc------ccccchhhhHHHHHHHHhc--cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHh-
Confidence 245667777777 4456788888888888873 5555666666 788888888 558899999999998887
Q ss_pred cCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh----ccc
Q 002091 803 NSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI----EGE 878 (968)
Q Consensus 803 ~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~----~~~ 878 (968)
+.++... ++..|++-|.+.|..+++....=..-|+ .+-
T Consensus 398 ---------------------------------D~~Nak~-----IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy 439 (938)
T KOG1077|consen 398 ---------------------------------DVSNAKQ-----IVAELLQYLETADYSIREEIVLKVAILAEKYATDY 439 (938)
T ss_pred ---------------------------------chhhHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc
Confidence 3333332 5677888888888887775544333343 010
Q ss_pred cc-c-------hhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 002091 879 RL-Q-------NGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 879 ~~-~-------~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 920 (968)
.| . ...-.+.+.+.+.+++++.. .+++++..|+.-+...+.
T Consensus 440 ~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq 488 (938)
T KOG1077|consen 440 SWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQ 488 (938)
T ss_pred chhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHh
Confidence 11 0 11223344555666666553 357788888776665543
No 162
>PRK14707 hypothetical protein; Provisional
Probab=96.49 E-value=5.1 Score=52.65 Aligned_cols=515 Identities=13% Similarity=0.114 Sum_probs=237.5
Q ss_pred HHHHHHhhcc---ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhh-cCCCHHHHHHHHHHHHhccCCchhHHH
Q 002091 382 VESIVRSLGR---RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMA-SSDDNQASRDAQELLENLSFSDDNVVQ 457 (968)
Q Consensus 382 v~~lv~~L~~---~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~s~~~~~~~~a~~~L~~Ls~~~~n~~~ 457 (968)
+..++.-+|. +.+.+..+......++..+..+..+.. -.|..+++-+ +.++...-.+|+..|...-.++.....
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~--q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDA--QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccch--HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 3344444443 223344444444555555555655533 3455555544 444444444555555544434444333
Q ss_pred HHhCCchHHHHHHHhcC-CHHHHHHHHHHHHH-hccCchhhHHHhhcCchHHHHHhhh-cCCHHH-HHHHHHHHHHhcCC
Q 002091 458 MAKANYFKHLLQRLSAG-PESVKMRMATTLAE-MELTDHHKASLLEGNVLGPLLHLVS-RGDIQM-KKVAVKALRNLSSV 533 (968)
Q Consensus 458 i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~-L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~-~~~a~~aL~~Ls~~ 533 (968)
-++...+...+..|+.= +...-.+++..|.. ++.+...+..+- .-.+...++-|+ =.+..+ +..|...-..|..+
T Consensus 243 ~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d 321 (2710)
T PRK14707 243 ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWADLPVCAEAAIALAERLADD 321 (2710)
T ss_pred hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhcc
Confidence 33444455555555543 33344455555433 343333333222 222223333332 234333 33444444445555
Q ss_pred CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHH
Q 002091 534 PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQ 613 (968)
Q Consensus 534 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~ 613 (968)
++-++.+- .-.+...+.-|..-.+. ......|...-..|+.++..+.. +...|.-..|-.+-+=.+.....
T Consensus 322 ~~l~~~~~-~~~~~~~LNalsKWpd~-~~C~~Aa~~LA~rl~~d~~l~~~-------l~~q~~a~~lNalsKWp~~~~c~ 392 (2710)
T PRK14707 322 PELCKALN-ARGLSTALNALSKWPDN-PVCAAAVSALAERLVADPELRKD-------LEPQGVSSVLNALSKWPDTPVCA 392 (2710)
T ss_pred Hhhhhccc-hHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHhccCHhhhcc-------cchhHHHHHHhhhhcCCCchHHH
Confidence 54443332 22344455555543321 33333344444445544443332 22222223333333323333444
Q ss_pred HHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhcc
Q 002091 614 RILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS 693 (968)
Q Consensus 614 ~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 693 (968)
.+...|..-.. ...+.+..+...|+...|-.+.+=++..+-..++..|..-. .++.+....+ +.-.+...++.|..
T Consensus 393 ~aa~~LA~~l~--~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~l-a~d~~l~~~~-~p~~va~~LnalSK 468 (2710)
T PRK14707 393 AAASALAEHVV--DDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRL-AHDTELCKAL-DPINVTQALDALSK 468 (2710)
T ss_pred HHHHHHHHHhc--cChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHH-hccHHHHhhc-ChHHHHHHHHHhhc
Confidence 44444433211 23444555655565566666666677777777777666554 3333333332 33334444555544
Q ss_pred CCCHHHHHHHHH-HHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc
Q 002091 694 SHNEEEIASAMG-ILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA 772 (968)
Q Consensus 694 ~~~~~~~~~Al~-~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~ 772 (968)
-.+..+...|+. ....|+.+.+.++.+--.++...|-.+-+-+ ....-.+.+.++-..+.. .....+.+...
T Consensus 469 WPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~P-----d~~~c~~A~~~lA~rl~~--~~~l~~~~~~~ 541 (2710)
T PRK14707 469 WPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWP-----DTPICAEAASALAERVVD--ELQLRKAFDAH 541 (2710)
T ss_pred CCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCC-----CcHHHHHHHHHHHHHhcc--chhhhhhhhhH
Confidence 334344444444 4455665666655553333333333333331 223445555566666664 34445454444
Q ss_pred CChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHH
Q 002091 773 GVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPL 852 (968)
Q Consensus 773 g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~L 852 (968)
++...+-.+-+..+...++.++..|..+....+. ...-.....|..+
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~---------------------------------~~~~L~aq~Vs~l 588 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERLADEPQ---------------------------------LPKDLHRQGVVIV 588 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchh---------------------------------hHHhhhhhHHHHH
Confidence 4444444444444556666666666655321111 1111234456777
Q ss_pred Hhhcc-CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHh-cCCChHHHHHHHHHH-HHHhcChhhHHHh
Q 002091 853 VRVLE-DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFL-SSPSPKLQEKALDSV-ERIFRLPEFKQKY 928 (968)
Q Consensus 853 v~lL~-~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll-~~~~~~v~~~a~~~L-~~l~~~~~~~~~~ 928 (968)
++-|+ .++...+..++..|...+ ... .....+ +...+..+++-+ +.++...-+.+...| ..++........|
T Consensus 589 lNaLSKWP~~~aC~~Aa~~LA~~l~~~~---~lr~~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~f 664 (2710)
T PRK14707 589 LNALSKWPDTAVCAEAVNALAERLVDEP---DLRKEL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTF 664 (2710)
T ss_pred HHhhccCCCcHHHHHHHHHHHHHhccCh---hhhhhc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhc
Confidence 77776 455554444555555444 321 222222 233344444444 445544444444443 4455555555566
Q ss_pred cccCCchhhhhccc-CCchhhHHHHHHHH
Q 002091 929 GKSAQMPLVDLTQR-GNSSMKSLSARVLA 956 (968)
Q Consensus 929 ~~~~~~~Lv~ll~~-~~~~~~~~A~~aL~ 956 (968)
....+..+++.|.. .+.+....|+..|+
T Consensus 665 naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA 693 (2710)
T PRK14707 665 NSLDVANALNALSKWPDTPVCAAAAGGMA 693 (2710)
T ss_pred chHHHHHHHHhhhcCCCchHHHHHHHHHH
Confidence 65555567777766 55666666666665
No 163
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.45 E-value=0.0062 Score=44.18 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=35.2
Q ss_pred HHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 764 EWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 764 ~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
+.+..+.+.|+++.|+.++.++++.++..++++|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778889999999999999889999999999999986
No 164
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.18 Score=51.76 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=66.9
Q ss_pred cHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCC
Q 002091 683 CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTN 762 (968)
Q Consensus 683 ~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~ 762 (968)
.+..|++-+... +.-.+..++-+|+.|-+ .-.++.|.+.|.+.. .+.-+|-.|+.+|+.++.
T Consensus 188 aI~al~~~l~~~-SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~----E~pMVRhEaAeALGaIa~--- 249 (289)
T KOG0567|consen 188 AINALIDGLADD-SALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDET----EHPMVRHEAAEALGAIAD--- 249 (289)
T ss_pred HHHHHHHhcccc-hHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhh----cchHHHHHHHHHHHhhcC---
Confidence 455555555553 55677788888888764 235777778887743 457799999999998884
Q ss_pred HHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 763 LEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 763 ~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
++. ++.|.+.+.+.++-+++.+..+|.-+-
T Consensus 250 e~~---------~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 EDC---------VEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHH---------HHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 443 567888888888889998888886654
No 165
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.40 E-value=0.27 Score=51.01 Aligned_cols=228 Identities=18% Similarity=0.183 Sum_probs=136.9
Q ss_pred ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHh-------hcCCC-----HHHHHHHHHHHHhccCCchhHHHH
Q 002091 392 RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTM-------ASSDD-----NQASRDAQELLENLSFSDDNVVQM 458 (968)
Q Consensus 392 ~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~l-------L~s~~-----~~~~~~a~~~L~~Ls~~~~n~~~i 458 (968)
+++.++.|+.+|..--. .++....+=...|.+..|+.= ++.+. ..-..+|+..|.-++.|++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 34566777555554322 344444444546777766542 22221 233467888888889999999999
Q ss_pred HhCCchHHHHHHHhcCC-----HHHHHHHHHHHHHhccCc--hhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhc
Q 002091 459 AKANYFKHLLQRLSAGP-----ESVKMRMATTLAEMELTD--HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLS 531 (968)
Q Consensus 459 ~~~g~v~~Lv~~L~~~~-----~~~~~~aa~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 531 (968)
.++...-.|-..|+..+ +..|-.+.++++.|...+ +.-.-+.+.+.||..++.+..|+.-.|..|.-++.++-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99988777777776553 568888999999997644 33445557899999999999999999999999998885
Q ss_pred CCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHH
Q 002091 532 SVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNV 611 (968)
Q Consensus 532 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~ 611 (968)
.++. |+..+ -. + .+--.....+|.++.. .+.+..++.+
T Consensus 168 ~dd~---------GL~yi---C~--t---~eRf~av~~vL~~mV~-------------------------~l~~~pS~RL 205 (262)
T PF04078_consen 168 LDDV---------GLNYI---CQ--T---AERFFAVAMVLNKMVE-------------------------QLVKQPSPRL 205 (262)
T ss_dssp HSHH---------HHHHH---TS--S---HHHHHHHHHHHHHHHH-------------------------HHHHS--HHH
T ss_pred cchh---------HHHHH---hc--C---HHHHHHHHHHHHHHHH-------------------------HHccCCChhH
Confidence 4332 22211 11 1 2223334444544432 2334557888
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHH-----hhccCChhHHHHHHHHHHHh
Q 002091 612 QQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQ-----LCEHDNENVRANAVKLFCCL 666 (968)
Q Consensus 612 ~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~-----ll~~~~~~v~~~a~~~L~~L 666 (968)
.++++++-..|+.++.. +..++. .+|..++ -+-.+|+.++.+-...+.|+
T Consensus 206 LKhIIrCYlRLsdnpra---r~aL~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 206 LKHIIRCYLRLSDNPRA---REALRQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHHHHHHTTSTTH---HHHHHH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHH---HHHHHH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 89999999999865443 334443 2332111 11234667777777777766
No 166
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.17 Score=58.91 Aligned_cols=353 Identities=14% Similarity=0.147 Sum_probs=188.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHH
Q 002091 470 RLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPL 549 (968)
Q Consensus 470 ~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L 549 (968)
-|.++++-+|-...+.|..|-.. .+. ...+|.+...|....+.+|++|.-|++.+-... ..++ -.+-+.+
T Consensus 107 DLQHPNEyiRG~TLRFLckLkE~-----ELl-epl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L~-pDapeLi 176 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKLKEP-----ELL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHLI-PDAPELI 176 (948)
T ss_pred hccCchHhhcchhhhhhhhcCcH-----HHh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhhc-CChHHHH
Confidence 36777777777666666555211 111 235677777788889999999999998885321 1111 1122223
Q ss_pred HHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHh---hccCCHHHHHHHHHHHHHhccCC
Q 002091 550 VDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSL---INLTGPNVQQRILQTFNALCRSP 626 (968)
Q Consensus 550 v~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~l---l~~~~~~~~~~al~~L~~L~~~~ 626 (968)
-++|.... ++..+.+|.-.|...-. +.++.-+... +.+-++.++-.++..+...|..
T Consensus 177 ~~fL~~e~--DpsCkRNAFi~L~~~D~-----------------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~- 236 (948)
T KOG1058|consen 177 ESFLLTEQ--DPSCKRNAFLMLFTTDP-----------------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA- 236 (948)
T ss_pred HHHHHhcc--CchhHHHHHHHHHhcCH-----------------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc-
Confidence 34444332 25667777665544321 1222222222 2233456666666666666642
Q ss_pred ChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHH
Q 002091 627 SAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGI 706 (968)
Q Consensus 627 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~ 706 (968)
++. .....+..+..+|.+.++.++..|+..|.+|+ .... .+ ..+...+++++...++..++.-.+--
T Consensus 237 -~p~-----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~-al-----k~Aa~~~i~l~~kesdnnvklIvldr 303 (948)
T KOG1058|consen 237 -NPA-----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPT-AL-----KAAASTYIDLLVKESDNNVKLIVLDR 303 (948)
T ss_pred -CHH-----HhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHH-HH-----HHHHHHHHHHHHhccCcchhhhhHHH
Confidence 111 11346788889999889999999999999997 2221 11 12445566665544443343333333
Q ss_pred HhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHH-HHHHHHHcCChHHHHHHhhc
Q 002091 707 LSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE-WQKRAAEAGVIPKLVQLLEY 784 (968)
Q Consensus 707 L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~-~~~~~~~~g~i~~Lv~lL~~ 784 (968)
|..+.. +...- .|.+--++.+|.+ ++-+++..+......|..+.+-+ +.+.+ +..++..--. =+.
T Consensus 304 l~~l~~~~~~il-----~~l~mDvLrvLss------~dldvr~Ktldi~ldLvssrNvediv~~L-kke~~kT~~~-e~d 370 (948)
T KOG1058|consen 304 LSELKALHEKIL-----QGLIMDVLRVLSS------PDLDVRSKTLDIALDLVSSRNVEDIVQFL-KKEVMKTHNE-ESD 370 (948)
T ss_pred HHHHhhhhHHHH-----HHHHHHHHHHcCc------ccccHHHHHHHHHHhhhhhccHHHHHHHH-HHHHHhcccc-ccc
Confidence 333332 22211 1233445556666 67889999988888888752222 11111 1110000000 001
Q ss_pred CChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhh
Q 002091 785 GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGAC 864 (968)
Q Consensus 785 ~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 864 (968)
.+..-|..-..+++.++..=+ =+.+.+|+.|++.+.+.|+...
T Consensus 371 ~~~~yRqlLiktih~cav~Fp-------------------------------------~~aatvV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 371 DNGKYRQLLIKTIHACAVKFP-------------------------------------EVAATVVSLLLDFISDSNEAAA 413 (948)
T ss_pred cchHHHHHHHHHHHHHhhcCh-------------------------------------HHHHHHHHHHHHHhccCCHHHH
Confidence 122446666666666652111 1456689999999999887644
Q ss_pred HHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHh-cCCChHHHHHHHHHHHHHhcCh
Q 002091 865 EASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFL-SSPSPKLQEKALDSVERIFRLP 922 (968)
Q Consensus 865 ~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 922 (968)
...+.-+.... ++..+.+..+ ++.++.-+ .-.+..+.+-|+|++..+....
T Consensus 414 s~vl~FvrE~i--ek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 414 SDVLMFVREAI--EKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHHHHH--HhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 33333333322 1122233222 34444444 3356778899999998886443
No 167
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.34 E-value=1.1 Score=45.55 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcC-----CHHHHHHHHHHHHHhccCch--hhHHHhhcCchHHH
Q 002091 436 QASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG-----PESVKMRMATTLAEMELTDH--HKASLLEGNVLGPL 508 (968)
Q Consensus 436 ~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~-----~~~~~~~aa~~L~~L~~~~~--~~~~i~~~g~i~~L 508 (968)
.-..+|...|.-++.|++.|..+.++..--.+-.+|..+ .+-.|..+.+++..|..+++ .-.-+...++||..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345678888888899999999999887755566666544 35788899999999966553 33345578999999
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcc
Q 002091 509 LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPV 588 (968)
Q Consensus 509 v~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~ 588 (968)
++.+..|+...+..|..++.++-.++. |+..+...... -.....+|++++
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~---------GL~YiCqt~eR--------F~av~~~L~kmv------------- 223 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDV---------GLYYICQTAER--------FSAVALVLGKMV------------- 223 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccc---------cHHHHHHhHHH--------HHHHHHHHHHHH-------------
Confidence 999999999999999999888754332 33333322221 111222333333
Q ss_pred ccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhh
Q 002091 589 TLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQ 637 (968)
Q Consensus 589 ~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~ 637 (968)
..+.+..++.+.++++++..+|+.. ...|..++.
T Consensus 224 ------------~~l~~~ps~RllKhviRcYlrLsdn---prar~aL~~ 257 (293)
T KOG3036|consen 224 ------------FQLVSMPSPRLLKHVIRCYLRLSDN---PRARAALRS 257 (293)
T ss_pred ------------HHHhcCCCHHHHHHHHHHHHHhcCC---HHHHHHHHh
Confidence 2344556778888888888888753 444445443
No 168
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=2.7 Score=51.61 Aligned_cols=356 Identities=12% Similarity=0.077 Sum_probs=188.4
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCC-HHHHHHHHHHHHHhccCchhhHHH
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGP-ESVKMRMATTLAEMELTDHHKASL 499 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~-~~~~~~aa~~L~~L~~~~~~~~~i 499 (968)
+.+..|.+.|++.|..++-.|++-+..+....+ ..+ ...++...++++.... +..-..++-+|..|+...-.....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 667888899999999999999999999975544 111 1234566666665554 556667788888886432111100
Q ss_pred hhcCchHHHHHhhhcC--------CHHHHHHHHHHHHHhcC-CCcc-HHHHHHcCChHHHHHHhcccCCCCcchHHHHHH
Q 002091 500 LEGNVLGPLLHLVSRG--------DIQMKKVAVKALRNLSS-VPQN-GLQMIKEGAVGPLVDLLLHHSSSSSSLREETAT 569 (968)
Q Consensus 500 ~~~g~i~~Lv~lL~~~--------~~~~~~~a~~aL~~Ls~-~~~~-~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~ 569 (968)
. ..++|.+++-|.-+ ...+|.+|+-+.+.++. +..+ -+-++..=+-..|+..+.+.. ...+..|.+
T Consensus 418 l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre---vncRRAAsA 493 (1133)
T KOG1943|consen 418 L-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDRE---VNCRRAASA 493 (1133)
T ss_pred H-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch---hhHhHHHHH
Confidence 0 23556666555432 34689999999998884 3332 111222111222344455554 667888888
Q ss_pred HHHHhhcC-cccccCC-------------------CCccccccchhHHHHHHH-hh----ccCCHHHHHHHHHHHHHhcc
Q 002091 570 AIMHLAVS-TMYQESS-------------------QTPVTLLESDKEIFMLFS-LI----NLTGPNVQQRILQTFNALCR 624 (968)
Q Consensus 570 ~L~~La~~-~~~~~~~-------------------~~~~~il~~~~~i~~l~~-ll----~~~~~~~~~~al~~L~~L~~ 624 (968)
++-...+- +...+.. +..+.+-..++....++. ++ .+=++.+++.+.++|.+|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 88776652 2221110 001112222233333332 22 24478899999999999864
Q ss_pred CCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhH--HHHhhc---cc---cHHHH-HHHhccCC
Q 002091 625 SPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI--IREHVG---QK---CLETL-VTIIQSSH 695 (968)
Q Consensus 625 ~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~--~~~~~~---~~---~i~~L-v~lL~~~~ 695 (968)
. .. .....+.++.|+....+.+...+..+..+...+......-. .....+ .+ .++.+ ...+....
T Consensus 574 ~-~p-----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~ 647 (1133)
T KOG1943|consen 574 T-EP-----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQ 647 (1133)
T ss_pred h-hH-----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccch
Confidence 2 11 11223567777777777777777766665555441110000 000000 01 11111 11122211
Q ss_pred CHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCC---CHHHHHHHHH
Q 002091 696 NEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT---NLEWQKRAAE 771 (968)
Q Consensus 696 ~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~---~~~~~~~~~~ 771 (968)
..-.+...+..+.++.. .........-.+.-..+.+.+.. ++ .++..+.+++..++... ++.. .
T Consensus 648 ~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~------~n-~i~~~av~av~~l~s~y~~~d~~~-----~ 715 (1133)
T KOG1943|consen 648 GTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL------PN-QIRDAAVSAVSDLVSTYVKADEGE-----E 715 (1133)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc------hH-HHHHHHHHHHHHHHHHHHhcCchh-----h
Confidence 23345556667777776 54444444433333444444423 33 88999999999888641 1111 0
Q ss_pred cCChHHHHHHhhcC-ChHHHHHHHHHHhhhc
Q 002091 772 AGVIPKLVQLLEYG-TTLTKEHAATSLARFS 801 (968)
Q Consensus 772 ~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~nl~ 801 (968)
...+...+.-+.+. +..++.-...++.++.
T Consensus 716 ~~li~~~ls~~~~~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 716 APLITRYLSRLTKCSEERIRRGLILALGVLP 746 (1133)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHccCc
Confidence 12233444444444 4466666666666654
No 169
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.31 E-value=0.74 Score=47.47 Aligned_cols=228 Identities=15% Similarity=0.213 Sum_probs=139.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC--CHHHHHHHHHHHHHhcCCCccHHHHH
Q 002091 464 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSSVPQNGLQMI 541 (968)
Q Consensus 464 v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~ 541 (968)
+..+.+....++...+.+.+-.|..+ ....+++.|+..|.+. .|-+|-.|..+|.++.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~----------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~---------- 97 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM----------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG---------- 97 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh----------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------
Confidence 45555555555555555666665433 3456889999988765 5788889999999874
Q ss_pred HcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccccc---------CCCCccccccchhHHHHH-HHhhccCCHHH
Q 002091 542 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE---------SSQTPVTLLESDKEIFML-FSLINLTGPNV 611 (968)
Q Consensus 542 ~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~---------~~~~~~~il~~~~~i~~l-~~ll~~~~~~~ 611 (968)
..+.++.+-++.+++. ..+++.+..++..+-..+.... ..|... .....+..+ ..+++.+.+..
T Consensus 98 ~~~~~~~l~k~~~dp~---~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~ 171 (289)
T KOG0567|consen 98 DPESLEILTKYIKDPC---KEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLF 171 (289)
T ss_pred chhhHHHHHHHhcCCc---cccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHH
Confidence 2234455555554333 5677767667666643211111 001111 112223333 34445555555
Q ss_pred HHH-HHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHH
Q 002091 612 QQR-ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTI 690 (968)
Q Consensus 612 ~~~-al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~l 690 (968)
.++ +...|.|+. +. .+|..|.+=+..++.-.|..++.++..|- .+..++.|.+.
T Consensus 172 ~Ry~amF~LRn~g----~E---------eaI~al~~~l~~~SalfrhEvAfVfGQl~------------s~~ai~~L~k~ 226 (289)
T KOG0567|consen 172 ERYRAMFYLRNIG----TE---------EAINALIDGLADDSALFRHEVAFVFGQLQ------------SPAAIPSLIKV 226 (289)
T ss_pred HHHhhhhHhhccC----cH---------HHHHHHHHhcccchHHHHHHHHHHHhhcc------------chhhhHHHHHH
Confidence 444 444444431 22 25666777777778888899999998885 34578888888
Q ss_pred hccC-CCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhcc
Q 002091 691 IQSS-HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT 758 (968)
Q Consensus 691 L~~~-~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~ 758 (968)
|... ..+-++..|+.+|+.++.. ..++.|.+++.+ +..-+++.+..+|-.+-
T Consensus 227 L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D------~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 227 LLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGD------EERVVRESCEVALDMLE 279 (289)
T ss_pred HHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCC------cHHHHHHHHHHHHHHHH
Confidence 7665 4667889999999998852 245667777777 56667777777665444
No 170
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.27 E-value=0.0087 Score=46.82 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHh
Q 002091 476 ESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNL 530 (968)
Q Consensus 476 ~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 530 (968)
+.+|..|+++|.+++........-....+++.|+.+|+++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999876554444445578999999999999999999999999876
No 171
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.21 E-value=0.015 Score=51.41 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc
Q 002091 700 IASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA 772 (968)
Q Consensus 700 ~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~ 772 (968)
+...+++|+||+. ++.....+.+.|+++.++..-.-.. .++.++|.|++++.||+.+ +++.++.+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~----~nP~irEwai~aiRnL~e~-n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDD----HNPFIREWAIFAIRNLCEG-NPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCc----ccHHHHHHHHHHHHHHHhC-CHHHHHHHHhc
Confidence 5567899999999 9999999999999999998765422 6788999999999999998 89988877654
No 172
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=3.2 Score=49.19 Aligned_cols=233 Identities=15% Similarity=0.135 Sum_probs=116.3
Q ss_pred HHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCC------
Q 002091 689 TIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT------ 761 (968)
Q Consensus 689 ~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~------ 761 (968)
.++.+ ...-+...|++++.+|.. +...... ++..|--++.+ +...+|-.|..+|..++...
T Consensus 252 s~l~~-K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flss------p~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 252 SCLRH-KSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSS------PKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHhc-hhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcC------cHHHHHHHHHHHHHHHHHhCCccccc
Confidence 34444 344577888888888887 4433222 56667777777 77888999999888877541
Q ss_pred -CHHHHHHHHHcC---ChHHHHHHhhcCChH----HHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCC
Q 002091 762 -NLEWQKRAAEAG---VIPKLVQLLEYGTTL----TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 833 (968)
Q Consensus 762 -~~~~~~~~~~~g---~i~~Lv~lL~~~~~~----v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~ 833 (968)
+.+.-..+.+.+ ..+.+..+|..|... +....+...++++..-.-.. .. .....|
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivv-----vd-------ai~sLc----- 382 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVV-----VD-------AIRSLC----- 382 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEe-----HH-------HHHHHH-----
Confidence 344444443332 345566777766543 33333334444432110000 00 000000
Q ss_pred ccCcccchHHhhcCChHHHHhhccC-------------------CChhhhHHHHHHHHhhh-cccccchhh---------
Q 002091 834 LCGIESSFCLLEANAVRPLVRVLED-------------------PDHGACEASLDALVTLI-EGERLQNGS--------- 884 (968)
Q Consensus 834 ~c~~~~~~~l~~~g~i~~Lv~lL~~-------------------~~~~v~~~al~aL~~L~-~~~~~~~~~--------- 884 (968)
..+-.-..+.+..|-++|.+ .++.-++.++.-|+... +.+..+-..
T Consensus 383 -----~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~E 457 (865)
T KOG1078|consen 383 -----LKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKE 457 (865)
T ss_pred -----hhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 01111122233333344432 13334444555555544 222111110
Q ss_pred --HHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccC-CchhhhhcccCCchhhHHHHHHHHHHh
Q 002091 885 --KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSA-QMPLVDLTQRGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 885 --~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~Lv~ll~~~~~~~~~~A~~aL~~L~ 959 (968)
.......-+..+.+...-.+..++-.|+.++.++....+. -... .-.|...+.+.|.++|.+|.-+|..+.
T Consensus 458 gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 458 GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 0111122333344444445677777888888877621110 0111 123566778899999999999998886
No 173
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=3 Score=51.18 Aligned_cols=252 Identities=13% Similarity=0.084 Sum_probs=143.7
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhH
Q 002091 639 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFT 717 (968)
Q Consensus 639 g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~ 717 (968)
+++..|+..+++.+..++=.|++-+..++..-+.+. ...++...+.++....++.....|+-+|+.|+. .--.-
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L-----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL-----ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH-----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 467888888888899999999999999984433222 223556666666555556677788888888775 11111
Q ss_pred HHHHHcCCHHHHHHHhhcCCCC--CCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHH
Q 002091 718 QWLLDAGALPIVLNFLKNGRQN--DPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAAT 795 (968)
Q Consensus 718 ~~l~~~g~l~~Lv~lL~~~~~~--~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~ 795 (968)
..+ ..+++.++.-|.-.... ......+|..||.++|.++..+++...+.+...=.--.|+..+-+.+-.+|++|+.
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 100 12345555554331111 11346799999999999999876665444433222233444444566688999988
Q ss_pred HHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 796 SLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 796 aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
|+-...-..++ .+.| +.+....|.- ++.+..
T Consensus 494 AlqE~VGR~~n------~p~G------------------------------------i~Lis~~dy~-------sV~~rs 524 (1133)
T KOG1943|consen 494 ALQENVGRQGN------FPHG------------------------------------ISLISTIDYF-------SVTNRS 524 (1133)
T ss_pred HHHHHhccCCC------CCCc------------------------------------hhhhhhcchh-------hhhhhh
Confidence 88766532222 1122 2333332221 111111
Q ss_pred cccccchhhHHHHhcC-cHHHHHHH-----hcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhcccCCchhhH
Q 002091 876 EGERLQNGSKVLEDAN-AIDRMVRF-----LSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKS 949 (968)
Q Consensus 876 ~~~~~~~~~~~i~~~~-~i~~L~~l-----l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~ 949 (968)
+.+...+..+.+.. ..+++++= +.+=++.+++.+.+.|.+|.... .+.++....++|++-+.+++...+.
T Consensus 525 --Ncy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~--pk~~a~~~L~~lld~~ls~~~~~r~ 600 (1133)
T KOG1943|consen 525 --NCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE--PKYLADYVLPPLLDSTLSKDASMRH 600 (1133)
T ss_pred --hHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh--HHhhcccchhhhhhhhcCCChHHhh
Confidence 00112222233222 22233222 34568999999999999974321 2233444578888888888877776
Q ss_pred H
Q 002091 950 L 950 (968)
Q Consensus 950 ~ 950 (968)
-
T Consensus 601 g 601 (1133)
T KOG1943|consen 601 G 601 (1133)
T ss_pred h
Confidence 4
No 174
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.11 E-value=0.52 Score=47.93 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHH
Q 002091 698 EEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 777 (968)
Q Consensus 698 ~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~ 777 (968)
.-...|+..|-.++++++.+...+++.+--.+-.+|..++.+ ++.+.+|-.++++++.+...++.++...+...+++|.
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~-r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKS-RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccC-CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 355788888888899999999999999888888888775543 3678999999999999999878888889999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 778 LVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 778 Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
.++.+..|+...|..|...+..+-.
T Consensus 173 CLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988864
No 175
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.05 E-value=7.1 Score=49.87 Aligned_cols=150 Identities=11% Similarity=0.163 Sum_probs=97.0
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHh-ccCchhhHH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEM-ELTDHHKAS 498 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L-~~~~~~~~~ 498 (968)
.+.+..++..|..+-..+|..|+++|.++..-++... .....-..+-..+...+..+|+.|...++.. ...++.-.+
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 4567778888888889999999999999875443211 0111112233445566778999999988765 333333222
Q ss_pred HhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc
Q 002091 499 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST 578 (968)
Q Consensus 499 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 578 (968)
. -..+.+-..+....+|+.+.+.|+.+|...++-..+ +...+++|...+++...++.-+..++.++...+
T Consensus 893 y-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 893 Y-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred H-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 2 123344445567789999999999999644443333 345666776655543448888999999998765
Q ss_pred ccc
Q 002091 579 MYQ 581 (968)
Q Consensus 579 ~~~ 581 (968)
...
T Consensus 963 ~~~ 965 (1692)
T KOG1020|consen 963 VPE 965 (1692)
T ss_pred CCc
Confidence 433
No 176
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.03 E-value=0.033 Score=58.34 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=107.0
Q ss_pred cChHHHHHHHHHHHHhcc-C--hhHHHHhhh-ccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHH
Q 002091 391 RRIEERKLAVALLLELST-C--NTLRDQIGD-VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKH 466 (968)
Q Consensus 391 ~~~~~~~~A~~~L~~Ls~-~--~~~~~~i~~-~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~ 466 (968)
.+++.+.+|+..|..+.+ + ......+.. ....+..+...+++....+...|+.++..++..-.+.-.-.-...++.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 457788888888888876 3 122222221 123445666677777778888999999988744333221112346788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCc-hHHHHHhhhcCCHHHHHHHHHHHHHhcCCCc-cHHHHHH--
Q 002091 467 LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNV-LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQ-NGLQMIK-- 542 (968)
Q Consensus 467 Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~-- 542 (968)
|++.+.+++..++..|..+|..+...-... ... ++.+...+.+.++.+|..++..|..+...-. ....+-.
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 889999988899999999998885543311 112 4566677788899999999999999875322 1111111
Q ss_pred --cCChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 543 --EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 543 --~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
...++.+...+.+.+ +++++.|-.++..+..
T Consensus 174 ~~~~l~~~l~~~l~D~~---~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDAD---PEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHH
Confidence 236677888888776 8999999999888865
No 177
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.99 E-value=0.0087 Score=50.23 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=35.4
Q ss_pred ccccccccCCCC-cee-cCCchhhhHHHHHHHHhc--CCCCCCCCCCcCC
Q 002091 266 FYCPITRDVMVD-PVE-TSSGQTFERSAIEKWFSD--GNNLCPLTMTVLD 311 (968)
Q Consensus 266 ~~cpi~~~~m~d-pv~-~~~g~t~~r~~i~~~~~~--~~~~CP~t~~~l~ 311 (968)
-.||.|...=.| |++ -.|||.|-..||.+|++. ++.+||.|+++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 446666665555 655 479999999999999974 4679999998763
No 178
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.89 E-value=0.0042 Score=68.15 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=42.6
Q ss_pred CCcccccccccCCCCceecCCchhhhHHHHHHHHh----cCCCCCCCCCCcCCC
Q 002091 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS----DGNNLCPLTMTVLDT 312 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~----~~~~~CP~t~~~l~~ 312 (968)
-.+..|.+|.+.-.||+...|.|+|||-||.++.. ..+-+||.|...|+-
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 36788999999999999999999999999998854 235789999877743
No 179
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.83 E-value=4.3 Score=46.71 Aligned_cols=358 Identities=18% Similarity=0.154 Sum_probs=185.0
Q ss_pred hHHHHHhhhcCCH---HHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccc
Q 002091 505 LGPLLHLVSRGDI---QMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 581 (968)
Q Consensus 505 i~~Lv~lL~~~~~---~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 581 (968)
+|.|+..|.+.++ ...+..+.+|..+|..++--..++- ..+..+-....... ..+....++.+|.++.......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~--~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSES--SSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHhcccc
Confidence 3667777776544 6788899999999987665444432 33334433333222 2344555666666665533221
Q ss_pred cCCCCccccccchhHHHHHHHhhccC-------CHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhc-----
Q 002091 582 ESSQTPVTLLESDKEIFMLFSLINLT-------GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE----- 649 (968)
Q Consensus 582 ~~~~~~~~il~~~~~i~~l~~ll~~~-------~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~----- 649 (968)
.. ............++.++.+.... ++.+...+..++..+++.-+...-+.. +..+..+..
T Consensus 78 ~~-~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~------~~~~~~lf~~~~~~ 150 (415)
T PF12460_consen 78 KQ-FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI------LDELYSLFLSPKSF 150 (415)
T ss_pred cc-cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH------HHHHHHHHcccccc
Confidence 10 00111122223566666554311 234445555555555444332222222 222222221
Q ss_pred -----c------CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC---CHH
Q 002091 650 -----H------DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE---VPQ 715 (968)
Q Consensus 650 -----~------~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~---~~~ 715 (968)
. .......-...++..+-.+..-. -....+..++.+..+..+...+..++.+++.|.. +.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~ 225 (415)
T PF12460_consen 151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD 225 (415)
T ss_pred CCCCccccccccccccHHHHHHHHHHcCCcccCcc-----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh
Confidence 0 11122222233444443111101 0113677788887776667788888888777765 122
Q ss_pred hHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhcc----CCCCHHHHHHHHHcCChHHHHHHhhcCChHHHH
Q 002091 716 FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT----APTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKE 791 (968)
Q Consensus 716 ~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~----~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~ 791 (968)
..+ ..+..+...+.+ . .....+..+..++.+++ ..+++.. ...+..|+.++.+ +++..
T Consensus 226 ~l~-----~~l~~~~~~~~~-~----~~~~~~~~~~~~~~Wi~KaLv~R~~~~~------~~~~~~L~~lL~~--~~~g~ 287 (415)
T PF12460_consen 226 DLD-----EFLDSLLQSISS-S----EDSELRPQALEILIWITKALVMRGHPLA------TELLDKLLELLSS--PELGQ 287 (415)
T ss_pred hHH-----HHHHHHHhhhcc-c----CCcchhHHHHHHHHHHHHHHHHcCCchH------HHHHHHHHHHhCC--hhhHH
Confidence 111 122222222211 1 12233444444444444 3333322 2235667777765 77888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhc----CChHHHHhhccCCChhhhHHH
Q 002091 792 HAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEA----NAVRPLVRVLEDPDHGACEAS 867 (968)
Q Consensus 792 ~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~----g~i~~Lv~lL~~~~~~v~~~a 867 (968)
.++.++.-+..+.+.+-.. . ...+..-|.+. ..++.|++-.+..+...+..-
T Consensus 288 ~aA~~f~il~~d~~~~l~~---~---------------------~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 288 QAAKAFGILLSDSDDVLNK---E---------------------NHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred HHHHHHhhHhcCcHHhcCc---c---------------------ccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 9999999888653321111 0 01111222222 367778887777777788889
Q ss_pred HHHHHhhhcccccchhhHHHHh-cCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh
Q 002091 868 LDALVTLIEGERLQNGSKVLED-ANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP 922 (968)
Q Consensus 868 l~aL~~L~~~~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 922 (968)
+.||..+... . +....+.+ ...++.+++-+..+|+.++..++.+|..+..+.
T Consensus 344 L~ALs~ll~~--v-P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 344 LTALSHLLKN--V-PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhh--C-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999821 1 11111112 245778888889999999999999999998665
No 180
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.48 Score=55.37 Aligned_cols=348 Identities=14% Similarity=0.139 Sum_probs=187.0
Q ss_pred hhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHH
Q 002091 429 MASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPL 508 (968)
Q Consensus 429 lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~L 508 (968)
-|++++.-+|-..++.|..|-. ++ +. ...+|.+...|.+.+.-+|.+|.-+++.+-.+.+. .+ .++-+.+
T Consensus 107 DLQHPNEyiRG~TLRFLckLkE-~E----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~~~--L~--pDapeLi 176 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKLKE-PE----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH--LI--PDAPELI 176 (948)
T ss_pred hccCchHhhcchhhhhhhhcCc-HH----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh--hc--CChHHHH
Confidence 3667788777666666655411 11 11 12345555668888899999999999888433111 01 2222222
Q ss_pred HHh-hhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCc
Q 002091 509 LHL-VSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTP 587 (968)
Q Consensus 509 v~l-L~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~ 587 (968)
-+. +...++..+++|.-.|... +++ .++..|..-+.+-..-.+.++.-.+..+...+.....
T Consensus 177 ~~fL~~e~DpsCkRNAFi~L~~~--D~E--------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~------- 239 (948)
T KOG1058|consen 177 ESFLLTEQDPSCKRNAFLMLFTT--DPE--------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA------- 239 (948)
T ss_pred HHHHHhccCchhHHHHHHHHHhc--CHH--------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH-------
Confidence 333 3556899999998887765 221 1233333322221111134444455555555542211
Q ss_pred cccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC-ChhHHHHHHHHHHHh
Q 002091 588 VTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCL 666 (968)
Q Consensus 588 ~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~L 666 (968)
.....+..+..+++++++.+.-.+.++|..|+..+ ..++ .+...+++++... +.+++.-..--|..+
T Consensus 240 ----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p--~alk------~Aa~~~i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 240 ----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP--TALK------AAASTYIDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred ----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH--HHHH------HHHHHHHHHHHhccCcchhhhhHHHHHHH
Confidence 12356778888888888888888888888776432 1111 1344455555332 334444334444444
Q ss_pred ccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhc-----CCCCCC
Q 002091 667 VDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKN-----GRQNDP 741 (968)
Q Consensus 667 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~-----~~~~~~ 741 (968)
. ...... -.|.+-.++.+|.+ .+-+++..++.+...|+. ..-+.-++.+|+. .+...-
T Consensus 308 ~-~~~~~i-----l~~l~mDvLrvLss-~dldvr~Ktldi~ldLvs----------srNvediv~~Lkke~~kT~~~e~d 370 (948)
T KOG1058|consen 308 K-ALHEKI-----LQGLIMDVLRVLSS-PDLDVRSKTLDIALDLVS----------SRNVEDIVQFLKKEVMKTHNEESD 370 (948)
T ss_pred h-hhhHHH-----HHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhh----------hccHHHHHHHHHHHHHhccccccc
Confidence 3 111111 12344455566655 456677777766666554 2233334444432 111111
Q ss_pred chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccC
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFS 821 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~ 821 (968)
.....|...+.++...+.. -++.. +.+++.|++++.+.++........-+......-++
T Consensus 371 ~~~~yRqlLiktih~cav~-Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--------------- 429 (948)
T KOG1058|consen 371 DNGKYRQLLIKTIHACAVK-FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--------------- 429 (948)
T ss_pred cchHHHHHHHHHHHHHhhc-ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch---------------
Confidence 2345677778888877775 55554 34589999999988764433333333222211110
Q ss_pred CCCCcccccCCCccCcccchHHhhcCChHHHHhhccC-CChhhhHHHHHHHHhhh
Q 002091 822 PPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLED-PDHGACEASLDALVTLI 875 (968)
Q Consensus 822 ~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~~L~ 875 (968)
..+..+..|+.-+.. ...++...++|.+...+
T Consensus 430 ----------------------Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 430 ----------------------LRASIIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred ----------------------HHHHHHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 233456666665553 45678888888888887
No 181
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.003 Score=64.94 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=39.3
Q ss_pred ccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
|.|-||++-+.+||++.|||+||..|--+.+.. ...|++|++..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc
Confidence 889999999999999999999999998887754 46899998865
No 182
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0053 Score=63.32 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=42.9
Q ss_pred ccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 002091 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSI 314 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~ 314 (968)
=.|+||..-|.-||.++|+|.||--||+--...+..+||+|+.++++..
