Query 002091
Match_columns 968
No_of_seqs 562 out of 3802
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 11:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdh_A Beta-catenin; beta-cate 100.0 1.4E-39 4.7E-44 387.1 38.7 503 379-918 16-528 (529)
2 2z6h_A Catenin beta-1, beta-ca 100.0 3.2E-38 1.1E-42 383.7 43.1 531 379-951 13-557 (644)
3 3now_A UNC-45 protein, SD10334 100.0 8.5E-39 2.9E-43 383.4 37.0 485 391-924 259-786 (810)
4 2z6g_A B-catenin; FULL-length, 100.0 4.2E-38 1.4E-42 388.3 44.3 527 379-948 149-690 (780)
5 3ul1_B Importin subunit alpha- 100.0 3.9E-38 1.3E-42 371.2 39.3 413 421-923 57-481 (510)
6 1jdh_A Beta-catenin; beta-cate 100.0 1.6E-37 5.3E-42 369.4 41.2 481 420-958 16-528 (529)
7 3tpo_A Importin subunit alpha- 100.0 2.9E-37 9.8E-42 365.9 40.2 413 421-923 76-500 (529)
8 3now_A UNC-45 protein, SD10334 100.0 6.6E-38 2.3E-42 375.7 34.3 444 379-875 289-781 (810)
9 2z6g_A B-catenin; FULL-length, 100.0 6.3E-37 2.2E-41 377.9 43.4 519 379-963 114-666 (780)
10 2z6h_A Catenin beta-1, beta-ca 100.0 1.2E-36 4.3E-41 369.6 42.5 484 420-962 13-529 (644)
11 4b8j_A Importin subunit alpha- 100.0 4.6E-34 1.6E-38 339.3 42.5 411 421-923 74-499 (528)
12 1wa5_B Importin alpha subunit; 100.0 1.4E-33 4.7E-38 335.3 42.0 411 420-923 86-513 (530)
13 3l6x_A Catenin delta-1; cateni 100.0 5.5E-34 1.9E-38 331.3 35.5 388 379-777 47-492 (584)
14 1xm9_A Plakophilin 1; armadill 100.0 1.8E-34 6.1E-39 334.6 29.9 409 422-925 3-454 (457)
15 3l6x_A Catenin delta-1; cateni 100.0 2.6E-33 8.7E-38 325.7 33.9 418 420-932 47-488 (584)
16 2jdq_A Importin alpha-1 subuni 100.0 2.6E-32 8.8E-37 317.3 37.3 410 422-923 21-446 (450)
17 3ul1_B Importin subunit alpha- 100.0 2.3E-32 8E-37 321.9 33.8 403 503-958 57-476 (510)
18 1xm9_A Plakophilin 1; armadill 100.0 5.1E-32 1.8E-36 314.0 32.7 370 381-760 3-450 (457)
19 3tpo_A Importin subunit alpha- 100.0 1.7E-31 6E-36 316.2 35.7 403 503-958 76-495 (529)
20 3nmz_A APC variant protein; pr 100.0 4.7E-32 1.6E-36 308.8 26.6 367 421-804 32-452 (458)
21 3nmz_A APC variant protein; pr 100.0 1.5E-31 5E-36 304.8 26.1 365 464-875 34-449 (458)
22 1wa5_B Importin alpha subunit; 100.0 4.9E-30 1.7E-34 304.7 39.3 408 460-961 85-511 (530)
23 4b8j_A Importin subunit alpha- 100.0 7.1E-30 2.4E-34 303.2 39.2 415 379-875 73-495 (528)
24 2jdq_A Importin alpha-1 subuni 100.0 1.6E-28 5.5E-33 285.3 34.7 411 381-875 21-442 (450)
25 3nmw_A APC variant protein; AR 99.9 2.9E-26 9.9E-31 253.8 22.6 269 477-805 47-337 (354)
26 3nmw_A APC variant protein; AR 99.9 1.6E-25 5.5E-30 247.8 22.9 266 394-669 47-335 (354)
27 3opb_A SWI5-dependent HO expre 99.9 1.4E-22 4.9E-27 237.9 28.9 432 394-875 227-727 (778)
28 3opb_A SWI5-dependent HO expre 99.9 2.5E-22 8.4E-27 235.9 25.6 397 379-802 254-728 (778)
29 4hxt_A De novo protein OR329; 99.9 2.4E-21 8.2E-26 205.7 25.1 241 503-805 2-244 (252)
30 4hxt_A De novo protein OR329; 99.9 1.5E-21 5.3E-26 207.2 23.3 239 421-670 2-243 (252)
31 4db8_A Armadillo-repeat protei 99.9 3.7E-21 1.3E-25 204.6 19.6 237 420-667 11-250 (252)
32 4db8_A Armadillo-repeat protei 99.9 8.3E-21 2.8E-25 201.9 21.9 238 502-801 11-250 (252)
33 3tt9_A Plakophilin-2; cell adh 99.8 6E-20 2.1E-24 188.9 18.6 196 379-576 7-229 (233)
34 3tt9_A Plakophilin-2; cell adh 99.8 6.7E-20 2.3E-24 188.6 13.9 196 422-624 9-229 (233)
35 2f42_A STIP1 homology and U-bo 99.8 1.9E-20 6.6E-25 181.4 6.5 93 224-334 83-175 (179)
36 2kre_A Ubiquitin conjugation f 99.8 2.8E-20 9.6E-25 164.3 6.4 74 260-334 24-97 (100)
37 2kr4_A Ubiquitin conjugation f 99.8 2.8E-20 9.7E-25 159.6 5.7 73 260-333 9-81 (85)
38 1wgm_A Ubiquitin conjugation f 99.8 9E-20 3.1E-24 160.4 7.6 74 260-334 17-91 (98)
39 4db6_A Armadillo repeat protei 99.8 3.7E-18 1.3E-22 175.9 20.5 197 638-875 11-208 (210)
40 4db6_A Armadillo repeat protei 99.8 6.6E-18 2.3E-22 174.0 21.6 198 593-801 10-208 (210)
41 1b3u_A Protein (protein phosph 99.8 9.6E-17 3.3E-21 192.6 34.4 493 381-958 50-546 (588)
42 2c2l_A CHIP, carboxy terminus 99.8 1.1E-18 3.6E-23 188.9 12.4 75 260-334 203-277 (281)
43 1xqr_A HSPBP1 protein; armadil 99.8 2.4E-17 8.2E-22 177.4 21.8 227 653-922 54-289 (296)
44 1b3u_A Protein (protein phosph 99.7 5E-16 1.7E-20 186.3 30.1 495 381-959 88-586 (588)
45 1xqr_A HSPBP1 protein; armadil 99.7 5.7E-17 2E-21 174.4 18.6 225 697-962 54-289 (296)
46 1t1h_A Gspef-atpub14, armadill 99.7 9.7E-18 3.3E-22 142.4 6.6 74 261-334 4-77 (78)
47 2yu4_A E3 SUMO-protein ligase 99.7 7.9E-18 2.7E-22 147.6 4.4 72 262-333 4-84 (94)
48 4fdd_A Transportin-1; heat rep 99.7 3.6E-15 1.2E-19 187.1 28.5 521 380-958 174-782 (852)
49 3m62_A Ubiquitin conjugation f 99.7 3E-16 1E-20 185.9 16.3 72 261-333 887-959 (968)
50 2vgl_B AP-2 complex subunit be 99.7 1.2E-14 4.1E-19 173.9 28.4 434 380-918 13-455 (591)
51 4fdd_A Transportin-1; heat rep 99.7 1.1E-14 3.6E-19 182.9 29.1 519 379-960 127-699 (852)
52 2vgl_B AP-2 complex subunit be 99.6 3.5E-13 1.2E-17 161.2 32.7 504 342-960 20-532 (591)
53 3grl_A General vesicular trans 99.6 7.5E-12 2.6E-16 143.5 39.0 366 379-804 20-451 (651)
54 2bay_A PRE-mRNA splicing facto 99.6 4.2E-16 1.5E-20 123.3 1.2 56 264-320 2-58 (61)
55 2bpt_A Importin beta-1 subunit 99.5 3.5E-12 1.2E-16 160.2 33.4 519 379-960 133-711 (861)
56 3grl_A General vesicular trans 99.5 1.3E-11 4.3E-16 141.6 34.4 439 349-804 36-552 (651)
57 3ztg_A E3 ubiquitin-protein li 99.5 4.3E-14 1.5E-18 124.0 7.3 73 261-333 9-84 (92)
58 1qgr_A Protein (importin beta 99.5 6.4E-11 2.2E-15 149.0 39.3 277 379-669 127-438 (876)
59 2bpt_A Importin beta-1 subunit 99.4 9.3E-12 3.2E-16 156.3 28.2 511 382-960 226-811 (861)
60 1w63_A Adapter-related protein 99.4 8.5E-11 2.9E-15 140.9 32.7 475 382-960 72-577 (618)
61 3htk_C E3 SUMO-protein ligase 99.4 1.7E-13 5.8E-18 138.5 3.1 70 262-331 178-251 (267)
62 1oyz_A Hypothetical protein YI 99.4 8E-11 2.7E-15 126.7 24.3 259 458-799 19-279 (280)
63 1oyz_A Hypothetical protein YI 99.4 1.6E-10 5.4E-15 124.3 26.4 256 379-709 22-279 (280)
64 3fl2_A E3 ubiquitin-protein li 99.3 5.5E-13 1.9E-17 123.9 6.0 68 264-331 51-119 (124)
65 1z6u_A NP95-like ring finger p 99.3 1.2E-12 4E-17 125.2 5.9 68 263-330 76-144 (150)
66 1w63_A Adapter-related protein 99.3 3.8E-10 1.3E-14 135.3 29.0 447 382-926 109-583 (618)
67 1u6g_C TIP120 protein, CAND1; 99.3 1.1E-09 3.9E-14 142.7 33.1 474 380-920 48-598 (1230)
68 1ibr_B P95, importin beta-1 su 99.3 9.1E-11 3.1E-15 135.8 20.1 384 467-920 6-437 (462)
69 1u6g_C TIP120 protein, CAND1; 99.3 1.3E-10 4.3E-15 151.7 23.3 514 382-961 8-599 (1230)
70 1qgr_A Protein (importin beta 99.2 4.8E-10 1.7E-14 140.9 25.7 425 467-961 6-480 (876)
71 2y43_A E3 ubiquitin-protein li 99.2 5.7E-12 1.9E-16 111.9 4.7 68 264-332 21-89 (99)
72 1ibr_B P95, importin beta-1 su 99.2 6.5E-11 2.2E-15 137.0 13.9 386 385-802 7-437 (462)
73 3lrq_A E3 ubiquitin-protein li 99.2 1E-11 3.6E-16 110.2 4.0 68 264-331 21-89 (100)
74 2ckl_A Polycomb group ring fin 99.2 1.4E-11 4.8E-16 111.3 4.8 67 263-330 13-84 (108)
75 3ltm_A Alpha-REP4; protein eng 99.2 1.4E-09 4.9E-14 111.4 19.7 185 420-667 18-202 (211)
76 2egp_A Tripartite motif-contai 99.1 2.3E-12 7.9E-17 109.4 -1.4 63 262-324 9-77 (79)
77 3l11_A E3 ubiquitin-protein li 99.1 9.5E-12 3.2E-16 113.9 2.2 69 262-330 12-87 (115)
78 1jm7_B BARD1, BRCA1-associated 99.1 1.5E-11 5.1E-16 112.8 3.3 66 264-332 21-87 (117)
79 2vgl_A Adaptor protein complex 99.1 6.9E-08 2.4E-12 115.3 35.6 331 421-802 74-433 (621)
80 2yur_A Retinoblastoma-binding 99.1 4.3E-11 1.5E-15 99.7 5.5 58 261-318 11-71 (74)
81 3hct_A TNF receptor-associated 99.1 1.8E-11 6E-16 112.5 3.4 71 262-332 15-85 (118)
82 2ecw_A Tripartite motif-contai 99.1 1.7E-11 5.8E-16 105.7 2.8 64 262-325 16-84 (85)
83 3ltm_A Alpha-REP4; protein eng 99.1 3.7E-09 1.3E-13 108.3 20.6 187 460-712 17-203 (211)
84 3ltj_A Alpharep-4; protein eng 99.1 2.8E-09 9.5E-14 108.3 19.1 185 420-667 13-197 (201)
85 2ecy_A TNF receptor-associated 99.1 5.1E-11 1.7E-15 96.9 4.8 54 262-315 12-65 (66)
86 2ckl_B Ubiquitin ligase protei 99.1 2.8E-11 9.4E-16 118.6 3.7 71 262-332 51-123 (165)
87 4ayc_A E3 ubiquitin-protein li 99.1 2.8E-10 9.7E-15 107.5 9.7 63 264-329 52-114 (138)
88 2ecv_A Tripartite motif-contai 99.1 1.7E-11 5.6E-16 105.8 1.0 63 262-324 16-83 (85)
89 1jm7_A BRCA1, breast cancer ty 99.1 5.3E-11 1.8E-15 108.5 4.2 68 264-331 20-89 (112)
90 2csy_A Zinc finger protein 183 99.1 6.8E-11 2.3E-15 100.6 4.5 62 262-325 12-73 (81)
91 3ltj_A Alpharep-4; protein eng 99.1 5.4E-09 1.8E-13 106.2 19.6 185 462-712 14-198 (201)
92 2djb_A Polycomb group ring fin 99.0 2.9E-10 1E-14 94.2 6.5 57 262-319 12-69 (72)
93 2vgl_A Adaptor protein complex 99.0 1.1E-07 3.7E-12 113.6 30.0 471 381-960 75-589 (621)
94 2ysl_A Tripartite motif-contai 99.0 3.8E-10 1.3E-14 93.9 5.0 53 262-314 17-71 (73)
95 3knv_A TNF receptor-associated 99.0 9E-11 3.1E-15 110.7 0.9 67 262-328 28-103 (141)
96 3hcs_A TNF receptor-associated 99.0 2.1E-10 7.3E-15 112.9 3.4 68 262-329 15-82 (170)
97 1rmd_A RAG1; V(D)J recombinati 98.9 2.9E-10 9.8E-15 104.2 3.9 67 263-329 21-88 (116)
98 1g25_A CDK-activating kinase a 98.9 2.9E-10 9.9E-15 92.1 3.1 55 264-318 2-61 (65)
99 2ysj_A Tripartite motif-contai 98.9 5.4E-10 1.8E-14 89.9 4.4 45 262-306 17-63 (63)
100 3ng2_A RNF4, snurf, ring finge 98.9 6.8E-10 2.3E-14 91.8 2.6 57 262-319 7-70 (71)
101 2d8t_A Dactylidin, ring finger 98.8 2.4E-09 8.1E-14 88.3 4.5 50 262-312 12-61 (71)
102 2ecj_A Tripartite motif-contai 98.8 2.5E-09 8.5E-14 84.4 4.2 45 262-306 12-58 (58)
103 2ct2_A Tripartite motif protei 98.7 6.4E-09 2.2E-13 90.0 5.1 51 262-312 12-68 (88)
104 2xeu_A Ring finger protein 4; 98.7 2.4E-09 8.2E-14 86.4 1.1 54 264-318 2-62 (64)
105 2ea6_A Ring finger protein 4; 98.7 8.8E-09 3E-13 84.5 3.7 50 262-312 12-68 (69)
106 1e4u_A Transcriptional repress 98.7 1.1E-08 3.9E-13 85.1 4.4 53 263-315 9-65 (78)
107 4gmo_A Putative uncharacterize 98.6 5.4E-08 1.8E-12 117.8 10.0 220 503-758 34-257 (684)
108 2ect_A Ring finger protein 126 98.6 3.2E-08 1.1E-12 83.3 4.6 55 263-318 13-70 (78)
109 4gmo_A Putative uncharacterize 98.5 2E-07 6.9E-12 112.8 11.1 199 596-801 35-257 (684)
110 1bor_A Transcription factor PM 98.5 2.6E-08 8.8E-13 77.6 1.2 45 264-312 5-49 (56)
111 1chc_A Equine herpes virus-1 r 98.5 6.3E-08 2.1E-12 79.0 3.2 48 264-312 4-52 (68)
112 2ecn_A Ring finger protein 141 98.5 3.4E-08 1.2E-12 81.2 1.6 51 262-314 12-62 (70)
113 2ecm_A Ring finger and CHY zin 98.5 6.4E-08 2.2E-12 75.2 3.0 47 264-311 4-54 (55)
114 4ap4_A E3 ubiquitin ligase RNF 98.4 4.8E-08 1.6E-12 91.8 1.6 54 264-318 6-66 (133)
115 2ep4_A Ring finger protein 24; 98.4 2.7E-07 9.3E-12 76.6 5.7 51 262-313 12-65 (74)
116 2l0b_A E3 ubiquitin-protein li 98.4 1.6E-07 5.4E-12 81.4 3.5 48 264-312 39-89 (91)
117 2kiz_A E3 ubiquitin-protein li 98.3 4.4E-07 1.5E-11 74.2 5.3 49 263-312 12-63 (69)
118 1v87_A Deltex protein 2; ring- 98.3 2.7E-07 9.4E-12 83.9 4.5 49 264-312 24-94 (114)
119 4ady_A RPN2, 26S proteasome re 98.3 0.00019 6.6E-09 86.6 30.0 298 510-919 365-675 (963)
120 4ic3_A E3 ubiquitin-protein li 98.3 1.3E-07 4.3E-12 78.4 1.6 44 264-312 23-67 (74)
121 1iym_A EL5; ring-H2 finger, ub 98.3 2.2E-07 7.4E-12 72.1 2.9 46 264-310 4-53 (55)
122 1x4j_A Ring finger protein 38; 98.3 2.2E-07 7.6E-12 77.3 2.4 48 264-312 22-72 (75)
123 4ady_A RPN2, 26S proteasome re 98.3 0.00041 1.4E-08 83.8 30.9 312 421-802 392-719 (963)
124 2y1n_A E3 ubiquitin-protein li 98.3 3.5E-07 1.2E-11 99.2 3.9 49 265-313 332-380 (389)
125 2ecg_A Baculoviral IAP repeat- 98.2 7.2E-07 2.5E-11 74.1 2.7 44 264-312 24-68 (75)
126 1wim_A KIAA0161 protein; ring 98.1 4.8E-07 1.7E-11 78.9 0.6 66 264-330 4-83 (94)
127 3b2a_A TON_1937, putative unch 98.0 0.00026 9E-09 70.0 18.6 186 379-579 32-221 (265)
128 1wa5_C Importin alpha RE-expor 98.0 0.019 6.5E-07 72.3 40.6 389 420-875 34-524 (960)
129 3tjz_B Coatomer subunit gamma; 98.0 0.00011 3.8E-09 79.9 17.1 262 423-735 70-335 (355)
130 4ap4_A E3 ubiquitin ligase RNF 98.0 8.9E-07 3E-11 83.0 0.1 55 263-318 70-131 (133)
131 3b2a_A TON_1937, putative unch 98.0 0.00031 1.1E-08 69.5 17.7 182 462-667 33-217 (265)
132 1ho8_A Vacuolar ATP synthase s 98.0 0.0017 5.7E-08 72.3 25.8 356 544-920 77-476 (480)
133 1te4_A Conserved protein MTH18 97.9 1.6E-06 5.3E-11 81.1 1.0 118 725-917 13-130 (131)
134 2ecl_A Ring-box protein 2; RNF 97.9 5.4E-06 1.9E-10 69.8 3.9 48 264-312 14-76 (81)
135 2db0_A 253AA long hypothetical 97.9 0.00072 2.5E-08 63.9 18.2 222 679-966 29-252 (253)
136 2qk2_A LP04448P; mini spindles 97.9 6.1E-05 2.1E-09 78.4 12.3 181 466-667 19-204 (242)
137 2vje_A E3 ubiquitin-protein li 97.9 6.6E-06 2.2E-10 65.7 3.6 48 263-311 6-56 (64)
138 1te4_A Conserved protein MTH18 97.9 2.4E-06 8.1E-11 79.9 0.8 121 420-574 11-131 (131)
139 2vje_B MDM4 protein; proto-onc 97.9 7.7E-06 2.6E-10 65.1 3.4 48 264-312 6-56 (63)
140 3tjz_B Coatomer subunit gamma; 97.8 0.00026 8.8E-09 77.0 15.0 246 504-804 69-318 (355)
141 2db0_A 253AA long hypothetical 97.8 0.0017 5.8E-08 61.5 18.2 215 639-922 32-248 (253)
142 2yho_A E3 ubiquitin-protein li 97.8 5.4E-06 1.8E-10 69.3 1.4 44 264-312 17-61 (79)
143 3dpl_R Ring-box protein 1; ubi 97.7 1.9E-05 6.4E-10 69.9 4.1 47 264-311 36-100 (106)
144 3t6p_A Baculoviral IAP repeat- 97.7 5.7E-06 2E-10 89.5 0.6 44 264-312 294-338 (345)
145 2qk2_A LP04448P; mini spindles 97.6 0.0008 2.7E-08 69.8 15.0 184 425-624 19-205 (242)
146 2qk1_A Protein STU2; STU2P, XM 97.6 0.0005 1.7E-08 71.7 13.3 187 467-667 21-219 (249)
147 1ho8_A Vacuolar ATP synthase s 97.5 0.0069 2.3E-07 67.4 22.0 343 379-758 76-475 (480)
148 2ea5_A Cell growth regulator w 97.5 7.5E-05 2.6E-09 60.2 4.8 44 264-312 14-58 (68)
149 2iw3_A Elongation factor 3A; a 97.4 0.012 4E-07 72.3 24.3 297 467-801 19-323 (986)
150 2d8s_A Cellular modulator of i 97.4 0.0001 3.5E-09 61.4 3.9 50 263-312 13-70 (80)
151 2x1g_F Cadmus; transport prote 97.4 0.031 1.1E-06 70.5 28.8 490 391-958 19-613 (971)
152 1wa5_C Importin alpha RE-expor 97.4 0.0066 2.3E-07 76.5 22.2 394 502-961 34-526 (960)
153 2x19_B Importin-13; nuclear tr 97.3 0.22 7.6E-06 62.6 35.0 456 391-920 37-556 (963)
154 4a0k_B E3 ubiquitin-protein li 97.3 3.8E-05 1.3E-09 68.8 0.0 46 265-311 48-111 (117)
155 2iw3_A Elongation factor 3A; a 97.3 0.033 1.1E-06 68.3 25.4 289 564-920 31-324 (986)
156 2qk1_A Protein STU2; STU2P, XM 97.3 0.00032 1.1E-08 73.1 6.8 184 742-961 28-221 (249)
157 2x1g_F Cadmus; transport prote 97.2 0.17 5.9E-06 63.6 32.7 468 379-920 38-615 (971)
158 3dad_A FH1/FH2 domain-containi 97.2 0.0084 2.9E-07 63.4 16.5 150 509-667 124-285 (339)
159 3m1i_C Exportin-1; heat repeat 97.1 0.089 3E-06 66.8 29.1 208 390-624 27-263 (1049)
160 2x19_B Importin-13; nuclear tr 97.1 1.1 3.6E-05 56.3 39.0 462 379-920 56-599 (963)
161 3dad_A FH1/FH2 domain-containi 97.1 0.013 4.6E-07 61.8 16.8 147 429-575 126-285 (339)
162 4hat_C Exportin-1; heat repeat 96.8 1.4 4.7E-05 55.2 34.4 217 382-624 18-263 (1023)
163 2fv2_A RCD1 required for cell 96.7 0.055 1.9E-06 54.6 17.1 104 698-802 71-174 (268)
164 2kr4_A Ubiquitin conjugation f 96.5 0.00088 3E-08 56.6 2.1 66 299-367 13-81 (85)
165 3ibv_A Exportin-T; karyopherin 96.5 0.33 1.1E-05 60.6 26.2 210 392-629 21-265 (980)
166 2kre_A Ubiquitin conjugation f 96.3 0.0011 3.8E-08 57.9 1.3 66 299-367 28-96 (100)
167 2bay_A PRE-mRNA splicing facto 96.2 0.00071 2.4E-08 53.0 -0.2 50 300-351 3-55 (61)
168 3m1i_C Exportin-1; heat repeat 96.1 0.69 2.3E-05 58.6 26.6 214 432-669 27-264 (1049)
169 2f42_A STIP1 homology and U-bo 96.1 0.0017 5.9E-08 62.7 1.8 66 299-366 105-173 (179)
170 2ct0_A Non-SMC element 1 homol 96.0 0.0067 2.3E-07 49.2 4.5 46 266-311 16-63 (74)
171 1wgm_A Ubiquitin conjugation f 96.0 0.0024 8.3E-08 55.5 2.0 66 299-367 21-90 (98)
172 2fv2_A RCD1 required for cell 96.0 0.26 9E-06 49.7 16.8 226 393-666 15-266 (268)
173 3ibv_A Exportin-T; karyopherin 95.5 3.7 0.00013 51.1 29.0 434 380-875 40-565 (980)
174 4hat_C Exportin-1; heat repeat 95.4 5.4 0.00019 49.8 29.7 219 425-668 20-263 (1023)
175 4ffb_C Protein STU2; tubulin f 95.3 0.29 9.9E-06 51.4 15.5 184 467-667 14-211 (278)
176 3m62_A Ubiquitin conjugation f 95.2 0.004 1.4E-07 74.7 0.9 66 300-368 891-960 (968)
177 1vyx_A ORF K3, K3RING; zinc-bi 95.1 0.014 4.7E-07 45.4 3.3 47 265-311 6-58 (60)
178 2yu4_A E3 SUMO-protein ligase 94.9 0.0075 2.6E-07 52.0 1.5 67 299-366 6-83 (94)
179 3oc3_A Helicase MOT1, MOT1; re 94.7 1 3.5E-05 50.5 17.6 133 386-531 181-327 (800)
180 3vk6_A E3 ubiquitin-protein li 94.5 0.012 4E-07 49.8 1.5 51 267-317 3-54 (101)
181 1lrv_A LRV, leucine-rich repea 94.1 0.052 1.8E-06 55.7 5.7 45 894-955 197-241 (244)
182 1lrv_A LRV, leucine-rich repea 93.8 0.14 4.8E-06 52.4 8.4 33 629-661 64-96 (244)
183 3k1l_B Fancl; UBC, ring, RWD, 93.1 0.013 4.4E-07 61.5 -0.9 47 265-311 308-372 (381)
184 1upk_A MO25 protein; transfera 92.7 3.3 0.00011 43.6 16.7 195 379-578 77-285 (341)
185 2c2l_A CHIP, carboxy terminus 92.7 0.033 1.1E-06 58.9 1.6 66 299-366 207-275 (281)
186 1upk_A MO25 protein; transfera 92.5 4.7 0.00016 42.6 17.3 215 638-890 77-298 (341)
187 4ffb_C Protein STU2; tubulin f 92.4 1.1 3.8E-05 46.8 13.2 150 726-921 57-213 (278)
188 2jun_A Midline-1; B-BOX, TRIM, 92.3 0.052 1.8E-06 47.3 2.0 32 264-295 2-36 (101)
189 2of3_A ZYG-9; multifunctional 91.8 1.9 6.4E-05 44.5 13.4 173 466-667 50-235 (266)
190 3u0r_A Apoptosis inhibitor 5; 91.6 18 0.00063 40.0 21.4 130 381-529 30-160 (507)
191 3gjx_A Exportin-1; transport, 90.9 40 0.0014 42.1 33.5 172 392-577 74-276 (1073)
192 3i2d_A E3 SUMO-protein ligase 90.2 0.15 5.2E-06 54.5 3.4 64 264-327 248-315 (371)
193 2of3_A ZYG-9; multifunctional 89.8 2.9 0.0001 43.0 12.6 175 385-575 52-235 (266)
194 1t1h_A Gspef-atpub14, armadill 89.7 0.11 3.8E-06 42.7 1.5 65 299-365 7-74 (78)
195 3ebb_A Phospholipase A2-activa 88.3 6 0.00021 41.7 14.1 175 381-555 104-286 (304)
196 3u0r_A Apoptosis inhibitor 5; 87.6 15 0.00052 40.6 16.8 122 472-621 38-160 (507)
197 3ebb_A Phospholipase A2-activa 87.6 16 0.00055 38.4 16.9 59 474-532 160-220 (304)
198 4fo9_A E3 SUMO-protein ligase 86.7 0.43 1.5E-05 50.9 4.0 64 264-327 214-281 (360)
199 3oc3_A Helicase MOT1, MOT1; re 84.9 2.5 8.7E-05 47.5 9.0 187 697-956 242-432 (800)
200 3gjx_A Exportin-1; transport, 84.1 94 0.0032 38.8 33.0 138 381-532 29-178 (1073)
201 3htk_C E3 SUMO-protein ligase 83.3 0.26 9E-06 50.0 0.4 59 299-358 180-243 (267)
202 3c2g_A SYS-1 protein; beta-cat 82.2 15 0.00051 38.5 12.8 120 634-756 279-400 (619)
203 3nw0_A Non-structural maintena 80.8 1.1 3.8E-05 45.4 4.0 47 266-312 181-229 (238)
204 1lsh_A Lipovitellin (LV-1N, LV 79.5 31 0.0011 43.2 17.4 136 594-758 390-542 (1056)
205 2f31_A Diaphanous protein homo 74.4 56 0.0019 32.6 14.7 111 379-489 42-178 (233)
206 1weo_A Cellulose synthase, cat 72.6 9.9 0.00034 31.2 6.5 49 264-312 15-70 (93)
207 1lsh_A Lipovitellin (LV-1N, LV 72.3 47 0.0016 41.6 16.3 168 465-672 394-580 (1056)
208 3c2g_A SYS-1 protein; beta-cat 71.9 18 0.00061 38.0 9.9 180 659-859 263-450 (619)
209 3ztg_A E3 ubiquitin-protein li 71.8 1.2 4.3E-05 37.5 1.3 46 299-344 12-60 (92)
210 2f31_A Diaphanous protein homo 71.3 34 0.0012 34.2 12.2 102 609-712 68-180 (233)
211 3eg5_B Protein diaphanous homo 70.1 47 0.0016 36.1 13.7 75 461-535 108-194 (383)
212 3l9t_A Putative uncharacterize 69.7 48 0.0016 33.1 12.3 132 686-875 74-206 (240)
213 3mjh_B Early endosome antigen 67.6 1 3.4E-05 30.0 -0.2 18 264-281 4-21 (34)
214 3eg5_B Protein diaphanous homo 66.6 1.1E+02 0.0039 33.0 15.9 120 394-514 135-275 (383)
215 2bnx_A Diaphanous protein homo 63.8 50 0.0017 35.9 12.4 124 609-735 72-213 (386)
216 3l9t_A Putative uncharacterize 62.2 72 0.0024 31.8 11.8 132 561-722 85-218 (240)
217 2bnx_A Diaphanous protein homo 59.8 1.6E+02 0.0054 31.9 15.5 140 379-519 46-219 (386)
218 3qml_C Protein SLS1, nucleotid 56.5 86 0.0029 32.5 11.6 152 726-920 24-189 (315)
219 3a6p_A Exportin-5; exportin-5, 56.2 4E+02 0.014 33.7 22.5 300 546-922 13-382 (1204)
220 2kkx_A Uncharacterized protein 55.3 8.5 0.00029 32.3 3.2 53 261-314 23-81 (102)
221 1x5b_A Signal transducing adap 54.6 24 0.00081 33.2 6.7 70 640-709 53-122 (163)
222 2jvx_A NF-kappa-B essential mo 49.9 4.2 0.00014 25.8 0.4 16 264-279 2-17 (28)
223 4abx_A DNA repair protein RECN 48.1 1.8E+02 0.0062 27.3 14.5 78 44-126 8-87 (175)
224 3lay_A Zinc resistance-associa 46.0 73 0.0025 30.2 8.5 50 130-179 66-115 (175)
225 1x5b_A Signal transducing adap 45.7 31 0.001 32.5 5.9 69 848-918 53-123 (163)
226 3ldz_A STAM-1, signal transduc 44.9 25 0.00084 32.2 5.0 70 847-918 42-112 (140)
227 3fl2_A E3 ubiquitin-protein li 42.9 9.4 0.00032 34.1 1.8 46 300-346 52-99 (124)
228 1mhq_A ADP-ribosylation factor 42.3 40 0.0014 31.1 6.0 69 848-918 39-114 (148)
229 2yur_A Retinoblastoma-binding 41.9 12 0.00041 29.8 2.1 45 300-344 15-62 (74)
230 3g2s_A C-terminal fragment of 41.9 53 0.0018 30.3 6.8 71 640-710 49-124 (149)
231 1mhq_A ADP-ribosylation factor 41.2 49 0.0017 30.5 6.5 71 640-710 39-114 (148)
232 1juq_A ADP-ribosylation factor 40.1 46 0.0016 31.5 6.3 70 640-709 51-125 (171)
233 1juq_A ADP-ribosylation factor 39.9 43 0.0015 31.7 6.0 69 848-918 51-126 (171)
234 3zyq_A Hepatocyte growth facto 39.7 35 0.0012 34.1 5.6 70 640-709 46-115 (226)
235 3g2s_A C-terminal fragment of 39.1 52 0.0018 30.3 6.3 69 848-918 49-124 (149)
236 2k5c_A Uncharacterized protein 39.0 8 0.00027 30.8 0.6 53 266-318 9-69 (95)
237 3ldz_A STAM-1, signal transduc 38.4 1.1E+02 0.0038 27.7 8.4 70 640-710 43-112 (140)
238 1z6u_A NP95-like ring finger p 37.8 12 0.00042 34.7 1.7 47 300-347 78-126 (150)
239 1dvp_A HRS, hepatocyte growth 36.3 44 0.0015 33.1 5.7 68 640-707 43-110 (220)
240 2cs3_A Protein C14ORF4, MY039 35.4 24 0.00081 28.2 2.7 34 263-296 13-50 (93)
241 3gs3_A Symplekin, LD45768P; he 34.2 3.8E+02 0.013 27.0 13.5 65 774-875 54-118 (257)
242 2kw6_A Cyclin-dependent kinase 32.9 18 0.00063 27.5 1.6 42 52-93 15-56 (65)
243 3zyq_A Hepatocyte growth facto 32.7 51 0.0017 32.8 5.5 69 848-918 46-116 (226)
244 3o2t_A Symplekin; heat repeat, 32.7 1.4E+02 0.0046 32.3 9.2 67 772-875 62-128 (386)
245 2ecy_A TNF receptor-associated 31.5 32 0.0011 26.4 3.0 45 300-345 15-61 (66)
246 3gae_A Protein DOA1; UFD3, CDC 31.1 63 0.0021 32.8 5.9 127 396-532 71-217 (253)
247 3s4w_B Protein FACD2, fanconi 30.1 9.5E+02 0.032 30.4 17.8 56 742-802 412-467 (1323)
248 6rxn_A Rubredoxin; electron tr 30.0 16 0.00053 26.3 0.8 12 262-273 27-38 (46)
249 1rmd_A RAG1; V(D)J recombinati 29.6 16 0.00056 31.9 1.1 48 300-348 23-72 (116)
250 3qfl_A MLA10; coiled-coil, (CC 28.9 2.3E+02 0.008 24.4 8.6 74 17-93 5-79 (115)
251 2ecw_A Tripartite motif-contai 28.0 25 0.00085 28.4 1.9 48 299-346 18-71 (85)
252 3qml_C Protein SLS1, nucleotid 27.0 5.4E+02 0.019 26.6 14.3 133 394-531 43-188 (315)
253 2ecv_A Tripartite motif-contai 26.5 31 0.0011 27.8 2.3 49 299-347 18-72 (85)
254 3hct_A TNF receptor-associated 26.5 16 0.00054 32.2 0.4 47 300-347 18-66 (118)
255 2xqn_T Testin, TESS; metal-bin 26.4 38 0.0013 30.0 3.0 47 263-312 28-75 (126)
256 1dvp_A HRS, hepatocyte growth 25.9 77 0.0026 31.3 5.4 69 848-918 43-113 (220)
257 1elk_A Target of MYB1; superhe 24.9 1.2E+02 0.0042 28.0 6.3 70 640-709 54-127 (157)
258 2ysj_A Tripartite motif-contai 24.3 41 0.0014 25.4 2.4 40 299-338 19-61 (63)
259 2y43_A E3 ubiquitin-protein li 23.8 31 0.001 29.1 1.7 47 300-348 22-71 (99)
260 2csy_A Zinc finger protein 183 22.6 25 0.00086 28.3 0.9 44 300-345 15-60 (81)
261 1m3v_A FLIN4, fusion of the LI 22.6 46 0.0016 29.4 2.7 49 264-313 31-82 (122)
262 4rxn_A Rubredoxin; electron tr 22.6 25 0.00087 26.1 0.8 14 261-274 32-45 (54)
263 1e8j_A Rubredoxin; iron-sulfur 22.2 28 0.00097 25.6 1.0 14 261-274 32-45 (52)
264 2m1l_A Cyclin-dependent kinase 21.9 49 0.0017 25.5 2.2 42 52-93 19-60 (69)
265 2ysl_A Tripartite motif-contai 21.6 40 0.0014 26.3 1.9 47 299-345 19-68 (73)
266 3vhs_A ATPase wrnip1; zinc fin 21.5 20 0.0007 21.6 0.1 13 265-277 6-18 (29)
267 2egp_A Tripartite motif-contai 21.3 16 0.00056 29.2 -0.5 50 299-348 11-67 (79)
268 2ckl_B Ubiquitin ligase protei 21.3 28 0.00096 32.7 1.1 46 300-346 54-102 (165)
269 4ayc_A E3 ubiquitin-protein li 20.6 30 0.001 31.4 1.1 45 300-346 53-99 (138)
270 3o2t_A Symplekin; heat repeat, 20.6 7.6E+02 0.026 26.4 12.3 66 461-530 62-127 (386)
271 2ecj_A Tripartite motif-contai 20.3 71 0.0024 23.3 3.0 40 299-338 14-56 (58)
272 2kn9_A Rubredoxin; metalloprot 20.1 33 0.0011 27.9 1.0 17 261-277 56-72 (81)
No 1
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.4e-39 Score=387.10 Aligned_cols=503 Identities=18% Similarity=0.185 Sum_probs=413.5
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcC-CCHHHHHHHHHHHHhccCCchhHH
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS-DDNQASRDAQELLENLSFSDDNVV 456 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~~~~~~~~a~~~L~~Ls~~~~n~~ 456 (968)
.|+++.+++.|.+ ++..+..|+..|..++.++.++..+....|+++.|+.+|.+ +++.++..|+.+|.+++.+++++.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 7889999999964 56789999999999999888887777646999999999964 589999999999999999888999
Q ss_pred HHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CC
Q 002091 457 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VP 534 (968)
Q Consensus 457 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~ 534 (968)
.+.+.|+++.|+++|+++++.++..|+++|.+++.+ +..+..+.+.|+++.|+++|++++++++..++.+|.+++. ++
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999765 5667778889999999999999999999999999999996 57
Q ss_pred ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHH
Q 002091 535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQR 614 (968)
Q Consensus 535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~ 614 (968)
+++..+.+.|+++.|+++|.+++ ....+..+..+|.+|+.++..+. .+...|+++.++.++.+.++.++..
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~-------~~~~~g~~~~L~~ll~~~~~~~~~~ 246 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKP-------AIVEAGGMQALGLHLTDPSQRLVQN 246 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHH-------HHHHTTHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC--hHHHHHHHHHHHHHHhcCcccHH-------HHHHCCCHHHHHHHHhCCChHHHHH
Confidence 88999999999999999998764 25677788999999998765544 3556789999999999999999999
Q ss_pred HHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC
Q 002091 615 ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS 694 (968)
Q Consensus 615 al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 694 (968)
++++|.+++....... ...++++.|+.++.++++.++..|+++|.+|+ .++++.+..+.+.|+++.|+.+|.+.
T Consensus 247 a~~~L~~l~~~~~~~~-----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~L~~ll~~~ 320 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRA 320 (529)
T ss_dssp HHHHHHHHHTTCTTCS-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhH-----HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHHHHcc
Confidence 9999999997643322 12368999999999999999999999999998 66667788888999999999999874
Q ss_pred -CCHHHHHHHHHHHhcCCC-CHH---hHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091 695 -HNEEEIASAMGILSKLPE-VPQ---FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 769 (968)
Q Consensus 695 -~~~~~~~~Al~~L~nL~~-~~~---~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~ 769 (968)
.+.+++..|+++|+||+. +++ .+..+.+.|+++.|+.+|.++ .+..+++.++++|+|++.+ +..+..+
T Consensus 321 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-----~~~~v~~~a~~~l~nl~~~--~~~~~~~ 393 (529)
T 1jdh_A 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-----SHWPLIKATVGLIRNLALC--PANHAPL 393 (529)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-----CCHHHHHHHHHHHHHHTTS--GGGHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccc-----cchHHHHHHHHHHHHHhcC--hhhhHHH
Confidence 347899999999999988 433 567889999999999999983 2358999999999999984 5566889
Q ss_pred HHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCccc-ccCCCccCcccchHHhhcCC
Q 002091 770 AEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGC-QVHGGLCGIESSFCLLEANA 848 (968)
Q Consensus 770 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c-~~h~~~c~~~~~~~l~~~g~ 848 (968)
.+.|++|.|+.++.++++.+|..|+|++.|.....+. .+ ..+ ....+ .++....++++...+.+.|+
T Consensus 394 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~--~~----~~i------~~~~~~al~~L~~~~~~~~~l~~~~~ 461 (529)
T 1jdh_A 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--RM----EEI------VEGCTGALHILARDVHNRIVIRGLNT 461 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CBTTB--CH----HHH------HHHHHHHHHHHTTSHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc--cH----HHH------HHHHHHHHHHHhcCchHHHHHhccCC
Confidence 9999999999999998999999999999983211100 00 000 00000 01111123455677899999
Q ss_pred hHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002091 849 VRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI 918 (968)
Q Consensus 849 i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 918 (968)
+++|+.++.+++++++..++++|.++... .+++..+.+.|+++.|.+++.++++.+++.|.++|.+|
T Consensus 462 v~~l~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 462 IPLFVQLLYSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHcCCchHHHHHHHHHHHHHhcC---HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999821 36788999999999999999999999999999999886
No 2
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=383.67 Aligned_cols=531 Identities=17% Similarity=0.180 Sum_probs=426.4
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcC-CCHHHHHHHHHHHHhccCCchhHH
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS-DDNQASRDAQELLENLSFSDDNVV 456 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~~~~~~~~a~~~L~~Ls~~~~n~~ 456 (968)
.|+++.+++.|.. ++..+..|+..|..++....++..+....|+++.|+.+|.+ ++..++..|+.+|.+++.+++++.
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 7889999999964 56789999999999999777887777646899999999975 489999999999999999888999
Q ss_pred HHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CC
Q 002091 457 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VP 534 (968)
Q Consensus 457 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~ 534 (968)
.+.+.|+++.|+.+|+++++.++..|+++|.+++.. +..+..+.+.|+++.|+++|+++++.++..++.+|.+|+. ++
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999765 4667778889999999999999999999999999999996 78
Q ss_pred ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHH
Q 002091 535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQR 614 (968)
Q Consensus 535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~ 614 (968)
+++..+++.|+++.|+++|.+.+ ...++..++.+|.+|+.++..+. .+...|+++.++.++...++.++..
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~~~a~~~L~nLs~~~~~~~-------~l~~~g~l~~L~~ll~~~~~~~~~~ 243 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKP-------AIVEAGGMQALGLHLTDPSQRLVQN 243 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCTTHHH-------HHHHTTHHHHHHTTTTCSCHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCcccHH-------HHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 89999999999999999998764 35678899999999998766554 3556789999999999999999999
Q ss_pred HHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC
Q 002091 615 ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS 694 (968)
Q Consensus 615 al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 694 (968)
++++|.+|+....... ...++++.|+.++.++++.++..|+++|.+|+ .++++.+..+.+.|+++.|+.+|.+.
T Consensus 244 a~~~L~nL~~~~~~~~-----~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~-~~~~~~~~~v~~~g~v~~Lv~lL~~~ 317 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRA 317 (644)
T ss_dssp HHHHHHHHGGGCTTCC-----SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhh-----hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHHHcc
Confidence 9999999997543221 12368999999999999999999999999998 66667788888899999999999875
Q ss_pred C-CHHHHHHHHHHHhcCCC-CH---HhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091 695 H-NEEEIASAMGILSKLPE-VP---QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 769 (968)
Q Consensus 695 ~-~~~~~~~Al~~L~nL~~-~~---~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~ 769 (968)
+ ..+++..|+++|+||+. ++ ..+..+.+.|+++.|+.+|.++ .+..+++.++++|+|++.+ +..++.+
T Consensus 318 ~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nLa~~--~~~~~~i 390 (644)
T 2z6h_A 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-----SHWPLIKATVGLIRNLALC--PANHAPL 390 (644)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT-----CCHHHHHHHHHHHHHHTTS--GGGHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc-----CchHHHHHHHHHHHHHccC--HHHHHHH
Confidence 4 37899999999999987 33 3445588999999999999983 2358999999999999984 5566889
Q ss_pred HHcCChHHHHHHhhcCChHHHHHHHHHHhh--hcccCCCCCCCCCCCCcccccCCCCCccc-ccCCCccCcccchHHhhc
Q 002091 770 AEAGVIPKLVQLLEYGTTLTKEHAATSLAR--FSKNSLGLSRPIPKRKGFWCFSPPPEIGC-QVHGGLCGIESSFCLLEA 846 (968)
Q Consensus 770 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~n--l~~~s~~l~~~~~~~~~~~~~~~~~~~~c-~~h~~~c~~~~~~~l~~~ 846 (968)
.+.|++|.|+.+|.++++.+|+.|+|++.| +..... + .. .....| .++....+.++...+.+.