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 3599999999999999999999999999755467789999999997643
No 183
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.70 E-value=0.39 Score=53.12 Aligned_cols=194 Identities=14% Similarity=0.056 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHhhccCCCCHHHH-HHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccC
Q 002091 743 RFQVVENAVGALRRFTAPTNLEWQ-KRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFS 821 (968)
Q Consensus 743 ~~~v~e~a~~aL~~L~~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~ 821 (968)
+.-++..|..++.-+..+ +..+ ....-.+....+...+.+.....|..++|+++|++..
T Consensus 404 ~~lv~~aA~Ra~~VyVLH--p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdA------------------ 463 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLH--PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDA------------------ 463 (728)
T ss_pred HHHHHHHHHhhceeEEec--cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHH------------------
Confidence 344666777777666664 2222 1222334456666667777778999999999999731
Q ss_pred CCCCcccccCCCccCcccchHHhhcCChHHHHhhcc---CCChhhhHHHHHHHHhhh-cccccch-hhHHHHhcCcHHHH
Q 002091 822 PPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE---DPDHGACEASLDALVTLI-EGERLQN-GSKVLEDANAIDRM 896 (968)
Q Consensus 822 ~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~---~~~~~v~~~al~aL~~L~-~~~~~~~-~~~~i~~~~~i~~L 896 (968)
.|.++=++++..+=...-.+..+.++-. ..+..|+.++..||.|++ .-...++ ....+.+....+.+
T Consensus 464 --------L~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~ 535 (728)
T KOG4535|consen 464 --------LIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALI 535 (728)
T ss_pred --------HHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcc
Confidence 1111112222222111112333333222 245679999999999998 1100111 22233333222333
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcc---cCCchhhhhccc-CCchhhHHHHHHHHHHhhcccC
Q 002091 897 VRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGK---SAQMPLVDLTQR-GNSSMKSLSARVLAHLNVLQDQ 964 (968)
Q Consensus 897 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~~Lv~ll~~-~~~~~~~~A~~aL~~L~~~~~~ 964 (968)
.......+-.|+=+++.++.|+|+++-+.-+-.. .....|..++.+ .|-.+|.+|+.+|.+-..-.++
T Consensus 536 ~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~ 607 (728)
T KOG4535|consen 536 STVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQY 607 (728)
T ss_pred cceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccc
Confidence 3333456778999999999999998865322111 123445555544 7889999999999876554443
No 184
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.59 E-value=0.0053 Score=65.59 Aligned_cols=33 Identities=9% Similarity=0.361 Sum_probs=30.4
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHH
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWF 296 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~ 296 (968)
+++.||||...++||+|++|||+.||.|-..-+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 689999999999999999999999999987554
No 185
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0063 Score=60.46 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=29.8
Q ss_pred ccccccccCCCCceecCCchhhhHHHHHHHHh
Q 002091 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFS 297 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~ 297 (968)
=+|.+|++..+|||+.+.||-|||.||-+++-
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 37899999999999999999999999999873
No 186
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.49 E-value=0.041 Score=48.55 Aligned_cols=69 Identities=14% Similarity=0.333 Sum_probs=53.8
Q ss_pred CChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 002091 847 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 847 g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 920 (968)
..++|++.++.++|..||..|+.+|.|++ .. .....-.=...++.|.++..++++.|+..| ++|.++++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~----~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA----RGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 48999999999999999999999999998 22 111111234567888999999999997766 77777765
No 187
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=1.1 Score=56.71 Aligned_cols=240 Identities=16% Similarity=0.141 Sum_probs=121.5
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHH---HHHHhcc---C
Q 002091 596 EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVK---LFCCLVD---D 669 (968)
Q Consensus 596 ~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~---~L~~Ls~---~ 669 (968)
+..-|+.-+.+..-.+|+.++-+|..|-+++...++.+.+.+ ....+.+.+.+=.+.+|++|-+ +|..|+- +
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 334445555566778999999999999998888777766654 4566666665555666666554 4444431 1
Q ss_pred CChhHHHHhhccccHHHHHHHhccC----CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCC----
Q 002091 670 GDEAIIREHVGQKCLETLVTIIQSS----HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQND---- 740 (968)
Q Consensus 670 ~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~---- 740 (968)
.++... ....+..++.+|-.. ...+++.-++.++..|+. .....+ -.-...++.|++....-...-
T Consensus 1118 ~~~~~~----~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk-P~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1118 VTNGAK----GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK-PHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred cCCccc----HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc-chhhHHHHHHHHHccccchHHHHHH
Confidence 111100 112333444443322 356788888888888876 222111 001122344443333210000
Q ss_pred -CchhHHHHHHHHHHhhccCCCCHHHH---------HHHHHcCChHHHHHHhhcC-ChHHHHHHHHHHhhhcccCCCCCC
Q 002091 741 -PNRFQVVENAVGALRRFTAPTNLEWQ---------KRAAEAGVIPKLVQLLEYG-TTLTKEHAATSLARFSKNSLGLSR 809 (968)
Q Consensus 741 -~~~~~v~e~a~~aL~~L~~~~~~~~~---------~~~~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~nl~~~s~~l~~ 809 (968)
-....+..+++..+..=+..++|-+. +.-+-...+|.+.++++.+ .-..|..++..+..|+..-+. .
T Consensus 1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~--e 1270 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS--E 1270 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc--c
Confidence 00011122222222221111111111 0001123566666666655 335566666666666532110 0
Q ss_pred CCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 810 PIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
.-|..| ..+..|+..+++.|+.++.+-..|...|+
T Consensus 1271 mtP~sg-------------------------------Kll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1271 MTPYSG-------------------------------KLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred cCcchh-------------------------------HHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 001111 25667777778889999998888888888
No 188
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.007 Score=71.71 Aligned_cols=46 Identities=28% Similarity=0.592 Sum_probs=41.3
Q ss_pred CcccccccccCCCC-----ceecCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 264 QSFYCPITRDVMVD-----PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 264 ~~~~cpi~~~~m~d-----pv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
.+-.|+||.+.|.. |-.++|||.|...|+.+|++. ..+||.|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 46789999999999 789999999999999999987 67999998843
No 189
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.012 Score=63.46 Aligned_cols=47 Identities=19% Similarity=0.418 Sum_probs=40.4
Q ss_pred ccccccccCCC--Cc-eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 266 FYCPITRDVMV--DP-VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 266 ~~cpi~~~~m~--dp-v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
+.|-||+|-+. |= +++||+|.|-..||..|+.....+||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 78999999998 44 4689999999999999998777789999986643
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.21 E-value=0.72 Score=56.84 Aligned_cols=262 Identities=18% Similarity=0.183 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHhcc--CchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC----CCccHHHHHHcCChHH
Q 002091 475 PESVKMRMATTLAEMEL--TDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS----VPQNGLQMIKEGAVGP 548 (968)
Q Consensus 475 ~~~~~~~aa~~L~~L~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g~v~~ 548 (968)
..+.|.+|...|..|+. +++.+. ..++|.++.++.+..+.+|..|+.+|..+.. -+..-..+.-.-.+|.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 45788899999999965 445443 4578999999999999999999999998873 2222222333447888
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHHhhcCc------------ccccCCCCc--cccccch--------hHHHHHHHhhcc
Q 002091 549 LVDLLLHHSSSSSSLREETATAIMHLAVST------------MYQESSQTP--VTLLESD--------KEIFMLFSLINL 606 (968)
Q Consensus 549 Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~------------~~~~~~~~~--~~il~~~--------~~i~~l~~ll~~ 606 (968)
|-+++.+.+ ...++..-+..|+.||... .+-...++. ..-...+ ..-.....++..
T Consensus 512 L~~l~~d~~--~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd 589 (1431)
T KOG1240|consen 512 LNHLLNDSS--AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD 589 (1431)
T ss_pred hHhhhccCc--cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC
Confidence 888887743 1445555555555555310 000011111 1111111 112334566777
Q ss_pred CCHHHHHHHHHHHHHhccC-CChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHH
Q 002091 607 TGPNVQQRILQTFNALCRS-PSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLE 685 (968)
Q Consensus 607 ~~~~~~~~al~~L~~L~~~-~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~ 685 (968)
..+.++...+..+..||.+ +..+. ..-.++.|+.+|...+..+|.+-...+.-++..-.... ++...+|
T Consensus 590 ~~~~Vkr~Lle~i~~LC~FFGk~ks------ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs----~seyllP 659 (1431)
T KOG1240|consen 590 SPPIVKRALLESIIPLCVFFGKEKS------NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS----VSEYLLP 659 (1431)
T ss_pred CchHHHHHHHHHHHHHHHHhhhccc------ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee----HHHHHHH
Confidence 7888988888888888853 11100 01257889999998888888877776665542111110 1335566
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCC
Q 002091 686 TLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP 760 (968)
Q Consensus 686 ~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~ 760 (968)
.|.+-|.. .++-+...|+++|..|....-+++..+ ...+....-+|-+ ++..+|..++..+......
T Consensus 660 Ll~Q~ltD-~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~h------PN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 660 LLQQGLTD-GEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCH------PNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHhccC-cchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeC------chHHHHHHHHHHHHHHHhh
Confidence 66676766 456788899999888776322222211 1234455556667 7889999999999877764
No 191
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.014 Score=59.42 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=41.6
Q ss_pred CcccccccccCCCCceecC-CchhhhHHHHHHHHh-cCCCCCCCCCCcCCCC
Q 002091 264 QSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFS-DGNNLCPLTMTVLDTS 313 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~-~~~~~CP~t~~~l~~~ 313 (968)
.+..||+|++--.-|.++. |||.||-.||..-+. ...++||.|+++..+.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 5778999999999999876 999999999997442 3468999999876543
No 192
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.09 E-value=0.089 Score=46.52 Aligned_cols=61 Identities=18% Similarity=0.392 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHH
Q 002091 612 QQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAII 675 (968)
Q Consensus 612 ~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~ 675 (968)
+..+++++.+||. .++.+++.+++.|+++.++..+..+ +|-++++|+.++++|+ .+.+++.
T Consensus 3 K~~lvrlianl~~--~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~-e~n~eNQ 65 (102)
T PF09759_consen 3 KRDLVRLIANLCY--KNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLC-EGNPENQ 65 (102)
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHH-hCCHHHH
Confidence 4567888999985 4788999999999999999988654 6999999999999999 6555543
No 193
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.03 E-value=0.011 Score=56.66 Aligned_cols=44 Identities=20% Similarity=0.383 Sum_probs=37.4
Q ss_pred ccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
|.|-||.+=++.||++.|||.||-.|--+-+.. ...|-+|+..+
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 999999999999999999999998886655543 56899998765
No 194
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.95 E-value=0.31 Score=46.80 Aligned_cols=128 Identities=15% Similarity=0.271 Sum_probs=99.1
Q ss_pred HhhcCchHHHHHhhccCC------hhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCC-CHHHHHHHHHHH
Q 002091 635 LTQCSAIPVLVQLCEHDN------ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH-NEEEIASAMGIL 707 (968)
Q Consensus 635 i~~~g~i~~Lv~ll~~~~------~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~~Al~~L 707 (968)
+...+|+..|+.+++++. .++...++.++..|...+. .-.+.+....+.+++.++.... +..+...|+.+|
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~--vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI--VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc--CchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 344578999999998876 3677788888888873322 2235566678888999888764 788999999999
Q ss_pred hcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHH
Q 002091 708 SKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA 770 (968)
Q Consensus 708 ~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~ 770 (968)
-++.. ++.....+.+.=-++.|+..|+. ++..++.++...+-.|-...++.-++.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~------~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQV------SNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHc------CCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99999 77778888777788999999999 67889999988888777765555555443
No 195
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.94 E-value=0.21 Score=47.93 Aligned_cols=122 Identities=11% Similarity=0.191 Sum_probs=94.1
Q ss_pred HHhhcCchHHHHHhhhcCC------HHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHH
Q 002091 498 SLLEGNVLGPLLHLVSRGD------IQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAI 571 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~~------~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L 571 (968)
.+.+.|++..|++++.++. .+....++.++..|..+.-......+...|..++..+.....+ ..+...|+++|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d-~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMD-ASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcccccc-chHHHHHHHHH
Confidence 4667889999999998876 3677888999999876544333455556677788888755433 78899999999
Q ss_pred HHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCC
Q 002091 572 MHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP 626 (968)
Q Consensus 572 ~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~ 626 (968)
-++..++..... .+..+-.++.++..+..+++++|.+++..+..|....
T Consensus 85 Es~Vl~S~~ly~------~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 85 ESIVLNSPKLYQ------LVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHhCCHHHHH------HHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 999986655443 6666777889999999999999999999888886543
No 196
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.94 E-value=0.021 Score=57.92 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=38.7
Q ss_pred CcccccccccCCCCceec-CCchhhhHHHHHHHHhc-CCCCCCCCCCc
Q 002091 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSD-GNNLCPLTMTV 309 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~-~~~~CP~t~~~ 309 (968)
-+++|||+......||+- .|||.|+|..|...+.. -...||+-+-.
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 478999999999999984 79999999999998853 23569998755
No 197
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.88 E-value=1.1 Score=48.89 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=114.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhh--cCchHHHHHhhhcCCHHHHHHHHHHHHHhcCC---CccHHHH
Q 002091 466 HLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE--GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV---PQNGLQM 540 (968)
Q Consensus 466 ~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~---~~~~~~i 540 (968)
..+..|.......|+.+...|..+....-....+.+ ...+..+.+.++.+..+-+..|+.++.-++.. ......+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 344455555677888888888776432211111111 34677888889888877777888888888743 2344555
Q ss_pred HHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc-ccccCCCCccccccchhHHHHHHH--hhc-c---------C
Q 002091 541 IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST-MYQESSQTPVTLLESDKEIFMLFS--LIN-L---------T 607 (968)
Q Consensus 541 ~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~~il~~~~~i~~l~~--ll~-~---------~ 607 (968)
.+ ...|.|...+.+.+.. ...+..++.+|+-++.-. ...+. +...-..+..+.. ..+ . .
T Consensus 127 ~~-~~~~~L~~~l~d~s~~-~~~R~~~~~aLai~~fv~~~d~~~------~~~~~~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSAS-PKARAACLEALAICTFVGGSDEEE------TEELMESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred HH-HHHHHHHHHHhCCccc-hHHHHHHHHHHHHHHHhhcCChhH------HHHHHHHHHHHHHHHhcCcCCCcccccCCC
Confidence 54 4778888888876432 456667777777766421 11111 1100112221111 111 1 1
Q ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 608 GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 608 ~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
++.+...++.+..-|...-....+...+. ..++.|..+|.+++.+||..|..+|.-|-
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLE--EALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34677777766655554333334443333 35999999999999999999999888775
No 198
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.78 E-value=0.32 Score=57.47 Aligned_cols=202 Identities=15% Similarity=0.136 Sum_probs=141.6
Q ss_pred hhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHH-HhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHH
Q 002091 629 GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC-CLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGIL 707 (968)
Q Consensus 629 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~-~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L 707 (968)
+.-+......|+...|+++.....+..+..+..+|. .+...+.. ....++.+...++.....-....++.++
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 344445556789999999999999999998888888 44322211 1245556666665544333446788999
Q ss_pred hcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHH-cCChHHHHHHhhcC
Q 002091 708 SKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE-AGVIPKLVQLLEYG 785 (968)
Q Consensus 708 ~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~-~g~i~~Lv~lL~~~ 785 (968)
.||+. ++..++.+...-+++.+-.++.. .+...+..+...+.||..+ ..-+...+.+ ....+.....+...
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~e------e~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTE------ENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhc------ccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHhh
Confidence 99999 88888888888888877777666 5778999999999999996 4444455555 45666666667666
Q ss_pred ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhH
Q 002091 786 TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACE 865 (968)
Q Consensus 786 ~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 865 (968)
+.....+++.++..+..-..+ . |+- .+.-...-+.++.++.+.+.++++
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n--------------------~-------c~~----~~~~~~~~e~~~~~i~~~~~~~qh 688 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVEN--------------------H-------CSR----ILELLEWLEILVRAIQDEDDEIQH 688 (748)
T ss_pred hhHHhhhccccccchhhcchh--------------------h-------hhh----HHHhhcchHHHHHhhcCchhhhhh
Confidence 777888888777755532211 1 110 122234677888999999999999
Q ss_pred HHHHHHHhhh
Q 002091 866 ASLDALVTLI 875 (968)
Q Consensus 866 ~al~aL~~L~ 875 (968)
..+....|+.
T Consensus 689 rgl~~~ln~~ 698 (748)
T KOG4151|consen 689 RGLVIILNLF 698 (748)
T ss_pred hhhhhhhhHH
Confidence 9999888865
No 199
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.018 Score=59.29 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=39.2
Q ss_pred cccccccccCCC--Cce-ecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 265 SFYCPITRDVMV--DPV-ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 265 ~~~cpi~~~~m~--dpv-~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
..-|-||+.=+. |-+ ++||.|.|-+.|+.+|+..-...||+|+.+++|
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 467999987553 444 589999999999999997666789999998865
No 200
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.69 E-value=0.027 Score=45.47 Aligned_cols=59 Identities=27% Similarity=0.459 Sum_probs=42.1
Q ss_pred CCCCCCCCcCC-CCCCccCHhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHH
Q 002091 301 NLCPLTMTVLD-TSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDL 362 (968)
Q Consensus 301 ~~CP~t~~~l~-~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~ 362 (968)
..||+|++.|. +.....++++ ++.|.+|...+ .+||.++.++...+..++. .|++ |++|
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~--~~cP~~~~~~~~~~l~~~~-~l~~~i~~~ 63 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSH--GTDPVTGQPLTHEDLIPNL-ALKSAIQEW 63 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC--CCCCCCcCCCChhhceeCH-HHHHHHHhC
Confidence 57999999994 4444457777 99999999874 4699998888666655553 3443 5444
No 201
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.65 E-value=0.023 Score=60.42 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=41.1
Q ss_pred CcccccccccCCCC---ce-ecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCc
Q 002091 264 QSFYCPITRDVMVD---PV-ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILR 316 (968)
Q Consensus 264 ~~~~cpi~~~~m~d---pv-~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~ 316 (968)
..|+||||+..|.. -| +.+|||.|...+|.+-- ....||+|++++...+++
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 57999999999953 23 34999999999999872 345799999999876654
No 202
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.64 E-value=0.076 Score=48.24 Aligned_cols=71 Identities=17% Similarity=0.432 Sum_probs=58.2
Q ss_pred CChHHHHhhcc-CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 002091 847 NAVRPLVRVLE-DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 919 (968)
Q Consensus 847 g~i~~Lv~lL~-~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 919 (968)
..+..|+++|. +.|+.+...||.=|..++ .....++..+.+.|+-+.+.++++++|++|+..|+.++.++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~v--r~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFV--RHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHH--HH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHH--HHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 47889999995 457778888888888888 112378888899999999999999999999999999999885
No 203
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=9.7 Score=47.56 Aligned_cols=220 Identities=14% Similarity=0.152 Sum_probs=119.7
Q ss_pred ccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CH-HhHHHHHHcCCH
Q 002091 649 EHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VP-QFTQWLLDAGAL 726 (968)
Q Consensus 649 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~-~~~~~l~~~g~l 726 (968)
++.+..+|..+..+|..++...+......-.-......|..-+++. ....+...+.+|..|.. .+ +... ++..-+.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~-~i~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCD-LIPKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 3447889999999999998442221111111112344444444443 33467777777777766 22 2222 2222233
Q ss_pred HHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcC------ChHHHHHHhhcC----ChHHHHHHHHH
Q 002091 727 PIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG------VIPKLVQLLEYG----TTLTKEHAATS 796 (968)
Q Consensus 727 ~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g------~i~~Lv~lL~~~----~~~v~~~Aa~a 796 (968)
+.++.+ +. .+...+..+..+|..++.. +...+.| .+...+..+..+ ...+......+
T Consensus 742 EvIL~~-Ke------~n~~aR~~Af~lL~~i~~i------~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Iva 808 (1176)
T KOG1248|consen 742 EVILSL-KE------VNVKARRNAFALLVFIGAI------QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVA 808 (1176)
T ss_pred HHHHhc-cc------ccHHHHhhHHHHHHHHHHH------HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 444433 55 5677888888888888821 0111111 333344444432 22222222334
Q ss_pred HhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-
Q 002091 797 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI- 875 (968)
Q Consensus 797 L~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~- 875 (968)
+..+.....+ .. +.+ .-.+.++.+...|.++.++++.+|+..+..+.
T Consensus 809 i~~il~e~~~--------~l-------------------d~~-----~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 809 ITHILQEFKN--------IL-------------------DDE-----TLEKLISMVCLYLASNSREIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHHHHHHHhc--------cc-------------------cHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4444322211 00 000 11235666777888999999999999999888
Q ss_pred -cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 002091 876 -EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 919 (968)
Q Consensus 876 -~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 919 (968)
.+ ..+..-.....++.+..++...+..++.+.-.+++++.
T Consensus 857 ~~p----e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 857 KFP----EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred cCC----HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33 22222223335777777777777788888888888774
No 204
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=6.2 Score=50.36 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=142.0
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHc-CChHHHH
Q 002091 472 SAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE-GAVGPLV 550 (968)
Q Consensus 472 ~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g~v~~Lv 550 (968)
-.++..++..+..+--.|..+...-..-.-......|+.-|.+..-++|++++.||..|-..+++-+..-.- .....+.
T Consensus 1008 yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~f 1087 (1702)
T KOG0915|consen 1008 YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAF 1087 (1702)
T ss_pred cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 344566666555554445444322221112345667777777788899999999999998765443221110 2333344
Q ss_pred HHhcccCCCCcchH---HHHHHHHHHhhcCcccccCCCCccccccchhH----HHHHHH--hhccCCHHHHHHHHHHHHH
Q 002091 551 DLLLHHSSSSSSLR---EETATAIMHLAVSTMYQESSQTPVTLLESDKE----IFMLFS--LINLTGPNVQQRILQTFNA 621 (968)
Q Consensus 551 ~lL~~~~~~~~~~~---~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~----i~~l~~--ll~~~~~~~~~~al~~L~~ 621 (968)
+.+.+-. +.++ ..++.+|..|+.---.... -.....+ +|.++. ++ +.-++++.-++.++..
T Consensus 1088 RvmDDIK---EsVR~aa~~~~~~lsKl~vr~~d~~~------~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~d 1157 (1702)
T KOG0915|consen 1088 RVMDDIK---ESVREAADKAARALSKLCVRICDVTN------GAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMD 1157 (1702)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhhhcccCC------cccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHH
Confidence 4444322 2333 3455666666541100000 1112222 233322 22 5677899999999999
Q ss_pred hccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHH-HHHHHHHhccCCChhHHHHhh-ccccHHHHHHHhccCCCHHH
Q 002091 622 LCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRAN-AVKLFCCLVDDGDEAIIREHV-GQKCLETLVTIIQSSHNEEE 699 (968)
Q Consensus 622 L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~-a~~~L~~Ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~~~ 699 (968)
|+.+. +..++..+.+ .+|.|++....-.+.+... ++++ .+.-...-+..+.... .....+.+=.+++.- |
T Consensus 1158 l~Kss-g~~lkP~~~~--LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~i-D--- 1229 (1702)
T KOG0915|consen 1158 LAKSS-GKELKPHFPK--LIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYI-D--- 1229 (1702)
T ss_pred HHHhc-hhhhcchhhH--HHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhh-h---
Confidence 98763 3444444432 4666666665444433322 2222 1111000000000000 001111111111110 0
Q ss_pred HHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHH
Q 002091 700 IASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLV 779 (968)
Q Consensus 700 ~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv 779 (968)
... =...+|.+.++++++-+ -..+-.++..+..|+.....+.... -...+..++
T Consensus 1230 --------------~~v-----Leelip~l~el~R~sVg-----l~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~ 1283 (1702)
T KOG0915|consen 1230 --------------ISV-----LEELIPRLTELVRGSVG-----LGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALF 1283 (1702)
T ss_pred --------------HHH-----HHHHHHHHHHHHhccCC-----CCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHh
Confidence 000 11246888888887532 2335555555555554311111111 123456677
Q ss_pred HHhhcCChHHHHHHHHHHhhhcccC
Q 002091 780 QLLEYGTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 780 ~lL~~~~~~v~~~Aa~aL~nl~~~s 804 (968)
..+++.++.+++.-+.|.+.+...+
T Consensus 1284 ~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1284 PGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred hccccccHHHHHHHHHHHHHHHhcC
Confidence 7777788999999999999998544
No 205
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.29 E-value=0.52 Score=55.84 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=148.4
Q ss_pred CCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHH-HhhcCcccccCCCCccccccchhHHHHHHHhhccCCHH
Q 002091 532 SVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIM-HLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPN 610 (968)
Q Consensus 532 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~-~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~ 610 (968)
....-+...++.|+...|+++..... +..+.....+|. .+...+. .....++.+...+... ..
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~---e~akl~~~~aL~~~i~f~~~------------~~~~v~~~~~s~~~~d-~~ 555 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQF---EEAKLKWYHALAGKIDFPGE------------RSYEVVKPLDSALHND-EK 555 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhc---hHHHHHHHHHHhhhcCCCCC------------chhhhhhhhcchhhhh-HH
Confidence 45556777888999999999988765 566777777776 2222111 1122334443333222 22
Q ss_pred HHH--HHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhc-cccHHHH
Q 002091 611 VQQ--RILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVG-QKCLETL 687 (968)
Q Consensus 611 ~~~--~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~-~~~i~~L 687 (968)
..+ -.+.++.||++..++. +..+...-+++.+-.++...++..+..+...+.||. .++--....+.+ ....+..
T Consensus 556 ~~en~E~L~altnLas~s~s~--r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl-~~~~~~e~si~e~~~~l~~w 632 (748)
T KOG4151|consen 556 GLENFEALEALTNLASISESD--RQKILKEKALGKIEELMTEENPALQRAALESIINLL-WSPLLYERSIVEYKDRLKLW 632 (748)
T ss_pred HHHHHHHHHHhhcccCcchhh--HHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHH-hhHHHHHHHhhccccCchHH
Confidence 222 2677888887653332 333443345666777888889999999999999997 433322222333 2234444
Q ss_pred HHHhccCCCHHHHHHHHHHHhcCCC-CHHhHH-HHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHH
Q 002091 688 VTIIQSSHNEEEIASAMGILSKLPE-VPQFTQ-WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEW 765 (968)
Q Consensus 688 v~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~ 765 (968)
...+.. .+.....++++++..+.. +...+. ...-......++.++.+ .+..++...+....|+... ..+.
T Consensus 633 ~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~------~~~~~qhrgl~~~ln~~~~-~~ei 704 (748)
T KOG4151|consen 633 NLNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD------EDDEIQHRGLVIILNLFEA-LFEI 704 (748)
T ss_pred HHHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC------chhhhhhhhhhhhhhHHHH-HHHH
Confidence 444433 455566677777777777 555555 44446678888888888 6677888888888885554 5666
Q ss_pred HHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhh
Q 002091 766 QKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARF 800 (968)
Q Consensus 766 ~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 800 (968)
...+.....++.+..+-.-.-...++.++.+|...
T Consensus 705 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 705 AEKIFETEVMELLSGLQKLNRAPKREDAAPCLSAA 739 (748)
T ss_pred HHHhccchHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 66666666677666554433345556666655544
No 206
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=19 Score=44.26 Aligned_cols=419 Identities=15% Similarity=0.164 Sum_probs=219.7
Q ss_pred hhccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcC--CCHHHHHHHHHHHHhcc-----CC---------
Q 002091 388 SLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS--DDNQASRDAQELLENLS-----FS--------- 451 (968)
Q Consensus 388 ~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s--~~~~~~~~a~~~L~~Ls-----~~--------- 451 (968)
.+.++++.+.+|=..|..+.|. +|.++.|+....+ .+..+|..|+--++|.- .+
T Consensus 13 T~d~d~~~R~~AE~~L~q~~K~----------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I 82 (1010)
T KOG1991|consen 13 TIDSDAKERKAAEQQLNQLEKQ----------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGI 82 (1010)
T ss_pred hcCCChHHHHHHHHHHHHhhcC----------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCC
Confidence 3445667787787777777654 5777777777754 35577888998999983 11
Q ss_pred -chhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHh
Q 002091 452 -DDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNL 530 (968)
Q Consensus 452 -~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 530 (968)
++.|..+ + +.++..+-.+++-+|..-..+|..+-..|.-.. -.|.++..-.+|++++....-.|+-+|+.|
T Consensus 83 ~e~dk~~i-r----enIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~---Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 83 PEEDKAVI-R----ENILETIVQVPELIRVQLTACLNTIIKADYPEQ---WPGLLDKIKNLLQSQDANHVYGALLCLYQL 154 (1010)
T ss_pred ChHHHHHH-H----HHHHHHHHhCchHHHHHHHHHHHHHHhcCCccc---chhHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 1122222 2 234444445566666666666655533332100 157788888899999999999999999999
Q ss_pred cCCC-----ccHHHHHH--cCChHHHH----HHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchh----
Q 002091 531 SSVP-----QNGLQMIK--EGAVGPLV----DLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDK---- 595 (968)
Q Consensus 531 s~~~-----~~~~~i~~--~g~v~~Lv----~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~---- 595 (968)
+... +-|.-+.. ....|.+. .++...+....++....+.+...++...-.+. +...+
T Consensus 155 ~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~--------L~~~~~f~~ 226 (1010)
T KOG1991|consen 155 FKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLE--------LSAPETFTS 226 (1010)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHH--------hhCchhHHH
Confidence 9422 22322221 12344444 34444432333444445544444444332222 11112
Q ss_pred HHHHHHHhhccC--------CHH---------HHHHHHHHHHHhcc-CCC-------hhhHHHHHhh---cCchHHHHHh
Q 002091 596 EIFMLFSLINLT--------GPN---------VQQRILQTFNALCR-SPS-------AGNIKTTLTQ---CSAIPVLVQL 647 (968)
Q Consensus 596 ~i~~l~~ll~~~--------~~~---------~~~~al~~L~~L~~-~~~-------~~~~~~~i~~---~g~i~~Lv~l 647 (968)
.+..++.+++.. +|+ .++-++..|..++. .++ ..+....+.. .++...+++.
T Consensus 227 W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~ 306 (1010)
T KOG1991|consen 227 WMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKI 306 (1010)
T ss_pred HHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444422 222 45567777877763 221 2222222221 3445555555
Q ss_pred hc---c---CChhHHHHHHHHHHHhccCCChhHHHHhhccc---cHH-HHHHHhccC-CCH--------HH---------
Q 002091 648 CE---H---DNENVRANAVKLFCCLVDDGDEAIIREHVGQK---CLE-TLVTIIQSS-HNE--------EE--------- 699 (968)
Q Consensus 648 l~---~---~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~---~i~-~Lv~lL~~~-~~~--------~~--------- 699 (968)
+. . -++++...+..-+.+.+. .......+++. .+. .+..++.-. ++. +-
T Consensus 307 l~~~~~~~yls~rvl~~~l~fl~~~Vs---~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~e 383 (1010)
T KOG1991|consen 307 LEQWRQQLYLSDRVLYYLLNFLEQCVS---HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFE 383 (1010)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhcc---HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhc
Confidence 53 1 256677777666666551 11111222211 111 111122111 111 11
Q ss_pred -----HHHHHHHHhcCCC-C-HHhHHHHHHcCCHHHHHHHhhcCCC--CCCchhHHHHHHHHHHhhccCCC--CHHHHHH
Q 002091 700 -----IASAMGILSKLPE-V-PQFTQWLLDAGALPIVLNFLKNGRQ--NDPNRFQVVENAVGALRRFTAPT--NLEWQKR 768 (968)
Q Consensus 700 -----~~~Al~~L~nL~~-~-~~~~~~l~~~g~l~~Lv~lL~~~~~--~~~~~~~v~e~a~~aL~~L~~~~--~~~~~~~ 768 (968)
..+|+..+..++. . ++. =.|.++.+++.+.+-.. ....+..-++.|..++++++.-- ...+ +.
T Consensus 384 d~~sp~~Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-~~ 457 (1010)
T KOG1991|consen 384 DGYSPDTAALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPY-KS 457 (1010)
T ss_pred ccCCCcHHHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCch-HH
Confidence 1233444433333 1 111 12456777777774211 12234556788888888888431 1111 12
Q ss_pred HHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCC
Q 002091 769 AAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANA 848 (968)
Q Consensus 769 ~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~ 848 (968)
..+.=+++.+.-.+++..-.+|..|||.++.++.-. +..+ -.-..+
T Consensus 458 ~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~--------------------------------~~l~~a 503 (1010)
T KOG1991|consen 458 QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSID--FKDP--------------------------------NNLSEA 503 (1010)
T ss_pred HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhcc--CCCh--------------------------------HHHHHH
Confidence 223334555666667777789999999999998211 1111 011235
Q ss_pred hHHHHhhcc-CCChhhhHHHHHHHHhhh
Q 002091 849 VRPLVRVLE-DPDHGACEASLDALVTLI 875 (968)
Q Consensus 849 i~~Lv~lL~-~~~~~v~~~al~aL~~L~ 875 (968)
++.-.++|. +++-.|+..|+-||..+.
T Consensus 504 le~t~~~l~~d~~lPV~VeAalALq~fI 531 (1010)
T KOG1991|consen 504 LELTHNCLLNDNELPVRVEAALALQSFI 531 (1010)
T ss_pred HHHHHHHhccCCcCchhhHHHHHHHHHH
Confidence 666677777 677789999999999998
No 207
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.15 E-value=1.3 Score=48.74 Aligned_cols=225 Identities=11% Similarity=0.153 Sum_probs=153.6
Q ss_pred cCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhH---HHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCH
Q 002091 638 CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI---IREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVP 714 (968)
Q Consensus 638 ~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~ 714 (968)
.+.+..|+..+..-+-+.+..++.+..++.....+.. ....+....-..|..++...+++++...+-.+|..+...+
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 4788889999988899999999999999873322221 1222222223344444444455567777888888888899
Q ss_pred HhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcC---ChHHHHHHhhcCChHHHH
Q 002091 715 QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG---VIPKLVQLLEYGTTLTKE 791 (968)
Q Consensus 715 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g---~i~~Lv~lL~~~~~~v~~ 791 (968)
...+.++....+..+.+.+.. +.-++...|..++..+-.. .+.....+...+ .+.....+|.+++.-+|+
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~------~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQL------PNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTS------SSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcC------CccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 999999999999889998888 6678888888888886554 577666666554 566788899999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHH
Q 002091 792 HAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDAL 871 (968)
Q Consensus 792 ~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL 871 (968)
.+...|+.+-.+..+ ..--...+-+..-+..++.+|.++...++..|-..+
T Consensus 228 qslkLL~ellldr~n-----------------------------~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 228 QSLKLLGELLLDRSN-----------------------------FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp HHHHHHHHHHHSGGG-----------------------------HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHchhH-----------------------------HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 999999999853321 000012223445688889999999999999999999
Q ss_pred Hhhh-cccccchhhHHHHhcCcHHHHHHHh
Q 002091 872 VTLI-EGERLQNGSKVLEDANAIDRMVRFL 900 (968)
Q Consensus 872 ~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll 900 (968)
.-+. .+.+..+....+... -+.|++.+
T Consensus 279 KvFVANp~K~~~I~~iL~~N--r~kLl~fl 306 (335)
T PF08569_consen 279 KVFVANPNKPPPIVDILIKN--REKLLRFL 306 (335)
T ss_dssp HHHHH-SS-BHHHHHHHHHT--HHHHHHHH
T ss_pred HHHHhCCCCChHHHHHHHHH--HHHHHHHH
Confidence 9888 877666665555544 23444444
No 208
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.038 Score=55.17 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=45.6
Q ss_pred CcccccccccCCCCce----ecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCcc
Q 002091 264 QSFYCPITRDVMVDPV----ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv----~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~p 317 (968)
..|+||+|++.+.+.+ .-+|||.++..|.++.+. +...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 6799999999998753 458999999999999884 5679999999998887776
No 209
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.034 Score=58.80 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=39.3
Q ss_pred CcccccccccCCCCc-------------eecCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 264 QSFYCPITRDVMVDP-------------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 264 ~~~~cpi~~~~m~dp-------------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
.|=.|-||++=|..| =-+||||-+--.|++.|+++ ..+||+|+.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 567899999987644 57999999999999999976 56999999984
No 210
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.02 E-value=1.5 Score=47.99 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=111.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhccCCChh-hHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccC-CChhHHH
Q 002091 599 MLFSLINLTGPNVQQRILQTFNALCRSPSAG-NIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDD-GDEAIIR 676 (968)
Q Consensus 599 ~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~-~~~~~~~ 676 (968)
..+..+.......|+.++..+.++....--. .+.... .-.+..+.+.++.+..+-+..|+.++.-++-. +......
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~--~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRR--ETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3444555667889999999888887542222 221111 12467777788887766667777777766522 2222223
Q ss_pred HhhccccHHHHHHHhccCC-CHHHHHHHHHHHhcC---CC-CHHhHHHHHHcCCHHHH--HHHhhcCCC----CCCchhH
Q 002091 677 EHVGQKCLETLVTIIQSSH-NEEEIASAMGILSKL---PE-VPQFTQWLLDAGALPIV--LNFLKNGRQ----NDPNRFQ 745 (968)
Q Consensus 677 ~~~~~~~i~~Lv~lL~~~~-~~~~~~~Al~~L~nL---~~-~~~~~~~l~~~g~l~~L--v~lL~~~~~----~~~~~~~ 745 (968)
.++ ....+.|...+...+ ....+..++.+|+-+ +. +.+.....+ ..+..+ ...++.+.. ...++..
T Consensus 125 ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 333 246778888887654 344555555455444 33 333322111 122211 112222111 1113356
Q ss_pred HHHHHHHHHhhccCCCCH-HHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 746 VVENAVGALRRFTAPTNL-EWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 746 v~e~a~~aL~~L~~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
+...|+.+.+-|....+. .....+ ...+|.|..+|.+.+..+|..|..+|+-+-.
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 777777666666554233 233222 3458999999999999999999999998864
No 211
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.98 E-value=1.5 Score=43.73 Aligned_cols=92 Identities=18% Similarity=0.275 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchh
Q 002091 516 DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDK 595 (968)
Q Consensus 516 ~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~ 595 (968)
+|.+|.+++.+++.|+...++ ++ ...++.+...|.+++ +.++..|+.+|..|...+. +.-.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~---~~VR~~al~~Ls~Li~~d~-----------ik~k~ 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDED---PLVRKTALLVLSHLILEDM-----------IKVKG 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCc-----------eeehh
Confidence 578899999999999863332 12 235678888898776 8999999999999987542 22233
Q ss_pred HH-HHHHHhhccCCHHHHHHHHHHHHHhccC
Q 002091 596 EI-FMLFSLINLTGPNVQQRILQTFNALCRS 625 (968)
Q Consensus 596 ~i-~~l~~ll~~~~~~~~~~al~~L~~L~~~ 625 (968)
-+ ..++.++.+.+++++..|..++..+...
T Consensus 63 ~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 63 QLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 33 7778888999999999999999998754
No 212
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.034 Score=58.13 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=41.6
Q ss_pred CCCcccccccccCCCCceecCC-chhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 262 PLQSFYCPITRDVMVDPVETSS-GQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~-g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
+|+.=.||+|+.=-.+|-++.+ |..||-.||-.+.. .+..||+|+-|.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcc
Confidence 5688899999998888877765 99999999999997 578999998765
No 213
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.67 E-value=0.49 Score=52.41 Aligned_cols=273 Identities=13% Similarity=0.080 Sum_probs=141.9
Q ss_pred hhcCCHHHHHHHHHHHHHhcC------CCccHHHHHHcCChHHH------HHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091 512 VSRGDIQMKKVAVKALRNLSS------VPQNGLQMIKEGAVGPL------VDLLLHHSSSSSSLREETATAIMHLAVSTM 579 (968)
Q Consensus 512 L~~~~~~~~~~a~~aL~~Ls~------~~~~~~~i~~~g~v~~L------v~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 579 (968)
+....|.++..++.+|..+-. .|+..+.-...|.+-.+ -....+.. .+..+..+..++.+|...+.
T Consensus 304 ~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~--~~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 304 MGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSE--HPTLQASACDALSSILPEAF 381 (728)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhc--CCCchhHHHHHHhhcCchhh
Confidence 344578889999988888752 22222222233322221 11122211 24566677777777765322
Q ss_pred cccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHH
Q 002091 580 YQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 659 (968)
Q Consensus 580 ~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a 659 (968)
.+- +++.. ...+..+...-++.+.-++..+++++.-+.-++.....+..+. .+...+...+.+..-..++++
T Consensus 382 ~~l--pn~~~----T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~--~aa~~il~sl~d~~ln~r~Ka 453 (728)
T KOG4535|consen 382 SNL--PNDRQ----TLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVA--DAANAILMSLEDKSLNVRAKA 453 (728)
T ss_pred cCC--CCcch----hhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHH--HHHHHHHHHhhhHhHhHHHHH
Confidence 111 01000 0011111111122233355556776666555555444443333 245666667777778899999
Q ss_pred HHHHHHhcc---CCCh--hHHHHhhccccHHHHHHHhcc--CCCHHHHHHHHHHHhcCCC-CH---HhHHHHHHcCCHHH
Q 002091 660 VKLFCCLVD---DGDE--AIIREHVGQKCLETLVTIIQS--SHNEEEIASAMGILSKLPE-VP---QFTQWLLDAGALPI 728 (968)
Q Consensus 660 ~~~L~~Ls~---~~~~--~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~~Al~~L~nL~~-~~---~~~~~l~~~g~l~~ 728 (968)
+|++.|++. .+.+ +...+-...-.+..++..-.. ..++.++..|.+.|+|+.. -+ +.....+..|.+.
T Consensus 454 awtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~- 532 (728)
T KOG4535|consen 454 AWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQ- 532 (728)
T ss_pred HHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHH-
Confidence 999999972 1111 111111111123333333222 2466789999999999876 11 1111111122222
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHH--HHHHHHcCChHHHHHHhhcC-ChHHHHHHHHHHhhhc
Q 002091 729 VLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEW--QKRAAEAGVIPKLVQLLEYG-TTLTKEHAATSLARFS 801 (968)
Q Consensus 729 Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~--~~~~~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~nl~ 801 (968)
.++... .-+....++=++|.+++||-.+ +.. +..=-...+++.|..++.+. +..+|..|+.+|..-.