T Consensus 391 ~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~----~----~~------v~~~a~~aL~~La~~~~~~~~l~~~ 456 (644)
T 2z6h_A 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR----M----EE------IVEGCTGALHILARDVHNRIVIRGL 456 (644)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTC----------CCSSC----H----HH------HHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc----H----HH------HHHHHHHHHHHHhcCHHHHHHHHhC
Confidence 999999999999998777777777776665 221000 0 00 000000 001111133455678899
Q ss_pred CChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh--h
Q 002091 847 NAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE--F 924 (968)
Q Consensus 847 g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~ 924 (968)
|++++|+.+|.+.++.++..++.+|.+++.. .+.+..+.+.|+++.|.+++.++++.+++.|.++|.++..+.. +
T Consensus 457 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 457 NTIPLFVQLLYSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 9999999999999999999999999999821 2678899999999999999999999999999999999987653 2
Q ss_pred HHHhcccCCchhhhhcccCCchhhHHH
Q 002091 925 KQKYGKSAQMPLVDLTQRGNSSMKSLS 951 (968)
Q Consensus 925 ~~~~~~~~~~~Lv~ll~~~~~~~~~~A 951 (968)
.+.. +...+..++.+.+....+.+
T Consensus 534 ~~~~---~~~il~~~~~~~~~~w~~~~ 557 (644)
T 2z6h_A 534 KKRL---SVELTSSLFRTEPMAWNETA 557 (644)
T ss_dssp HHHH---HHHHHHHHSCCSCGGGC---
T ss_pred hccc---chHHHHHHHhCCCccccccc
Confidence 2211 23445556666555555433
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8.5e-39 Score=383.43 Aligned_cols=485 Identities=15% Similarity=0.173 Sum_probs=403.2
Q ss_pred cChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHH
Q 002091 391 RRIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQ 469 (968)
Q Consensus 391 ~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~ 469 (968)
.+.+....|+..+..+.. .++....+....|+++.|+.++++++..+++.|+.++.+++.++.+|..+.+.|+ +.|+.
T Consensus 259 ~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~ 337 (810)
T 3now_A 259 PDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKR 337 (810)
T ss_dssp CCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHH
T ss_pred CChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHH
Confidence 455667777888887766 5566555553379999999999999999999999999999998899999999875 99999
Q ss_pred HHhcCCHHHHHHHHHHHHHhccCc--hhhHHHhhcCc----hHHHHHhhhcC--CHHHHHHHHHHHHHhcCCCccHHHHH
Q 002091 470 RLSAGPESVKMRMATTLAEMELTD--HHKASLLEGNV----LGPLLHLVSRG--DIQMKKVAVKALRNLSSVPQNGLQMI 541 (968)
Q Consensus 470 ~L~~~~~~~~~~aa~~L~~L~~~~--~~~~~i~~~g~----i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~ 541 (968)
+++++++.+|..|+.+|.+++... +.+..+.+.|. ++.|+++|.++ ++++++.|+++|.+|+..++.|..++
T Consensus 338 Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv 417 (810)
T 3now_A 338 LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI 417 (810)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 999999999999999999996432 33333444444 56678888887 89999999999999999999999888
Q ss_pred H-cCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCC----------CC----------------ccccccch
Q 002091 542 K-EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESS----------QT----------------PVTLLESD 594 (968)
Q Consensus 542 ~-~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~----------~~----------------~~~il~~~ 594 (968)
. .|++|.|+++|.+.+ ..++..|+++|.||+.+.+.+... .. ....+...
T Consensus 418 ~d~g~Ip~LV~LL~s~d---~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea 494 (810)
T 3now_A 418 EDKASIHALMDLARGGN---QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE 494 (810)
T ss_dssp HCHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHhCCCC---hHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence 5 699999999998754 789999999999999854322100 00 01344566
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhH
Q 002091 595 KEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI 674 (968)
Q Consensus 595 ~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~ 674 (968)
|+++.|+.+++++++.+++.++|+|.|++.. .+.+..+.+.|+++.|+.++.++++..++.|+++|.+|+...+++.
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 8999999999999999999999999999853 4578889999999999999999999999999999999985544432
Q ss_pred HHHh-hccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHH
Q 002091 675 IREH-VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVG 752 (968)
Q Consensus 675 ~~~~-~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~ 752 (968)
.... ...++++.|+.+|.+..+...+..|+++|.||+. +++.++.+++.|+++.|+.+|.+ .+..+++.|++
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s------~~~~Vq~~A~~ 645 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME------DHLYLTRAAAQ 645 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS------CCTTHHHHHHH
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHH
Confidence 2110 1136899999999875565566789999999999 78999999999999999999998 56789999999
Q ss_pred HHhhccCCCCHHHHHHHHH-cCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccC
Q 002091 753 ALRRFTAPTNLEWQKRAAE-AGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVH 831 (968)
Q Consensus 753 aL~~L~~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h 831 (968)
+|+|++. +++.+..+.+ .|.++.|+.++.+++..+|..|+|+|+|++..
T Consensus 646 ~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~---------------------------- 695 (810)
T 3now_A 646 CLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV---------------------------- 695 (810)
T ss_dssp HHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC----------------------------
Confidence 9999999 5677777775 78999999999999999999999999999831
Q ss_pred CCccCcccchHHhh-cCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCC---ChHH
Q 002091 832 GGLCGIESSFCLLE-ANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSP---SPKL 907 (968)
Q Consensus 832 ~~~c~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~---~~~v 907 (968)
+..+...+++ .|++++|+.+|.+++.++++.|+++|.|++.+. .+....+.+.|++++|.+++... ++++
T Consensus 696 ----s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i 769 (810)
T 3now_A 696 ----SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKA 769 (810)
T ss_dssp ----CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred ----CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence 2345677888 899999999999999999999999999998221 25688999999999999999544 7899
Q ss_pred HHHHHHHHHHHhcChhh
Q 002091 908 QEKALDSVERIFRLPEF 924 (968)
Q Consensus 908 ~~~a~~~L~~l~~~~~~ 924 (968)
.+.|..+|.++...+.+
T Consensus 770 ~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 770 REVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 99999999999866543
No 4
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=4.2e-38 Score=388.35 Aligned_cols=527 Identities=17% Similarity=0.186 Sum_probs=422.6
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcC-CCHHHHHHHHHHHHhccCCchhHH
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS-DDNQASRDAQELLENLSFSDDNVV 456 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~~~~~~~~a~~~L~~Ls~~~~n~~ 456 (968)
.|+++.+++.|.. +...++.|+..|..++.+...+..+....|+++.|+.+|.+ ++..++..|+.+|.+++.+++|+.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~ 228 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL 228 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 7899999999965 56789999999999999877888887646899999999974 489999999999999999999999
Q ss_pred HHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CC
Q 002091 457 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VP 534 (968)
Q Consensus 457 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~ 534 (968)
.+.+.|+++.|+.+|+++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+++|++++..++..++.+|.+|+. ++
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 999999999999999999999999999999999765 5667777789999999999999999999999999999995 67
Q ss_pred ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHH
Q 002091 535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQR 614 (968)
Q Consensus 535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~ 614 (968)
+++..+++.|+++.|+.+|.+.+ ....+..++.+|.+|+.+...+. .+...|+++.|+.++...++.++..
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~~~--~~~~~~~a~~aL~~Ls~~~~~~~-------~i~~~g~l~~Ll~lL~~~~~~~~~~ 379 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKP-------AIVEAGGMQALGLHLTDPSQRLVQN 379 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSTTHHH-------HHHHTTHHHHHGGGTTCSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHhhcChHHHH-------HHHHhchHHHHHHHHcCCchHHHHH
Confidence 88999999999999999998764 25567789999999998665544 3556789999999999999999999
Q ss_pred HHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC
Q 002091 615 ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS 694 (968)
Q Consensus 615 al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 694 (968)
++++|.+|+....... ...++++.|+.++.+.+..++..|+++|.+|+ .+.++.+..+.+.|+++.|+.+|...
T Consensus 380 a~~~L~~L~~~~~~~~-----~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~ 453 (780)
T 2z6g_A 380 CLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRA 453 (780)
T ss_dssp HHHHHHHHHTTCTTCS-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-SSCHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhh-----hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hCCHHHHHHHHHCCCHHHHHHHHHcc
Confidence 9999999997543211 12357999999999999999999999999998 66677788888999999999999874
Q ss_pred C-CHHHHHHHHHHHhcCCC-CHH---hHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091 695 H-NEEEIASAMGILSKLPE-VPQ---FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 769 (968)
Q Consensus 695 ~-~~~~~~~Al~~L~nL~~-~~~---~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~ 769 (968)
+ ..+++..|+++|+||+. +.+ .+..+...|+++.|+.+|.++ ....+++.++++|+|++. ++..+..+
T Consensus 454 ~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-----~~~~v~~~A~~aL~nLa~--~~~~~~~i 526 (780)
T 2z6g_A 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP-----SHWPLIKATVGLIRNLAL--CPANHAPL 526 (780)
T ss_dssp TTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-----CCHHHHHHHHHHHHHHHS--SHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC-----ChHHHHHHHHHHHHHHhc--CHHHHHHH
Confidence 3 45899999999999987 433 356788999999999999983 234899999999999998 56777889
Q ss_pred HHcCChHHHHHHhhcCChHHHHHHHHHHhh--hcccCCCCCCCCCCCCcccccCCCCCcccc-cCCCccCcccchHHhhc
Q 002091 770 AEAGVIPKLVQLLEYGTTLTKEHAATSLAR--FSKNSLGLSRPIPKRKGFWCFSPPPEIGCQ-VHGGLCGIESSFCLLEA 846 (968)
Q Consensus 770 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~n--l~~~s~~l~~~~~~~~~~~~~~~~~~~~c~-~h~~~c~~~~~~~l~~~ 846 (968)
.+.|++|.|+.+|.++++.+++.|+|++.| +..... ... .....|. ++....++++...+++.
T Consensus 527 ~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~--------~~~------v~~~a~~aL~~La~~~~~~~~l~~~ 592 (780)
T 2z6g_A 527 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR--------MEE------IVEACTGALHILARDIHNRIVIRGL 592 (780)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCC--------HHH------HHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccC--------hHH------HHHHHHHHHHHHhcChhhHHHHHHC
Confidence 999999999999998777777766666655 210000 000 0000000 00000134556678899
Q ss_pred CChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh--
Q 002091 847 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE-- 923 (968)
Q Consensus 847 g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-- 923 (968)
|++++|+.+|.+.++.++..++.+|.+++ +. +.+..+.+.|+++.|.+++.++++.+++.|.++|.++..+..
T Consensus 593 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~----~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDK----EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH----HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTT
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHh
Confidence 99999999999999999999999999998 43 678899999999999999999999999999999999987654
Q ss_pred hHHHhcccCCchhhhhcccCCchhh
Q 002091 924 FKQKYGKSAQMPLVDLTQRGNSSMK 948 (968)
Q Consensus 924 ~~~~~~~~~~~~Lv~ll~~~~~~~~ 948 (968)
++... +...+..++.+.+....
T Consensus 669 ~~~~l---~~~ll~~l~~~~~~~w~ 690 (780)
T 2z6g_A 669 YKKRL---SVELTSSLFRTEPMTWN 690 (780)
T ss_dssp HHHHH---HHHHHHHC---------
T ss_pred hhccc---cHHHHHHHHhCCCcccc
Confidence 33222 33345566666555554
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.9e-38 Score=371.18 Aligned_cols=413 Identities=19% Similarity=0.284 Sum_probs=352.5
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCC--chhHHHHHhCCchHHHHHHHhcC-CHHHHHHHHHHHHHhcc-Cchhh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFS--DDNVVQMAKANYFKHLLQRLSAG-PESVKMRMATTLAEMEL-TDHHK 496 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~--~~n~~~i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~-~~~~~ 496 (968)
..|+.+|..+.|+|...+..|+..++.+... ++....+++.|++|+|+++|+.. ++.+|..|+++|.+++. +++++
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4589999999999999999999999987533 34478899999999999999755 68999999999999954 66788
Q ss_pred HHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCC--CcchHHHHHHHHHH
Q 002091 497 ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSS--SSSLREETATAIMH 573 (968)
Q Consensus 497 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~--~~~~~~~a~~~L~~ 573 (968)
..+++.|+||.|+.+|+++++.+++.|+++|+||+. .+.++..+++.|++++|+.+|...+.. ...+...++++|.+
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999996 567789999999999999999865311 11234455555555
Q ss_pred hhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCCh
Q 002091 574 LAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNE 653 (968)
Q Consensus 574 La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 653 (968)
++........ .....++++.|+.++.++++
T Consensus 217 l~~~~~~~~~--------------------------------------------------~~~~~~~lp~L~~LL~~~~~ 246 (510)
T 3ul1_B 217 LCRNKNPAPP--------------------------------------------------LDAVEQILPTLVRLLHHNDP 246 (510)
T ss_dssp HHCCCSSCCC--------------------------------------------------HHHHHHHHHHHHHHTTCSCH
T ss_pred HhhcccchhH--------------------------------------------------HHHHHhHHHHHHHHHhcCCH
Confidence 5543221111 11223678999999999999
Q ss_pred hHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHH
Q 002091 654 NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNF 732 (968)
Q Consensus 654 ~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~l 732 (968)
+++..|+++|++|+ .+.++....+...|+++.|+.+|.+ .+..++..++++|+|++. ++..+..+++.|+++.|+.+
T Consensus 247 ~v~~~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 324 (510)
T 3ul1_B 247 EVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 324 (510)
T ss_dssp HHHHHHHHHHHHHT-SSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-C
T ss_pred HHHHHHHHHHHHHh-hchhhhHHHHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHH
Confidence 99999999999999 6677777788899999999999988 567899999999999999 99999999999999999999
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCC
Q 002091 733 LKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 812 (968)
Q Consensus 733 L~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~ 812 (968)
|.+ ++..+++.|+|+|+|++.+ +++.++.+.+.|++|.|+.++.++++.+|..|+|+|+|++...
T Consensus 325 L~~------~~~~v~~~A~~aL~nl~a~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~-------- 389 (510)
T 3ul1_B 325 LTN------PKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG-------- 389 (510)
T ss_dssp TTC------SSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------
T ss_pred hcC------CCHHHHHHHHHHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC--------
Confidence 998 6788999999999999997 8899999999999999999999999999999999999998422
Q ss_pred CCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccc---cchhhHHHH
Q 002091 813 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGER---LQNGSKVLE 888 (968)
Q Consensus 813 ~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~---~~~~~~~i~ 888 (968)
+.++...|++.|++++|+++|.+.|++++..++.+|.++. .+++ .+..+..+.
T Consensus 390 -----------------------~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie 446 (510)
T 3ul1_B 390 -----------------------TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 446 (510)
T ss_dssp -----------------------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHH
Confidence 5677788999999999999999999999999999999998 3322 235677899
Q ss_pred hcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 889 DANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 889 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
+.||++.|..|..++|++++++|..+|+++|..++
T Consensus 447 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 481 (510)
T 3ul1_B 447 ECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481 (510)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999999999999999999999999997553
No 6
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.6e-37 Score=369.41 Aligned_cols=481 Identities=16% Similarity=0.153 Sum_probs=402.2
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHh-CCchHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhhH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAK-ANYFKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKA 497 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~-~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~~~~~~ 497 (968)
.|++|.|+.+|+++++.+++.|+.+|.+++.+++++..+.. .|++++|++.|.++ +++++..++.+|.+|+..++++.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 69999999999999999999999999999998888887776 48999999999876 89999999999999999999999
Q ss_pred HHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCC-CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 498 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
.+++.|+++.|+++|+++++.++..|+++|.+|+.. +.++..+++.|+++.|+++|.+++ ..++..++.+|.+++.
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~---~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN---VKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC---HHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999974 567888889999999999998754 7788889999999997
Q ss_pred Cc-ccccCCCCccccccchhHHHHHHHhhccCC-HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChh
Q 002091 577 ST-MYQESSQTPVTLLESDKEIFMLFSLINLTG-PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNEN 654 (968)
Q Consensus 577 ~~-~~~~~~~~~~~il~~~~~i~~l~~ll~~~~-~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 654 (968)
.. ..+. .+...++++.++.++...+ ...+..++.+|.+++.++ ..+..+.+.|+++.|+.++.++++.
T Consensus 173 ~~~~~~~-------~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T 1jdh_A 173 GNQESKL-------IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp TCHHHHH-------HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST---THHHHHHHTTHHHHHHTTTTSSCHH
T ss_pred CCHHHHH-------HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc---ccHHHHHHCCCHHHHHHHHhCCChH
Confidence 43 2222 3455688999999998554 456777899999999654 3456778889999999999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHh
Q 002091 655 VRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFL 733 (968)
Q Consensus 655 v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL 733 (968)
++..++++|.+|+...... ....+.++.|+++|.+ .+.+++..|+++|++|+. +++.++.+.+.|+++.|+.+|
T Consensus 243 ~~~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll 317 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Confidence 9999999999998433221 1234789999999976 678899999999999999 788999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHhhccCCC--CHHHHHHHHHcCChHHHHHHhhcCC-hHHHHHHHHHHhhhcccCCCCCCC
Q 002091 734 KNGRQNDPNRFQVVENAVGALRRFTAPT--NLEWQKRAAEAGVIPKLVQLLEYGT-TLTKEHAATSLARFSKNSLGLSRP 810 (968)
Q Consensus 734 ~~~~~~~~~~~~v~e~a~~aL~~L~~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~nl~~~s~~l~~~ 810 (968)
.+.. .+..+++.++++|+|++... ++..+..+.+.|++|.|+.+|.+++ +.++..++|+|+|++.+
T Consensus 318 ~~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~------- 386 (529)
T 1jdh_A 318 LRAG----DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC------- 386 (529)
T ss_dssp HHHT----TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-------
T ss_pred HccC----CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-------
Confidence 8722 23689999999999999862 2336788999999999999999876 59999999999999842
Q ss_pred CCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHh-----------------
Q 002091 811 IPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVT----------------- 873 (968)
Q Consensus 811 ~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~----------------- 873 (968)
.+....+.+.|++++|+.+|.+.++.++..+++++.|
T Consensus 387 --------------------------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~ 440 (529)
T 1jdh_A 387 --------------------------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 440 (529)
T ss_dssp --------------------------GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHH
T ss_pred --------------------------hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHH
Confidence 2234567899999999999998777777766555554
Q ss_pred -----hhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhccc-CCchhhhhcccCCchh
Q 002091 874 -----LIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKS-AQMPLVDLTQRGNSSM 947 (968)
Q Consensus 874 -----L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~Lv~ll~~~~~~~ 947 (968)
|+. ..+.+..+.+.|+++.|+.++.++++.+++.+.++|.++..+++....+... +...|.+++.+.++++
T Consensus 441 ~al~~L~~---~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v 517 (529)
T 1jdh_A 441 GALHILAR---DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGV 517 (529)
T ss_dssp HHHHHHTT---SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHH
T ss_pred HHHHHHhc---CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHH
Confidence 441 1245667889999999999999999999999999999998877777776654 4778999999999999
Q ss_pred hHHHHHHHHHH
Q 002091 948 KSLSARVLAHL 958 (968)
Q Consensus 948 ~~~A~~aL~~L 958 (968)
+++|..+|.+|
T Consensus 518 ~~~a~~aL~~l 528 (529)
T 1jdh_A 518 ATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999987
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.9e-37 Score=365.89 Aligned_cols=413 Identities=19% Similarity=0.280 Sum_probs=351.5
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccC--CchhHHHHHhCCchHHHHHHHhcC-CHHHHHHHHHHHHHhccC-chhh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSF--SDDNVVQMAKANYFKHLLQRLSAG-PESVKMRMATTLAEMELT-DHHK 496 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~--~~~n~~~i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~-~~~~ 496 (968)
..++.++..+.|+|+..+..|+..+.++.. ..+....+++.|+++.|+.+|+.+ ++.++..|+++|.+++.. ++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 458899999999999999999999998743 334578889999999999999755 589999999999999764 4667
Q ss_pred HHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCC--CcchHHHHHHHHHH
Q 002091 497 ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSS--SSSLREETATAIMH 573 (968)
Q Consensus 497 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~--~~~~~~~a~~~L~~ 573 (968)
..+++.|+||.|+.+|.++++.+++.|+++|+||+. +++++..+++.|++++|+.+|...... ...+...++++|.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999996 568899999999999999999864311 11234455555555
Q ss_pred hhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCCh
Q 002091 574 LAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNE 653 (968)
Q Consensus 574 La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 653 (968)
++.+..... . .....++++.|+.++.++++
T Consensus 236 l~~~~~~~~-----------------------------------------------~---~~~~~~~lp~L~~LL~~~~~ 265 (529)
T 3tpo_A 236 LCRNKNPAP-----------------------------------------------P---LDAVEQILPTLVRLLHHNDP 265 (529)
T ss_dssp HHCCCTTCC-----------------------------------------------C---HHHHHHHHHHHHHHTTSSCH
T ss_pred HHhcccchh-----------------------------------------------h---HHHHhhHHHHHHHHhcCCcH
Confidence 554321111 1 11223679999999999999
Q ss_pred hHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHH
Q 002091 654 NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNF 732 (968)
Q Consensus 654 ~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~l 732 (968)
+++..|+++|.+++ .+.++....+...|+++.|+.+|.+ .+..++..++++|+||+. ++..+..+++.|+++.|+.+
T Consensus 266 ~v~~~a~~aL~~l~-~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 343 (529)
T 3tpo_A 266 EVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 343 (529)
T ss_dssp HHHHHHHHHHHHHH-SSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred HHHHHHHHHHHHhh-hhhhhhHHHHHhccchHHHHHHhcC-CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH
Confidence 99999999999999 6777777788899999999999988 577899999999999999 99999999999999999999
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCC
Q 002091 733 LKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 812 (968)
Q Consensus 733 L~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~ 812 (968)
|.+ ++..+++.|+|+|+|++.+ ++.....+.+.|++|.|+.++.+++..++..|+|+|+|++.+.
T Consensus 344 L~~------~~~~i~~~a~~aL~nl~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~-------- 408 (529)
T 3tpo_A 344 LTN------PKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG-------- 408 (529)
T ss_dssp TTC------SSHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS--------
T ss_pred HcC------CCHHHHHHHHHHHHHHhcc-cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC--------
Confidence 998 6788999999999999998 8889999999999999999999999999999999999998422
Q ss_pred CCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccc---cchhhHHHH
Q 002091 813 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGER---LQNGSKVLE 888 (968)
Q Consensus 813 ~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~---~~~~~~~i~ 888 (968)
+.++...|++.|+|++|+++|.+.|++++..++.+|.++. .+++ .......+.
T Consensus 409 -----------------------~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie 465 (529)
T 3tpo_A 409 -----------------------TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 465 (529)
T ss_dssp -----------------------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH
Confidence 5677788999999999999999999999999999999998 3322 234577889
Q ss_pred hcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 889 DANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 889 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
+.||++.|..|..++|.+|+++|..+|+++|..++
T Consensus 466 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 466 ECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp HTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999999999999999999999999997543
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=6.6e-38 Score=375.71 Aligned_cols=444 Identities=14% Similarity=0.103 Sum_probs=376.1
Q ss_pred chhHHHHHHhhccC-hHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCc--hhH
Q 002091 379 DDAVESIVRSLGRR-IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSD--DNV 455 (968)
Q Consensus 379 ~~~v~~lv~~L~~~-~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~--~n~ 455 (968)
.|+++.++..+++. ...++.|+..+...+.++..|+.|.+ .|+ |.|+.++++++..++..|+.+|.+++... ++.
T Consensus 289 ~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~-~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~ 366 (810)
T 3now_A 289 EGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCE-QGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAA 366 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHH-HHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTS
T ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHH-cCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCcc
Confidence 89999999999764 45788999999998889999999998 675 99999999999999999999999997432 333
Q ss_pred HHHHhCCch----HHHHHHHhcC--CHHHHHHHHHHHHHhccCchhhHHHhh-cCchHHHHHhhhcCCHHHHHHHHHHHH
Q 002091 456 VQMAKANYF----KHLLQRLSAG--PESVKMRMATTLAEMELTDHHKASLLE-GNVLGPLLHLVSRGDIQMKKVAVKALR 528 (968)
Q Consensus 456 ~~i~~~g~v----~~Lv~~L~~~--~~~~~~~aa~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 528 (968)
...++.|.+ +.++++|.++ +++.+..|+++|++|+..++.|..++. .|+||.|+++|+++++.++..|+++|.
T Consensus 367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~ 446 (810)
T 3now_A 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFV 446 (810)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334445554 4566777777 788999999999999999999999885 899999999999999999999999999
Q ss_pred HhcCCCc------------------------------cH---HHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 529 NLSSVPQ------------------------------NG---LQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 529 ~Ls~~~~------------------------------~~---~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
||+...+ ++ +.++++|++|.|+.+|.+++ +.++++|+++|.||+
T Consensus 447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s---~~vqe~Aa~aL~NLA 523 (810)
T 3now_A 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES---HNSQELIARVLNAVC 523 (810)
T ss_dssp HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC---HHHHHHHHHHHHHHH
T ss_pred HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC---HHHHHHHHHHHHHHc
Confidence 9996331 12 67889999999999999765 899999999999999
Q ss_pred cCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCC-hh
Q 002091 576 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN-EN 654 (968)
Q Consensus 576 ~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~ 654 (968)
.++..+. .+...|+++.|+.++.++++..++.++++|.+|+.+.++..........++++.|+.+|.+++ ..
T Consensus 524 ~d~~~r~-------~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l 596 (810)
T 3now_A 524 GLKELRG-------KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL 596 (810)
T ss_dssp TSHHHHH-------HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHH
T ss_pred CCHHHHH-------HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHH
Confidence 8766554 466789999999999999999999999999999975443321100012358999999998663 44
Q ss_pred HHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHH-cCCHHHHHHHh
Q 002091 655 VRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD-AGALPIVLNFL 733 (968)
Q Consensus 655 v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~-~g~l~~Lv~lL 733 (968)
.+..|+++|.||+ .++++....+++.|+++.|+.+|.+. +..++.+|+++|+||+.+++....+.+ .|+++.|+.++
T Consensus 597 ~~~eAl~AL~NLa-~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL 674 (810)
T 3now_A 597 ENFESLMALTNLA-SMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC 674 (810)
T ss_dssp HHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGG
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHh
Confidence 5678999999999 66677888889999999999999985 557999999999999996667666665 78999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHH-cCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCC
Q 002091 734 KNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE-AGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 812 (968)
Q Consensus 734 ~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~ 812 (968)
.+ .+..+++.|+|+|++++.+ ++...+.+.+ .|++|.|+.+|.++++++|..|+|+|.|++..
T Consensus 675 ~s------~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~--------- 738 (810)
T 3now_A 675 ED------EDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA--------- 738 (810)
T ss_dssp GC------SSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT---------
T ss_pred cC------CCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC---------
Confidence 98 6788999999999999986 6777788888 89999999999999999999999999999831
Q ss_pred CCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCC---ChhhhHHHHHHHHhhh
Q 002091 813 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDP---DHGACEASLDALVTLI 875 (968)
Q Consensus 813 ~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~---~~~v~~~al~aL~~L~ 875 (968)
+.++...++++|++++|+.+|... +.++.+.|+.||.++.
T Consensus 739 -----------------------s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 739 -----------------------GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp -----------------------CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 345678899999999999999754 6789999999999998
No 9
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=6.3e-37 Score=377.87 Aligned_cols=519 Identities=17% Similarity=0.159 Sum_probs=423.7
Q ss_pred chhHHHHHHhhccC-hHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHH
Q 002091 379 DDAVESIVRSLGRR-IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQ 457 (968)
Q Consensus 379 ~~~v~~lv~~L~~~-~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~ 457 (968)
..+++.++..|.+. .+.+..++..++.. .+..+. .|+||.|+.+|.++++.+++.|+.+|.+++.++.++..
T Consensus 114 ~~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 114 DSAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp ------------CCSCHHHHHHHHHHHHH-----HHHHHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred cccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHH
Confidence 44577788888653 45666677776643 334554 59999999999999999999999999999998888888
Q ss_pred HHh-CCchHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCC-C
Q 002091 458 MAK-ANYFKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-P 534 (968)
Q Consensus 458 i~~-~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~ 534 (968)
+.. .|+++.|++.|+.+ +++++..|+.+|++|+..++++..+++.|+|+.|+++|+++++.++..|+++|.||+.. +
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh
Confidence 875 48999999999876 89999999999999999888999999999999999999999999999999999999974 5
Q ss_pred ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcC-cccccCCCCccccccchhHHHHHHHhhccCCH-HHH
Q 002091 535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS-TMYQESSQTPVTLLESDKEIFMLFSLINLTGP-NVQ 612 (968)
Q Consensus 535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~-~~~ 612 (968)
..+..+.+.|+++.|+++|.+.+ ..++..++.+|.+++.. .+.+. .+...++++.|+.++...++ ..+
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL~~~~---~~v~~~a~~aL~~La~~~~e~~~-------~i~~~~~i~~Lv~lL~~~~~~~~~ 336 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALLNKTN---VKFLAITTDCLQILAYGNQESKL-------IILASGGPQALVNIMRTYTYEKLL 336 (780)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCC---HHHHHHHHHHHHHHHTTCHHHHH-------HHHTTTHHHHHHHHHTTCCCHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhcCC---HHHHHHHHHHHHHHhcCChHHHH-------HHHHcCCHHHHHHHHhcCCHHHHH
Confidence 66777778999999999998754 67889999999999863 23332 34455889999999986654 566
Q ss_pred HHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhc
Q 002091 613 QRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQ 692 (968)
Q Consensus 613 ~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~ 692 (968)
..++.+|.+|+.++ ..+..+.+.|+++.|+.++.+++..++..|+++|.+|+..... .....++++.|+.+|.
T Consensus 337 ~~a~~aL~~Ls~~~---~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~----~~~~~~~i~~Lv~lL~ 409 (780)
T 2z6g_A 337 WTTSRVLKVLSVCS---SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLG 409 (780)
T ss_dssp HHHHHHHHHHHTST---THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCh---HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh----hhhhhhHHHHHHHHHc
Confidence 68899999999754 3456777889999999999999999999999999999843322 1123478999999998
Q ss_pred cCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCH--HHHHHH
Q 002091 693 SSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNL--EWQKRA 769 (968)
Q Consensus 693 ~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~--~~~~~~ 769 (968)
+ .+.+++..|+++|++|+. ++..+..+.+.|+++.|+.+|.+.. ....+++.|+++|+||+..... ..+..+
T Consensus 410 ~-~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v 484 (780)
T 2z6g_A 410 S-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG----DREDITEPAICALRHLTSRHQDAEMAQNAV 484 (780)
T ss_dssp C-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccC----CHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 7 577899999999999999 8889999999999999999998721 1247999999999999975211 246688
Q ss_pred HHcCChHHHHHHhhcCCh-HHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCC
Q 002091 770 AEAGVIPKLVQLLEYGTT-LTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANA 848 (968)
Q Consensus 770 ~~~g~i~~Lv~lL~~~~~-~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~ 848 (968)
.+.|++|.|+.+|.+++. .++..|+|+|+|++.. .+....+.+.|+
T Consensus 485 ~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~---------------------------------~~~~~~i~~~g~ 531 (780)
T 2z6g_A 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC---------------------------------PANHAPLREQGA 531 (780)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS---------------------------------HHHHHHHHHTTH
T ss_pred HHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC---------------------------------HHHHHHHHHCCC
Confidence 899999999999998765 9999999999999841 223456788999
Q ss_pred hHHHHhhccCCC----------------------hhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCCh
Q 002091 849 VRPLVRVLEDPD----------------------HGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSP 905 (968)
Q Consensus 849 i~~Lv~lL~~~~----------------------~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~ 905 (968)
++.|+.+|.+.+ .++++.++.+|.+|+ +. ..+..+.+.|+++.|+.++.++++
T Consensus 532 i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~----~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI----HNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH----HHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh----hhHHHHHHCCcHHHHHHHHcCCCH
Confidence 999999997543 346778889999998 33 566788899999999999999999
Q ss_pred HHHHHHHHHHHHHhcChhhHHHhccc-CCchhhhhcccCCchhhHHHHHHHHHHhhccc
Q 002091 906 KLQEKALDSVERIFRLPEFKQKYGKS-AQMPLVDLTQRGNSSMKSLSARVLAHLNVLQD 963 (968)
Q Consensus 906 ~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~~~ 963 (968)
.++..|+.+|.++..+++++..+... +...|++++.++++++|..|..+|.+|.....
T Consensus 608 ~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999999999888888777765 47789999999999999999999999987543
No 10
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=369.64 Aligned_cols=484 Identities=16% Similarity=0.163 Sum_probs=413.1
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhC-CchHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhhH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKA-NYFKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKA 497 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~-g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~~~~~~ 497 (968)
.|+++.|+.+|+++++.++..|+.+|.+++.++.++..++.. |+++.|++.|.++ +++++..|+.+|.+|+..++++.
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 699999999999999999999999999999888888888764 8999999999876 89999999999999999999999
Q ss_pred HHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCC-CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 498 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
.+.+.|+++.|+++|+++++.++..|+++|.+|+.. +.++..+++.|+++.|+++|.+.+ ..++..++.+|.+|+.
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN---VKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC---HHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC---HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999964 567778889999999999998764 6677778889999996
Q ss_pred -CcccccCCCCccccccchhHHHHHHHhhccCC-HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChh
Q 002091 577 -STMYQESSQTPVTLLESDKEIFMLFSLINLTG-PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNEN 654 (968)
Q Consensus 577 -~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~-~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 654 (968)
.+..+. .+...++++.|+.++...+ ...+..++++|.+++.++ ..+..+.+.|+++.|+.++.+++..
T Consensus 170 ~~~~~~~-------~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~---~~~~~l~~~g~l~~L~~ll~~~~~~ 239 (644)
T 2z6h_A 170 GNQESKL-------IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVEAGGMQALGLHLTDPSQR 239 (644)
T ss_dssp TCHHHHH-------HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT---THHHHHHHTTHHHHHHTTTTCSCHH
T ss_pred cCcHHHH-------HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc---ccHHHHHHCCCHHHHHHHHhcCCHH
Confidence 333333 3556688999999998654 578889999999999654 4466788889999999999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHh
Q 002091 655 VRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFL 733 (968)
Q Consensus 655 v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL 733 (968)
++..++++|.+|+..... .....+.++.|+.+|.+ .+.+++..|+++|++|+. ++..++.+.+.|+++.|+.+|
T Consensus 240 ~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~-~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL 314 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314 (644)
T ss_dssp HHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999843322 11234789999999986 578899999999999999 788999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHhhccCCC--CHHHHHHHHHcCChHHHHHHhhcCC-hHHHHHHHHHHhhhcccCCCCCCC
Q 002091 734 KNGRQNDPNRFQVVENAVGALRRFTAPT--NLEWQKRAAEAGVIPKLVQLLEYGT-TLTKEHAATSLARFSKNSLGLSRP 810 (968)
Q Consensus 734 ~~~~~~~~~~~~v~e~a~~aL~~L~~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~nl~~~s~~l~~~ 810 (968)
.+.. ....+++.++++|++|+... +...+..+.+.|+++.|+.+|.+.+ +.++..|+|+|+|++..
T Consensus 315 ~~~~----~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~------- 383 (644)
T 2z6h_A 315 LRAG----DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC------- 383 (644)
T ss_dssp HHHT----TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-------
T ss_pred HccC----CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-------
Confidence 8721 12689999999999999752 1245666889999999999999875 69999999999999842
Q ss_pred CCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCC----------------------hhhhHHHH
Q 002091 811 IPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD----------------------HGACEASL 868 (968)
Q Consensus 811 ~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~----------------------~~v~~~al 868 (968)
.+....+++.|+++.|+.+|.+.+ ..+++.++
T Consensus 384 --------------------------~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~ 437 (644)
T 2z6h_A 384 --------------------------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 437 (644)
T ss_dssp --------------------------GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHH
Confidence 223467889999999999998643 34677788
Q ss_pred HHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccC-CchhhhhcccCCch
Q 002091 869 DALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSA-QMPLVDLTQRGNSS 946 (968)
Q Consensus 869 ~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~Lv~ll~~~~~~ 946 (968)
.+|.+|+ +. ..+..+.+.|+++.|++++.++++.+++.|+++|.++..+++++..+...+ ...|++++++++++
T Consensus 438 ~aL~~La~~~----~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~ 513 (644)
T 2z6h_A 438 GALHILARDV----HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 513 (644)
T ss_dssp HHHHHHTTSH----HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHH
T ss_pred HHHHHHhcCH----HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHH
Confidence 8888888 33 566788899999999999999999999999999999998888877776544 67899999999999
Q ss_pred hhHHHHHHHHHHhhcc
Q 002091 947 MKSLSARVLAHLNVLQ 962 (968)
Q Consensus 947 ~~~~A~~aL~~L~~~~ 962 (968)
+++.|+.+|.+|....
T Consensus 514 vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 514 VATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987644
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.6e-34 Score=339.27 Aligned_cols=411 Identities=19% Similarity=0.268 Sum_probs=356.9
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccC-Cc-hhHHHHHhCCchHHHHHHHhcCC-HHHHHHHHHHHHHhccC-chhh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSF-SD-DNVVQMAKANYFKHLLQRLSAGP-ESVKMRMATTLAEMELT-DHHK 496 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~-~~-~n~~~i~~~g~v~~Lv~~L~~~~-~~~~~~aa~~L~~L~~~-~~~~ 496 (968)
..+|.|+..|.++++.++..|+..|.++.. .. ++...+++.|+++.|+.+|.+++ +.++..|+++|.+++.. ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999953 33 67888999999999999999886 99999999999999775 6788
Q ss_pred HHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 497 ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 497 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
..+.+.|+++.|+.+|+++++.++..|+++|++|+. .+.++..+.+.|++++|+.+|.... ...++..++++|.+|+
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~--~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT--KLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC--CHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999995 4677899999999999999995432 2678888888888887
Q ss_pred cCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhH
Q 002091 576 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENV 655 (968)
Q Consensus 576 ~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v 655 (968)
....... .....++++.|+.++.++++.+
T Consensus 232 ~~~~~~~---------------------------------------------------~~~~~~~l~~L~~lL~~~~~~v 260 (528)
T 4b8j_A 232 RGKPQPS---------------------------------------------------FEQTRPALPALARLIHSNDEEV 260 (528)
T ss_dssp CSSSCCC---------------------------------------------------HHHHTTHHHHHHHHTTCCCHHH
T ss_pred cCCCCCc---------------------------------------------------HHHHHHHHHHHHHHHCCCCHHH
Confidence 6431111 0112478999999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhh
Q 002091 656 RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK 734 (968)
Q Consensus 656 ~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~ 734 (968)
+..|+++|.+|+ .+.+.....++..|+++.|+.+|.+. +..++..|+++|+||+. ++...+.+++.|+++.|+.+|.
T Consensus 261 ~~~a~~aL~~l~-~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 261 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp HHHHHHHHHHHT-SSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 999999999999 66666677788889999999999885 67899999999999999 8899999999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 002091 735 NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKR 814 (968)
Q Consensus 735 ~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~ 814 (968)
++ .+..+++.|+|+|+|++.+ +++....+.+.|++|.|+.+|.++++.++..|+++|+|++...
T Consensus 339 ~~-----~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~---------- 402 (528)
T 4b8j_A 339 QN-----LKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG---------- 402 (528)
T ss_dssp SC-----CCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS----------
T ss_pred CC-----CcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC----------
Confidence 82 1688999999999999986 7888889999999999999999999999999999999998431
Q ss_pred CcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccc--------cchhhH
Q 002091 815 KGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGER--------LQNGSK 885 (968)
Q Consensus 815 ~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~--------~~~~~~ 885 (968)
+++....+++.|++++|+.+|.+.++.++..++.+|.+++ .+.. ...+..
T Consensus 403 ---------------------~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 461 (528)
T 4b8j_A 403 ---------------------SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ 461 (528)
T ss_dssp ---------------------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHH
T ss_pred ---------------------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHH
Confidence 3456777889999999999999999999999999999999 4322 234788
Q ss_pred HHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 886 VLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 886 ~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
.+.+.||++.|..++.++++.+++.|.+++.++|..++
T Consensus 462 ~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 462 MIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999999999999999999999999999997654
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.4e-33 Score=335.25 Aligned_cols=411 Identities=20% Similarity=0.274 Sum_probs=357.7
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCC--chhHHHHHhCCchHHHHHHHhcC-CHHHHHHHHHHHHHhccC-chh
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFS--DDNVVQMAKANYFKHLLQRLSAG-PESVKMRMATTLAEMELT-DHH 495 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~--~~n~~~i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~-~~~ 495 (968)
.+.++.|+..|.++++.++..|+..|.++... ++++..+++.|+++.|+.+|.++ ++.++..|+++|.+++.. ++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 47799999999999999999999999999643 45677888999999999999997 899999999999999774 467
Q ss_pred hHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCC-CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHh
Q 002091 496 KASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL 574 (968)
Q Consensus 496 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L 574 (968)
+..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. +.++..+++.|+++.|+.+|.+.+ ..++..|+++|.+|
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK---PSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC---HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC---HHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999975 578888899999999999998743 67888888888888
Q ss_pred hcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChh
Q 002091 575 AVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNEN 654 (968)
Q Consensus 575 a~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 654 (968)
+........ .....++++.|+.++.++++.
T Consensus 243 ~~~~~~~~~--------------------------------------------------~~~~~~~l~~L~~lL~~~d~~ 272 (530)
T 1wa5_B 243 CRGKKPQPD--------------------------------------------------WSVVSQALPTLAKLIYSMDTE 272 (530)
T ss_dssp HCCSSSCCC--------------------------------------------------HHHHGGGHHHHHHHTTCCCHH
T ss_pred hCCCCCCCc--------------------------------------------------HHHHHhHHHHHHHHHcCCCHH
Confidence 864311110 112247899999999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHh
Q 002091 655 VRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFL 733 (968)
Q Consensus 655 v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL 733 (968)
++..|+++|.+|+ .+.++....+++.|+++.|+.+|.+ .+..++..|+++|++|+. ++...+.+.+.|+++.|+.+|
T Consensus 273 v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 273 TLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp HHHHHHHHHHHHH-SSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence 9999999999998 6666667777888999999999987 577899999999999998 888889999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCC
Q 002091 734 KNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPK 813 (968)
Q Consensus 734 ~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~ 813 (968)
.+ .+..+++.|+++|++++.+ +++..+.+.+.|++|.|+.+|.++++.++..|+++|++++...
T Consensus 351 ~~------~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--------- 414 (530)
T 1wa5_B 351 SS------PKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG--------- 414 (530)
T ss_dssp TC------SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT---------
T ss_pred cC------CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---------
Confidence 98 5688999999999999987 7787888889999999999999999999999999999998422
Q ss_pred CCcccccCCCCCcccccCCCccCc--ccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccc--------cch
Q 002091 814 RKGFWCFSPPPEIGCQVHGGLCGI--ESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGER--------LQN 882 (968)
Q Consensus 814 ~~~~~~~~~~~~~~c~~h~~~c~~--~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~--------~~~ 882 (968)
++ ++...+++.|++++|+.+|.+.++.++..++++|.+++ .... ...
T Consensus 415 ----------------------~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~ 472 (530)
T 1wa5_B 415 ----------------------LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINE 472 (530)
T ss_dssp ----------------------TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCH
T ss_pred ----------------------CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccH
Confidence 22 56677889999999999999999999999999999999 4322 235
Q ss_pred hhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 883 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 883 ~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
++..+.+.||++.|..++.++++.+++.|.++|.++|..++
T Consensus 473 ~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 473 NADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 67889999999999999999999999999999999997654
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.5e-34 Score=331.27 Aligned_cols=388 Identities=18% Similarity=0.206 Sum_probs=328.4
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCC--chh
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFS--DDN 454 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~--~~n 454 (968)
.++++.++.+|.+ +.+.+..|+..|.+++. +++++..|.+ .|+||.||.+|++++..+++.|+.+|.||+.+ ++|
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 6789999999965 45688999999999997 8899999999 89999999999999999999999999999974 789
Q ss_pred HHHHHhCCchHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhh------------------cC
Q 002091 455 VVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS------------------RG 515 (968)
Q Consensus 455 ~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~------------------~~ 515 (968)
|..+++.|++++|+.+|++ ++.+++++++++|++|+.++++|..|++ ++|++|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence 9999999999999999998 5789999999999999999999999996 57999999872 12
Q ss_pred CHHHHHHHHHHHHHhcCCC-ccHHHHHHc-CChHHHHHHhccc---CCCCcchHHHHHHHHHHhhcCcccc---------
Q 002091 516 DIQMKKVAVKALRNLSSVP-QNGLQMIKE-GAVGPLVDLLLHH---SSSSSSLREETATAIMHLAVSTMYQ--------- 581 (968)
Q Consensus 516 ~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~-g~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~~~~~--------- 581 (968)
++.++++|+++|+||+.+. ++|..+++. |+++.|+.+|.+. .......+++|+++|.||+......
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 5799999999999999865 459999986 5578999999752 1122678999999999999752100
Q ss_pred ----------cCCCCccccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCC--hhhHHHHHhhcCchHHHHHhh
Q 002091 582 ----------ESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPS--AGNIKTTLTQCSAIPVLVQLC 648 (968)
Q Consensus 582 ----------~~~~~~~~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~--~~~~~~~i~~~g~i~~Lv~ll 648 (968)
...+.++..+...++++.++.++. +.++.++++++++|.+||.+.. ...++..+++.++++.|+.++
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 012345666777888999999996 6689999999999999997532 235666788888999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCC-------CHHHHHHHHHHHhcCCC-CHHhHHHH
Q 002091 649 EHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH-------NEEEIASAMGILSKLPE-VPQFTQWL 720 (968)
Q Consensus 649 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-------~~~~~~~Al~~L~nL~~-~~~~~~~l 720 (968)
.+++..++..|+++|+||+.... .. ..+..|+++.|+.+|.+.+ ..++...|+++|+||+. +++.++.+
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~--~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I 441 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDAR--NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCS--CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChh--HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999994332 22 3457899999999998863 46788999999999988 99999999
Q ss_pred HHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHH
Q 002091 721 LDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 777 (968)
Q Consensus 721 ~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~ 777 (968)
.+.|+++.|+.+++++. ....+++.|+++|++++. ..+.+..+.+.|+-..
T Consensus 442 ~~~g~I~~Lv~LL~s~~----~~~~v~k~Aa~vL~nl~~--~~elr~~~kk~G~~~~ 492 (584)
T 3l6x_A 442 RETQGIEKLVLINKSGN----RSEKEVRAAALVLQTIWG--YKELRKPLEKEGWKKS 492 (584)
T ss_dssp HHTTHHHHHHHHHTCSS----SCHHHHHHHHHHHHHHHT--SHHHHHHHHTTTCCGG
T ss_pred HHCCChHHHHHHHhCCC----CChHHHHHHHHHHHHHHc--CHHHHHHHHHcCCCHH
Confidence 99999999999999842 256899999999999998 7999999988876443
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.8e-34 Score=334.64 Aligned_cols=409 Identities=19% Similarity=0.222 Sum_probs=318.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccCCc-hhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHH
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSFSD-DNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASL 499 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~-~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i 499 (968)
.+|.|+.+|+++++.++..|+.+|.+++.++ +++..+++.|+++.|+++|+++++.++..|+++|.+|+.. +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4899999999999999999999999999654 5687999999999999999999999999999999999875 8999999
Q ss_pred hhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhccc-----CCCCcchHHHHHHHHHH
Q 002091 500 LEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH-----SSSSSSLREETATAIMH 573 (968)
Q Consensus 500 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~~~~a~~~L~~ 573 (968)
++.|+||+|+++|+ ++++++++.|+++|+||+.+++++..+++ |++++|+++|..+ .....+.++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e-------- 153 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE-------- 153 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC-----------------
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc--------
Confidence 99999999999999 88999999999999999998999999999 9999999999531 000001000
Q ss_pred hhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhc-CchHHHHHhhcc--
Q 002091 574 LAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC-SAIPVLVQLCEH-- 650 (968)
Q Consensus 574 La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~-g~i~~Lv~ll~~-- 650 (968)
..++.++..++|+|.+||.. ++.+..+.+. |+++.|+.++.+
T Consensus 154 --------------------------------~~~~~v~~~a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 154 --------------------------------VVDPEVFFNATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp --------------------------------CCCHHHHHHHHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred --------------------------------cccHHHHHHHHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 12467777888888888864 5677788887 999999999986
Q ss_pred ----CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcC----------------
Q 002091 651 ----DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKL---------------- 710 (968)
Q Consensus 651 ----~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL---------------- 710 (968)
.+..++++++.+|++|+ ..... .. ......+...++.... .....+++++.
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs-~~~~~----~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLS-YRLDA----EV-PTRYRQLEYNARNAYT---EKSSTGCFSNKSDKMMNNNYDCPLPEE 269 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHT-TTHHH----HS-CCHHHHHHHTC-------------------------------CCCC
T ss_pred cccCCchHHHHHHHHHHHhcc-cchhc----cC-cchhhhcccccccccc---cccccchhhccchhhhhccccCCcccc
Confidence 45678999999999997 22110 00 1111111111111000 00111222221
Q ss_pred CCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCH---HH-HHHHHHcCChHHHHHHhhcCC
Q 002091 711 PEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNL---EW-QKRAAEAGVIPKLVQLLEYGT 786 (968)
Q Consensus 711 ~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~---~~-~~~~~~~g~i~~Lv~lL~~~~ 786 (968)
...+...+.+++.|+++.++.+|.++ .+..+++.|+|+|+|++.+..+ .. +..+.+.|++|.|+++|.+++
T Consensus 270 ~~~~~~~~~l~~~~~l~~L~~lL~~~-----~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~ 344 (457)
T 1xm9_A 270 ETNPKGSGWLYHSDAIRTYLNLMGKS-----KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344 (457)
T ss_dssp CSSCCGGGGGGSHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC
T ss_pred ccCchHHHHHhCcchHHHHHHHHhhc-----CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC
Confidence 11345667788899999999999984 3478999999999999987322 23 334457899999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCCh-----
Q 002091 787 TLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH----- 861 (968)
Q Consensus 787 ~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~----- 861 (968)
+++++.|+|+|.|++.+ .+...++..|++++|+++|...++
T Consensus 345 ~~v~~~A~~aL~nls~~----------------------------------~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 345 SDVVRSGASLLSNMSRH----------------------------------PLLHRVMGNQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp HHHHHHHHHHHHHHHTS----------------------------------GGGHHHHHHHTHHHHHHTTTSCCSCSTTH
T ss_pred HhHHHHHHHHHHHHhcC----------------------------------HHHHHHHHHhhhHHHHHhccCCCCCCCCc
Confidence 99999999999999842 234456777999999999997654
Q ss_pred -hhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCC-ChHHHHHHHHHHHHHhcChhhH
Q 002091 862 -GACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSP-SPKLQEKALDSVERIFRLPEFK 925 (968)
Q Consensus 862 -~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~ 925 (968)
++...++.+|.++. .+ .+....+.+.||+++|++++.++ ++++++.|.++|+++|.+++++
T Consensus 391 ~~v~~~~l~~l~ni~~~~---~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQ---PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHHHHHHHTTC---THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHHHHHhcC---HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 58889999999998 32 26788999999999999999998 9999999999999999988865
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.6e-33 Score=325.65 Aligned_cols=418 Identities=15% Similarity=0.187 Sum_probs=322.8
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccC-CchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc--Cchhh
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL--TDHHK 496 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~-~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~--~~~~~ 496 (968)
.+.||.||.+|.++++.++..|+.+|.+++. ++++|..+++.|+|++|+.+|++++.++++.|+++|.+|+. ++++|
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 5789999999999999999999999999995 77899999999999999999999999999999999999987 47999
Q ss_pred HHHhhcCchHHHHHhhhc-CCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 497 ASLLEGNVLGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 497 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
..|.+.|+|++|+++|++ ++.++++.|+++|+||+.+++++..+++ |++++|++++......... ...
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~-~~~--------- 195 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWER-EPN--------- 195 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC--------------
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccc-ccc---------
Confidence 999999999999999997 5789999999999999999999999996 5799999988421100000 000
Q ss_pred cCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhc-CchHHHHHhhcc----
Q 002091 576 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC-SAIPVLVQLCEH---- 650 (968)
Q Consensus 576 ~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~-g~i~~Lv~ll~~---- 650 (968)
... .+....++.++++++++|.||+.. +.+.+..+++. |+++.|+.++++
T Consensus 196 --~~~---------------------k~~~~~d~~V~~nAa~~L~NLs~~--~~~~R~~i~~~~Gli~~LV~~L~~~~~~ 250 (584)
T 3l6x_A 196 --EDC---------------------KPRHIEWESVLTNTAGCLRNVSSE--RSEARRKLRECDGLVDALIFIVQAEIGQ 250 (584)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred --ccc---------------------cccccccHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCcHHHHHHHHHHhhcc
Confidence 000 001223578888888888888764 44556777765 556899999875
Q ss_pred --CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHH
Q 002091 651 --DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPI 728 (968)
Q Consensus 651 --~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~ 728 (968)
.+...+++|+++|+||+.. .... +-... .+...... .+ . +....+....+.+++.++++.
T Consensus 251 ~~~~~~~~enav~aL~NLs~~-~~~e---~~~~~---~~~~~~~~-~~-------~---~~~~~~~~Gve~L~~~~~v~~ 312 (584)
T 3l6x_A 251 KDSDSKLVENCVCLLRNLSYQ-VHRE---IPQAE---RYQEAAPN-VA-------N---NTGTSPARGYELLFQPEVVRI 312 (584)
T ss_dssp TCCSCHHHHHHHHHHHHHHTT-HHHH---STTCC---C-------------------------CCCCGGGGGGSHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhhcc-cccc---ccchh---hhhhhccc-cc-------c---cccccCchhHHHHhcccHHHH
Confidence 4678999999999999832 2110 00000 01110000 00 0 112234556677777888999
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCC---HHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCC
Q 002091 729 VLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTN---LEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSL 805 (968)
Q Consensus 729 Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~---~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~ 805 (968)
++.+|..+ .+..+++.|+++|+||+.+.. ...+..+.+.+++|.|+.+|.++++.++..|+++|.||+.+.
T Consensus 313 Ll~LL~~s-----~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~- 386 (584)
T 3l6x_A 313 YISLLKES-----KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA- 386 (584)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHccC-----CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-
Confidence 99999863 357899999999999998622 234556667899999999999999999999999999999422
Q ss_pred CCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCC--------hhhhHHHHHHHHhhhcc
Q 002091 806 GLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD--------HGACEASLDALVTLIEG 877 (968)
Q Consensus 806 ~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~--------~~v~~~al~aL~~L~~~ 877 (968)
.....+..|+++.|+.+|.+++ .+++..++++|.|++.+
T Consensus 387 ---------------------------------~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~ 433 (584)
T 3l6x_A 387 ---------------------------------RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433 (584)
T ss_dssp ---------------------------------SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence 1223457899999999999763 46888999999999821
Q ss_pred cccchhhHHHHhcCcHHHHHHHhcCC--ChHHHHHHHHHHHHHhcChhhHHHhcccC
Q 002091 878 ERLQNGSKVLEDANAIDRMVRFLSSP--SPKLQEKALDSVERIFRLPEFKQKYGKSA 932 (968)
Q Consensus 878 ~~~~~~~~~i~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 932 (968)
.......+.+.|+++.|+.++.+. .+.+++.|.++|.+++.+++++..|.+.+
T Consensus 434 --~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G 488 (584)
T 3l6x_A 434 --NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488 (584)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTT
T ss_pred --CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcC
Confidence 126788999999999999999775 89999999999999999999998887765
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.6e-32 Score=317.33 Aligned_cols=410 Identities=17% Similarity=0.226 Sum_probs=347.9
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhccC--CchhHHHHHhC-CchHHHHHHHhcC-CHHHHHHHHHHHHHhccC-chhh
Q 002091 422 CILLLVTMASSDDNQASRDAQELLENLSF--SDDNVVQMAKA-NYFKHLLQRLSAG-PESVKMRMATTLAEMELT-DHHK 496 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~--~~~n~~~i~~~-g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~-~~~~ 496 (968)
.++.|+..++++++.++..|+..|.++.. .++....+.+. |+++.|+..|+++ ++.++..|+++|.+++.. ++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 37889999999999999999999999742 33344556676 9999999999998 899999999999999764 4666
Q ss_pred HHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCC-CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 497 ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 497 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
..+.+.|+++.|+++|+++++.++..|+++|.+|+.. ++++..+++.|+++.|+.++.+.. +..++..++++|++|+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN--RLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC--CHHHHHHHHHHHHHHh
Confidence 6777899999999999999999999999999999975 468888999999999999998532 2678888888888888
Q ss_pred cCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhH
Q 002091 576 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENV 655 (968)
Q Consensus 576 ~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v 655 (968)
........ . .+. .++++.|+.++.++++.+
T Consensus 179 ~~~~~~~~---------------------------------------------~----~~~-~~~l~~L~~~l~~~~~~v 208 (450)
T 2jdq_A 179 RGKSPPPE---------------------------------------------F----AKV-SPCLNVLSWLLFVSDTDV 208 (450)
T ss_dssp CCSSSCCC---------------------------------------------G----GGT-GGGHHHHHHHTTCCCHHH
T ss_pred CCCCCCCC---------------------------------------------H----HHH-HHHHHHHHHHHccCCHHH
Confidence 64311000 0 011 367899999999889999
Q ss_pred HHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhh
Q 002091 656 RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK 734 (968)
Q Consensus 656 ~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~ 734 (968)
+..++++|.+|+ ...++....+...++++.|+.+|.+ .+..++..|+++|++|+. ++...+.+.+.|+++.|+.+|.
T Consensus 209 ~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 209 LADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp HHHHHHHHHHHT-SSSHHHHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-CCCcHHHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc
Confidence 999999999998 5555666677778999999999986 577899999999999999 8888888999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 002091 735 NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKR 814 (968)
Q Consensus 735 ~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~ 814 (968)
+ ++..+++.|+++|++++.+ +++..+.+.+.|++|.|+.+|.++++.+|..|+++|+|++...
T Consensus 287 ~------~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~---------- 349 (450)
T 2jdq_A 287 S------PKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGG---------- 349 (450)
T ss_dssp C------SSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC----------
T ss_pred C------CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC----------
Confidence 8 5678999999999999987 7888888889999999999999999999999999999998421
Q ss_pred CcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccc--------cchhhH
Q 002091 815 KGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGER--------LQNGSK 885 (968)
Q Consensus 815 ~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~--------~~~~~~ 885 (968)
++++...+++.|++++|+.+|.++++.++..++++|.+++ .+.. ..+++.
T Consensus 350 ---------------------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~ 408 (450)
T 2jdq_A 350 ---------------------SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCA 408 (450)
T ss_dssp ---------------------CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHH
T ss_pred ---------------------CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHH
Confidence 3345666788999999999999999999999999999999 3322 235678
Q ss_pred HHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh
Q 002091 886 VLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 923 (968)
Q Consensus 886 ~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 923 (968)
.+.+.||++.|..++.++++.+++.|..+|.++|..++
T Consensus 409 ~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 409 LIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 89999999999999999999999999999999997664
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.3e-32 Score=321.85 Aligned_cols=403 Identities=17% Similarity=0.213 Sum_probs=339.0
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCc--cHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccc
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQ--NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 580 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~--~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 580 (968)
..|+.||+.+.+++++.+..|+.++++|.+... ..+.++++|+||.|+++|...+ .+.++.+|+++|+||+.....
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~--~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD--CSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHTSCHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC--CHHHHHHHHHHHHHHhcCCHH
Confidence 358999999999999999999999999876443 4688999999999999997543 378999999999999875433
Q ss_pred ccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCC-----hhH
Q 002091 581 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN-----ENV 655 (968)
Q Consensus 581 ~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~-----~~v 655 (968)
.. ..+...|+++.|+.++.+.++++++.++|+|.+++.. +.+.+..+.+.|+++.|+.++...+ ..+
T Consensus 135 ~~------~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d--~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~ 206 (510)
T 3ul1_B 135 QT------KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD--GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 206 (510)
T ss_dssp HH------HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHH
T ss_pred HH------HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHcCChHHHHHHHHhccchhhhHHH
Confidence 22 2566789999999999999999999999999999864 5677889999999999999998764 346
Q ss_pred HHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhh
Q 002091 656 RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK 734 (968)
Q Consensus 656 ~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~ 734 (968)
...++++|.+++....+ ........++++.|+.+|.+ .+.+++..|+++|.+|+. +.+..+.+.+.|+++.|+.+|.
T Consensus 207 ~~~a~~~L~nl~~~~~~-~~~~~~~~~~lp~L~~LL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNKNP-APPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHHHHHHHHHHHCCCSS-CCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccc-hhHHHHHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 88899999999843322 11122235789999999987 577899999999999999 8888888999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 002091 735 NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKR 814 (968)
Q Consensus 735 ~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~ 814 (968)
+ .+..++..++++|+|++.+ ++.....+.+.|+++.|+.+|.++++.++..|+|+|+|++..
T Consensus 285 ~------~~~~v~~~al~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~----------- 346 (510)
T 3ul1_B 285 A------TELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----------- 346 (510)
T ss_dssp C------SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS-----------
T ss_pred C------CChhhhhHHHHHHHHhhcC-CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC-----------
Confidence 8 5678999999999999987 888889999999999999999999999999999999999832
Q ss_pred CcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcH
Q 002091 815 KGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAI 893 (968)
Q Consensus 815 ~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i 893 (968)
+.++...+++.|++++|+.+|.+.+..++..|++||.|++ .+. .+....+.+.|++
T Consensus 347 ---------------------~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~--~~~~~~L~~~g~i 403 (510)
T 3ul1_B 347 ---------------------RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT--VEQIVYLVHCGII 403 (510)
T ss_dssp ---------------------CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHTTCH
T ss_pred ---------------------cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC--HHHHHHHHHCCCH
Confidence 3456777889999999999999999999999999999999 332 2556788999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcChh-------hHHHhcccC-CchhhhhcccCCchhhHHHHHHHHHH
Q 002091 894 DRMVRFLSSPSPKLQEKALDSVERIFRLPE-------FKQKYGKSA-QMPLVDLTQRGNSSMKSLSARVLAHL 958 (968)
Q Consensus 894 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~-~~~Lv~ll~~~~~~~~~~A~~aL~~L 958 (968)
++|++++.++++.+...++++|.+|+...+ +...+...+ ...|-.+..+.+.+++++|..+|..-
T Consensus 404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999975321 233343333 45566777789999999999999765
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.1e-32 Score=313.97 Aligned_cols=370 Identities=17% Similarity=0.211 Sum_probs=310.9
Q ss_pred hHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCC-chhHHH
Q 002091 381 AVESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFS-DDNVVQ 457 (968)
Q Consensus 381 ~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~-~~n~~~ 457 (968)
.++.+++.|.+ +++.+..|+..|++++. ++.++..+.+ .|+||.|+.+|+++++.++..|+.+|.||+.+ ++|+..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 47788888855 56789999999999998 5667878888 89999999999999999999999999999976 899999
Q ss_pred HHhCCchHHHHHHHh-cCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhh--------cC--------CHHHH
Q 002091 458 MAKANYFKHLLQRLS-AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS--------RG--------DIQMK 520 (968)
Q Consensus 458 i~~~g~v~~Lv~~L~-~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--------~~--------~~~~~ 520 (968)
+++.|++++|+++|+ ++++++++.|+++|++|+..+++|..+++ |++|+|+++|. ++ ++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999999 88999999999999999988999999999 99999999993 22 45667
Q ss_pred HHHHHHHHHhcCCCccHHHHHHc-CChHHHHHHhccc---CCCCcchHHHHHHHHHHhhcCcc-----c-----------
Q 002091 521 KVAVKALRNLSSVPQNGLQMIKE-GAVGPLVDLLLHH---SSSSSSLREETATAIMHLAVSTM-----Y----------- 580 (968)
Q Consensus 521 ~~a~~aL~~Ls~~~~~~~~i~~~-g~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~~~-----~----------- 580 (968)
+.|+++|+||+.+++++..+++. |++++|+.+|.+. ......++++++++|.||+.... .
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999888899999998 9999999999852 11125689999999999973110 0
Q ss_pred ----------------------------ccCCCCccccccchhHHHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCh--h
Q 002091 581 ----------------------------QESSQTPVTLLESDKEIFMLFSLINL-TGPNVQQRILQTFNALCRSPSA--G 629 (968)
Q Consensus 581 ----------------------------~~~~~~~~~il~~~~~i~~l~~ll~~-~~~~~~~~al~~L~~L~~~~~~--~ 629 (968)
....+.+...+...++++.++.++.. .++.+++.++|+|.++|.+... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 00012344567788899999999974 5799999999999999976433 2
Q ss_pred hH-HHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCC-----HHHHHHH
Q 002091 630 NI-KTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHN-----EEEIASA 703 (968)
Q Consensus 630 ~~-~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-----~~~~~~A 703 (968)
.+ +..+.+.|+++.|++++.+++.+++..|+++|.||+. + + .....+..++++.|+++|...+. .++...+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~-~-~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-H-P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-S-G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc-C-H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 34 5567778999999999999999999999999999983 2 2 33455567899999999988632 4688899
Q ss_pred HHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCC
Q 002091 704 MGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP 760 (968)
Q Consensus 704 l~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~ 760 (968)
+++|+|+.. +++.+..+.+.|+++.|+.++.++ .+..+++.|+++|.++...
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~-----~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-----ASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC-----CcHHHHHHHHHHHHHHHcc
Confidence 999999988 888999999999999999999993 1678999999999999974
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.7e-31 Score=316.23 Aligned_cols=403 Identities=17% Similarity=0.214 Sum_probs=340.5
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCC--ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccc
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP--QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 580 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 580 (968)
..++.+++.+.+++++.+..|+..+++|.+.. +....+++.|+||.|+++|...+ .+.++..|+++|+||+.....
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~--~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD--CSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT--CHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHcCCHH
Confidence 46889999999999999999999999986533 44688999999999999997543 378999999999999986543
Q ss_pred ccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCC-----hhH
Q 002091 581 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN-----ENV 655 (968)
Q Consensus 581 ~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~-----~~v 655 (968)
.. ..+...|+++.|+.++.+.++.+++.++|+|.+|+.. +.+.+..+.+.|+++.|+.++..++ ..+
T Consensus 154 ~~------~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~--~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~ 225 (529)
T 3tpo_A 154 QT------KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA--GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 225 (529)
T ss_dssp HH------HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHH
T ss_pred HH------HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHH
Confidence 33 2567789999999999999999999999999999864 5677889999999999999998654 356
Q ss_pred HHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhh
Q 002091 656 RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK 734 (968)
Q Consensus 656 ~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~ 734 (968)
...++++|.+++....+ ........++++.|+.+|.+ .+.+++..|+++|.+|+. +.+....+.+.|+++.|+.+|.
T Consensus 226 ~~~a~~~L~nl~~~~~~-~~~~~~~~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNP-APPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHHHHHHHCCCTT-CCCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccc-hhhHHHHhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 88999999999843322 21222235789999999987 577899999999999999 8888888999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 002091 735 NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKR 814 (968)
Q Consensus 735 ~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~ 814 (968)
+ .+..++..++.+|+|++.+ ++.....+.+.|+++.|+.+|.++++.++..|+|+|+|++.+
T Consensus 304 ~------~~~~v~~~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~----------- 365 (529)
T 3tpo_A 304 A------TELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----------- 365 (529)
T ss_dssp C------SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS-----------
T ss_pred C------CChhHHHHHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-----------
Confidence 8 6788999999999999987 888889999999999999999999999999999999999832
Q ss_pred CcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcH
Q 002091 815 KGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAI 893 (968)
Q Consensus 815 ~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i 893 (968)
+..+...+++.|++++|+.+|.+++..++..|++||.|++ .+. .+....+.+.|++
T Consensus 366 ---------------------~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~--~~~~~~l~~~g~i 422 (529)
T 3tpo_A 366 ---------------------RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT--VEQIVYLVHCGII 422 (529)
T ss_dssp ---------------------CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCH
T ss_pred ---------------------cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCcCH
Confidence 3456677889999999999999999999999999999999 332 2556788999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcChh-------hHHHhccc-CCchhhhhcccCCchhhHHHHHHHHHH
Q 002091 894 DRMVRFLSSPSPKLQEKALDSVERIFRLPE-------FKQKYGKS-AQMPLVDLTQRGNSSMKSLSARVLAHL 958 (968)
Q Consensus 894 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~-~~~~Lv~ll~~~~~~~~~~A~~aL~~L 958 (968)
++|+++|.+.++.+...++++|.+|+...+ +...+... +...|..+..+.+.+++++|..+|..-
T Consensus 423 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 423 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999975321 23333333 355677777889999999999999764
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=308.78 Aligned_cols=367 Identities=21% Similarity=0.241 Sum_probs=292.5
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhc------------CCHHHHHHHHHHHHH
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSA------------GPESVKMRMATTLAE 488 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~------------~~~~~~~~aa~~L~~ 488 (968)
..++.|+..+.+.|.. ...+.|..++.+++-+..+++.|++|.|+++|+. ++++.+..|+++|.+
T Consensus 32 ~~~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~n 108 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108 (458)
T ss_dssp -------------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHH
Confidence 3467788888777666 3677888899888888999999999999999986 347999999999999
Q ss_pred hcc-CchhhHHHhhcCch----------HHHHHhhhcCC--HH-----HHH-------HHHHHHHHhcCCCccHHHHHHc
Q 002091 489 MEL-TDHHKASLLEGNVL----------GPLLHLVSRGD--IQ-----MKK-------VAVKALRNLSSVPQNGLQMIKE 543 (968)
Q Consensus 489 L~~-~~~~~~~i~~~g~i----------~~Lv~lL~~~~--~~-----~~~-------~a~~aL~~Ls~~~~~~~~i~~~ 543 (968)
++. .++......+.|++ +.+++++.+.. .+ +++ .|+++|.|++.++++|..+++.
T Consensus 109 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~ 188 (458)
T 3nmz_A 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL 188 (458)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 954 44444444556666 66777776542 22 444 9999999999999999999999
Q ss_pred CChHHHHHHhccc--------CCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHH
Q 002091 544 GAVGPLVDLLLHH--------SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRI 615 (968)
Q Consensus 544 g~v~~Lv~lL~~~--------~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~a 615 (968)
|++++|+.+|... +...+.++.+|+++|.||+........ .+....|+++.|+.++.+.++++++.+
T Consensus 189 G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~-----~i~~~~GaIp~LV~LL~s~~~~v~~~A 263 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA-----TLCSMKGCMRALVAQLKSESEDLQQVI 263 (458)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHH-----HHHHCHHHHHHHHHGGGCSCHHHHHHH
T ss_pred CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHH-----HHHHcCCcHHHHHHHHhCCCHHHHHHH
Confidence 9999999999521 101256899999999999986542221 133457789999999999999999999
Q ss_pred HHHHHHhccCCChhhHHHHHhhcCchHHHHHhh-ccCChhHHHHHHHHHHHhccCCChhHHHHhh-ccccHHHHHHHhcc
Q 002091 616 LQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLC-EHDNENVRANAVKLFCCLVDDGDEAIIREHV-GQKCLETLVTIIQS 693 (968)
Q Consensus 616 l~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~ 693 (968)
+++|.+|+.. .+...+..+.+.|+++.|++++ ++++..+++.|+.+|+||+ .+.++....+. ..|+++.|+.+|.+
T Consensus 264 ~~aL~nLs~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs-~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 264 ASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS-AHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHH-HHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHc-cCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 9999999864 2456778888999999999975 5678899999999999998 43344555665 78999999999987
Q ss_pred CCCH---HHHHHHHHHHhcCC----CCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHH
Q 002091 694 SHNE---EEIASAMGILSKLP----EVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ 766 (968)
Q Consensus 694 ~~~~---~~~~~Al~~L~nL~----~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~ 766 (968)
..+. +++..|+++|.||+ .+++.++.+.+.|+++.|+.+|.+ .+..++++|+++|+|++.+ +++.+
T Consensus 342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~------~~~~v~~~A~~aL~nLa~~-~~~~~ 414 (458)
T 3nmz_A 342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS------HSLTIVSNACGTLWNLSAR-NPKDQ 414 (458)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC------SCHHHHHHHHHHHHHHHSS-CHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC------CChHHHHHHHHHHHHHHcC-CHHHH
Confidence 6543 58999999999998 388999999999999999999998 5677999999999999976 89999
Q ss_pred HHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccC
Q 002091 767 KRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 767 ~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s 804 (968)
+.+.+.|++|.|+.+|.++++.+++.|+++|.||+.++
T Consensus 415 ~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999654
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=304.75 Aligned_cols=365 Identities=17% Similarity=0.177 Sum_probs=294.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhc------------CCHHHHHHHHHHHHHhc
Q 002091 464 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR------------GDIQMKKVAVKALRNLS 531 (968)
Q Consensus 464 v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~------------~~~~~~~~a~~aL~~Ls 531 (968)
++.|+..+.+.+.. .....|..++.+++.|..+++.|++|.||++|+. ++++++..|+++|.||+
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 56677777666544 3778899999999999999999999999999986 33799999999999999
Q ss_pred C-CCccHHHHHHcCCh----------HHHHHHhcccC--CCCc--chHH-------HHHHHHHHhhcCcccccCCCCccc
Q 002091 532 S-VPQNGLQMIKEGAV----------GPLVDLLLHHS--SSSS--SLRE-------ETATAIMHLAVSTMYQESSQTPVT 589 (968)
Q Consensus 532 ~-~~~~~~~i~~~g~v----------~~Lv~lL~~~~--~~~~--~~~~-------~a~~~L~~La~~~~~~~~~~~~~~ 589 (968)
. .++......+.|++ +.+++++.... .+.. .+++ +|+++|.||+.+++.|..
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~------ 184 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA------ 184 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH------
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH------
Confidence 6 66667777777777 66677776542 1100 1444 999999999988777764
Q ss_pred cccchhHHHHHHHhhcc-----------CCHHHHHHHHHHHHHhccCCChhhHHHHHh-hcCchHHHHHhhccCChhHHH
Q 002091 590 LLESDKEIFMLFSLINL-----------TGPNVQQRILQTFNALCRSPSAGNIKTTLT-QCSAIPVLVQLCEHDNENVRA 657 (968)
Q Consensus 590 il~~~~~i~~l~~ll~~-----------~~~~~~~~al~~L~~L~~~~~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~v~~ 657 (968)
+...|+++.|+.++.. .++.++.+++|+|.+||... ...+..+. ..|+++.|+.+|.+++++++.
T Consensus 185 -i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~--~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 185 -MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp -HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred -HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC--cccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 6678999999999842 34678999999999999753 33455554 456699999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHH-HcCCHHHHHHHhhc
Q 002091 658 NAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLL-DAGALPIVLNFLKN 735 (968)
Q Consensus 658 ~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~-~~g~l~~Lv~lL~~ 735 (968)
.|+++|++|+...+++.+..+.+.|+++.|+++|....+.+++..|+++|+||+. +++.+..+. ..|+++.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 9999999998333567788888999999999987665678899999999999999 888877777 79999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHhhccC---CCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCC
Q 002091 736 GRQNDPNRFQVVENAVGALRRFTA---PTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 812 (968)
Q Consensus 736 ~~~~~~~~~~v~e~a~~aL~~L~~---~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~ 812 (968)
++.. ....+++.|+++|+|++. . +++.++.+.+.|++|.|+.+|.+++..+++.|+|+|+|++..
T Consensus 342 ~~~~--~~~~v~~~A~~aL~nLs~~~a~-~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~--------- 409 (458)
T 3nmz_A 342 RSQT--NTLAIIESGGGILRNVSSLIAT-NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR--------- 409 (458)
T ss_dssp CCSS--STTHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS---------
T ss_pred CCCc--chHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC---------
Confidence 4321 112589999999999996 4 789999999999999999999999999999999999999831
Q ss_pred CCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 813 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 813 ~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
++++...+++.|++++|+++|.++++.+++.|++||.||+
T Consensus 410 -----------------------~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 410 -----------------------NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp -----------------------CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.98 E-value=4.9e-30 Score=304.65 Aligned_cols=408 Identities=17% Similarity=0.204 Sum_probs=340.8
Q ss_pred hCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC--chhhHHHhhcCchHHHHHhhhcC-CHHHHHHHHHHHHHhcC-CCc
Q 002091 460 KANYFKHLLQRLSAGPESVKMRMATTLAEMELT--DHHKASLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS-VPQ 535 (968)
Q Consensus 460 ~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~-~~~ 535 (968)
..+.++.|+..|++++++.+..|+..|.++... +.....+.+.|+++.|+++|+++ ++.++..|+++|.+++. .++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 346799999999999999999999999999543 34556678899999999999987 89999999999999997 456
Q ss_pred cHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHH
Q 002091 536 NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRI 615 (968)
Q Consensus 536 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~a 615 (968)
++..+++.|+++.|+.+|.+++ +.+++.|+++|++|+..
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~---~~vr~~A~~aL~~l~~~-------------------------------------- 203 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGS---VEVKEQAIWALGNVAGD-------------------------------------- 203 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCC---HHHHHHHHHHHHHHHTT--------------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhCC--------------------------------------
Confidence 7888889999999999998754 77888888888888752
Q ss_pred HHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCC
Q 002091 616 LQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH 695 (968)
Q Consensus 616 l~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 695 (968)
+...+..+...|+++.|+.++.+.+..++..|+++|.+|+....+ ........++++.|+.+|.+ .
T Consensus 204 ------------~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~lL~~-~ 269 (530)
T 1wa5_B 204 ------------STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP-QPDWSVVSQALPTLAKLIYS-M 269 (530)
T ss_dssp ------------CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS-CCCHHHHGGGHHHHHHHTTC-C
T ss_pred ------------CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC-CCcHHHHHhHHHHHHHHHcC-C
Confidence 123344555678999999999998999999999999999843212 22233456899999999987 4
Q ss_pred CHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCC
Q 002091 696 NEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGV 774 (968)
Q Consensus 696 ~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~ 774 (968)
+.+++..|+++|++|+. .++....+.+.|+++.|+.+|.+ .+..++..|+++|++++.+ ++...+.+.+.|+
T Consensus 270 d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~------~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~ 342 (530)
T 1wa5_B 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH------ESTLVQTPALRAVGNIVTG-NDLQTQVVINAGV 342 (530)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC------CChhhHHHHHHHHHHHHcC-CHHHHHHHHHcch
Confidence 67899999999999998 78888889999999999999998 5688999999999999987 7888888899999
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHh
Q 002091 775 IPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVR 854 (968)
Q Consensus 775 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~ 854 (968)
+|.|+.+|.++++.++..|+|+|++++.. +.++...+++.|+++.|+.
T Consensus 343 l~~L~~lL~~~~~~vr~~A~~aL~~l~~~--------------------------------~~~~~~~~~~~~~l~~L~~ 390 (530)
T 1wa5_B 343 LPALRLLLSSPKENIKKEACWTISNITAG--------------------------------NTEQIQAVIDANLIPPLVK 390 (530)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTS--------------------------------CHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC--------------------------------CHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999831 2345566788999999999
Q ss_pred hccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhh---------
Q 002091 855 VLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEF--------- 924 (968)
Q Consensus 855 lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------- 924 (968)
+|.++++.++..|+++|.+++ .+....+....+.+.|+++.|+.++.++++.++..++++|.+++...+.
T Consensus 391 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 470 (530)
T 1wa5_B 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNI 470 (530)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 999999999999999999999 4321114566778999999999999999999999999999999865432
Q ss_pred ---HHHhccc-CCchhhhhcccCCchhhHHHHHHHHHHhhc
Q 002091 925 ---KQKYGKS-AQMPLVDLTQRGNSSMKSLSARVLAHLNVL 961 (968)
Q Consensus 925 ---~~~~~~~-~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~ 961 (968)
...+... +...|..+..+.++++++.|..+|.++-..
T Consensus 471 ~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred cHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 2233333 356788899999999999999999987543
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.98 E-value=7.1e-30 Score=303.22 Aligned_cols=415 Identities=16% Similarity=0.149 Sum_probs=346.9
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-Ch-hHHHHhhhccChHHHHHHhhcCCC-HHHHHHHHHHHHhccCC-ch
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELST-CN-TLRDQIGDVQGCILLLVTMASSDD-NQASRDAQELLENLSFS-DD 453 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~-~~~~~i~~~~g~i~~Lv~lL~s~~-~~~~~~a~~~L~~Ls~~-~~ 453 (968)
...++.++..|.+ +++.+..|+..|..+.. .. .....+.. .|++|.|+.+|.+++ +.++..|+.+|.+++.. ++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ-SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH-TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3457788888854 56788999999998855 32 55666777 799999999999876 99999999999999965 67
Q ss_pred hHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhh-hcCCHHHHHHHHHHHHHhc
Q 002091 454 NVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLV-SRGDIQMKKVAVKALRNLS 531 (968)
Q Consensus 454 n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls 531 (968)
++..+++.|+++.|+.+|.++++.++..|+++|.+++.+ +..+..+.+.|++++|+.+| .+.++.++..|+++|.+|+
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999765 56788888899999999999 6678999999999999999
Q ss_pred CCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHH
Q 002091 532 SVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNV 611 (968)
Q Consensus 532 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~ 611 (968)
....+.......|+++.|+.+|.+.+ +.++..++++|.+|+...
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~aL~~l~~~~--------------------------------- 275 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSND---EEVLTDACWALSYLSDGT--------------------------------- 275 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCC---HHHHHHHHHHHHHHTSSC---------------------------------
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCC---------------------------------
Confidence 86555555566899999999997654 677777777777777432
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHh
Q 002091 612 QQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTII 691 (968)
Q Consensus 612 ~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL 691 (968)
......+.+.|+++.|+.++.++++.++..|+++|.+|+ .+.+.....++..|+++.|+.+|
T Consensus 276 -----------------~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 276 -----------------NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV-TGDDAQTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp -----------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHTTTHHHHHHHHH
T ss_pred -----------------HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH-cCCHHHHHHHHHhhhHHHHHHHH
Confidence 111234455689999999999999999999999999999 66777778888899999999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHH
Q 002091 692 QSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA 770 (968)
Q Consensus 692 ~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~ 770 (968)
.+..+..++..|+++|+||+. ++.....+++.|+++.|+.+|.+ .+..+++.|+++|.+++..++++....+.
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 411 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT------AEFDIKKEAAWAISNATSGGSHDQIKYLV 411 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc------CCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 986578999999999999998 88888999999999999999998 56789999999999999875688888999
Q ss_pred HcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChH
Q 002091 771 EAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVR 850 (968)
Q Consensus 771 ~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~ 850 (968)
+.|+++.|+.+|.++++.++..+.++|.++.......... .+ .-.......+.+.|+++
T Consensus 412 ~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~----~~-----------------~~~~~~~~~i~~~~~~~ 470 (528)
T 4b8j_A 412 SEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTL----AA-----------------GDVNVFSQMIDEAEGLE 470 (528)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHH----HT-----------------CSCCHHHHHHHHTTHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhc----cc-----------------ccccHHHHHHHHCCcHH
Confidence 9999999999999999999999999999997422100000 00 00112344567889999
Q ss_pred HHHhhccCCChhhhHHHHHHHHhhh
Q 002091 851 PLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 851 ~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
.+..+..+.++.+++.|..+|.++.
T Consensus 471 ~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 471 KIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999988
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=1.6e-28 Score=285.26 Aligned_cols=411 Identities=18% Similarity=0.197 Sum_probs=334.9
Q ss_pred hHHHHHHhhcc-ChHHHHHHHHHHHHhcc---ChhHHHHhhhccChHHHHHHhhcCC-CHHHHHHHHHHHHhccCC-chh
Q 002091 381 AVESIVRSLGR-RIEERKLAVALLLELST---CNTLRDQIGDVQGCILLLVTMASSD-DNQASRDAQELLENLSFS-DDN 454 (968)
Q Consensus 381 ~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~---~~~~~~~i~~~~g~i~~Lv~lL~s~-~~~~~~~a~~~L~~Ls~~-~~n 454 (968)
.++.+++.+.+ +++.+..|+..|+.+.. ++..+..+.. .|.+|.|+.+|+++ ++.++..|+.+|.+++.. +++
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~-~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST-PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTS-TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 36677777744 56788999999998642 4444444433 49999999999987 899999999999999864 566
Q ss_pred HHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc-hhhHHHhhcCchHHHHHhhhc-CCHHHHHHHHHHHHHhcC
Q 002091 455 VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLHLVSR-GDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 455 ~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~ 532 (968)
...+++.|+++.|+.+|+++++.++..|+++|.+++... +.+..+.+.|+++.|+.++++ .++.++..|+++|.+|+.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 777888999999999999999999999999999997764 677788889999999999996 689999999999999996
Q ss_pred C--CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHH
Q 002091 533 V--PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPN 610 (968)
Q Consensus 533 ~--~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~ 610 (968)
. +..+..++ .|+++.|++++.+.+ +.++..++++|.+|+...
T Consensus 180 ~~~~~~~~~~~-~~~l~~L~~~l~~~~---~~v~~~a~~~L~~l~~~~-------------------------------- 223 (450)
T 2jdq_A 180 GKSPPPEFAKV-SPCLNVLSWLLFVSD---TDVLADACWALSYLSDGP-------------------------------- 223 (450)
T ss_dssp CSSSCCCGGGT-GGGHHHHHHHTTCCC---HHHHHHHHHHHHHHTSSS--------------------------------
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHccCC---HHHHHHHHHHHHHHHCCC--------------------------------
Confidence 4 33333333 788999999997654 667777777777776421
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHH
Q 002091 611 VQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTI 690 (968)
Q Consensus 611 ~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~l 690 (968)
.+....+...|+++.|+.++.+++..++..|+++|.+++ .+.+.....+++.|+++.|+.+
T Consensus 224 ------------------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~l~~L~~l 284 (450)
T 2jdq_A 224 ------------------NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV-TGDDIQTQVILNCSALQSLLHL 284 (450)
T ss_dssp ------------------HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHTTTHHHHHHHH
T ss_pred ------------------cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHh-hCChHHHHHHHHCccHHHHHHH
Confidence 112234445689999999999999999999999999999 6666666677888999999999
Q ss_pred hccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091 691 IQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 769 (968)
Q Consensus 691 L~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~ 769 (968)
|.+ .+..++..|+++|++++. ++...+.+.+.|+++.|+.+|.+ .+..++..++++|++++...+++..+.+
T Consensus 285 l~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~l 357 (450)
T 2jdq_A 285 LSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT------AEFRTRKEAAWAITNATSGGSAEQIKYL 357 (450)
T ss_dssp TTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc------CCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 988 477899999999999998 88888889999999999999998 5678999999999999975467777788
Q ss_pred HHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCCh
Q 002091 770 AEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAV 849 (968)
Q Consensus 770 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i 849 (968)
.+.|++|.|+.++.++++.++..|+++|.++....+.... .+..+.......+.+.|++
T Consensus 358 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~---------------------~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 358 VELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK---------------------RNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHH---------------------HSCSCCCHHHHHHHHHHCH
T ss_pred HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh---------------------ccccchhHHHHHHHHcCcH
Confidence 8999999999999999999999999999999853211000 0000011234556788999
Q ss_pred HHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 850 RPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 850 ~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
+.|..++.+++..+++.|..+|.++.
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999998
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=2.9e-26 Score=253.78 Aligned_cols=269 Identities=21% Similarity=0.232 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhc-----------CCHHHHHHHHHHHHHhcCCC-ccHHHHHHc-
Q 002091 477 SVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR-----------GDIQMKKVAVKALRNLSSVP-QNGLQMIKE- 543 (968)
Q Consensus 477 ~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~- 543 (968)
..+..|+++|.+++.++++|..+.+.|++++|+.+|.. .++.++..|+++|.||+... +++..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 45568999999999999999999999999999999953 24689999999999999755 477777654
Q ss_pred CChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhc
Q 002091 544 GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALC 623 (968)
Q Consensus 544 g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~ 623 (968)
|+||.|+++|.+++ +++++.|+++|.||+..