T Consensus 533 --~l~~~v--~~~~~~kV~WNaCya~gNLfkn--~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 533 --ALISTV--LTEAAMKVRWNACYAMGNLFKN--PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred --hcccce--ecccccccchHHHHHHHHhhcC--ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 222210 0113467899999999999984 332 11111234578888888764 7899999999987655
No 214
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.52 E-value=1.3 Score=53.28 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
+++.+|-.|+..++.+-. ++... .+++.+.+++.++++.||+.|+.++.++-
T Consensus 104 ~N~~iR~~AlR~ls~l~~---~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 104 PNEEIRGFALRTLSLLRV---KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred CCHHHHHHHHHHHHhcCh---HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 445555555555554432 22222 23455556666566666666666665554
No 215
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=5.1 Score=47.21 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=102.0
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHH-HhccCCChhhHHHHHhhcCchHHHHHh-hccCChhHHHHHHHHHHHhccCCC
Q 002091 594 DKEIFMLFSLINLTGPNVQQRILQTFN-ALCRSPSAGNIKTTLTQCSAIPVLVQL-CEHDNENVRANAVKLFCCLVDDGD 671 (968)
Q Consensus 594 ~~~i~~l~~ll~~~~~~~~~~al~~L~-~L~~~~~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~v~~~a~~~L~~Ls~~~~ 671 (968)
+++=+.+-+++.+.+|.++..-+.++. .-+..+.+ ++|..|+.. ..+.+++|++.|+.+|.... ..+
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----------kair~lLh~aVsD~nDDVrRaAVialGFVl-~~d 586 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----------KAIRRLLHVAVSDVNDDVRRAAVIALGFVL-FRD 586 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----------hhHHHhhcccccccchHHHHHHHHHheeeE-ecC
Confidence 345556677888889988887444332 23322222 456666666 56678999999999999887 333
Q ss_pred hhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHH
Q 002091 672 EAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 751 (968)
Q Consensus 672 ~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~ 751 (968)
+ ...+..|.+|..+.+..++..++.+|+--+.......++ ..|-.+..+ +..-+|..|+
T Consensus 587 p---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D------~~~fVRQgAl 645 (929)
T KOG2062|consen 587 P---------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSD------PVDFVRQGAL 645 (929)
T ss_pred h---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcC------hHHHHHHHHH
Confidence 3 357778889988889999999999998777633333322 223333344 5677899998
Q ss_pred HHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCCh
Q 002091 752 GALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTT 787 (968)
Q Consensus 752 ~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 787 (968)
.++.-+....++.....+ .++...+.+.+.+.+.
T Consensus 646 Ia~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 646 IALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred HHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhh
Confidence 888776654233322111 2344556666665543
No 216
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.19 E-value=0.23 Score=49.67 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhH
Q 002091 786 TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACE 865 (968)
Q Consensus 786 ~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 865 (968)
++.+|..+..+++.|+..-+++.. ..++.+...|.++++.||.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-------------------------------------~~~~~l~~~L~D~~~~VR~ 43 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-------------------------------------PYLPNLYKCLRDEDPLVRK 43 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-------------------------------------hHHHHHHHHHCCCCHHHHH
Confidence 578899999999999854433222 2578888999999999999
Q ss_pred HHHHHHHhhh-cc-cccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Q 002091 866 ASLDALVTLI-EG-ERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL 921 (968)
Q Consensus 866 ~al~aL~~L~-~~-~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 921 (968)
.|+..|..|. .+ .+ .+...+..+..++.++++.|+..|...+..+...
T Consensus 44 ~al~~Ls~Li~~d~ik--------~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 44 TALLVLSHLILEDMIK--------VKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHcCcee--------ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999998 32 11 1222346777888999999999999999988765
No 217
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.84 E-value=24 Score=44.36 Aligned_cols=231 Identities=14% Similarity=0.151 Sum_probs=131.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHH
Q 002091 687 LVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ 766 (968)
Q Consensus 687 Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~ 766 (968)
+.....+.++..+|..+.++|..++..+....... .-+..+-+.|.++.. ......+...+.+|..|-...+.+..
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~--q~i~~I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e~~ 733 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVE--QRIDDIFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAEHC 733 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHH--HHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHHHH
Confidence 34444555577899999999999887422221111 112223333332111 14566777888888877776343333
Q ss_pred HHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcc--cCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHh
Q 002091 767 KRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK--NSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLL 844 (968)
Q Consensus 767 ~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~--~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~ 844 (968)
..+ ...||.++-.++.-+...++.|-.+|..+.. .+.. .| +..
T Consensus 734 ~~i--~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d--------~g-------------------~e~------ 778 (1176)
T KOG1248|consen 734 DLI--PKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLD--------DG-------------------NEP------ 778 (1176)
T ss_pred HHH--HHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhc--------cc-------------------ccc------
Confidence 332 2235555555566688889888888888872 1110 00 000
Q ss_pred hcCChHHHHhhccCC--Chh--hhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 002091 845 EANAVRPLVRVLEDP--DHG--ACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 919 (968)
Q Consensus 845 ~~g~i~~Lv~lL~~~--~~~--v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 919 (968)
....|+.++..+..+ +.. ++...+.|+..+. +-. +......=.+.++-+.-.+.+.++.+...|+..+..+.
T Consensus 779 ~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~---~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 779 ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK---NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLV 855 (1176)
T ss_pred hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 011566666666543 222 3333356677766 211 12112222344566666778899999999999998885
Q ss_pred c-Chh-hHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHh
Q 002091 920 R-LPE-FKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 920 ~-~~~-~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~ 959 (968)
. .++ +...+-..-.+.+..+.++.+..+|.++...|..|.
T Consensus 856 ~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 856 YKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3 333 222222223455777888888888888888887764
No 218
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.64 E-value=13 Score=45.94 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=109.1
Q ss_pred HHhCCchHHHHHHHhcC-----CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhh----cCC----HHHHHHHH
Q 002091 458 MAKANYFKHLLQRLSAG-----PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS----RGD----IQMKKVAV 524 (968)
Q Consensus 458 i~~~g~v~~Lv~~L~~~-----~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a~ 524 (968)
+.+.|++..++..|.+- ..+.-......|...+....+|..+.+.|+++.|++.|. .+. +.+-+.-+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 45689999999888652 344555666777777888999999999999999998875 333 55666666
Q ss_pred HHHHHhcCCCc--cH---HHHHHcC--------ChHHHHHHhcccCC-CCcchHHHHHHHHHHhhcCcccccCCCCcccc
Q 002091 525 KALRNLSSVPQ--NG---LQMIKEG--------AVGPLVDLLLHHSS-SSSSLREETATAIMHLAVSTMYQESSQTPVTL 590 (968)
Q Consensus 525 ~aL~~Ls~~~~--~~---~~i~~~g--------~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~i 590 (968)
.++..|..... .. ....... -+..|++.+.+... ..+.+....+.+|..|+.+...
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e---------- 262 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEE---------- 262 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHH----------
Confidence 66655542111 01 0111111 26666666664321 2266778888888888865432
Q ss_pred ccchhHHHHHHHhhc----------cCCHHHHHHHHHHHHHhcc----CCChhhHHHHHhhcCchHHHHHhhccCChh
Q 002091 591 LESDKEIFMLFSLIN----------LTGPNVQQRILQTFNALCR----SPSAGNIKTTLTQCSAIPVLVQLCEHDNEN 654 (968)
Q Consensus 591 l~~~~~i~~l~~ll~----------~~~~~~~~~al~~L~~L~~----~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 654 (968)
.+..|+..+. ...++- ...+.+++.++. +..+...++.+.+.|++...+.++...-+.
T Consensus 263 -----~m~~Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 263 -----KMDALVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred -----HHHHHHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 2333333222 111111 123555555543 334567888888888888888877655443
No 219
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.42 E-value=4.4 Score=46.08 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=117.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCC-CCcchHHHHHHHHHHhhcCcccccCC
Q 002091 506 GPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSS-SSSSLREETATAIMHLAVSTMYQESS 584 (968)
Q Consensus 506 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~~~~~~ 584 (968)
..+.+++.+++...+..|.+-|..++.++.....++...++..|..++.++.. -..++...++.++..+...+...
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs--- 162 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS--- 162 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee---
Confidence 56778889999999999999999999999999999999999999999988653 12455666666666665543211
Q ss_pred CCccccccchhHHHHHHHhhc--cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHH
Q 002091 585 QTPVTLLESDKEIFMLFSLIN--LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKL 662 (968)
Q Consensus 585 ~~~~~il~~~~~i~~l~~ll~--~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~ 662 (968)
.......+|.....+++ ..+..+...++..|-++.-+ ....+..+.+.--+..|+..+...+..++..|...
T Consensus 163 ----W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~--s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial 236 (713)
T KOG2999|consen 163 ----WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG--SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIAL 236 (713)
T ss_pred ----eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC--ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHH
Confidence 11223455555555554 23445666788878777654 23345677776678999999999999999998888
Q ss_pred HHHhccCCChhHHHHhhc
Q 002091 663 FCCLVDDGDEAIIREHVG 680 (968)
Q Consensus 663 L~~Ls~~~~~~~~~~~~~ 680 (968)
+..|....+++.+..+.+
T Consensus 237 ~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 237 LNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHhhCChHHHHHHHH
Confidence 888775555555555443
No 220
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.33 E-value=8.9 Score=43.24 Aligned_cols=124 Identities=10% Similarity=0.154 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcc-CC-ChhhHHHHHhhcCchHHHHHhhccC---ChhHHHHHHHHHHHhccCCChhHHHHhhccccHH
Q 002091 611 VQQRILQTFNALCR-SP-SAGNIKTTLTQCSAIPVLVQLCEHD---NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLE 685 (968)
Q Consensus 611 ~~~~al~~L~~L~~-~~-~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~ 685 (968)
+.+..++.+..+.. .+ ....+|..+........|..++++. ...+-..|+.++..+. ...+.....+.+.|.++
T Consensus 76 llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I-~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 76 LLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFI-HNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHH-hcCCchhHHHHHcCChH
Confidence 44556666666666 33 3344555444244566777777766 4788899999999998 66667777888899999
Q ss_pred HHHHHhc-cC--CCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhc
Q 002091 686 TLVTIIQ-SS--HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKN 735 (968)
Q Consensus 686 ~Lv~lL~-~~--~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~ 735 (968)
.+++.+. .. .+.++....-.+|+.|+-+....+.+.+.+.++.+.+++.+
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 9999888 32 45666666667888888899999999999999999999988
No 221
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.33 E-value=5.4 Score=43.97 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=139.4
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-Chh-----HHHHhhhc-cChHHHHHHhhcCCCHHHHHHHHHHHHhccC
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELST-CNT-----LRDQIGDV-QGCILLLVTMASSDDNQASRDAQELLENLSF 450 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~-----~~~~i~~~-~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~ 450 (968)
.+.+..++..|.. +.+.++.++.....+-+ ... ....+... +..+..|+.-- +++++...+...|+....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 5667777777754 45677777777776655 222 23445443 34455555443 456666788888999888
Q ss_pred CchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHh-ccCchhhHHHhh---cCchHHHHHhhhcCCHHHHHHHHHH
Q 002091 451 SDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEM-ELTDHHKASLLE---GNVLGPLLHLVSRGDIQMKKVAVKA 526 (968)
Q Consensus 451 ~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L-~~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~a 526 (968)
++.--..+.....+..+.+....++-++-..|..++..+ ..+...-..... ...+...-.+|.+++.-.+..+++.
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 888777888888999999999999999999999999887 444433333333 3467788889999999999999999
Q ss_pred HHHhcCCCccHHHHHH----cCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc
Q 002091 527 LRNLSSVPQNGLQMIK----EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST 578 (968)
Q Consensus 527 L~~Ls~~~~~~~~i~~----~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 578 (968)
|+.|-.++.|...|.. ..-+..++.+|++.+ ..++.+|..+.--....+
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s---k~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS---KNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc---hhhhHHHHHHHHHHHhCC
Confidence 9999998888776654 245777888998876 789999998887776654
No 222
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.19 E-value=0.81 Score=46.03 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhccCCchhHHHHHh----------------CCchHHHHHHHhcC------CHHHHHHHHHHHHHhccCch
Q 002091 437 ASRDAQELLENLSFSDDNVVQMAK----------------ANYFKHLLQRLSAG------PESVKMRMATTLAEMELTDH 494 (968)
Q Consensus 437 ~~~~a~~~L~~Ls~~~~n~~~i~~----------------~g~v~~Lv~~L~~~------~~~~~~~aa~~L~~L~~~~~ 494 (968)
....++.+|.|++..+.....+.. ..++..|+..+..| ...--...+.+|.|++..++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 345567777777766655443322 23567777776652 23455678899999999999
Q ss_pred hhHHHhh--cCc--hHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHc---CChHHHHHHhc
Q 002091 495 HKASLLE--GNV--LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE---GAVGPLVDLLL 554 (968)
Q Consensus 495 ~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~---g~v~~Lv~lL~ 554 (968)
.|.-+.+ .+. +..|+..+.+.+..-|.-++.+|+|+|-..+....+... +++|.|+--|.
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9998886 344 778888888888888999999999999877777777653 34555444443
No 223
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.89 E-value=0.14 Score=38.96 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=25.5
Q ss_pred cccccccccCCCCceec-CCchh--hhH-HHHHHHHhcCCCCCCCCCCc
Q 002091 265 SFYCPITRDVMVDPVET-SSGQT--FER-SAIEKWFSDGNNLCPLTMTV 309 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~-~~g~t--~~r-~~i~~~~~~~~~~CP~t~~~ 309 (968)
.+.||||...|+-||-. .|-|. ||- ..|+.....+.-.||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999984 56554 885 55554555566789999864
No 224
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.78 E-value=16 Score=44.03 Aligned_cols=125 Identities=16% Similarity=0.263 Sum_probs=81.8
Q ss_pred HHhhccccHHHHHHHhccCCC-------HHHHHHHHHHHhcCCCCHHhHHHHHHc--------CCHHHHHHHhhcCCCCC
Q 002091 676 REHVGQKCLETLVTIIQSSHN-------EEEIASAMGILSKLPEVPQFTQWLLDA--------GALPIVLNFLKNGRQND 740 (968)
Q Consensus 676 ~~~~~~~~i~~Lv~lL~~~~~-------~~~~~~Al~~L~nL~~~~~~~~~l~~~--------g~l~~Lv~lL~~~~~~~ 740 (968)
..++..+++..++++.....+ .+....|+.+|.-+..-+++...+..+ .++..++..-... ..
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~--~~ 672 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGS--NS 672 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccc--cc
Confidence 345566788888888765432 355677888877776656665555432 1333333332221 11
Q ss_pred CchhHHHHHHHHHHhhccCCCCHHH-----------------------------------HHHHHHcCChHHHHHHhhcC
Q 002091 741 PNRFQVVENAVGALRRFTAPTNLEW-----------------------------------QKRAAEAGVIPKLVQLLEYG 785 (968)
Q Consensus 741 ~~~~~v~e~a~~aL~~L~~~~~~~~-----------------------------------~~~~~~~g~i~~Lv~lL~~~ 785 (968)
-.+++++..|+.+|.|+... .|+. +..+...++|..|+++|+..
T Consensus 673 i~Dpei~~~AL~vIincVc~-pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k 751 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCP-PPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYK 751 (1516)
T ss_pred ccCHHHHHHHHhhhheeecC-CCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Confidence 24788999999999998875 2221 24556678999999999965
Q ss_pred Ch-----HHHHHHHHHHhhhccc
Q 002091 786 TT-----LTKEHAATSLARFSKN 803 (968)
Q Consensus 786 ~~-----~v~~~Aa~aL~nl~~~ 803 (968)
.| .+|..|+.+|--|+.+
T Consensus 752 ~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 752 NPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CCCCcHHHHHHHHHHHHhccccC
Confidence 43 6889999999888853
No 225
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.12 Score=55.91 Aligned_cols=42 Identities=21% Similarity=0.578 Sum_probs=37.9
Q ss_pred cccccccccCCC---CceecCCchhhhHHHHHHHHhcCC--CCCCCC
Q 002091 265 SFYCPITRDVMV---DPVETSSGQTFERSAIEKWFSDGN--NLCPLT 306 (968)
Q Consensus 265 ~~~cpi~~~~m~---dpv~~~~g~t~~r~~i~~~~~~~~--~~CP~t 306 (968)
-|.|||.++--. -|+.+.|||..++.+|.+-.++|. +.||.|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 489999999887 499999999999999999988887 789998
No 226
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=11 Score=44.71 Aligned_cols=134 Identities=20% Similarity=0.173 Sum_probs=92.1
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhH
Q 002091 639 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFT 717 (968)
Q Consensus 639 g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~ 717 (968)
++=+.+-+++.+.++-+|......+.. +..++. ..+++..|+.+--++.+++++.+|+.+|+-++. +++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLAL-AYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHH-HHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-
Confidence 455556677777788888776654432 223332 236788888876666788999999999999888 6654
Q ss_pred HHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHH
Q 002091 718 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSL 797 (968)
Q Consensus 718 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL 797 (968)
++..+.+|... ++.-+|..++.+|+-.|++.. .+. ++..|-.+..+...-||+.|+.++
T Consensus 590 --------~~s~V~lLses-----~N~HVRyGaA~ALGIaCAGtG--~~e------Ai~lLepl~~D~~~fVRQgAlIa~ 648 (929)
T KOG2062|consen 590 --------LPSTVSLLSES-----YNPHVRYGAAMALGIACAGTG--LKE------AINLLEPLTSDPVDFVRQGALIAL 648 (929)
T ss_pred --------chHHHHHHhhh-----cChhhhhhHHHHHhhhhcCCC--cHH------HHHHHhhhhcChHHHHHHHHHHHH
Confidence 45666777653 677899999999999998621 111 234444455555668999998888
Q ss_pred hhhcc
Q 002091 798 ARFSK 802 (968)
Q Consensus 798 ~nl~~ 802 (968)
+-+..
T Consensus 649 amIm~ 653 (929)
T KOG2062|consen 649 AMIMI 653 (929)
T ss_pred HHHHH
Confidence 77753
No 227
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.88 E-value=0.34 Score=32.64 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.1
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 775 IPKLVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 775 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
+|.+++++++.++++|..|+++|++++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999873
No 228
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=90.78 E-value=23 Score=43.68 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=112.0
Q ss_pred cchhHHHHHHHhhcc-----CCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhc----cCC----hhHHHH
Q 002091 592 ESDKEIFMLFSLINL-----TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE----HDN----ENVRAN 658 (968)
Q Consensus 592 ~~~~~i~~l~~ll~~-----~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~----~~~----~~v~~~ 658 (968)
...|++..++.++.. .+......++..|...|. -+..|+.+.+.++++.|+..+. .+. ..+.+.
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K---v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK---VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh---hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 334566666666652 234455566666666664 4666778888999999998774 333 567777
Q ss_pred HHHHHHHhccCCChhHHHHh---h--------ccccHHHHHHHhccC---CCHHHHHHHHHHHhcCCC-CHHhHHHHHHc
Q 002091 659 AVKLFCCLVDDGDEAIIREH---V--------GQKCLETLVTIIQSS---HNEEEIASAMGILSKLPE-VPQFTQWLLDA 723 (968)
Q Consensus 659 a~~~L~~Ls~~~~~~~~~~~---~--------~~~~i~~Lv~lL~~~---~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~ 723 (968)
...++..+............ . ....+..|++.+.+. ++..+....+++|.+|+. +++..+.+++.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 77777666522221111110 0 112366677777655 467888999999999999 77777766532
Q ss_pred CCHHHHHHHhhcCCCCCCchhH-HHHHHHHHHhhccCC-CCHHHHHHHHHcCChHHHHHHhhcCChHH
Q 002091 724 GALPIVLNFLKNGRQNDPNRFQ-VVENAVGALRRFTAP-TNLEWQKRAAEAGVIPKLVQLLEYGTTLT 789 (968)
Q Consensus 724 g~l~~Lv~lL~~~~~~~~~~~~-v~e~a~~aL~~L~~~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 789 (968)
+.+.+++=+-.. ....+.. ..+.-+.+..++-.. .....++.+.+.|++...+..|...-|..
T Consensus 271 --F~p~l~f~~~D~-~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 271 --FKPYLDFDKFDE-EHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred --HHHhcChhhccc-ccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence 122222111111 1112222 222233333333221 13568889999999999999888765544
No 229
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=0.17 Score=51.04 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=40.6
Q ss_pred CcccccccccCCCCce----ecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 002091 264 QSFYCPITRDVMVDPV----ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSIL 315 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv----~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l 315 (968)
..|+|||++-.|.+-. +-+|||.|.-.++.+. +..+||+|+...+....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCe
Confidence 4799999999999754 4689999999998876 36799999999966554
No 230
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.65 E-value=13 Score=43.97 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=72.4
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH
Q 002091 596 EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII 675 (968)
Q Consensus 596 ~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 675 (968)
.+..++....+.+-.++..++..|..+... +.++-..+- .+....|..-+.+..+.||..|+.+|..+-.+..++
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 344445555567778999999988888753 122111111 234556666667778999999999999996332222
Q ss_pred HHhhccccHHHHHHHhccCCCHHHHHHHHHHHhc
Q 002091 676 REHVGQKCLETLVTIIQSSHNEEEIASAMGILSK 709 (968)
Q Consensus 676 ~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~n 709 (968)
+-.+...++.+++.+.+++++.+|+..+.+
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 236788899999999999999998876655
No 231
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=0.11 Score=52.67 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=46.3
Q ss_pred CCCcccccccccCCCCce----------ecCCchhhhHHHHHHHHhcC-CCCCCCCCCcCCCCCCccC
Q 002091 262 PLQSFYCPITRDVMVDPV----------ETSSGQTFERSAIEKWFSDG-NNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv----------~~~~g~t~~r~~i~~~~~~~-~~~CP~t~~~l~~~~l~pn 318 (968)
-.++=.|.+|++=+-+-| .++|+|.|--.||.-|.--| ..|||-|+++.+...+..|
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 446778999998777666 68899999999999997544 5799999998877666665
No 232
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.39 E-value=9.7 Score=45.75 Aligned_cols=360 Identities=11% Similarity=0.068 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchh--HHHH----HhCCchHHHH
Q 002091 395 ERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDN--VVQM----AKANYFKHLL 468 (968)
Q Consensus 395 ~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n--~~~i----~~~g~v~~Lv 468 (968)
..-.+++.|..|+-+..+...+.. .|+|..|+..-.-. ..-.....+|..++....- |..+ +-..++..-+
T Consensus 369 l~~~~~k~~~~l~~h~kfa~~fv~-~~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~ 445 (1516)
T KOG1832|consen 369 LLPDVMKLICALAAHRKFAAMFVE-RRGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAI 445 (1516)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHH-hhhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHH
Confidence 345677778888777777776666 68888877654311 1111222334443322211 1111 1122334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC--------C-----------HHHHHHHHHHHHH
Q 002091 469 QRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--------D-----------IQMKKVAVKALRN 529 (968)
Q Consensus 469 ~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--------~-----------~~~~~~a~~aL~~ 529 (968)
.+|.-.....+.+++-.+.........-..+-..+.+..|+.+++.- + ...-...+.+|+.
T Consensus 446 ~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~ 525 (1516)
T KOG1832|consen 446 ELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQ 525 (1516)
T ss_pred HHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHH
Confidence 55554444444444433222111111111222355666677666531 1 1122344445544
Q ss_pred hc-----CCCcc-HHHHHHcCChHHHHHHhcccCCC---CcchHHHHHHHHHHhhcCcccccC-CCCccccccchhHHHH
Q 002091 530 LS-----SVPQN-GLQMIKEGAVGPLVDLLLHHSSS---SSSLREETATAIMHLAVSTMYQES-SQTPVTLLESDKEIFM 599 (968)
Q Consensus 530 Ls-----~~~~~-~~~i~~~g~v~~Lv~lL~~~~~~---~~~~~~~a~~~L~~La~~~~~~~~-~~~~~~il~~~~~i~~ 599 (968)
-. ..-++ ++.-+..|.++..+.-+..+... +.+..+...+-+-.+......... .=..+..+..-+++..
T Consensus 526 Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~ 605 (1516)
T KOG1832|consen 526 YFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVT 605 (1516)
T ss_pred HHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHH
Confidence 22 11122 44444556666555544432211 112233333333333221110000 0001122333455666
Q ss_pred HHHhhcc--------CCHHHHHHHHHHHHHhccCCChhhHHHHHhh--------cCchHHHHHhhcc----CChhHHHHH
Q 002091 600 LFSLINL--------TGPNVQQRILQTFNALCRSPSAGNIKTTLTQ--------CSAIPVLVQLCEH----DNENVRANA 659 (968)
Q Consensus 600 l~~ll~~--------~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~--------~g~i~~Lv~ll~~----~~~~v~~~a 659 (968)
++.+... ...++..+|+.+|.-+..-|+ ++..+.+ ..++..++..-.. .+++++..|
T Consensus 606 ~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~---iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~A 682 (1516)
T KOG1832|consen 606 MLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPD---IQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPA 682 (1516)
T ss_pred HHHHHhcCccccccCcchHHHHHHHhheeeeEecch---HHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHH
Confidence 6666542 224567778888877765443 3333332 1144445443322 278999999
Q ss_pred HHHHHHhccCCChhHHHHhhcc----ccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhc
Q 002091 660 VKLFCCLVDDGDEAIIREHVGQ----KCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKN 735 (968)
Q Consensus 660 ~~~L~~Ls~~~~~~~~~~~~~~----~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~ 735 (968)
+.++.|++ ...++.+...+.. .+-+. ..+............+ ......+...+++..|+++|+-
T Consensus 683 L~vIincV-c~pp~~r~s~i~~v~S~~g~~r--~~l~~~~ks~~le~~l---------~~mw~~Vr~ndGIkiLl~Ll~~ 750 (1516)
T KOG1832|consen 683 LNVIINCV-CPPPTTRPSTIVAVGSQSGDRR--IFLGAGTKSAKLEQVL---------RQMWEAVRGNDGIKILLKLLQY 750 (1516)
T ss_pred Hhhhheee-cCCCCcchhhhhhccccCCCcc--ccccCCCchHHHHHHH---------HHHHHHHhcCccHHHHHHHHhc
Confidence 99999998 6554433222111 00000 0011111111111111 1233456678899999999986
Q ss_pred CCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCCh
Q 002091 736 GRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVI 775 (968)
Q Consensus 736 ~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i 775 (968)
..+.. ....+|.-||.+|.-|+. ++.+++.+.+.-++
T Consensus 751 k~P~t-~aD~IRalAc~~L~GLaR--~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 751 KNPPT-TADCIRALACRVLLGLAR--DDTVRQILTKLPLV 787 (1516)
T ss_pred cCCCC-cHHHHHHHHHHHHhcccc--CcHHHHHHHhCccc
Confidence 44332 457899999999999999 68888888765544
No 233
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.36 E-value=2.1 Score=53.04 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=103.3
Q ss_pred CHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhh-cCChHHHHHHHHHHhhhccc
Q 002091 725 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE-YGTTLTKEHAATSLARFSKN 803 (968)
Q Consensus 725 ~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~ 803 (968)
..|.+++..+..... .++.++..|.-+|+.+..- +.+... .-+|.|+..|. +++|.+|..+..+++.|+..
T Consensus 920 f~piv~e~c~n~~~~--sdp~Lq~AAtLaL~klM~i-Sa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLF--SDPELQAAATLALGKLMCI-SAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHhcCCCcC--CCHHHHHHHHHHHHHHhhh-hHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 346666666553322 4578999999999999875 443332 23799999999 67899999999999999965
Q ss_pred CCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccch
Q 002091 804 SLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQN 882 (968)
Q Consensus 804 s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~ 882 (968)
-+++-.| .-+.|..-|++.++.||..|.-.|.+|. .+
T Consensus 992 fpnlie~-------------------------------------~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----- 1029 (1251)
T KOG0414|consen 992 FPNLIEP-------------------------------------WTEHLYRRLRDESPSVRKTALLVLSHLILND----- 1029 (1251)
T ss_pred cccccch-------------------------------------hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----
Confidence 5443333 3577889999999999999999999998 43
Q ss_pred hhHHHHhcCcHHHHHHHhcCCChHHHHHHHH
Q 002091 883 GSKVLEDANAIDRMVRFLSSPSPKLQEKALD 913 (968)
Q Consensus 883 ~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~ 913 (968)
++.--|-+..+..++.++++.++.-|-.
T Consensus 1030 ---miKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 1030 ---MIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred ---hhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence 4555677788888889999988877763
No 234
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.20 E-value=0.11 Score=56.69 Aligned_cols=42 Identities=21% Similarity=0.536 Sum_probs=35.7
Q ss_pred cccccccCCCCce----ecCCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 267 YCPITRDVMVDPV----ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 267 ~cpi~~~~m~dpv----~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
+||+|++=|-+-| ++.|-|+|--.|+.+|+ ..+||+|+--..
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcC
Confidence 7999999998766 57899999999999996 568999876554
No 235
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.17 E-value=0.86 Score=47.67 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=67.8
Q ss_pred cccchHHhhcCChHHHHhhcc-CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC--CChHHHHHHH
Q 002091 837 IESSFCLLEANAVRPLVRVLE-DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS--PSPKLQEKAL 912 (968)
Q Consensus 837 ~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~--~~~~v~~~a~ 912 (968)
+.....+.+.++++.|+++|. ...+.++.+++.+|..+. +. ..+.+.+.+.+|+..+..++++ .+.+++-+++
T Consensus 123 p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~---p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~ 199 (257)
T PF08045_consen 123 PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDS---PENQRDFEELNGLSTVCSLLKSKSTDRELRLKCI 199 (257)
T ss_pred chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC---hHHHHHHHHhCCHHHHHHHHccccccHHHhHHHH
Confidence 344555668899999999995 456789999999999988 44 2778899999999999999954 5678999999
Q ss_pred HHHHHHhcChh
Q 002091 913 DSVERIFRLPE 923 (968)
Q Consensus 913 ~~L~~l~~~~~ 923 (968)
+.|.=++.++.
T Consensus 200 EFL~fyl~~E~ 210 (257)
T PF08045_consen 200 EFLYFYLMPET 210 (257)
T ss_pred HHHHHHHcccC
Confidence 98887776553
No 236
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.96 E-value=3 Score=43.71 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhc-cCchhhHHHhhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhc-CCCccHHHHHHcCChHHHHHHhc
Q 002091 478 VKMRMATTLAEME-LTDHHKASLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLS-SVPQNGLQMIKEGAVGPLVDLLL 554 (968)
Q Consensus 478 ~~~~aa~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls-~~~~~~~~i~~~g~v~~Lv~lL~ 554 (968)
....|..+|.-+. .++..|..+.+...+..|+++|. ...+.++.+++.+|..+. .++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3455667777764 46788888888999999999994 457889999999998877 68899999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHhhc
Q 002091 555 HHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 555 ~~~~~~~~~~~~a~~~L~~La~ 576 (968)
+...+ .+++-.++..|.-...
T Consensus 187 ~~~~~-~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTD-RELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccc-HHHhHHHHHHHHHHHc
Confidence 87654 6788888887766554
No 237
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.71 E-value=0.98 Score=39.91 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=48.8
Q ss_pred cCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHH--cCChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 502 GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIK--EGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 502 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
...+++++..+.+.+.++|..|+.+|+|++... +..+.. ..+++.|.+++.+.+ +. ...++..|-++.
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d---~~-Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPD---EN-VRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCc---hh-HHHHHHHHHHHh
Confidence 457899999999999999999999999998432 333332 246677777777654 44 455667776653
No 238
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.67 E-value=0.46 Score=32.01 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.9
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhcC
Q 002091 505 LGPLLHLVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
+|.++++++++++++|..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999863
No 239
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=89.51 E-value=0.55 Score=35.56 Aligned_cols=41 Identities=24% Similarity=0.616 Sum_probs=31.1
Q ss_pred ccccccc--CCCCceecCCc-----hhhhHHHHHHHHhc-CCCCCCCCC
Q 002091 267 YCPITRD--VMVDPVETSSG-----QTFERSAIEKWFSD-GNNLCPLTM 307 (968)
Q Consensus 267 ~cpi~~~--~m~dpv~~~~g-----~t~~r~~i~~~~~~-~~~~CP~t~ 307 (968)
.|-||++ --.+|.+.||. +-+=+.|+.+|+.. +..+||+++
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3778876 34588888874 56789999999974 467899974
No 240
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.28 Score=52.60 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=33.8
Q ss_pred ccccccccCCCCce----ecCCchhhhHHHHHHHHhc--CCCCCCCCCCcCCCCC
Q 002091 266 FYCPITRDVMVDPV----ETSSGQTFERSAIEKWFSD--GNNLCPLTMTVLDTSI 314 (968)
Q Consensus 266 ~~cpi~~~~m~dpv----~~~~g~t~~r~~i~~~~~~--~~~~CP~t~~~l~~~~ 314 (968)
-.|.||-+.+-.-- |-.|||+|.-.|+..||.- .+.+||+|+-.+....
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence 46889955442111 2349999999999999973 4468999985554333
No 241
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.38 E-value=25 Score=36.79 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=80.0
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHhccCCc-hhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh
Q 002091 423 ILLLVT-MASSDDNQASRDAQELLENLSFSD-DNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 500 (968)
Q Consensus 423 i~~Lv~-lL~s~~~~~~~~a~~~L~~Ls~~~-~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~ 500 (968)
+|.|.. +-+..+++.+...+.+|..++.++ .+...+ +..|..+...+..+.+.-+...+..+-..+. +.
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~--- 72 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH--- 72 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH---
Confidence 344444 335678889999999999998777 554443 3445555566666655555556655532211 11
Q ss_pred hcCchHHHHHh--h------hcC--CHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhc-ccCCCCcchHHHHHH
Q 002091 501 EGNVLGPLLHL--V------SRG--DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLL-HHSSSSSSLREETAT 569 (968)
Q Consensus 501 ~~g~i~~Lv~l--L------~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~~~~a~~ 569 (968)
.+.+..++.. + .++ ..+.....+.++..+|...+++ -...++.+..+|. +.+ +..+..++.
T Consensus 73 -f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~---~~~~alale 144 (234)
T PF12530_consen 73 -FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCD---EVAQALALE 144 (234)
T ss_pred -HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhcccc---HHHHHHHHH
Confidence 0333444433 1 111 2344555566788888644431 1225677778884 433 678888999
Q ss_pred HHHHhhc
Q 002091 570 AIMHLAV 576 (968)
Q Consensus 570 ~L~~La~ 576 (968)
+|..|+.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 9999984
No 242
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.23 E-value=52 Score=40.68 Aligned_cols=289 Identities=13% Similarity=0.170 Sum_probs=155.5
Q ss_pred hHHHHHH-hhcCCCHHHHHHHHHHHHhcc-CCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc--CchhhH
Q 002091 422 CILLLVT-MASSDDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL--TDHHKA 497 (968)
Q Consensus 422 ~i~~Lv~-lL~s~~~~~~~~a~~~L~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~--~~~~~~ 497 (968)
++..|-. +|++.+.+.+...+..+..+- .+++|-...-+.-.++.++.-+..-+..+|.....+|-.-.. +..-..
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeq 546 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQ 546 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHH
Confidence 4555554 356777777777777777764 677776666667778888877776666677666655533210 111011
Q ss_pred HHhhcCchHHHHHhhhcC-CHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccC-----CCCcchHHHHHHH
Q 002091 498 SLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHS-----SSSSSLREETATA 570 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~~~~~~~~a~~~ 570 (968)
. +-.|.-+|+.+ +...+..-+....+|-+ +...++.+.+.|.++.|...++... +....+-+. .
T Consensus 547 E------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvseh---y 617 (2799)
T KOG1788|consen 547 E------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEH---Y 617 (2799)
T ss_pred H------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHH---h
Confidence 1 12344455544 23334444444455554 5567888888999999988876521 100011110 0
Q ss_pred HHHhhcCcccccCCCCccccccchh-------HHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHH
Q 002091 571 IMHLAVSTMYQESSQTPVTLLESDK-------EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPV 643 (968)
Q Consensus 571 L~~La~~~~~~~~~~~~~~il~~~~-------~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~ 643 (968)
=.|.... .-+..-+....++.+.. -.+.+..++. ...-..+|..+.+ .+.+.+..++++.++..
T Consensus 618 drnpss~-sf~~~ld~~daiisspklmeSgsgklplfevllt------itvgwDcLisllK--nnteNqklFreanGvkl 688 (2799)
T KOG1788|consen 618 DRNPSSP-SFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLT------ITVGWDCLISLLK--NNTENQKLFREANGVKL 688 (2799)
T ss_pred hcCCCCc-hhhhccccccceeecchhhcccCCccchhhhhhh------hhchHHHHHHHHh--ccchhhHHHHhhcCceE
Confidence 0011110 00000000111221110 0111111110 0011233444443 36677788999999999
Q ss_pred HHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-------CC----HHHHHHHHHHHhcCCC
Q 002091 644 LVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-------HN----EEEIASAMGILSKLPE 712 (968)
Q Consensus 644 Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-------~~----~~~~~~Al~~L~nL~~ 712 (968)
++.++- +++-|...++++..|....+.. +...-+..||+.|++. .+ .......+++++.+..
T Consensus 689 ilpfli--ndehRSslLrivscLitvdpkq-----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivg 761 (2799)
T KOG1788|consen 689 ILPFLI--NDEHRSSLLRIVSCLITVDPKQ-----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVG 761 (2799)
T ss_pred EEEeee--chHHHHHHHHHHHHHhccCccc-----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHc
Confidence 988883 4566666777777775222211 1123456677777762 11 1344566788888877
Q ss_pred -CHHhHHHHHHcCCHHHHHHHhhc
Q 002091 713 -VPQFTQWLLDAGALPIVLNFLKN 735 (968)
Q Consensus 713 -~~~~~~~l~~~g~l~~Lv~lL~~ 735 (968)
+-..+....+++++..|...|..
T Consensus 762 vngsaqrvFgeatGFslLlttLht 785 (2799)
T KOG1788|consen 762 VNGSAQRVFGEATGFSLLLTTLHT 785 (2799)
T ss_pred cCchheeehhccccHHHHHHHHHH
Confidence 77777788899999998888865
No 243
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.22 E-value=0.32 Score=44.23 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=59.3
Q ss_pred ccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhcc
Q 002091 682 KCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT 758 (968)
Q Consensus 682 ~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~ 758 (968)
..+..|+++|..+.++.+..-|+.-|+.++. .|..+..+-+.|+=..+..++.+ +++.++.+|+.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h------~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH------EDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC------CCHHHHHHHHHHHHHHH
Confidence 4688899999766677788889999999999 89998888888999999999999 78999999999988764
No 244
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.92 E-value=48 Score=40.57 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhc
Q 002091 475 PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLL 554 (968)
Q Consensus 475 ~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~ 554 (968)
.+.++..|..++..-+..... .-..++.+..|+++....+.++......+|...+..+.......+.-+.|.++.+..
T Consensus 504 ~~~~ki~a~~~~~~~~~~~vl--~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKVKVL--LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CCchhHHHHHHHHhccCceec--cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 455666666666555411110 011367888889988888888998999999999976655556666777888887776
Q ss_pred ccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCC----HHHHHHHHHHHHHhccCCChhh
Q 002091 555 HHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTG----PNVQQRILQTFNALCRSPSAGN 630 (968)
Q Consensus 555 ~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~----~~~~~~al~~L~~L~~~~~~~~ 630 (968)
..+.+ +.+...+-.++..|+....+... -.+..+|.+++.+.... +..+.-++..|..+.+...++-
T Consensus 582 k~s~D-P~V~~~~qd~f~el~q~~~~~g~--------m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 582 KYSED-PQVASLAQDLFEELLQIAANYGP--------MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HhcCC-chHHHHHHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 65544 67777777777766652211111 12457888999888554 6677778888877776644432
Q ss_pred HHHHHhhcCchHHHHHh-hccCChhHHHHHHHHHHHhccCCCh
Q 002091 631 IKTTLTQCSAIPVLVQL-CEHDNENVRANAVKLFCCLVDDGDE 672 (968)
Q Consensus 631 ~~~~i~~~g~i~~Lv~l-l~~~~~~v~~~a~~~L~~Ls~~~~~ 672 (968)
-+.+.. -+.|++.+. +++++.....++..+|+.+.+...+
T Consensus 653 -~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 653 -PNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred -cHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 222322 256666664 4666788888999999998844333
No 245
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=88.86 E-value=3 Score=41.98 Aligned_cols=124 Identities=15% Similarity=0.232 Sum_probs=79.4
Q ss_pred cCChhHHHHHHHHHHHhccCCChhHHHHh----------------hccccHHHHHHHhcc-----CCCHHHHHHHHHHHh
Q 002091 650 HDNENVRANAVKLFCCLVDDGDEAIIREH----------------VGQKCLETLVTIIQS-----SHNEEEIASAMGILS 708 (968)
Q Consensus 650 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~----------------~~~~~i~~Lv~lL~~-----~~~~~~~~~Al~~L~ 708 (968)
+.+......++.+|.||+.... ....+ .....+..|+.++.. ....+-....+.+|.
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDS--GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred CCCcchHHHHHHHHHHhccchH--HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 3444556677778888873221 11111 122467788887755 123345567788999
Q ss_pred cCCCCHHhHHHHHHcC--C--HHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHH---cCChHHHHHH
Q 002091 709 KLPEVPQFTQWLLDAG--A--LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE---AGVIPKLVQL 781 (968)
Q Consensus 709 nL~~~~~~~~~l~~~g--~--l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~---~g~i~~Lv~l 781 (968)
|++..++.++.+++.. . +..|+.+..+ .+.--|..++++|.|+|.. .+.-..+.. .+++|.|..-
T Consensus 84 NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~------~s~iRR~Gva~~IrNccFd--~~~H~~LL~~~~~~iLp~LLlP 155 (192)
T PF04063_consen 84 NLSQLPEGRQFFLDPQRYDGPLQKLLPFTEH------KSVIRRGGVAGTIRNCCFD--TDSHEWLLSDDEVDILPYLLLP 155 (192)
T ss_pred HhcCCHHHHHHHhCchhhhhHHHHHHHHhcc------CcHHHHHHHHHHHHHhhcc--HhHHHHhcCchhhhhHHHHHhh
Confidence 9999999999998654 3 6677777776 4455688999999999994 443344443 3566665555
Q ss_pred hh
Q 002091 782 LE 783 (968)
Q Consensus 782 L~ 783 (968)
|.
T Consensus 156 La 157 (192)
T PF04063_consen 156 LA 157 (192)
T ss_pred cc
Confidence 54
No 246
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.54 E-value=0.33 Score=53.56 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=29.5
Q ss_pred ceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 278 PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 278 pv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
=.++||.|.|-|.|+++|.+.-.-.||.|+.++.+
T Consensus 601 Ym~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 601 YMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34568999999999999997555689999999865
No 247
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=0.21 Score=53.91 Aligned_cols=60 Identities=30% Similarity=0.541 Sum_probs=45.0
Q ss_pred cccccccccCCCCc-----eecCCchhhhHHHHHHHHhc-CCCCCCCCCCcCCCCCCccCHhHHHH
Q 002091 265 SFYCPITRDVMVDP-----VETSSGQTFERSAIEKWFSD-GNNLCPLTMTVLDTSILRPNKTLRQS 324 (968)
Q Consensus 265 ~~~cpi~~~~m~dp-----v~~~~g~t~~r~~i~~~~~~-~~~~CP~t~~~l~~~~l~pn~~l~~~ 324 (968)
.-+||||++=..=| |.+.|||-|--+||++|+-+ ....||.|..+-....+.|-+++|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 35799999877655 45789999999999999942 23569999776666667776666543
No 248
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.24 E-value=7.6 Score=44.30 Aligned_cols=153 Identities=15% Similarity=0.229 Sum_probs=105.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCH----HHHHHHHHHHHHhcCCCccHHHH
Q 002091 465 KHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDI----QMKKVAVKALRNLSSVPQNGLQM 540 (968)
Q Consensus 465 ~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~~Ls~~~~~~~~i 540 (968)
..+.+++.+|++..+..+...|.+++.+......+....++..|..++.+++. ++...++.++..|-...-..-..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 44677888999999999999999999999888889998999999999998753 55666666666654321111111
Q ss_pred HHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002091 541 IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN 620 (968)
Q Consensus 541 ~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~ 620 (968)
+...+|.....+...... ...+-..|+..|-++..++..... .+.++-.+..++..+...+..++..++..+.
T Consensus 166 ~~~~fV~~~a~~V~~~~~-~a~~~~~AL~~LE~~vl~s~~~~~------~v~eev~i~~li~hlq~~n~~i~~~aial~n 238 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKRE-DANTLLAALQMLESLVLGSDTLRQ------LVAEEVPIETLIRHLQVSNQRIQTCAIALLN 238 (713)
T ss_pred cccHHHHHHHHHHhhhhh-cccchHHHHHHHHHHHhCChHHHH------HHHhcCcHHHHHHHHHhcchHHHHHHHHHHH
Confidence 112223333333322221 256778888888888876543332 5666777888888888888888888887777
Q ss_pred Hhcc
Q 002091 621 ALCR 624 (968)
Q Consensus 621 ~L~~ 624 (968)
.+..
T Consensus 239 al~~ 242 (713)
T KOG2999|consen 239 ALFR 242 (713)
T ss_pred HHHh
Confidence 7764
No 249
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=88.18 E-value=20 Score=40.29 Aligned_cols=91 Identities=19% Similarity=0.170 Sum_probs=61.2
Q ss_pred hHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC-CHHHHH-HHHHHHHHhcCCCccHHHH
Q 002091 464 FKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG-DIQMKK-VAVKALRNLSSVPQNGLQM 540 (968)
Q Consensus 464 v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~-~a~~aL~~Ls~~~~~~~~i 540 (968)
++.+++-|..+ +..+|..++--|..-..+++.+..+...|.+..+++.+.+. +..... .++.+++-++.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 45566666633 45778888877877788899999999999999999999543 332444 4444445554454444444
Q ss_pred HHcCChHHHHHHhc
Q 002091 541 IKEGAVGPLVDLLL 554 (968)
Q Consensus 541 ~~~g~v~~Lv~lL~ 554 (968)
.+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 45566666677777
No 250
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.97 E-value=15 Score=43.14 Aligned_cols=122 Identities=21% Similarity=0.267 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHHHHHhc-cCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHH
Q 002091 473 AGPESVKMRMATTLAEME-LTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLV 550 (968)
Q Consensus 473 ~~~~~~~~~aa~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv 550 (968)
.|+...+..|+..|.... ..++.. ..+|..+++|+.+++..+|..|.+.|..+|. ++++..+++ +.|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHH
Confidence 367888999999988773 344433 3478999999999999999999999999996 566766654 5788
Q ss_pred HHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhc---cCCHHHHHHHHHHHHH
Q 002091 551 DLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN---LTGPNVQQRILQTFNA 621 (968)
Q Consensus 551 ~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~---~~~~~~~~~al~~L~~ 621 (968)
++|...+ +.-...+-.+|..|.. ....+.+..++..+. .++..+++.++..|..
T Consensus 103 QlL~tdd---~~E~~~v~~sL~~ll~--------------~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 103 QLLQTDD---PVELDAVKNSLMSLLK--------------QDPKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHTT------HHHHHHHHHHHHHHHH--------------H-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHhccc---HHHHHHHHHHHHHHHh--------------cCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 9998644 2223333334444442 222345555555554 5677889988877743
No 251
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=82 Score=39.08 Aligned_cols=326 Identities=11% Similarity=0.164 Sum_probs=160.4
Q ss_pred cChHHHHHHhhc--------CCCHHHHHHHHHHHHhcc----CCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHH
Q 002091 420 QGCILLLVTMAS--------SDDNQASRDAQELLENLS----FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 487 (968)
Q Consensus 420 ~g~i~~Lv~lL~--------s~~~~~~~~a~~~L~~Ls----~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~ 487 (968)
+|.++.++..+. ..++...+.|..++.+++ +....+..| +.=.+..+...+++...-.|..|++++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 466777777775 235677778888888886 222333332 3233445555667777889999999999
Q ss_pred HhccCc-hhhHHHhhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcCCCc-cHHHHHHc--CChHHHHHHhcccCCCCcc
Q 002091 488 EMELTD-HHKASLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVPQ-NGLQMIKE--GAVGPLVDLLLHHSSSSSS 562 (968)
Q Consensus 488 ~L~~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~--g~v~~Lv~lL~~~~~~~~~ 562 (968)
..+..+ .....+ ..++..-.+.|. +.+..++-.|+-||..+-.+.+ +...+... +.++.|+.+.+....
T Consensus 488 ~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En---- 561 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN---- 561 (1010)
T ss_pred HHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch----
Confidence 987433 111111 234455556666 6677899999999999886554 33334332 233344444443321
Q ss_pred hHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccC----CChhhHHHHHhhc
Q 002091 563 LREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRS----PSAGNIKTTLTQC 638 (968)
Q Consensus 563 ~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~----~~~~~~~~~i~~~ 638 (968)
+.-..++-.+.. .+-+-+..--+++..+...++..+... .+..+ -+.+...
T Consensus 562 --d~Lt~vme~iV~----------------------~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~d-dk~iaA~ 616 (1010)
T KOG1991|consen 562 --DDLTNVMEKIVC----------------------KFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDD-DKAIAAS 616 (1010)
T ss_pred --hHHHHHHHHHHH----------------------HHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccch-HHHHHHH
Confidence 111112222211 000001111122333333333333321 01111 1122222
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhH
Q 002091 639 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFT 717 (968)
Q Consensus 639 g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~ 717 (968)
|.+..+-.++.+- ...++.... ++.-..+.+-.+|++ .-.+.-..++.+..++.. .+++.
T Consensus 617 GiL~Ti~Til~s~-----------------e~~p~vl~~-le~~~l~vi~~iL~~-~i~dfyeE~~ei~~~~t~~~~~Is 677 (1010)
T KOG1991|consen 617 GILRTISTILLSL-----------------ENHPEVLKQ-LEPIVLPVIGFILKN-DITDFYEELLEIVSSLTFLSKEIS 677 (1010)
T ss_pred HHHHHHHHHHHHH-----------------hccHHHHHH-HHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhhhhhcccC
Confidence 3333333333211 001111111 122233333334444 344566777777777776 55554
Q ss_pred HHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH-HHcCChHHHHHHhhc--CChHHHHHHH
Q 002091 718 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA-AEAGVIPKLVQLLEY--GTTLTKEHAA 794 (968)
Q Consensus 718 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~-~~~g~i~~Lv~lL~~--~~~~v~~~Aa 794 (968)
-.++ |.++.+.+.++. .....-....-+|.|+..-+.+.....- .-.-.+..+-..|.+ +...=...|+
T Consensus 678 p~mW--~ll~li~e~~~~------~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~ 749 (1010)
T KOG1991|consen 678 PIMW--GLLELILEVFQD------DGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESAC 749 (1010)
T ss_pred HHHH--HHHHHHHHHHhh------hhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 4444 567778888877 4456667777888887765333221111 111123344445554 3334455677
Q ss_pred HHHhhhcccC
Q 002091 795 TSLARFSKNS 804 (968)
Q Consensus 795 ~aL~nl~~~s 804 (968)
..+.-+..+-
T Consensus 750 kLle~iiL~~ 759 (1010)
T KOG1991|consen 750 KLLEVIILNC 759 (1010)
T ss_pred HHHHHHHHHh
Confidence 7777776433
No 252
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=87.63 E-value=17 Score=40.88 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=60.8
Q ss_pred chhHHHHHHhhcc--ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc-CCCH-HHHHHHHHHHHhccCCchh
Q 002091 379 DDAVESIVRSLGR--RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-SDDN-QASRDAQELLENLSFSDDN 454 (968)
Q Consensus 379 ~~~v~~lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~~~-~~~~~a~~~L~~Ls~~~~n 454 (968)
.+-++.++.-+.+ +...++.++-.|..-+.++.+|..+.. .|.+..++..+. ..+. .....++.++.-++.+..+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 4456667766653 345788888788877779999999998 899999999884 3333 3333344444444555555
Q ss_pred HHHHHhCCchHHHHHHHh
Q 002091 455 VVQMAKANYFKHLLQRLS 472 (968)
Q Consensus 455 ~~~i~~~g~v~~Lv~~L~ 472 (968)
-..+...+....++.++.
T Consensus 99 ~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhhchhHHHHHHHHhc
Confidence 555445555566666666
No 253
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.37 E-value=37 Score=38.37 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=89.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHhccCCc----hhHHHHHhCCchHHHHHHHhcC-------CHHHHHHHHHHHHHhccCchh
Q 002091 427 VTMASSDDNQASRDAQELLENLSFSD----DNVVQMAKANYFKHLLQRLSAG-------PESVKMRMATTLAEMELTDHH 495 (968)
Q Consensus 427 v~lL~s~~~~~~~~a~~~L~~Ls~~~----~n~~~i~~~g~v~~Lv~~L~~~-------~~~~~~~aa~~L~~L~~~~~~ 495 (968)
..++...+...+-.|.-..-.+.+++ .||..+.++=+++.+-++|.++ +...+..+..+|.-.+..++.
T Consensus 17 ~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pEl 96 (698)
T KOG2611|consen 17 LKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPEL 96 (698)
T ss_pred HHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhh
Confidence 34444444555555555555555443 4788888988888888888654 235666777777777776654
Q ss_pred hH--HHhhcCchHHHHHhhhcC-CHH------HHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcc
Q 002091 496 KA--SLLEGNVLGPLLHLVSRG-DIQ------MKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLH 555 (968)
Q Consensus 496 ~~--~i~~~g~i~~Lv~lL~~~-~~~------~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~ 555 (968)
.. .+ -+.||.|.+.+..+ +++ ....+-.+|+.++..+.....++..|+++.+.++-.-
T Consensus 97 Ash~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 97 ASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred ccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 32 22 25689999998754 333 7889999999999998888999999999999876543
No 254
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.64 E-value=15 Score=40.08 Aligned_cols=106 Identities=22% Similarity=0.219 Sum_probs=74.8
Q ss_pred HHHHH-HhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc--hhhH--
Q 002091 423 ILLLV-TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD--HHKA-- 497 (968)
Q Consensus 423 i~~Lv-~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~--~~~~-- 497 (968)
+..|+ ..+.+.++.+|+.|+++|.-.+.-+... + ...++.+...+..++.+++..|+.+++.+.... +.-.
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~---a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL---A-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH---H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 33343 4567889999999999999988544421 1 122466777787789999999999999984321 1111
Q ss_pred -----HHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC
Q 002091 498 -----SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 498 -----~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
.......+..+.+.+.+.+++++..|+..+.+|-.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 12224567788888888899999999999998864
No 255
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.32 E-value=64 Score=39.66 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=115.9
Q ss_pred HHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCCh--HHHHHHh
Q 002091 706 ILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVI--PKLVQLL 782 (968)
Q Consensus 706 ~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i--~~Lv~lL 782 (968)
+|+++.. +++.++.+++.|++..+...++.- ...+++-.+.+.+.|++.. .+.+........+ ..+-.++
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-----~~~~~~~~il~~l~n~~~~--~~~~~~~~~~~~~~~~~f~~~~ 566 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-----DNEELHRKILGLLGNLAEV--LELRELLMIFEFIDFSVFKVLL 566 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHH--hhhhhhhhHHHHHHHHHHHHHH
Confidence 8889999 999999999999999999999973 3567888999999999975 2222221111111 2333344
Q ss_pred hcCCh-HHHHHHHHHHhhhcccCCCCCCCCCCCCccc-ccCCCCCcccccCCCccCcccchHHhhcCChHH-HHhhcc-C
Q 002091 783 EYGTT-LTKEHAATSLARFSKNSLGLSRPIPKRKGFW-CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRP-LVRVLE-D 858 (968)
Q Consensus 783 ~~~~~-~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~-~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~-Lv~lL~-~ 858 (968)
..-+. +.-..|+..|+.+..++.. .+ ..++| |.........+.....+. ...-.....+ +.+++. +
T Consensus 567 ~~w~~~ersY~~~siLa~ll~~~~~--~~---~~~~r~~~~~~l~e~i~~~~~~~~-----~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 567 NKWDSIERSYNAASILALLLSDSEK--TT---ECVFRNSVNELLVEAISRWLTSEI-----RVINDRSFFPRILRILRLS 636 (699)
T ss_pred hhcchhhHHHHHHHHHHHHHhCCCc--Cc---cccchHHHHHHHHHHhhccCccce-----eehhhhhcchhHHHHhccc
Confidence 44344 8888999999999876654 11 11122 111000000111100000 0111223334 555555 4
Q ss_pred CChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcC-CChHHHHHHHHHHHHH
Q 002091 859 PDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSS-PSPKLQEKALDSVERI 918 (968)
Q Consensus 859 ~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l 918 (968)
..+..+.-|++++.++.. ...+++..+.+.|+++.+.++-.. ....+++.+..++.+.
T Consensus 637 ~~~g~~lWal~ti~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLE--QNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred CCCchHHHHHHHHHHHHH--cChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 566778888888888881 122588889999999988887732 2455666665555443
No 256
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.25 E-value=4.3 Score=40.78 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHH
Q 002091 698 EEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 777 (968)
Q Consensus 698 ~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~ 777 (968)
.-...|+.+|..+++.++.+...+++.+--.+-..|...+++ ++...+|-.++++++.+...+++.+...+....++|.
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~-~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSN-SKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccC-CccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 345678888888888888888888888766666666654332 2567889999999999999888888889999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHhhhc
Q 002091 778 LVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 778 Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
+.+++..++..-|.-|+..+..+.
T Consensus 194 cLrIme~gSElSktvaifI~qkil 217 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999999888888887777765
No 257
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.93 E-value=4.9 Score=39.18 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=94.1
Q ss_pred hHHHHHhhh--cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHH-HHhcccCCCCcchHHHHHHHHHHhhcCcccc
Q 002091 505 LGPLLHLVS--RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLV-DLLLHHSSSSSSLREETATAIMHLAVSTMYQ 581 (968)
Q Consensus 505 i~~Lv~lL~--~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 581 (968)
+..++..|. ...++++..+.-++..+- +..+....+ .+...+ ..+.+.. .+-...+..++..|-..+..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~d- 76 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEGE---MDSLIIAFSALTALFPGPPD- 76 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHH-
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHH-
Confidence 344555444 356788888888888883 333333222 233333 3343333 33466677777777643322
Q ss_pred cCCCCccccccchhHHHHHHHhhc--cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc-CChh-HHH
Q 002091 582 ESSQTPVTLLESDKEIFMLFSLIN--LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH-DNEN-VRA 657 (968)
Q Consensus 582 ~~~~~~~~il~~~~~i~~l~~ll~--~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~-v~~ 657 (968)
.+..++..+|+.+.++.+.. ..+...+..++.+|..-|. .+..|..+.+. +++.|-.+.+. +++. ++.
T Consensus 77 ----v~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~---d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~ 148 (157)
T PF11701_consen 77 ----VGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI---DKSCRTFISKN-YVSWLKELYKNSKDDSEIRV 148 (157)
T ss_dssp ----HHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT---SHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHH
T ss_pred ----HHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc---cHHHHHHHHHH-HHHHHHHHHccccchHHHHH
Confidence 12357888999999999999 8889999999999988874 35556666654 79999999954 4555 788
Q ss_pred HHHHHHHHh
Q 002091 658 NAVKLFCCL 666 (968)
Q Consensus 658 ~a~~~L~~L 666 (968)
.|+-.|..|
T Consensus 149 ~A~v~L~Kl 157 (157)
T PF11701_consen 149 LAAVGLCKL 157 (157)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 887777643
No 258
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.44 E-value=0.42 Score=54.48 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=41.6
Q ss_pred CcccccccccCC----CCceecCCchhhhHHHHHHHHhcCCCCCC--CCC--CcCCCCCCccCHhHHHHH
Q 002091 264 QSFYCPITRDVM----VDPVETSSGQTFERSAIEKWFSDGNNLCP--LTM--TVLDTSILRPNKTLRQSI 325 (968)
Q Consensus 264 ~~~~cpi~~~~m----~dpv~~~~g~t~~r~~i~~~~~~~~~~CP--~t~--~~l~~~~l~pn~~l~~~I 325 (968)
+-++|+||...| ..||-+-||||.||.|.+.-.+ .+|| ... ..++..+..-|+++-+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCCCCccccchhcChhhcchhHHHHHhh
Confidence 457899997777 4899999999999999998763 4666 222 223455666677664433
No 259
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.34 E-value=6.5 Score=46.02 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCC
Q 002091 743 RFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSP 822 (968)
Q Consensus 743 ~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~ 822 (968)
+...+.-|+..+..+... -|+.++.. +..+++|..+.+..+|..|...|-.++.+++.
T Consensus 35 ~~k~K~Laaq~I~kffk~-FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~---------------- 92 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKH-FPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE---------------- 92 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC--GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T----------------
T ss_pred CHHHHHHHHHHHHHHHhh-ChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----------------
Confidence 456788888889888887 77776654 67899999999999999999999999865432
Q ss_pred CCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 823 PPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 823 ~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
.-..+++.|++||.++++.....+-.+|..|.
T Consensus 93 ---------------------~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 93 ---------------------HVSKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp ----------------------HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred ---------------------HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 11237889999999988877777777777777
No 260
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.34 E-value=18 Score=40.74 Aligned_cols=144 Identities=20% Similarity=0.218 Sum_probs=87.9
Q ss_pred hHHHHHhhhc-CCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHH-HHHHhhcCccccc
Q 002091 505 LGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETAT-AIMHLAVSTMYQE 582 (968)
Q Consensus 505 i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~-~L~~La~~~~~~~ 582 (968)
+..+++.|++ .+...++.|++.|..++.+...+-.=...-+|..+++.-.+.. +++...|.. ++.-++....-
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~---~~v~~~Aeed~~~~las~~P~-- 405 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQ---DEVMRVAEEDCLTTLASHLPL-- 405 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHhhCch--
Confidence 4567788877 6788999999999999876554321111113333444333332 444444444 34444442211
Q ss_pred CCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHH
Q 002091 583 SSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKL 662 (968)
Q Consensus 583 ~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~ 662 (968)
..|..+..++-..+...--.++..+..++..-...+.-..+. .+.|.+++-..+.+..+|..|+.+
T Consensus 406 ------------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~--diaP~~iqay~S~SS~VRKtaVfC 471 (516)
T KOG2956|consen 406 ------------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP--DIAPCVIQAYDSTSSTVRKTAVFC 471 (516)
T ss_pred ------------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh--hhhhHHHHHhcCchHHhhhhHHHh
Confidence 123333333333444444556777777776555555555554 479999999999999999999998
Q ss_pred HHHhc
Q 002091 663 FCCLV 667 (968)
Q Consensus 663 L~~Ls 667 (968)
|..+.
T Consensus 472 LVamv 476 (516)
T KOG2956|consen 472 LVAMV 476 (516)
T ss_pred HHHHH
Confidence 88886
No 261
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.28 E-value=7.3 Score=45.81 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccC
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFS 821 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~ 821 (968)
++..+|..++.+|..+... +.+.- .-.-.+....+..-+.+..|.||..|..+|+.+-.+...
T Consensus 97 kdk~VRfrvlqila~l~d~-~~eid-d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d--------------- 159 (892)
T KOG2025|consen 97 KDKKVRFRVLQILALLSDE-NAEID-DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD--------------- 159 (892)
T ss_pred cchhHHHHHHHHHHHHhcc-ccccC-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC---------------
Confidence 6788999999999998874 22222 222234556666666678899999999999998532211
Q ss_pred CCCCcccccCCCccCcccchHHhhcCChHHHHhhcc-CCChhhhHHHHHHHHhhh
Q 002091 822 PPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE-DPDHGACEASLDALVTLI 875 (968)
Q Consensus 822 ~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~~L~ 875 (968)
. +..++..|..+++ +++++||.++ |.++.
T Consensus 160 ----e------------------e~~v~n~l~~liqnDpS~EVRRaa---LsnI~ 189 (892)
T KOG2025|consen 160 ----E------------------ECPVVNLLKDLIQNDPSDEVRRAA---LSNIS 189 (892)
T ss_pred ----C------------------cccHHHHHHHHHhcCCcHHHHHHH---HHhhc
Confidence 1 2236788888888 5788899865 55666
No 262
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=84.88 E-value=4 Score=33.81 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcC
Q 002091 700 IASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 773 (968)
Q Consensus 700 ~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g 773 (968)
...|+.++++++.++.....+.+.++++.++++..+. +...+|--+..+|+-++. +.+-.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s-----~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS-----PVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC-----CccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 4689999999999888888888899999999999874 457789999999999888 677776666654
No 263
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=84.88 E-value=60 Score=34.91 Aligned_cols=225 Identities=11% Similarity=0.157 Sum_probs=142.0
Q ss_pred HhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCC--ChhHHHHhhc--cccHHHHHHHhccCCC-HHHHHHHHHHHhc
Q 002091 635 LTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDG--DEAIIREHVG--QKCLETLVTIIQSSHN-EEEIASAMGILSK 709 (968)
Q Consensus 635 i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~--~~~~~~~~~~--~~~i~~Lv~lL~~~~~-~~~~~~Al~~L~n 709 (968)
+-.+|....|+..+...+-+.+..+.....++-... +-......+. ...+..|+.- ..+ .++.-.+-..|..
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNMLRE 151 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHHHH
Confidence 344678888888888888788888888777775211 1111112211 1233333333 332 4555555566666
Q ss_pred CCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCC----hHHHHHHhhcC
Q 002091 710 LPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGV----IPKLVQLLEYG 785 (968)
Q Consensus 710 L~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~----i~~Lv~lL~~~ 785 (968)
....+...+.++...-+......++. +.-++..-|......+... ..-....+...+. ...--.++.++
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~------p~FdiasdA~~tfK~llt~-Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~ 224 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQL------PNFDIASDAFSTFKELLTR-HKSVVAEFLIRNYDNFFAEVYEKLLRSE 224 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhc------cchHHHHHHHHHHHHHHHH-hHHHHHHHHHhChhhhHHHHHHHHhccc
Confidence 66678888888888888888777777 4445666666666655554 2333333433332 33366788889
Q ss_pred ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhH
Q 002091 786 TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACE 865 (968)
Q Consensus 786 ~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 865 (968)
+.-+++.+..+|+.+-.+.++ +..-...+.+-..+..+..+|+++..+++.
T Consensus 225 Nyvtkrqs~kllg~llldr~N-----------------------------~~~M~kYiss~enLKlmM~llrdkskniQ~ 275 (342)
T KOG1566|consen 225 NYVTKRQSLKLLGELLLDRSN-----------------------------SAVMTKYISSPENLKLMMNLLRDKSKNIQL 275 (342)
T ss_pred ceehHHHHHHhHHHHHhCCCc-----------------------------HHHHHHHhcCHHHHHHHHHHhhCccccchH
Confidence 999999999999999865544 111223334446788899999999999999
Q ss_pred HHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHh
Q 002091 866 ASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFL 900 (968)
Q Consensus 866 ~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll 900 (968)
.|-....... .+.+.++....+.... ++|++++
T Consensus 276 eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l 309 (342)
T KOG1566|consen 276 EAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELL 309 (342)
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHH
Confidence 8988888888 7766665555555442 3444444
No 264
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=84.84 E-value=0.51 Score=50.60 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=39.6
Q ss_pred cccccccCCCCceecCCchhhhHHHHHHHHhc-CCCCCCCCCCcCC
Q 002091 267 YCPITRDVMVDPVETSSGQTFERSAIEKWFSD-GNNLCPLTMTVLD 311 (968)
Q Consensus 267 ~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~-~~~~CP~t~~~l~ 311 (968)
.|.||-+==+|--|=+|||-.|-.|+..|... ++.+||.|+-.+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 69999999999889999999999999999854 4789999987663
No 265
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.69 E-value=0.56 Score=50.27 Aligned_cols=72 Identities=24% Similarity=0.272 Sum_probs=56.3
Q ss_pred cccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhcccccccccCccc
Q 002091 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKL 344 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~~~~~~~~~~~l 344 (968)
.-.|.+++..|.|||-+..|..||-..|-.|+.. +.+=|+|+++|+-..|++=.--| ...+...||.+....
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL~F~K-------ns~geyhcPvlfk~F 111 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKLKFHK-------NSEGEYHCPVLFKVF 111 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceeeeecc-------CCCCcccCceeeeee
Confidence 4579999999999999999999999999999975 67899999999888876521001 133446788775544
No 266
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=84.60 E-value=82 Score=36.19 Aligned_cols=346 Identities=15% Similarity=0.153 Sum_probs=178.4
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcC-CHHHHHHHHHHHHHhcc-Cchh---
Q 002091 424 LLLVTMASSDDN---QASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG-PESVKMRMATTLAEMEL-TDHH--- 495 (968)
Q Consensus 424 ~~Lv~lL~s~~~---~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~-~~~~--- 495 (968)
|.|...|...+. ...+....+|..+|.+.+-...+.- ..+..+-...+.+ +.+.-..++.+|.++.. ..+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 566777754433 5667788888888876664333322 2223333333322 34444556666666522 1111
Q ss_pred --hHHHhhcCchHHHHHhhhcC-------CHHHHHHHHHHHHHhcC-CC-ccHHHHHHcCChHHHHHHhcc---------
Q 002091 496 --KASLLEGNVLGPLLHLVSRG-------DIQMKKVAVKALRNLSS-VP-QNGLQMIKEGAVGPLVDLLLH--------- 555 (968)
Q Consensus 496 --~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~Ls~-~~-~~~~~i~~~g~v~~Lv~lL~~--------- 555 (968)
.....+...++.+.++.-.. ++.+...+...+..+.. .+ +..+.++ ..+..+...
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQP 155 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCCc
Confidence 12222344778888766432 24555555666655553 23 3333332 233333220
Q ss_pred cCCCCcchHHHHHHHHHHhhc-CcccccCCCCccccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccC-CChhhHH
Q 002091 556 HSSSSSSLREETATAIMHLAV-STMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRS-PSAGNIK 632 (968)
Q Consensus 556 ~~~~~~~~~~~a~~~L~~La~-~~~~~~~~~~~~~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~-~~~~~~~ 632 (968)
............+..+..+.. -+... .+-.....+..++.+.. ..++..+..++.++..+... +.+....
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~-------~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~ 228 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDV-------SLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD 228 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCccc-------CccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH
Confidence 000000112222222222222 11111 11123345666666654 45678888888888888743 2222222
Q ss_pred HHHhhcCchHHHHHhh-ccCChhHHHHHHH----HHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHH
Q 002091 633 TTLTQCSAIPVLVQLC-EHDNENVRANAVK----LFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGIL 707 (968)
Q Consensus 633 ~~i~~~g~i~~Lv~ll-~~~~~~v~~~a~~----~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L 707 (968)
. .+..+..-. ...+...+..+.. +...|.-.+.+. ....+..|+.+|.+ .++...++..+
T Consensus 229 ~------~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~------~~~~~~~L~~lL~~---~~~g~~aA~~f 293 (415)
T PF12460_consen 229 E------FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL------ATELLDKLLELLSS---PELGQQAAKAF 293 (415)
T ss_pred H------HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch------HHHHHHHHHHHhCC---hhhHHHHHHHH
Confidence 1 223333333 2233344444444 444443222221 22356778887766 45667777777
Q ss_pred hcCCCC-HHh--------HHHHHHcCC----HHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCC
Q 002091 708 SKLPEV-PQF--------TQWLLDAGA----LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGV 774 (968)
Q Consensus 708 ~nL~~~-~~~--------~~~l~~~g~----l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~ 774 (968)
+-|..+ ++. .+.+....+ +|.+++..+. .+...+.+-..+|..+..+ -|...-.-.-..+
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~------~~~~~k~~yL~ALs~ll~~-vP~~vl~~~l~~L 366 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE------ADDEIKSNYLTALSHLLKN-VPKSVLLPELPTL 366 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh------cChhhHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 777663 333 333444443 4555555554 3334778888888888886 3322211122458
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHhhhcccC
Q 002091 775 IPKLVQLLEYGTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 775 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s 804 (968)
+|.|++-|...++.++..+..+|..+....
T Consensus 367 lPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 367 LPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998544
No 267
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.45 E-value=20 Score=39.09 Aligned_cols=166 Identities=18% Similarity=0.167 Sum_probs=100.2
Q ss_pred hHHHH-HHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCc--cHHHH
Q 002091 464 FKHLL-QRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQ--NGLQM 540 (968)
Q Consensus 464 v~~Lv-~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~--~~~~i 540 (968)
+..|+ ..+++.++.+|+.|...|+-.+.-+..- + ...++.+...++.++..++..|++++..+....+ .-...
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~---a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL---A-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH---H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 34444 5677888999999999998886655421 1 2346778888888899999999999999984221 11111
Q ss_pred -------HHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccc-hhHHHHHHHh-hc---cCC
Q 002091 541 -------IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLES-DKEIFMLFSL-IN---LTG 608 (968)
Q Consensus 541 -------~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~-~~~i~~l~~l-l~---~~~ 608 (968)
-....+..+.+.+.+.+ ++++..|+..++.|.-.+. +.. ...+..|+-+ .+ ..+
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~a~EGl~KLlL~~~-----------i~~~~~vL~~Lll~yF~p~t~~~ 169 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSEN---PELQAIAVEGLCKLLLSGR-----------ISDPPKVLSRLLLLYFNPSTEDN 169 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcCC-----------CCcHHHHHHHHHHHHcCcccCCc
Confidence 12345666777777664 7899999999999887553 333 3444444332 22 223
Q ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc
Q 002091 609 PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH 650 (968)
Q Consensus 609 ~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~ 650 (968)
+.++......+-..|.+ ....+..+.+ .+++.+..+.+.
T Consensus 170 ~~LrQ~L~~Ffp~y~~s--~~~~Q~~l~~-~f~~~l~~~~~~ 208 (298)
T PF12719_consen 170 QRLRQCLSVFFPVYASS--SPENQERLAE-AFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHH-HHHHHHHHHHhC
Confidence 44444444444444433 2223333333 345555555543
No 268
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=65 Score=36.80 Aligned_cols=255 Identities=15% Similarity=0.095 Sum_probs=124.5
Q ss_pred hhcCCHHHHHHHHHHHHHhcCC-CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcccc
Q 002091 512 VSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTL 590 (968)
Q Consensus 512 L~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~i 590 (968)
.++++...+..|+..|.|.+.. |.-+... ..-.+..++.-|.+... .++.-+++.+|..+...-.+....+. .
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~--~~V~leam~~Lt~v~~~~~~~~l~~~---~ 340 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLN--EEVQLEAMKCLTMVLEKASNDDLESY---L 340 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHhhhhcchhhh---c
Confidence 3456778899999999999975 3332222 22355666666665442 67888899888888764333321000 0
Q ss_pred ccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhh--cCchHHHHHhhccCChhHHHHHHHHHHHhcc
Q 002091 591 LESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQ--CSAIPVLVQLCEHDNENVRANAVKLFCCLVD 668 (968)
Q Consensus 591 l~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~ 668 (968)
-.+.-.+..+..+.+++.+.++...+..|+.... ...+..+.+ .+....++-.+.+.++.+-. ||+.....+
T Consensus 341 ---l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g-~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c- 414 (533)
T KOG2032|consen 341 ---LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG-GGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTC- 414 (533)
T ss_pred ---hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC-CCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhc-
Confidence 1122334556678888998887766666653211 111122221 11233344455566665554 444444443
Q ss_pred CCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhc-----CCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCc
Q 002091 669 DGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSK-----LPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPN 742 (968)
Q Consensus 669 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~n-----L~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~ 742 (968)
..+-.+++. .+.++...+ ....-.+.+.| |.. .++....... ....++++ +
T Consensus 415 -~p~l~rke~--~~~~q~~ld---------~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t-----~~~~~f~s------s 471 (533)
T KOG2032|consen 415 -YPNLVRKEL--YHLFQESLD---------TDMARFQAFYNQWCIQLNHIHPDILMLLLT-----EDQHIFSS------S 471 (533)
T ss_pred -CchhHHHHH--HHHHhhhhH---------HhHHHHHHHHHHHHHHHhhhCHHHHHHHHH-----hchhheec------c
Confidence 121111111 111221110 00001111111 122 2222222111 11112222 2
Q ss_pred hhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 743 RFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 743 ~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
-+.+++.+...-.++..+..++.....--.-....|-.+....-++++..|..|+..++
T Consensus 472 we~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 472 WEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 23556666555554444323344333333344556666666778899999999998776
No 269
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.31 E-value=3 Score=40.67 Aligned_cols=146 Identities=18% Similarity=0.146 Sum_probs=91.5
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCH
Q 002091 685 ETLVTIIQS-SHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNL 763 (968)
Q Consensus 685 ~~Lv~lL~~-~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~ 763 (968)
..++..|.. ..+++++..++-++..+-. ..++ -...-+-+.+-.++.. ...+-.-.++.++..+-.. .+
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~--~~~~-~~~~~~~~~i~~~~~~------~~~d~~i~~~~~l~~lfp~-~~ 75 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLD--AARE-EFKEKISDFIESLLDE------GEMDSLIIAFSALTALFPG-PP 75 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHCC------HHCCHHHHHHHHHHHHCTT-TH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHH--HhHH-HHHHHHHHHHHHHHcc------ccchhHHHHHHHHHHHhCC-CH
Confidence 344444443 3445577777777766632 1111 1111122334444444 2333456777777777766 66
Q ss_pred HHHHHH-HHcCChHHHHHHhh--cCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccc
Q 002091 764 EWQKRA-AEAGVIPKLVQLLE--YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESS 840 (968)
Q Consensus 764 ~~~~~~-~~~g~i~~Lv~lL~--~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~ 840 (968)
+....+ ...|.++.+..++. ..+..++..++.+|..-+ ..+..
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc----------------------------------~d~~~ 121 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC----------------------------------IDKSC 121 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT----------------------------------TSHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH----------------------------------ccHHH
Confidence 665554 47799999999999 678889998988887655 44455
Q ss_pred hHHhhcCChHHHHhhcc-CCChh-hhHHHHHHHHhh
Q 002091 841 FCLLEANAVRPLVRVLE-DPDHG-ACEASLDALVTL 874 (968)
Q Consensus 841 ~~l~~~g~i~~Lv~lL~-~~~~~-v~~~al~aL~~L 874 (968)
...+...+++-|-+++. ++|.. ++..|+-+|+.+
T Consensus 122 r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 122 RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 55677788999999995 55566 888888888754
No 270
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.07 E-value=0.43 Score=35.84 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=34.7
Q ss_pred cccccccCCCCceecCCchh-hhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 267 YCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 267 ~cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
-|-||.+---|-|+-.|||- .|-.|=.+-+..++..||+|+.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 48899998889999999987 666665554445788999998764
No 271
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=84.05 E-value=0.35 Score=37.90 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=26.3
Q ss_pred CCCCCCCCCcC-CCCC-CccCHhH-HHHHHHHHhhccccccccc
Q 002091 300 NNLCPLTMTVL-DTSI-LRPNKTL-RQSIEEWKDRNTMITIASM 340 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~-l~pn~~l-~~~I~~w~~~~~~~~~~~~ 340 (968)
..+||+|++++ +|.. -.-++++ |++|.+|...++...||.+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 57899999999 4433 3458999 9999999976666778864
No 272
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=83.82 E-value=1.1 Score=33.40 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=21.9
Q ss_pred ccccccCC--CCceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 268 CPITRDVM--VDPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 268 cpi~~~~m--~dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
||+|-+-| +|--.. +||+..||.|..+....++..||-++++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67888777 232223 57999999998888766778999998864
No 273
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.37 E-value=0.83 Score=49.89 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=40.8
Q ss_pred CCcccccccccCCCCce-----e---cCCchhhhHHHHHHHHhcC------CCCCCCCCCcCCC
Q 002091 263 LQSFYCPITRDVMVDPV-----E---TSSGQTFERSAIEKWFSDG------NNLCPLTMTVLDT 312 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv-----~---~~~g~t~~r~~i~~~~~~~------~~~CP~t~~~l~~ 312 (968)
-.+..|-||++.-.+++ - ..|-|+||-.||.+|-... ...||+|+.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 47899999999999998 3 4599999999999996422 3679999887654
No 274
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=83.31 E-value=46 Score=37.60 Aligned_cols=143 Identities=16% Similarity=0.224 Sum_probs=98.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhcCCC----CHHhHHHHHHcCCHHHHHHHhhcCCCCC-CchhHHHHHHHHHHhhcc
Q 002091 684 LETLVTIIQSSHNEEEIASAMGILSKLPE----VPQFTQWLLDAGALPIVLNFLKNGRQND-PNRFQVVENAVGALRRFT 758 (968)
Q Consensus 684 i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~----~~~~~~~l~~~g~l~~Lv~lL~~~~~~~-~~~~~v~e~a~~aL~~L~ 758 (968)
...+..++.. .+++.+-+|+-....++. +...++.+.++-|.+.+=+++.+++.++ .++.-.+.-++.+|..+|
T Consensus 13 ~~~~~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC 91 (698)
T KOG2611|consen 13 LDDCLKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC 91 (698)
T ss_pred hhhHHHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 3345555555 445677888888888877 3345667888989999999998865533 355667778888899888
Q ss_pred CCCCHHHHHHHHHcCChHHHHHHhhcC-ChH------HHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccC
Q 002091 759 APTNLEWQKRAAEAGVIPKLVQLLEYG-TTL------TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVH 831 (968)
Q Consensus 759 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~------v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h 831 (968)
. .++....-.--+.||.|..++..+ ++. +-..+-.+|..++...
T Consensus 92 ~--~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e--------------------------- 142 (698)
T KOG2611|consen 92 R--VPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE--------------------------- 142 (698)
T ss_pred C--ChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC---------------------------
Confidence 8 566543322235689999999854 333 6667777888777322
Q ss_pred CCccCcccchHHhhcCChHHHHhhccCCChh
Q 002091 832 GGLCGIESSFCLLEANAVRPLVRVLEDPDHG 862 (968)
Q Consensus 832 ~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~ 862 (968)
.....|+..|+++.+.++-.-.+..
T Consensus 143 ------~G~~~Lia~G~~~~~~Q~y~~~~~~ 167 (698)
T KOG2611|consen 143 ------AGLMTLIASGGLRVIAQMYELPDGS 167 (698)
T ss_pred ------chhHHHHhcCchHHHHHHHhCCCCc
Confidence 2345688899999999877655544
No 275
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=83.16 E-value=1.1 Score=44.91 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=45.9
Q ss_pred cccccccccCCCCcee-cCCchhhhHHHHHHHHhc-CCCCCCC--CCCcCCCCCCccCHhH--HHHHHHHHh
Q 002091 265 SFYCPITRDVMVDPVE-TSSGQTFERSAIEKWFSD-GNNLCPL--TMTVLDTSILRPNKTL--RQSIEEWKD 330 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~-~~~~CP~--t~~~l~~~~l~pn~~l--~~~I~~w~~ 330 (968)
+.+|||+.+...-|++ ..|.|-|||..|.+.++- -...||. |.+...-..+.-++-+ |..|...++
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~ 260 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRN 260 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHHh
Confidence 6799999999999988 479999999999999852 2356884 4455444444444443 555554443
No 276
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=82.57 E-value=7.1 Score=47.29 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=91.6
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhH
Q 002091 639 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFT 717 (968)
Q Consensus 639 g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~ 717 (968)
..+|.|++..+..+...+-.-..+|.+... +.+...-----+...|.|++.|.- .+..++..++.+|.-+.. .+...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~-~vP~~vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLT-NVPKQVLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHh-cCCHHhhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccc
Confidence 478899988886667777778888888763 333211111112456666666665 455677777777766554 22221
Q ss_pred HHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHH
Q 002091 718 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSL 797 (968)
Q Consensus 718 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL 797 (968)
.. .-.-.++.++.+=.+.+ .....+|+.|+.+|..|+.. -|...-.-.+..++..|...|.+..--+|.+|+.+=
T Consensus 945 t~-~~~Tlvp~lLsls~~~~---n~~~~VR~~ALqcL~aL~~~-~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 945 TE-HLSTLVPYLLSLSSDND---NNMMVVREDALQCLNALTRR-LPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred hH-HHhHHHHHHHhcCCCCC---cchhHHHHHHHHHHHHHhcc-CCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 11 11123455554433321 12378999999999999985 222222223445677888888776668888888764
Q ss_pred h
Q 002091 798 A 798 (968)
Q Consensus 798 ~ 798 (968)
.
T Consensus 1020 ~ 1020 (1030)
T KOG1967|consen 1020 Q 1020 (1030)
T ss_pred h
Confidence 3
No 277
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=82.32 E-value=0.36 Score=58.04 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=38.9
Q ss_pred ccccccccCCCCceecCCchhhhHHHHHHHHhcC-CCCCCCCCCcCCCC
Q 002091 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDG-NNLCPLTMTVLDTS 313 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~-~~~CP~t~~~l~~~ 313 (968)
+.|++|.+ -.+||++.|||-||+.|+.+.++.. ...||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 89999999 8899999999999999999976543 33699997666543
No 278
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=81.54 E-value=65 Score=32.76 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcC-----CHHHHHHHHHHHHHhccCchh--hHHHhhcCchHHHH
Q 002091 437 ASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG-----PESVKMRMATTLAEMELTDHH--KASLLEGNVLGPLL 509 (968)
Q Consensus 437 ~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~-----~~~~~~~aa~~L~~L~~~~~~--~~~i~~~g~i~~Lv 509 (968)
-..+|...|.-++.+++.|..+.++..--.+-..|... .+..|..+..++..|..+++. ...+....++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 34577888888889999999988876543444444332 246788899999999776643 33455688999999
Q ss_pred HhhhcCCHHHHHHHHHHHHHhcCCC
Q 002091 510 HLVSRGDIQMKKVAVKALRNLSSVP 534 (968)
Q Consensus 510 ~lL~~~~~~~~~~a~~aL~~Ls~~~ 534 (968)
+++..++.-.+..|+.++..+-.++
T Consensus 196 rIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccc
Confidence 9999888877888887777765433
No 279
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=81.49 E-value=1.2e+02 Score=37.41 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHh
Q 002091 475 PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLL 553 (968)
Q Consensus 475 ~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL 553 (968)
.+..--.+.+++...+.....-..+.. -.+...+..+. +..+.++..|++++..-+..... .-...+.++.|+++.