T Consensus 127 GaIp~LV~LL~s~~---~~v~~~A~~aL~nLs~~---------------------------------------------- 157 (354)
T 3nmw_A 127 GCMRALVAQLKSES---EDLQQVIASVLRNLSWR---------------------------------------------- 157 (354)
T ss_dssp HHHHHHHHGGGCSC---HHHHHHHHHHHHHHHTT----------------------------------------------
T ss_pred CcHHHHHHHHCCCC---HHHHHHHHHHHHHHhcc----------------------------------------------
Confidence 56999999998655 67888888888888742
Q ss_pred cCCChhhHHHHHhhcCchHHHHHhh-ccCChhHHHHHHHHHHHhccCCChhHHHHhh-ccccHHHHHHHhccCCCH---H
Q 002091 624 RSPSAGNIKTTLTQCSAIPVLVQLC-EHDNENVRANAVKLFCCLVDDGDEAIIREHV-GQKCLETLVTIIQSSHNE---E 698 (968)
Q Consensus 624 ~~~~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~---~ 698 (968)
.+.+.+..+.+.|+++.|++++ ++++..+++.|+.+|++|+ .+.++....+. ..|+++.|+++|.+.++. +
T Consensus 158 ---~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs-~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~ 233 (354)
T 3nmw_A 158 ---ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS-AHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233 (354)
T ss_dssp ---CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCH
T ss_pred ---CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH-ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHH
Confidence 1234566777889999999975 6678999999999999998 54445556665 789999999999876543 5
Q ss_pred HHHHHHHHHhcCCC----CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCC
Q 002091 699 EIASAMGILSKLPE----VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGV 774 (968)
Q Consensus 699 ~~~~Al~~L~nL~~----~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~ 774 (968)
++..|+++|.||+. +++.++.+.+.|+++.|+.+|++ .+..++++|+++|+|++.+ +++.++.+.+.|+
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS------HSLTIVSNACGTLWNLSAR-NPKDQEALWDMGA 306 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC------CChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCC
Confidence 89999999999984 88999999999999999999998 5678999999999999976 8999999999999
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHhhhcccCC
Q 002091 775 IPKLVQLLEYGTTLTKEHAATSLARFSKNSL 805 (968)
Q Consensus 775 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~ 805 (968)
+|.|+.+|.++++.+++.|+++|.||+.+.+
T Consensus 307 i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999996543
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=1.6e-25 Score=247.80 Aligned_cols=266 Identities=18% Similarity=0.213 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcC-----------CCHHHHHHHHHHHHhccCCch-hHHHHHh-
Q 002091 394 EERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS-----------DDNQASRDAQELLENLSFSDD-NVVQMAK- 460 (968)
Q Consensus 394 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-----------~~~~~~~~a~~~L~~Ls~~~~-n~~~i~~- 460 (968)
..+..|+..|.+++.++++|..|.+ .|+++.|+.+|.+ .++.++.+|+.+|.||+.+++ ++..+..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3566899999999999999999999 8999999999952 246789999999999997654 7888765
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHHhccC--chhhHHHhhcCchHHHHHhh-hcCCHHHHHHHHHHHHHhcC-CCcc
Q 002091 461 ANYFKHLLQRLSAGPESVKMRMATTLAEMELT--DHHKASLLEGNVLGPLLHLV-SRGDIQMKKVAVKALRNLSS-VPQN 536 (968)
Q Consensus 461 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls~-~~~~ 536 (968)
.|++++|+.+|+++++++++.|+++|.+|+.. +++|..+.+.|+|++|+++| +++++.+++.|+.+|+||+. ++++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 45699999999999999999999999999874 57899999999999999975 66789999999999999998 6688
Q ss_pred HHHHH-HcCChHHHHHHhcccCCC-CcchHHHHHHHHHHhhc----CcccccCCCCccccccchhHHHHHHHhhccCCHH
Q 002091 537 GLQMI-KEGAVGPLVDLLLHHSSS-SSSLREETATAIMHLAV----STMYQESSQTPVTLLESDKEIFMLFSLINLTGPN 610 (968)
Q Consensus 537 ~~~i~-~~g~v~~Lv~lL~~~~~~-~~~~~~~a~~~L~~La~----~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~ 610 (968)
+..++ ..|+++.|+++|.+.+.. ..++++.|+++|.||+. .+..+. .+...|+++.|+.++.+++..
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~-------~i~~~g~i~~Lv~lL~~~~~~ 278 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ-------ILRENNCLQTLLQHLKSHSLT 278 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH-------HHHTTTHHHHHHHHTTCSCHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH-------HHHHcCCHHHHHHHHcCCChH
Confidence 88888 689999999999865421 11489999999999996 444433 566788999999999999999
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccC
Q 002091 611 VQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDD 669 (968)
Q Consensus 611 ~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~ 669 (968)
+++.++++|.+++.. +.+.+..+.+.|+++.|+.+++++++.+++.|+++|.+|+..
T Consensus 279 v~~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 279 IVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999853 456677888999999999999999999999999999999944
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-22 Score=237.88 Aligned_cols=432 Identities=14% Similarity=0.142 Sum_probs=328.2
Q ss_pred HHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcC-CCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHH
Q 002091 394 EERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASS-DDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRL 471 (968)
Q Consensus 394 ~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s-~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L 471 (968)
+....++..+..+-- .|+.+..+.-..|..+.+...+.+ .+.......+..|...|.+...|..+ ..++++.|...+
T Consensus 227 ~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l 305 (778)
T 3opb_A 227 DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSL 305 (778)
T ss_dssp CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHh
Confidence 344555666655433 677777666557999999988854 45555566666666667777777777 456778888888
Q ss_pred hcCCHHHHHHHHHHHHHhccCchh-hHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHc-CChHHH
Q 002091 472 SAGPESVKMRMATTLAEMELTDHH-KASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE-GAVGPL 549 (968)
Q Consensus 472 ~~~~~~~~~~aa~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g~v~~L 549 (968)
+. ..+|..|+.+|..|...... ...+ ....+.++++|.+++.+.++.|+..|..|+.+++.|..+++. |+++.|
T Consensus 306 ~~--~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~L 381 (778)
T 3opb_A 306 NV--EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEIL 381 (778)
T ss_dssp TS--GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHH
T ss_pred cc--HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHH
Confidence 65 57888999999998543321 1112 236677888888877777999999999999999999999876 669999
Q ss_pred HHHhcccCCCCcchHHHHHHHHHHhhcCcccccC---------------CC------C-----------ccccccchhHH
Q 002091 550 VDLLLHHSSSSSSLREETATAIMHLAVSTMYQES---------------SQ------T-----------PVTLLESDKEI 597 (968)
Q Consensus 550 v~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~---------------~~------~-----------~~~il~~~~~i 597 (968)
++++.... ...+...++.+|.||+.+.+.... .| . ....+...|++
T Consensus 382 v~llk~~~--d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvI 459 (778)
T 3opb_A 382 LTMIKSQK--MTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELI 459 (778)
T ss_dssp HHHHTTTC--CTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHhCCC--CchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCH
Confidence 99998522 267899999999999985442111 00 0 22456677999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChh---HHHHHHHHHHHhccCCChhH
Q 002091 598 FMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNEN---VRANAVKLFCCLVDDGDEAI 674 (968)
Q Consensus 598 ~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~---v~~~a~~~L~~Ls~~~~~~~ 674 (968)
+.|+.++++.++.+++.++++|.+|+.. .+.|..+.+.|+++.|+.++.+++.. ++..|+.+|.+|....++..
T Consensus 460 p~Lv~Ll~S~s~~~re~A~~aL~nLS~d---~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 460 SFLKREMHNLSPNCKQQVVRIIYNITRS---KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHTS---GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999854 56677888899999999999888654 89999999999984444433
Q ss_pred HHHh-hccccHHHHHHHhcc-CCC------------HHHHHHHHHHHhcCCC-C----HHhHHHHHHc-CCHHHHHHHhh
Q 002091 675 IREH-VGQKCLETLVTIIQS-SHN------------EEEIASAMGILSKLPE-V----PQFTQWLLDA-GALPIVLNFLK 734 (968)
Q Consensus 675 ~~~~-~~~~~i~~Lv~lL~~-~~~------------~~~~~~Al~~L~nL~~-~----~~~~~~l~~~-g~l~~Lv~lL~ 734 (968)
.-.- ...++++.|+.+|.. ... .-.+..|+.+|.||+. + ++.++.++.. |+++.|.++|.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 2110 113899999999983 111 1236789999999999 4 3567888885 99999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHhhccCCCCHHHH-HHHHH------cCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCC
Q 002091 735 NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ-KRAAE------AGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGL 807 (968)
Q Consensus 735 ~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~-~~~~~------~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l 807 (968)
+ .+..++..|+++++||+. +++.+ +.+.+ .+.++.|+.++.+++.++|++|+|+|+|++..
T Consensus 617 s------~n~~VrrAA~elI~NL~~--~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~---- 684 (778)
T 3opb_A 617 D------ENVPLQRSTLELISNMMS--HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT---- 684 (778)
T ss_dssp C------SSHHHHHHHHHHHHHHHT--SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH----
T ss_pred C------CCHHHHHHHHHHHHHHhC--CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC----
Confidence 8 567899999999999998 45542 23322 22488999999999999999999999999621
Q ss_pred CCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhc-CChHHHHhhccC--CChhhhHHHHHHHHhhh
Q 002091 808 SRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEA-NAVRPLVRVLED--PDHGACEASLDALVTLI 875 (968)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~-g~i~~Lv~lL~~--~~~~v~~~al~aL~~L~ 875 (968)
++.....+++. ++++.|+.+|.+ ++++++++++.++.|++
T Consensus 685 ----------------------------~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 685 ----------------------------IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp ----------------------------CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ----------------------------ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 22345667776 899999999998 89999999999999999
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-22 Score=235.88 Aligned_cols=397 Identities=12% Similarity=0.102 Sum_probs=305.9
Q ss_pred chhHHHHHHhhcc-ChH-HHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchh-H
Q 002091 379 DDAVESIVRSLGR-RIE-ERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDN-V 455 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~-~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n-~ 455 (968)
.|.++.+.+.+.+ ... .....+..|...|-+...|..|.+ +++++|..++++ ..++..|+..|..+...+.. .
T Consensus 254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~--~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~ 329 (778)
T 3opb_A 254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITE--NYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC 329 (778)
T ss_dssp TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHH--HHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT
T ss_pred ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHH--hHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc
Confidence 6777777777633 223 334445555555558888888854 889999999976 46788888889888643321 1
Q ss_pred HHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhh-cCchHHHHHhhhc-CCHHHHHHHHHHHHHhcCC
Q 002091 456 VQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE-GNVLGPLLHLVSR-GDIQMKKVAVKALRNLSSV 533 (968)
Q Consensus 456 ~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~ 533 (968)
..+. ...+.+++.|..++.+.+..|+..|..++.+++.|..+++ .|+++.|++++++ ++..+...++.+|.||+.+
T Consensus 330 ~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 330 INLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp CCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred CcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 1111 1345566777776666699999999999999999999997 7789999999995 7788999999999999963
Q ss_pred Cc---------------------------------------cHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHh
Q 002091 534 PQ---------------------------------------NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL 574 (968)
Q Consensus 534 ~~---------------------------------------~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L 574 (968)
.+ ++..+.++|+++.|+.++.+.+ +.+++.++++|.||
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s---~~~re~A~~aL~nL 484 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLS---PNCKQQVVRIIYNI 484 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSC---HHHHHHHHHHHHHH
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCC---HHHHHHHHHHHHHH
Confidence 22 4566778999999999998865 88999999999999
Q ss_pred hcCcccccCCCCccccccchhHHHHHHHhhccCCHH---HHHHHHHHHHHhccCCChhhHHHHHh---hcCchHHHHHhh
Q 002091 575 AVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPN---VQQRILQTFNALCRSPSAGNIKTTLT---QCSAIPVLVQLC 648 (968)
Q Consensus 575 a~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~---~~~~al~~L~~L~~~~~~~~~~~~i~---~~g~i~~Lv~ll 648 (968)
+.....+.. +...|+++.|+.++...... .+..|+++|.++....++.. .+. ..|+++.|+.+|
T Consensus 485 S~d~~~R~~-------lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~---~f~~~~~~~aI~pLv~LL 554 (778)
T 3opb_A 485 TRSKNFIPQ-------LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL---IFKKYSALNAIPFLFELL 554 (778)
T ss_dssp HTSGGGHHH-------HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH---HSSSSCSTTHHHHHHHTS
T ss_pred cCCHHHHHH-------HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH---HcCCCccccchHHHHHHc
Confidence 988776664 56679999999999877654 89999999999985533322 221 137899999999
Q ss_pred cc-CC-h------------hHHHHHHHHHHHhccCCC---hhHHHHhhcc-ccHHHHHHHhccCCCHHHHHHHHHHHhcC
Q 002091 649 EH-DN-E------------NVRANAVKLFCCLVDDGD---EAIIREHVGQ-KCLETLVTIIQSSHNEEEIASAMGILSKL 710 (968)
Q Consensus 649 ~~-~~-~------------~v~~~a~~~L~~Ls~~~~---~~~~~~~~~~-~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL 710 (968)
.. ++ . --+..|+.+|.||+...+ ++.+..++.. |+++.|..+|.+ .+..++.+|+.++.||
T Consensus 555 ~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL 633 (778)
T 3opb_A 555 PRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTLELISNM 633 (778)
T ss_dssp CCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHH
T ss_pred CCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 83 21 1 127799999999995443 2345667774 899999999987 5678999999999999
Q ss_pred CCCHHhH-HHHHHc------CCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc-CChHHHHHHh
Q 002091 711 PEVPQFT-QWLLDA------GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA-GVIPKLVQLL 782 (968)
Q Consensus 711 ~~~~~~~-~~l~~~------g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~-g~i~~Lv~lL 782 (968)
+.+++.. +.+.+. +.++.|+.++.. .+..++..|+|+|.+++.. ++...+.+.+. ++++.++.++
T Consensus 634 ~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s------~D~~~r~AAagALAnLts~-~~~ia~~ll~~~~gi~~Ll~lL 706 (778)
T 3opb_A 634 MSHPLTIAAKFFNLENPQSLRNFNILVKLLQL------SDVESQRAVAAIFANIATT-IPLIAKELLTKKELIENAIQVF 706 (778)
T ss_dssp HTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC------SCHHHHHHHHHHHHHHHHH-CHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHhhcCchhhccHHHHHHHHcC------CCHHHHHHHHHHHHHhcCC-ChHHHHHHHHccccHHHHHHHH
Confidence 9966543 233222 247899999988 6789999999999999765 78777777776 8999999999
Q ss_pred hc--CChHHHHHHHHHHhhhcc
Q 002091 783 EY--GTTLTKEHAATSLARFSK 802 (968)
Q Consensus 783 ~~--~~~~v~~~Aa~aL~nl~~ 802 (968)
++ ++++++..++.++.|++.
T Consensus 707 ~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 707 ADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHT
T ss_pred hccCCCHHHHHHHHHHHHHHHH
Confidence 99 899999999999999995
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.88 E-value=2.4e-21 Score=205.73 Aligned_cols=241 Identities=22% Similarity=0.321 Sum_probs=215.2
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCC-ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccc
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP-QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 581 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 581 (968)
|.|+.|+++|++++++++..|+++|.+++... +++..+++.|+++.|+++|.+.+ +.++..++++|.+|+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~---- 74 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD---SEVQKEAARALANIASG---- 74 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTS----
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHcC----
Confidence 67899999999999999999999999999755 58999999999999999998765 67788888888887752
Q ss_pred cCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHH
Q 002091 582 ESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVK 661 (968)
Q Consensus 582 ~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~ 661 (968)
+.+.+..+.+.|+++.|+.++.++++.++..|++
T Consensus 75 ----------------------------------------------~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~ 108 (252)
T 4hxt_A 75 ----------------------------------------------PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 108 (252)
T ss_dssp ----------------------------------------------CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHH
T ss_pred ----------------------------------------------ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 2344556667789999999999999999999999
Q ss_pred HHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCC
Q 002091 662 LFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQND 740 (968)
Q Consensus 662 ~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~ 740 (968)
+|.+|+ ...++....+.+.|+++.|++++.+ .+.+++..++++|++|+. ++...+.+.+.|+++.|+.++.+
T Consensus 109 ~L~~l~-~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----- 181 (252)
T 4hxt_A 109 ALANIA-SGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----- 181 (252)
T ss_dssp HHHHHT-TSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-----
T ss_pred HHHHHH-cCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-----
Confidence 999998 5667778888889999999999997 467899999999999999 88888999999999999999998
Q ss_pred CchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCC
Q 002091 741 PNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSL 805 (968)
Q Consensus 741 ~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~ 805 (968)
.+..++..++++|++++.. ++..++.+.+.|+++.|+.++.++++.++..|+++|.|+....+
T Consensus 182 -~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 182 -TDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred -CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 5679999999999999986 88889999999999999999999999999999999999996553
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.88 E-value=1.5e-21 Score=207.21 Aligned_cols=239 Identities=18% Similarity=0.269 Sum_probs=215.8
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCc-hhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHH
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSD-DNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKAS 498 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~-~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~ 498 (968)
|.++.|+.+|.++++.++..|+.+|.+++..+ +++..+++.|+++.|+.+|++++++++..++++|.+++.. ++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999998655 5899999999999999999999999999999999999877 788889
Q ss_pred HhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhc-CCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcC
Q 002091 499 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLS-SVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 577 (968)
Q Consensus 499 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls-~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 577 (968)
+.+.|+++.|+.+|+++++.++..|+++|.+|+ ..++++..+.+.|+++.|+++|.+.+ +.++..++++|++|+..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD---SEVQKEAARALANIASG 158 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999 57788999999999999999999765 88999999999999975
Q ss_pred cccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHH
Q 002091 578 TMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRA 657 (968)
Q Consensus 578 ~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~ 657 (968)
..... ..+...|+++.++.++.+.++.++..++++|.+++.. +...+..+.+.|+++.|++++.++++.++.
T Consensus 159 ~~~~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 159 PDEAI------KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp CHHHH------HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGCSCHHHHH
T ss_pred CHHHH------HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCCCcHHHHH
Confidence 43332 2455678999999999999999999999999999863 556677788899999999999999999999
Q ss_pred HHHHHHHHhccCC
Q 002091 658 NAVKLFCCLVDDG 670 (968)
Q Consensus 658 ~a~~~L~~Ls~~~ 670 (968)
.|+++|.+|+...
T Consensus 231 ~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 231 EAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998433
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=3.7e-21 Score=204.64 Aligned_cols=237 Identities=20% Similarity=0.240 Sum_probs=212.3
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhc-cCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhhH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENL-SFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKA 497 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~L-s~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~-~~~~~~ 497 (968)
....+.++.+|.+++++++..|+.+|.++ +.+++++..+.+.|+++.|+.+|++++++++..|+++|.+++. +++++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34588999999999999999999999765 4567788899999999999999999999999999999999986 678889
Q ss_pred HHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccH-HHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhc
Q 002091 498 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNG-LQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 576 (968)
.+.+.|+++.|+.+|+++++.++..|+++|.||+..++++ ..+++.|+++.|+++|.+++ +.++..|+++|++|+.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN---EQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC---HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999988888 88999999999999998765 7899999999999997
Q ss_pred CcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHH
Q 002091 577 STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVR 656 (968)
Q Consensus 577 ~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~ 656 (968)
.+.... ..+...++++.++.++.+.++.++..++++|.+++.. +++.+..+.+.|+++.|+.++.++++.++
T Consensus 168 ~~~~~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 239 (252)
T 4db8_A 168 GGNEQI------QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQ 239 (252)
T ss_dssp SCHHHH------HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTTCSSSHHH
T ss_pred CChHHH------HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhCCCCHHHH
Confidence 543222 2455678999999999999999999999999999853 45566677888999999999999999999
Q ss_pred HHHHHHHHHhc
Q 002091 657 ANAVKLFCCLV 667 (968)
Q Consensus 657 ~~a~~~L~~Ls 667 (968)
..|+++|.+|+
T Consensus 240 ~~A~~~L~~l~ 250 (252)
T 4db8_A 240 KEAQEALEKLQ 250 (252)
T ss_dssp HTHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 99999999997
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=8.3e-21 Score=201.87 Aligned_cols=238 Identities=24% Similarity=0.331 Sum_probs=209.7
Q ss_pred cCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccc
Q 002091 502 GNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 580 (968)
Q Consensus 502 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 580 (968)
....+.++++|++++++++..|+++|.++.. .++++..+++.|+++.|+++|.+.+ +.++..|+++|.+|+..
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~--- 84 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN---EQILQEALWALSNIASG--- 84 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC---HHHHHHHHHHHHHHTTS---
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcC---
Confidence 3468999999999999999999999987664 6678889999999999999998765 67888888888887742
Q ss_pred ccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHH
Q 002091 581 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAV 660 (968)
Q Consensus 581 ~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~ 660 (968)
+.+.+..+.+.|+++.|+.++.++++.++..|+
T Consensus 85 -----------------------------------------------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~ 117 (252)
T 4db8_A 85 -----------------------------------------------GNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117 (252)
T ss_dssp -----------------------------------------------CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred -----------------------------------------------CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 233445666779999999999999999999999
Q ss_pred HHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCC
Q 002091 661 KLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQN 739 (968)
Q Consensus 661 ~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~ 739 (968)
++|.+|+ ...+.....+.+.|+++.|+.+|.+ .+..++..|+++|++|+. ++.....+.+.|+++.|+.+|.+
T Consensus 118 ~~L~~l~-~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---- 191 (252)
T 4db8_A 118 WALSNIA-SGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---- 191 (252)
T ss_dssp HHHHHHT-TSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC----
T ss_pred HHHHHhh-cCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC----
Confidence 9999998 4444444777888999999999987 477899999999999999 88888999999999999999998
Q ss_pred CCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 740 DPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 740 ~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
++..+++.++++|++++.. +++.++.+.+.|+++.|+.++.++++.++..|+++|.|++
T Consensus 192 --~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 192 --PNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp --SSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred --CCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 5788999999999999976 8888999999999999999999999999999999999997
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=188.90 Aligned_cols=196 Identities=20% Similarity=0.217 Sum_probs=171.4
Q ss_pred chhHHHHHHhhcc-Ch--HHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccC-Cch
Q 002091 379 DDAVESIVRSLGR-RI--EERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSF-SDD 453 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~--~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~-~~~ 453 (968)
.-.++.+++.|.+ ++ +.+..|+..|..++. ++.++..|.+ .|+||.||.+|++++..+++.|+.+|.||+. +++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 4568889999965 34 677889999999997 8889999999 7999999999999999999999999999996 578
Q ss_pred hHHHHHhCCchHHHHHHHh-cCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhh----------------cCC
Q 002091 454 NVVQMAKANYFKHLLQRLS-AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS----------------RGD 516 (968)
Q Consensus 454 n~~~i~~~g~v~~Lv~~L~-~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~----------------~~~ 516 (968)
||..+++.|++++|+++|+ .++.+++++|+.+|++|+..+++|..|.+. +|++|++++. ..+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 9999999999999999998 478999999999999999999999999874 6999998763 126
Q ss_pred HHHHHHHHHHHHHhcC-CCccHHHHHHc-CChHHHHHHhccc---CCCCcchHHHHHHHHHHhhc
Q 002091 517 IQMKKVAVKALRNLSS-VPQNGLQMIKE-GAVGPLVDLLLHH---SSSSSSLREETATAIMHLAV 576 (968)
Q Consensus 517 ~~~~~~a~~aL~~Ls~-~~~~~~~i~~~-g~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~ 576 (968)
++++.+|+.+|+||+. ++++|..|.+. |+|+.|+.+++.. ...+...+++|+.+|+||+.
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 6999999999999997 56899999987 6689999999863 11236789999999999985
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=188.57 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=170.3
Q ss_pred hHHHHHHhhcCCCH--HHHHHHHHHHHhcc-CCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhhH
Q 002091 422 CILLLVTMASSDDN--QASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKA 497 (968)
Q Consensus 422 ~i~~Lv~lL~s~~~--~~~~~a~~~L~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~-~~~~~~ 497 (968)
.+|.||.+|+++++ .++..|+..|.+++ .+++++..+++.|++++|+++|+++++++++.|+++|.+|+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999888 88999999999999 567899999999999999999999999999999999999987 578999
Q ss_pred HHhhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcc---cC----------CCCcch
Q 002091 498 SLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLH---HS----------SSSSSL 563 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~---~~----------~~~~~~ 563 (968)
.|.+.|+||+|+++|+ +++.++++.|+.+|+||+..+++|..+++. ++++|++++.. +. .....+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 479999999999999999999999999874 69999987641 11 113579
Q ss_pred HHHHHHHHHHhhcCc-ccccCCCCccccccchhHHHHHHHhhccC------CHHHHHHHHHHHHHhcc
Q 002091 564 REETATAIMHLAVST-MYQESSQTPVTLLESDKEIFMLFSLINLT------GPNVQQRILQTFNALCR 624 (968)
Q Consensus 564 ~~~a~~~L~~La~~~-~~~~~~~~~~~il~~~~~i~~l~~ll~~~------~~~~~~~al~~L~~L~~ 624 (968)
+++|+.+|.||+..+ +.|.. +...+|.|+.|+.+++.. +...+++++.+|.||+.
T Consensus 168 ~~na~~~L~nLss~~~~~R~~------~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKA------MRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHH------HHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCHHHHHH------HHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 999999999999854 55554 555678999999998742 55799999999999985
No 35
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.80 E-value=1.9e-20 Score=181.38 Aligned_cols=93 Identities=23% Similarity=0.340 Sum_probs=79.8
Q ss_pred hHHHHHHHHhhhhcCCCchhhhhhhhhhcccCCCCCCCCCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCC
Q 002091 224 QMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLC 303 (968)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~C 303 (968)
.++++..++.+++... ...++|++|+||||+++|+|||+++|||||||.||++|+..++.+|
T Consensus 83 ~i~~~~~l~~~~~~~~------------------~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tc 144 (179)
T 2f42_A 83 YLMDMDELFSQVDEKR------------------KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFD 144 (179)
T ss_dssp HHHHHHHHHHHHHHGG------------------GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHHHhhhc------------------cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCC
Confidence 5778888887654210 1234679999999999999999999999999999999998755589
Q ss_pred CCCCCcCCCCCCccCHhHHHHHHHHHhhccc
Q 002091 304 PLTMTVLDTSILRPNKTLRQSIEEWKDRNTM 334 (968)
Q Consensus 304 P~t~~~l~~~~l~pn~~l~~~I~~w~~~~~~ 334 (968)
|+|++++....++||..+|+.|+.|+..++.
T Consensus 145 P~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~ 175 (179)
T 2f42_A 145 PVTRSPLTQDQLIPNLAMKEVIDAFIQENGW 175 (179)
T ss_dssp TTTCCBCCGGGCEECHHHHHHHHHHHHHCTT
T ss_pred CCCcCCCChhhCcchHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999998874
No 36
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.80 E-value=2.8e-20 Score=164.30 Aligned_cols=74 Identities=26% Similarity=0.460 Sum_probs=69.1
Q ss_pred CCCCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhccc
Q 002091 260 LEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTM 334 (968)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~~ 334 (968)
..+|++|.||||+++|+|||+++|||||||.||++||. ++.+||+|++++....+.||..+++.|+.|+.+++.
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 34689999999999999999999999999999999997 578999999999999999999999999999988763
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.80 E-value=2.8e-20 Score=159.56 Aligned_cols=73 Identities=26% Similarity=0.494 Sum_probs=68.2
Q ss_pred CCCCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhcc
Q 002091 260 LEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (968)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 333 (968)
..+|++|.||||+++|+|||+++|||||||.||++|+.. +.+||+|++++....+.||..+|+.|+.|+.+++
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 346799999999999999999999999999999999974 6899999999999999999999999999998775
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.79 E-value=9e-20 Score=160.40 Aligned_cols=74 Identities=27% Similarity=0.491 Sum_probs=69.1
Q ss_pred CCCCCcccccccccCCCCceecCCc-hhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhccc
Q 002091 260 LEPLQSFYCPITRDVMVDPVETSSG-QTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTM 334 (968)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~~~~g-~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~~ 334 (968)
..+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||+|++++....++||..||+.|+.|+.+++.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence 3468999999999999999999999 99999999999975 67999999999999999999999999999998864
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.79 E-value=3.7e-18 Score=175.95 Aligned_cols=197 Identities=24% Similarity=0.325 Sum_probs=179.6
Q ss_pred cCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHh
Q 002091 638 CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQF 716 (968)
Q Consensus 638 ~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~ 716 (968)
.+..+.|+.++.++++.++..|+++|.+|+ .++++.+..+.+.|+++.|+++|.+. +.+++..|+++|+||+. ++..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIA-SGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 468999999999999999999999999998 66777888888999999999999984 77899999999999997 8999
Q ss_pred HHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHH
Q 002091 717 TQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 796 (968)
Q Consensus 717 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~a 796 (968)
+..+.+.|+++.|+.+|.+ .+..+++.|+++|+|++.. +++..+.+.+.|++|.|+.++.++++.++..|+++
T Consensus 89 ~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999998 5688999999999999987 78888889999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 797 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 797 L~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
|.|++.. +.+....+++.|+++.|+.++.++++.+++.|+++|.+|+
T Consensus 162 L~~l~~~--------------------------------~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 162 LSNIASG--------------------------------GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTS--------------------------------CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcC--------------------------------CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9999842 2345667889999999999999999999999999999986
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.78 E-value=6.6e-18 Score=173.99 Aligned_cols=198 Identities=23% Similarity=0.329 Sum_probs=179.8
Q ss_pred chhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCCh
Q 002091 593 SDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDE 672 (968)
Q Consensus 593 ~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~ 672 (968)
.++..+.+..++++.++.++..++++|.+++.. +.+.+..+.+.|+++.|+.++.++++.++..|+++|.+|+ .+.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~ 86 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGN 86 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCCc
Confidence 456788999999999999999999999999854 4556677888899999999999999999999999999998 6677
Q ss_pred hHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHH
Q 002091 673 AIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 751 (968)
Q Consensus 673 ~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~ 751 (968)
.....+++.|+++.|+.+|.+. +..++..|+++|+||+. +++..+.+.+.|+++.|+.++.+ .+..+++.++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~ 159 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEAL 159 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHH
Confidence 7788888999999999999885 67899999999999998 88888899999999999999998 5678999999
Q ss_pred HHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhc
Q 002091 752 GALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 752 ~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 801 (968)
++|++++.. +++.+..+.+.|+++.|+.++.++++.+++.|+++|.+++
T Consensus 160 ~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 160 WALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 999999996 7889999999999999999999999999999999999997
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.78 E-value=9.6e-17 Score=192.57 Aligned_cols=493 Identities=13% Similarity=0.081 Sum_probs=319.0
Q ss_pred hHHHHHHhhccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHh
Q 002091 381 AVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAK 460 (968)
Q Consensus 381 ~v~~lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~ 460 (968)
.++.+...+..+.+.+..++..|..+...-..... ....++.|..++.+++..++..|+.+|.+++..-.... ..
T Consensus 50 l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~---~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~--~~ 124 (588)
T 1b3u_A 50 LLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEY---VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD--LE 124 (588)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGG---GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--HH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHH---HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH--HH
Confidence 45555555544556788888888776542100011 13567788888888899999999999999975432211 12
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHH
Q 002091 461 ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQM 540 (968)
Q Consensus 461 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 540 (968)
...++.+..+..+.+...|..++.++..+...-... .....++.+..+++++++.+|..|+.+|..++...... .
T Consensus 125 ~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~ 199 (588)
T 1b3u_A 125 AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--N 199 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--H
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--h
Confidence 223455555666667889999999888885432211 12456788888899999999999999999998543322 2
Q ss_pred HHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002091 541 IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN 620 (968)
Q Consensus 541 ~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~ 620 (968)
.....++.+..++.+.+ ..++..|+.+|..++...... ......++.+..++++.++.++..++.+|.
T Consensus 200 ~~~~l~~~l~~~~~d~~---~~vr~~a~~~l~~l~~~~~~~---------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~ 267 (588)
T 1b3u_A 200 VKSEIIPMFSNLASDEQ---DSVRLLAVEACVNIAQLLPQE---------DLEALVMPTLRQAAEDKSWRVRYMVADKFT 267 (588)
T ss_dssp HHHTHHHHHHHHHTCSC---HHHHTTHHHHHHHHHHHSCHH---------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 23467888888887654 788999999999988632110 112346777888888889999999999999
Q ss_pred HhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHH
Q 002091 621 ALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEI 700 (968)
Q Consensus 621 ~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~ 700 (968)
.++....... . ....++.+..++.++++.++..|+.+|..++............-...++.+..++++ .+..++
T Consensus 268 ~l~~~~~~~~----~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d-~~~~vR 341 (588)
T 1b3u_A 268 ELQKAVGPEI----T-KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-ANQHVK 341 (588)
T ss_dssp HHHHHHCHHH----H-HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC-SCHHHH
T ss_pred HHHHHhCccc----c-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC-CCHHHH
Confidence 9875321111 1 134689999999999999999999999999843332211111223566777777766 567899
Q ss_pred HHHHHHHhcCCC--CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHH
Q 002091 701 ASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKL 778 (968)
Q Consensus 701 ~~Al~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~L 778 (968)
..++.+|+.++. ..+. .....++.+..++++ .+..+|..++.+|..+......+. ....++|.|
T Consensus 342 ~~a~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d------~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~lp~l 407 (588)
T 1b3u_A 342 SALASVIMGLSPILGKDN----TIEHLLPLFLAQLKD------ECPEVRLNIISNLDCVNEVIGIRQ----LSQSLLPAI 407 (588)
T ss_dssp HHHHTTGGGGHHHHCHHH----HHHHTHHHHHHHHTC------SCHHHHHHHHTTCHHHHHHSCHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhH----HHHHHHHHHHHHhCC------CchHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHH
Confidence 999999999876 3221 123467888899987 567899999988888775322221 123568889
Q ss_pred HHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccC
Q 002091 779 VQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLED 858 (968)
Q Consensus 779 v~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~ 858 (968)
..++.+.+..+|..++.+|..++..-+. + ......++.+..+|.+
T Consensus 408 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~-------------------------------~----~~~~~l~~~l~~~l~d 452 (588)
T 1b3u_A 408 VELAEDAKWRVRLAIIEYMPLLAGQLGV-------------------------------E----FFDEKLNSLCMAWLVD 452 (588)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCG-------------------------------G----GCCHHHHHHHHHGGGC
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHcCH-------------------------------H----HHHHHHHHHHHHHhcC
Confidence 9999888999999999999998742110 0 0112357778888888
Q ss_pred CChhhhHHHHHHHHhhh-c-ccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchh
Q 002091 859 PDHGACEASLDALVTLI-E-GERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPL 936 (968)
Q Consensus 859 ~~~~v~~~al~aL~~L~-~-~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~L 936 (968)
++..+|+.|+.+|..+. . +.. ..-...++.|..++.+++..++..+++++..+...-.. ..+.....+.|
T Consensus 453 ~~~~Vr~~a~~~l~~l~~~~~~~-------~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-~~~~~~~~~~l 524 (588)
T 1b3u_A 453 HVYAIREAATSNLKKLVEKFGKE-------WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-DITTKHMLPTV 524 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCHH-------HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCch-------hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHH
Confidence 88889988888888887 1 110 01123344444444555555555555555554321100 01111222334
Q ss_pred hhhcccCCchhhHHHHHHHHHH
Q 002091 937 VDLTQRGNSSMKSLSARVLAHL 958 (968)
Q Consensus 937 v~ll~~~~~~~~~~A~~aL~~L 958 (968)
+..+.+.++++|..+.++|..+
T Consensus 525 ~~~l~d~~~~Vr~~a~~~l~~l 546 (588)
T 1b3u_A 525 LRMAGDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHH
T ss_pred HhhCCCCCchHHHHHHHHHHHH
Confidence 4444444444555554444444
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=1.1e-18 Score=188.86 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=70.2
Q ss_pred CCCCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhccc
Q 002091 260 LEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTM 334 (968)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~~ 334 (968)
.++|++|+||||+++|+|||+++|||||||.||++|+..++.+||+|++++.+..++||..+++.|+.|+.+++.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 277 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCC
Confidence 457899999999999999999999999999999999987777799999999999999999999999999998864
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=2.4e-17 Score=177.38 Aligned_cols=227 Identities=16% Similarity=0.119 Sum_probs=183.0
Q ss_pred hhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHH-HhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHH
Q 002091 653 ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVT-IIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVL 730 (968)
Q Consensus 653 ~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv 730 (968)
.+-+..|+..|.+++. ..++...+...|+++.|+. +|.+ .+.+++..|+++|++++. ++..++.+++.|+++.|+
T Consensus 54 ~e~k~~Al~~L~~lv~--~~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 54 QQEREGALELLADLCE--NMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--ChhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4578888899999973 3345666778899999999 9987 577899999999999999 899999999999999999
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCC
Q 002091 731 NFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRP 810 (968)
Q Consensus 731 ~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~ 810 (968)
.+|.++ ++..+++.|+|+|++++.+ ++...+.+.+.|++|.|+.+|+++++.++..|+|+|.+++..
T Consensus 131 ~LL~~~-----~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~------- 197 (296)
T 1xqr_A 131 RLLDRD-----ACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG------- 197 (296)
T ss_dssp HHHHHC-----SCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHccC-----CCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-------
Confidence 999962 3578999999999999987 788888899999999999999999999999999999999842
Q ss_pred CCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHh-
Q 002091 811 IPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLED- 889 (968)
Q Consensus 811 ~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~- 889 (968)
+++....+++.|++++|+.+|.++++.+++.++.+|.+++.+.. .....+..
T Consensus 198 -------------------------~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~--~~~~~~~~~ 250 (296)
T 1xqr_A 198 -------------------------HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP--QGVRECREP 250 (296)
T ss_dssp -------------------------CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH--HHHHHHHCG
T ss_pred -------------------------ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh--hHHHHHhcc
Confidence 34567788999999999999999999999999999999992211 11111111
Q ss_pred -cCc---HH-HHHHHhcCC-ChHHHHHHHHHHHHHhcCh
Q 002091 890 -ANA---ID-RMVRFLSSP-SPKLQEKALDSVERIFRLP 922 (968)
Q Consensus 890 -~~~---i~-~L~~ll~~~-~~~v~~~a~~~L~~l~~~~ 922 (968)
... ++ .+..+..+. +.+++++|..+++++|..+
T Consensus 251 ~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 251 ELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp GGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 011 11 233333344 6789999999999999654
No 44
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=5e-16 Score=186.29 Aligned_cols=495 Identities=14% Similarity=0.131 Sum_probs=344.7
Q ss_pred hHHHHHHhhc-cChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHH
Q 002091 381 AVESIVRSLG-RRIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQM 458 (968)
Q Consensus 381 ~v~~lv~~L~-~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i 458 (968)
.++.+...+. .+...+..|+..|..++. .+. ..+. ...+|.+..+..+++...+..|+.++..+...-...
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~--~~~~--~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDLE--AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHHH--HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH--HHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 4455555443 345678889899998876 222 1111 245677777778888999999999998887443221
Q ss_pred HhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHH
Q 002091 459 AKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGL 538 (968)
Q Consensus 459 ~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~ 538 (968)
.....++.+..++.+.++.+|..|+.+|..++..-... ......+|.|..+++++++.++..|+.+|..++..-+.
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-- 236 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-- 236 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--
Confidence 12234667778888889999999999999986432211 12356788999999999999999999999999853221
Q ss_pred HHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHH
Q 002091 539 QMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQT 618 (968)
Q Consensus 539 ~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~ 618 (968)
.......++.+..++.+.+ ..++..++.+|+.++..... + ......++.+..++++.++.++..++.+
T Consensus 237 ~~~~~~~~~~l~~~~~d~~---~~vR~~a~~~l~~l~~~~~~-~--------~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 304 (588)
T 1b3u_A 237 EDLEALVMPTLRQAAEDKS---WRVRYMVADKFTELQKAVGP-E--------ITKTDLVPAFQNLMKDCEAEVRAAASHK 304 (588)
T ss_dssp HHHHHHTHHHHHHHHTCSS---HHHHHHHHHTHHHHHHHHCH-H--------HHHHTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHHHHHhCc-c--------cchhHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 1122346788888887654 67899999999999863110 0 0123567888999999999999999999
Q ss_pred HHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHH
Q 002091 619 FNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE 698 (968)
Q Consensus 619 L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~ 698 (968)
|..++..-.... +........++.+..++.+.+..+|..++++|..++.....+. .....++.+..++++ .+.+
T Consensus 305 l~~~~~~~~~~~-~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d-~~~~ 378 (588)
T 1b3u_A 305 VKEFCENLSADC-RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN----TIEHLLPLFLAQLKD-ECPE 378 (588)
T ss_dssp HHHHHHTSCTTT-HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH----HHHHTHHHHHHHHTC-SCHH
T ss_pred HHHHHHHhChhh-hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH----HHHHHHHHHHHHhCC-CchH
Confidence 999886432211 1001113468888899999999999999999999872211111 123467778888876 5678
Q ss_pred HHHHHHHHHhcCCC--CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChH
Q 002091 699 EIASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIP 776 (968)
Q Consensus 699 ~~~~Al~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~ 776 (968)
++..++..|+.+.. ..+. .....++.+..++.+ .+..+|..++.+|..++.....+ +....++|
T Consensus 379 Vr~~a~~~l~~l~~~~~~~~----~~~~~lp~l~~~~~d------~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~ 444 (588)
T 1b3u_A 379 VRLNIISNLDCVNEVIGIRQ----LSQSLLPAIVELAED------AKWRVRLAIIEYMPLLAGQLGVE----FFDEKLNS 444 (588)
T ss_dssp HHHHHHTTCHHHHHHSCHHH----HHHHHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHHCGG----GCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHHHHcCHH----HHHHHHHH
Confidence 99888887777654 2211 123456788888876 56789999999999887531111 11123578
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhc
Q 002091 777 KLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 856 (968)
Q Consensus 777 ~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL 856 (968)
.+..++.+.++.+|..|+.+++.+....+ . . ......++.|..++
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-------------------------------~--~--~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFG-------------------------------K--E--WAHATIIPKVLAMS 489 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------------------------------H--H--HHHHHTHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhC-------------------------------c--h--hHHHHHHHHHHHHh
Confidence 88999999899999999999999974210 0 0 11235778888888
Q ss_pred cCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchh
Q 002091 857 EDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPL 936 (968)
Q Consensus 857 ~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~L 936 (968)
.+.+..+|..++.++..++... + ....-...++.+..++.++++.|+..+++++..+...-.- ..+.....+.|
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~----~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~~~p~l 563 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVC----G-QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN-STLQSEVKPIL 563 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHH----H-HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH-HHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHhc----C-HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch-hhhHHHHHHHH
Confidence 8889999999999999998110 0 1112345788899999999999999999999999753211 11111223456
Q ss_pred hhhcccCCchhhHHHHHHHHHHh
Q 002091 937 VDLTQRGNSSMKSLSARVLAHLN 959 (968)
Q Consensus 937 v~ll~~~~~~~~~~A~~aL~~L~ 959 (968)
..++.+.+.++|..|..+|..+.
T Consensus 564 ~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 564 EKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHcCCCchhHHHHHHHHHHHhh
Confidence 67788899999999999999875
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.73 E-value=5.7e-17 Score=174.44 Aligned_cols=225 Identities=12% Similarity=0.127 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHH-HhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCCh
Q 002091 697 EEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLN-FLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVI 775 (968)
Q Consensus 697 ~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~-lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i 775 (968)
.+.+..|+..|.+++.+.+....+...|+++.++. +|.+ ++..+++.|+|+|++++.. ++..++.+.+.|++
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s------~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l 126 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA------GAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC------SSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCH
Confidence 35678899999999997788888999999999999 9988 6789999999999999987 89999999999999
Q ss_pred HHHHHHhhcC-ChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHh
Q 002091 776 PKLVQLLEYG-TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVR 854 (968)
Q Consensus 776 ~~Lv~lL~~~-~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~ 854 (968)
|.|+.+|.++ ++.+++.|+|+|+|++.+. +.....++++|++++|+.
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~--------------------------------~~~~~~~~~~ggi~~L~~ 174 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQ--------------------------------EAGLLQFLRLDGFSVLMR 174 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTC--------------------------------HHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCC--------------------------------cHHHHHHHHCCCHHHHHH
Confidence 9999999965 7899999999999998422 234456778999999999
Q ss_pred hccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh-hHHHhccc--
Q 002091 855 VLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE-FKQKYGKS-- 931 (968)
Q Consensus 855 lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~-- 931 (968)
+|.++++.++..|+++|.+++.+ ..+....+.+.|++++|+.++.++++.+++.|+.+|.+|..... ....++..