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl--~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL--LSLQPMILDGLLQLA 539 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCceec--cccchHHHHHHHHHc
Confidence 444444566666544332111111111 12233344443 33566777777777766621110 001234566677766
Q ss_pred cccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhh--ccCCHHHHHHHHHHHHHhccCCChhhH
Q 002091 554 LHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI--NLTGPNVQQRILQTFNALCRSPSAGNI 631 (968)
Q Consensus 554 ~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll--~~~~~~~~~~al~~L~~L~~~~~~~~~ 631 (968)
...+ .++....+.+|...+..+..... -.+....|.++.++ .+.+|.+...+-.++-.++.. ...
T Consensus 540 s~~s---~evl~llmE~Ls~vv~~dpef~a-------s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~---~~~ 606 (1005)
T KOG2274|consen 540 SKSS---DEVLVLLMEALSSVVKLDPEFAA-------SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI---AAN 606 (1005)
T ss_pred cccc---HHHHHHHHHHHHHHhccChhhhh-------hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HHh
Confidence 6544 55666666677776653322211 11223344444443 367887766666666666642 111
Q ss_pred HHHHhhcCchHHHHHhhccCC----hhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHH
Q 002091 632 KTTLTQCSAIPVLVQLCEHDN----ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGIL 707 (968)
Q Consensus 632 ~~~i~~~g~i~~Lv~ll~~~~----~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L 707 (968)
..-+.+ ..+|.|+..+...+ .....-++..|..+.+...+..-..++ .-+++.+.++.-+..+.+....+-.+|
T Consensus 607 ~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 607 YGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred hcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHH
Confidence 222232 36999999998765 556667777777776555544322222 346788888876667777888888888
Q ss_pred hcCCC
Q 002091 708 SKLPE 712 (968)
Q Consensus 708 ~nL~~ 712 (968)
..+..
T Consensus 685 ra~Is 689 (1005)
T KOG2274|consen 685 RALIS 689 (1005)
T ss_pred HHHHh
Confidence 88776
No 280
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.37 E-value=12 Score=46.63 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=108.4
Q ss_pred cChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhc-CCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHH
Q 002091 391 RRIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLL 468 (968)
Q Consensus 391 ~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv 468 (968)
++++.|.+|.-+|..+.. +.+++.. ..|.|...+. ++++.++.+++.++..++..-+|-.. -.-+.|-
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces------~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie----~~T~~Ly 1004 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCES------HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE----PWTEHLY 1004 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHH------HHHHHHHHHhcCCCceeeecchheccchhhhcccccc----hhhHHHH
Confidence 346677777777777765 6555543 4788999886 89999999999999998754444211 1124566
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHH
Q 002091 469 QRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGP 548 (968)
Q Consensus 469 ~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~ 548 (968)
+.|...++.+|..|.-+|.+|-.++..|. .|-++.+..+|.+++++++.-|-.....|+... | .+ .+.+|-
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n--~i--ynlLPd 1075 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-N--TI--YNLLPD 1075 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-c--ch--hhhchH
Confidence 77888899999999999999987776554 688999999999999999988887777776422 1 11 235677
Q ss_pred HHHHhcccC
Q 002091 549 LVDLLLHHS 557 (968)
Q Consensus 549 Lv~lL~~~~ 557 (968)
++.-|.+++
T Consensus 1076 il~~Ls~~~ 1084 (1251)
T KOG0414|consen 1076 ILSRLSNGN 1084 (1251)
T ss_pred HHHhhccCc
Confidence 777676553
No 281
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.30 E-value=0.88 Score=47.45 Aligned_cols=42 Identities=24% Similarity=0.589 Sum_probs=35.8
Q ss_pred cccccccccCCC---CceecCCchhhhHHHHHHHHhcC--CCCCCCC
Q 002091 265 SFYCPITRDVMV---DPVETSSGQTFERSAIEKWFSDG--NNLCPLT 306 (968)
Q Consensus 265 ~~~cpi~~~~m~---dpv~~~~g~t~~r~~i~~~~~~~--~~~CP~t 306 (968)
-|+||+..+.-. -||.++|||..-+.+...--++| .|.||.|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 499999999886 59999999999999998776666 3679988
No 282
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.21 E-value=27 Score=42.39 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=112.5
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHH
Q 002091 472 SAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLV 550 (968)
Q Consensus 472 ~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv 550 (968)
.++-..+|..+...|.++......+..+...+++...++.|++.++.+-.+|...+..||. ++ ...+|.|.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHH
Confidence 3344567888888888887655555666678999999999999999999999998888874 33 34567676
Q ss_pred HH-hcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcccccc--chhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCC
Q 002091 551 DL-LLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLE--SDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPS 627 (968)
Q Consensus 551 ~l-L~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~--~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~ 627 (968)
+. ........++.+-..-.++.+++..-- .++. .+-.+..++..++..+...+...+..|.+||.-..
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G---------el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALG---------ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhc---------cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 63 332221112334444466666553100 0111 11234556666766666668888899988885321
Q ss_pred hhhHHHHHhhcCchHHHHHhhccC-ChhHHHHHHHHHHHhccCCChh
Q 002091 628 AGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEA 673 (968)
Q Consensus 628 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~ 673 (968)
. .+...+.+ .+..++.+.+.+ +.-+|+.|+-.+..+- .+.+.
T Consensus 880 ~-~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL-~~tg~ 922 (982)
T KOG4653|consen 880 F-QVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELL-NGTGE 922 (982)
T ss_pred h-hhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHH-hccch
Confidence 1 11123332 355556666544 5788999999998887 55443
No 283
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=0.8 Score=49.25 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=39.9
Q ss_pred cccccccccCCCC---ceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 002091 265 SFYCPITRDVMVD---PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 265 ~~~cpi~~~~m~d---pv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~ 313 (968)
.+.|.|++++|-| |++.|.|++|--.+|+.|-...+-+||.++..+...
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 4778899999974 899999999999999999655447899998877543
No 284
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.12 E-value=25 Score=42.88 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=93.7
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh-h-cCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHH
Q 002091 462 NYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL-E-GNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGL 538 (968)
Q Consensus 462 g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~ 538 (968)
..+|.|++.....+...|.+=..+|.+.-.+- -+..+. + ....|.|++.|.-.|+.+|-.+..++.-+.. .+.-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 56777777777556666777667777763321 123333 2 5678888999988999999999988887764 222111
Q ss_pred HHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHH
Q 002091 539 QMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQT 618 (968)
Q Consensus 539 ~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~ 618 (968)
.=+ .-.||.++.+=.+.+..+..+++.|+.+|..|..--..+. -.-.....+..+...+++....+|+.|.++
T Consensus 946 ~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~------l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS------LLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc------cccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 111 2356666665554443346789999999999987221111 123345667777777776666677776664
No 285
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=79.99 E-value=2.3 Score=34.91 Aligned_cols=43 Identities=26% Similarity=0.543 Sum_probs=31.4
Q ss_pred cccccccCCC----Ccee-cCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 267 YCPITRDVMV----DPVE-TSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 267 ~cpi~~~~m~----dpv~-~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
.||-|..=|. =||+ --|.|.|--.||.+|++. ...||..+++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 3666665552 1333 358899999999999975 66999999875
No 286
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=78.38 E-value=59 Score=38.76 Aligned_cols=227 Identities=12% Similarity=0.124 Sum_probs=127.8
Q ss_pred hHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccC---CchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHH
Q 002091 411 TLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSF---SDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 487 (968)
Q Consensus 411 ~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~---~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~ 487 (968)
.+.+.|.. .-..|.|+..+..++ .....+..+..+.. ..+ ...+.++.|+++++..+..+|..-..-+-
T Consensus 284 ~~pe~i~~-~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~ 355 (690)
T KOG1243|consen 284 NFPEEIIA-SKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIE 355 (690)
T ss_pred hhhHHHHH-HHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc-----cccchhhhHHHHhcCcchHHHHHHHHhHH
Confidence 33344444 456777777776555 22233333333321 112 34567899999999988888754333332
Q ss_pred HhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHH
Q 002091 488 EMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREET 567 (968)
Q Consensus 488 ~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a 567 (968)
.. .+..-..+.+....|.+..-+.+.++.+++.++.++..|+..-..+ ......+..|-++=. ++...++.+.
T Consensus 356 ~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~---d~~~~irtnt 428 (690)
T KOG1243|consen 356 KY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQP---DEHGGIRTNT 428 (690)
T ss_pred HH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCc---cccCcccccc
Confidence 22 1222234566778899999999999999999999999987422211 111112222222221 2336788888
Q ss_pred HHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHh
Q 002091 568 ATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQL 647 (968)
Q Consensus 568 ~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~l 647 (968)
.-+|+.++..-.. ..+..-.+..+..-+.+.-+..+...+.++...+......++. ..++|.++.+
T Consensus 429 ticlgki~~~l~~---------~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va-----~kIlp~l~pl 494 (690)
T KOG1243|consen 429 TICLGKIAPHLAA---------SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVA-----NKILPSLVPL 494 (690)
T ss_pred eeeecccccccch---------hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhh-----hhcccccccc
Confidence 8888888764211 1111111222333333444456666777776665443333321 2467777777
Q ss_pred hccCChhHHHHHHHHHHHh
Q 002091 648 CEHDNENVRANAVKLFCCL 666 (968)
Q Consensus 648 l~~~~~~v~~~a~~~L~~L 666 (968)
.-+.+..++..|..++...
T Consensus 495 ~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 495 TVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred ccCcccchhhHHHHHHHHH
Confidence 7777777777777766554
No 287
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=78.14 E-value=4.3 Score=33.61 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccc
Q 002091 520 KKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 580 (968)
Q Consensus 520 ~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 580 (968)
.+.|++|+.++++.+.....+.+.++++.++++....+ ...++--|..+|+-++...++
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~--v~siRGT~fy~Lglis~T~~G 62 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP--VLSIRGTCFYVLGLISSTEEG 62 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC--ccchHHHHHHHHHHHhCCHHH
Confidence 57899999999998877777777899999999998655 377899999999999976544
No 288
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.42 E-value=1.5 Score=46.50 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCC
Q 002091 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~ 308 (968)
-++=.||||-.=--..|..||||.-|..||.+++-+ ...|-.|+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCkt 464 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKT 464 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecc
Confidence 478899999988888889999999999999999854 345555543
No 289
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=77.19 E-value=3.2 Score=41.74 Aligned_cols=81 Identities=14% Similarity=0.241 Sum_probs=62.6
Q ss_pred HHHHHHcCChHHHHHHhcccC------CCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHH
Q 002091 537 GLQMIKEGAVGPLVDLLLHHS------SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPN 610 (968)
Q Consensus 537 ~~~i~~~g~v~~Lv~lL~~~~------~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~ 610 (968)
...+++.||+..|+++|..-. .........++.+|..|.....+... ++...+.+..+...+.+.++.
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~------v~~~~~~v~~i~~~L~s~~~~ 173 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEA------VLSHPDSVNLIALSLDSPNIK 173 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHH------HHCSSSHHHHHHHT--TTSHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHH------HHcCcHHHHHHHHHHCCCCHH
Confidence 466778899999888876421 11245778899999999988777665 888889999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 002091 611 VQQRILQTFNALC 623 (968)
Q Consensus 611 ~~~~al~~L~~L~ 623 (968)
++..++..|..+|
T Consensus 174 ~r~~~leiL~~lc 186 (187)
T PF06371_consen 174 TRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998876
No 290
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.01 E-value=4.2 Score=46.31 Aligned_cols=85 Identities=16% Similarity=0.084 Sum_probs=65.4
Q ss_pred chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc-CChHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCF 820 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~ 820 (968)
.++++|..|+.+|+-+|.. +.+.++..+++|.. .++.+|...+.+|+-.+..++.
T Consensus 564 ~nDDVrRAAViAlGfvc~~----------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-------------- 619 (926)
T COG5116 564 GNDDVRRAAVIALGFVCCD----------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-------------- 619 (926)
T ss_pred CchHHHHHHHHheeeeEec----------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--------------
Confidence 4678999999999988875 34567777888874 4889999999999887743321
Q ss_pred CCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 821 SPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 821 ~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
.-+++.|-.|..+.+.-||..|+-|+.-++
T Consensus 620 -------------------------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 620 -------------------------KVATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred -------------------------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 124566667777888889999999998887
No 291
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.54 E-value=23 Score=40.64 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=95.2
Q ss_pred HHHhhccCCHHHHHHHHHHHH-HhccCCChhhHHHHHhhcCchHHHHHh-hccCChhHHHHHHHHHHHhccCCChhHHHH
Q 002091 600 LFSLINLTGPNVQQRILQTFN-ALCRSPSAGNIKTTLTQCSAIPVLVQL-CEHDNENVRANAVKLFCCLVDDGDEAIIRE 677 (968)
Q Consensus 600 l~~ll~~~~~~~~~~al~~L~-~L~~~~~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~ 677 (968)
+-+++.+.++.++.+-+.++. ..|.. +. .+++..|+.. ..+++++++++|+.+|...+ ..
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GT--gn--------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc-~~------- 582 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGT--GN--------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVC-CD------- 582 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcC--Cc--------chhHhhhheeecccCchHHHHHHHHheeeeE-ec-------
Confidence 345555666666665433332 12211 11 3567777776 56778999999999999887 22
Q ss_pred hhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhc
Q 002091 678 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRF 757 (968)
Q Consensus 678 ~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L 757 (968)
+...+...+++|..+.+..++...+-+|+--+...... -++..|-.++.+ +.+-+|..|+.+++-+
T Consensus 583 --D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D------~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 583 --DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYD------TNDFVRQSAMIAVGMI 648 (926)
T ss_pred --CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhC------cHHHHHHHHHHHHHHH
Confidence 23467777888888888888888777777665511111 124455566666 6778899999888877
Q ss_pred cCCCCHHHHHHHHHcCChHHHHHHhhcC
Q 002091 758 TAPTNLEWQKRAAEAGVIPKLVQLLEYG 785 (968)
Q Consensus 758 ~~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 785 (968)
....+++....+ .+++..+.+++.+.
T Consensus 649 l~Q~n~~Lnp~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 649 LMQCNPELNPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred HhhcCcccChhH--HHHHHHHHHHHhhh
Confidence 765455543333 23455555666544
No 292
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=76.34 E-value=0.62 Score=38.38 Aligned_cols=46 Identities=24% Similarity=0.537 Sum_probs=21.9
Q ss_pred cccccccccCCC-C---ceec----CCchhhhHHHHHHHHhc---CC-------CCCCCCCCcC
Q 002091 265 SFYCPITRDVMV-D---PVET----SSGQTFERSAIEKWFSD---GN-------NLCPLTMTVL 310 (968)
Q Consensus 265 ~~~cpi~~~~m~-d---pv~~----~~g~t~~r~~i~~~~~~---~~-------~~CP~t~~~l 310 (968)
+..|+||..... + |+++ .||++|=+.|+.+||.. +. .+||.|++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 567999998754 2 5543 47999999999999862 11 2499998876
No 293
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=76.17 E-value=1.8e+02 Score=34.96 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=94.0
Q ss_pred chHHHHHhhhcC----CHHHHHHHHHHHHHhcC----CCccHHHHHHcCChHHHHHHhcccC-CCCcchHHHHHHHHHHh
Q 002091 504 VLGPLLHLVSRG----DIQMKKVAVKALRNLSS----VPQNGLQMIKEGAVGPLVDLLLHHS-SSSSSLREETATAIMHL 574 (968)
Q Consensus 504 ~i~~Lv~lL~~~----~~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~~~a~~~L~~L 574 (968)
.+..+..+++++ .+.++..|+.++++|.. ..+.+...+....++.+.+.|.... ..+.+-+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 456777777653 55677777777777762 2222212222336677777665421 11133355577788887
Q ss_pred hcCcccccCCCCccccccchhHHHHHHHhhc---cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC
Q 002091 575 AVSTMYQESSQTPVTLLESDKEIFMLFSLIN---LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD 651 (968)
Q Consensus 575 a~~~~~~~~~~~~~~il~~~~~i~~l~~ll~---~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~ 651 (968)
.. ...+..+...+. ..++.++..|+++|..++.. .... +-+.|+.+..+.
T Consensus 474 g~-----------------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~-~p~~---------v~~~l~~i~~n~ 526 (574)
T smart00638 474 GH-----------------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR-DPRK---------VQEVLLPIYLNR 526 (574)
T ss_pred CC-----------------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh-CchH---------HHHHHHHHHcCC
Confidence 64 223444444443 33567899999999987632 1222 345566666554
Q ss_pred --ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHH
Q 002091 652 --NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIA 701 (968)
Q Consensus 652 --~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~ 701 (968)
+.++|..|+.+|...- .+ ...+..+...+....+.++..
T Consensus 527 ~e~~EvRiaA~~~lm~t~--P~---------~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 527 AEPPEVRMAAVLVLMETK--PS---------VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred CCChHHHHHHHHHHHhcC--CC---------HHHHHHHHHHHhhcCcHHHHH
Confidence 5789999988777652 22 245667777777766655543
No 294
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=76.08 E-value=47 Score=41.16 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=112.4
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhh-hcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHH
Q 002091 471 LSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLV-SRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGP 548 (968)
Q Consensus 471 L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~ 548 (968)
+.+.++.-|..|+..+................|.+..++... .+.+..+...|+.+|..|+. .... ..=...+..+.
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~ 340 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPS 340 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcch
Confidence 444456666666666655533222111111234444555544 34577888899999999884 2222 22223457788
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCCh
Q 002091 549 LVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSA 628 (968)
Q Consensus 549 Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~ 628 (968)
+++-+.+.. ..+++.++.++-.++.. ..-....+.+...+.+.+|.++..+...+....+..+.
T Consensus 341 lld~lkekk---~~l~d~l~~~~d~~~ns-------------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 341 LLDRLKEKK---SELRDALLKALDAILNS-------------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHhhhcc---HHHHHHHHHHHHHHHhc-------------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 888887665 67788777777776652 22245677888899999999999877777666543221
Q ss_pred -hhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 629 -GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 629 -~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
...+..+ .+.++.++....+.+.+||.+|..++..+.
T Consensus 405 ~~~~~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 405 KTVEKETV--KTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCcchhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 1112222 246788888888889999999999888776
No 295
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=75.98 E-value=2 Score=44.82 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=28.1
Q ss_pred CCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 282 SSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 282 ~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
+|||+.|-+|.-.-|..|...||.|+..+..
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 7999999999999999999999999887743
No 296
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.91 E-value=47 Score=40.40 Aligned_cols=213 Identities=14% Similarity=0.142 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCc
Q 002091 561 SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSA 640 (968)
Q Consensus 561 ~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~ 640 (968)
+.++..++.-|..+....... ..+..++.+...+.++.+.++-+--++++.+..||.- .+ ...
T Consensus 741 vpik~~gL~~l~~l~e~r~~~-------~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~---------e~i 803 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKA-------TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YP---------EDI 803 (982)
T ss_pred ccchHHHHHHHHHHHHhcchh-------hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cc---------hhh
Confidence 668888999999988744222 3566778889999999999999988999988888742 11 236
Q ss_pred hHHHHHhhccC----ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHH
Q 002091 641 IPVLVQLCEHD----NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQ 715 (968)
Q Consensus 641 i~~Lv~ll~~~----~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~ 715 (968)
+|.|.+.-.+. ..+.+..+-.++.++. ..-++......+ ..+...+..++. ++...+..+++.+++|+. ..-
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~-qa~Gel~~~y~~-~Li~tfl~gvre-pd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVA-QALGELVFKYKA-VLINTFLSGVRE-PDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHH-HHhccHHHHHHH-HHHHHHHHhcCC-chHHHHHhHHHHHHHHHHHHhh
Confidence 77777633222 1234444446666665 222222222211 233334444443 355568889999999886 221
Q ss_pred -hHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHH--HcCChHHHHHHhhcC-ChHHHH
Q 002091 716 -FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA--EAGVIPKLVQLLEYG-TTLTKE 791 (968)
Q Consensus 716 -~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~-~~~v~~ 791 (968)
....+ ..++..++.+.+.+ ....+|..|+..+..+-.+...+.-.... .......+....... +..++.
T Consensus 881 ~vsd~~--~ev~~~Il~l~~~d-----~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~kl 953 (982)
T KOG4653|consen 881 QVSDFF--HEVLQLILSLETTD-----GSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKL 953 (982)
T ss_pred hhhHHH--HHHHHHHHHHHccC-----CchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 11111 12344455555542 35678999999999888874444333221 223344445555544 446777
Q ss_pred HHHHHHhhh
Q 002091 792 HAATSLARF 800 (968)
Q Consensus 792 ~Aa~aL~nl 800 (968)
.|+.++..+
T Consensus 954 haql~leei 962 (982)
T KOG4653|consen 954 HAQLCLEEI 962 (982)
T ss_pred HHHHHHHHH
Confidence 787777655
No 297
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.39 E-value=86 Score=33.37 Aligned_cols=178 Identities=14% Similarity=0.153 Sum_probs=104.6
Q ss_pred CCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCC------CHHHHHHHHHcCChHHHHHHhhcCC----hHHHHHH
Q 002091 724 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT------NLEWQKRAAEAGVIPKLVQLLEYGT----TLTKEHA 793 (968)
Q Consensus 724 g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~------~~~~~~~~~~~g~i~~Lv~lL~~~~----~~v~~~A 793 (968)
|..+-+..++-.|-. +...-+.+...|..++... +.+.+-.+.=.+.+|.+..-+.+++ ......+
T Consensus 60 ~~f~Glq~Ll~KGL~----Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~ 135 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLR----SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEI 135 (262)
T ss_pred CCchhHHHHHhCccC----CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHH
Confidence 444445555544331 2234567777888777652 1212333333456777777777766 1345567
Q ss_pred HHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCC----hhhhHHHHH
Q 002091 794 ATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD----HGACEASLD 869 (968)
Q Consensus 794 a~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~----~~v~~~al~ 869 (968)
|..|+.++...+. ..+...+.....+. .+....++.
T Consensus 136 A~~La~~a~~~~~----------------------------------------~~La~il~~ya~~~fr~~~dfl~~v~~ 175 (262)
T PF14225_consen 136 AEALAQVAEAQGL----------------------------------------PNLARILSSYAKGRFRDKDDFLSQVVS 175 (262)
T ss_pred HHHHHHHHHhCCC----------------------------------------ccHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 7888888742211 12333333333221 223333344
Q ss_pred HHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhcccCCchhhH
Q 002091 870 ALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKS 949 (968)
Q Consensus 870 aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~ 949 (968)
.|..-..+. .+.+.+..+..++..+.+.++..++.+|..++..-+.+..++.+-..+|.+++++ +...
T Consensus 176 ~l~~~f~P~---------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t---~~~~ 243 (262)
T PF14225_consen 176 YLREAFFPD---------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQT---DLWM 243 (262)
T ss_pred HHHHHhCch---------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCC---ccHH
Confidence 444322111 2345567788888888899999999999999998887766666667889999887 4455
Q ss_pred HHHHHHHH
Q 002091 950 LSARVLAH 957 (968)
Q Consensus 950 ~A~~aL~~ 957 (968)
.|-.+|..
T Consensus 244 eAL~VLd~ 251 (262)
T PF14225_consen 244 EALEVLDE 251 (262)
T ss_pred HHHHHHHH
Confidence 55555543
No 298
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.12 E-value=0.69 Score=54.00 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=38.8
Q ss_pred CcccccccccCCCCceec---CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 002091 264 QSFYCPITRDVMVDPVET---SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~---~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~ 313 (968)
..=.||+|..-+.|-.+. .|||-||..||..|-.. ..+||+++..+..+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhee
Confidence 445689999888887764 58999999999999753 56999999887544
No 299
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.06 E-value=1.2 Score=36.20 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=30.9
Q ss_pred ccccccccCCCC-ceec-CCchhhhHHHHHHHHhc--CCCCCCCCCCcC
Q 002091 266 FYCPITRDVMVD-PVET-SSGQTFERSAIEKWFSD--GNNLCPLTMTVL 310 (968)
Q Consensus 266 ~~cpi~~~~m~d-pv~~-~~g~t~~r~~i~~~~~~--~~~~CP~t~~~l 310 (968)
=.||-|.-.=-| |.+. -|.|.|-+.||.+|+.. +...||.++|..
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 345555443332 4443 68899999999999973 346799999865
No 300
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.82 E-value=26 Score=39.78 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=92.8
Q ss_pred HcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc-CChHHHHHHHHHHhhh
Q 002091 722 DAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLARF 800 (968)
Q Consensus 722 ~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~nl 800 (968)
..|.+..++..+.... ..++..++..|+..|.|.+.+ -|+-....... .+..++.-|.+ .+.+|+.+|..+|..+
T Consensus 252 ~~~lL~s~~~~la~ka--~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKA--TDPSAKSRGMACRGLGNTASG-APDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred ccccHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4456655555554321 115668999999999999987 34433333222 34444444444 4679999999999888
Q ss_pred cccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh--ccc
Q 002091 801 SKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGE 878 (968)
Q Consensus 801 ~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~--~~~ 878 (968)
...-.+ .+ -.+.++ ++.-.+..+..+.+++++.++...+..|+ .+.
T Consensus 328 ~~~~~~--------~~----------------------l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 328 LEKASN--------DD----------------------LESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred HHhhhh--------cc----------------------hhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 732111 00 000011 23444667778899999999999888888 554
Q ss_pred ccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002091 879 RLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI 918 (968)
Q Consensus 879 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 918 (968)
.++..-..-+. +...++.-.+.+++|.+-.++-..+...
T Consensus 376 ~~e~~Fte~v~-k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 376 GWEEFFTEQVK-KRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred CchhhhHHHHH-hccccceeeeCCCChHHHHHHHHHHHhc
Confidence 44433222122 2334444455777887766655555433
No 301
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=74.49 E-value=1.5e+02 Score=34.72 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc------CChhHHHHHHHHHHHhccCCChhHHHHhhccc-
Q 002091 610 NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH------DNENVRANAVKLFCCLVDDGDEAIIREHVGQK- 682 (968)
Q Consensus 610 ~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~------~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~- 682 (968)
+..+.+..++.||+++..+.. ++..|..+|.+ .+..+.+.|+..+..+...........+--.-
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~---------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~ 300 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHS---------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPS 300 (464)
T ss_pred ccchhHHHHHHHHHcCccHHH---------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHH
Confidence 666678888888887654433 57778888832 24566778888888876222111111111112
Q ss_pred -cHHHHHHHhccC
Q 002091 683 -CLETLVTIIQSS 694 (968)
Q Consensus 683 -~i~~Lv~lL~~~ 694 (968)
.++.+...++..
T Consensus 301 ~vl~sl~~al~~~ 313 (464)
T PF11864_consen 301 SVLPSLLNALKSN 313 (464)
T ss_pred HHHHHHHHHHhCC
Confidence 566666666654
No 302
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.15 E-value=41 Score=39.76 Aligned_cols=210 Identities=13% Similarity=0.110 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHh-ccCchhhHHHhhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcCCC-ccHHHHHHcCChHHHHH
Q 002091 475 PESVKMRMATTLAEM-ELTDHHKASLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVP-QNGLQMIKEGAVGPLVD 551 (968)
Q Consensus 475 ~~~~~~~aa~~L~~L-~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~v~~Lv~ 551 (968)
+++.+..|--.|..+ +.+.+.+. .-.|.|+..+. .++|.+|.+|.-.|+.+..+- ...+. .-..|.+
T Consensus 909 d~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyr 978 (1128)
T COG5098 909 DEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYR 978 (1128)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHH
Confidence 577787777777776 44444333 35688888886 789999999999998887432 22111 2244566
Q ss_pred HhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhH
Q 002091 552 LLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNI 631 (968)
Q Consensus 552 lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~ 631 (968)
-|.+.+ ..++..|+.++..|--.+ .+.-.|-.+.+..++.+.+..+...|-..+..++.. ++.-
T Consensus 979 rL~De~---~~V~rtclmti~fLilag-----------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K-dNt~- 1042 (1128)
T COG5098 979 RLGDED---ADVRRTCLMTIHFLILAG-----------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK-DNTM- 1042 (1128)
T ss_pred Hhcchh---hHHHHHHHHHHHHHHHcc-----------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc-ccch-
Confidence 666554 678999999998887544 344456677778888888888888777777777653 2211
Q ss_pred HHHHhhcCchHHHHHhhccCChhH---HHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHh
Q 002091 632 KTTLTQCSAIPVLVQLCEHDNENV---RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILS 708 (968)
Q Consensus 632 ~~~i~~~g~i~~Lv~ll~~~~~~v---~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~ 708 (968)
-.|.+...-.+- ++...- -...++.|..+. +.+ ..++..-+.|+.-+..+.........+..+.
T Consensus 1043 -----yn~fidifs~ls-~~ae~g~e~fk~II~FLt~fI---~ke----rh~kql~E~L~~rl~rc~tq~qwd~~~~~l~ 1109 (1128)
T COG5098 1043 -----YNGFIDIFSTLS-SDAENGQEPFKLIIGFLTDFI---SKE----RHQKQLKESLFLRLLRCNTQSQWDKLLCSLF 1109 (1128)
T ss_pred -----hhhhHHHHHHcC-chhhcCCCcHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 124444333332 222111 122233333332 111 0112233444444444333344456677888
Q ss_pred cCCCCHHhHHHHHHc
Q 002091 709 KLPEVPQFTQWLLDA 723 (968)
Q Consensus 709 nL~~~~~~~~~l~~~ 723 (968)
||+...+....+++.
T Consensus 1110 nLp~k~~~~~~Ll~~ 1124 (1128)
T COG5098 1110 NLPDKIAGSGGLLNR 1124 (1128)
T ss_pred cCCccccchhhHhhc
Confidence 888833333444443
No 303
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=72.81 E-value=5.9 Score=40.68 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCHHhHHHHHHcCCH-------HHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 002091 699 EIASAMGILSKLPEVPQFTQWLLDAGAL-------PIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE 771 (968)
Q Consensus 699 ~~~~Al~~L~nL~~~~~~~~~l~~~g~l-------~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~ 771 (968)
-+.-|+.+|..|+-.+.+.+.++..+-. ..|+++|... .+...||-|+..|.+|+.+...-.+....+
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~-----e~~v~REfAvvlL~~La~~~~~~~r~iA~q 214 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR-----EDQVCREFAVVLLSNLAQGDEAAARAIAMQ 214 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc-----cchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 4677888888888766666666666543 4444445442 567899999999999999844445556668
Q ss_pred cCChHHHHHHhhcCChHH
Q 002091 772 AGVIPKLVQLLEYGTTLT 789 (968)
Q Consensus 772 ~g~i~~Lv~lL~~~~~~v 789 (968)
.+.|..|+.++.+.+...
T Consensus 215 ~~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 215 KPCISHLIAFIEDAEQNA 232 (257)
T ss_pred hchHHHHHHHHHHHHHHH
Confidence 899999999999775543
No 304
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=72.18 E-value=18 Score=36.14 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCChhHHHHhhccccHHHHHHHhccC--------CCHHHHHHHHHHHhcCCCCHHhHHHHHH-cCCHHHHHHHhhcCCCC
Q 002091 669 DGDEAIIREHVGQKCLETLVTIIQSS--------HNEEEIASAMGILSKLPEVPQFTQWLLD-AGALPIVLNFLKNGRQN 739 (968)
Q Consensus 669 ~~~~~~~~~~~~~~~i~~Lv~lL~~~--------~~~~~~~~Al~~L~nL~~~~~~~~~l~~-~g~l~~Lv~lL~~~~~~ 739 (968)
..+......+++.|++..|+.+|... .+.+....++.+|..|..+..+...++. .+++..|+..|.+
T Consensus 94 t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s---- 169 (187)
T PF06371_consen 94 TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS---- 169 (187)
T ss_dssp HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T----
T ss_pred cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC----
Confidence 34456778888889999999988543 3457788899999999997777777765 7788999999987
Q ss_pred CCchhHHHHHHHHHHhhcc
Q 002091 740 DPNRFQVVENAVGALRRFT 758 (968)
Q Consensus 740 ~~~~~~v~e~a~~aL~~L~ 758 (968)
++..++..++.+|..+|
T Consensus 170 --~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 --PNIKTRKLALEILAALC 186 (187)
T ss_dssp --TSHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHH
Confidence 66789999999888775
No 305
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=70.97 E-value=34 Score=38.62 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=81.0
Q ss_pred HHhhc-cccHHHHHHHhccCC--CHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhh-cCCCCCCchhHHHHHH
Q 002091 676 REHVG-QKCLETLVTIIQSSH--NEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK-NGRQNDPNRFQVVENA 750 (968)
Q Consensus 676 ~~~~~-~~~i~~Lv~lL~~~~--~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~-~~~~~~~~~~~v~e~a 750 (968)
..+++ ......|..++.+.. ...+...|+.++..+.. +|..-..+.++|.++.+++.+. .+-. ++.++....
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~---~s~e~l~~l 175 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL---PSSEVLTSL 175 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC---CcHHHHHHH
Confidence 33444 334555666666543 45678889999999988 8888889999999999999998 5332 456677777
Q ss_pred HHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC
Q 002091 751 VGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG 785 (968)
Q Consensus 751 ~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 785 (968)
-.+|..||- |..-.+.+.+.+.++.+++++.+.
T Consensus 176 P~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 176 PNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCH
Confidence 788898998 788899999999999999988754
No 306
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.73 E-value=2.2 Score=32.69 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=34.7
Q ss_pred cccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 002091 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~ 313 (968)
+..|=.|...=...++++|||-.++.|..-+ ...-||.|+.+++.-
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 3446667777788999999999999884332 346799999998653
No 307
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=70.40 E-value=28 Score=43.04 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=111.5
Q ss_pred chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHH---HHHhh-cCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKL---VQLLE-YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGF 817 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~L---v~lL~-~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~ 817 (968)
.+..-|..|+..+...... +. .-...+....+ .+... +.+..+...|+..|..++...+..
T Consensus 265 ~~WK~R~Eale~l~~~l~e--~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~---------- 329 (815)
T KOG1820|consen 265 KKWKDRKEALEELVAILEE--AK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL---------- 329 (815)
T ss_pred cchHHHHHHHHHHHHHHhc--cc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh----------
Confidence 4555566776666665552 22 11122333333 33322 346678888888888887533221
Q ss_pred cccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHH
Q 002091 818 WCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMV 897 (968)
Q Consensus 818 ~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~ 897 (968)
+.=...++.+.+++-+.+....+++.+..++-...... .-....+.+.
T Consensus 330 -----------------------~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~---------~l~~~~~~I~ 377 (815)
T KOG1820|consen 330 -----------------------FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST---------PLSKMSEAIL 377 (815)
T ss_pred -----------------------hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---------cHHHHHHHHH
Confidence 11123357788888888888888888888777776211 1233467788
Q ss_pred HHhcCCChHHHHHHHHHHHHHhcChhhH---HHhcccCCchhhhhcccCCchhhHHHHHHHHHHhhcc
Q 002091 898 RFLSSPSPKLQEKALDSVERIFRLPEFK---QKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQ 962 (968)
Q Consensus 898 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~~ 962 (968)
..+.+++|.++..+...+.+.++..+-. ...-....++++....+.+.++|..|..++..+-+..
T Consensus 378 e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 378 EALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998888654411 1111123567888888899999999988888765543
No 308
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.71 E-value=1e+02 Score=35.98 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=70.4
Q ss_pred CCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhccc
Q 002091 724 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKN 803 (968)
Q Consensus 724 g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~ 803 (968)
|.+..++..+.+ ++..+|..++.+|..+... -.+ .....-.|.+..|.+-+-+..+.||..|..+|+.+-..
T Consensus 91 ~~~~h~lRg~es------kdk~VR~r~lqila~~~d~-v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 91 GTFYHLLRGTES------KDKKVRKRSLQILALLSDV-VRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred HHHHHHHhcccC------cchhHHHHHHHHHHHHHHh-cch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 445555555555 6788999999999988864 112 12333456667777777777889999999999998643
Q ss_pred CCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhcc-CCChhhhHHHHHHHHhhh-cc
Q 002091 804 SLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE-DPDHGACEASLDALVTLI-EG 877 (968)
Q Consensus 804 s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~~L~-~~ 877 (968)
+.+ -+......|+.+++ ++..+||.. ||.|+. +.
T Consensus 163 ~~n-------------------------------------een~~~n~l~~~vqnDPS~EVRr~---allni~vdn 198 (885)
T COG5218 163 ELN-------------------------------------EENRIVNLLKDIVQNDPSDEVRRL---ALLNISVDN 198 (885)
T ss_pred cCC-------------------------------------hHHHHHHHHHHHHhcCcHHHHHHH---HHHHeeeCC
Confidence 322 12234567777777 456678874 567777 44
No 309
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.24 E-value=33 Score=36.73 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=85.8
Q ss_pred hHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHH
Q 002091 381 AVESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQM 458 (968)
Q Consensus 381 ~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i 458 (968)
++...++.|++ +++....++..|+.|+. +++...... .-.|..++.-+++....+-..|+.++..+...-.+...-
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445543 45666677777777776 444333222 245777888888888888888888888886444443322
Q ss_pred HhCCchHHHHHHH-h---cCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHh
Q 002091 459 AKANYFKHLLQRL-S---AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNL 530 (968)
Q Consensus 459 ~~~g~v~~Lv~~L-~---~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 530 (968)
.++.++..| . ..+.-+++.|-.+|..+...-.- .-+++.|+..+++.++.++..++.+..+.
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 233344333 2 23466888888888877533221 12456777778888888888887766554
No 310
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=66.74 E-value=1.3e+02 Score=35.11 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=82.7
Q ss_pred CchHHHHHhhccCC-hhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-CCHHHHHHHHHHHhcCCCCHHh
Q 002091 639 SAIPVLVQLCEHDN-ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLPEVPQF 716 (968)
Q Consensus 639 g~i~~Lv~ll~~~~-~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~~Al~~L~nL~~~~~~ 716 (968)
+.+..++.++...+ +.....++.++-.+...+. +-.+.++.++..|-+. ...+....+-.++.||..+...
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~-------iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g 248 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYGD-------IPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG 248 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc-------CChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccH
Confidence 34556666665443 3344555555555542221 1123344444444322 1124556677788888763333
Q ss_pred HHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc--CChHHHHHHhhcCChHHHHHHH
Q 002091 717 TQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA--GVIPKLVQLLEYGTTLTKEHAA 794 (968)
Q Consensus 717 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~--g~i~~Lv~lL~~~~~~v~~~Aa 794 (968)
.. ++..|..+|.+.+.....+..+..+|+..+..+..+..++....+.-. -++|.+...++.+++.+-....
T Consensus 249 ~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl 322 (464)
T PF11864_consen 249 HS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEIL 322 (464)
T ss_pred HH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHH
Confidence 22 356778888544443345566777999999888876211211122111 3688888888877776666666
Q ss_pred HHHhhhc
Q 002091 795 TSLARFS 801 (968)
Q Consensus 795 ~aL~nl~ 801 (968)
..+.++.
T Consensus 323 ~~i~~ll 329 (464)
T PF11864_consen 323 LLINRLL 329 (464)
T ss_pred HHHHHHH
Confidence 6666665
No 311
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.55 E-value=2.7e+02 Score=32.96 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=53.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhHH----HHHHHHH
Q 002091 37 LIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCR----AIVKRLK 112 (968)
Q Consensus 37 ~~~~~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~~~Sklyll~~~~----~~~~~~~ 112 (968)
.-.+++-++..+++++|.-=++||...++.. +-...|.+-+.-|..+..|.+.|++. |-++.++ .+...+.
T Consensus 174 ~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~--gE~e~L~~e~~rLsn~ekl~~~~~~a---~~~L~ge~~~~~~~~~l~ 248 (557)
T COG0497 174 EDLQEKERERAQRADLLQFQLEELEELNLQP--GEDEELEEERKRLSNSEKLAEAIQNA---LELLSGEDDTVSALSLLG 248 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHhhHHHHHHHHHHH---HHHHhCCCCchhHHHHHH
Confidence 3446677899999999999999998776532 33577888888888888888887543 4555432 3555555
Q ss_pred HHHHHHH
Q 002091 113 DTAREIS 119 (968)
Q Consensus 113 ~~~~~~~ 119 (968)
.....+.
T Consensus 249 ~a~~~l~ 255 (557)
T COG0497 249 RALEALE 255 (557)
T ss_pred HHHHHHH
Confidence 4444443
No 312
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=65.38 E-value=70 Score=38.61 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=81.1
Q ss_pred chHHHHHhhccC----ChhHHHHHHHHHHHhccCCC--hhHHHHhhccccHHHHHHHhcc---CCCHHHHHHHHHHHhcC
Q 002091 640 AIPVLVQLCEHD----NENVRANAVKLFCCLVDDGD--EAIIREHVGQKCLETLVTIIQS---SHNEEEIASAMGILSKL 710 (968)
Q Consensus 640 ~i~~Lv~ll~~~----~~~v~~~a~~~L~~Ls~~~~--~~~~~~~~~~~~i~~Lv~lL~~---~~~~~~~~~Al~~L~nL 710 (968)
.+..+..+++++ ...++..|+.++.++..... .......+....++.|...|.. ..+.+.+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 466677777654 45677777777777762111 1000011112345555555543 23455667788999998
Q ss_pred CCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc--CChH
Q 002091 711 PEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY--GTTL 788 (968)
Q Consensus 711 ~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~ 788 (968)
... ..++.+..++.. . ...+..+|..|+++|.+++....... -+.|..+..+ .+++
T Consensus 474 g~~----------~~i~~l~~~l~~-~--~~~~~~iR~~Av~Alr~~a~~~p~~v---------~~~l~~i~~n~~e~~E 531 (574)
T smart00638 474 GHP----------SSIKVLEPYLEG-A--EPLSTFIRLAAILALRNLAKRDPRKV---------QEVLLPIYLNRAEPPE 531 (574)
T ss_pred CCh----------hHHHHHHHhcCC-C--CCCCHHHHHHHHHHHHHHHHhCchHH---------HHHHHHHHcCCCCChH
Confidence 862 123444455542 1 11456799999999998875412222 3445555654 3679
Q ss_pred HHHHHHHHHhhh
Q 002091 789 TKEHAATSLARF 800 (968)
Q Consensus 789 v~~~Aa~aL~nl 800 (968)
+|..|..+|...