T Consensus 175 lL~~~d~~v~~~A~~aLs~L~~~--~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~ 252 (296)
T 1xqr_A 175 AMQQQVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL 252 (296)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGG
T ss_pred HHcCCCHHHHHHHHHHHHHHHhC--ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHH
Confidence 99999999999999999999922 13677889999999999999999999999999999999987743 22332221
Q ss_pred CCch----hhhhcc-cC-CchhhHHHHHHHHHHhhcc
Q 002091 932 AQMP----LVDLTQ-RG-NSSMKSLSARVLAHLNVLQ 962 (968)
Q Consensus 932 ~~~~----Lv~ll~-~~-~~~~~~~A~~aL~~L~~~~ 962 (968)
.... -++-++ +. ..+..++|..++...-.-+
T Consensus 253 ~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 253 GLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 1111 123333 22 4677888888888775433
No 46
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.70 E-value=9.7e-18 Score=142.36 Aligned_cols=74 Identities=41% Similarity=0.728 Sum_probs=69.8
Q ss_pred CCCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhccc
Q 002091 261 EPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTM 334 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~~ 334 (968)
++|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++....+.||..+++.|+.|..+++.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 36789999999999999999999999999999999987788999999999988999999999999999998864
No 47
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-18 Score=147.61 Aligned_cols=72 Identities=29% Similarity=0.536 Sum_probs=64.6
Q ss_pred CCCcccccccccCCCCceecC-CchhhhHHHHHHHHhcC-----CCCCCCCCCc---CCCCCCccCHhHHHHHHHHHhhc
Q 002091 262 PLQSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDG-----NNLCPLTMTV---LDTSILRPNKTLRQSIEEWKDRN 332 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~~-----~~~CP~t~~~---l~~~~l~pn~~l~~~I~~w~~~~ 332 (968)
.+++|.||||+++|+|||+++ |||||||.||++||..+ ..+||+|+.+ +....|.||..|+..|+.|+.++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 458999999999999999996 99999999999999753 4799996665 88889999999999999999877
Q ss_pred c
Q 002091 333 T 333 (968)
Q Consensus 333 ~ 333 (968)
+
T Consensus 84 ~ 84 (94)
T 2yu4_A 84 H 84 (94)
T ss_dssp C
T ss_pred c
Confidence 5
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.68 E-value=3.6e-15 Score=187.06 Aligned_cols=521 Identities=15% Similarity=0.131 Sum_probs=329.4
Q ss_pred hhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhH-HH
Q 002091 380 DAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNV-VQ 457 (968)
Q Consensus 380 ~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~-~~ 457 (968)
..++.+++.+.+ +.+.+..|+..|..+...... .......+.++.|..++.+++..++..|+.+|.+++...... ..
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 345555555544 456788899999877652111 111111357888888888999999999999999997543321 11
Q ss_pred HHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhh--cCchHHHHHhh-----------hc----------
Q 002091 458 MAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE--GNVLGPLLHLV-----------SR---------- 514 (968)
Q Consensus 458 i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL-----------~~---------- 514 (968)
.. .+.++.++..+++.++.++..|+..+..++.....+..+.. ...++.|+..+ .+
T Consensus 253 ~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 253 HM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 11 24677778888888899999999999998765444332211 24567777766 22
Q ss_pred -CCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccc
Q 002091 515 -GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLES 593 (968)
Q Consensus 515 -~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~ 593 (968)
.+..+++.|..+|..|+...+. .+. ...++.+.+.+.+.+ ..+++.|+.+|++++........ -.-
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~---~~~R~aa~~alg~i~~~~~~~~~-------~~l 398 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHE---WVVKESGILVLGAIAEGCMQGMI-------PYL 398 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSS---HHHHHHHHHHHHHTTTTTHHHHG-------GGH
T ss_pred cccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhcchHHHH-------HHH
Confidence 1224688999999999842221 111 135666777776554 78999999999999975422110 123
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChh
Q 002091 594 DKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEA 673 (968)
Q Consensus 594 ~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~ 673 (968)
.+.++.++.++++.++.++..+++++.+++...........+ .+.++.|+..+.++++.++..|+++|.+++....+.
T Consensus 399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 567889999999999999999999999987521000000011 246788888888889999999999999998332222
Q ss_pred HHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCC----------------------------C-CHHhHH------
Q 002091 674 IIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP----------------------------E-VPQFTQ------ 718 (968)
Q Consensus 674 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~----------------------------~-~~~~~~------ 718 (968)
...+ -...++.|+.+++... .+....++.+++.++ . +++.+.
T Consensus 477 -l~~~-l~~ll~~L~~~l~~~~-~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~ 553 (852)
T 4fdd_A 477 -LVPY-LAYILDTLVFAFSKYQ-HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLS 553 (852)
T ss_dssp -GGGG-HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHH
T ss_pred -hHhH-HHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 1112 1356666777766532 222222222222221 1 111100
Q ss_pred HH---HHcCC-------HHHHHHHhhcC-----------CCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHH
Q 002091 719 WL---LDAGA-------LPIVLNFLKNG-----------RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 777 (968)
Q Consensus 719 ~l---~~~g~-------l~~Lv~lL~~~-----------~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~ 777 (968)
.+ +..+. ++.++.++... .....++..++..++.+++.++...+.+....+.+.++++.
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 00 01122 22233343321 01111245678888899988887534555555556789999
Q ss_pred HHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhcc
Q 002091 778 LVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE 857 (968)
Q Consensus 778 Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~ 857 (968)
+...+.+.++.++..+.++++.++...+. .....+ ...++.++..|.
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--------------------------------~~~~~l-~~~lp~l~~~l~ 680 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLTKACFQ--------------------------------HVKPCI-ADFMPILGTNLN 680 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGG--------------------------------GTGGGH-HHHHHHHHHTCC
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHHHhhH--------------------------------HHHHHH-HHHHHHHHHHcC
Confidence 99999988899999999999999842211 000011 126788888888
Q ss_pred CCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCcHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC-hhhHHHhcccC
Q 002091 858 DPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSP--SPKLQEKALDSVERIFRL-PEFKQKYGKSA 932 (968)
Q Consensus 858 ~~~~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~ 932 (968)
.+++.++..|++++..++ .+....++. ...++.|+++++++ +..++++++.++.++... ++....+....
T Consensus 681 ~~~~~v~~~a~~alg~i~~~~~~~~~p~~-----~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~ 755 (852)
T 4fdd_A 681 PEFISVCNNATWAIGEISIQMGIEMQPYI-----PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQF 755 (852)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHGGGGGGGT-----HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhhHhHHHHH-----HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHH
Confidence 888899999999999998 332233332 35678889988765 457999999999999753 22221222222
Q ss_pred Cchhhhhccc-CCchhhHHHHHHHHHH
Q 002091 933 QMPLVDLTQR-GNSSMKSLSARVLAHL 958 (968)
Q Consensus 933 ~~~Lv~ll~~-~~~~~~~~A~~aL~~L 958 (968)
..++...+.. +|.+.|..|-+.|..|
T Consensus 756 ~~~~~~~l~~~~d~~e~~~a~~~l~~l 782 (852)
T 4fdd_A 756 IRPWCTSLRNIRDNEEKDSAFRGICTM 782 (852)
T ss_dssp HHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4556677764 6666788888877765
No 49
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.67 E-value=3e-16 Score=185.90 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=67.8
Q ss_pred CCCCcccccccccCCCCceecCCc-hhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhcc
Q 002091 261 EPLQSFYCPITRDVMVDPVETSSG-QTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~~g-~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 333 (968)
++|++|+|||++++|+|||++++| +||||.+|++|+.. +.+||.|+++|++..++||+++|+.|++||.+++
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 478999999999999999999998 79999999999976 6799999999999999999999999999998875
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.66 E-value=1.2e-14 Score=173.87 Aligned_cols=434 Identities=14% Similarity=0.123 Sum_probs=282.7
Q ss_pred hhHHHHHHhhcc-ChHHHHHHHHHHHHh-ccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHH
Q 002091 380 DAVESIVRSLGR-RIEERKLAVALLLEL-STCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQ 457 (968)
Q Consensus 380 ~~v~~lv~~L~~-~~~~~~~A~~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~ 457 (968)
|-+..+-+.|.+ +...+..++.-+..+ ..+.+ ...+.+.++.++.+++...+..+...+.+++...+....
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~ 85 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-------VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI 85 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-------CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH
Confidence 344445555543 344555555444433 22221 134567788889999999998888888877643222221
Q ss_pred HHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCcc
Q 002091 458 MAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQN 536 (968)
Q Consensus 458 i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~ 536 (968)
-.+..+.+-|.++++.+|..|+.+|.++... +.. ...++.+.+++.+.++.+|+.|+.+|.++.. +++.
T Consensus 86 ----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~-~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~ 155 (591)
T 2vgl_B 86 ----MAVNSFVKDCEDPNPLIRALAVRTMGCIRVD-KIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM 155 (591)
T ss_dssp ----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-GGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-HHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh
Confidence 2345666778888999999999999888532 211 2356789999999999999999999999985 4442
Q ss_pred HHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHH
Q 002091 537 GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRIL 616 (968)
Q Consensus 537 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al 616 (968)
+.+.+.++.|.++|.+.+ +.++..|+.+|..++........ .....+.+..++..+...++..+..++
T Consensus 156 ---~~~~~~~~~l~~lL~d~d---~~V~~~A~~aL~~i~~~~~~~~~------~~l~~~~~~~Ll~~l~~~~~~~q~~il 223 (591)
T 2vgl_B 156 ---VEDQGFLDSLRDLIADSN---PMVVANAVAALSEISESHPNSNL------LDLNPQNINKLLTALNECTEWGQIFIL 223 (591)
T ss_dssp ---HHHHHHHHHHHHTTSCSC---HHHHHHHHHHHHHHTTSCCSCCS------CCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ---cccccHHHHHHHHhCCCC---hhHHHHHHHHHHHHHhhCCCccc------hhccHHHHHHHHHcCCCCCchHHHHHH
Confidence 223578899999998665 88999999999999875432100 122345677778778888999999999
Q ss_pred HHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCC--ChhHHHHhhccccHHHHHHHhccC
Q 002091 617 QTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDG--DEAIIREHVGQKCLETLVTIIQSS 694 (968)
Q Consensus 617 ~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~--~~~~~~~~~~~~~i~~Lv~lL~~~ 694 (968)
++|..++... .... ...++.+..++++.++.++..|++++..+.... +++....+ -....+.|+.++.
T Consensus 224 ~~l~~l~~~~-~~~~------~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-- 293 (591)
T 2vgl_B 224 DCLSNYNPKD-DREA------QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-- 293 (591)
T ss_dssp HHHHTSCCCS-HHHH------HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT--
T ss_pred HHHHHhCCCC-hHHH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc--
Confidence 9998887431 2221 235778888899999999999999999997321 22222222 2345667776664
Q ss_pred CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcC
Q 002091 695 HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 773 (968)
Q Consensus 695 ~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g 773 (968)
++.+++..|+..|..+.. .++.... .+..+..+. + .+..++..++.+|.+++...+ . + .
T Consensus 294 ~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~~~~-~------d~~~Ir~~al~~L~~l~~~~n--v-~-----~ 353 (591)
T 2vgl_B 294 GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVFFVKY-N------DPIYVKLEKLDIMIRLASQAN--I-A-----Q 353 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTSCCT-T------SCHHHHHHHHHHHHHTCCSST--H-H-----H
T ss_pred CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhheecc-C------ChHHHHHHHHHHHHHHCChhh--H-H-----H
Confidence 577899999999988876 4332110 111111111 1 237789999999999886422 2 1 2
Q ss_pred ChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHH
Q 002091 774 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLV 853 (968)
Q Consensus 774 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv 853 (968)
+++.|..++.+.+.+++..+++++++++...+ -.....++.|+
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-------------------------------------~~~~~~v~~Ll 396 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-------------------------------------QSAERCVSTLL 396 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh-------------------------------------hHHHHHHHHHH
Confidence 45667788888888999999999999883210 11234567777
Q ss_pred hhccCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCcHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 002091 854 RVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLS-SPSPKLQEKALDSVERI 918 (968)
Q Consensus 854 ~lL~~~~~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l 918 (968)
+++.+.+..++..++.++..+. .+.. ...++..|.+.+. ...+.++..++|+|+.+
T Consensus 397 ~ll~~~~~~v~~e~i~~l~~ii~~~p~~---------~~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 397 DLIQTKVNYVVQEAIVVIRDIFRKYPNK---------YESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHSCSS---------CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred HHHcccchHHHHHHHHHHHHHHHHCcch---------HHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 7777666666666666666665 2210 1234455555553 34455666666666554
No 51
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.66 E-value=1.1e-14 Score=182.85 Aligned_cols=519 Identities=13% Similarity=0.107 Sum_probs=328.8
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhH-HH-Hhh-hccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCch
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELST-CNTL-RD-QIG-DVQGCILLLVTMASSDDNQASRDAQELLENLSFSDD 453 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~-~~-~i~-~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~ 453 (968)
.+.++.++..+.+ +...++.|+..|..+++ .+.. .. .+. ...+.+|.|+..+++++..+|..|+.+|.++.....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 4677788888865 45678888888888876 2221 11 000 013568888888899999999999999998874433
Q ss_pred hHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCC
Q 002091 454 NVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV 533 (968)
Q Consensus 454 n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 533 (968)
....-.-.+.++.+...+.++++++|..++.+|..++........-.-.+.++.++.++++.++.++..|+..+..++..
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 21111112467788888888899999999999999864322111101135788888999988999999999999999875
Q ss_pred CccHHHHHH--cCChHHHHHHhc-----------cc-CC-------CCcchHHHHHHHHHHhhcCcccccCCCCcccccc
Q 002091 534 PQNGLQMIK--EGAVGPLVDLLL-----------HH-SS-------SSSSLREETATAIMHLAVSTMYQESSQTPVTLLE 592 (968)
Q Consensus 534 ~~~~~~i~~--~g~v~~Lv~lL~-----------~~-~~-------~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~ 592 (968)
...+..+.. ...++.++..+. +. .+ ..-.++..|..+|..++..... .++
T Consensus 287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--------~~~- 357 (852)
T 4fdd_A 287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--------ELL- 357 (852)
T ss_dssp TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--------GGH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--------HHH-
Confidence 543332211 134566666662 20 00 1235688889999998863211 111
Q ss_pred chhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCCh
Q 002091 593 SDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDE 672 (968)
Q Consensus 593 ~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~ 672 (968)
...++.+..++.+.++.+++.++++|..++.... ..+...+ .++++.|+.++.++++.++..|+++|.+++....+
T Consensus 358 -~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 358 -PHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3467777888888999999999999999986532 2222222 34789999999999999999999999999832111
Q ss_pred hHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC--CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHH
Q 002091 673 AIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENA 750 (968)
Q Consensus 673 ~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a 750 (968)
.. ....-.+.++.|+..+.+ .+..++..|+.+|.+++. .+.....+ .+.++.|+.+++. .+......+
T Consensus 434 ~~-~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~------~~~~~~~~~ 503 (852)
T 4fdd_A 434 QP-PDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSK------YQHKNLLIL 503 (852)
T ss_dssp SC-TTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHH------CCHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHH------hChHHHHHH
Confidence 00 011123567788888876 477899999999999986 32222211 3456777777776 223333445
Q ss_pred HHHHhhccCC-----CCHHHHHHHHHcCChHHHHHH---hhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCC
Q 002091 751 VGALRRFTAP-----TNLEWQKRAAEAGVIPKLVQL---LEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSP 822 (968)
Q Consensus 751 ~~aL~~L~~~-----~~~~~~~~~~~~g~i~~Lv~l---L~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~ 822 (968)
..++..++.. ..+++-. .++|.++.. +.+.++.++ .+..++..++..-+.
T Consensus 504 ~~ai~~l~~~~~~~~~~~~~~~-----~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~---------------- 561 (852)
T 4fdd_A 504 YDAIGTLADSVGHHLNKPEYIQ-----MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQS---------------- 561 (852)
T ss_dssp HHHHHHHHHHHGGGGCCHHHHH-----HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGG----------------
T ss_pred HHHHHHHHHHhhhhhccHHHHH-----HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhH----------------
Confidence 5555555421 0222222 346666643 334556664 677777777632110
Q ss_pred CCCcccccCCCccCcccchHHhhcCChHHHHhhcc-----------------CCChhhhHHHHHHHHhhhcccccchhhH
Q 002091 823 PPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE-----------------DPDHGACEASLDALVTLIEGERLQNGSK 885 (968)
Q Consensus 823 ~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~-----------------~~~~~v~~~al~aL~~L~~~~~~~~~~~ 885 (968)
.+.=.-..+++.++.++. .++..++..++.++..++..-. .....
T Consensus 562 -----------------~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~-~~~~~ 623 (852)
T 4fdd_A 562 -----------------GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG-GNIEQ 623 (852)
T ss_dssp -----------------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG-GGGHH
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh-HhHHH
Confidence 000000112222333322 2356688889999999981111 13344
Q ss_pred HHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcC-hhhHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHhh
Q 002091 886 VLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL-PEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNV 960 (968)
Q Consensus 886 ~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~ 960 (968)
.+.+.+.++.+..++.++++.+++.+.+++..+... ++.-..|-....+.+++.+..++..++..|..++..+..
T Consensus 624 ~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~ 699 (852)
T 4fdd_A 624 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISI 699 (852)
T ss_dssp HHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999988632 111111111123456777777788899999999887743
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=3.5e-13 Score=161.17 Aligned_cols=504 Identities=12% Similarity=0.115 Sum_probs=325.4
Q ss_pred cccCCCchHHHHHhHHHHHHHhhhcchhhHHHHhcccchhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhc
Q 002091 342 PKLVSTEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDV 419 (968)
Q Consensus 342 ~~l~~~~~~~~~~aL~~l~~~~~~~~~~r~~~~i~~~~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~ 419 (968)
..|.+.+......++.++-.....+. +...+...+++.+.+ +...++.+.-.+..+++ +++...
T Consensus 20 ~~L~~~~~~~k~~~~~kli~~~~~G~---------d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~----- 85 (591)
T 2vgl_B 20 AELNNEKKEKRKEAVKKVIAAMTVGK---------DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI----- 85 (591)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHTTC---------CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHCCC---------ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----
Confidence 34444455555566666433221111 013455667777754 44566666566666655 444321
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASL 499 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i 499 (968)
-++..+...|.++++.++..|+.+|.++.. ++-.. ..++.+...|.+.++.+|..|+.++..+...... .+
T Consensus 86 -l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~ 156 (591)
T 2vgl_B 86 -MAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MV 156 (591)
T ss_dssp -TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CH
T ss_pred -HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hc
Confidence 245677788899999999999999998852 22222 2356788889999999999999999999543211 22
Q ss_pred hhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCc-cHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc
Q 002091 500 LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQ-NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST 578 (968)
Q Consensus 500 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 578 (968)
-+.+.++.|..+|.+.++.++..|+.+|..++.... ....-...+.+..|+..+.+.+ +-.+...+.+|..++..+
T Consensus 157 ~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~---~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT---EWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHTSCCCS
T ss_pred ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC---chHHHHHHHHHHHhCCCC
Confidence 235788999999999999999999999999986432 2100011123566676666544 566777777777665321
Q ss_pred ccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCC-Ch-hhHHHHHhhcCchHHHHHhhccCChhHH
Q 002091 579 MYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP-SA-GNIKTTLTQCSAIPVLVQLCEHDNENVR 656 (968)
Q Consensus 579 ~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~-~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~ 656 (968)
. -.....++.+..++++.++.++..+++++..+.... .+ ..++..+ ..+.+.|+.++. ++++++
T Consensus 234 ~-----------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr 299 (591)
T 2vgl_B 234 D-----------REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQ 299 (591)
T ss_dssp H-----------HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHH
T ss_pred h-----------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHH
Confidence 1 112456777888888999999999999999987421 12 2222222 135677777664 789999
Q ss_pred HHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcC
Q 002091 657 ANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 736 (968)
Q Consensus 657 ~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~ 736 (968)
..|+.+|..+....+ +.... .+..+. ....++..++..|+.+|.+++..... +. +++.|..++.+
T Consensus 300 ~~aL~~l~~i~~~~p-~~~~~-----~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~nv-~~-----iv~~L~~~l~~- 364 (591)
T 2vgl_B 300 YVALRNINLIVQKRP-EILKQ-----EIKVFF--VKYNDPIYVKLEKLDIMIRLASQANI-AQ-----VLAELKEYATE- 364 (591)
T ss_dssp HHHHHHHHHHHHHCC-STTTT-----CTTTTS--CCTTSCHHHHHHHHHHHHHTCCSSTH-HH-----HHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhCh-HHHHH-----HHHhhe--eccCChHHHHHHHHHHHHHHCChhhH-HH-----HHHHHHHHHhc-
Confidence 999999999973322 11111 111111 11123578999999999999873322 21 35566777776
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 002091 737 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKG 816 (968)
Q Consensus 737 ~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~ 816 (968)
.+..++..+++++++++.. .+... ...++.|+.++.+.+..++..+..++.++....+.
T Consensus 365 -----~d~~~r~~~v~aI~~la~~-~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~---------- 423 (591)
T 2vgl_B 365 -----VDVDFVRKAVRAIGRCAIK-VEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN---------- 423 (591)
T ss_dssp -----SCHHHHHHHHHHHHHHHTT-CHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS----------
T ss_pred -----CCHHHHHHHHHHHHHHHHh-ChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc----------
Confidence 5678999999999999986 33322 23578999999998889999999999998754332
Q ss_pred ccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccC-CChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHH
Q 002091 817 FWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLED-PDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDR 895 (968)
Q Consensus 817 ~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~ 895 (968)
....++..|+..+.+ .++.++..++|+|+..... ..+. ...++.
T Consensus 424 ---------------------------~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~--~~~~------~~~l~~ 468 (591)
T 2vgl_B 424 ---------------------------KYESIIATLCENLDSLDEPDARAAMIWIVGEYAER--IDNA------DELLES 468 (591)
T ss_dssp ---------------------------SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT--CTTH------HHHHHH
T ss_pred ---------------------------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHccccc--ccCH------HHHHHH
Confidence 123478888888874 5678899999999988711 0010 112233
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhcCh-hhHHHhcccCCchhhhhc-cc-CCchhhHHHHHHHHHHhh
Q 002091 896 MVRFLSSPSPKLQEKALDSVERIFRLP-EFKQKYGKSAQMPLVDLT-QR-GNSSMKSLSARVLAHLNV 960 (968)
Q Consensus 896 L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~Lv~ll-~~-~~~~~~~~A~~aL~~L~~ 960 (968)
+.+-+...++.+|..++.++.+++... +.. ......++..+ .+ .+.++|++|.-.++-|..
T Consensus 469 l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 469 FLEGFHDESTQVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 333334567889999999999997532 111 00112244443 33 567999999877776644
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.58 E-value=7.5e-12 Score=143.47 Aligned_cols=366 Identities=16% Similarity=0.180 Sum_probs=263.4
Q ss_pred chhHHHHHHhhccC--hHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcC--CCHHHHHHHHHHHHhccCCch-
Q 002091 379 DDAVESIVRSLGRR--IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS--DDNQASRDAQELLENLSFSDD- 453 (968)
Q Consensus 379 ~~~v~~lv~~L~~~--~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s--~~~~~~~~a~~~L~~Ls~~~~- 453 (968)
..+++.|+..++++ .+.++.|+..|+.+++ +++..++. ++++.|+..|+. +|.++...++.+|.++...++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk--~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSK--KYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT--TTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHH--HhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 45677777777543 5899999999999986 45566664 679999999964 588888889999988743211
Q ss_pred -----------------hHHH-HHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-ch-hhHHHhh-cCchHHHHHhh
Q 002091 454 -----------------NVVQ-MAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DH-HKASLLE-GNVLGPLLHLV 512 (968)
Q Consensus 454 -----------------n~~~-i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~-~~~~i~~-~g~i~~Lv~lL 512 (968)
+... +.+.+.++.|+.+|+..+..+|..++..|..|... ++ ++..|.. +++|+.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 1112 24578899999999999999999999999999543 33 6777775 79999999999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCccHHHHHH-cCChHHHHHHhcccCC-CCcchHHHHHHHHHHhhcCcccccCCCCcccc
Q 002091 513 SRGDIQMKKVAVKALRNLSSVPQNGLQMIK-EGAVGPLVDLLLHHSS-SSSSLREETATAIMHLAVSTMYQESSQTPVTL 590 (968)
Q Consensus 513 ~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~i 590 (968)
.+....+|..++..|.+|+....+.++++. .|+++.|+.++..... +-..+.+.|+.+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l-------------------- 235 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLIL-------------------- 235 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHH--------------------
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHH--------------------
Confidence 999999999999999999986666666555 5999999999986431 001234444444
Q ss_pred ccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChh------HHHH---HHH
Q 002091 591 LESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNEN------VRAN---AVK 661 (968)
Q Consensus 591 l~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~------v~~~---a~~ 661 (968)
|.+|.+. |...+..+++.|+++.|..++..+++. ...+ +..
T Consensus 236 ----------------------------l~nLLr~--N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~ 285 (651)
T 3grl_A 236 ----------------------------LQNLLKN--NNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQ 285 (651)
T ss_dssp ----------------------------HHHHHTT--CHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHhc--CHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHH
Confidence 4444443 555678899999999999999755321 2233 566
Q ss_pred HHHHhccCCC-----hhHHHHhhccccHHHHHHHhccCC-CHHHHHHHHHHHhcCCC-CHHhHHHHHHcC-----CHHHH
Q 002091 662 LFCCLVDDGD-----EAIIREHVGQKCLETLVTIIQSSH-NEEEIASAMGILSKLPE-VPQFTQWLLDAG-----ALPIV 729 (968)
Q Consensus 662 ~L~~Ls~~~~-----~~~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g-----~l~~L 729 (968)
+++.|...+. ..+...+.+.|+++.|++++.... ...++..|+.+++.+.. ++...+.+.... ..+.+
T Consensus 286 iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~l 365 (651)
T 3grl_A 286 LVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAI 365 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHH
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChH
Confidence 7777773322 234556778899999999988753 67899999999999998 888888877643 22344
Q ss_pred HHH----hhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc----------CChH---HHHHHhhcCChHHHHH
Q 002091 730 LNF----LKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA----------GVIP---KLVQLLEYGTTLTKEH 792 (968)
Q Consensus 730 v~l----L~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~----------g~i~---~Lv~lL~~~~~~v~~~ 792 (968)
+.+ +.+. +...+|-.++.++..+... +++.+..+..+ +.++ .|..-+-+.|+.----
T Consensus 366 i~lL~~~~~~~-----~~~~lR~Aa~~cl~ay~~~-N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wf 439 (651)
T 3grl_A 366 VVLLMSMVNER-----QPFVLRCAVLYCFQCFLYK-NQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWC 439 (651)
T ss_dssp HHHHHHHTCTT-----SCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHhccc-----ccHHHHHHHHHHHHHHHhC-CHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHH
Confidence 443 3331 4578899999999999987 88777777654 1111 2344455567754455
Q ss_pred HHHHHhhhcccC
Q 002091 793 AATSLARFSKNS 804 (968)
Q Consensus 793 Aa~aL~nl~~~s 804 (968)
|+.+|..+..++
T Consensus 440 Aavil~hll~~n 451 (651)
T 3grl_A 440 AAVALAHALQEN 451 (651)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 777777776544
No 54
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.56 E-value=4.2e-16 Score=123.34 Aligned_cols=56 Identities=25% Similarity=0.346 Sum_probs=50.2
Q ss_pred CcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHh
Q 002091 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKT 320 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~ 320 (968)
..|+||||+++|+|||++ +|||+|||.+|++|+..+ .+||+|+++|...+|+||..
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECCC
T ss_pred CeEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECcc
Confidence 369999999999999999 999999999999999753 57999999999999999864
No 55
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=3.5e-12 Score=160.20 Aligned_cols=519 Identities=13% Similarity=0.109 Sum_probs=331.0
Q ss_pred chhHHHHHHhhcc--ChHHHHHHHHHHHHhccC--hhHH--HHhhhccChHHHHHHhhcCC--CHHHHHHHHHHHHhccC
Q 002091 379 DDAVESIVRSLGR--RIEERKLAVALLLELSTC--NTLR--DQIGDVQGCILLLVTMASSD--DNQASRDAQELLENLSF 450 (968)
Q Consensus 379 ~~~v~~lv~~L~~--~~~~~~~A~~~L~~Ls~~--~~~~--~~i~~~~g~i~~Lv~lL~s~--~~~~~~~a~~~L~~Ls~ 450 (968)
...++.++..+.+ ++..+..|+..|..+++. ++.+ .... ...++.++..+.++ +..++..|+.+|.++..
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS--NNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3567777777754 456788888888888762 2211 1111 24567777777766 78999999999988642
Q ss_pred C-chhHH-HHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc-hhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHH
Q 002091 451 S-DDNVV-QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKAL 527 (968)
Q Consensus 451 ~-~~n~~-~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 527 (968)
. ..+-. .......++.+...+.+.++.+|..++.+|..+.... +.-........++.++..+.+.++.++..|+.++
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1 11100 0001123556666777788999999999998885321 1111111115667777788888999999999999
Q ss_pred HHhcCCCcc------------------HHHHHHcCChHHHHHHhcccCC----CCcchHHHHHHHHHHhhcCcccccCCC
Q 002091 528 RNLSSVPQN------------------GLQMIKEGAVGPLVDLLLHHSS----SSSSLREETATAIMHLAVSTMYQESSQ 585 (968)
Q Consensus 528 ~~Ls~~~~~------------------~~~i~~~g~v~~Lv~lL~~~~~----~~~~~~~~a~~~L~~La~~~~~~~~~~ 585 (968)
..++..... -...+ ...++.++..|.+... +...++..+..+|..++.....
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~----- 364 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN----- 364 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-----
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-----
Confidence 998753211 01111 3467788888865321 1246788899999998863210
Q ss_pred CccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHH
Q 002091 586 TPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCC 665 (968)
Q Consensus 586 ~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~ 665 (968)
.+ -...++.+...+.+.++..++.++.++..++.......+...+. ..++.|+..+.+.++.++..++++|..
T Consensus 365 ---~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~ 437 (861)
T 2bpt_A 365 ---HI--LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGR 437 (861)
T ss_dssp ---GG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred ---hH--HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 01 13456667777788899999999999999986543334443443 368889999998999999999999999
Q ss_pred hccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC--C----HHhHHHHHHcCCHHHHHHHhhcCCCC
Q 002091 666 LVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--V----PQFTQWLLDAGALPIVLNFLKNGRQN 739 (968)
Q Consensus 666 Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~--~----~~~~~~l~~~g~l~~Lv~lL~~~~~~ 739 (968)
++....+.......-...++.|+..+.+. ..++..|+.+|.+++. . ......+ ...++.++.++.+.+
T Consensus 438 l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d-- 511 (861)
T 2bpt_A 438 IADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRID-- 511 (861)
T ss_dssp HHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSC--
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcC--
Confidence 87321110000001224677788888663 7888999999988765 1 1111111 234677777777522
Q ss_pred CCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC---------------ChHHHHHHHHHHhhhcccC
Q 002091 740 DPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG---------------TTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 740 ~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~---------------~~~v~~~Aa~aL~nl~~~s 804 (968)
.+..++..++.++..++.....+....+. .++|.++..+... ...++..+..+|.++....
T Consensus 512 --~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~ 587 (861)
T 2bpt_A 512 --NEFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587 (861)
T ss_dssp --CGGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --cchHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999998763333333322 3567777777632 3467888999999987432
Q ss_pred CCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCCh-hhhHHHHHHHHhhh--cccccc
Q 002091 805 LGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH-GACEASLDALVTLI--EGERLQ 881 (968)
Q Consensus 805 ~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~-~v~~~al~aL~~L~--~~~~~~ 881 (968)
+. ... -.-...++.++.++.+.+. .+++.++.++..++ .+..
T Consensus 588 ~~--------------------------------~~~-~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-- 632 (861)
T 2bpt_A 588 PS--------------------------------SVE-PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-- 632 (861)
T ss_dssp GG--------------------------------GTG-GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG--
T ss_pred hh--------------------------------hhH-HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh--
Confidence 11 000 0112467778888887766 89999999999998 2221
Q ss_pred hhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChh-hHHHhcccCCchhhhhcccCC--chhhHHHHHHHHHH
Q 002091 882 NGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE-FKQKYGKSAQMPLVDLTQRGN--SSMKSLSARVLAHL 958 (968)
Q Consensus 882 ~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~Lv~ll~~~~--~~~~~~A~~aL~~L 958 (968)
....+. ..++.+...++++++.++..+++++..+...-. ....+.......+++.+.+.+ .++|..+..++..+
T Consensus 633 -~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l 709 (861)
T 2bpt_A 633 -FEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDI 709 (861)
T ss_dssp -GHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHH
T ss_pred -HHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHH
Confidence 222222 257788888888888999999999988864211 111122222344666676654 78999998888776
Q ss_pred hh
Q 002091 959 NV 960 (968)
Q Consensus 959 ~~ 960 (968)
..
T Consensus 710 ~~ 711 (861)
T 2bpt_A 710 AS 711 (861)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 56
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.52 E-value=1.3e-11 Score=141.59 Aligned_cols=439 Identities=13% Similarity=0.090 Sum_probs=296.0
Q ss_pred hHHHHHhHHHHHHHhhhcchhhHHHHhcccchhHHHHHHhhcc---ChHHHHHHHHHHHHhcc-Chh-------------
Q 002091 349 VEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGR---RIEERKLAVALLLELST-CNT------------- 411 (968)
Q Consensus 349 ~~~~~~aL~~l~~~~~~~~~~r~~~~i~~~~~~v~~lv~~L~~---~~~~~~~A~~~L~~Ls~-~~~------------- 411 (968)
.+....|+..|++++++... - +. .++++.++..|.. +.+..+.++..|..+-. +++
T Consensus 36 ~eDRR~Av~~Lk~~sk~y~~---~---Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~ 108 (651)
T 3grl_A 36 LDDRRNAVRALKSLSKKYRL---E---VG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSED 108 (651)
T ss_dssp HHHHHHHHHHHHHTTTTTTT---H---HH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------C
T ss_pred hhHHHHHHHHHHHHHHHhHH---H---hh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence 35566788888888765332 1 22 6789999999965 45667788888876533 221
Q ss_pred ----HHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCc-h-hHHHHHh-CCchHHHHHHHhcCCHHHHHHHHH
Q 002091 412 ----LRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSD-D-NVVQMAK-ANYFKHLLQRLSAGPESVKMRMAT 484 (968)
Q Consensus 412 ----~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~-~-n~~~i~~-~g~v~~Lv~~L~~~~~~~~~~aa~ 484 (968)
+.+.+....+.|+.|+.+|.+++..++..++.+|..|+.+. + ++..|.. .++++.|+.+|++..+.+|..++.
T Consensus 109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 22333333788999999999999999999999999998543 3 6777875 699999999999999999999999
Q ss_pred HHHHhccCchhhHHHhh-cCchHHHHHhhhcCCH----HHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCC
Q 002091 485 TLAEMELTDHHKASLLE-GNVLGPLLHLVSRGDI----QMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSS 558 (968)
Q Consensus 485 ~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~----~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~ 558 (968)
.|.+|+.+.....+++. .|+++.|+.+++.+.. .+..+++.+|.||.. ++.|+..+.+.|+++.|..+|..+..
T Consensus 189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 99999877655555555 7999999999987543 788999999999996 56799999999999999999875331
Q ss_pred C---CcchHHH---HHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccC--CHHHHHHHHHHHHHhccCCChhh
Q 002091 559 S---SSSLREE---TATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT--GPNVQQRILQTFNALCRSPSAGN 630 (968)
Q Consensus 559 ~---~~~~~~~---a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~--~~~~~~~al~~L~~L~~~~~~~~ 630 (968)
. .+....+ ++.++.-+...+......+.+...+...|++..++.++... ...++..++.++..+.++ +..
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg--N~~ 346 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG--CQV 346 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT--CHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC--CHH
Confidence 1 0112333 45555555553221000112334667788899998887744 668899999999999875 666
Q ss_pred HHHHHhhcC-----chHHHHH----hhcc-CChhHHHHHHHHHHHhccCCChhHHHHhh----ccc---------cHHHH
Q 002091 631 IKTTLTQCS-----AIPVLVQ----LCEH-DNENVRANAVKLFCCLVDDGDEAIIREHV----GQK---------CLETL 687 (968)
Q Consensus 631 ~~~~i~~~g-----~i~~Lv~----ll~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~----~~~---------~i~~L 687 (968)
.+..+.... ..+.++. ++.+ ....+|.+|+.++.... .++++....+. ... .-..|
T Consensus 347 ~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~-~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll 425 (651)
T 3grl_A 347 NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL-YKNQKGQGEIVSTLLPSTIDATGNTVSAGQLL 425 (651)
T ss_dssp HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHH
T ss_pred HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH-hCCHHHHHHHHHhcCCcccccCCCCCCcchhh
Confidence 677766432 2233444 3433 35788999999999887 44433222221 100 01123
Q ss_pred HHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHc------C-----CHHHHHHHhhcCCCCCCchhHHHHHHHHHHh
Q 002091 688 VTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDA------G-----ALPIVLNFLKNGRQNDPNRFQVVENAVGALR 755 (968)
Q Consensus 688 v~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~------g-----~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~ 755 (968)
..-+-+.+.....- |..+|.++.. +++.++.+..- | .++.+..+|..+ .+..++-.-+..|.
T Consensus 426 ~~~l~s~d~~~~wf-Aavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~-----~~~ri~vgyL~LL~ 499 (651)
T 3grl_A 426 CGGLFSTDSLSNWC-AAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQG-----SKIQTRVGLLMLLC 499 (651)
T ss_dssp HHHHTSSCHHHHHH-HHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTT-----CCHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHH-HHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcC-----CchhHHHHHHHHHH
Confidence 34443332223333 5556777766 77776655541 1 245566666543 23455555566666
Q ss_pred hccCCCCHHHHHHHHHcC-ChHHHHHHhhc--C--ChHHHHHHHHHHhhhcccC
Q 002091 756 RFTAPTNLEWQKRAAEAG-VIPKLVQLLEY--G--TTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 756 ~L~~~~~~~~~~~~~~~g-~i~~Lv~lL~~--~--~~~v~~~Aa~aL~nl~~~s 804 (968)
-+... ++.....+...| .++.|+..+.. + ++-++--++..|+-.-..+
T Consensus 500 ~WL~e-~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~ 552 (651)
T 3grl_A 500 TWLSN-CPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFN 552 (651)
T ss_dssp HHHTT-CHHHHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhC-ChHHHHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcc
Confidence 66665 888888888776 58999988853 2 3457888888887665444
No 57
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-14 Score=124.00 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=66.2
Q ss_pred CCCCcccccccccCCCCceecC-CchhhhHHHHHHHHhc-CCCCCCCCCCcC-CCCCCccCHhHHHHHHHHHhhcc
Q 002091 261 EPLQSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSD-GNNLCPLTMTVL-DTSILRPNKTLRQSIEEWKDRNT 333 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~-~~~~CP~t~~~l-~~~~l~pn~~l~~~I~~w~~~~~ 333 (968)
..+++|.||||+++|.|||+++ |||+||+.||.+|+.. +...||.|++++ ....+.||..++++|+.|...++
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999 9999999999999964 458999999998 67789999999999999998765
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=6.4e-11 Score=148.96 Aligned_cols=277 Identities=9% Similarity=0.073 Sum_probs=183.5
Q ss_pred chhHHHHHHhhcc---ChHHHHHHHHHHHHhcc--ChhHHHHhhhccChHHHHHHhhcCC--CHHHHHHHHHHHHhccCC
Q 002091 379 DDAVESIVRSLGR---RIEERKLAVALLLELST--CNTLRDQIGDVQGCILLLVTMASSD--DNQASRDAQELLENLSFS 451 (968)
Q Consensus 379 ~~~v~~lv~~L~~---~~~~~~~A~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~lL~s~--~~~~~~~a~~~L~~Ls~~ 451 (968)
...++.+...+.+ ++..+..|+..|..++. .++.-... ....++.+...+.++ +..++..|+.+|.++...
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG--HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567777777754 45678888888888875 22221111 135677788888766 688999999999987632
Q ss_pred -chhH-HHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHH
Q 002091 452 -DDNV-VQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALR 528 (968)
Q Consensus 452 -~~n~-~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 528 (968)
..+- ........++.+...+...+.++|..++.+|..+... ...-........++.++..+.+.++.++..|+..+.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 1110 0001112455666667777889999999999888532 221111222367888888888888999999999998
Q ss_pred HhcCCCc-------------------cHHHH--HHcCChHHHHHHhcccC----CCCcchHHHHHHHHHHhhcCcccccC
Q 002091 529 NLSSVPQ-------------------NGLQM--IKEGAVGPLVDLLLHHS----SSSSSLREETATAIMHLAVSTMYQES 583 (968)
Q Consensus 529 ~Ls~~~~-------------------~~~~i--~~~g~v~~Lv~lL~~~~----~~~~~~~~~a~~~L~~La~~~~~~~~ 583 (968)
+++.... ....+ .-...++.++..|.... ++...++..|..+|..++..... .
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h
Confidence 8874210 00000 01235677777775321 12357888899999998863211 1
Q ss_pred CCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHH
Q 002091 584 SQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLF 663 (968)
Q Consensus 584 ~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L 663 (968)
+ -...++.+...+.+.++.++..++++|..++.......+...+. ..++.|+..+.++++.++..|+++|
T Consensus 363 ------~--~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l 432 (876)
T 1qgr_A 363 ------I--VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTV 432 (876)
T ss_dssp ------G--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------h--HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 13456667777888899999999999999986543233333332 3788999999989999999999999
Q ss_pred HHhccC
Q 002091 664 CCLVDD 669 (968)
Q Consensus 664 ~~Ls~~ 669 (968)
.+++..
T Consensus 433 ~~~~~~ 438 (876)
T 1qgr_A 433 GRICEL 438 (876)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999843
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.44 E-value=9.3e-12 Score=156.32 Aligned_cols=511 Identities=13% Similarity=0.116 Sum_probs=316.4
Q ss_pred HHHHHHhhc-cChHHHHHHHHHHHHhcc-Ch-hHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhH---
Q 002091 382 VESIVRSLG-RRIEERKLAVALLLELST-CN-TLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNV--- 455 (968)
Q Consensus 382 v~~lv~~L~-~~~~~~~~A~~~L~~Ls~-~~-~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~--- 455 (968)
++.+...+. .+.+.+..|+..|..+.. .+ .+...+. ...++.+...+.+.+..++..|+..+..++......
T Consensus 226 l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333444443 345678888888888865 22 2333332 156777777888889999999999998886432110
Q ss_pred ---------------HHHHhCCchHHHHHHHhcC-------CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhh
Q 002091 456 ---------------VQMAKANYFKHLLQRLSAG-------PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS 513 (968)
Q Consensus 456 ---------------~~i~~~g~v~~Lv~~L~~~-------~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~ 513 (968)
..+. ...++.++..|... +..++..++.+|..++..-.. .+ -...++.+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~-~~~l~~~l~~~l~ 379 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HI-LEPVLEFVEQNIT 379 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTT
T ss_pred hhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hH-HHHHHHHHHHHcC
Confidence 0011 23456666666542 346888888999888542110 01 1235666777778
Q ss_pred cCCHHHHHHHHHHHHHhcCCCc-c-HHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccc
Q 002091 514 RGDIQMKKVAVKALRNLSSVPQ-N-GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLL 591 (968)
Q Consensus 514 ~~~~~~~~~a~~aL~~Ls~~~~-~-~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il 591 (968)
+.+...+..|+.+|..++.... . -...+ ..+++.|+..+.+.+ +.++..++++|+.++..-...-. .--
T Consensus 380 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~---~~vr~~a~~~l~~l~~~~~~~~~-----~~~ 450 (861)
T 2bpt_A 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS---LQVKETTAWCIGRIADSVAESID-----PQQ 450 (861)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHGGGSC-----TTT
T ss_pred CCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHhhhhcC-----CHH
Confidence 8889999999999999996432 1 11112 246788888887654 78999999999999863211000 001
Q ss_pred cchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCC---hhhHHHHHhhcCchHHHHHhhccCC--hhHHHHHHHHHHHh
Q 002091 592 ESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPS---AGNIKTTLTQCSAIPVLVQLCEHDN--ENVRANAVKLFCCL 666 (968)
Q Consensus 592 ~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~---~~~~~~~i~~~g~i~~Lv~ll~~~~--~~v~~~a~~~L~~L 666 (968)
.-...++.++..+.+. +.++..++++|.+++..-. ...+...+ ...++.|+.++.+.+ ..++..++.++..+
T Consensus 451 ~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 451 HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence 1245677788777765 8999999999998875311 11111112 134677788887543 78999999999999
Q ss_pred ccCCChhHHHHhhccccHHHHHHHhccC--------------CCHHHHHHHHHHHhcCCC-C-HHhHHHHHHcCCHHHHH
Q 002091 667 VDDGDEAIIREHVGQKCLETLVTIIQSS--------------HNEEEIASAMGILSKLPE-V-PQFTQWLLDAGALPIVL 730 (968)
Q Consensus 667 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~--------------~~~~~~~~Al~~L~nL~~-~-~~~~~~l~~~g~l~~Lv 730 (968)
+....... ...+ ...++.++..+... ...+++..++.+|.+++. - ...... -...++.++
T Consensus 528 ~~~~~~~~-~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~l~ 603 (861)
T 2bpt_A 528 VEYATDTV-AETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADMLMGLFF 603 (861)
T ss_dssp HHHCCGGG-HHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--HHHHHHHHH
T ss_pred HHHcchhh-HHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHH
Confidence 84433322 1111 13455566665431 123456678888887766 2 221111 123567777
Q ss_pred HHhhcCCCCCCchh-HHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCC
Q 002091 731 NFLKNGRQNDPNRF-QVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSR 809 (968)
Q Consensus 731 ~lL~~~~~~~~~~~-~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~ 809 (968)
..+.+. +. .+++.++.++..++.....+....+ ..++|.|...+.+.++.++..+..++..++...+
T Consensus 604 ~~l~~~------~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~---- 671 (861)
T 2bpt_A 604 RLLEKK------DSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE---- 671 (861)
T ss_dssp HHHHST------TGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG----
T ss_pred HHHccC------CCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc----
Confidence 788773 33 7899999999988864223333333 2378899999988888999999999999874221
Q ss_pred CCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCC--hhhhHHHHHHHHhhh--cccccchhhH
Q 002091 810 PIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD--HGACEASLDALVTLI--EGERLQNGSK 885 (968)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~--~~v~~~al~aL~~L~--~~~~~~~~~~ 885 (968)
..+.-.-...++.++..+.+.+ +.++..++.++..++ .+..+.++.
T Consensus 672 -----------------------------~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l- 721 (861)
T 2bpt_A 672 -----------------------------EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL- 721 (861)
T ss_dssp -----------------------------GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred -----------------------------hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH-
Confidence 0111112356777888887754 789999999999998 332222221
Q ss_pred HHHhcCcHHHHHHHhcCCC-----------hHHHHHHHHHHHHHhcC-hhhHHHhccc---CCchhhhhcccC----Cch
Q 002091 886 VLEDANAIDRMVRFLSSPS-----------PKLQEKALDSVERIFRL-PEFKQKYGKS---AQMPLVDLTQRG----NSS 946 (968)
Q Consensus 886 ~i~~~~~i~~L~~ll~~~~-----------~~v~~~a~~~L~~l~~~-~~~~~~~~~~---~~~~Lv~ll~~~----~~~ 946 (968)
...++.+...+.... ..++..++.++..+... .+....+... ....|...+.+. +..
T Consensus 722 ----~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~ 797 (861)
T 2bpt_A 722 ----NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDA 797 (861)
T ss_dssp ----HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHH
T ss_pred ----HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 234667777765421 35788888888877632 1001112211 122344444543 788
Q ss_pred hhHHHHHHHHHHhh
Q 002091 947 MKSLSARVLAHLNV 960 (968)
Q Consensus 947 ~~~~A~~aL~~L~~ 960 (968)
+|+.|..+|..|..
T Consensus 798 vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 798 TSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.42 E-value=8.5e-11 Score=140.95 Aligned_cols=475 Identities=11% Similarity=0.069 Sum_probs=311.2
Q ss_pred HHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHH
Q 002091 382 VESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMA 459 (968)
Q Consensus 382 v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~ 459 (968)
...+++.+++ +.+.++-+.-.+..++. +++.... ++..|.+-|.++++.++..|+.+|.++... .+.
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l------~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~ 140 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL------MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC 140 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH------HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH------HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH
Confidence 3344555543 44555555555666665 4433222 355678888899999999999999998631 122
Q ss_pred hCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCcc-H
Q 002091 460 KANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN-G 537 (968)
Q Consensus 460 ~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~-~ 537 (968)
...++.+.+.|++.++.+|..|+.++.++.. +++.. .+.++.+..+|.+.++.++..|+.+|..++..... .
T Consensus 141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 2456788889999999999999999999954 33221 26788889999999999999999999999864321 1
Q ss_pred HHHHHcCChHHHHHHhccc------------CCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhc
Q 002091 538 LQMIKEGAVGPLVDLLLHH------------SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN 605 (968)
Q Consensus 538 ~~i~~~g~v~~Lv~lL~~~------------~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~ 605 (968)
..+ ...++.++++|.+- ...++-++...+.+|+.++..+... .......+..++.
T Consensus 215 ~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-----------~~~~~~~L~~l~~ 281 (618)
T 1w63_A 215 AHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-----------SEAMNDILAQVAT 281 (618)
T ss_dssp HHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-----------HHTTHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHh
Confidence 122 25788888887641 0112567788888888887532110 1123344444432
Q ss_pred ------cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhh
Q 002091 606 ------LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHV 679 (968)
Q Consensus 606 ------~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~ 679 (968)
+.+..+...+++++..+... ...+ . .++..|..++.+++++++..|+.+|..++. ..+. .+
T Consensus 282 ~~~~~~~~~~aV~~ea~~~i~~l~~~---~~l~----~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~-~~p~----~~ 348 (618)
T 1w63_A 282 NTETSKNVGNAILYETVLTIMDIKSE---SGLR----V-LAINILGRFLLNNDKNIRYVALTSLLKTVQ-TDHN----AV 348 (618)
T ss_dssp TSCCSSTHHHHHHHHHHHHHHHSCCC---HHHH----H-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHH-HHHH----HH
T ss_pred ccccccchHHHHHHHHHHHHHhcCCC---HHHH----H-HHHHHHHHHHhCCCCchHHHHHHHHHHHHh-hCHH----HH
Confidence 23456777888888887432 2211 1 357888899999999999999999999972 2222 11
Q ss_pred ccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccC
Q 002091 680 GQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 759 (968)
Q Consensus 680 ~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~ 759 (968)
......++.++.+ .+..++..|+.+|..++..... +. .++.+...+.+ .+.+++..++.++++++.
T Consensus 349 -~~~~~~i~~~l~d-~d~~Ir~~alelL~~l~~~~nv-~~-----iv~eL~~~l~~------~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 349 -QRHRSTIVDCLKD-LDVSIKRRAMELSFALVNGNNI-RG-----MMKELLYFLDS------CEPEFKADCASGIFLAAE 414 (618)
T ss_dssp -GGGHHHHHHGGGS-SCHHHHHHHHHHHHHHCCSSST-HH-----HHHHHHHHHHH------CCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHccC-CChhHHHHHHHHHHHHcccccH-HH-----HHHHHHHHHHh------CCHHHHHHHHHHHHHHHH
Confidence 2345677777776 5788999999999999873222 22 24677777777 567899999999999997
Q ss_pred CCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCccc
Q 002091 760 PTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIES 839 (968)
Q Consensus 760 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~ 839 (968)
...+.... .++.|++++......++..+...+..+....+.
T Consensus 415 k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--------------------------------- 455 (618)
T 1w63_A 415 KYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--------------------------------- 455 (618)
T ss_dssp SSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS---------------------------------
T ss_pred HhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChh---------------------------------
Confidence 52233222 268888999887666777777777777643322
Q ss_pred chHHhhcCChHHHHhhccC--CChhhhHHHHHHHHhhhc-ccc--cchh-hHHHHhcCcHHHHHHHhc--CCChHHHHHH
Q 002091 840 SFCLLEANAVRPLVRVLED--PDHGACEASLDALVTLIE-GER--LQNG-SKVLEDANAIDRMVRFLS--SPSPKLQEKA 911 (968)
Q Consensus 840 ~~~l~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~~L~~-~~~--~~~~-~~~i~~~~~i~~L~~ll~--~~~~~v~~~a 911 (968)
....++..|+..+.+ ....+...++|.|+...+ -.. .+.. -..+....+++.|..++. ..++.++..+
T Consensus 456 ----l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~ 531 (618)
T 1w63_A 456 ----MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYA 531 (618)
T ss_dssp ----THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 112357778888874 334455578888888861 000 0000 000111234666777664 5789999999
Q ss_pred HHHHHHHhcCh-hhHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHhh
Q 002091 912 LDSVERIFRLP-EFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNV 960 (968)
Q Consensus 912 ~~~L~~l~~~~-~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~ 960 (968)
++++.+++... +....+ ...|-....+.|.++|++|.-.++-+..
T Consensus 532 lta~~Kl~~~~~~~~~~l----~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 532 LTAIMKLSTRFTCTVNRI----KKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHTTCSSCHHHH----HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcchHHHH----HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 99999997532 221111 1123344556788999999888877765
No 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.7e-13 Score=138.54 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=63.5
Q ss_pred CCCcccccccccCCCCceec-CCchhhhHHHHHHHHhc-CCCCCCC--CCCcCCCCCCccCHhHHHHHHHHHhh
Q 002091 262 PLQSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSD-GNNLCPL--TMTVLDTSILRPNKTLRQSIEEWKDR 331 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~-~~~~CP~--t~~~l~~~~l~pn~~l~~~I~~w~~~ 331 (968)
...+|.||||+++|+|||+. .|||+|||.||.+||.. +..+||+ |++.+....|.||..|+..|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 45799999999999999985 99999999999999975 4578999 88999999999999999999999764
No 62
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.35 E-value=8e-11 Score=126.66 Aligned_cols=259 Identities=17% Similarity=0.125 Sum_probs=201.0
Q ss_pred HHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccH
Q 002091 458 MAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNG 537 (968)
Q Consensus 458 i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~ 537 (968)
+.+.+.++.|+..|.++++.+|..|+.+|..+. ..++++.|+.+|+++++.++..|+.+|.++...+...
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345778999999999999999999999998875 2457899999999999999999999999987533321
Q ss_pred HHHHHcCChHHHHH-HhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHH
Q 002091 538 LQMIKEGAVGPLVD-LLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRIL 616 (968)
Q Consensus 538 ~~i~~~g~v~~Lv~-lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al 616 (968)
.. .++.|.+ ++.+.+ +.++..++.+|+++..... ......++.++.++++.++.++..++
T Consensus 89 ~~-----l~~~L~~~~~~d~~---~~vr~~a~~aL~~l~~~~~-----------~~~~~~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKS---ACVRATAIESTAQRCKKNP-----------IYSPKIVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp HH-----HHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHCG-----------GGHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hH-----HHHHHHHHHhcCCC---HHHHHHHHHHHHHHhccCC-----------cccHHHHHHHHHHhhCCCHHHHHHHH
Confidence 11 2233332 233333 7899999999999874221 11245788899999999999999999
Q ss_pred HHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCC
Q 002091 617 QTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHN 696 (968)
Q Consensus 617 ~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 696 (968)
++|.++.. .++++.|+.++.+++..++..|+++|..+. ... ...++.|+.++.+ .+
T Consensus 150 ~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~~~---------~~~~~~L~~~l~d-~~ 205 (280)
T 1oyz_A 150 FAISVIND-------------KATIPLLINLLKDPNGDVRNWAAFAININK-YDN---------SDIRDCFVEMLQD-KN 205 (280)
T ss_dssp HHHHTC----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT-CCC---------HHHHHHHHHHTTC-SC
T ss_pred HHHHhcCC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-cCc---------HHHHHHHHHHhcC-CC
Confidence 99987642 247999999999999999999999999985 222 2467888999876 57
Q ss_pred HHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChH
Q 002091 697 EEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIP 776 (968)
Q Consensus 697 ~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~ 776 (968)
..++..|+.+|+++.. ..+++.|+.++.+ ++ ++..++.+|.++.. ..++|
T Consensus 206 ~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d------~~--vr~~a~~aL~~i~~------------~~~~~ 255 (280)
T 1oyz_A 206 EEVRIEAIIGLSYRKD----------KRVLSVLCDELKK------NT--VYDDIIEAAGELGD------------KTLLP 255 (280)
T ss_dssp HHHHHHHHHHHHHTTC----------GGGHHHHHHHHTS------SS--CCHHHHHHHHHHCC------------GGGHH
T ss_pred HHHHHHHHHHHHHhCC----------HhhHHHHHHHhcC------cc--HHHHHHHHHHhcCc------------hhhhH
Confidence 8899999999999873 3468888999987 22 68899999998864 25689
Q ss_pred HHHHHhhc-CChHHHHHHHHHHhh
Q 002091 777 KLVQLLEY-GTTLTKEHAATSLAR 799 (968)
Q Consensus 777 ~Lv~lL~~-~~~~v~~~Aa~aL~n 799 (968)
.|..++.+ .++++...+..+|.+
T Consensus 256 ~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 256 VLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCcHHHHHHHHHhhc
Confidence 99999975 467888888887764
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.35 E-value=1.6e-10 Score=124.33 Aligned_cols=256 Identities=13% Similarity=0.111 Sum_probs=197.7
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHH
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQ 457 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~ 457 (968)
..+++.++..|.+ ++..+..|+..|..+. . .++++.|+.++.++++.++..|+.+|..+...+.....
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~-~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~ 90 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRG----------G-QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 90 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------C-chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH
Confidence 5678889999865 4567888888888764 2 46789999999999999999999999988643322111
Q ss_pred HHhCCchHHHH-HHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCcc
Q 002091 458 MAKANYFKHLL-QRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN 536 (968)
Q Consensus 458 i~~~g~v~~Lv-~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~ 536 (968)
.++.|. ..+++.++.+|..++.+|..+...+. .....+++.|+.+++++++.++..|+.+|.++..
T Consensus 91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 122333 23567789999999999999853211 1123578999999999999999999999998843
Q ss_pred HHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHH
Q 002091 537 GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRIL 616 (968)
Q Consensus 537 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al 616 (968)
.++++.|+.++.+.+ +.++..|+++|+.+... ...+++.++.++++.++.++..++
T Consensus 158 ------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~~---------------~~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPN---GDVRNWAAFAININKYD---------------NSDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp -------CCHHHHHHHHTCSS---HHHHHHHHHHHHHHTCC---------------CHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCC---HHHHHHHHHHHHhhccC---------------cHHHHHHHHHHhcCCCHHHHHHHH
Confidence 358999999998765 78999999999988421 246788999999999999999999
Q ss_pred HHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCC
Q 002091 617 QTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHN 696 (968)
Q Consensus 617 ~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 696 (968)
++|..+.. ..+++.|+.++.+++ ++..|+.+|..+. ....++.|..++....+
T Consensus 214 ~aL~~~~~-------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~------------~~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 214 IGLSYRKD-------------KRVLSVLCDELKKNT--VYDDIIEAAGELG------------DKTLLPVLDTMLYKFDD 266 (280)
T ss_dssp HHHHHTTC-------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC------------CGGGHHHHHHHHTTSSC
T ss_pred HHHHHhCC-------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC------------chhhhHHHHHHHhcCCC
Confidence 99988751 247899999997654 8899999999985 23578999999987767
Q ss_pred HHHHHHHHHHHhc
Q 002091 697 EEEIASAMGILSK 709 (968)
Q Consensus 697 ~~~~~~Al~~L~n 709 (968)
.++...++..|.+
T Consensus 267 ~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 267 NEIITSAIDKLKR 279 (280)
T ss_dssp CHHHHHHHHHHTC
T ss_pred cHHHHHHHHHhhc
Confidence 6777777776654
No 64
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=123.94 Aligned_cols=68 Identities=15% Similarity=0.316 Sum_probs=63.0
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC-CCCccCHhHHHHHHHHHhh
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT-SILRPNKTLRQSIEEWKDR 331 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~-~~l~pn~~l~~~I~~w~~~ 331 (968)
++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..++++++.|.-.
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 6899999999999999999999999999999998767799999999976 7899999999999999743
No 65
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=125.16 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=63.2
Q ss_pred CCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC-CCccCHhHHHHHHHHHh
Q 002091 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS-ILRPNKTLRQSIEEWKD 330 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~-~l~pn~~l~~~I~~w~~ 330 (968)
+++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.+|..++++++.|..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999999999999987777999999999766 89999999999999974
No 66
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.31 E-value=3.8e-10 Score=135.32 Aligned_cols=447 Identities=14% Similarity=0.129 Sum_probs=291.4
Q ss_pred HHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHh
Q 002091 382 VESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAK 460 (968)
Q Consensus 382 v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~ 460 (968)
+..+.+-|.+ ++..+..|+..|..+.. ++ +. ...++.+..+|.+.++.++..|+.++.++....+. ++
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~--~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v- 177 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC--RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM- 177 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-
Confidence 3445555543 45567778888887753 22 22 25578888899999999999999999999743221 11
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchh-hHHHhhcCchHHHHHhhhc---------------CCHHHHHHHH
Q 002091 461 ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHH-KASLLEGNVLGPLLHLVSR---------------GDIQMKKVAV 524 (968)
Q Consensus 461 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~a~ 524 (968)
.+.++.+..+|.+.++.++..|+.+|..+...+.. ...+ ...++.|+++|++ .++-.+...+
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRIL 255 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHH
Confidence 25677788889888999999999999999765422 1111 3578888887764 3788899999
Q ss_pred HHHHHhcCCCccHHHHHHcCChHHHHHHhccc---CCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHH
Q 002091 525 KALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH---SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLF 601 (968)
Q Consensus 525 ~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~ 601 (968)
.+|..++..... ......+.|..++... ......+...|+.++..+...+. +. ..++..+.
T Consensus 256 ~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~----------l~--~~a~~~L~ 319 (618)
T 1w63_A 256 RLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESG----------LR--VLAINILG 319 (618)
T ss_dssp HHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHH----------HH--HHHHHHHH
T ss_pred HHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHH----------HH--HHHHHHHH
Confidence 999999864321 1123555666665421 11114577888888888753211 11 24677888
Q ss_pred HhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhcc
Q 002091 602 SLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQ 681 (968)
Q Consensus 602 ~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~ 681 (968)
.++.+.++.++..++.+|..++.. .+ ..+. .....++..+.+++..++..|+.+|..++ +..+ . .
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~--~p---~~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~-~~~n--v-----~ 384 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQT--DH---NAVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALV-NGNN--I-----R 384 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHH--HH---HHHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHC-CSSS--T-----H
T ss_pred HHHhCCCCchHHHHHHHHHHHHhh--CH---HHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHc-cccc--H-----H
Confidence 889889999999999999998742 11 1222 24667888889999999999999999998 3222 1 1
Q ss_pred ccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCC
Q 002091 682 KCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP 760 (968)
Q Consensus 682 ~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~ 760 (968)
..+..|...+.. .+.+++..++..|+.++. .+....+. ++.+++++... ...++..++..+..+...
T Consensus 385 ~iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~ll~lL~~~------~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 385 GMMKELLYFLDS-CEPEFKADCASGIFLAAEKYAPSKRWH-----IDTIMRVLTTA------GSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHHHHHHHHT------GGGSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHhc------cchhHHHHHHHHHHHHhc
Confidence 245777777776 577899999999999987 33333333 67888888873 233444555555555544
Q ss_pred CCHHHHHHHHHcCChHHHHHHhhc--CChHHHHHHHHHHhhhcccCCC--CCCCCCCCCcccccCCCCCcccccCCCccC
Q 002091 761 TNLEWQKRAAEAGVIPKLVQLLEY--GTTLTKEHAATSLARFSKNSLG--LSRPIPKRKGFWCFSPPPEIGCQVHGGLCG 836 (968)
Q Consensus 761 ~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~nl~~~s~~--l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~ 836 (968)
+++.+..+ ++.|+.++.+ ....+...++|.|+.++..-.+ +..
T Consensus 453 -~p~l~~~~-----v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~--------------------------- 499 (618)
T 1w63_A 453 -SVEMHAYT-----VQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEE--------------------------- 499 (618)
T ss_dssp -SCSTHHHH-----HHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSS---------------------------
T ss_pred -ChhHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccc---------------------------
Confidence 44444433 5568888875 2345556799999999742111 000
Q ss_pred cccchHHhhcCChHHHHhhcc--CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHH
Q 002091 837 IESSFCLLEANAVRPLVRVLE--DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALD 913 (968)
Q Consensus 837 ~~~~~~l~~~g~i~~Lv~lL~--~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~ 913 (968)
+.-+..-...+++.|..++. ..++.++..++.|+..+. ... +.... ....|.....+.|++||++|..
T Consensus 500 -~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~---~~~~~-----l~~~L~~~~~~~d~evrdRA~~ 570 (618)
T 1w63_A 500 -EEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT---CTVNR-----IKKVVSIYGSSIDVELQQRAVE 570 (618)
T ss_dssp -SCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS---SCHHH-----HHHHHHHHTTCSCHHHHHHHHH
T ss_pred -ccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc---chHHH-----HHHHHHHhcCCCCHHHHHHHHH
Confidence 00000011234566666665 467889999999999998 221 11111 1222444457889999999999
Q ss_pred HHHHHhcChhhHH
Q 002091 914 SVERIFRLPEFKQ 926 (968)
Q Consensus 914 ~L~~l~~~~~~~~ 926 (968)
.+.-+...++.+.
T Consensus 571 y~~ll~~~~~~~~ 583 (618)
T 1w63_A 571 YNALFKKYDHMRS 583 (618)
T ss_dssp HHHHHHTTTTHHH
T ss_pred HHHHHcCcHHHHH
Confidence 8776655555443
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.27 E-value=1.1e-09 Score=142.69 Aligned_cols=474 Identities=16% Similarity=0.119 Sum_probs=296.2
Q ss_pred hhHHHHHHhhcc-ChHHHHHHHHHHHHhccC-hhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhH--
Q 002091 380 DAVESIVRSLGR-RIEERKLAVALLLELSTC-NTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNV-- 455 (968)
Q Consensus 380 ~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~-- 455 (968)
..++.+.+.|.+ ++..+..|+..|..++.. +. ..+ ...++.|+..+.+++..+|..|+.+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~---~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 445666776654 567788899999988762 22 111 245677888888888889999999998886321110
Q ss_pred ----HHHHhCCchHHHHHHHh-cCCHHHHHHHHHHHHHhccC--chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHH
Q 002091 456 ----VQMAKANYFKHLLQRLS-AGPESVKMRMATTLAEMELT--DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALR 528 (968)
Q Consensus 456 ----~~i~~~g~v~~Lv~~L~-~~~~~~~~~aa~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 528 (968)
..-.-...++.|+..+. +.++.++..|+.+|..+... +.... .-...++.|+..+.+.++.+|..|+.+|.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00112345788888888 47889999999999988531 11100 11456788888998889999999999999
Q ss_pred HhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCC
Q 002091 529 NLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTG 608 (968)
Q Consensus 529 ~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~ 608 (968)
.++...+.. + -...++.++..|.+... ..++..++.++..++..... .. .-.-...++.++..+...+
T Consensus 201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~--~~~r~~a~~~l~~l~~~~~~-~~------~~~l~~l~~~ll~~l~d~~ 268 (1230)
T 1u6g_C 201 HLVMSCGNI--V-FVDLIEHLLSELSKNDS--MSTTRTYIQCIAAISRQAGH-RI------GEYLEKIIPLVVKFCNVDD 268 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCS--SCSCTTHHHHHHHHHHHSSG-GG------TTSCTTHHHHHHHHHSSCC
T ss_pred HHHHhcCHH--H-HHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHhHH-HH------HHHHHHHHHHHHHHhcCCC
Confidence 998643322 1 12457888888876532 35677788888888763211 10 0012467888999998888
Q ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC-------------------------------------
Q 002091 609 PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD------------------------------------- 651 (968)
Q Consensus 609 ~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~------------------------------------- 651 (968)
+.++..++.++..++..-. .++...+. ..++.++..+..+
T Consensus 269 ~~vR~~a~~~l~~l~~~~~-~~~~~~l~--~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 345 (1230)
T 1u6g_C 269 DELREYCIQAFESFVRRCP-KEVYPHVS--TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345 (1230)
T ss_dssp TTTHHHHHHHHHHHHHCTT-CCCHHHHH--HHHHHHTTCCCCC------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHCh-HHHHHhHH--HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccccccc
Confidence 9999999999888875421 11122221 2345554444210
Q ss_pred ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC--CH---------------
Q 002091 652 NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--VP--------------- 714 (968)
Q Consensus 652 ~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~--~~--------------- 714 (968)
...+|..|+.+|..++.. .++....++ ...++.|+..+.. .+..++..++.++..+.. ..
T Consensus 346 ~~~vR~~A~~~l~~l~~~-~~~~~~~~~-~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 422 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVST-RHEMLPEFY-KTVSPALISRFKE-REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGE 422 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTT-CCTTHHHHH-TTTHHHHHSTTSC-SSSHHHHHHHHHHHHHHHHHCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHh-chhHHHHHH-HHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhccccccccCcccccccc
Confidence 124688888999888732 222222332 2456667666654 345788888887765543 10
Q ss_pred HhHHHH--HHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCCh--HHH
Q 002091 715 QFTQWL--LDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTT--LTK 790 (968)
Q Consensus 715 ~~~~~l--~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--~v~ 790 (968)
.....+ .-...++.+...+++ .+..++..++.+|..++.......... -..+++.+...|.+.++ .++
T Consensus 423 ~~~~~~~~~l~~ll~~l~~~l~~------~~~~vr~~~~~~L~~l~~~~~~~l~~~--l~~ll~~l~~~L~d~~~~~~v~ 494 (1230)
T 1u6g_C 423 TPLTMLQSQVPNIVKALHKQMKE------KSVKTRQCCFNMLTELVNVLPGALTQH--IPVLVPGIIFSLNDKSSSSNLK 494 (1230)
T ss_dssp CHHHHHHHHTTHHHHHHHHHTTC------SCHHHHHHHHHHHHHHHHHSTTTTGGG--HHHHHHHHHHHTTCSSSCHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHhcc------CCHHHHHHHHHHHHHHHHHchhhhHHH--HHHHHHHHHHHHcCCCCcchHH
Confidence 000111 112244556666776 567788899999998876421111111 13457888888887654 899
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHH
Q 002091 791 EHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDA 870 (968)
Q Consensus 791 ~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~a 870 (968)
..++..+..+....+ + ..+.-.-...++.|+..+.+.+..++..++.+
T Consensus 495 ~~a~~~l~~~~~~~~-------------------------------~-~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~ 542 (1230)
T 1u6g_C 495 IDALSCLYVILCNHS-------------------------------P-QVFHPHVQALVPPVVACVGDPFYKITSEALLV 542 (1230)
T ss_dssp HHHHHHHHHHHHSSC-------------------------------G-GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-------------------------------H-HHHHhHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 999999988863211 1 11111224588899999998888888888888
Q ss_pred HHhhh-c-cc---cc-chhhHHHHhcCcHHHHHHHh--cCCChHHHHHHHHHHHHHhc
Q 002091 871 LVTLI-E-GE---RL-QNGSKVLEDANAIDRMVRFL--SSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 871 L~~L~-~-~~---~~-~~~~~~i~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~ 920 (968)
+..++ . +. .. ...... -...++.++..+ .+.++.+++.|..++..+..
T Consensus 543 l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~ 598 (1230)
T 1u6g_C 543 TQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADIDQEVKERAISCMGQIIC 598 (1230)
T ss_dssp HHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 88887 2 21 00 011111 123466777777 66788999999999988864
No 68
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.27 E-value=9.1e-11 Score=135.79 Aligned_cols=384 Identities=12% Similarity=0.115 Sum_probs=249.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC--CHHHHHHHHHHHHHhcCCCc-cHHH----
Q 002091 467 LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSSVPQ-NGLQ---- 539 (968)
Q Consensus 467 Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~~-~~~~---- 539 (968)
++..+.+++...|..|-..|..+...+ ..+.+..|+.++.+. ++.+|..|+..|.|+..... ....
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 444445667888988888887653210 245677888888765 68999999999999975321 0000
Q ss_pred -------HHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccC--CHH
Q 002091 540 -------MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT--GPN 610 (968)
Q Consensus 540 -------i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~--~~~ 610 (968)
-....+-..|+..|.+.+ +.+ ..++.+++.++....... .-.+.++.++..+.+. ++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~---~~v-~~~~~~i~~ia~~~~~~~---------~w~~ll~~L~~~l~~~~~~~~ 145 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTET---YRP-SSASQCVAGIACAEIPVN---------QWPELIPQLVANVTNPNSTEH 145 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCC---SSS-CSHHHHHHHHHHHHGGGT---------CCTTHHHHHHHHHHCTTCCHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCC---chh-hHHHHHHHHHHHHhcccc---------ccHHHHHHHHHHhccCCCCHH
Confidence 011123345677776654 566 778888888886431110 1146889999999888 899
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHH-HhhccccHHHH
Q 002091 611 VQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIR-EHVGQKCLETL 687 (968)
Q Consensus 611 ~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~-~~~~~~~i~~L 687 (968)
+++.++.+|..++....+......+ ...++.++..+.+. +..+|..|++++.++... ...... .....-.++.|
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~~l 222 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF-TKANFDKESERHFIMQVV 222 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT-THHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHH
Confidence 9999999999998532121111111 13577788888887 789999999999997622 111110 00011134555
Q ss_pred HHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHH
Q 002091 688 VTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ 766 (968)
Q Consensus 688 v~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~ 766 (968)
...+.+ .+.+++..++.+|..++. .+..-...+..++++.++..+.+ .+..++..++..+..++.. ....
T Consensus 223 ~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~v~~~a~~~l~~~~~~--~~~~ 293 (462)
T 1ibr_B 223 CEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS------DIDEVALQGIEFWSNVCDE--EMDL 293 (462)
T ss_dssp HHHTTC-SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC------SSHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CchHHHHHHHHHHHHHHHH--HHHH
Confidence 555544 577899999999988876 33221111111556777777776 5678999999988888752 1000
Q ss_pred HH------------------HH---HcCChHHHHHHhhcC-------ChHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 002091 767 KR------------------AA---EAGVIPKLVQLLEYG-------TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFW 818 (968)
Q Consensus 767 ~~------------------~~---~~g~i~~Lv~lL~~~-------~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~ 818 (968)
.. +. -..++|.++..+... +..++..|+.+|..++..-+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~------------- 360 (462)
T 1ibr_B 294 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE------------- 360 (462)
T ss_dssp HHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-------------
T ss_pred HHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-------------
Confidence 00 00 133567777777532 34789999999999984221
Q ss_pred ccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHH
Q 002091 819 CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVR 898 (968)
Q Consensus 819 ~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ 898 (968)
+ . +-..+++.+...|.+.++.++++++.+|..++.+...+.....+ ...++.+..
T Consensus 361 -------------------~---~-~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~ 415 (462)
T 1ibr_B 361 -------------------D---D-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIE 415 (462)
T ss_dssp -------------------T---T-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHH
T ss_pred -------------------H---H-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHH
Confidence 0 0 11235677777888899999999999999999322111111111 467899999
Q ss_pred HhcCCChHHHHHHHHHHHHHhc
Q 002091 899 FLSSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 899 ll~~~~~~v~~~a~~~L~~l~~ 920 (968)
++.++++.|+..|+++|.++..
T Consensus 416 ~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 416 LMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.26 E-value=1.3e-10 Score=151.69 Aligned_cols=514 Identities=13% Similarity=0.125 Sum_probs=309.0
Q ss_pred HHHHHHhh-ccChHHHHHHHHHHHHhccChhHH-HHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHH
Q 002091 382 VESIVRSL-GRRIEERKLAVALLLELSTCNTLR-DQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMA 459 (968)
Q Consensus 382 v~~lv~~L-~~~~~~~~~A~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~ 459 (968)
+..+...+ +.+.+.+..|...|....+.+... ..-.. ...++.|+..|.+.+..+|..|+.+|.+++..-... .+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~- 84 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QV- 84 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HH-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HH-
Confidence 44455544 456778888888887664422110 00001 245778888888899999999999999987432221 11
Q ss_pred hCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhh------HHHhhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcC
Q 002091 460 KANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHK------ASLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 460 ~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~ 532 (968)
...++.++..|.++++.+|..|+.+|..++..-... ..-.....+|.|+..+. ++++.++..|+.+|..++.
T Consensus 85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 123566777777778888999999988874321110 11112467899999998 5789999999999999983
Q ss_pred C-Cc-cHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccC-CH
Q 002091 533 V-PQ-NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT-GP 609 (968)
Q Consensus 533 ~-~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~-~~ 609 (968)
. .. .... -...++.|+..|.+.+ ..++..|+.+|..++...... . ....++.++..+... ++
T Consensus 164 ~~~~~l~~~--~~~ll~~l~~~L~~~~---~~vR~~a~~al~~l~~~~~~~--------~--~~~~l~~l~~~L~~~~~~ 228 (1230)
T 1u6g_C 164 RQGGLLVNF--HPSILTCLLPQLTSPR---LAVRKRTIIALGHLVMSCGNI--------V--FVDLIEHLLSELSKNDSM 228 (1230)
T ss_dssp HTCSSCTTT--HHHHHHHHGGGGGCSS---HHHHHHHHHHHHHHTTTC--------------CTTHHHHHHHHHHHTCSS
T ss_pred HhHhHHHHH--HHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHhcCHH--------H--HHHHHHHHHHHhccCCch
Confidence 1 11 1110 1224566666676544 789999999999998643211 1 234567776666533 23
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHH
Q 002091 610 NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVT 689 (968)
Q Consensus 610 ~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~ 689 (968)
..+..++.++..++... +..+...+ ...++.++..+.+.++.+|..++.++..++....... ..++ ...++.++.
T Consensus 229 ~~r~~a~~~l~~l~~~~-~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~l-~~li~~ll~ 303 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQA-GHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHV-STIINICLK 303 (1230)
T ss_dssp CSCTTHHHHHHHHHHHS-SGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHH-HHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHh-HHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH-HHhH-HHHHHHHHH
Confidence 45566777777776431 11111111 2468888899988889999999999988874332211 1111 123333333
Q ss_pred HhccC------------------------------------CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHH
Q 002091 690 IIQSS------------------------------------HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNF 732 (968)
Q Consensus 690 lL~~~------------------------------------~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~l 732 (968)
.+... ....++..|+.+|..++. .++..... -...++.++..
T Consensus 304 ~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~ 382 (1230)
T 1u6g_C 304 YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISR 382 (1230)
T ss_dssp CCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHST
T ss_pred HhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHH
Confidence 33210 012356777777777665 22211111 13456666666
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhhccCCCCH---------------HHHHHHH--HcCChHHHHHHhhcCChHHHHHHHH
Q 002091 733 LKNGRQNDPNRFQVVENAVGALRRFTAPTNL---------------EWQKRAA--EAGVIPKLVQLLEYGTTLTKEHAAT 795 (968)
Q Consensus 733 L~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~---------------~~~~~~~--~~g~i~~Lv~lL~~~~~~v~~~Aa~ 795 (968)
+.+ .+..+|..++.++..+...... .....+. -..+++.+...+++.++.+|..++.
T Consensus 383 l~d------~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~ 456 (1230)
T 1u6g_C 383 FKE------REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN 456 (1230)
T ss_dssp TSC------SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred cCC------CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHH
Confidence 655 4577888888887766542000 0011111 1234566666688889999999999
Q ss_pred HHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCCh--hhhHHHHHHHHh
Q 002091 796 SLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH--GACEASLDALVT 873 (968)
Q Consensus 796 aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~--~v~~~al~aL~~ 873 (968)
+|+.+....+.. .. . .-...++.++.+|.+.++ .++..++.++..
T Consensus 457 ~L~~l~~~~~~~-----------------------------l~--~--~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 457 MLTELVNVLPGA-----------------------------LT--Q--HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHHHHHSTTT-----------------------------TG--G--GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHchhh-----------------------------hH--H--HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 999988532110 00 0 012467888888887764 788889999988
Q ss_pred hhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcC-hh-------hHHHhcccCCchhhhhc--ccC
Q 002091 874 LIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL-PE-------FKQKYGKSAQMPLVDLT--QRG 943 (968)
Q Consensus 874 L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~-------~~~~~~~~~~~~Lv~ll--~~~ 943 (968)
+......+.....+ ...++.+...+.+.+..++..+++++..+... ++ .-..|.....+.++..+ .+.
T Consensus 504 ~~~~~~~~~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 504 ILCNHSPQVFHPHV--QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI 581 (1230)
T ss_dssp HHHSSCGGGGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHhCCHHHHHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCC
Confidence 87211111121122 35688888888888898988888888877521 00 00111112234466667 567
Q ss_pred CchhhHHHHHHHHHHhhc
Q 002091 944 NSSMKSLSARVLAHLNVL 961 (968)
Q Consensus 944 ~~~~~~~A~~aL~~L~~~ 961 (968)
+..+|..|..+|..|-..
T Consensus 582 ~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICN 599 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 788999998888877543
No 70
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.24 E-value=4.8e-10 Score=140.93 Aligned_cols=425 Identities=12% Similarity=0.119 Sum_probs=272.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC--CHHHHHHHHHHHHHhcCCC-ccHHHHH--
Q 002091 467 LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSSVP-QNGLQMI-- 541 (968)
Q Consensus 467 Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~-- 541 (968)
++..+.+++.++|..|...|..+... -..+++..|+.++.+. ++.+|..|+.+|.+..... +.+....
T Consensus 6 ~L~~~~s~d~~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (876)
T 1qgr_A 6 ILEKTVSPDRLELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (876)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHh
Confidence 34445567888999999999776321 0146778888988774 5889999999999975422 2111110
Q ss_pred ---------HcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccC--CHH
Q 002091 542 ---------KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT--GPN 610 (968)
Q Consensus 542 ---------~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~--~~~ 610 (968)
....-+.|++.|.+.+ +.+ ..++.++..++....... .-...++.++..+.+. ++.
T Consensus 79 ~w~~l~~~~~~~ik~~ll~~l~~~~---~~~-~~~~~~l~~i~~~~~~~~---------~w~~ll~~l~~~l~~~~~~~~ 145 (876)
T 1qgr_A 79 RWLAIDANARREVKNYVLHTLGTET---YRP-SSASQCVAGIACAEIPVN---------QWPELIPQLVANVTNPNSTEH 145 (876)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTTCC---SSS-CHHHHHHHHHHHHHGGGT---------CCTTHHHHHHHHHHCTTCCHH
T ss_pred hhccCCHHHHHHHHHHHHHHhCCCc---HHH-HHHHHHHHHHHHhhCccc---------ccHHHHHHHHHHHhCCCCCHH
Confidence 1112233777776544 556 778888888876421101 1246788899999888 899
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHH
Q 002091 611 VQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLV 688 (968)
Q Consensus 611 ~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv 688 (968)
++..++.+|..++..-.+..+...+ ...++.+...+.++ +..++..|+++|..+.................++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHhhHHhHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999998532222111111 23566677777776 6889999999999987321111000000112456666
Q ss_pred HHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHH---
Q 002091 689 TIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE--- 764 (968)
Q Consensus 689 ~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~--- 764 (968)
..+.. .+.+++..++.+|..+.. ........+...+++.+...+.+ .+..++..++..+..++.. ...
T Consensus 224 ~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~v~~~al~~l~~l~~~-~~~~~~ 295 (876)
T 1qgr_A 224 EATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS------DIDEVALQGIEFWSNVCDE-EMDLAI 295 (876)
T ss_dssp HHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHH-HHhHhh
Confidence 66654 567899999999999887 44433333334667777777766 5678899999888888752 100
Q ss_pred ------------------HHHHHHHcCChHHHHHHhhc-------CChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 002091 765 ------------------WQKRAAEAGVIPKLVQLLEY-------GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWC 819 (968)
Q Consensus 765 ------------------~~~~~~~~g~i~~Lv~lL~~-------~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~ 819 (968)
..+.. -..++|.++..+.. .+..+|..|+.+|..++..-+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-------------- 360 (876)
T 1qgr_A 296 EASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-------------- 360 (876)
T ss_dssp HHHHHHHHSSCCSSCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--------------
T ss_pred hhccccccCCCccchhHHHHHHH-HHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--------------
Confidence 00000 02346777777752 345789999999999873110
Q ss_pred cCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHH
Q 002091 820 FSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRF 899 (968)
Q Consensus 820 ~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~l 899 (968)
+. + -..+++.+...+.+.++.+|+.++.+|..++.+...+..... -.+.++.+...
T Consensus 361 ------------------~~---~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~--~~~~l~~l~~~ 416 (876)
T 1qgr_A 361 ------------------DD---I-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL--VIQAMPTLIEL 416 (876)
T ss_dssp ------------------GG---G-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH--HHHHHHHHHHH
T ss_pred ------------------Hh---h-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHHHHH
Confidence 00 1 123566677788888999999999999999832111111111 23468889999
Q ss_pred hcCCChHHHHHHHHHHHHHhcChhh---HHHhcccCCchhhhhcccCCchhhHHHHHHHHHHhhc
Q 002091 900 LSSPSPKLQEKALDSVERIFRLPEF---KQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVL 961 (968)
Q Consensus 900 l~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~ 961 (968)
+.++++.++..|++++.++...-.- ...+-......|+..+.+. +.++..|+++|..+...
T Consensus 417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999743110 0111111234566777664 88899999999988754
No 71
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.22 E-value=5.7e-12 Score=111.95 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=62.9
Q ss_pred CcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhc
Q 002091 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRN 332 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 332 (968)
+++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|+.++....+.+|..++++|+.|....
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 679999999999999998 89999999999999974 579999999998888999999999999998655
No 72
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.20 E-value=6.5e-11 Score=137.02 Aligned_cols=386 Identities=12% Similarity=0.134 Sum_probs=246.4
Q ss_pred HHHhhccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCC--CHHHHHHHHHHHHhccCCc-hhH------
Q 002091 385 IVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSD--DNQASRDAQELLENLSFSD-DNV------ 455 (968)
Q Consensus 385 lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~--~~~~~~~a~~~L~~Ls~~~-~n~------ 455 (968)
+-..++.+.+.+..|-..|..+.++ +..+.+..|+.++.+. +..+|..|+..|.|+.... ...
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 4445566777888888888776431 0146677777777653 7899999999999985322 100
Q ss_pred --HHH---HhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC--CHHHHHHHHHHHH
Q 002091 456 --VQM---AKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALR 528 (968)
Q Consensus 456 --~~i---~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~ 528 (968)
..+ .....-..|+..|.+.++.+ ..++.++..++..+.... .-.+.++.|+..+.++ ++..+..|+.+|.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 000 01112234666777776666 778888888764321110 1267899999999998 8999999999999
Q ss_pred HhcC-C-CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhcc
Q 002091 529 NLSS-V-PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL 606 (968)
Q Consensus 529 ~Ls~-~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~ 606 (968)
.++. . ++.-.... ..+++.++..|.+... +..++..|+.++.++...-..... .. ......++.+...+.+
T Consensus 156 ~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~-~~~vr~~a~~~l~~~~~~~~~~~~----~~-~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 156 YICQDIDPEQLQDKS-NEILTAIIQGMRKEEP-SNNVKLAATNALLNSLEFTKANFD----KE-SERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHTTTTHHHHT----SH-HHHHHHHHHHHHHTTC
T ss_pred HHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHhhh----hh-HHHHHHHHHHHHhcCC
Confidence 9984 2 21111111 2366778888876521 278999999999997642110000 00 0012235666667778
Q ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCCh--------------
Q 002091 607 TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDE-------------- 672 (968)
Q Consensus 607 ~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~-------------- 672 (968)
.++.++..++++|..++... ...+...+.. +.++.++..+.+.++.++..|+..+..++.....
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~-~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLY-YQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHC-GGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 89999999999999987431 1111111111 4567777778888899999999998888722100
Q ss_pred --hHHHHhh---ccccHHHHHHHhccC------CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCC
Q 002091 673 --AIIREHV---GQKCLETLVTIIQSS------HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQND 740 (968)
Q Consensus 673 --~~~~~~~---~~~~i~~Lv~lL~~~------~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~ 740 (968)
.....+. -...++.+++.+... .+..++..|..+|..|+. -.+ .+. ..+++.+...+.+
T Consensus 307 ~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~----- 377 (462)
T 1ibr_B 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKN----- 377 (462)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTC-----
T ss_pred ccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcC-----
Confidence 0000000 123456666666432 233578888888888876 221 111 2345666677766
Q ss_pred CchhHHHHHHHHHHhhccCCCCHH-HHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 741 PNRFQVVENAVGALRRFTAPTNLE-WQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 741 ~~~~~v~e~a~~aL~~L~~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
.+..+|+.++.+|+.++.+..++ ....+ ..++|.++..+.+.++.+|..|+++|++++.