T Consensus 532 vRiaA~~~lm~t 543 (574)
T smart00638 532 VRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHhc
Confidence 999998888665
No 313
>PF04641 Rtf2: Rtf2 RING-finger
Probab=65.26 E-value=6 Score=42.16 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=31.1
Q ss_pred CcccccccccCCCCceecC-CchhhhHHHHHHHHhc
Q 002091 264 QSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSD 298 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~ 298 (968)
..+.|+||++.+.+||+.. -|+-|++..|-+|+-.
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 4789999999999999764 6999999999999854
No 314
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=65.07 E-value=70 Score=35.43 Aligned_cols=160 Identities=13% Similarity=0.223 Sum_probs=111.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCc-hHHHHHhhccC----C---------hhHHHHHHHH
Q 002091 597 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSA-IPVLVQLCEHD----N---------ENVRANAVKL 662 (968)
Q Consensus 597 i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~-i~~Lv~ll~~~----~---------~~v~~~a~~~ 662 (968)
+..+...+++..+.+...+++.|..++...++...+.++...+. .+.+-+++... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 56677777778888888999999999986666777777776554 35566666321 1 2888899987
Q ss_pred HHHhccCCChhHHHHhhcc-ccHHHHHHHhccCCCHHHHHHHHHHHhc-CCC----CHHhHHHHHHcCCHHHHHHHhhcC
Q 002091 663 FCCLVDDGDEAIIREHVGQ-KCLETLVTIIQSSHNEEEIASAMGILSK-LPE----VPQFTQWLLDAGALPIVLNFLKNG 736 (968)
Q Consensus 663 L~~Ls~~~~~~~~~~~~~~-~~i~~Lv~lL~~~~~~~~~~~Al~~L~n-L~~----~~~~~~~l~~~g~l~~Lv~lL~~~ 736 (968)
+..+...+++..+..+++. +.+..+.+-|.. ++.++....+.+|.. +.. ....+-.+.+...+..|..+....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 7766657777777777655 567788888877 566777777877763 333 344455566777888888866653
Q ss_pred CCCCCchhHHHHHHHHHHhhccC
Q 002091 737 RQNDPNRFQVVENAVGALRRFTA 759 (968)
Q Consensus 737 ~~~~~~~~~v~e~a~~aL~~L~~ 759 (968)
.. .....+.+.+-..|..+|.
T Consensus 217 ~~--~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 217 GE--DEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CC--cccchHHHHHHHHHHHHhc
Confidence 21 1234677777777877776
No 315
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=65.02 E-value=5.1 Score=42.31 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=33.5
Q ss_pred ccccccCCC--Cc--eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 002091 268 CPITRDVMV--DP--VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 268 cpi~~~~m~--dp--v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~ 313 (968)
||+|.+-|- |- .--+||+..||.|....-+.=+..||-|+...+..
T Consensus 17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 999999985 22 22568999999996654333356899999877553
No 316
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=65.01 E-value=2.8 Score=50.32 Aligned_cols=44 Identities=27% Similarity=0.641 Sum_probs=32.8
Q ss_pred cccccccCCC--C---cee--cCCchhhhHHHHHHHHhc-CCCCCCCCCCcC
Q 002091 267 YCPITRDVMV--D---PVE--TSSGQTFERSAIEKWFSD-GNNLCPLTMTVL 310 (968)
Q Consensus 267 ~cpi~~~~m~--d---pv~--~~~g~t~~r~~i~~~~~~-~~~~CP~t~~~l 310 (968)
-|+||--++. | |-- ..|.|.|--+|+-+||.. ++.+||.|+..+
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 4999988865 2 211 236688999999999974 678999998654
No 317
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=64.95 E-value=37 Score=41.38 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=82.3
Q ss_pred chHHHHHhhcc----CChhHHHHHHHHHHHhccCCChh--------HHHHhhccccHHHHHHHhc---cCCCHHHHHHHH
Q 002091 640 AIPVLVQLCEH----DNENVRANAVKLFCCLVDDGDEA--------IIREHVGQKCLETLVTIIQ---SSHNEEEIASAM 704 (968)
Q Consensus 640 ~i~~Lv~ll~~----~~~~v~~~a~~~L~~Ls~~~~~~--------~~~~~~~~~~i~~Lv~lL~---~~~~~~~~~~Al 704 (968)
.+..+..+++. .++.++..|+.++..|....... .....+....++.|...|. ...+.+.+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 45556666654 34667777887777776211111 1111223346666776666 335667788899
Q ss_pred HHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc
Q 002091 705 GILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY 784 (968)
Q Consensus 705 ~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~ 784 (968)
.+|+|+.. ...++.+..++.... .....+|-.|+++|.++... .++. +.+.|..++.+
T Consensus 512 kaLgN~g~----------~~~i~~l~~~i~~~~---~~~~~~R~~Ai~Alr~~~~~-~~~~--------v~~~l~~I~~n 569 (618)
T PF01347_consen 512 KALGNLGH----------PESIPVLLPYIEGKE---EVPHFIRVAAIQALRRLAKH-CPEK--------VREILLPIFMN 569 (618)
T ss_dssp HHHHHHT-----------GGGHHHHHTTSTTSS----S-HHHHHHHHHTTTTGGGT--HHH--------HHHHHHHHHH-
T ss_pred HHhhccCC----------chhhHHHHhHhhhcc---ccchHHHHHHHHHHHHHhhc-CcHH--------HHHHHHHHhcC
Confidence 99999764 234666777776642 14678999999999988765 3322 23456666664
Q ss_pred C--ChHHHHHHHHHHhhh
Q 002091 785 G--TTLTKEHAATSLARF 800 (968)
Q Consensus 785 ~--~~~v~~~Aa~aL~nl 800 (968)
. ++++|.+|...|...
T Consensus 570 ~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 570 TTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp TTS-HHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHhc
Confidence 3 668999998888764
No 318
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=63.84 E-value=1e+02 Score=36.53 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=87.4
Q ss_pred cchHHHHHHHHHHhhcCcccccCCCCcccccc---chhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhh
Q 002091 561 SSLREETATAIMHLAVSTMYQESSQTPVTLLE---SDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQ 637 (968)
Q Consensus 561 ~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~---~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~ 637 (968)
.+++..|+.+|+.+..+...... ... ....+..++..++ .++..+-.++++|.|+..++.+.+.-..-.+
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~------~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSL------FCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLE 630 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhh------hhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 55666777777776654432221 111 1123334444444 5677778899999999876555442211111
Q ss_pred cCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhcc----CCCHHHHHHHHHHHhcCCCC
Q 002091 638 CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS----SHNEEEIASAMGILSKLPEV 713 (968)
Q Consensus 638 ~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~----~~~~~~~~~Al~~L~nL~~~ 713 (968)
..+..+...-..++..++........|++-. .++..-+.+..+.|...+.. ..+-+-...++.+|++|+..
T Consensus 631 -~i~~~~~~~~s~~~knl~ia~atlaln~sv~----l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 631 -SILDPVIEASSLSNKNLQIALATLALNYSVL----LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred -HHhhhhhhhhcccchhHHHHHHHHHHHHHHH----HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 1222223332334566666666555555411 11111123444444444432 23334456677888999986
Q ss_pred HHhHHHHHHcCCHHHHHHHhhc
Q 002091 714 PQFTQWLLDAGALPIVLNFLKN 735 (968)
Q Consensus 714 ~~~~~~l~~~g~l~~Lv~lL~~ 735 (968)
+.....+...-.+..++.-+++
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHH
Confidence 6666667776777888877776
No 319
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=63.27 E-value=21 Score=31.24 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=51.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhcc
Q 002091 597 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVD 668 (968)
Q Consensus 597 i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~ 668 (968)
....+..+.+..+-+|.+++..|..|....+ .......+++..+...++++++-+--+|++.|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3444555667777899999999999987654 1122234567788889999999999999999999983
No 320
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=63.21 E-value=2.8e+02 Score=31.79 Aligned_cols=141 Identities=11% Similarity=0.183 Sum_probs=79.8
Q ss_pred chHHHHHhhcc-CChhHHHHHHHHHHHhccCCChhHHHHhhc--cccHHHHHHHhccCCCHHHHHHHH-HHHhcCCC-CH
Q 002091 640 AIPVLVQLCEH-DNENVRANAVKLFCCLVDDGDEAIIREHVG--QKCLETLVTIIQSSHNEEEIASAM-GILSKLPE-VP 714 (968)
Q Consensus 640 ~i~~Lv~ll~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~--~~~i~~Lv~lL~~~~~~~~~~~Al-~~L~nL~~-~~ 714 (968)
.+..+++.+.. .++..+.-|+++|..+... .+. .+.+ .-++.++++.-...++. +...|. .++.-++. .+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~-Q~~---~l~DstE~ai~K~Leaa~ds~~~-v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTN-QPA---RLFDSTEIAICKVLEAAKDSQDE-VMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHh-chH---hhhchHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHhhCc
Confidence 46667777776 6788899999999998732 221 1111 12445555554444443 333333 33444444 33
Q ss_pred HhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHH-HHHHHHHcCChHHHHHHhhcCChHHHHHH
Q 002091 715 QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE-WQKRAAEAGVIPKLVQLLEYGTTLTKEHA 793 (968)
Q Consensus 715 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~v~~~A 793 (968)
..+ +..+..++.+ .+...--.++..+-.+......+ .-.. -..+.|.+++-..+.+..+|+.|
T Consensus 405 ~~~--------I~~i~~~Ilt------~D~~~~~~~iKm~Tkl~e~l~~EeL~~l--l~diaP~~iqay~S~SS~VRKta 468 (516)
T KOG2956|consen 405 LQC--------IVNISPLILT------ADEPRAVAVIKMLTKLFERLSAEELLNL--LPDIAPCVIQAYDSTSSTVRKTA 468 (516)
T ss_pred hhH--------HHHHhhHHhc------CcchHHHHHHHHHHHHHhhcCHHHHHHh--hhhhhhHHHHHhcCchHHhhhhH
Confidence 221 2333444444 12233334444555555442222 2112 24688999999999999999999
Q ss_pred HHHHhhhc
Q 002091 794 ATSLARFS 801 (968)
Q Consensus 794 a~aL~nl~ 801 (968)
..+|-.+.
T Consensus 469 VfCLVamv 476 (516)
T KOG2956|consen 469 VFCLVAMV 476 (516)
T ss_pred HHhHHHHH
Confidence 99998886
No 321
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=62.84 E-value=19 Score=37.09 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhCCchHH---HH----HHHh-cCCHHHHHHHHHHHHHhccCchhhH-HHh-hcCch
Q 002091 436 QASRDAQELLENLSFSDDNVVQMAKANYFKH---LL----QRLS-AGPESVKMRMATTLAEMELTDHHKA-SLL-EGNVL 505 (968)
Q Consensus 436 ~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~---Lv----~~L~-~~~~~~~~~aa~~L~~L~~~~~~~~-~i~-~~g~i 505 (968)
.-|.-|+++|..|+..+.|...+...+-... |+ ++|. .++...|+-|..+|.+|+..++.-. .++ +.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3478899999999999999888876654333 33 3333 3478899999999999987665433 344 48899
Q ss_pred HHHHHhhhcC
Q 002091 506 GPLLHLVSRG 515 (968)
Q Consensus 506 ~~Lv~lL~~~ 515 (968)
..|+..+.+.
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 322
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=62.38 E-value=9.3 Score=31.51 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=22.9
Q ss_pred CcccccccccCC-----CCceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 002091 264 QSFYCPITRDVM-----VDPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 264 ~~~~cpi~~~~m-----~dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~ 313 (968)
..-+|.||++=. -+|.++ .||.-.||.|.+-=.+.|+..||+|+.+....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 344788998744 255554 47888899999977778999999999776543
No 323
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=61.89 E-value=20 Score=38.41 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=88.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCC--chHHHHHHHhc----CCHHHHHHHHHHHHHhccCchhhHH
Q 002091 425 LLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKAN--YFKHLLQRLSA----GPESVKMRMATTLAEMELTDHHKAS 498 (968)
Q Consensus 425 ~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g--~v~~Lv~~L~~----~~~~~~~~aa~~L~~L~~~~~~~~~ 498 (968)
.+...+..-..+.+--++..++-+..++..-..+...+ ....+...+.. .++..+.-+++++.|+..+...+..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 33444433323334445555555555655544444332 23444444433 3678888999999999888887776
Q ss_pred Hhh-cC-chHHHHHhhhcC----CHHHHHHHHHHHHHhcCCC-ccH-HHHHHcCChHHHHHHhcccCCCCcchHHHHHHH
Q 002091 499 LLE-GN-VLGPLLHLVSRG----DIQMKKVAVKALRNLSSVP-QNG-LQMIKEGAVGPLVDLLLHHSSSSSSLREETATA 570 (968)
Q Consensus 499 i~~-~g-~i~~Lv~lL~~~----~~~~~~~a~~aL~~Ls~~~-~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~ 570 (968)
+.+ .+ .+...+..+... +..++..++..+.|++..- .++ ..-.....+..+++.+..... +++....++.+
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~-d~Ea~~R~LvA 225 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREES-DEEALYRLLVA 225 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHT-SHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccC-CHHHHHHHHHH
Confidence 665 33 454555444443 6889999999999998411 111 111111234555554332211 27889999999
Q ss_pred HHHhhcCc
Q 002091 571 IMHLAVST 578 (968)
Q Consensus 571 L~~La~~~ 578 (968)
|++|...+
T Consensus 226 lGtL~~~~ 233 (268)
T PF08324_consen 226 LGTLLSSS 233 (268)
T ss_dssp HHHHHCCS
T ss_pred HHHHhccC
Confidence 99998543
No 324
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=60.98 E-value=4.1 Score=48.20 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=51.7
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHH--hcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHH
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWF--SDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWK 329 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~--~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~ 329 (968)
.++.||||.....+|+.+.|-|-||+.|+-.-| ..+...||+|+...+.....-.....+++++..
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~l 87 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKESL 87 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHhc
Confidence 467799999999999999999999999998744 345678999986666555555566677777543
No 325
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=60.87 E-value=1.6e+02 Score=32.53 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=109.5
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhcCCC--CHHhHHHHHHc-C-CHHHHHHHhhcCCCCCCch-------hHHHHHHHH
Q 002091 684 LETLVTIIQSSHNEEEIASAMGILSKLPE--VPQFTQWLLDA-G-ALPIVLNFLKNGRQNDPNR-------FQVVENAVG 752 (968)
Q Consensus 684 i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~--~~~~~~~l~~~-g-~l~~Lv~lL~~~~~~~~~~-------~~v~e~a~~ 752 (968)
+..+.+.|.+.. ..+..++++.|..++. +....+.+.+. + -.+.+..++.......... .++|...+.
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 556666676643 5577799999999988 43555555543 2 2356677765422111011 289999999
Q ss_pred HHhhccCCCCHHHHHHHH-HcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccC
Q 002091 753 ALRRFTAPTNLEWQKRAA-EAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVH 831 (968)
Q Consensus 753 aL~~L~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h 831 (968)
.+..+...+++..+..+. +.+.+..+.+-|..+++++-......|..-......+.+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------------------- 195 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------------------- 195 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh---------------------
Confidence 888888776787777766 4567888888888878888888888888655433332221
Q ss_pred CCccCcccchHHhhcCChHHHHhhccCCCh----hhhHHHHHHHHhhh-cc
Q 002091 832 GGLCGIESSFCLLEANAVRPLVRVLEDPDH----GACEASLDALVTLI-EG 877 (968)
Q Consensus 832 ~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~----~v~~~al~aL~~L~-~~ 877 (968)
....+....++..|+.+....++ .+++.+-.-|..++ ++
T Consensus 196 -------~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 196 -------TKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred -------hhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 12234556688889998877666 67777777777777 44
No 326
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=60.00 E-value=26 Score=33.44 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=59.9
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCC
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP 711 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~ 711 (968)
++..|..-+.++++.++..|+.+|-.++.++......++...+.+..|++++....+..++..++.++.+-+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 677788888889999999999999999977777777788888899999999987667788888887775544
No 327
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.45 E-value=56 Score=42.37 Aligned_cols=140 Identities=11% Similarity=0.194 Sum_probs=86.7
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHH
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQ 718 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~ 718 (968)
.+..++..+..+...+|..|.++|..+.+..+.-.....+..++..++. ++...++++|+..++...- .++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~-----DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN-----DSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc-----cchhHHHHHHHHHHhhhhhccHHHHH
Confidence 5777888888888999999999999998433221111122223333322 2466799999999997655 555433
Q ss_pred HHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc--CCh-HHHHHHHH
Q 002091 719 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY--GTT-LTKEHAAT 795 (968)
Q Consensus 719 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~-~v~~~Aa~ 795 (968)
.. ...+.+-+.+ +...||+.++.+++.+|.. .|+.... ...+.+++.. ++. .+++.+..
T Consensus 892 qy-----Y~~i~erIlD------tgvsVRKRvIKIlrdic~e-~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~e 953 (1692)
T KOG1020|consen 892 QY-----YDQIIERILD------TGVSVRKRVIKILRDICEE-TPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRE 953 (1692)
T ss_pred HH-----HHHHHhhcCC------CchhHHHHHHHHHHHHHHh-CCChhhH------HHHHHHHHHHhccchhHHHHHHHH
Confidence 33 2334444444 4577899999999999986 5554322 2344444442 222 37777777
Q ss_pred HHhhhcc
Q 002091 796 SLARFSK 802 (968)
Q Consensus 796 aL~nl~~ 802 (968)
.+.++-.
T Consensus 954 tf~klWF 960 (1692)
T KOG1020|consen 954 TFLKLWF 960 (1692)
T ss_pred HHHHHhc
Confidence 7777653
No 328
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=58.64 E-value=31 Score=33.04 Aligned_cols=72 Identities=11% Similarity=0.200 Sum_probs=60.5
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCC
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP 711 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~ 711 (968)
++..|..-+.++++.++..|+.+|-.++.++......++.....+..|++++....+..++...+..+...+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 567777888889999999999999999988888888888888899999999988667778888887776654
No 329
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.86 E-value=2.8e+02 Score=33.09 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=94.3
Q ss_pred ccChHHHHHHHHHHHHhccChhHHHH-hhhc--cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhC--Cch
Q 002091 390 GRRIEERKLAVALLLELSTCNTLRDQ-IGDV--QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKA--NYF 464 (968)
Q Consensus 390 ~~~~~~~~~A~~~L~~Ls~~~~~~~~-i~~~--~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~--g~v 464 (968)
.-..+.+--|+..|+.+.++...... +-.. ...+..++..+. .++.-+..++++|.|+-.++-++..+... ..+
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESIL 633 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Confidence 33556677788888877663322211 1110 123444555444 56777888999999998887777766543 112
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhcc--CchhhHHHhhcCchHHHHHhhhc-----CCHHHHHHHHHHHHHhcCCCcc
Q 002091 465 KHLLQRLSAG-PESVKMRMATTLAEMEL--TDHHKASLLEGNVLGPLLHLVSR-----GDIQMKKVAVKALRNLSSVPQN 536 (968)
Q Consensus 465 ~~Lv~~L~~~-~~~~~~~aa~~L~~L~~--~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~Ls~~~~~ 536 (968)
.+++. .+.+ +..++...+....+++. ...+- +.+..+.|...+.. ++.+....++.||.+|+..+..
T Consensus 634 ~~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~ 708 (745)
T KOG0301|consen 634 DPVIE-ASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS 708 (745)
T ss_pred hhhhh-hhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence 22222 2222 34555555555555431 11110 13444554444432 2445677888999999988888
Q ss_pred HHHHHHcCChHHHHHHhcccC
Q 002091 537 GLQMIKEGAVGPLVDLLLHHS 557 (968)
Q Consensus 537 ~~~i~~~g~v~~Lv~lL~~~~ 557 (968)
..++.+.--+..+++-+++..
T Consensus 709 ~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 709 VIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred HHHHHHhcCHHHHHHHHHHhc
Confidence 888888777888888887644
No 330
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=57.83 E-value=71 Score=37.16 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=68.5
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH
Q 002091 596 EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII 675 (968)
Q Consensus 596 ~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 675 (968)
++..++..+.+.+..++..++..|..+... ..++-..+. +|.+..|..-+-+..+.||..|+.+|+.+-+...++
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-- 166 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-- 166 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh--
Confidence 444445555667788999999888887643 222222222 355666666666678899999999999986332222
Q ss_pred HHhhccccHHHHHHHhccCCCHHHHHHHHHHH
Q 002091 676 REHVGQKCLETLVTIIQSSHNEEEIASAMGIL 707 (968)
Q Consensus 676 ~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L 707 (968)
+......|+.+++.+.+.+++..|+--+
T Consensus 167 ----en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 167 ----ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 2245667888888888888888776444
No 331
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=57.52 E-value=72 Score=31.32 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=66.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHh--CCchHHHHHHHhcC-CHHHHHHHHHHHHHh----ccCch
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAK--ANYFKHLLQRLSAG-PESVKMRMATTLAEM----ELTDH 494 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~--~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L----~~~~~ 494 (968)
.+..+.++|++.++..+-.++..+.-.+...+. ..+.+ ...+..++.+|+.. +..+++.+..+|..+ ...++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445566788888888888777777766544322 33323 23477788888876 456777777777776 23344
Q ss_pred hhHHHhh---cCchHHHHHhhhcCCHHHHHHHHHHHHHhc
Q 002091 495 HKASLLE---GNVLGPLLHLVSRGDIQMKKVAVKALRNLS 531 (968)
Q Consensus 495 ~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 531 (968)
....+.. .+.++.+++++++ ......++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 3444443 3566677776654 455566666666665
No 332
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=57.12 E-value=1.1e+02 Score=37.51 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=109.6
Q ss_pred HHHHhc-cCchhhHHHhhcCchHHHHHhhhcC-CHHHHHHHHHHHHHhcCCCccHHHHHHcCChH--HHHHHhcccCCCC
Q 002091 485 TLAEME-LTDHHKASLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVG--PLVDLLLHHSSSS 560 (968)
Q Consensus 485 ~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~--~Lv~lL~~~~~~~ 560 (968)
+|++.. ..++++..+.+.|++..+.+.++.- ..+.+..+++.+.|++...+++........+. .+-.++...+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~--~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWD--S 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--h
Confidence 677774 4568888999999999999999864 56889999999999997555443332222222 3333444433 1
Q ss_pred cchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCc
Q 002091 561 SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSA 640 (968)
Q Consensus 561 ~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~ 640 (968)
.+....++.+|+.+..+++.... ... -+.+.+....++...... ..+... . ..
T Consensus 572 ~ersY~~~siLa~ll~~~~~~~~------~~~---------------r~~~~~~l~e~i~~~~~~----~~~~~~-~-~~ 624 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEKTTE------CVF---------------RNSVNELLVEAISRWLTS----EIRVIN-D-RS 624 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCcCcc------ccc---------------hHHHHHHHHHHhhccCcc----ceeehh-h-hh
Confidence 46788899999999886543111 000 112222222222222111 111111 1 11
Q ss_pred hHH-HHHhhc-cCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHH
Q 002091 641 IPV-LVQLCE-HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMG 705 (968)
Q Consensus 641 i~~-Lv~ll~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~ 705 (968)
... +..++. +..+..+.+|.+++.++... .++......+.+.++.+.+.-......+++..+..
T Consensus 625 f~~~~~~il~~s~~~g~~lWal~ti~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (699)
T KOG3665|consen 625 FFPRILRILRLSKSDGSQLWALWTIKNVLEQ-NKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL 690 (699)
T ss_pred cchhHHHHhcccCCCchHHHHHHHHHHHHHc-ChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence 222 444444 34578899999999999843 44466666677777776665433223333333333
No 333
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=56.00 E-value=3.8 Score=51.35 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=38.1
Q ss_pred CcccccccccCCC-CceecCCchhhhHHHHHHHHhcCCCCCCCCCC
Q 002091 264 QSFYCPITRDVMV-DPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (968)
Q Consensus 264 ~~~~cpi~~~~m~-dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~ 308 (968)
..+.|+||+++|+ -=-++-|||.||-.|+.-|+.. +..||+|+.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 4569999999999 6677889999999999999965 678999973
No 334
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=55.99 E-value=3.4e+02 Score=30.51 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=67.7
Q ss_pred ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC----CCHHHHHHHHHHHhcCCC-CHHhHHH-HHHcCC
Q 002091 652 NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS----HNEEEIASAMGILSKLPE-VPQFTQW-LLDAGA 725 (968)
Q Consensus 652 ~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~~~~~~Al~~L~nL~~-~~~~~~~-l~~~g~ 725 (968)
+..+...+.++|+|+. ..+........+......+++.+... -..++..-=++.|--|.. ..+.+.. +.+.+|
T Consensus 110 d~~vi~EslKCLcNlv-f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLV-FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred chHHHHHHHHHHHHHH-hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 4567788899999998 66777777777776666666655332 112233334455555555 5555554 557899
Q ss_pred HHHHHHHhhcCCCCC------C---chhHHHHHHHHHHhhccCC
Q 002091 726 LPIVLNFLKNGRQND------P---NRFQVVENAVGALRRFTAP 760 (968)
Q Consensus 726 l~~Lv~lL~~~~~~~------~---~~~~v~e~a~~aL~~L~~~ 760 (968)
++.+-+.+.+.-... + ......-.++.++.|++..
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 999999998732211 1 2233445667788888875
No 335
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=55.91 E-value=86 Score=33.48 Aligned_cols=149 Identities=23% Similarity=0.203 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhccChhHHHHhhhccCh-HHHHHHhhc----CCCHHHHHHHHHHHHhccCCchhHHHHHhCC--chHH
Q 002091 394 EERKLAVALLLELSTCNTLRDQIGDVQGC-ILLLVTMAS----SDDNQASRDAQELLENLSFSDDNVVQMAKAN--YFKH 466 (968)
Q Consensus 394 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~----s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g--~v~~ 466 (968)
+.+--++..+|.+..++.....+....+. ...+..++. +..+..+..+++++.|+-.++..+..+.... .+-.
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILE 157 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHH
Confidence 34556677777776666665555442222 334444432 3567778889999999998888888776643 3333
Q ss_pred HHHHHhcC----CHHHHHHHHHHHHHhccCch-hh-HHHhhcCchHHHHHhhhc--CCHHHHHHHHHHHHHhcCCCccHH
Q 002091 467 LLQRLSAG----PESVKMRMATTLAEMELTDH-HK-ASLLEGNVLGPLLHLVSR--GDIQMKKVAVKALRNLSSVPQNGL 538 (968)
Q Consensus 467 Lv~~L~~~----~~~~~~~aa~~L~~L~~~~~-~~-~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~~~~~~~ 538 (968)
.+..+... +..++..++..++|++..-. .+ ..=.....+..+++.+.. .+++....++-||++|...+....
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 43333333 57888899999999853211 11 000011245556663332 589999999999999997665555
Q ss_pred HHHH
Q 002091 539 QMIK 542 (968)
Q Consensus 539 ~i~~ 542 (968)
...+
T Consensus 238 ~~~~ 241 (268)
T PF08324_consen 238 QLAK 241 (268)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 5554
No 336
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=55.14 E-value=1.9e+02 Score=35.21 Aligned_cols=170 Identities=17% Similarity=0.192 Sum_probs=92.1
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCC--chhHHHHHhCCchHHHHHHHhc----CCHHHHHHHHHHHHHhcc---
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFS--DDNVVQMAKANYFKHLLQRLSA----GPESVKMRMATTLAEMEL--- 491 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~--~~n~~~i~~~g~v~~Lv~~L~~----~~~~~~~~aa~~L~~L~~--- 491 (968)
.++..+..++.+.+... ..|...|..+... .++...+ ..+..+++. .++.++..|.-+++.|..
T Consensus 395 ~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~e~l------~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTEELL------KELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----HHHH------HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCHHHH------HHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 35667777776643332 2355556555422 2333322 344444432 346677777777777632
Q ss_pred -Cc------hhhHHHhhcCchHHHHHhhh----cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCC
Q 002091 492 -TD------HHKASLLEGNVLGPLLHLVS----RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSS 560 (968)
Q Consensus 492 -~~------~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~ 560 (968)
.. ..+........++.|...+. .++..-+..++++|+|+-. ...++.|..++......+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccc
Confidence 21 11112222446677776665 3466888999999999832 236778888887663334
Q ss_pred cchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhc--cCCHHHHHHHHHHHHH
Q 002091 561 SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN--LTGPNVQQRILQTFNA 621 (968)
Q Consensus 561 ~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~--~~~~~~~~~al~~L~~ 621 (968)
..++..|+++|..++... ...+...++.+.. ..++++|..|..+|..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~--------------~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHC--------------PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHTTTTGGGT---------------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcC--------------cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 678888999888775422 1234455666554 3456677766665554
No 337
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=55.05 E-value=2.7e+02 Score=29.07 Aligned_cols=125 Identities=17% Similarity=0.117 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHhccCh-hHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHH
Q 002091 392 RIEERKLAVALLLELSTCN-TLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQR 470 (968)
Q Consensus 392 ~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~ 470 (968)
+++.+...+..|..++.+. .+...+ +..|+.+...+....+.-+...+..+...++ +.. +.+..++..
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~~~~~~v------~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f----~~L~~~L~~ 82 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKNVCVPPV------LQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF----PFLQPLLLL 82 (234)
T ss_pred ChHHHHHHHHHHHHHhccCccchhHH------HHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----HHHHHHHHH
Confidence 4567778888888888755 333333 3456666666666655555555555532221 111 223333332
Q ss_pred --Hh------cC--CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhh-hcCCHHHHHHHHHHHHHhc
Q 002091 471 --LS------AG--PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLV-SRGDIQMKKVAVKALRNLS 531 (968)
Q Consensus 471 --L~------~~--~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls 531 (968)
++ .+ ..+.....+..+..++....++ -...++.+..+| ++.++..+..++.+|..|+
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11 11 2344444455666664433332 134678888888 7788899999999999998
No 338
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=54.26 E-value=80 Score=30.81 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.1
Q ss_pred ccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHH
Q 002091 682 KCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQ 718 (968)
Q Consensus 682 ~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~ 718 (968)
..++.|+++|+...+..++.+++++||.|.. ++...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 3567788888888778899999999999887 665554
No 339
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=53.19 E-value=96 Score=37.09 Aligned_cols=188 Identities=13% Similarity=0.166 Sum_probs=109.5
Q ss_pred hccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhc
Q 002091 679 VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRF 757 (968)
Q Consensus 679 ~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L 757 (968)
+..+.++.|++++... +..++. ..|.++-. -+...+.+++..+++.+...+.+ .+..+|+.++..+..+
T Consensus 327 yq~~i~p~l~kLF~~~-Dr~iR~---~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D------Tn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP-DRQIRL---LLLQYIEKYIDHLTKQILNDQIFPHVALGFLD------TNATLREQTLKSMAVL 396 (690)
T ss_pred cccchhhhHHHHhcCc-chHHHH---HHHHhHHHHhhhcCHHhhcchhHHHHHhhccc------CCHHHHHHHHHHHHHH
Confidence 4668899999999874 444543 34555544 45566677888889999999988 6788999999888887
Q ss_pred cCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCc
Q 002091 758 TAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGI 837 (968)
Q Consensus 758 ~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~ 837 (968)
+...++. ......+..+-++-.+.+..+|-....+|+.++.....
T Consensus 397 a~kL~~~----~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~------------------------------- 441 (690)
T KOG1243|consen 397 APKLSKR----NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA------------------------------- 441 (690)
T ss_pred Hhhhchh----hhcHHHHHHHHhhCccccCcccccceeeecccccccch-------------------------------
Confidence 7642222 11111122222222223345555555455444421100
Q ss_pred ccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHH
Q 002091 838 ESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVER 917 (968)
Q Consensus 838 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 917 (968)
. ..+.-.+.++.+-+.+.=...|.++..+|..... . .-..=+....++.+.-+.-++++.++..|...+..
T Consensus 442 -~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~--~---~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 442 -S---VRKRVLASAFTRALKDPFVPARKAGVLALAATQE--Y---FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred -h---hhccccchhhhhhhcCCCCCchhhhhHHHhhccc--c---cchhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence 0 0111133444555555556677777777766541 1 11111234456667777777888888888888887
Q ss_pred Hhc
Q 002091 918 IFR 920 (968)
Q Consensus 918 l~~ 920 (968)
++.
T Consensus 513 fl~ 515 (690)
T KOG1243|consen 513 FLE 515 (690)
T ss_pred HHh
Confidence 753
No 340
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=53.14 E-value=9 Score=40.49 Aligned_cols=44 Identities=23% Similarity=0.570 Sum_probs=34.4
Q ss_pred CcccccccccCCC----CceecCCchhhhHHHHHHHHhcCCCCCCCCCC
Q 002091 264 QSFYCPITRDVMV----DPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (968)
Q Consensus 264 ~~~~cpi~~~~m~----dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~ 308 (968)
.++-||||.+-+. +|...+|||+--..|.++....+ .+||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4566999998775 78889999997766666665555 99999965
No 341
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.12 E-value=9.1 Score=41.47 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=37.4
Q ss_pred cccccccccCCCCceecCCchh-hhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 265 SFYCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
.-.|=||+.=-+|-|++||-|. .|..|-+. ++-.+..||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~-Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKS-LRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHH-HHHhhcCCCccccchH
Confidence 4679999999999999999988 78888664 2223568999999874
No 342
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=53.11 E-value=46 Score=31.29 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=58.4
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhcc--CCCHHHHHHHHHHHhcCCC
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS--SHNEEEIASAMGILSKLPE 712 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~~Al~~L~nL~~ 712 (968)
++..|..-+.++++.++..|+.+|-.++..+.......+.....+..|++++.. ..+..++..++..+.+...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 577788888999999999999999999977777677777776788889999976 3567788888877765543
No 343
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.95 E-value=11 Score=41.15 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=47.4
Q ss_pred cccccccCCC------CceecCCchhhhHHHHHHHHhcCCCCCCCCCCcC--C---CCCCccCHhHHHHHHHH
Q 002091 267 YCPITRDVMV------DPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL--D---TSILRPNKTLRQSIEEW 328 (968)
Q Consensus 267 ~cpi~~~~m~------dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l--~---~~~l~pn~~l~~~I~~w 328 (968)
.|-||.+-+. -|-++.||||+|-.|+.+-+..+.-.||.++++. . ...+..|+.+-..|+..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4556655554 4666779999999999988877777899999983 2 24678888888888775
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.12 E-value=27 Score=42.25 Aligned_cols=41 Identities=20% Similarity=0.427 Sum_probs=35.4
Q ss_pred CcccccccccCCCCcee-cCCchhhhHHHHHHHHhcCCCCCCCCCC
Q 002091 264 QSFYCPITRDVMVDPVE-TSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~CP~t~~ 308 (968)
+.-.|..|.-.+.=|++ .-|||.|-+.|.+ .+.+.||.|.-
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 45689999999999988 5899999999988 56789999964
No 345
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=51.87 E-value=40 Score=31.75 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=56.5
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHH-HHHHHHHHHhcC
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE-EIASAMGILSKL 710 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~~~~Al~~L~nL 710 (968)
++..|..-+.++++.++..|+.+|-.++..+......++...+.+..|+.++....+.. ++..++..+..-
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 56777788889999999999999999997777777777777888999999988875544 777776666543
No 346
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=51.43 E-value=43 Score=32.01 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=57.8
Q ss_pred CChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC-CChHHHHHHHHHHHHH
Q 002091 847 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS-PSPKLQEKALDSVERI 918 (968)
Q Consensus 847 g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l 918 (968)
.++..|..=|.+.|+.++..|+..|..+. +.. ......+...+.++.|..++.. .++.|+++.+.++...
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W 108 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCG--KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 36788888888999999999999999998 322 2566778888899999999966 7889999999999764
No 347
>PLN02189 cellulose synthase
Probab=50.73 E-value=11 Score=47.01 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=36.8
Q ss_pred cccccccccC-----CCCceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 265 SFYCPITRDV-----MVDPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 265 ~~~cpi~~~~-----m~dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
.-+|+||++- +-+|.+. .||.-.||.|.+-=-++|+..||+|+++..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4489999985 3467664 478889999997555678999999998875
No 348
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=50.72 E-value=46 Score=31.74 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=57.6
Q ss_pred CChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 002091 847 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLS-SPSPKLQEKALDSVERI 918 (968)
Q Consensus 847 g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l 918 (968)
.++..|..=|.++|+.++..|+..|..+. +.. ......+.+.+.++.+..++. ..++.|+++++.++..-
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG--~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCG--THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW 112 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 37888888888999999999999999988 321 256777888899999999985 57789999999999764
No 349
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.24 E-value=3.7 Score=42.66 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=30.1
Q ss_pred cccccccccCCCCceecCCchhh-hHHHHHHHHhcCC--CCCCCCCCcC
Q 002091 265 SFYCPITRDVMVDPVETSSGQTF-ERSAIEKWFSDGN--NLCPLTMTVL 310 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~-~r~~i~~~~~~~~--~~CP~t~~~l 310 (968)
+-+|.||.+.-+|=|.++|||.. |-.| |. ..||+|++.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 77899999999999999999862 3333 32 2689888755
No 350
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=50.18 E-value=45 Score=39.45 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=72.4
Q ss_pred hHHHHhhccCCChhhhHHHHHHHHhhh-cccccc----hhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 849 VRPLVRVLEDPDHGACEASLDALVTLI-EGERLQ----NGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 849 i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~----~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
...++.+|.+.....|...+.++.|+. +-.+.. .+...+. ..+..+.+-+.+.+|-.+.+|+..+.++|.-..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~--~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLN--DLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHH--HHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 677889999999999999999999998 221111 1111111 224445555577899999999999999986543
Q ss_pred h----HHHhcccCCchhhhhcccCCchhhHHHHHHHHHHh
Q 002091 924 F----KQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 924 ~----~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~ 959 (968)
. +.++ ....+.-+++.+.-+|+.|.+.+..|=
T Consensus 379 k~~~~r~ev----~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 379 KTVGRRHEV----IRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred cccchHHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1 1122 233566788899999999998887663
No 351
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=49.86 E-value=3.7e+02 Score=29.17 Aligned_cols=201 Identities=10% Similarity=0.101 Sum_probs=126.1
Q ss_pred HHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc-hhhHH----Hh-hcCchHHHHHhhhcC-CHHHHHHHHHHHHH
Q 002091 457 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKAS----LL-EGNVLGPLLHLVSRG-DIQMKKVAVKALRN 529 (968)
Q Consensus 457 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~-~~~~~----i~-~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~ 529 (968)
.+-++|.+..++..|...+-+.+..++.+..++-..+ ..+.. +. ....+..|+.- .. .+++-..+...|..
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHH
Confidence 4667899999999999999899999888887773211 22211 11 23444444443 12 35666666666666
Q ss_pred hcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccc--hhH-HHHHHHhhcc
Q 002091 530 LSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLES--DKE-IFMLFSLINL 606 (968)
Q Consensus 530 Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~--~~~-i~~l~~ll~~ 606 (968)
...++.-...+....-+......+..+. =++...|..+...+.......-+ ..+.. ..+ ....-.++.+
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~---FdiasdA~~tfK~llt~Hk~~va-----Efl~~n~d~ff~e~~~~Ll~s 223 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPN---FDIASDAFSTFKELLTRHKSVVA-----EFLIRNYDNFFAEVYEKLLRS 223 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccc---hHHHHHHHHHHHHHHHHhHHHHH-----HHHHhChhhhHHHHHHHHhcc
Confidence 5555555555666666666666665544 35666666666555432110000 00000 011 2224456677
Q ss_pred CCHHHHHHHHHHHHHhccCCCh-hhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 607 TGPNVQQRILQTFNALCRSPSA-GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 607 ~~~~~~~~al~~L~~L~~~~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
++--++..++..|..+--...| ....+.+.+...+..+..+|+.++..+|..|....+.++
T Consensus 224 ~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfv 285 (342)
T KOG1566|consen 224 ENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFV 285 (342)
T ss_pred cceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHh
Confidence 7777888888888887655444 444555666677999999999999999999999998887
No 352
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=8.1 Score=41.87 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=32.7
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
..-.|-||.+=.++-+-+||||+.| |+.-. .....||+|++..
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs--~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS--KHLPQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHH--hhCCCCchhHHHH
Confidence 4457999999999999999999988 44322 1235699998754
No 353
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=48.46 E-value=1.6e+02 Score=28.80 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=72.0
Q ss_pred hHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHH
Q 002091 464 FKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIK 542 (968)
Q Consensus 464 v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 542 (968)
++.|.++|+.+ +..+|.++..+|+.|..-|.++.+....+. +.-. -.+.+....... +.+.. ....-+...-
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~---l~~~~-~~~~~ee~y~ 84 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDIS---LPMMG-ISPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhH---Hhhcc-CCCchHHHHH
Confidence 45677778776 689999999999999665555543222110 0000 000111111111 11111 1112233344
Q ss_pred cCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 002091 543 EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNAL 622 (968)
Q Consensus 543 ~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L 622 (968)
..++..|++.|++.+. ..-...++.++.++.... +... +---+..++.++..+...++..++....-|..|
T Consensus 85 ~vvi~~L~~iL~D~sL--s~~h~~vv~ai~~If~~l-~~~c------v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 85 TVVINALMRILRDPSL--SSHHTAVVQAIMYIFKSL-GLKC------VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHhc-CcCc------hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567888888887653 233445666666666321 1110 111235567777777655556666655554443
No 354
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=48.01 E-value=21 Score=35.17 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCH-hHHHHHHHHHhh
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNK-TLRQSIEEWKDR 331 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~-~l~~~I~~w~~~ 331 (968)
++..|.||.|.- -.||+..+- -.|+||.||..|...+..+-+ .+.+.|++..+.
T Consensus 110 ~~~~y~C~~~~~----------r~sfdeA~~------~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 110 ENNYYVCPNCHV----------KYSFDEAME------LGFTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred cCCceeCCCCCC----------cccHHHHHH------hCCCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 346899988864 234555442 258999999999766555543 346666655443
No 355
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=47.26 E-value=44 Score=31.78 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=56.5
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHH---HHHHHHHHHhc
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE---EIASAMGILSK 709 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~---~~~~Al~~L~n 709 (968)
++..|..-+.++++.++..|+.+|-.+..++.+....++.....+..|.+++....... ++..++..|..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 57778888888999999999999999997777777778878888999999988765544 67777666544
No 356
>PRK12495 hypothetical protein; Provisional
Probab=47.01 E-value=41 Score=34.03 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=9.0
Q ss_pred CcccccccccCCC
Q 002091 264 QSFYCPITRDVMV 276 (968)
Q Consensus 264 ~~~~cpi~~~~m~ 276 (968)
..|.||.|+..+.