T Consensus 378 -~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 378 -PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp -SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 57889999999999999863322 11111 5678999999999999999999999999985
No 73
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.17 E-value=1e-11 Score=110.16 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=61.7
Q ss_pred CcccccccccCCCCcee-cCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhh
Q 002091 264 QSFYCPITRDVMVDPVE-TSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDR 331 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~ 331 (968)
++|.||||++.|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+.+|..+.+.+++...-
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 68999999999999999 999999999999999987668999999999989999999888888776543
No 74
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.17 E-value=1.4e-11 Score=111.32 Aligned_cols=67 Identities=15% Similarity=0.371 Sum_probs=60.5
Q ss_pred CCcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC----CCccCHhHHHHHHHHHh
Q 002091 263 LQSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS----ILRPNKTLRQSIEEWKD 330 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~----~l~pn~~l~~~I~~w~~ 330 (968)
.+++.||||+++|.|||++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..++++++.|..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 4789999999999999998 99999999999999975 47999999999765 78899999999998864
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.15 E-value=1.4e-09 Score=111.41 Aligned_cols=185 Identities=17% Similarity=0.187 Sum_probs=158.8
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASL 499 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i 499 (968)
.+.++.|+.+|.+++..++..|+..|..+. ..+.++.|+..|.++++.+|..++.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 578999999999999999999999998753 2467899999999999999999999998774
Q ss_pred hhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091 500 LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 579 (968)
Q Consensus 500 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 579 (968)
..+.++.|+.+|+++++.++..|+.+|.++.. .+.++.|+.+|.+.+ +.++..|+.+|+++..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED---WFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHCC---
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCC---
Confidence 34678999999999999999999999999853 357899999997665 7899999999999853
Q ss_pred cccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHH
Q 002091 580 YQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 659 (968)
Q Consensus 580 ~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a 659 (968)
...++.|..++++.++.++..++.+|..+.. ..+++.|..++.++++.++..|
T Consensus 142 --------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A 194 (211)
T 3ltm_A 142 --------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAETGTGFARKVA 194 (211)
T ss_dssp --------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHCCHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCCCHHHHHHH
Confidence 2468889999999999999999999999842 2368889999999999999999
Q ss_pred HHHHHHhc
Q 002091 660 VKLFCCLV 667 (968)
Q Consensus 660 ~~~L~~Ls 667 (968)
..+|.++.
T Consensus 195 ~~aL~~~~ 202 (211)
T 3ltm_A 195 VNYLETHK 202 (211)
T ss_dssp HHHHHC--
T ss_pred HHHHHhcC
Confidence 99999997
No 76
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=2.3e-12 Score=109.37 Aligned_cols=63 Identities=19% Similarity=0.393 Sum_probs=55.9
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcC------CCCCCCCCCcCCCCCCccCHhHHHH
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDG------NNLCPLTMTVLDTSILRPNKTLRQS 324 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~------~~~CP~t~~~l~~~~l~pn~~l~~~ 324 (968)
..+++.||||++.|.|||+++|||+||+.||.+|+... ...||.|++++....+.+|..++++
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 45789999999999999999999999999999999753 6789999999988888999877544
No 77
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.14 E-value=9.5e-12 Score=113.89 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=61.7
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC-------CCCccCHhHHHHHHHHHh
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT-------SILRPNKTLRQSIEEWKD 330 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~-------~~l~pn~~l~~~I~~w~~ 330 (968)
..++|.||||+++|.+||+++|||+||+.||.+|+..+...||.|++.+.. ..+.+|..+.+.|++|..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 447899999999999999999999999999999998778899999999853 667789999999999863
No 78
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=1.5e-11 Score=112.80 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=61.6
Q ss_pred CcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhc
Q 002091 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRN 332 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 332 (968)
++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++....+.+|..++++++.|....
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 679999999999999999 9999999999999986 78999999998889999999999999997654
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.13 E-value=6.9e-08 Score=115.28 Aligned_cols=331 Identities=14% Similarity=0.137 Sum_probs=228.6
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh
Q 002091 421 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 500 (968)
Q Consensus 421 g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~ 500 (968)
.+.+..+.++.+++...+.-+...+..++..++....+ .+..+.+-|.++++..+..|+.+|.++... + +.
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-e----~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASRNPTFMGLALHCIANVGSR-E----MA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-H----HH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-H----HH
Confidence 45667778889999999998888888887655443333 245566678888999999999999998542 2 21
Q ss_pred hcCchHHHHHhh--hcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcC
Q 002091 501 EGNVLGPLLHLV--SRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 577 (968)
Q Consensus 501 ~~g~i~~Lv~lL--~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 577 (968)
...++.+.++| .+.++.+|+.|+-++.++.. +++.. -..+.++.+.++|.+.+ +.++..|+.+|..++..
T Consensus 145 -~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d---~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 145 -EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQH---LGVVTAATSLITTLAQK 217 (621)
T ss_dssp -HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSC---HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCC---ccHHHHHHHHHHHHHHh
Confidence 24678888999 78899999999999999985 33321 12478999999997655 78999999999999863
Q ss_pred cccccCCCCccccccchhHHHHHHHhhccC-------------CHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHH
Q 002091 578 TMYQESSQTPVTLLESDKEIFMLFSLINLT-------------GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVL 644 (968)
Q Consensus 578 ~~~~~~~~~~~~il~~~~~i~~l~~ll~~~-------------~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~L 644 (968)
....-. --....+..+..++..+ +|..|..+++.|..++...+ .+.+..+.+ .+..+
T Consensus 218 ~~~~~~-------~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d-~~~~~~l~~--~L~~i 287 (621)
T 2vgl_A 218 NPEEFK-------TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED-PAVRGRLTE--CLETI 287 (621)
T ss_dssp CHHHHT-------THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS-HHHHHHHHH--HHHHH
T ss_pred ChHHHH-------HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC-HHHHHHHHH--HHHHH
Confidence 311000 00111223333333221 68999999999998875322 233333322 23334
Q ss_pred HHhh---------ccCC--hhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-
Q 002091 645 VQLC---------EHDN--ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE- 712 (968)
Q Consensus 645 v~ll---------~~~~--~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~- 712 (968)
+..+ ++.+ ..+...|++++..+. ..++.. ..++..|..+|.+ ++.+++..|+..|..++.
T Consensus 288 l~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~-----~~~~~~L~~~L~~-~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLL-----VRACNQLGQFLQH-RETNLRYLALESMCTLASS 359 (621)
T ss_dssp HHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHH-----HHHHHHHHHHSSC-SCHHHHHHHHHHHHHHTTC
T ss_pred HHhhccCcccccccccchHHHHHHHHHHHHHhcC--CcHHHH-----HHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhc
Confidence 4322 1122 378888889998885 222221 2467788888875 577899999999999988
Q ss_pred CHHhHHHHHHcCCHHHHHHHhh-cCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHH
Q 002091 713 VPQFTQWLLDAGALPIVLNFLK-NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKE 791 (968)
Q Consensus 713 ~~~~~~~l~~~g~l~~Lv~lL~-~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~ 791 (968)
.+. ...+ ......++..|. + ++..++..++.+|..++. +...+.+ +..|...+...+.+.+.
T Consensus 360 ~~~-~~~~--~~~~~~i~~~L~~d------~d~~Ir~~aL~lL~~l~~---~~Nv~~I-----v~eL~~yl~~~d~~~~~ 422 (621)
T 2vgl_A 360 EFS-HEAV--KTHIETVINALKTE------RDVSVRQRAVDLLYAMCD---RSNAQQI-----VAEMLSYLETADYSIRE 422 (621)
T ss_dssp TTT-HHHH--HTTHHHHHHHHTTC------CCHHHHHHHHHHHHHHCC---HHHHHHH-----HHHHHHHHHHCCHHHHH
T ss_pred cCc-HHHH--HHHHHHHHHHhccC------CCHhHHHHHHHHHHHHcC---hhhHHHH-----HHHHHHHHHhcCHHHHH
Confidence 432 1222 235677788888 6 567899999999999995 4444443 56788888888999999
Q ss_pred HHHHHHhhhcc
Q 002091 792 HAATSLARFSK 802 (968)
Q Consensus 792 ~Aa~aL~nl~~ 802 (968)
.+..+++.++.
T Consensus 423 ~~v~~I~~la~ 433 (621)
T 2vgl_A 423 EIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 80
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=4.3e-11 Score=99.74 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=49.5
Q ss_pred CCCCcccccccccCCCCceecC-CchhhhHHHHHHHHhc-CCCCCCCCCCcC-CCCCCccC
Q 002091 261 EPLQSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSD-GNNLCPLTMTVL-DTSILRPN 318 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~-~~~~CP~t~~~l-~~~~l~pn 318 (968)
..++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||+|++++ .+..+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 3568999999999999999999 9999999999999975 347999999986 44555565
No 81
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.12 E-value=1.8e-11 Score=112.49 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=64.2
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhhc
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRN 332 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 332 (968)
+.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|..+.-.-
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C 85 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC 85 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeEC
Confidence 56899999999999999999999999999999999876679999999998888999999999998875443
No 82
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=1.7e-11 Score=105.71 Aligned_cols=64 Identities=22% Similarity=0.466 Sum_probs=56.7
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhc-----CCCCCCCCCCcCCCCCCccCHhHHHHH
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD-----GNNLCPLTMTVLDTSILRPNKTLRQSI 325 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~-----~~~~CP~t~~~l~~~~l~pn~~l~~~I 325 (968)
..++|.||||++.+.+||+++|||+||+.||.+|+.. +...||.|++++....+.+|..++++|
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 4578999999999999999999999999999999976 367899999999888999998775543
No 83
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.11 E-value=3.7e-09 Score=108.31 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=157.6
Q ss_pred hCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHH
Q 002091 460 KANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQ 539 (968)
Q Consensus 460 ~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 539 (968)
..+.++.|+..|+++++.+|..|+..|..+. ..++++.|+++|.++++.++..|+.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3567899999999999999999999997764 24688999999999999999999999999853
Q ss_pred HHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHH
Q 002091 540 MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTF 619 (968)
Q Consensus 540 i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L 619 (968)
.++++.|+.+|.+.+ +.++..++.+|+.+.. .+.++.++.++++.++.++..++++|
T Consensus 80 ---~~~~~~L~~~l~~~~---~~vr~~a~~aL~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDED---GWVRQSAAVALGQIGD-----------------ERAVEPLIKALKDEDWFVRIAAAFAL 136 (211)
T ss_dssp ---GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHCC-----------------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 357899999998765 7899999999998853 34688999999999999999999999
Q ss_pred HHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHH
Q 002091 620 NALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEE 699 (968)
Q Consensus 620 ~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 699 (968)
..+.. ...++.|..++.++++.++..|+.+|..+. ....++.|..++++ .+..+
T Consensus 137 ~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d-~~~~v 190 (211)
T 3ltm_A 137 GEIGD-------------ERAVEPLIKALKDEDGWVRQSAADALGEIG------------GERVRAAMEKLAET-GTGFA 190 (211)
T ss_dssp HHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------SHHHHHHHHHHHHH-CCHHH
T ss_pred HHcCC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------chhHHHHHHHHHhC-CCHHH
Confidence 98842 247899999999999999999999999995 23467888888886 57789
Q ss_pred HHHHHHHHhcCCC
Q 002091 700 IASAMGILSKLPE 712 (968)
Q Consensus 700 ~~~Al~~L~nL~~ 712 (968)
+..|..+|.++..
T Consensus 191 r~~A~~aL~~~~~ 203 (211)
T 3ltm_A 191 RKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999887
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.10 E-value=2.8e-09 Score=108.28 Aligned_cols=185 Identities=17% Similarity=0.191 Sum_probs=158.6
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASL 499 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i 499 (968)
.+..+.++.+|.++++.++..|+..|..+. ..+.++.|+..|.++++.+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 467889999999999999999999998753 2367899999999999999999999997763
Q ss_pred hhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091 500 LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 579 (968)
Q Consensus 500 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 579 (968)
..++++.|+.+|.++++.++..|+++|.++.. ..+++.|+.+|.+.+ +.++..|+.+|+.+..
T Consensus 74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 74 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED---WFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHTC---
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhCC---
Confidence 34678999999999999999999999999843 347889999997665 7899999999999853
Q ss_pred cccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHH
Q 002091 580 YQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 659 (968)
Q Consensus 580 ~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a 659 (968)
...++.+..++.+.++.++..++++|..+.. . .+++.|..++.++++.++..|
T Consensus 137 --------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----~---------~~~~~L~~~l~d~~~~vr~~A 189 (201)
T 3ltj_A 137 --------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----E---------RVRAAMEKLAETGTGFARKVA 189 (201)
T ss_dssp --------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----H---------HHHHHHHHHHHHCCHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----h---------hHHHHHHHHHhCCCHHHHHHH
Confidence 3468889999999999999999999999831 1 368889999999999999999
Q ss_pred HHHHHHhc
Q 002091 660 VKLFCCLV 667 (968)
Q Consensus 660 ~~~L~~Ls 667 (968)
..+|..+.
T Consensus 190 ~~aL~~l~ 197 (201)
T 3ltj_A 190 VNYLETHK 197 (201)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99999885
No 85
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.1e-11 Score=96.91 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=48.5
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSIL 315 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l 315 (968)
+++++.||||++.+.|||+++|||+||+.||.+|+..+..+||.|++++....+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 467899999999999999999999999999999997667899999999866543
No 86
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=2.8e-11 Score=118.56 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=62.1
Q ss_pred CCCcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcC-CCCCCccCHhHHHHHHHHHhhc
Q 002091 262 PLQSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVL-DTSILRPNKTLRQSIEEWKDRN 332 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l-~~~~l~pn~~l~~~I~~w~~~~ 332 (968)
..+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++ ....+.||..++++|+.|....
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 34688999999999999998 99999999999999987788999999999 4567899999999999996543
No 87
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.08 E-value=2.8e-10 Score=107.52 Aligned_cols=63 Identities=16% Similarity=0.390 Sum_probs=52.9
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHH
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWK 329 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~ 329 (968)
++|.||||.+.|.|||+++|||+||+.||.+|+.. +.+||+|++++... .+|..+...|..+.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 57899999999999999999999999999999964 57899999988543 34666666776665
No 88
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.7e-11 Score=105.77 Aligned_cols=63 Identities=19% Similarity=0.490 Sum_probs=56.4
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhc-----CCCCCCCCCCcCCCCCCccCHhHHHH
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD-----GNNLCPLTMTVLDTSILRPNKTLRQS 324 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~-----~~~~CP~t~~~l~~~~l~pn~~l~~~ 324 (968)
..+++.||||++.+.||++++|||+||+.||.+|+.. +...||.|++++....+.||+.++++
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 4578999999999999999999999999999999865 46799999999998889999877654
No 89
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=5.3e-11 Score=108.53 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=60.7
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhc--CCCCCCCCCCcCCCCCCccCHhHHHHHHHHHhh
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD--GNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDR 331 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~--~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~~~ 331 (968)
+++.||||++.+.|||+++|||+||+.||.+|+.. +..+||.|+.++....+.+|..+...++.+...
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999974 346899999999999999999888888887653
No 90
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.8e-11 Score=100.62 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=52.3
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHH
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSI 325 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I 325 (968)
...++.||||++.|.|||+++|||+||+.||.+|+.. ..+||+|++++. ..+.+|..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHH
Confidence 3468999999999999999999999999999999965 679999999996 5677885544333
No 91
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.07 E-value=5.4e-09 Score=106.16 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=156.3
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 002091 462 NYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMI 541 (968)
Q Consensus 462 g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 541 (968)
+..+.++..|+++++.+|..|+..|..+. ..+.++.|+++|.++++.++..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 45688999999999999999999998764 24678999999999999999999999998843
Q ss_pred HcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002091 542 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNA 621 (968)
Q Consensus 542 ~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~ 621 (968)
.++++.|+.+|.+.+ +.++..|+.+|+.+.. ...++.++.++++.++.++..++++|..
T Consensus 75 -~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 75 -ERAVEPLIKALKDED---GWVRQSAAVALGQIGD-----------------ERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp -GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHCC-----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 357899999998765 8899999999998753 3468889999999999999999999988
Q ss_pred hccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHH
Q 002091 622 LCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIA 701 (968)
Q Consensus 622 L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~ 701 (968)
+.. ...++.|..++.++++.++..|+.+|..+. ....++.|..++.+ .+..++.
T Consensus 134 ~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~------------~~~~~~~L~~~l~d-~~~~vr~ 187 (201)
T 3ltj_A 134 IGD-------------ERAVEPLIKALKDEDGWVRQSAADALGEIG------------GERVRAAMEKLAET-GTGFARK 187 (201)
T ss_dssp HTC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------SHHHHHHHHHHHHH-CCHHHHH
T ss_pred hCC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------chhHHHHHHHHHhC-CCHHHHH
Confidence 842 247899999999999999999999999995 23467888888877 5778999
Q ss_pred HHHHHHhcCCC
Q 002091 702 SAMGILSKLPE 712 (968)
Q Consensus 702 ~Al~~L~nL~~ 712 (968)
.|..+|.++..
T Consensus 188 ~A~~aL~~l~~ 198 (201)
T 3ltj_A 188 VAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHCC-
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 92
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.9e-10 Score=94.16 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=50.6
Q ss_pred CCCcccccccccCCCCceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCH
Q 002091 262 PLQSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNK 319 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~ 319 (968)
..+++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++....+.+|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccccC
Confidence 45789999999999999997 99999999999999965 67999999999877776653
No 93
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.00 E-value=1.1e-07 Score=113.62 Aligned_cols=471 Identities=14% Similarity=0.137 Sum_probs=289.2
Q ss_pred hHHHHHHhhcc-ChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHH
Q 002091 381 AVESIVRSLGR-RIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQM 458 (968)
Q Consensus 381 ~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i 458 (968)
+...+++.+++ +...++-+.-.+..+++ +++.... ++..+.+-+.++++.++..|+.+|.++.. ++ +
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L------~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e----~ 143 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL------INNAIKNDLASRNPTFMGLALHCIANVGS-RE----M 143 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH------HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH----H
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH------HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HH----H
Confidence 44456666644 44556656556666665 4433222 24566777889999999999999999853 11 2
Q ss_pred HhCCchHHHHHHH--hcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCcc
Q 002091 459 AKANYFKHLLQRL--SAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN 536 (968)
Q Consensus 459 ~~~g~v~~Lv~~L--~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~ 536 (968)
++ ..++.+.+.| .+.++.+|..|+-++.++...+. ..+-..+.++.|.++|.+.++.++.+|+.+|..++....
T Consensus 144 ~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~- 219 (621)
T 2vgl_A 144 AE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP- 219 (621)
T ss_dssp HH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH-
T ss_pred HH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh-
Confidence 22 3567888889 77899999999999999854221 111125899999999999999999999999999975221
Q ss_pred HHHHHHcCChHHHHHHhc----ccCCC----------CcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHH
Q 002091 537 GLQMIKEGAVGPLVDLLL----HHSSS----------SSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFS 602 (968)
Q Consensus 537 ~~~i~~~g~v~~Lv~lL~----~~~~~----------~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ 602 (968)
..+ ...++.+++.|. .+... ++-++...+..|..++..+... ..+.....+-.
T Consensus 220 -~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~----------~~~~l~~~L~~ 286 (621)
T 2vgl_A 220 -EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA----------VRGRLTECLET 286 (621)
T ss_dssp -HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHH----------HHHHHHHHHHH
T ss_pred -HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHH----------HHHHHHHHHHH
Confidence 111 123444444332 21110 1345666666666655321100 01111222222
Q ss_pred hhc------------cCC--HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhcc
Q 002091 603 LIN------------LTG--PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVD 668 (968)
Q Consensus 603 ll~------------~~~--~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~ 668 (968)
+++ +.+ ..+.-.+++++..+.. ..+.. . .++..|..++.+.+++++..|+..|..++.
T Consensus 287 il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~---~~~~~---~--~~~~~L~~~L~~~~~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 287 ILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS---EPNLL---V--RACNQLGQFLQHRETNLRYLALESMCTLAS 358 (621)
T ss_dssp HHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC---CHHHH---H--HHHHHHHHHSSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhhccCcccccccccchHHHHHHHHHHHHHhcCC---cHHHH---H--HHHHHHHHHhcCCCcchHHHHHHHHHHHHh
Confidence 221 112 2566677888888752 22211 1 357788899988899999999999999983
Q ss_pred CCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHH
Q 002091 669 DGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVE 748 (968)
Q Consensus 669 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e 748 (968)
..... ..+ ......++..|..+.+..++..++.+|..++... +.+. ++..|...+.+ .+..++.
T Consensus 359 ~~~~~---~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-Nv~~-----Iv~eL~~yl~~------~d~~~~~ 422 (621)
T 2vgl_A 359 SEFSH---EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS-NAQQ-----IVAEMLSYLET------ADYSIRE 422 (621)
T ss_dssp CTTTH---HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-HHHH-----HHHHHHHHHHH------CCHHHHH
T ss_pred ccCcH---HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-hHHH-----HHHHHHHHHHh------cCHHHHH
Confidence 33211 111 2345677788874567889999999999998632 3332 34567777777 5678899
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCccc
Q 002091 749 NAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGC 828 (968)
Q Consensus 749 ~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c 828 (968)
.++.+++.++....+.. .-.+..|++++..+...+...+...+..+....+.
T Consensus 423 ~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~---------------------- 474 (621)
T 2vgl_A 423 EIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD---------------------- 474 (621)
T ss_dssp HHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS----------------------
T ss_pred HHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh----------------------
Confidence 99999998874311111 12367788888765444555666666666532221
Q ss_pred ccCCCccCcccchHHhhcCChHHHHhhccCCCh--hhhHHHHHHHHhhhcccccchhhHHHHhc------CcHHHHHHHh
Q 002091 829 QVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH--GACEASLDALVTLIEGERLQNGSKVLEDA------NAIDRMVRFL 900 (968)
Q Consensus 829 ~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~--~v~~~al~aL~~L~~~~~~~~~~~~i~~~------~~i~~L~~ll 900 (968)
.+..++..|+..+.+.+. .+...++|.++...+ .+.+. ..++.+.+-.
T Consensus 475 ---------------~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~---------~~~~~~~~~p~~~l~~l~~~~ 530 (621)
T 2vgl_A 475 ---------------VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGN---------LIAGDPRSSPLIQFNLLHSKF 530 (621)
T ss_dssp ---------------CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTH---------HHHSSTTSCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHH---------HhcccCCCCHHHHHHHHHHHh
Confidence 111246677777776543 355566788877751 11111 1233444444
Q ss_pred cCCChHHHHHHHHHHHHHhc-ChhhHHHhcccCCchhhh-hcc--cCCchhhHHHHHHHHHHhh
Q 002091 901 SSPSPKLQEKALDSVERIFR-LPEFKQKYGKSAQMPLVD-LTQ--RGNSSMKSLSARVLAHLNV 960 (968)
Q Consensus 901 ~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~Lv~-ll~--~~~~~~~~~A~~aL~~L~~ 960 (968)
...++.++..++.++.+++. .++.... ...+++ ... +.|.++|++|.-.++-+..
T Consensus 531 ~~~~~~v~~~~Lta~~Kl~~~~p~~~~~-----i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 531 HLCSVPTRALLLSTYIKFVNLFPEVKAT-----IQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHHChHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 67789999999999999864 3332211 122222 333 6889999999888877754
No 94
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.8e-10 Score=93.86 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=47.1
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHh--cCCCCCCCCCCcCCCCC
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS--DGNNLCPLTMTVLDTSI 314 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~--~~~~~CP~t~~~l~~~~ 314 (968)
..+++.||||++.+.|||+++|||+||+.||.+|+. .+...||+|++++....
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 457899999999999999999999999999999997 35678999999886544
No 95
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.96 E-value=9e-11 Score=110.69 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=56.6
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCC---------CCCCccCHhHHHHHHHH
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD---------TSILRPNKTLRQSIEEW 328 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~---------~~~l~pn~~l~~~I~~w 328 (968)
+.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++. ...+.|+..+++.|...
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 55899999999999999999999999999999999877779999998652 22456888887777643
No 96
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.95 E-value=2.1e-10 Score=112.88 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=62.5
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCHhHHHHHHHHH
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWK 329 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~w~ 329 (968)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.++.++....+.||..+++.|..+.
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 56899999999999999999999999999999999876679999999998888999999988888754
No 97
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.95 E-value=2.9e-10 Score=104.16 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=57.4
Q ss_pred CCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCc-cCHhHHHHHHHHH
Q 002091 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILR-PNKTLRQSIEEWK 329 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~-pn~~l~~~I~~w~ 329 (968)
.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+. ++..+.+.+..+.
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence 468999999999999999999999999999999987677999999999776664 5566677776654
No 98
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=2.9e-10 Score=92.10 Aligned_cols=55 Identities=25% Similarity=0.398 Sum_probs=49.3
Q ss_pred Cccccccccc-CCCCc----eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccC
Q 002091 264 QSFYCPITRD-VMVDP----VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 264 ~~~~cpi~~~-~m~dp----v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn 318 (968)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+.++....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999988777899999999988777665
No 99
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.4e-10 Score=89.88 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=40.7
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhc--CCCCCCCC
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD--GNNLCPLT 306 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~--~~~~CP~t 306 (968)
..+++.||||++.+.|||+++|||+||+.||.+|+.. +..+||.|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4578999999999999999999999999999999974 56789986
No 100
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.86 E-value=6.8e-10 Score=91.79 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=50.8
Q ss_pred CCCcccccccccCCCCc-------eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccCH
Q 002091 262 PLQSFYCPITRDVMVDP-------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNK 319 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dp-------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn~ 319 (968)
+.+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.+++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 45789999999999999 89999999999999999975 46999999999888877763
No 101
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.4e-09 Score=88.34 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
..+++.||||++.+.|||+++|||+||+.||.+|+.. +.+||+|++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3478999999999999999999999999999999965 4799999998754
No 102
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.5e-09 Score=84.39 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=40.4
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhc--CCCCCCCC
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD--GNNLCPLT 306 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~--~~~~CP~t 306 (968)
..+++.||||++.+.+||+++|||+||+.||.+|+.. +..+||++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4578999999999999999999999999999999764 56789985
No 103
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=6.4e-09 Score=89.98 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=45.7
Q ss_pred CCCcccccccccCCCC----ceecCCchhhhHHHHHHHHhcC--CCCCCCCCCcCCC
Q 002091 262 PLQSFYCPITRDVMVD----PVETSSGQTFERSAIEKWFSDG--NNLCPLTMTVLDT 312 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~d----pv~~~~g~t~~r~~i~~~~~~~--~~~CP~t~~~l~~ 312 (968)
..+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4578999999999999 9999999999999999999754 5789999998754
No 104
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.71 E-value=2.4e-09 Score=86.42 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=47.9
Q ss_pred CcccccccccCCCCc-------eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccC
Q 002091 264 QSFYCPITRDVMVDP-------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 264 ~~~~cpi~~~~m~dp-------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn 318 (968)
+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468899999999998 88999999999999999976 6799999999987776654
No 105
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=8.8e-09 Score=84.49 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=45.0
Q ss_pred CCCcccccccccCCCCc-------eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 262 PLQSFYCPITRDVMVDP-------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dp-------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
..+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||+|++++.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 45789999999999998 89999999999999999976 6799999998754
No 106
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=1.1e-08 Score=85.14 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=45.4
Q ss_pred CCcccccccccCC--CCceecC--CchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 002091 263 LQSFYCPITRDVM--VDPVETS--SGQTFERSAIEKWFSDGNNLCPLTMTVLDTSIL 315 (968)
Q Consensus 263 ~~~~~cpi~~~~m--~dpv~~~--~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l 315 (968)
.+++.||||++.+ .||++.+ |||+||+.||.+|+..+...||.|++++....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4789999999999 5777776 999999999999987778899999999865443
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.62 E-value=5.4e-08 Score=117.80 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=145.1
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHH-HhcccCCCCcchHHHHHHHHHHhhcCcccc
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVD-LLLHHSSSSSSLREETATAIMHLAVSTMYQ 581 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 581 (968)
..|.++++.|+++++..|..|+.+|.+|+.++.++..+...|+|..++. +|.+.+ .+++..|+++|.||+......
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~---~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNN---IDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSC---HHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCC---HHHHHHHHHHHHHHHhhcCch
Confidence 4567788999999999999999999999998899999999999988765 566554 889999999999998642110
Q ss_pred cCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHH
Q 002091 582 ESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVK 661 (968)
Q Consensus 582 ~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~ 661 (968)
- ...+...++++.|..++.. ....+..+... ... ....--.+ -..+..+++.
T Consensus 111 ~-----~~~l~~~~il~~L~~~l~~--------~~~~~~~~~~~--~~~---------~~~~~~~~----~~~~~~~~l~ 162 (684)
T 4gmo_A 111 F-----CVHLYRLDVLTAIEHAAKA--------VLETLTTSEPP--FSK---------LLKAQQRL----VWDITGSLLV 162 (684)
T ss_dssp H-----HHHHHHTTHHHHHHHHHHH--------HHHHHHCBTTB--GGG---------SCHHHHHH----HHHHHHHHHH
T ss_pred H-----HHHHHHcChHHHHHHHHHh--------hHHHHhhhccc--ccc---------ccHHHHHH----HHHHHHHHHH
Confidence 0 0113334555555555421 11111111100 000 00000000 0134566778
Q ss_pred HHHHhccCCChhHHHHhhccccHHHHHHHhccC--CCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCC
Q 002091 662 LFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS--HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQ 738 (968)
Q Consensus 662 ~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~ 738 (968)
+|++|+ .++++....+...+.++.|+..|.+. ...+++..|+.+|..|+. +++..+.+.+.+....+..++....
T Consensus 163 lL~~L~-e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~- 240 (684)
T 4gmo_A 163 LIGLLA-LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT- 240 (684)
T ss_dssp HHHHHH-HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-
T ss_pred HHHHHH-hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 889998 55667777788889999999988543 357899999999999999 9999999998776433333322100
Q ss_pred CCCchhHHHHHHHHHHhhcc
Q 002091 739 NDPNRFQVVENAVGALRRFT 758 (968)
Q Consensus 739 ~~~~~~~v~e~a~~aL~~L~ 758 (968)
.....+..++++|.|+.
T Consensus 241 ---~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 241 ---GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp ---SSCTTHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHhHh
Confidence 12234667888888874
No 108
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.58 E-value=3.2e-08 Score=83.27 Aligned_cols=55 Identities=18% Similarity=0.384 Sum_probs=47.2
Q ss_pred CCcccccccccCCCCc---eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccC
Q 002091 263 LQSFYCPITRDVMVDP---VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dp---v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn 318 (968)
..++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||+|+.++....+.+|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 4688999999999977 45699999999999999964 5799999999987776665
No 109
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.52 E-value=2e-07 Score=112.76 Aligned_cols=199 Identities=11% Similarity=0.098 Sum_probs=154.7
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHH-HHhhccCChhHHHHHHHHHHHhccCCChhH
Q 002091 596 EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVL-VQLCEHDNENVRANAVKLFCCLVDDGDEAI 674 (968)
Q Consensus 596 ~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~L-v~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~ 674 (968)
.+.+++..+++.++..|..|+++|.+|+. +...+..+...+++..+ ..++.+.+.+++..|+++|+||+..+..+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 34566777899999999999999999995 34556666667777665 567888899999999999999996667778
Q ss_pred HHHhhccccHHHHHHHhccCC-------------C-------HHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHh
Q 002091 675 IREHVGQKCLETLVTIIQSSH-------------N-------EEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFL 733 (968)
Q Consensus 675 ~~~~~~~~~i~~Lv~lL~~~~-------------~-------~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL 733 (968)
+..++..++++.|..+++... . .++...++.+|++|+. +.+....+...++++.++.+|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 888899999999999885320 0 1244567889999998 888888999999999999998
Q ss_pred hcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHh--hcCChHHHHHHHHHHhhhc
Q 002091 734 KNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLL--EYGTTLTKEHAATSLARFS 801 (968)
Q Consensus 734 ~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~v~~~Aa~aL~nl~ 801 (968)
.+... ....++..++.+|..++.. +++..+.+.+.+....+..++ ..++...+..+++.|.|+.
T Consensus 192 ~~~~~---~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADI---APQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCC---SCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HhcCC---CcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 65321 3467999999999999997 888888888877544333333 2344456778889998874
No 110
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=2.6e-08 Score=77.56 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=40.5
Q ss_pred CcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
+++.||||++.+.||++++|||+||+.||.+| ...||.+++.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 68899999999999999999999999999874 5689999988743
No 111
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.47 E-value=6.3e-08 Score=79.01 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=42.4
Q ss_pred CcccccccccCCCCc-eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDP-VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dp-v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
.+..||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999997 78899999999999999965 4799999988854
No 112
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=3.4e-08 Score=81.16 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=45.1
Q ss_pred CCCcccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 002091 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSI 314 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~ 314 (968)
..+++.||||++.+.+ ++++|||+|++.||.+|+. ...+||.|++++....
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 4478999999999999 9999999999999999996 5789999999886543
No 113
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.46 E-value=6.4e-08 Score=75.18 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=41.8
Q ss_pred CcccccccccCCCC----ceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 264 QSFYCPITRDVMVD----PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 264 ~~~~cpi~~~~m~d----pv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
++..||||++.+.+ |++++|||.|++.||.+|+..+ .+||.++.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999977 8889999999999999999765 79999998764
No 114
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.42 E-value=4.8e-08 Score=91.82 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=47.6
Q ss_pred CcccccccccCCCCc-------eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccC
Q 002091 264 QSFYCPITRDVMVDP-------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 264 ~~~~cpi~~~~m~dp-------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn 318 (968)
+++.||||++.|.|| |+++|||+|++.||.+|+.. ..+||++++.+....+.++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 689999999999999 99999999999999999965 4699999999976665443
No 115
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.7e-07 Score=76.60 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=43.8
Q ss_pred CCCcccccccccCCCCceec---CCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 002091 262 PLQSFYCPITRDVMVDPVET---SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~---~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~ 313 (968)
...+..||||++.+.+|..+ +|||.|++.||.+|+.. +.+||.|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 44688999999999988766 99999999999999976 45999999988543
No 116
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.37 E-value=1.6e-07 Score=81.45 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=43.0
Q ss_pred CcccccccccCCCC---ceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVD---PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~d---pv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
++..||||++.|.+ +++++|||.|++.||.+|+.. +.+||.|+.++.+
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 67899999999988 888999999999999999964 5699999998754
No 117
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.34 E-value=4.4e-07 Score=74.16 Aligned_cols=49 Identities=16% Similarity=0.409 Sum_probs=41.8
Q ss_pred CCcccccccccCCC---CceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 263 LQSFYCPITRDVMV---DPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 263 ~~~~~cpi~~~~m~---dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
..+..||||++.+. +|++++|||+|++.||.+|+.. +.+||.|+..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 36788999999884 5678999999999999999976 4589999998854
No 118
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.34 E-value=2.7e-07 Score=83.89 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=42.5
Q ss_pred CcccccccccCCCCce------------------ecCCchhhhHHHHHHHHh----cCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPV------------------ETSSGQTFERSAIEKWFS----DGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv------------------~~~~g~t~~r~~i~~~~~----~~~~~CP~t~~~l~~ 312 (968)
.+..||||++.|.+|+ +++|||.|++.||.+|+. ..+.+||+|+..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4679999999999887 789999999999999996 346799999988843
No 119
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.33 E-value=0.00019 Score=86.65 Aligned_cols=298 Identities=11% Similarity=0.021 Sum_probs=195.1
Q ss_pred HhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccc
Q 002091 510 HLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVT 589 (968)
Q Consensus 510 ~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~ 589 (968)
.++.....-.+..|+.+|+-+-..... +++..|-..|.....+.+.++.-|+-+|+.+..+..
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~~~-------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---------- 427 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGNLL-------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---------- 427 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSCTT-------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----------
T ss_pred hhhhccchHHHHHHHHHhhhhccCchH-------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----------
Confidence 466666667788888888877542221 245555556653212236678888888888775321
Q ss_pred cccchhHHHHHHHhhccCC--------HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHH
Q 002091 590 LLESDKEIFMLFSLINLTG--------PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVK 661 (968)
Q Consensus 590 il~~~~~i~~l~~ll~~~~--------~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~ 661 (968)
..++..|...+.+.+ +.++..++-.|.-...+..+.+ +++.|..++..++..++..|+.
T Consensus 428 ----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee---------v~e~L~~~L~dd~~~~~~~Aal 494 (963)
T 4ady_A 428 ----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE---------VYEALKEVLYNDSATSGEAAAL 494 (963)
T ss_dssp ----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH---------HHHHHHHHHHTCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHhcCCHHHHHHHHH
Confidence 134566666666444 5566666655555433322322 5777888888777777777877
Q ss_pred HHHHhc-cCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCC
Q 002091 662 LFCCLV-DDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQN 739 (968)
Q Consensus 662 ~L~~Ls-~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~ 739 (968)
+|..+- ..+++ .++..|+..+....+++++..++..|+-+.. .++. ++.+++.|...
T Consensus 495 ALGli~vGTgn~---------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~--- 553 (963)
T 4ady_A 495 GMGLCMLGTGKP---------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLAS--- 553 (963)
T ss_dssp HHHHHHTTCCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHC---
T ss_pred HHhhhhcccCCH---------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhC---
Confidence 777652 23332 3567777777666778899888888887765 4443 55666677652
Q ss_pred CCchhHHHHHHHHHHhhccCC-CCHHHHHHHHHcCChHHHHHHhh-cCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 002091 740 DPNRFQVVENAVGALRRFTAP-TNLEWQKRAAEAGVIPKLVQLLE-YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGF 817 (968)
Q Consensus 740 ~~~~~~v~e~a~~aL~~L~~~-~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~ 817 (968)
.++-+|..++.+++--..+ ++... +..|+..+. +.+..+|+.|+.+|+.+...++
T Consensus 554 --~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------ 610 (963)
T 4ady_A 554 --DESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------ 610 (963)
T ss_dssp --SCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------
T ss_pred --CCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------
Confidence 4567888888777644443 34433 343444443 4577899999999998863221
Q ss_pred cccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhc-cCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHH
Q 002091 818 WCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL-EDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRM 896 (968)
Q Consensus 818 ~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L 896 (968)
..++.++.+| ++.|+.+|..+..||..+..+.. ...+++.|
T Consensus 611 -----------------------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~---------~~~aid~L 652 (963)
T 4ady_A 611 -----------------------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG---------LQSAIDVL 652 (963)
T ss_dssp -----------------------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC---------CHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC---------cHHHHHHH
Confidence 2567777744 56889999999999999872211 12356778
Q ss_pred HHHhcCCChHHHHHHHHHHHHHh
Q 002091 897 VRFLSSPSPKLQEKALDSVERIF 919 (968)
Q Consensus 897 ~~ll~~~~~~v~~~a~~~L~~l~ 919 (968)
..++.+.++.|++.|+..|..+.
T Consensus 653 ~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 653 DPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHccCCCHHHHHHHHHHHHHHh
Confidence 88889999999999999999886
No 120
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.32 E-value=1.3e-07 Score=78.40 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=40.4
Q ss_pred CcccccccccCCCCceecCCchh-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
+++.||||++.+.|||+++|||+ ||+.|+.+| ..||+|++++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 56789999999999999999999 999999999 689999988753
No 121
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.32 E-value=2.2e-07 Score=72.14 Aligned_cols=46 Identities=17% Similarity=0.478 Sum_probs=40.9
Q ss_pred CcccccccccCCCC---ceecC-CchhhhHHHHHHHHhcCCCCCCCCCCcC
Q 002091 264 QSFYCPITRDVMVD---PVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (968)
Q Consensus 264 ~~~~cpi~~~~m~d---pv~~~-~g~t~~r~~i~~~~~~~~~~CP~t~~~l 310 (968)
++..||||++.+.+ |++++ |||.|++.||.+|+.. +.+||.++.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 56789999999998 88887 9999999999999965 67999999865
No 122
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=2.2e-07 Score=77.34 Aligned_cols=48 Identities=15% Similarity=0.355 Sum_probs=42.9
Q ss_pred CcccccccccCCCCc---eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDP---VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dp---v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
++..||||++.+.+| ++++|||.|++.||.+|+.. +.+||.|++++.+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 578899999999988 78999999999999999975 5699999998865
No 123
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.27 E-value=0.00041 Score=83.83 Aligned_cols=312 Identities=10% Similarity=0.024 Sum_probs=206.0
Q ss_pred ChHHHHHHhhc---CCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCC--------HHHHHHHHHHHHHh
Q 002091 421 GCILLLVTMAS---SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGP--------ESVKMRMATTLAEM 489 (968)
Q Consensus 421 g~i~~Lv~lL~---s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~--------~~~~~~aa~~L~~L 489 (968)
+++..|-..|. ++++.++..|+..|..+.....+ ..+..|...|.+.+ +.++..|+-.|...
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 45666666776 67888898898888877533322 13566777776554 56777777777665
Q ss_pred ccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHH
Q 002091 490 ELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETAT 569 (968)
Q Consensus 490 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~ 569 (968)
..... +..+++.|..++.+++...+..|+.+|+-+-....|.. ++..|+..+.+.. ...++..++.
T Consensus 465 ~~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~--~e~vrR~aal 530 (963)
T 4ady_A 465 AMGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQ--HGNITRGLAV 530 (963)
T ss_dssp STTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCS--CHHHHHHHHH
T ss_pred hcCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccC--cHHHHHHHHH
Confidence 32111 12356888999988887777888888887755444433 3455666554432 2678888999
Q ss_pred HHHHhhcCcccccCCCCccccccchhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhh
Q 002091 570 AIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLC 648 (968)
Q Consensus 570 ~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll 648 (968)
.|+.+.... ...++.++..+. ..+|.++..++.++.--+....+.. +++.|+..+
T Consensus 531 gLGll~~g~---------------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~ 586 (963)
T 4ady_A 531 GLALINYGR---------------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVA 586 (963)
T ss_dssp HHHHHTTTC---------------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHH
T ss_pred HHHhhhCCC---------------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHh
Confidence 999886432 344566666655 6788898888887765554433332 566666665
Q ss_pred c-cCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCH
Q 002091 649 E-HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGAL 726 (968)
Q Consensus 649 ~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l 726 (968)
. +.++.+|..|+.+|..+. -+.+ ..++.++.+|....++.++..|..+|+.++. ++. . .++
T Consensus 587 ~~d~~d~VRraAViaLGlI~-~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~------~ai 649 (963)
T 4ady_A 587 VSDSNDDVRRAAVIALGFVL-LRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q------SAI 649 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHHT-SSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H------HHH
T ss_pred ccCCcHHHHHHHHHHHHhhc-cCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H------HHH
Confidence 4 457889999999999886 3332 3577788877777889999999999999876 332 1 135
Q ss_pred HHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhc--CChHHHHHHHHHHhhhcc
Q 002091 727 PIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY--GTTLTKEHAATSLARFSK 802 (968)
Q Consensus 727 ~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~nl~~ 802 (968)
..|..++.+ .+..++.+|+.+|+.+..+.+......+ .+....|.....+ .++..+-.+..|.+-+-.
T Consensus 650 d~L~~L~~D------~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 650 DVLDPLTKD------PVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHHHHHTC------SSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccC------CCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 566777777 6789999999999999987433210000 1112335555553 366777777777766543
No 124
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.26 E-value=3.5e-07 Score=99.19 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=44.4
Q ss_pred cccccccccCCCCceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 002091 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~ 313 (968)
+..||||.+.+.|||+++|||+||+.||..|+..+..+||.|+.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999975678999999988543
No 125
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=7.2e-07 Score=74.08 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=39.4
Q ss_pred CcccccccccCCCCceecCCchh-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
+++.||||++.+.|||+++|||+ ||+.|+.++ ..||+|++++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 56789999999999999999999 999999643 689999998855
No 126
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.10 E-value=4.8e-07 Score=78.93 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=49.2
Q ss_pred CcccccccccCCCCceec---CCchhhhHHHHHHHHhc----C---CCCCCC--CCCc--CCCCCCccCHhHHHHHHHHH
Q 002091 264 QSFYCPITRDVMVDPVET---SSGQTFERSAIEKWFSD----G---NNLCPL--TMTV--LDTSILRPNKTLRQSIEEWK 329 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~---~~g~t~~r~~i~~~~~~----~---~~~CP~--t~~~--l~~~~l~pn~~l~~~I~~w~ 329 (968)
+.|.||||++.+.+|+++ +|||+||+.|+.+|+.. | ...||. |+.. +.+..+ .+....+.+++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 578999999999999876 69999999999998752 3 247999 8887 544322 2333366777776
Q ss_pred h
Q 002091 330 D 330 (968)
Q Consensus 330 ~ 330 (968)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 127
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.04 E-value=0.00026 Score=70.00 Aligned_cols=186 Identities=15% Similarity=0.108 Sum_probs=141.3
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhccC--hhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCC-chh
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELSTC--NTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFS-DDN 454 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~-~~n 454 (968)
.+.+..+..+|.. ++..+.+|+..|-++-+. ...+..+.+ ..++.++.++++.|..+..+|.++|..+-.+ +-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 5678888888865 566899999999998773 445555554 6799999999999999999999999998633 222
Q ss_pred HHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCC
Q 002091 455 VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP 534 (968)
Q Consensus 455 ~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 534 (968)
...+.. ....+..+++++++-.+..++..+..+......+ +++..+..++.+.+++++..++++|.+++...