T Consensus 41 sa~hC~~CG~PIp 53 (226)
T PRK12495 41 TNAHCDECGDPIF 53 (226)
T ss_pred chhhcccccCccc
Confidence 4577888877655
No 357
>PLN02195 cellulose synthase A
Probab=46.81 E-value=14 Score=45.89 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=36.5
Q ss_pred ccccccc-----CCCCceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 267 YCPITRD-----VMVDPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 267 ~cpi~~~-----~m~dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
.|.||++ .+-+|.+. .||.-.||.|.+-=-++|+..||+|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5999998 45578775 588889999996445578999999998886
No 358
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=46.66 E-value=3.9e+02 Score=28.48 Aligned_cols=216 Identities=12% Similarity=0.098 Sum_probs=109.1
Q ss_pred HHhhcCCCHHHHHHHHHHHHhccC-CchhHHHHHhCCchHHHHHHHhc--CCHHHHHHHHHHHHHhccCchhhHHHhhcC
Q 002091 427 VTMASSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLLQRLSA--GPESVKMRMATTLAEMELTDHHKASLLEGN 503 (968)
Q Consensus 427 v~lL~s~~~~~~~~a~~~L~~Ls~-~~~n~~~i~~~g~v~~Lv~~L~~--~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g 503 (968)
=..|.++|..+|..|+..|..+-. -+.+. ....-+..|+..+.+ .+...-..++.++..|.......... ...
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~~ 80 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AVK 80 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HHH
Confidence 345778899999999988887742 22221 111113444444322 23344444456665554222110000 011
Q ss_pred chHHHHHhh--hcCCHHHHHHHHHHHHHhcCCCccHHHHHH--cCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091 504 VLGPLLHLV--SRGDIQMKKVAVKALRNLSSVPQNGLQMIK--EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 579 (968)
Q Consensus 504 ~i~~Lv~lL--~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 579 (968)
.+..+.+-. ++-....|..+...|..|..+ ++..+.. .+.+..+++++....+ |.-.-.+...+..+...-.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkD--PRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKD--PRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHhcc
Confidence 122222211 122346788888888888653 2233332 2457777777765442 5656666666666554221
Q ss_pred cccCCCCccccccchhHHHHHHHhhc----------cCCH--HHHHHHHHHHHH-hccCCChhhHHHHHhhcCchHHHHH
Q 002091 580 YQESSQTPVTLLESDKEIFMLFSLIN----------LTGP--NVQQRILQTFNA-LCRSPSAGNIKTTLTQCSAIPVLVQ 646 (968)
Q Consensus 580 ~~~~~~~~~~il~~~~~i~~l~~ll~----------~~~~--~~~~~al~~L~~-L~~~~~~~~~~~~i~~~g~i~~Lv~ 646 (968)
. ......+...+. .++| ..++.....|.+ +++.+. +. .-++|.|++
T Consensus 157 ~-------------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-------fa-~~~~p~Lle 215 (262)
T PF14500_consen 157 I-------------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-------FA-PFAFPLLLE 215 (262)
T ss_pred c-------------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-------hH-HHHHHHHHH
Confidence 1 222333333332 1222 122222222222 222221 12 247999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCC
Q 002091 647 LCEHDNENVRANAVKLFCCLVDDGD 671 (968)
Q Consensus 647 ll~~~~~~v~~~a~~~L~~Ls~~~~ 671 (968)
-|.++...++..++.+|........
T Consensus 216 KL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 216 KLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999988874333
No 359
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=46.49 E-value=61 Score=30.77 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=55.6
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC------CChHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS------PSPKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l 918 (968)
++..+..-|.+.|+.++..|+..|-.+. +.. ......+...+.+.-+++++.. .++.|+++.+.++..-
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCG--ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 6788888889999999999999999998 321 2566778888888889998852 5688999999988654
No 360
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=45.84 E-value=70 Score=30.06 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=55.6
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC---CChHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS---PSPKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l 918 (968)
++..|-.-|.++++.++..|+..|-.+. +.. ......+.....+..++.++.. .++.|+++++.++...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg--~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCG--KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC--hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 7788888888999999999999999998 432 2466677777778888888853 5788999999999764
No 361
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=45.76 E-value=19 Score=31.47 Aligned_cols=27 Identities=26% Similarity=0.667 Sum_probs=22.9
Q ss_pred CCchhhhHHHHHHHHhcCCCCCCCCCCc
Q 002091 282 SSGQTFERSAIEKWFSDGNNLCPLTMTV 309 (968)
Q Consensus 282 ~~g~t~~r~~i~~~~~~~~~~CP~t~~~ 309 (968)
.|.|.|--.||.+|+.. +..||.+++.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 48899999999999965 5699998764
No 362
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=45.15 E-value=68 Score=30.45 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=55.2
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhcc-----CCCHHHHHHHHHHHhc
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS-----SHNEEEIASAMGILSK 709 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----~~~~~~~~~Al~~L~n 709 (968)
++..|..-+.++++.++..|+.+|-.++.++......++...+.+..|++++.. ..+..++...+..+..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 577778888899999999999999999977777777888888889999999963 2356677666655543
No 363
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=45.14 E-value=19 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=22.2
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhc-CCCCCCCCCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD-GNNLCPLTMT 308 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~-~~~~CP~t~~ 308 (968)
+.|.||+|++ -.|- ..+.+-+.+++... ....||+|..
T Consensus 1 ~~f~CP~C~~-~~~~------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK-GFSE------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC-ccCH------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 4689999988 3322 12334444444432 3467999964
No 364
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=44.48 E-value=16 Score=32.43 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=31.9
Q ss_pred CCCCcccccccccCCCCceecCCc------hhhhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 002091 261 EPLQSFYCPITRDVMVDPVETSSG------QTFERSAIEKWFSDGNNLCPLTMTVLDTSI 314 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~~g------~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~ 314 (968)
.|.+.+.|||++++-..-|-+... .-||..++.+-...| ..=|.+|+++.+..
T Consensus 36 C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~sM 94 (113)
T PF06416_consen 36 CPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPSM 94 (113)
T ss_dssp S-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTT
T ss_pred CCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChhh
Confidence 366889999999999999987532 239999999988654 46689998886543
No 365
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=44.40 E-value=18 Score=33.64 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=36.3
Q ss_pred cccccccccCCCC--cee-cCCchh------hhHHHHHHHHhcCCCCCCCCCCcCCCCCCc
Q 002091 265 SFYCPITRDVMVD--PVE-TSSGQT------FERSAIEKWFSDGNNLCPLTMTVLDTSILR 316 (968)
Q Consensus 265 ~~~cpi~~~~m~d--pv~-~~~g~t------~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~ 316 (968)
..-|.||.+-..+ =|+ +++|.| ||..|+++|- ..+..+|.-+...-..+..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~-~~~~rDPfnR~I~y~F~fP 85 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR-RERNRDPFNRNIKYWFNFP 85 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH-hhccCCCcccceEEEEeCC
Confidence 5679999998887 554 677754 8899999995 4467888877654333333
No 366
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=43.98 E-value=1.7e+02 Score=28.74 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=68.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhh--cCchHHHHHhhhcC-CHHHHHHHHHHHHHhcC----CCcc
Q 002091 464 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE--GNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS----VPQN 536 (968)
Q Consensus 464 v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~----~~~~ 536 (968)
+..+..+|++.++..|..++..+......... ..+.+ .-.+..|+.+|+.. .+.+++.++.+|..|.. .++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 34567778888888888887777666543322 33333 34688889999775 46778888888888873 3443
Q ss_pred HHHHHHc---CChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 537 GLQMIKE---GAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 537 ~~~i~~~---g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
..++.-. +.++.++.++.+ ....+.++.+|..+..
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLP 143 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHH
Confidence 3333322 234555555543 3457778888877765
No 367
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=43.67 E-value=2.7e+02 Score=34.97 Aligned_cols=142 Identities=19% Similarity=0.325 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCc--cCchHHHHHHHHHHHHHh---hcccc
Q 002091 79 NREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASL--DLSTDIIEEIEKVCDNMQ---RAEFR 153 (968)
Q Consensus 79 ~~~l~~a~~Ll~~c~~~Sklyll~~~~~~~~~~~~~~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~~~~~---~~~~~ 153 (968)
...|+..|.+++.= --|--+.+|+.-+.+ +.+...+ ++|..||...= .+|.++++||..+++++. |+-..
T Consensus 1014 K~QMDaIKqmIekK---v~L~~L~qCqdALeK-qnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~T 1088 (1439)
T PF12252_consen 1014 KAQMDAIKQMIEKK---VVLQALTQCQDALEK-QNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVT 1088 (1439)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHh-hhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34466666666541 111245555554443 3444443 57788886541 289999999999998843 33333
Q ss_pred cch-hHHHHHHHHHhhhh---hccCChhhhh-HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhchHHHHhHHHH
Q 002091 154 AAI-AEEEILEKVESGIQ---ERNVDRSYAN-HLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQI 228 (968)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (968)
+-. +++......+.++. ++-.+.+-.. .-+..+-+.+. +-..|++|+.-|+.|+-.+....+.-+-+.++.+
T Consensus 1089 PVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia---~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkL 1165 (1439)
T PF12252_consen 1089 PVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIA---NLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKL 1165 (1439)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH---HHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHH
Confidence 222 22233222222221 1100000000 00111111111 2345677777777777666655544444444444
No 368
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=43.56 E-value=19 Score=27.77 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=23.8
Q ss_pred cccccccccCC--CCceec--CCchhhhHHHHH
Q 002091 265 SFYCPITRDVM--VDPVET--SSGQTFERSAIE 293 (968)
Q Consensus 265 ~~~cpi~~~~m--~dpv~~--~~g~t~~r~~i~ 293 (968)
.-+||+|++.+ .|.+++ .||-.|=|.|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 44799999999 688876 589999999943
No 369
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.21 E-value=2.2e+02 Score=34.13 Aligned_cols=136 Identities=17% Similarity=0.199 Sum_probs=86.3
Q ss_pred chhHHHHHHHHHHhhccCCCCHHH----HHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEW----QKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGF 817 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~----~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~ 817 (968)
.+..+|.+|+..+.++----+|+. ...+++ +-...+.++|.+.-|.+|..|...++.... .|
T Consensus 186 ~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s-------------~f 251 (1005)
T KOG1949|consen 186 RNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS-------------KF 251 (1005)
T ss_pred CchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH-------------HH
Confidence 567899999999988764433433 222322 235678899999999999999988877651 12
Q ss_pred cccCCCCCcccccCCCccCcccchHHhhcCChHHHHh-h---c-cCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcC
Q 002091 818 WCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVR-V---L-EDPDHGACEASLDALVTLI-EGERLQNGSKVLEDAN 891 (968)
Q Consensus 818 ~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~-l---L-~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~ 891 (968)
|.+-|+ ..+..|+. + + .+...+||...-..|.-++ .+ .+..+.+.
T Consensus 252 We~iP~-----------------------~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np-----~sh~~le~- 302 (1005)
T KOG1949|consen 252 WEMIPP-----------------------TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP-----LSHPLLEQ- 302 (1005)
T ss_pred HHHcCH-----------------------HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc-----cchhHHHH-
Confidence 222211 12222221 1 1 2334468877777777777 33 23333333
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 002091 892 AIDRMVRFLSSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 892 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 920 (968)
+++++-..+.+.++.|+-++..+|.+|-.
T Consensus 303 ~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 303 LLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 45677777788889999999999988743
No 370
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=42.18 E-value=51 Score=28.79 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC
Q 002091 465 KHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 465 ~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
...+..|.++.+.+|.++...|..|..... ...+-..+++..+...|+++++.+-.+|..+|..|+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 445566777778899999999999854444 1112226678888889999999999999999999985
No 371
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=42.07 E-value=17 Score=35.47 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 002091 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSI 314 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~ 314 (968)
+..|.||-|..= .||+- .++ .+|+||.|+.+|.+.+
T Consensus 107 ~~~Y~Cp~c~~r----------~tf~e-----A~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 107 NMFFICPNMCVR----------FTFNE-----AME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred CCeEECCCCCcE----------eeHHH-----HHH-cCCcCCCCCCEeeecc
Confidence 378999987731 12222 222 3799999999986543
No 372
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=42.05 E-value=10 Score=40.69 Aligned_cols=26 Identities=15% Similarity=0.477 Sum_probs=18.8
Q ss_pred cccccccccCCC---CceecCCchhhhHH
Q 002091 265 SFYCPITRDVMV---DPVETSSGQTFERS 290 (968)
Q Consensus 265 ~~~cpi~~~~m~---dpv~~~~g~t~~r~ 290 (968)
.|.||+|+..|. ....-+.||+||..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 489999999985 33444567888765
No 373
>PF14353 CpXC: CpXC protein
Probab=41.33 E-value=14 Score=34.45 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=30.3
Q ss_pred cccccccccCCCCceecCCchhhhHHHHHHHHhcC--CCCCCCCCCcC
Q 002091 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDG--NNLCPLTMTVL 310 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~--~~~CP~t~~~l 310 (968)
+..||-|+.-+.=.|-..-.-+-+....++-++.. .++||.||...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 35799999988866654433345555566665322 35799999875
No 374
>PLN02436 cellulose synthase A
Probab=40.32 E-value=20 Score=44.89 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=37.4
Q ss_pred CcccccccccC-----CCCceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 264 QSFYCPITRDV-----MVDPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 264 ~~~~cpi~~~~-----m~dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
..=+|.||++= .-||-+. .||.-.||.|.+-=-++|+..||+|+++..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34489999974 3467765 488889999997555678999999998875
No 375
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.62 E-value=1.5e+02 Score=26.25 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=50.9
Q ss_pred cCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHH
Q 002091 502 GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAI 571 (968)
Q Consensus 502 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L 571 (968)
.+.+..|+++.....+..+..++..|..|..++.....+.+-|++..|-++=...+ +..+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~---~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVE---PNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCC---HHHHHHHHHHH
Confidence 56778888888888878999999999999999999999999999998665543322 44454444443
No 376
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.11 E-value=34 Score=37.81 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=27.8
Q ss_pred CcccccccccCCC---CceecCCchhhhHHHHHHHHh
Q 002091 264 QSFYCPITRDVMV---DPVETSSGQTFERSAIEKWFS 297 (968)
Q Consensus 264 ~~~~cpi~~~~m~---dpv~~~~g~t~~r~~i~~~~~ 297 (968)
.-|-|.||.+-.. +=+-+||+|.||+.|...++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4578999998765 345689999999999999875
No 377
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=39.11 E-value=24 Score=35.07 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=31.2
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCcc-CHhHHHHHHHHHhh
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP-NKTLRQSIEEWKDR 331 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~p-n~~l~~~I~~w~~~ 331 (968)
..|.||-|+.- .||+- .+ ...|.||.|+.+|.+.+-.. -..+++.|++-.+.
T Consensus 116 ~~Y~Cp~C~~r----------ytf~e-----A~-~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 116 MFFFCPNCHIR----------FTFDE-----AM-EYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CEEECCCCCcE----------EeHHH-----Hh-hcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 78999988732 23332 12 24799999999996643222 23456666655433
No 378
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=39.07 E-value=6.1e+02 Score=28.60 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=80.5
Q ss_pred HHHHHhhccCC-hhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhc---------cCCCHHHHHHHHHHHhcCC
Q 002091 642 PVLVQLCEHDN-ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQ---------SSHNEEEIASAMGILSKLP 711 (968)
Q Consensus 642 ~~Lv~ll~~~~-~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~---------~~~~~~~~~~Al~~L~nL~ 711 (968)
..++..+.++- ...+..++..++.|+.+.. ....+....-.+.|+.+-. ...+..+...++.+|.|+.
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~--~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKD--GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcccc--ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 33455555554 3445555666666653221 1111122223333333321 1134578899999999999
Q ss_pred C-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHH-HHHcCChHHHHHHhhc
Q 002091 712 E-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKR-AAEAGVIPKLVQLLEY 784 (968)
Q Consensus 712 ~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~-~~~~g~i~~Lv~lL~~ 784 (968)
. ++..++..++......+.+.+....... ....+.-.-+..|.-++.. .++.|.. +.+.++++.+.+++.+
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~-~~~~~~~~dlrLLflltal-e~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERN-FPKDSSIFDLRLLFLLTAL-ETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHh-hHHHHHHHHHHhcccHHHHHHhhc
Confidence 9 8888888888888877777765421100 1112333444555555554 4566544 5678999999999984
No 379
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.99 E-value=4.9e+02 Score=34.11 Aligned_cols=112 Identities=8% Similarity=0.093 Sum_probs=53.9
Q ss_pred chhHHHHHHHhhc--cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhc----cC---ChhHHHHHHHHH
Q 002091 593 SDKEIFMLFSLIN--LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE----HD---NENVRANAVKLF 663 (968)
Q Consensus 593 ~~~~i~~l~~ll~--~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~----~~---~~~v~~~a~~~L 663 (968)
+.+.+.....+.. ....+++..-+.++.++.......- . .| .+.+.++++ .+ ...+...+...|
T Consensus 838 s~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~l-----l-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~l 910 (1610)
T KOG1848|consen 838 SLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHL-----L-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCL 910 (1610)
T ss_pred hhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhh-----c-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhh
Confidence 3344444333333 4445566666677777654322111 1 11 333333332 22 345666666677
Q ss_pred HHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC
Q 002091 664 CCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE 712 (968)
Q Consensus 664 ~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~ 712 (968)
+-++.+.=.. ...-.=.+.+..++.+-+...+..+--.|++.+++++.
T Consensus 911 rlIssDfLqS-Lp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 911 RLISSDFLQS-LPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred hhhhhcchhc-CChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 7666322110 00001124455555555554566666778888887764
No 380
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=38.94 E-value=16 Score=35.13 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=22.3
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHh-cCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS-DGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~-~~~~~CP~t~~~l~~ 312 (968)
..|.||-|+. +|.-.-.....+ .|.+.||.|+.++.+
T Consensus 98 ~~Y~Cp~C~~------------~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 98 AYYKCPNCQS------------KYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred cEEECcCCCC------------EeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 6899996654 333211111211 356899999998844
No 381
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.92 E-value=1.1e+03 Score=31.36 Aligned_cols=184 Identities=13% Similarity=0.104 Sum_probs=97.6
Q ss_pred CCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhccc
Q 002091 724 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKN 803 (968)
Q Consensus 724 g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~ 803 (968)
|++|.|-.=|.+ .+..+|..|+..++.+... +..+-.=.........+.-+.+.++++|.++.....++-.+
T Consensus 259 ~vip~l~~eL~s------e~~~~Rl~a~~lvg~~~~~--~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 259 AVIPQLEFELLS------EQEEVRLKAVKLVGRMFSD--KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHhc------chHHHHHHHHHHHHHHHhc--chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 566777666666 6788999999999999874 33221100123444555555677889999998888877654
Q ss_pred CCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchh
Q 002091 804 SLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNG 883 (968)
Q Consensus 804 s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~ 883 (968)
.+...+ ..+....+.. .+.|+.++.....++.... ....
T Consensus 331 ~~~~~~-----------------------------------~~~~~~~l~~--~~~D~~~rir~~v~i~~~~----v~~~ 369 (1266)
T KOG1525|consen 331 NPSIAK-----------------------------------ASTILLALRE--RDLDEDVRVRTQVVIVACD----VMKF 369 (1266)
T ss_pred Cchhhh-----------------------------------HHHHHHHHHh--hcCChhhhheeeEEEEEee----hhHh
Confidence 322000 0011111111 2233333332222111111 0011
Q ss_pred hHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh-hhHH----Hhccc--C-CchhhhhcccCCchhhHHHHHHH
Q 002091 884 SKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP-EFKQ----KYGKS--A-QMPLVDLTQRGNSSMKSLSARVL 955 (968)
Q Consensus 884 ~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~----~~~~~--~-~~~Lv~ll~~~~~~~~~~A~~aL 955 (968)
...+... .+..+.+.+.+....|+..|..-|..++++- ..+. ..... . ...|+.++...+.+.|....++|
T Consensus 370 ~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il 448 (1266)
T KOG1525|consen 370 KLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERIL 448 (1266)
T ss_pred hhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHH
Confidence 2222222 5556666667778888888888888887631 0000 01110 1 22477777777666666556665
Q ss_pred HH
Q 002091 956 AH 957 (968)
Q Consensus 956 ~~ 957 (968)
+.
T Consensus 449 ~~ 450 (1266)
T KOG1525|consen 449 AE 450 (1266)
T ss_pred HH
Confidence 53
No 382
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=38.68 E-value=39 Score=31.20 Aligned_cols=48 Identities=15% Similarity=0.349 Sum_probs=38.4
Q ss_pred cccccccccCCCCceecC----CchhhhHHHHHH-HHh-cCCCCCCCCCCcCCC
Q 002091 265 SFYCPITRDVMVDPVETS----SGQTFERSAIEK-WFS-DGNNLCPLTMTVLDT 312 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~----~g~t~~r~~i~~-~~~-~~~~~CP~t~~~l~~ 312 (968)
=..|-||++.-.|+--+. ||.+.|-.|--. |-- .-+..||.|+..+..
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 467999999999988764 899999888876 643 457899999887743
No 383
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=37.96 E-value=29 Score=39.34 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=42.4
Q ss_pred hhcCCHHHHHHHHHHHHHhcCCCccHHHHHHc-CChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 512 VSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE-GAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 512 L~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
....+++++..|..++.+++.+.+||...+-. ..-..+++++..+. +++-+.+..++..+.
T Consensus 337 ~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~---~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 337 CAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPE---PRVNKAAARALAILG 398 (763)
T ss_pred hcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccc---cccchhhhHHHHHhh
Confidence 34568999999999999999988888765544 34455677776655 455555555555443
No 384
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=37.28 E-value=22 Score=44.74 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=37.1
Q ss_pred CcccccccccC-----CCCceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 264 QSFYCPITRDV-----MVDPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 264 ~~~~cpi~~~~-----m~dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
..=+|.||++= .-||.+. .||.-.||.|.+-=-++|+..||+|+++..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34479999985 3467765 588889999997545678999999998764
No 385
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=36.96 E-value=8.7e+02 Score=29.75 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=76.8
Q ss_pred cChHHHHHHhhc-C-------CCHHHHHHHHHHHHhccC--C-chhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHH
Q 002091 420 QGCILLLVTMAS-S-------DDNQASRDAQELLENLSF--S-DDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAE 488 (968)
Q Consensus 420 ~g~i~~Lv~lL~-s-------~~~~~~~~a~~~L~~Ls~--~-~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~ 488 (968)
.|.++.+++.|. + +++...+.|...+.++.. . +....-+++.=.++.++..+++...-.+..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 588899999882 1 345556677777777743 2 2222333444445556666777777888889998888
Q ss_pred hccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHH
Q 002091 489 MELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIK 542 (968)
Q Consensus 489 L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 542 (968)
++. +.+..-.-..+.+.-.+++++.+..++..|+.||.-+-.+.+...++.+
T Consensus 487 ~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 487 IEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 732 2222111223445556777777888888899999888776665555544
No 386
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=36.92 E-value=1.3e+02 Score=36.09 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=81.9
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHH-HhcCCHHHHHHHHHHHHHhccCchhhHHH
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQR-LSAGPESVKMRMATTLAEMELTDHHKASL 499 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~-L~~~~~~~~~~aa~~L~~L~~~~~~~~~i 499 (968)
.++|.|..-+++.+..+|+.++..+-..+..-+ ...++.-.++.+-.+ ++..+..++.+++.++..+.. .....
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---~lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---RLDKA 463 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---HHHHH
Confidence 456777777888899999999988887763222 223333445555444 455577888899888888861 11111
Q ss_pred hhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhccc
Q 002091 500 LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH 556 (968)
Q Consensus 500 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~ 556 (968)
.-..-+.++.+..+..+|.+....+++..++.....+...+.-..++|.++-+...+
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 112234455555566789998888888888876554433334445667666665543
No 387
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.91 E-value=97 Score=29.62 Aligned_cols=27 Identities=41% Similarity=0.554 Sum_probs=17.8
Q ss_pred hHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 546 VGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 546 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
|.+|+++|.+.+ ..+...|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d---~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDD---EELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G----TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCc---HHHHHHHHHHHHhhH
Confidence 788888886554 678888888887643
No 388
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=36.34 E-value=1.1e+02 Score=28.90 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=54.6
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCC-C-hHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSP-S-PKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~-~-~~v~~~a~~~L~~l 918 (968)
++..|..=|.++++.++..|+..|..+. +.. ......+...+.++.|..++... + +.|+++++.++..-
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg--~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCG--SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 6777888888999999999999999998 321 25677888888999999998553 3 34899998888654
No 389
>PHA03247 large tegument protein UL36; Provisional
Probab=35.95 E-value=1.5e+03 Score=32.35 Aligned_cols=84 Identities=18% Similarity=0.140 Sum_probs=66.5
Q ss_pred ccCCcCcHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHH---HH
Q 002091 8 TSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREI---KG 84 (968)
Q Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~L~~~l---~~ 84 (968)
+||..+-+-+++..|..-...|-.+.||+.++||...+|......|..+=.+++-..-.-+-.+..+|+++-..= ..
T Consensus 1446 a~~G~~dY~d~V~~l~~DL~~vP~L~kYVdFYrrg~~~F~~~~~~L~~lRADv~qA~G~~~~Ei~~AlEevt~vr~~~e~ 1525 (3151)
T PHA03247 1446 AGGGFIDYHEAVSRLAEDLNGVPSLRRYVPFFRRGHAEYLELCDRLDALRADVHRALGGVPLDLAAAAEQTSRLRNDPAA 1525 (3151)
T ss_pred hcCCCCcHHHHHHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCHHH
Confidence 477888899999999999999999999999999999999999988888877665443334556677888776553 24
Q ss_pred HHHHHHH
Q 002091 85 AKELTTE 91 (968)
Q Consensus 85 a~~Ll~~ 91 (968)
|+.+|++
T Consensus 1526 A~~~L~~ 1532 (3151)
T PHA03247 1526 AAELVRT 1532 (3151)
T ss_pred HHHHHHc
Confidence 6777776
No 390
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=35.86 E-value=41 Score=30.19 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHH
Q 002091 395 ERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASR 439 (968)
Q Consensus 395 ~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~ 439 (968)
+...++..+..|+..|+....+.+ .|+++.|+.+|.+++.++..
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~-l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVE-LGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHH-cCCHHHHHHHHCCCCcceeh
Confidence 345677788888888999888888 79999999999998876543
No 391
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=35.70 E-value=43 Score=32.07 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=33.3
Q ss_pred CcccccccccCCCCceecCCchh-----hhHHHHHHHHhc-CCCCCCCCCCcCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQT-----FERSAIEKWFSD-GNNLCPLTMTVLD 311 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t-----~~r~~i~~~~~~-~~~~CP~t~~~l~ 311 (968)
.+-.|=||++=-. +..-||..+ .-++|+++|++. +...||+|+++..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3456888887643 445566543 259999999975 4678999998773
No 392
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.10 E-value=1.1e+02 Score=33.00 Aligned_cols=135 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCc-hhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCcc-HHHHHHcC
Q 002091 467 LLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN-GLQMIKEG 544 (968)
Q Consensus 467 Lv~~L~~~~~~~~~~aa~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~-~~~i~~~g 544 (968)
.+..|.+.+++.+..+...+..|+... +...... ...|-.+++-+++....+-+.|+.++..+..+-.+ ...
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~----- 166 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ----- 166 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344455556666666666666654322 1111000 23566777777777788899999999988753322 222
Q ss_pred ChHHHHH-HhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002091 545 AVGPLVD-LLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN 620 (968)
Q Consensus 545 ~v~~Lv~-lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~ 620 (968)
..+.++. ++.....+..-+++.|-.+|..+..+... ..+++.|.-.+.+.++.++..++.++.
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------------~~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------------QKLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------------HHHHHHHHHHHhhhchhhhhhhhcccc
Confidence 2333443 33333323356788888899888864322 234566666666777777666555443
No 393
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=34.85 E-value=50 Score=39.46 Aligned_cols=64 Identities=8% Similarity=0.054 Sum_probs=46.5
Q ss_pred CCCCCcccccccccCCCCcee----cC---CchhhhHHHHHHHHhc-----CCCCCCCCCCcCCCCCCccCHhHHHHHHH
Q 002091 260 LEPLQSFYCPITRDVMVDPVE----TS---SGQTFERSAIEKWFSD-----GNNLCPLTMTVLDTSILRPNKTLRQSIEE 327 (968)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~----~~---~g~t~~r~~i~~~~~~-----~~~~CP~t~~~l~~~~l~pn~~l~~~I~~ 327 (968)
..+++.-.|++|..-+.+||- .+ +|+.+|-.||..|.+. -+..||+| +.-|..
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC---------------~~Ci~s 155 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC---------------EECVGS 155 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH---------------HHHhhh
Confidence 345678899999999999763 34 8999999999999763 23445555 667888
Q ss_pred HHhhccccccccc
Q 002091 328 WKDRNTMITIASM 340 (968)
Q Consensus 328 w~~~~~~~~~~~~ 340 (968)
|+.-. .+||.-
T Consensus 156 WsR~a--qTCPiD 166 (1134)
T KOG0825|consen 156 WSRCA--QTCPVD 166 (1134)
T ss_pred hhhhc--ccCchh
Confidence 98543 467654
No 394
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.69 E-value=8.8e+02 Score=29.12 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhHH------HHHHHHHH
Q 002091 40 KESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCR------AIVKRLKD 113 (968)
Q Consensus 40 ~~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~~~Sklyll~~~~------~~~~~~~~ 113 (968)
++...+..++++.+.--++||...++ .|+-...|+.-+..|..+..+.+.+... +.++.++ .+...+..
T Consensus 181 ~~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l~~ 255 (563)
T TIGR00634 181 QQKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGLGE 255 (563)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHHHH
Confidence 45557788899999999999998875 2333567777777777777777777655 2222322 45566666
Q ss_pred HHHHHHHH
Q 002091 114 TAREISQA 121 (968)
Q Consensus 114 ~~~~~~~~ 121 (968)
+.+.+...
T Consensus 256 ~~~~l~~~ 263 (563)
T TIGR00634 256 AQLALASV 263 (563)
T ss_pred HHHHHHHh
Confidence 66655554
No 395
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.73 E-value=1.4e+02 Score=28.51 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=21.6
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
-|.+|+++|.++|..+...|..+|.+-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 5899999999999999999999999876
No 396
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=33.31 E-value=75 Score=31.91 Aligned_cols=64 Identities=14% Similarity=0.364 Sum_probs=51.8
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 919 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 919 (968)
.++.++++..+++..++..|+..+.-.. .|- +.-...++.|+.+..++++.++..|..++..+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL--------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGL--------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC--------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 4677788888999999999999888887 441 112235789999999999999999999999886
No 397
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=33.25 E-value=41 Score=36.44 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=43.7
Q ss_pred CCCcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHH
Q 002091 262 PLQSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEW 328 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w 328 (968)
..+=|-||+|.+.|.-|+-= ..||.-|-.|=.+ -...||.|+.++.+. -++++...++.-
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~~---R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGNI---RCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCccccccccH---HHHHHHHHHHhc
Confidence 44668899999999999763 5699988777442 356899999988743 555555555544
No 398
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=33.17 E-value=5.1e+02 Score=29.21 Aligned_cols=135 Identities=12% Similarity=0.089 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHhcCCCCHHhHHHHHHcCC---HHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc
Q 002091 696 NEEEIASAMGILSKLPEVPQFTQWLLDAGA---LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA 772 (968)
Q Consensus 696 ~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~---l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~ 772 (968)
+..+...|+++|+.+..++++...+-+.-+ +...+..+.+++ .+..+....+++|..-..+ + .+...
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~----~~K~i~~~~l~~ls~Q~f~--~----~~~~~ 128 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPN----SPKSICTHYLWCLSDQKFS--P----KIMTS 128 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHcCCCC--C----cccch
Confidence 567788999999999887777776654433 355555555533 3455666666666644432 2 23333
Q ss_pred CChHHHHHHhh-----cCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHh-hc
Q 002091 773 GVIPKLVQLLE-----YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLL-EA 846 (968)
Q Consensus 773 g~i~~Lv~lL~-----~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~-~~ 846 (968)
..+..++..+. -++..+-.+...++.+|....+. .|. ..
T Consensus 129 ~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~-----------------------------------~M~~~~ 173 (372)
T PF12231_consen 129 DRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ-----------------------------------QMIKHA 173 (372)
T ss_pred hhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHH
Confidence 34444444444 23456777788888888743211 122 22
Q ss_pred C-ChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 847 N-AVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 847 g-~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
+ .+++++..+-+....++..|...+..+.
T Consensus 174 ~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 174 DIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 2 5677887777777777777666555554
No 399
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=33.12 E-value=1.4e+03 Score=30.99 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
.+..+++-+......+-..-+.-+++. ++..|+..+.+++..-...|...|..++.
T Consensus 447 ~e~~v~~FG~~~Y~~lF~~fds~~qqe-----Vv~~Lvthi~sg~~~ev~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 447 KEPSVREFGSHLYKYLFKEFDSYCQQE-----VVGALVTHIGSGNSQEVDAALDVLCELAE 502 (1426)
T ss_dssp SSHHHHHHHHHHHHHHHHSS-HHHHHH-----HHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccchhHHH-----HHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 456677776665555544423323444 57788888888877555688889988884
No 400
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.09 E-value=27 Score=30.73 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=20.6
Q ss_pred ccccccccCC----CCceecC-CchhhhHHHHHH
Q 002091 266 FYCPITRDVM----VDPVETS-SGQTFERSAIEK 294 (968)
Q Consensus 266 ~~cpi~~~~m----~dpv~~~-~g~t~~r~~i~~ 294 (968)
-+||-|+.=| +||++.| ||.+|-|++++.
T Consensus 10 ridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 10 RIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred ccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 4677777644 6888876 788887776654
No 401
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=32.45 E-value=9.6 Score=27.89 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=12.7
Q ss_pred cCCCCCCCCCCcCCCCCCccC
Q 002091 298 DGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 298 ~~~~~CP~t~~~l~~~~l~pn 318 (968)
.|..+||.|+..++.....++
T Consensus 17 ~g~~vC~~CG~Vl~e~~i~~~ 37 (43)
T PF08271_consen 17 RGELVCPNCGLVLEENIIDEG 37 (43)
T ss_dssp TTEEEETTT-BBEE-TTBSCC
T ss_pred CCeEECCCCCCEeecccccCC
Confidence 356678888887766555544
No 402
>PHA02862 5L protein; Provisional
Probab=32.42 E-value=44 Score=31.37 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=36.3
Q ss_pred cccccccCCCCceecCCchh-----hhHHHHHHHHhc-CCCCCCCCCCcCCCCCCccCHhHHHHHHHHHh
Q 002091 267 YCPITRDVMVDPVETSSGQT-----FERSAIEKWFSD-GNNLCPLTMTVLDTSILRPNKTLRQSIEEWKD 330 (968)
Q Consensus 267 ~cpi~~~~m~dpv~~~~g~t-----~~r~~i~~~~~~-~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~ 330 (968)
.|=||++-=.|. +-||+.+ .-+.|+++|++. +...||+|+.+..-. + ..+.+.+|.-
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik---~---~yKpf~kW~~ 66 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK---K---TYVSFKKWNW 66 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE---E---ccccHHHhhc
Confidence 467777754443 3565432 238999999974 567899999877321 1 1235778863
No 403
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=32.40 E-value=8.2e+02 Score=29.76 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=85.0
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHH
Q 002091 639 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQ 718 (968)
Q Consensus 639 g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~ 718 (968)
.+++.|..-+++.+..++..++..+-..++.-+. ..+..-.++.|-++.....+..++.+++.+++.+..
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~----~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------ 458 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESIDV----PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------ 458 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH----HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH------
Confidence 3677777777778888899998888887733332 233445677777775555677888888888888773
Q ss_pred HHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCCh
Q 002091 719 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTT 787 (968)
Q Consensus 719 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 787 (968)
.+-...+++.+.-+++.-.. .++.+.-..+.+..++... ....+.+..+.++|.++-+...+..
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~---~dp~iv~~~~~i~~~l~~~--~~~g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKT---RDPAIVMGFLRIYEALALI--IYSGVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHhh--cccceeeehhhhhhhhhhhhhcccc
Confidence 23333445555555544111 4566676777766666653 1121456667788888888776543
No 404
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=31.52 E-value=1.6e+03 Score=31.18 Aligned_cols=177 Identities=10% Similarity=0.123 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcc-cCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHH
Q 002091 520 KKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLH-HSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIF 598 (968)
Q Consensus 520 ~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~ 598 (968)
+..++.-|..++.+.-+|-+++=...-..+.+.+.. +......+...|+..|..++..--.++. ....-.+..++.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eE---L~~f~FQkefLk 1185 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREE---LANYNFQNEFMK 1185 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhh---hhchhHHHHHHH
Confidence 334444444444443344444333333334443322 2222256788888888888863221111 001112356777
Q ss_pred HHHHhhc-cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhc----cCChhHHHHHHHHHHHhccCCChh
Q 002091 599 MLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE----HDNENVRANAVKLFCCLVDDGDEA 673 (968)
Q Consensus 599 ~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~----~~~~~v~~~a~~~L~~Ls~~~~~~ 673 (968)
++..++. ..+.++++.++.++.++.... .. .++ .+.+.+..++. ..++.+...|...+..+..++-+
T Consensus 1186 Pfe~im~~s~~~eVrE~ILeCv~qmI~s~-~~----nIk--SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~- 1257 (1780)
T PLN03076 1186 PFVIVMRKSNAVEIRELIIRCVSQMVLSR-VN----NVK--SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP- 1257 (1780)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHH-Hh----hhh--cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh-
Confidence 8777555 667899999999999886421 11 222 25777777665 34578888888888777522211
Q ss_pred HHHHhhc--cccHHHHHHHh----ccCCCHHHHHHHHHHHhcC
Q 002091 674 IIREHVG--QKCLETLVTII----QSSHNEEEIASAMGILSKL 710 (968)
Q Consensus 674 ~~~~~~~--~~~i~~Lv~lL----~~~~~~~~~~~Al~~L~nL 710 (968)
.+.. .+.+..+|..| ....+.++--.|+..|+++
T Consensus 1258 ---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1258 ---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred ---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 1111 23344444444 3323344555666666644
No 405
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=31.33 E-value=21 Score=37.39 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=33.0
Q ss_pred CCCCCCcccccccccCCCC-------------cee-cCCchhhhHHHHHH-HHhc--C--CCCCCCCCCcCCC
Q 002091 259 PLEPLQSFYCPITRDVMVD-------------PVE-TSSGQTFERSAIEK-WFSD--G--NNLCPLTMTVLDT 312 (968)
Q Consensus 259 ~~~~~~~~~cpi~~~~m~d-------------pv~-~~~g~t~~r~~i~~-~~~~--~--~~~CP~t~~~l~~ 312 (968)
++.-+..|.|++|..++.- |.. .-||.-|.|.++-+ +++. | -|.||.|+.-+.+
T Consensus 155 ~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 155 SLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 3444678999999887641 222 22677777775543 3331 1 2679999988844
No 406
>PRK10869 recombination and repair protein; Provisional
Probab=31.30 E-value=9.8e+02 Score=28.65 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhH---HHHHHHHHHHHHH
Q 002091 41 ESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNC---RAIVKRLKDTARE 117 (968)
Q Consensus 41 ~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~~~Sklyll~~~---~~~~~~~~~~~~~ 117 (968)
++..+..++++.+.--++||...++ .|+-..-|..-+..|..+..+.+.+...- -++.+ ..+...+..+...
T Consensus 178 ~~~~~~~~~~d~l~fql~Ei~~~~l--~~gE~eeL~~e~~~L~n~e~i~~~~~~~~---~~L~~~~~~~~~~~l~~~~~~ 252 (553)
T PRK10869 178 QQSQERAARKQLLQYQLKELNEFAP--QPGEFEQIDEEYKRLANSGQLLTTSQNAL---QLLADGEEVNILSQLYSAKQL 252 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCcccHHHHHHHHHHH
Confidence 4456788888999999999998875 23335667777777777777777776542 22222 2455555555555
Q ss_pred HHHH
Q 002091 118 ISQA 121 (968)
Q Consensus 118 ~~~~ 121 (968)
+...
T Consensus 253 l~~~ 256 (553)
T PRK10869 253 LSEL 256 (553)
T ss_pred HHHH
Confidence 5554
No 407
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=31.20 E-value=1.2e+03 Score=29.60 Aligned_cols=126 Identities=15% Similarity=0.203 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC-ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCC
Q 002091 744 FQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG-TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSP 822 (968)
Q Consensus 744 ~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~ 822 (968)
+.++..+.-+|+++|.. ..+..+ ..+|.|++-|... ...+|.....+++.++.+
T Consensus 945 ~~vra~~vvTlakmcLa-h~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~------------------- 999 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLA-HDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS------------------- 999 (1529)
T ss_pred hHHHHHHHHHHHHHHhh-hhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH-------------------
Confidence 45677788888888875 343332 3589999988855 346666666666655521
Q ss_pred CCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCc---HHHHHHH
Q 002091 823 PPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANA---IDRMVRF 899 (968)
Q Consensus 823 ~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~---i~~L~~l 899 (968)
....-...|+.+-..|.++++-||..++.-|.+|+.-+ +.+-+| +..+..+
T Consensus 1000 ------------------YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~--------~vKw~G~Lf~Rf~l~l 1053 (1529)
T KOG0413|consen 1000 ------------------YTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG--------IVKWNGELFIRFMLAL 1053 (1529)
T ss_pred ------------------HHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh--------hhhcchhhHHHHHHHH
Confidence 11122347888888999999999999999999998211 122222 2222332
Q ss_pred hcCCChHHHHHHHHHHHHHhcC
Q 002091 900 LSSPSPKLQEKALDSVERIFRL 921 (968)
Q Consensus 900 l~~~~~~v~~~a~~~L~~l~~~ 921 (968)
-+.+++++.-|-..+..++..
T Consensus 1054 -~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1054 -LDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred -cccCHHHHHHHHHHHHHHHhh
Confidence 245677777777777766543
No 408
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=30.81 E-value=30 Score=43.35 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=37.2
Q ss_pred cccccccccC-----CCCceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 265 SFYCPITRDV-----MVDPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 265 ~~~cpi~~~~-----m~dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
.-.|.||++= .-||.+. .||.-.||.|.+-=.++|+..||+|+++..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4579999975 4467765 578889999997555678999999998875
No 409
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=30.39 E-value=6.9e+02 Score=26.59 Aligned_cols=218 Identities=13% Similarity=0.173 Sum_probs=115.3
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhc--cCCHHHHHHHHHHHHHhccCC
Q 002091 549 LVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN--LTGPNVQQRILQTFNALCRSP 626 (968)
Q Consensus 549 Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~--~~~~~~~~~al~~L~~L~~~~ 626 (968)
|-..|.+.+ +.++..|+..|..+...-... .+. ..-+..++.... -.+......++..+..|.+..
T Consensus 4 Lg~~Ltsed---~~~R~ka~~~Ls~vL~~lp~~--------~L~-~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~ 71 (262)
T PF14500_consen 4 LGEYLTSED---PIIRAKALELLSEVLERLPPD--------FLS-RQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK 71 (262)
T ss_pred hhhhhCCCC---HHHHHHHHHHHHHHHHhCCHh--------hcc-HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc
Confidence 334455443 678888888888776532110 111 222344443332 234444555566666666432
Q ss_pred ChhhHHHHHhhcCchHHHHHhhc--cCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHH
Q 002091 627 SAGNIKTTLTQCSAIPVLVQLCE--HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAM 704 (968)
Q Consensus 627 ~~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al 704 (968)
..... .. ...+..+..-.. .-....|..+..+|..|..... .... -.....+..+++.+....|+....-+.
T Consensus 72 ~~~~~--~~--~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F 145 (262)
T PF14500_consen 72 NFSPE--SA--VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR-EALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSF 145 (262)
T ss_pred CCChh--hH--HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH-HHHH-hchhHHHHHHHHHhccCCCHHHHHHHH
Confidence 21110 00 012222332222 2236678888889988873322 2221 223457788888888887877666666
Q ss_pred HHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhc-------CCCCC---CchhHHHHHHHHHHhhccCCCCHHHHHHHHHcC
Q 002091 705 GILSKLPE-VPQFTQWLLDAGALPIVLNFLKN-------GRQND---PNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 773 (968)
Q Consensus 705 ~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~-------~~~~~---~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g 773 (968)
.++..+.. -+ . ....+-+-+.+.. +.+++ -+..+++... .+.-.. ++... .-
T Consensus 146 ~l~~~i~~~~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L----~~cl~s-~~~fa-----~~ 208 (262)
T PF14500_consen 146 KLLKVILQEFD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRAL----RNCLSS-TPLFA-----PF 208 (262)
T ss_pred HHHHHHHHhcc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHH----HHHhcC-cHhhH-----HH
Confidence 66655544 11 1 2233334444332 11111 1233444333 333322 34332 34
Q ss_pred ChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 774 VIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 774 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
.+|.|++-|.++++.+|..+..+|....
T Consensus 209 ~~p~LleKL~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 209 AFPLLLEKLDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 6899999999999999999999998876
No 410
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=29.80 E-value=4.2 Score=36.07 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=17.5
Q ss_pred cccccccCC--CCceec--CCchhhhHHHHHH--HHhcCCCCCCCCCCcC
Q 002091 267 YCPITRDVM--VDPVET--SSGQTFERSAIEK--WFSDGNNLCPLTMTVL 310 (968)
Q Consensus 267 ~cpi~~~~m--~dpv~~--~~g~t~~r~~i~~--~~~~~~~~CP~t~~~l 310 (968)
.||+|.+.+ .|+... +.||+|.|-++.- -...+..+||.|+...
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp -------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EE
T ss_pred cccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEE
Confidence 599999966 577654 5699999988763 2234457899998775
No 411
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=29.60 E-value=3.9e+02 Score=23.68 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=48.0
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMA 483 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa 483 (968)
.+.+..|+.....++....+.+...|..+..++.....+.+-|++..|-++=..-++..+...-
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id 92 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEID 92 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHH
Confidence 4556677777777777788899999999999999999999999988866554444555554433
No 412
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.28 E-value=4e+02 Score=26.59 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=64.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhc-------------------CchHHHHHhhccC-ChhHH
Q 002091 597 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC-------------------SAIPVLVQLCEHD-NENVR 656 (968)
Q Consensus 597 i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~-------------------g~i~~Lv~ll~~~-~~~v~ 656 (968)
...+..++.+.++.+|..++.+|..|-.+. +..-....+. ..-..|+..+..+ +..+.
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 344556677889999999999998886542 1111111110 0122344455444 56778
Q ss_pred HHHHHHHHHhccCCChhHHHHhhccccHHHHH----HHhccCCCHHHHHHHHHHHhcCCC
Q 002091 657 ANAVKLFCCLVDDGDEAIIREHVGQKCLETLV----TIIQSSHNEEEIASAMGILSKLPE 712 (968)
Q Consensus 657 ~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv----~lL~~~~~~~~~~~Al~~L~nL~~ 712 (968)
...+++|..|....+-+. +..|.++.++ .++.+ .|.+++..++.+++.+..
T Consensus 120 ~q~lK~la~Lv~~tPY~r----L~~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHR----LPPGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHccCChhh----cCHhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 888999999983333222 1334444444 44555 566788888888877755
No 413
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=29.05 E-value=35 Score=34.13 Aligned_cols=46 Identities=13% Similarity=0.413 Sum_probs=36.0
Q ss_pred ccccccccCCCCcee-cCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 266 FYCPITRDVMVDPVE-TSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
-.|.+|+.+.---+- -.||..|-|.|+++++.+ ...||.|+.-.+|
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 469999998766554 357788999999999976 7899999765544
No 414
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=28.73 E-value=73 Score=28.38 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=24.8
Q ss_pred CCCcccccccccCCCCcee--cCCchhhhHHHHH
Q 002091 262 PLQSFYCPITRDVMVDPVE--TSSGQTFERSAIE 293 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~--~~~g~t~~r~~i~ 293 (968)
+.++=.|++|++-+.+++. .|+||.|-..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3356679999999987765 5899988887764
No 415
>PRK09169 hypothetical protein; Validated
Probab=28.20 E-value=1.9e+03 Score=31.00 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=11.7
Q ss_pred hhcCCHHHHHHHHHHHHHhc
Q 002091 512 VSRGDIQMKKVAVKALRNLS 531 (968)
Q Consensus 512 L~~~~~~~~~~a~~aL~~Ls 531 (968)
+..-++....+++++|.+.-
T Consensus 325 ~~~~~aQ~vAN~LNALSKWp 344 (2316)
T PRK09169 325 LQAMNAQAVANALNALSKWP 344 (2316)
T ss_pred hhhCCHHHHHHHHHHHhcCC
Confidence 33446666666666666654
No 416
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.19 E-value=5.1e+02 Score=31.31 Aligned_cols=185 Identities=16% Similarity=0.121 Sum_probs=103.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhcc--CCCh-hhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH
Q 002091 599 MLFSLINLTGPNVQQRILQTFNALCR--SPSA-GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII 675 (968)
Q Consensus 599 ~l~~ll~~~~~~~~~~al~~L~~L~~--~~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 675 (968)
.+..-++..+..+|.+|+..+.++-- .++. .+-.+.+.+. -...|..+|+++-+.+|-.|+.-++... ...
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~-----s~f 251 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKIT-----SKF 251 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHH-----HHH
Confidence 34445666788899999999988853 2222 1222222222 2566788999888899988887666554 112
Q ss_pred HHhhccccHHHH----HHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHH
Q 002091 676 REHVGQKCLETL----VTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 751 (968)
Q Consensus 676 ~~~~~~~~i~~L----v~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~ 751 (968)
..++-+..+..| ..-+......+++......|..+..++...-.+ ..++|.+-..|.+ ....+|-.++
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D------~se~VRvA~v 323 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHD------NSEKVRVAFV 323 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhc------cchhHHHHHH
Confidence 233333333333 333344445567777766666665544322211 1234555556666 4567888888
Q ss_pred HHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 752 GALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 752 ~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
..|..+-.. ... .+-+---+..++.-|.+.+.++.+.-+..|.+..
T Consensus 324 d~ll~ik~v---ra~-~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 324 DMLLKIKAV---RAA-KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHHHHHhh---hhh-hhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 888877643 111 1111122344566666666666666666666554
No 417
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=28.18 E-value=2.7e+02 Score=31.45 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=76.2
Q ss_pred hHHHHHhhcc-CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHh-cc-CCCHHHHHHHHHHHhcCCC-CHHh
Q 002091 641 IPVLVQLCEH-DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTII-QS-SHNEEEIASAMGILSKLPE-VPQF 716 (968)
Q Consensus 641 i~~Lv~ll~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~-~~~~~~~~~Al~~L~nL~~-~~~~ 716 (968)
.+-+-+-+.. +...-|.+|+..|..|+.... .....++. +.+..++.-. .. ..+...+..|+.+++.|+. ....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~-~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~ 289 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE-KQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTT 289 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--B
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHh-HHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccc
Confidence 3334444433 235678888899999973211 11111111 1222222211 12 2466778889998888876 3211
Q ss_pred ------------HHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc
Q 002091 717 ------------TQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY 784 (968)
Q Consensus 717 ------------~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~ 784 (968)
........++|-|. .+. ...+-++..|++.+..+-..-+++ .+ .+++|.++..|.+
T Consensus 290 ~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~----~~~piLka~aik~~~~Fr~~l~~~---~l--~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 290 KSGVTQTNELVDVVDFFSQHVLPELQ---PDV----NSHPILKADAIKFLYTFRNQLPKE---QL--LQIFPLLVNHLQS 357 (370)
T ss_dssp TTB-S-B-TTS-HHHHHHHHTCHHHH----SS-----S-HHHHHHHHHHHHHHGGGS-HH---HH--HHHHHHHHHHTTS
T ss_pred cCCcccccccccHHHHHHHHhHHHhc---ccC----CCCcchHHHHHHHHHHHHhhCCHH---HH--HHHHHHHHHHhCC
Confidence 11222222333222 111 145678999999998888653332 22 3479999999999
Q ss_pred CChHHHHHHHHHH
Q 002091 785 GTTLTKEHAATSL 797 (968)
Q Consensus 785 ~~~~v~~~Aa~aL 797 (968)
++.-|...||.++
T Consensus 358 ~~~vv~tyAA~~i 370 (370)
T PF08506_consen 358 SSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHHHH
T ss_pred CCcchhhhhhhhC
Confidence 9999999999875
No 418
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=28.11 E-value=1.3e+03 Score=29.20 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=47.8
Q ss_pred hHHHHhhccCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 002091 849 VRPLVRVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 849 i~~Lv~lL~~~~~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 920 (968)
+-.|-.+..+.-..++..++.+|..+. ++. +. -....-+..++.++.+....++++|...|.+++.
T Consensus 618 L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr-----~~-~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~ 685 (1529)
T KOG0413|consen 618 LSILQMLCRDRMVSVRKTGADSLTELMLRDPR-----LF-SLSSKWLHTLISMLNDTESDVTEHARKLIMKVLT 685 (1529)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHhhCch-----hh-hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 555556666777789999999999988 331 11 1233455678888888888999999998877753
No 419
>PRK09169 hypothetical protein; Validated
Probab=27.11 E-value=2e+03 Score=30.84 Aligned_cols=23 Identities=22% Similarity=0.021 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCccH
Q 002091 515 GDIQMKKVAVKALRNLSSVPQNG 537 (968)
Q Consensus 515 ~~~~~~~~a~~aL~~Ls~~~~~~ 537 (968)
-++....+++++|.+....+..+
T Consensus 286 ~~~Q~vAN~LNALSKwp~~~~cr 308 (2316)
T PRK09169 286 LDPQGVANALNALSKWPDTEACR 308 (2316)
T ss_pred cCHHHHHHHHHHHHhCCCchHHH
Confidence 36667777777777776544443
No 420
>PRK00420 hypothetical protein; Validated
Probab=27.10 E-value=34 Score=30.98 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=18.6
Q ss_pred ccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
-.||.|+..+... ..|..+||.|++.+
T Consensus 24 ~~CP~Cg~pLf~l------------------k~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 24 KHCPVCGLPLFEL------------------KDGEVVCPVHGKVY 50 (112)
T ss_pred CCCCCCCCcceec------------------CCCceECCCCCCee
Confidence 4599998755432 14677899998755
No 421
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.99 E-value=31 Score=35.95 Aligned_cols=41 Identities=20% Similarity=0.436 Sum_probs=27.6
Q ss_pred CcccccccccCCCCceecCC----chhhh----HHHHHHHHhcCCCCCC
Q 002091 264 QSFYCPITRDVMVDPVETSS----GQTFE----RSAIEKWFSDGNNLCP 304 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~----g~t~~----r~~i~~~~~~~~~~CP 304 (968)
.-++|-+|.|=+.|-..+.| +|.|| |.+|++--..|.-.||
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCP 315 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCP 315 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCC
Confidence 45999999999999877655 67887 5555543223333444
No 422
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.84 E-value=23 Score=36.37 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=34.2
Q ss_pred CCce-ecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHH
Q 002091 276 VDPV-ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWK 329 (968)
Q Consensus 276 ~dpv-~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~ 329 (968)
.||. +++|+|.||-.|...-. ...||+|++++.-..+.+| |...|..+.
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS--LPTDIKSYF 64 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc--cchhHHHHc
Confidence 4554 57899999999865432 2389999999777777666 444554443
No 423
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.74 E-value=1.9e+02 Score=24.82 Aligned_cols=67 Identities=12% Similarity=0.251 Sum_probs=47.7
Q ss_pred hhcCChHHHHhhcc-CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHh----cCCChHHHHHHHHHHHH
Q 002091 844 LEANAVRPLVRVLE-DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFL----SSPSPKLQEKALDSVER 917 (968)
Q Consensus 844 ~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~~ 917 (968)
.+...+.|+..++. ..+.++++..+.++..+... +..-..+ |++.+..++ .++++.+...|..++..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~------~~~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQS------RGENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH------hHHHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 45678999999975 45788999999999999821 1122333 488877777 34577787777776653
No 424
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=26.48 E-value=1.6e+02 Score=25.84 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=44.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh-hhhh
Q 002091 36 VLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECS-KRNK 97 (968)
Q Consensus 36 ~~~~~~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~-~~Sk 97 (968)
..+-|+|=..|++++.-..|+++.+...+. ..+.-....+.-...-++|+.|+..-. .|++
T Consensus 8 ~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V-lt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~ 69 (94)
T cd08329 8 LSLIRKNRMALFQHLTSVLPILDSLLSANV-ITEQEYDVIKQKTQTPLQARELIDTVLVKGNA 69 (94)
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHcCCChHHHHHHHHHHHHhhhHH
Confidence 345688888999999779999999998875 444444555555556689999988755 4443
No 425
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.34 E-value=42 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
|.-+|.||-|+..+.-..-... .....||.|+..+
T Consensus 2 p~Y~y~C~~Cg~~fe~~~~~~~--------------~~~~~CP~Cg~~~ 36 (41)
T smart00834 2 PIYEYRCEDCGHTFEVLQKISD--------------DPLATCPECGGDV 36 (41)
T ss_pred CCEEEEcCCCCCEEEEEEecCC--------------CCCCCCCCCCCcc
Confidence 3368899877776553322211 1345799998754
No 426
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.98 E-value=8e+02 Score=25.90 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=66.1
Q ss_pred hhcCchHHHHHhhccCChh--------HHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCC-CHHHHHHHHHH
Q 002091 636 TQCSAIPVLVQLCEHDNEN--------VRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH-NEEEIASAMGI 706 (968)
Q Consensus 636 ~~~g~i~~Lv~ll~~~~~~--------v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~~Al~~ 706 (968)
++..+.+.|+++++.++.. +.+....+|+.+ ..|.++.|.+++.+.. +.-++.+|+.+
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv-------------~~G~~~~L~~li~~~~~~~yvR~aa~~a 136 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV-------------GDGDIEPLKELIEDPDADEYVRMAAISA 136 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH-------------hCCCHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3346899999999766531 223333344444 3466777777777764 45577888999
Q ss_pred HhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCC-CHHHHHHHHHcCChHH
Q 002091 707 LSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT-NLEWQKRAAEAGVIPK 777 (968)
Q Consensus 707 L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~-~~~~~~~~~~~g~i~~ 777 (968)
|..++. .+..++.++ ..+..++...-.. .++.+-..-+..++.|.... -+.++ .+.+.|.++.
T Consensus 137 L~~l~~~~~~~Re~vi-----~~f~~ll~~~l~~--~~~~~~~~Lv~~~~dL~~~EL~~~I~-~~f~~~lVd~ 201 (249)
T PF06685_consen 137 LAFLVHEGPISREEVI-----QYFRELLNYFLER--NPSFLWGSLVADICDLYPEELLPEIR-KAFEDGLVDP 201 (249)
T ss_pred HHHHHHcCCCCHHHHH-----HHHHHHHHHHhcc--CchHHHHHHHHHHHhcCHHHhHHHHH-HHHHcCCCCc
Confidence 999888 666666553 3444444331100 22233344444445444321 12233 3345666655
No 427
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=25.40 E-value=83 Score=28.28 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHH
Q 002091 480 MRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKK 521 (968)
Q Consensus 480 ~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 521 (968)
......+..|+..++....+++.|+++.|+.||.+++.++..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345566777888888888899999999999999988766543
No 428
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.36 E-value=1.5e+02 Score=28.06 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=53.6
Q ss_pred CChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhc-CCChH---HHHHHHHHHHHH
Q 002091 847 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLS-SPSPK---LQEKALDSVERI 918 (968)
Q Consensus 847 g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~-~~~~~---v~~~a~~~L~~l 918 (968)
.++..|..=|.++++.++..|+..|-.+. +.. ......+.....+..|..++. ..... |+++++.++...
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg--~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCG--PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH--HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 37788888888999999999999999988 321 256677777788888999884 33333 899998888653
No 429
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.29 E-value=8.2e+02 Score=25.81 Aligned_cols=82 Identities=9% Similarity=0.068 Sum_probs=53.0
Q ss_pred ccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhcc
Q 002091 680 GQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT 758 (968)
Q Consensus 680 ~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~ 758 (968)
+..+.+.++++++.+.+. --..++-... +-.-.-+.+-.|-++.|.+++.++. .+..+|..|+.+|..++
T Consensus 71 e~~A~~~li~l~~~~~~~-----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~----~~~yvR~aa~~aL~~l~ 141 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDF-----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPD----ADEYVRMAAISALAFLV 141 (249)
T ss_pred hhhhHHHHHHHHcCCcch-----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCc----HHHHHHHHHHHHHHHHH
Confidence 557899999999765331 1122232221 2222223345677889999998854 56789999999999999
Q ss_pred CCCCHHHHHHHHH
Q 002091 759 APTNLEWQKRAAE 771 (968)
Q Consensus 759 ~~~~~~~~~~~~~ 771 (968)
.. .+..|+.+.+
T Consensus 142 ~~-~~~~Re~vi~ 153 (249)
T PF06685_consen 142 HE-GPISREEVIQ 153 (249)
T ss_pred Hc-CCCCHHHHHH
Confidence 87 5666666543
No 430
>PRK01343 zinc-binding protein; Provisional
Probab=24.99 E-value=74 Score=24.91 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=18.7
Q ss_pred cccccccccCCCCceecCCchhhhHHHHHHHHhcCC
Q 002091 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGN 300 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~ 300 (968)
...||||+..+..+..--|....-.--+-+|+..++
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~Y 44 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSGSY 44 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCCCc
Confidence 467999998765443222222222223446776543
No 431
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=24.79 E-value=7.1e+02 Score=24.88 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 606 LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 606 ~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
..++.+...++++|..|.....-...+.-+.. ..+..+..++.+.|.+++..+..++..+.
T Consensus 113 E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 113 EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred ccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44566777788888888754222221111111 13555566777889999999999888886
No 432
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.77 E-value=16 Score=26.57 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=18.3
Q ss_pred CCcccccccccCCCCceecCCchhhhH-HHHHHHHhcCCCCCCCCCC
Q 002091 263 LQSFYCPITRDVMVDPVETSSGQTFER-SAIEKWFSDGNNLCPLTMT 308 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r-~~i~~~~~~~~~~CP~t~~ 308 (968)
.-+|.|+ .||++|+. ..|.+ .....||.|+.
T Consensus 3 ~Yey~C~------------~Cg~~fe~~~~~~~---~~~~~CP~Cg~ 34 (42)
T PF09723_consen 3 IYEYRCE------------ECGHEFEVLQSISE---DDPVPCPECGS 34 (42)
T ss_pred CEEEEeC------------CCCCEEEEEEEcCC---CCCCcCCCCCC
Confidence 3578885 45555552 22222 23568999987
No 433
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=24.56 E-value=35 Score=25.57 Aligned_cols=29 Identities=28% Similarity=0.745 Sum_probs=17.3
Q ss_pred ceecCCchh----h-hHHHHHHHHh-cCCCCCCCC
Q 002091 278 PVETSSGQT----F-ERSAIEKWFS-DGNNLCPLT 306 (968)
Q Consensus 278 pv~~~~g~t----~-~r~~i~~~~~-~~~~~CP~t 306 (968)
|.+.||+-+ | =+.|+++|+. .+..+|+++
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 677777533 2 3889999997 466778875
No 434
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.54 E-value=57 Score=22.28 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=6.9
Q ss_pred CCCCCCCCCc
Q 002091 300 NNLCPLTMTV 309 (968)
Q Consensus 300 ~~~CP~t~~~ 309 (968)
...||+|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4578888753
No 435
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=23.35 E-value=77 Score=20.74 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhc
Q 002091 788 LTKEHAATSLARFS 801 (968)
Q Consensus 788 ~v~~~Aa~aL~nl~ 801 (968)
.+|..|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999985
No 436
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=23.32 E-value=5.2e+02 Score=25.83 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=49.2
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP 922 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 922 (968)
.++.+++=|.+.+...+-.|..+...++.....+...-.+ .+.+.+|.+.+++.++++...++.+|..|....
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl--PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL--PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 4566666666667777777778888877211111222222 234777888889999999999999999995443
No 437
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=23.31 E-value=3.6e+02 Score=22.92 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002091 40 KESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECS 93 (968)
Q Consensus 40 ~~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~ 93 (968)
+++=..|+.++.-+.|+++.+...+. ..+........-...-++|+.|+...-
T Consensus 4 ~~~r~~Li~~v~~v~~ilD~L~~~~V-it~e~~~~I~a~~T~~~kar~Lld~l~ 56 (82)
T cd08330 4 DQHREALIARVTNVDPILDKLHGKKV-ITQEQYSEVRAEKTNQEKMRKLFSFVR 56 (82)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCCC-CCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 56667899999999999999997664 555555555555555678888887654
No 438
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=23.22 E-value=3.1e+02 Score=30.34 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhccCchhhHHHhhcC--chHHHHHhhhcC---CHHHHHHHHHHHHHhcCCCccHHHHH
Q 002091 477 SVKMRMATTLAEMELTDHHKASLLEGN--VLGPLLHLVSRG---DIQMKKVAVKALRNLSSVPQNGLQMI 541 (968)
Q Consensus 477 ~~~~~aa~~L~~L~~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~~~~~a~~aL~~Ls~~~~~~~~i~ 541 (968)
.+|..|...+..+.........+...+ .+..|+++++.+ ...++..|+.+|..|+........++
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 356667777777766666666677644 999999999875 35899999999999997554444443
No 439
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.84 E-value=1e+03 Score=29.60 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=70.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccCCch--hHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc-h-hhH
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSFSDD--NVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-H-HKA 497 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~--n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~-~-~~~ 497 (968)
....+...+.+++.......+.++.++..-+. .+. ....+++-....+..-.........+|..++..+ + .+.
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566666777777777777777777753221 111 2222233333333333445667778888886544 3 333
Q ss_pred HHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC
Q 002091 498 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
.+.+.++...++.++=+++.++...|...|+....
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 44568999999999999999999999999999875
No 440
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=22.80 E-value=5e+02 Score=30.64 Aligned_cols=170 Identities=19% Similarity=0.238 Sum_probs=93.8
Q ss_pred cchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhc-----------cCCHHHHHHHHHHHHHhccCCChh
Q 002091 561 SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-----------LTGPNVQQRILQTFNALCRSPSAG 629 (968)
Q Consensus 561 ~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~-----------~~~~~~~~~al~~L~~L~~~~~~~ 629 (968)
.++...|-..|..+... ++....+..|+.+.. ..++.+|..++..|..-.....
T Consensus 251 ~~V~~~ae~~LKr~~~~-------------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~-- 315 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVS-------------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAAT-- 315 (501)
T ss_pred chHHHHHHHHHhhcCCC-------------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHh--
Confidence 56777777777777653 445567777777665 3567788877777755321100
Q ss_pred hHHHHHhhcCchHHHHHhhccC--ChhHHHHHHHHH---HHhccCCChhHHHHhhccccHHHHHHHhc-------cCCCH
Q 002091 630 NIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLF---CCLVDDGDEAIIREHVGQKCLETLVTIIQ-------SSHNE 697 (968)
Q Consensus 630 ~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L---~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~-------~~~~~ 697 (968)
.....+..+..-+.+. +..++..+...+ ........+.... .+.......+..++. ...+.
T Consensus 316 ------~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~~~~~~~~~~~~ 388 (501)
T PF13001_consen 316 ------SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQDSSSQSNSSEDI 388 (501)
T ss_pred ------CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCccccccccccCCCcccH
Confidence 0112233333334444 456776776666 4444233333222 223333444444442 11356
Q ss_pred HHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCC
Q 002091 698 EEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP 760 (968)
Q Consensus 698 ~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~ 760 (968)
+.+..+-.+||.|+. .+... .-+-+.+..|.+-|.+ ...+++-..-.+|..++..
T Consensus 389 ~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~------~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 389 ELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLED------ESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhC------cchHHHHHHHHHHHHHHHH
Confidence 778888899999988 55432 1123456667777754 4455666666666666643
No 441
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.28 E-value=3.9e+02 Score=31.23 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=58.8
Q ss_pred CHHHHHHHHHcCChHHHHHHhhc-CChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccc
Q 002091 762 NLEWQKRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESS 840 (968)
Q Consensus 762 ~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~ 840 (968)
.....+.+.+.++++.|+.+|.. .++.++..|+..|+.+..-+.+-.... +.++...+-.
T Consensus 51 ~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~-------------------~~~igpn~L~ 111 (475)
T PF04499_consen 51 PTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNE-------------------QSSIGPNPLT 111 (475)
T ss_pred hHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc-------------------ccCCCccHHH
Confidence 34566777789999999999984 477899999999988875443211100 0111122234
Q ss_pred hHHhhcCChHHHHhhccC-CChhhhHHHHHHHHhhh
Q 002091 841 FCLLEANAVRPLVRVLED-PDHGACEASLDALVTLI 875 (968)
Q Consensus 841 ~~l~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~~L~ 875 (968)
..|+....|..|++..-. ........++..+..|.
T Consensus 112 r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 112 RQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred HHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 445666677777764442 33445556666676666
No 442
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=22.23 E-value=59 Score=31.76 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=19.2
Q ss_pred cccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
..+||+|+-+..|. . -..||+|+.+-
T Consensus 134 ~~vC~vCGy~~~ge--~------------------P~~CPiCga~k 159 (166)
T COG1592 134 VWVCPVCGYTHEGE--A------------------PEVCPICGAPK 159 (166)
T ss_pred EEEcCCCCCcccCC--C------------------CCcCCCCCChH
Confidence 68999998777762 2 35799998653
No 443
>PLN02400 cellulose synthase
Probab=22.04 E-value=52 Score=41.55 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=36.7
Q ss_pred CcccccccccC-----CCCceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 264 QSFYCPITRDV-----MVDPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 264 ~~~~cpi~~~~-----m~dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
..=+|.||++= .-+|-+. .||.-.||.|.+-=-++|+..||+|+.+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34489999974 3467665 478889999996444578899999998874
No 444
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.00 E-value=1.6e+03 Score=27.99 Aligned_cols=127 Identities=19% Similarity=0.248 Sum_probs=69.0
Q ss_pred HHHhhccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcC--CCHHHHHHHHHHHHhccC---Cc--hhHHH
Q 002091 385 IVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS--DDNQASRDAQELLENLSF---SD--DNVVQ 457 (968)
Q Consensus 385 lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s--~~~~~~~~a~~~L~~Ls~---~~--~n~~~ 457 (968)
+.+.++.++..++.|=..|..+.. + +|..-.|+.++.. -|+.++..|+..++|-.+ .+ ++-..
T Consensus 11 l~qTl~pdps~rk~aEr~L~~~e~---------q-~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 11 LLQTLSPDPSVRKPAERALRSLEG---------Q-QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred HHhcCCCCCccCchHHHHHHHhcc---------C-CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 344444445444444344443322 2 4666677777753 378888889999998864 11 11122
Q ss_pred HHh--CCchHH-HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHH
Q 002091 458 MAK--ANYFKH-LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAV 524 (968)
Q Consensus 458 i~~--~g~v~~-Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 524 (968)
|.+ ...+.. ++.++-+.+..++..--.+|+.++..|--+. -+..++-|+.-++++|...-...+
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k---WptLl~dL~~~ls~~D~~~~~gVL 147 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK---WPTLLPDLVARLSSGDFNVINGVL 147 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh---hHHHHHHHHhhccccchHHHHHHH
Confidence 222 122333 3444444456777777777777765542221 144667777777777654444333
No 445
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=21.70 E-value=59 Score=36.04 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=22.3
Q ss_pred ecCCchhhhH-----HHHHHHHhc------------CCCCCCCCCCcCC
Q 002091 280 ETSSGQTFER-----SAIEKWFSD------------GNNLCPLTMTVLD 311 (968)
Q Consensus 280 ~~~~g~t~~r-----~~i~~~~~~------------~~~~CP~t~~~l~ 311 (968)
.-+|++.||| +|+-+||.. |..+||.|+.++.
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 3457777765 678899842 3457999988764
No 446
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.61 E-value=5e+02 Score=29.26 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhh----cCCCCCCchhHHHHHHHHHHhhccCCCCH------H
Q 002091 696 NEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK----NGRQNDPNRFQVVENAVGALRRFTAPTNL------E 764 (968)
Q Consensus 696 ~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~----~~~~~~~~~~~v~e~a~~aL~~L~~~~~~------~ 764 (968)
....+.+|...|..|+. .......++ ...+-.++. +++ .+..-+..|+..+..++..+.. .
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~----~~w~~KD~Al~Li~ala~k~~t~~~Gvt~ 295 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPS----NNWRSKDGALYLIGALASKGSTTKSGVTQ 295 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TT----T-HHHHHHHHHHHHHHHBSS--BTTB-S-
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCc----ccHHHHHHHHHHHHHHHhhhccccCCccc
Confidence 34466778888888876 222222221 123333333 222 3456788899988888876311 0
Q ss_pred -----HHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCccc
Q 002091 765 -----WQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIES 839 (968)
Q Consensus 765 -----~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~ 839 (968)
....+....++|.|. --.+..|-++..|.+.+..+...- +
T Consensus 296 ~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-------------------------------~--- 340 (370)
T PF08506_consen 296 TNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-------------------------------P--- 340 (370)
T ss_dssp B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----------------------------------
T ss_pred ccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-------------------------------C---
Confidence 224555666777665 212346789999999998887311 0
Q ss_pred chHHhhcCChHHHHhhccCCChhhhHHHHHHH
Q 002091 840 SFCLLEANAVRPLVRVLEDPDHGACEASLDAL 871 (968)
Q Consensus 840 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL 871 (968)
.. .-.++++.+++.|.+++..|.-.|+.|+
T Consensus 341 ~~--~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 KE--QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HH--HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 01 1124899999999999888888777764
No 447
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=21.45 E-value=1e+03 Score=25.40 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=89.8
Q ss_pred CchHHHHHHHhcC--CHHHHHHHHHHHHHhccCch--------hhHHHhhcCchHHHHHhhhcCC----HHHHHHHHHHH
Q 002091 462 NYFKHLLQRLSAG--PESVKMRMATTLAEMELTDH--------HKASLLEGNVLGPLLHLVSRGD----IQMKKVAVKAL 527 (968)
Q Consensus 462 g~v~~Lv~~L~~~--~~~~~~~aa~~L~~L~~~~~--------~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~aL 527 (968)
|.++.+..++-.| +...-+.+..+|..|...++ .|..+.=.+.+|.++.-+.+++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 5666666665555 34455666777777754332 2322222345666666665555 13455666788
Q ss_pred HHhcCCCccHHHHHHcCChHHHHHHhcccCC-CCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhcc
Q 002091 528 RNLSSVPQNGLQMIKEGAVGPLVDLLLHHSS-SSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL 606 (968)
Q Consensus 528 ~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~ 606 (968)
..+|.... .+.+..++.....+.- +..+....++..|..-.. + . .....+..+++++.+
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P--~----------~~~~~l~~Ll~lL~n 199 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-P--D----------HEFQILTFLLGLLEN 199 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-c--h----------hHHHHHHHHHHHHhC
Confidence 88773211 1123333333332221 112233333333333211 1 0 123456778899999
Q ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC
Q 002091 607 TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD 651 (968)
Q Consensus 607 ~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~ 651 (968)
+.+.++...+.+|..+-...+... . ...+.+..|+++++.+
T Consensus 200 ~~~w~~~~~L~iL~~ll~~~d~~~--~--~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 200 GPPWLRRKTLQILKVLLPHVDMRS--P--HGADLISPLLRLLQTD 240 (262)
T ss_pred CcHHHHHHHHHHHHHHhccccCCC--C--cchHHHHHHHHHhCCc
Confidence 999999999999998875433221 1 2234678888888764
No 448
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.42 E-value=33 Score=29.94 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=17.4
Q ss_pred CCCCCCCCCCcCCCCCCccCHhH
Q 002091 299 GNNLCPLTMTVLDTSILRPNKTL 321 (968)
Q Consensus 299 ~~~~CP~t~~~l~~~~l~pn~~l 321 (968)
|.+.||.|+.+++..-+.-|.+|
T Consensus 48 G~t~CP~Cg~~~e~~fvva~~aL 70 (115)
T COG1885 48 GSTSCPKCGEPFESAFVVANTAL 70 (115)
T ss_pred ccccCCCCCCccceeEEEeccee
Confidence 56789999999988766666543
No 449
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=76 Score=35.91 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=25.1
Q ss_pred cccccccc-cCCCC---ceecCCchhhhHHHHHHHHh
Q 002091 265 SFYCPITR-DVMVD---PVETSSGQTFERSAIEKWFS 297 (968)
Q Consensus 265 ~~~cpi~~-~~m~d---pv~~~~g~t~~r~~i~~~~~ 297 (968)
...|+||. +.+.. ..+..|||.||..|..+++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 57899999 44332 22567999999999999986
No 450
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.22 E-value=65 Score=22.24 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=7.9
Q ss_pred ccccccccCCCC
Q 002091 266 FYCPITRDVMVD 277 (968)
Q Consensus 266 ~~cpi~~~~m~d 277 (968)
+.|++|+.++..
T Consensus 3 ~~C~~CG~i~~g 14 (34)
T cd00729 3 WVCPVCGYIHEG 14 (34)
T ss_pred EECCCCCCEeEC
Confidence 567777776553
No 451
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=21.18 E-value=66 Score=20.61 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=6.7
Q ss_pred CCCCCCCCCCcC
Q 002091 299 GNNLCPLTMTVL 310 (968)
Q Consensus 299 ~~~~CP~t~~~l 310 (968)
+..+||.|+.+|
T Consensus 15 ~~~fC~~CG~~L 26 (26)
T PF13248_consen 15 DAKFCPNCGAKL 26 (26)
T ss_pred ccccChhhCCCC
Confidence 345666666543
No 452
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.12 E-value=95 Score=25.21 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=25.4
Q ss_pred chhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccC
Q 002091 284 GQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 284 g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn 318 (968)
-+|||..|-+.-+ +..||-|+-.|......|-
T Consensus 28 EcTFCadCae~~l---~g~CPnCGGelv~RP~RPa 59 (84)
T COG3813 28 ECTFCADCAENRL---HGLCPNCGGELVARPIRPA 59 (84)
T ss_pred eeehhHhHHHHhh---cCcCCCCCchhhcCcCChH
Confidence 5799999999776 5699999988866656664
No 453
>PRK03922 hypothetical protein; Provisional
Probab=20.90 E-value=34 Score=30.29 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=16.1
Q ss_pred CCCCCCCCCCcCCCCCCccCH
Q 002091 299 GNNLCPLTMTVLDTSILRPNK 319 (968)
Q Consensus 299 ~~~~CP~t~~~l~~~~l~pn~ 319 (968)
|...||.|++++++.-+..|.
T Consensus 48 G~~~cP~cge~~~~afvvA~t 68 (113)
T PRK03922 48 GLTICPKCGEPFDSAFVVADT 68 (113)
T ss_pred CcccCCCCCCcCCcEEEEecc
Confidence 567899999999887666654
No 454
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.86 E-value=71 Score=24.60 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=8.1
Q ss_pred CcccccccccC
Q 002091 264 QSFYCPITRDV 274 (968)
Q Consensus 264 ~~~~cpi~~~~ 274 (968)
+-+.||+|+.=
T Consensus 3 ~Wi~CP~CgnK 13 (55)
T PF14205_consen 3 EWILCPICGNK 13 (55)
T ss_pred eEEECCCCCCc
Confidence 35789999843
No 455
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=20.80 E-value=27 Score=21.20 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=8.5
Q ss_pred ccccccccCCCCc
Q 002091 266 FYCPITRDVMVDP 278 (968)
Q Consensus 266 ~~cpi~~~~m~dp 278 (968)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4677777766655
No 456
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=20.80 E-value=1e+03 Score=25.30 Aligned_cols=186 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC---------
Q 002091 462 NYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS--------- 532 (968)
Q Consensus 462 g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~--------- 532 (968)
+.+..|.+.|+..++..+ .++..|+.. .+++.+.||.|+..=. ++.+-..+++.|.+|+.
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~~--------~iv~~DLiPiL~~~~~--~~~l~~~~l~LLV~LT~P~~~~~~~~ 81 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGEW--------NIVQKDLIPILISYKD--DDKLFLACLRLLVNLTWPIELLVESQ 81 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHHh--------chhhhhHHHHHHhccC--chHHHHHHHHHHHHhCCCHHHhccCC
Q ss_pred ----------------CCccHHHHHHcCChHHHHHHh--------cccCCCCcchHHHHHHHHHHhhcCcccccCCCCcc
Q 002091 533 ----------------VPQNGLQMIKEGAVGPLVDLL--------LHHSSSSSSLREETATAIMHLAVSTMYQESSQTPV 588 (968)
Q Consensus 533 ----------------~~~~~~~i~~~g~v~~Lv~lL--------~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~ 588 (968)
-...+..+.+.+++.++++++ .+.+.....+.+..+..+.|+..-++....
T Consensus 82 ~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~----- 156 (266)
T PF04821_consen 82 PKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSA----- 156 (266)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCccc-----
Q ss_pred ccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC-ChhHHHHHHHHHHHhc
Q 002091 589 TLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLV 667 (968)
Q Consensus 589 ~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls 667 (968)
-...+ .+...+...+++|.. .|+...|+.++.+. ...-....+.+++.|-
T Consensus 157 -~~~~~------------~~~~~~d~li~~l~~----------------~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~ 207 (266)
T PF04821_consen 157 -SKRSD------------EDSSLHDQLIWALFE----------------SGVLDLLLTLASSPQESDFNLLLLEIIYLLF 207 (266)
T ss_pred -ccccc------------hhHHHHHHHHHHHHH----------------cCHHHHHHHHHhCccccchhhHHHHHHHHHH
Q ss_pred cCCChhHHHHhhcccc-------HHHHHHHhc
Q 002091 668 DDGDEAIIREHVGQKC-------LETLVTIIQ 692 (968)
Q Consensus 668 ~~~~~~~~~~~~~~~~-------i~~Lv~lL~ 692 (968)
...+++.......... -..|..+++
T Consensus 208 k~~~p~~L~~~~~~~~~~e~~~d~~~L~~l~~ 239 (266)
T PF04821_consen 208 KGQDPESLASAQPQRSTSESSRDEEELQSLLK 239 (266)
T ss_pred cCCCHHHHhhccccccccccCCCHHHHHHHHH
No 457
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=20.73 E-value=3.2e+02 Score=23.30 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHH--HHHHHHHHhhcCCCCCcHHHHHHHHH-HHHHHHHHHHHHHHhh-hhhh
Q 002091 39 KKESFKELAAYLE--RIVPVLKELNKRDLSHSEGLNSAIEI-LNREIKGAKELTTECS-KRNK 97 (968)
Q Consensus 39 ~~~~~~~l~r~~~--~l~~lleel~~~~~~~~~~~~~~l~~-L~~~l~~a~~Ll~~c~-~~Sk 97 (968)
+|++-..|++.+. .+.++|+++.+.+. +...-...+.. -....++|+.|+.+.. .|+.
T Consensus 2 ~~~~r~~~i~~l~~~~i~~llD~Ll~~~V-l~~~E~e~i~~~~~t~~dkar~Lid~v~~KG~~ 63 (83)
T cd08325 2 LKEKRVKFIESVGKGVINGLLDDLLEKNV-LNEEEMEKIKEENNTIMDKARVLVDSVTEKGQE 63 (83)
T ss_pred ccchHHHHHHHhhHhhHHHHHHHHHHcCC-CCHHHHHHHHhccCCHHHHHHHHHHHHHHHhHH
Confidence 4555667777774 78899999998875 44333343433 3346899999999877 4543
No 458
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.60 E-value=5.9e+02 Score=28.37 Aligned_cols=110 Identities=7% Similarity=0.102 Sum_probs=56.9
Q ss_pred hHHHHHHHhcC-------CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhc----------CCHHHHHHHHHH
Q 002091 464 FKHLLQRLSAG-------PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR----------GDIQMKKVAVKA 526 (968)
Q Consensus 464 v~~Lv~~L~~~-------~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~a 526 (968)
+|.++..+..+ +..........+..|..++.......=.-.+|.++.++-. +.-.+|..|+..
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 45555555433 3344445556666666666544433333467887766522 124789999999
Q ss_pred HHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHh
Q 002091 527 LRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL 574 (968)
Q Consensus 527 L~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L 574 (968)
|..++..-.+.-.-+..-+...+.+.+.+.... .....-|+..|..+
T Consensus 292 l~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~-~~~~YGAi~GL~~l 338 (343)
T cd08050 292 LAQICRKFSTSYNTLQPRITRTLLKALLDPKKP-LTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCC-cchhhHHHHHHHHh
Confidence 999983111111112222334566666654321 23345555555554
Done!