T Consensus 110 ~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 110 SKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 222222 2467888889999999999999999994333232 46788889999999999999999999999644
Q ss_pred ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091 535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 579 (968)
Q Consensus 535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 579 (968)
+.... -.+.+..+-++|.+.+ +.+++.|+.+|..+.+.+-
T Consensus 182 ~D~~i--~~~I~~eI~elL~~eD---~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 182 ADSGH--LTLILDEIPSLLQNDN---EFIVELALDVLEKALSFPL 221 (265)
T ss_dssp SSCCC--GGGTTTTHHHHHTCSC---HHHHHHHHHHHHHHTTSCC
T ss_pred CCHHH--HHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCcc
Confidence 32211 1235566677787765 8999999999999998653
No 128
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.01 E-value=0.019 Score=72.33 Aligned_cols=389 Identities=10% Similarity=0.102 Sum_probs=209.0
Q ss_pred cChHHHHHHhhcC--CCHHHHHHHHHHHHhccC------------CchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHH
Q 002091 420 QGCILLLVTMASS--DDNQASRDAQELLENLSF------------SDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATT 485 (968)
Q Consensus 420 ~g~i~~Lv~lL~s--~~~~~~~~a~~~L~~Ls~------------~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~ 485 (968)
+|....|+.++.+ .+..+|..|+..|+|... .++.|..+ + ..++..+...+..+|..++.+
T Consensus 34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~i-k----~~ll~~l~~~~~~ir~~l~~~ 108 (960)
T 1wa5_C 34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI-K----KEIVPLMISLPNNLQVQIGEA 108 (960)
T ss_dssp TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH-H----HHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH-H----HHHHHHHHhCCHHHHHHHHHH
Confidence 5677778887743 467899999999998741 11223333 2 235555555668888888888
Q ss_pred HHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCc-------cHHHHH--HcCChHHHHHH----
Q 002091 486 LAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQ-------NGLQMI--KEGAVGPLVDL---- 552 (968)
Q Consensus 486 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~-------~~~~i~--~~g~v~~Lv~l---- 552 (968)
+..++..+-.. .-++.++.|+++++++++..+..++.+|..++..-. .+..+- -....+.++.+
T Consensus 109 ia~ia~~d~p~---~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~ 185 (960)
T 1wa5_C 109 ISSIADSDFPD---RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTV 185 (960)
T ss_dssp HHHHHHHHSTT---TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcc---chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886532110 126789999999998888899999999999985211 111111 11234444443
Q ss_pred ---hcccCCCCcchH------HHHHHHHHHhhcCcccccCCCCcccccc--chhHHHHHHHhhcc------CC-------
Q 002091 553 ---LLHHSSSSSSLR------EETATAIMHLAVSTMYQESSQTPVTLLE--SDKEIFMLFSLINL------TG------- 608 (968)
Q Consensus 553 ---L~~~~~~~~~~~------~~a~~~L~~La~~~~~~~~~~~~~~il~--~~~~i~~l~~ll~~------~~------- 608 (968)
+.+...+...++ ..++.++.++....... .+. -...++.+..++.. .+
T Consensus 186 ~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~ 257 (960)
T 1wa5_C 186 DEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPE--------FFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHAS 257 (960)
T ss_dssp HHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCH--------HHHHTHHHHHHHHHHHHSCCSCCCC------CCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchH--------HHHHHHHHHHHHHHHHHcCCCCcccCCccccccc
Confidence 332211101112 22444555543221110 010 02223334444432 11
Q ss_pred --HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhc-----cCChhHHHHHHHHHHHhccCCChhHHHHhhc-
Q 002091 609 --PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE-----HDNENVRANAVKLFCCLVDDGDEAIIREHVG- 680 (968)
Q Consensus 609 --~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~-----~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~- 680 (968)
..++..++.+|..+... ....+...+. ..++..+.++. ..++.+...++..+..++.. ... ...+.
T Consensus 258 ~~~~vk~~~~~~l~~l~~~-~~~~f~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~--~~~-~~~~~~ 331 (960)
T 1wa5_C 258 VLIKVKSSIQELVQLYTTR-YEDVFGPMIN--EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI--PKY-FEIFNN 331 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CHHHHHHHHH--HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS--HHH-HGGGCS
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc--HhH-HHHHcC
Confidence 13567778888777632 1223332222 24555566664 33578888899888888622 111 12221
Q ss_pred cccHHHHH-----HHhccC--------CC--------------HHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHH
Q 002091 681 QKCLETLV-----TIIQSS--------HN--------------EEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNF 732 (968)
Q Consensus 681 ~~~i~~Lv-----~lL~~~--------~~--------------~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~l 732 (968)
...++.++ ..+.-. .+ ...+..|..+|..|+. ..+. +. ...++.+...
T Consensus 332 ~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~-~~~l~~i~~~ 407 (960)
T 1wa5_C 332 ESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---VT-NIFLAHMKGF 407 (960)
T ss_dssp HHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHH
T ss_pred chHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---HH-HHHHHHHHHH
Confidence 13344444 222110 01 1245566666666665 2211 10 0122333334
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhhccCCCC-H-----------HHHHHHHHcCChHHHHHHhhcC---ChHHHHHHHHHH
Q 002091 733 LKNGRQNDPNRFQVVENAVGALRRFTAPTN-L-----------EWQKRAAEAGVIPKLVQLLEYG---TTLTKEHAATSL 797 (968)
Q Consensus 733 L~~~~~~~~~~~~v~e~a~~aL~~L~~~~~-~-----------~~~~~~~~~g~i~~Lv~lL~~~---~~~v~~~Aa~aL 797 (968)
+.........+...++.|+.+++.++.++. . +....+. ..++..+.+. ++.+|..|+|+|
T Consensus 408 l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~-----~~v~p~l~~~~~~~p~vr~~a~~~l 482 (960)
T 1wa5_C 408 VDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT-----KEIAPDLTSNNIPHIILRVDAIKYI 482 (960)
T ss_dssp HHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH-----HHTHHHHHCSSCSCHHHHHHHHHHH
T ss_pred HHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH-----HHhHHHhcCCCCCCceehHHHHHHH
Confidence 442000001456789999999999975310 1 1211111 1223334555 889999999999
Q ss_pred hhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 798 ARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 798 ~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
+.++..- .++ .-..+++.++..|.+++..|+..|+.||.+++
T Consensus 483 g~~~~~~-------------------------------~~~-----~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 483 YTFRNQL-------------------------------TKA-----QLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHTGGGS-------------------------------CHH-----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhhC-------------------------------CHH-----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 9998311 000 12236778888888888899999999999988
No 129
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.01 E-value=0.00011 Score=79.91 Aligned_cols=262 Identities=10% Similarity=0.059 Sum_probs=158.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhc
Q 002091 423 ILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEG 502 (968)
Q Consensus 423 i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~ 502 (968)
.+..++++.++|...+.-....+.+++..++... + ++..|.+=+.++++-+|..|..+|.++...+-..
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~------ 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-I----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ------ 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH------
Confidence 4556778889999999988888888876533221 2 3456777788999999999999999986544222
Q ss_pred CchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccccc
Q 002091 503 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 582 (968)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 582 (968)
...+.+.+.|.+.+|.+++.|+-+..+|... +.+ +++ +.++.+-+++.+.+ +.++.+|+.+|..+...+
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe-~v~-~~~~~l~~ll~d~n---~~V~~~Al~lL~ei~~~d---- 207 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD-VVK-RWVNEAQEAASSDN---IMVQYHALGLLYHVRKND---- 207 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH-HHH-TTHHHHHHHTTCSS---HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH-HHH-HHHHHHHHHhcCCC---ccHHHHHHHHHHHHHhhc----
Confidence 2456777888899999999999999999743 222 233 68899999998765 788999999999987532
Q ss_pred CCCCccccccchhHHHHHHHhhccC---CHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHH
Q 002091 583 SSQTPVTLLESDKEIFMLFSLINLT---GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 659 (968)
Q Consensus 583 ~~~~~~~il~~~~~i~~l~~ll~~~---~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a 659 (968)
..++..++..+... +|..+...++.+..++....... ....++.|...+++.++.|...|
T Consensus 208 -----------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~------~~~~~~~l~~~L~~~~~aVvyEa 270 (355)
T 3tjz_B 208 -----------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR------DSPLFDFIESCLRNKHEMVVYEA 270 (355)
T ss_dssp -----------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------CCCCCSSHHHHHHH
T ss_pred -----------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh------HHHHHHHHHHHHcCCChHHHHHH
Confidence 12344444444432 68888888887766654321111 12467778888899999999999
Q ss_pred HHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhc
Q 002091 660 VKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKN 735 (968)
Q Consensus 660 ~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~ 735 (968)
++++..+.. .+... -..++..|..+|.+. +..++..|++.|..+.. .+..... .-.-+..++.+
T Consensus 271 ~k~I~~l~~-~~~~~-----~~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d 335 (355)
T 3tjz_B 271 ASAIVNLPG-CSAKE-----LAPAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTD 335 (355)
T ss_dssp HHHHTC-----------------CCCTHHHHHHSS-SSSSHHHHHHCC-----------------------------
T ss_pred HHHHHhccC-CCHHH-----HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccC
Confidence 999999962 22211 123455666677664 45689999999988887 5544321 23445666666
No 130
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.99 E-value=8.9e-07 Score=83.03 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=48.6
Q ss_pred CCcccccccccCCCCc-------eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCccC
Q 002091 263 LQSFYCPITRDVMVDP-------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dp-------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn 318 (968)
.+++.||||++.+.+| +.++|||+|+..||.+|+.. +.+||+|+..+....+.|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 4788999999999998 89999999999999999976 4699999999987766664
No 131
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.98 E-value=0.00031 Score=69.53 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=141.8
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHHhccC--chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHH
Q 002091 462 NYFKHLLQRLSAGPESVKMRMATTLAEMELT--DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGL 538 (968)
Q Consensus 462 g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~ 538 (968)
+.+..|..+|...++.++.++..+|..+-.. +..+..+. ...++.+++++++.+..+.-.|+++|..|-. .|-...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3567788999999999999999999998432 33333333 4578999999999999999999999999985 444444
Q ss_pred HHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHH
Q 002091 539 QMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQT 618 (968)
Q Consensus 539 ~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~ 618 (968)
.+.. .+.+|.+++.+++ +-+.++++..|+.+--. --....+..+.+++.+.++.++..++++
T Consensus 112 ~y~K--l~~aL~dlik~~~---~il~~eaae~Lgklkv~-------------~~~~~V~~~l~sLl~Skd~~vK~agl~~ 173 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPD---DMMRIETIDVLSKLQPL-------------EDSKLVRTYINELVVSPDLYTKVAGFCL 173 (265)
T ss_dssp HHHH--HHHHHHHHTTSCC---HHHHHHHHHHHHHCCBS-------------CCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHhcCCC---chHHHHHHHHhCcCCcc-------------cchHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 4444 5678888888665 77899999999999321 1135677888999999999999999999
Q ss_pred HHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 619 FNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 619 L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
|.+++.....+++- .+.+.-+-.++++.|+.+++.|..+|-.+.
T Consensus 174 L~eia~~S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 174 FLNMLNSSADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp HHHHGGGCSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHhhcccCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99998754333211 135556678999999999999999999987
No 132
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.97 E-value=0.0017 Score=72.26 Aligned_cols=356 Identities=13% Similarity=0.090 Sum_probs=201.6
Q ss_pred CChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcccccc-chhHHHHHHH-hhccCCHHHHHHHHHHHHH
Q 002091 544 GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLE-SDKEIFMLFS-LINLTGPNVQQRILQTFNA 621 (968)
Q Consensus 544 g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~-~~~~i~~l~~-ll~~~~~~~~~~al~~L~~ 621 (968)
.++..++++|.... ..++..+.+..+.-|...+...+. .+.++. .......+.. .+...++-.+..+..++..
T Consensus 77 ~~~~~~l~lL~~~~--~~d~vqYvL~Li~DlL~~~~~~~~---~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~l 151 (480)
T 1ho8_A 77 KTLIPLIHLLSTSD--NEDCKKSVQNLIAELLSSDKYGDD---TVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL 151 (480)
T ss_dssp TTHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHCSSSSHH---HHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcC--hHHHHHHHHHHHHHHHhcCcchHH---HHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHH
Confidence 35667777777533 266777777777777664321000 001111 1111111222 2233334444555555444
Q ss_pred hccC-CChhhHHHHHhhcCchHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHHhhccc--cHHHHHHHhccC---
Q 002091 622 LCRS-PSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQK--CLETLVTIIQSS--- 694 (968)
Q Consensus 622 L~~~-~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~--~i~~Lv~lL~~~--- 694 (968)
++.. ....+....+.. .+-++..+.+. +...+.-++.+|..|. ..++.+..+...+ .++.++.++...
T Consensus 152 l~~~~~~~~~~l~~l~~---~~~~~~~L~~~~~~~~~~i~v~~L~~Ll--~~~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 152 LVQNGLHNVKLVEKLLK---NNNLINILQNIEQMDTCYVCIRLLQELA--VIPEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HTSTTTCCHHHHHHHHH---CHHHHHHHHCTTCHHHHHHHHHHHHHHH--TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HhccCCccHhHHHHHhh---hHHHHHHhccccCCchHHHHHHHHHHHh--cchhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 4422 121121111110 00244445442 3455667888888875 3455666665543 356665544321
Q ss_pred -------------CCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCH--HHHHHHhhcCCCCCCchhHHHHHHHHHHhhccC
Q 002091 695 -------------HNEEEIASAMGILSKLPEVPQFTQWLLDAGAL--PIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 759 (968)
Q Consensus 695 -------------~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l--~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~ 759 (968)
...+++..++-+++-|+.+++..+.+...+.. ..|+..++.. ....+..-++.+|.|+..
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s-----~KEKvvRv~la~l~Nll~ 301 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT-----IKEKVSRLCISIILQCCS 301 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC-----CSHHHHHHHHHHHHHTTS
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhc
Confidence 13567889999999999988888888777744 5667777763 567888899999999998
Q ss_pred CCC---HHHHH-HHHHcCChHHHHHHhhc---CChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCC
Q 002091 760 PTN---LEWQK-RAAEAGVIPKLVQLLEY---GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHG 832 (968)
Q Consensus 760 ~~~---~~~~~-~~~~~g~i~~Lv~lL~~---~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~ 832 (968)
... ..... .+...++ +.++..|.. +|+++...-......|...-..++....... -+....-.+.|+|.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~---El~sG~L~WSP~H~ 377 (480)
T 1ho8_A 302 TRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA---ELDSKLLCWSPPHV 377 (480)
T ss_dssp SSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH---HHHHTCCCCCGGGG
T ss_pred ccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHH---HHhcCCcccCCCcc
Confidence 621 12222 3444555 445566653 3777776655555444432221111000000 00001123456663
Q ss_pred C-ccCcccchHHhh--cCChHHHHhhccC----------CChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHH
Q 002091 833 G-LCGIESSFCLLE--ANAVRPLVRVLED----------PDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRF 899 (968)
Q Consensus 833 ~-~c~~~~~~~l~~--~g~i~~Lv~lL~~----------~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~l 899 (968)
. ..=.++...+.+ ...+..|+++|.+ .|+.+...||.=+..+. ....+++..+.+.||-+.+.++
T Consensus 378 se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefv--r~~P~gr~i~~~lg~K~~VM~L 455 (480)
T 1ho8_A 378 DNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV--ELLPESIDVLDKTGGKADIMEL 455 (480)
T ss_dssp CHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH--HHCTTHHHHHHHHSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHH--HHCcchhHHHHHcCcHHHHHHH
Confidence 2 101122222322 2467889999973 36778888888888888 2223788899999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhc
Q 002091 900 LSSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 900 l~~~~~~v~~~a~~~L~~l~~ 920 (968)
+.++|++|+..|+.++.++..
T Consensus 456 m~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 456 LNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TSCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998753
No 133
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.95 E-value=1.6e-06 Score=81.11 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=66.1
Q ss_pred CHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccC
Q 002091 725 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 725 ~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s 804 (968)
.++.++.+|++ ++..+|..|+++|.++... .++.|+.+|.+.++.+|..|+++|+++..
T Consensus 13 ~~~~l~~~L~~------~~~~vR~~A~~~L~~~~~~-------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-- 71 (131)
T 1te4_A 13 GLVPRGSHMAD------ENKWVRRDVSTALSRMGDE-------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-- 71 (131)
T ss_dssp --------CCS------SCCCSSSSCCSSTTSCSST-------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--
T ss_pred cHHHHHHHhcC------CCHHHHHHHHHHHHHhCch-------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--
Confidence 45556666665 3444566666666655421 14666666666666777777777766641
Q ss_pred CCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhh
Q 002091 805 LGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGS 884 (968)
Q Consensus 805 ~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~ 884 (968)
..+++.|+.+|.++++.||..++++|..+.+
T Consensus 72 -----------------------------------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------- 102 (131)
T 1te4_A 72 -----------------------------------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------- 102 (131)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------
T ss_pred -----------------------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 1246666666666666777777777666641
Q ss_pred HHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHH
Q 002091 885 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVER 917 (968)
Q Consensus 885 ~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 917 (968)
.++++.|..++.++++.|+..|.+.|.+
T Consensus 103 -----~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 -----ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1245666666666666677666666543
No 134
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=5.4e-06 Score=69.83 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=40.1
Q ss_pred CcccccccccCCCC--------------ceec-CCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVD--------------PVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~d--------------pv~~-~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+.. +.+||+|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 56779999999988 4555 59999999999999975 4699999988753
No 135
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.92 E-value=0.00072 Score=63.91 Aligned_cols=222 Identities=16% Similarity=0.242 Sum_probs=159.5
Q ss_pred hccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhc
Q 002091 679 VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRF 757 (968)
Q Consensus 679 ~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L 757 (968)
++...+..++.+|..+ -..++.+|+.++.+++. .++....+ +..|+.+++.+ ...++......+++.+
T Consensus 29 ~d~~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks-----EaIpltqeIa~a~G~l 97 (253)
T 2db0_A 29 YDESVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS-----EAIPLTQEIAKAFGQM 97 (253)
T ss_dssp HCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC-----CSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc-----ccCchHHHHHHHHhHH
Confidence 4567888899999773 45699999999999998 77776655 45566666653 3455656677888888
Q ss_pred cCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCc
Q 002091 758 TAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGI 837 (968)
Q Consensus 758 ~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~ 837 (968)
+.- +|+.... .+|.|..-..-+++.+|...+.+|..+...++.
T Consensus 98 a~i-~Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~------------------------------- 140 (253)
T 2db0_A 98 AKE-KPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPM------------------------------- 140 (253)
T ss_dssp HHH-CHHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-------------------------------
T ss_pred HHh-CHHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChH-------------------------------
Confidence 876 6766544 478999999999999999999999999854432
Q ss_pred ccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHH
Q 002091 838 ESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVER 917 (968)
Q Consensus 838 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 917 (968)
.-.+++..+..+|+++|..=+-.|+.-+..+. + +..+.+ .-.+++|..++.+.|.-|+..|+.+|.+
T Consensus 141 ------l~~~v~rdi~smltskd~~Dkl~aLnFi~alG--e---n~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~ 207 (253)
T 2db0_A 141 ------LMASIVRDFMSMLSSKNREDKLTALNFIEAMG--E---NSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVH 207 (253)
T ss_dssp ------HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC--T---TTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh--c---cCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHH
Confidence 23357888999999888665655555555554 2 122222 3458999999999999999999999999
Q ss_pred HhcCh-hhHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHhhcccCCC
Q 002091 918 IFRLP-EFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSS 966 (968)
Q Consensus 918 l~~~~-~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~~~~s~ 966 (968)
+.... .++.. ....++-+.+.++.++.....+|..|--+...|+
T Consensus 208 lA~~npklRki-----i~~kl~e~~D~S~lv~~~V~egL~rl~l~e~~~~ 252 (253)
T 2db0_A 208 LATLNDKLRKV-----VIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSS 252 (253)
T ss_dssp HHTSCHHHHHH-----HHHHHHHCCCSCHHHHHHHHHHHHHHHHC-----
T ss_pred HHHcCHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcccC
Confidence 97543 33321 2334566777888889998888888876665543
No 136
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.90 E-value=6.1e-05 Score=78.41 Aligned_cols=181 Identities=13% Similarity=0.128 Sum_probs=133.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhhh-cCCHHHHHHHHHHHHHhcCC--CccHHHHH
Q 002091 466 HLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSV--PQNGLQMI 541 (968)
Q Consensus 466 ~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~ 541 (968)
.+.+.+.+.++..|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+.. +..... +
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-A 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-H
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-H
Confidence 477778888999999999999888442 2211000 0246778888894 88999999999999999942 222121 1
Q ss_pred HcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002091 542 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNA 621 (968)
Q Consensus 542 ~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~ 621 (968)
...++.|++.+.+.. ..+++.+..+|..++... .-...++.+...+++.++.++..++..|..
T Consensus 97 -~~ilp~ll~~l~d~~---~~vr~~a~~aL~~~~~~~-------------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKK---PNVVTALREAIDAIYAST-------------SLEAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp -HHHHHHHHHGGGCCC---HHHHHHHHHHHHHHHTTS-------------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 236888999888765 789999999999998632 124578888899999999999999999999
Q ss_pred hccCCChh-hHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 622 LCRSPSAG-NIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 622 L~~~~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
+....... .....+. ..++.|+.++.+.+.++|..|..++..+.
T Consensus 160 ~l~~~~~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 160 ALTRTQPTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHTTCCGGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 65332211 1122332 36889999999999999999999999987
No 137
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.89 E-value=6.6e-06 Score=65.69 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCcccccccccCCCCceec--CCchh-hhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 263 LQSFYCPITRDVMVDPVET--SSGQT-FERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~--~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
.++..|+||++-.+|+|++ +|||. ||..|+.+|+.. +..||+|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3677899999999999988 99999 899999999864 568999999874
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.87 E-value=2.4e-06 Score=79.85 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=89.7
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHH
Q 002091 420 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASL 499 (968)
Q Consensus 420 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i 499 (968)
.+.++.|+.+|+++++.++..|+..|.++.. ..++.|+..|++.++.+|..|+++|..+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4567888999998888888888887776531 236889999999999999999999987742
Q ss_pred hhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHh
Q 002091 500 LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL 574 (968)
Q Consensus 500 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L 574 (968)
..+++.|+.+|+++++.++..|+++|.++.. ..+++.|+.++.+.+ +.++..|+.+|.+|
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~---~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT---GFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC---THHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC---HHHHHHHHHHHHhC
Confidence 3468999999999999999999999999852 235788999997554 78898888887653
No 139
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.86 E-value=7.7e-06 Score=65.06 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=42.1
Q ss_pred CcccccccccCCCCceec--CCchh-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPVET--SSGQT-FERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~--~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
.+..|+||++-.+||+++ +|||. ||+.|+.+|+.. +..||+|++++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 456799999999999998 99999 999999999865 4689999998753
No 140
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.78 E-value=0.00026 Score=77.04 Aligned_cols=246 Identities=13% Similarity=0.118 Sum_probs=161.2
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccC
Q 002091 504 VLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQES 583 (968)
Q Consensus 504 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 583 (968)
.....++++.+.+...|+-.--.+.+++..++.. + =++..|.+=+.+++ +-++..|+.+|++|....-
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~N---~~iR~lALRtL~~I~~~~m---- 136 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGKE---DSYRGPAVRALCQITDSTM---- 136 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSSC---HHHHHHHHHHHHHHCCTTT----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCCc---HhHHHHHHHHHhcCCCHHH----
Confidence 3456788899999999999999999998653221 1 14566666676665 7899999999999986431
Q ss_pred CCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHH
Q 002091 584 SQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLF 663 (968)
Q Consensus 584 ~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L 663 (968)
.+...+.+...+.+.+|.+++.|+-+...|... .++. + .+++..+-+++.+.++.++.+|+.+|
T Consensus 137 ---------~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe~---v--~~~~~~l~~ll~d~n~~V~~~Al~lL 200 (355)
T 3tjz_B 137 ---------LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFDV---V--KRWVNEAQEAASSDNIMVQYHALGLL 200 (355)
T ss_dssp ---------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHHH---H--HTTHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHHH---H--HHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 134567788888899999999999999999753 3442 2 25788899999999999999999999
Q ss_pred HHhccCCChhHHHHhhccccHHHHHHHhccCC--CHHHHHHHHHHHhcCCC-C-HHhHHHHHHcCCHHHHHHHhhcCCCC
Q 002091 664 CCLVDDGDEAIIREHVGQKCLETLVTIIQSSH--NEEEIASAMGILSKLPE-V-PQFTQWLLDAGALPIVLNFLKNGRQN 739 (968)
Q Consensus 664 ~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~--~~~~~~~Al~~L~nL~~-~-~~~~~~l~~~g~l~~Lv~lL~~~~~~ 739 (968)
..+. ..+. ..+..|+.-+.... ++-.+..-++++..+.. + +... ...++.+...|++
T Consensus 201 ~ei~-~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~-----~~~~~~l~~~L~~---- 261 (355)
T 3tjz_B 201 YHVR-KNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD-----SPLFDFIESCLRN---- 261 (355)
T ss_dssp HHHH-TTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCC----
T ss_pred HHHH-hhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHHcC----
Confidence 9997 2221 24556666655531 44455556677777766 3 2222 2345666666666
Q ss_pred CCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccC
Q 002091 740 DPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNS 804 (968)
Q Consensus 740 ~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s 804 (968)
.+..|.-+|+.++..+... +... ...+++.|..++.+.++.+|-.|...|..+....
T Consensus 262 --~~~aVvyEa~k~I~~l~~~-~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 262 --KHEMVVYEAASAIVNLPGC-SAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp --SSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred --CChHHHHHHHHHHHhccCC-CHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 5678999999999998752 2211 2456788899999999999999998888887543
No 141
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.78 E-value=0.0017 Score=61.45 Aligned_cols=215 Identities=16% Similarity=0.235 Sum_probs=155.1
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhH
Q 002091 639 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFT 717 (968)
Q Consensus 639 g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~ 717 (968)
.++..++.++.++-=.++.+|+.++.+++ ...++.+. ..+..|+-+++.+..........++++.++. .++..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~-~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIA-KTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHH-HHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 46788888988776789999999999998 33333322 3466777787777666676778889999988 88776
Q ss_pred HHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHH
Q 002091 718 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSL 797 (968)
Q Consensus 718 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL 797 (968)
+.+ +|.+..=.+- .++.++-+-..+|..++.. +|.....+ +.-+..++.+.+..=|..|..-+
T Consensus 106 ~~v-----Vp~lfanyri------gd~kikIn~~yaLeeIara-nP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi 168 (253)
T 2db0_A 106 KSM-----IPVLFANYRI------GDEKTKINVSYALEEIAKA-NPMLMASI-----VRDFMSMLSSKNREDKLTALNFI 168 (253)
T ss_dssp HHH-----HHHHHHHSCC------CSHHHHHHHHHHHHHHHHH-CHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHH
T ss_pred Hhh-----HHHHHHHHhc------CCccceecHHHHHHHHHHh-ChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHH
Confidence 544 4555554444 3577888999999999987 77765443 56688889888877788888777
Q ss_pred hhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-c
Q 002091 798 ARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-E 876 (968)
Q Consensus 798 ~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~ 876 (968)
+.+..++..... -.++.|..||.+.|.-||..+..+|.+++ .
T Consensus 169 ~alGen~~~yv~-------------------------------------PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 169 EAMGENSFKYVN-------------------------------------PFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HTCCTTTHHHHG-------------------------------------GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHhccCccccC-------------------------------------cchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 777643322111 26889999999999999999999999999 3
Q ss_pred ccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh
Q 002091 877 GERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP 922 (968)
Q Consensus 877 ~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 922 (968)
.. ..+.. +...++=+++.+..++......|.++.-.+
T Consensus 212 np---klRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l~e 248 (253)
T 2db0_A 212 ND---KLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLLLE 248 (253)
T ss_dssp CH---HHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHHC-
T ss_pred CH---HHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 21 22221 233344457788889999999998886433
No 142
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.78 E-value=5.4e-06 Score=69.28 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=39.5
Q ss_pred CcccccccccCCCCceecCCchh-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
++..|+||++.+.|||.++|||. ||+.|+.+|. .||+|++++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 45689999999999999999999 9999999873 89999998854
No 143
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.73 E-value=1.9e-05 Score=69.86 Aligned_cols=47 Identities=21% Similarity=0.466 Sum_probs=40.1
Q ss_pred CcccccccccCCCCc------------------eecCCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 264 QSFYCPITRDVMVDP------------------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 264 ~~~~cpi~~~~m~dp------------------v~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
++-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||+|++.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 456799999999987 34799999999999999965 789999998753
No 144
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.71 E-value=5.7e-06 Score=89.55 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=40.5
Q ss_pred CcccccccccCCCCceecCCchh-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
+++.||||++.+.|||+++|||+ ||+.|+.+| ..||+|+.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 57899999999999999999999 999999988 689999998753
No 145
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.59 E-value=0.0008 Score=69.83 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=129.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhccCC-chhH-HHHHhCCchHHHHHHHh-cCCHHHHHHHHHHHHHhccCchhhHHHhh
Q 002091 425 LLVTMASSDDNQASRDAQELLENLSFS-DDNV-VQMAKANYFKHLLQRLS-AGPESVKMRMATTLAEMELTDHHKASLLE 501 (968)
Q Consensus 425 ~Lv~lL~s~~~~~~~~a~~~L~~Ls~~-~~n~-~~i~~~g~v~~Lv~~L~-~~~~~~~~~aa~~L~~L~~~~~~~~~i~~ 501 (968)
.+...+.+.+...|..|+..|..+... +... ..+ ...++.|...|. ..+..++..|+.+|..|+..-.....-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 366677888999999999999888632 2100 000 123566777784 88899999999999999632111101112
Q ss_pred cCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccc
Q 002091 502 GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 581 (968)
Q Consensus 502 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 581 (968)
...++.|++.+++.++.++..|..+|.++...... ...++.+...|.+.+ +.++..++..|..+.......
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~---~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKN---PSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999999999864431 125677888887654 789999999999975432110
Q ss_pred cCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhcc
Q 002091 582 ESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCR 624 (968)
Q Consensus 582 ~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~ 624 (968)
.. ..-.-...++.+..++.+.++.++..+..++..++.
T Consensus 168 ~~-----~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 AL-----NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GC-----CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred Cc-----cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 00 011124678889999999999999999999988864
No 146
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0005 Score=71.67 Aligned_cols=187 Identities=15% Similarity=0.226 Sum_probs=133.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hcc-CchhhHHHhh-cCchHHHHHhh-hcCCHHHHHHHHHHHHHhcC--C-CccH-H
Q 002091 467 LLQRLSAGPESVKMRMATTLAE-MEL-TDHHKASLLE-GNVLGPLLHLV-SRGDIQMKKVAVKALRNLSS--V-PQNG-L 538 (968)
Q Consensus 467 Lv~~L~~~~~~~~~~aa~~L~~-L~~-~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls~--~-~~~~-~ 538 (968)
+...+.+.++..|..|+..|.. +.. .+.....-.+ ...+..|.+.+ ++.+..++..|+.+|..|+. . +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999999998 753 2211100112 24577888888 67899999999999999984 2 2222 2
Q ss_pred HHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcccccc--chhHHHHHHHhhccCCHHHHHHHH
Q 002091 539 QMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLE--SDKEIFMLFSLINLTGPNVQQRIL 616 (968)
Q Consensus 539 ~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~--~~~~i~~l~~ll~~~~~~~~~~al 616 (968)
... -.++.+++.+.+.. +.+++.+..+|..++..... . ... -+..++.++..+++.++.++..++
T Consensus 101 y~~--~llp~ll~~l~dkk---~~V~~aa~~al~~i~~~~~~-~-------~~~~~l~~ll~~l~~~l~~k~~~vk~~al 167 (249)
T 2qk1_A 101 YVS--LVFTPLLDRTKEKK---PSVIEAIRKALLTICKYYDP-L-------ASSGRNEDMLKDILEHMKHKTPQIRMECT 167 (249)
T ss_dssp HHH--HHHHHHHHGGGCCC---HHHHHHHHHHHHHHHHHSCT-T-------CTTCTTHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHH--HHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHccc-c-------ccCCcHHHHHHHHHHHHcCCChHHHHHHH
Confidence 222 26888999888765 77889989999888863211 0 111 245788889999999999999999
Q ss_pred HHHHHhccCCCh--hhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 617 QTFNALCRSPSA--GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 617 ~~L~~L~~~~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
.+|..++..... ..+...+ ....++.|..++.+.+..+|..|..+|..+.
T Consensus 168 ~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 168 QLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999998754221 2222223 1247999999999999999999999999886
No 147
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.54 E-value=0.0069 Score=67.36 Aligned_cols=343 Identities=15% Similarity=0.148 Sum_probs=195.8
Q ss_pred chhHHHHHHhhcc--ChHHHHHHHHHHHHhcc-Ch---hHHHHhhhccChHHHHHH-hhcCCCHHHHHHHHHHHHhccCC
Q 002091 379 DDAVESIVRSLGR--RIEERKLAVALLLELST-CN---TLRDQIGDVQGCILLLVT-MASSDDNQASRDAQELLENLSFS 451 (968)
Q Consensus 379 ~~~v~~lv~~L~~--~~~~~~~A~~~L~~Ls~-~~---~~~~~i~~~~g~i~~Lv~-lL~s~~~~~~~~a~~~L~~Ls~~ 451 (968)
...+..++..|+. ..+..+..+..+..+-. ++ ..-..+...+.....+.. ++..++.-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 4556677887754 35666777777776655 33 222222331222222333 33445555555665554444321
Q ss_pred -chh---HHHHHhCCchHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhhHHHhhcC--chHHHHHhhhcC---------
Q 002091 452 -DDN---VVQMAKANYFKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKASLLEGN--VLGPLLHLVSRG--------- 515 (968)
Q Consensus 452 -~~n---~~~i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~L~~~~~~~~~i~~~g--~i~~Lv~lL~~~--------- 515 (968)
..+ ...+.... -++..|... +...+..++..|..|...+++|..+.+.+ .+++++.+++..
T Consensus 156 ~~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 156 GLHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CCccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 111 11111110 244455552 45556678899999999999999887633 477777655421
Q ss_pred --------CHHHHHHHHHHHHHhcCCCccHHHHHHcCCh--HHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCC
Q 002091 516 --------DIQMKKVAVKALRNLSSVPQNGLQMIKEGAV--GPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQ 585 (968)
Q Consensus 516 --------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v--~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~ 585 (968)
...++-.++-+++-|+-.++....+...+.. +.|+++++... .+.+..-++++|.|+.........
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~--KEKvvRv~la~l~Nll~~~~~~~~-- 308 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI--KEKVSRLCISIILQCCSTRVKQHK-- 308 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHTTSSSSTTHH--
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcccchhhh--
Confidence 2456788999999999887777777766643 56777777644 267888899999998864321000
Q ss_pred CccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCC-ChhhHHHHHhhcCchHHHHHhhccC---ChhHHHHHHH
Q 002091 586 TPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP-SAGNIKTTLTQCSAIPVLVQLCEHD---NENVRANAVK 661 (968)
Q Consensus 586 ~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~-~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~v~~~a~~ 661 (968)
..++.+ -+..+.+.++.+|.... +..++..- +..|.+.|... -...-+....
T Consensus 309 ---------~~~~~~---------~~~~~~l~~l~~L~~rk~~Dedl~ed------l~~L~e~L~~~~~~ltsfDeY~~E 364 (480)
T 1ho8_A 309 ---------KVIKQL---------LLLGNALPTVQSLSERKYSDEELRQD------ISNLKEILENEYQELTSFDEYVAE 364 (480)
T ss_dssp ---------HHHHHH---------HHHHCHHHHHHHHHSSCCSSHHHHHH------HHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ---------hHHHHH---------HHHccchHHHHHHhhCCCCcHHHHHH------HHHHHHHHHHHHHhcccHHHHHHH
Confidence 001100 01122344455554321 11222111 22222222211 0112222222
Q ss_pred HHHHhccCCChh--------HHHHhhcc--ccHHHHHHHhcc---------CCCHHHHHHHHHHHhcCCC-CHHhHHHHH
Q 002091 662 LFCCLVDDGDEA--------IIREHVGQ--KCLETLVTIIQS---------SHNEEEIASAMGILSKLPE-VPQFTQWLL 721 (968)
Q Consensus 662 ~L~~Ls~~~~~~--------~~~~~~~~--~~i~~Lv~lL~~---------~~~~~~~~~Al~~L~nL~~-~~~~~~~l~ 721 (968)
+....-...+.+ +...+-+. ..+..|+++|.+ ..++.+..-|+.-|+.++. .|..+..+-
T Consensus 365 l~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~ 444 (480)
T 1ho8_A 365 LDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD 444 (480)
T ss_dssp HHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHH
Confidence 222221121111 11122222 367889999974 2356778888999999999 999999888
Q ss_pred HcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhcc
Q 002091 722 DAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT 758 (968)
Q Consensus 722 ~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~ 758 (968)
+-|+=..+++++.+ +++.++.+|+.++..+.
T Consensus 445 ~lg~K~~VM~Lm~h------~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 445 KTGGKADIMELLNH------SDSRVKYEALKATQAII 475 (480)
T ss_dssp HHSHHHHHHHHTSC------SSHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHhcC------CCHHHHHHHHHHHHHHH
Confidence 89999999999999 78999999999987664
No 148
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=7.5e-05 Score=60.20 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=39.5
Q ss_pred CcccccccccCCCCceecCCchh-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
++..|+||++-..|||.+||||. ||..|+.+ ...||+|++++..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 67899999999999999999999 99999984 3689999998854
No 149
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.44 E-value=0.012 Score=72.28 Aligned_cols=297 Identities=13% Similarity=0.143 Sum_probs=191.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCcc--HHHHHHcC
Q 002091 467 LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN--GLQMIKEG 544 (968)
Q Consensus 467 Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~--~~~i~~~g 544 (968)
++..+...+...+..++..+.++...+..- .....+.+..|.+.+.+.... +.|+.++..|+..... .....-.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 444455433334456666666664322111 111236777888887664333 8999999999943221 22222236
Q ss_pred ChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccC-CHHHHHHHHHHHHHhc
Q 002091 545 AVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT-GPNVQQRILQTFNALC 623 (968)
Q Consensus 545 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~-~~~~~~~al~~L~~L~ 623 (968)
.++.+++.+.+.. ..++..|-.++..|...-.. ......++.++..+..+ .-..+..++.++..|+
T Consensus 96 ~~~~~~~~~~dk~---~~v~~aa~~~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 96 LVPAICTNAGNKD---KEIQSVASETLISIVNAVNP----------VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp THHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSCG----------GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCc---hHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 7888888887665 66777777777776652111 11145678888877655 5678888999999998
Q ss_pred cCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHH
Q 002091 624 RSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASA 703 (968)
Q Consensus 624 ~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~A 703 (968)
... ...+-..+. ..+|.+-+.+.+..++++..|..++..++..-.+..+ ...+|.|++.+.+++ ....+
T Consensus 163 ~~~-~~~~~~~~~--~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~---~~~~~ 231 (986)
T 2iw3_A 163 DAA-KDQVALRMP--ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPT---EVPET 231 (986)
T ss_dssp HHS-HHHHHHHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTT---HHHHH
T ss_pred HHh-HHHHHHhcc--chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChh---hhHHH
Confidence 542 333333343 4788899999888899999999999888744443322 356899999998753 24556
Q ss_pred HHHHhcCCC-CH--HhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCC-CHHHHHHHHHcCChHHHH
Q 002091 704 MGILSKLPE-VP--QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT-NLEWQKRAAEAGVIPKLV 779 (968)
Q Consensus 704 l~~L~nL~~-~~--~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~-~~~~~~~~~~~g~i~~Lv 779 (968)
+..|+.-+. .. .-.-.+ .+|.|.+-|.. ....++..++-++-|+|.-. +|.....+ -...+|.|.
T Consensus 232 ~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~------~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~ 300 (986)
T 2iw3_A 232 VHLLGATTFVAEVTPATLSI----MVPLLSRGLNE------RETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLK 300 (986)
T ss_dssp HHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTS------SSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHH
T ss_pred HHHhhcCeeEeeecchhHHH----HHHHHHhhhcc------CcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHH
Confidence 777777655 11 111122 24666666665 45677889999999999883 45444444 456778877
Q ss_pred HHhhc-CChHHHHHHHHHHhhhc
Q 002091 780 QLLEY-GTTLTKEHAATSLARFS 801 (968)
Q Consensus 780 ~lL~~-~~~~v~~~Aa~aL~nl~ 801 (968)
+.... .+|++|..|..|+.-|.
T Consensus 301 ~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 301 SNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHHHHHH
Confidence 77764 48999999999888874
No 150
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.0001 Score=61.40 Aligned_cols=50 Identities=14% Similarity=0.247 Sum_probs=42.0
Q ss_pred CCcccccccccCC--CCceecCCc-----hhhhHHHHHHHHhc-CCCCCCCCCCcCCC
Q 002091 263 LQSFYCPITRDVM--VDPVETSSG-----QTFERSAIEKWFSD-GNNLCPLTMTVLDT 312 (968)
Q Consensus 263 ~~~~~cpi~~~~m--~dpv~~~~g-----~t~~r~~i~~~~~~-~~~~CP~t~~~l~~ 312 (968)
.++-.|+||++-+ .+|++.+|+ |.|-+.||.+|+.. +..+||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3567899999776 479999996 99999999999975 34799999998843
No 151
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.39 E-value=0.031 Score=70.46 Aligned_cols=490 Identities=11% Similarity=0.048 Sum_probs=241.9
Q ss_pred cChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc-CCCHHHHHHHHHHHHhccC------CchhHHHHHhCCc
Q 002091 391 RRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENLSF------SDDNVVQMAKANY 463 (968)
Q Consensus 391 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~------~~~n~~~i~~~g~ 463 (968)
.+++.+.+|-..|..+-++ ++++..+..+|. +.+..+|..|+.+|.+... .++.+..+ +...
T Consensus 19 ~d~~~r~~A~~~L~~~~~~----------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i-r~~l 87 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS----------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREEL-KQKI 87 (971)
T ss_dssp STTTC----CHHHHHTTTS----------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcC----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH-HHHH
Confidence 3444566666666665444 455666666774 5688999999999998742 22333333 3223
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC------CHHHHHHHHHHHHHhcCC----
Q 002091 464 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG------DIQMKKVAVKALRNLSSV---- 533 (968)
Q Consensus 464 v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~Ls~~---- 533 (968)
+..+...- .++..+|...+.+|..++..+-. .-.+.++.|+..++++ ++.....++.+|..++..
T Consensus 88 l~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~ 162 (971)
T 2x1g_F 88 LESIVRFA-GGPKIVLNRLCISLGAYIVHMLG----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVI 162 (971)
T ss_dssp HHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhcc
Confidence 33333322 24678888888888888543211 2367889999998875 567888899999888731
Q ss_pred -CccHH-HHHH--cCChHHHHH----HhcccCCCCc-----chHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHH
Q 002091 534 -PQNGL-QMIK--EGAVGPLVD----LLLHHSSSSS-----SLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFML 600 (968)
Q Consensus 534 -~~~~~-~i~~--~g~v~~Lv~----lL~~~~~~~~-----~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l 600 (968)
...+. .+.+ ...++.++. ++........ .+...++.++......... +. . .....++.+
T Consensus 163 ~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~i----p~--~--~~~~ll~~l 234 (971)
T 2x1g_F 163 HTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGY----TI--E--GCVTITAVL 234 (971)
T ss_dssp CCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCC----CG--G--GHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCc----Cc--c--ccccHHHHH
Confidence 11121 1111 123444444 3433321101 5777788877665431000 00 0 223455555
Q ss_pred HHhhc----------------cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhh-------ccCC---hh
Q 002091 601 FSLIN----------------LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLC-------EHDN---EN 654 (968)
Q Consensus 601 ~~ll~----------------~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll-------~~~~---~~ 654 (968)
.. +. ..++.+++.++.+|..+...+...+....+.. .++.++.+. ..++ ++
T Consensus 235 ~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~d~~~~~ 311 (971)
T 2x1g_F 235 LE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFV--LIKMFLDSLSEITKTEWKRENDNED 311 (971)
T ss_dssp HH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHH--HHHHHHHHHHHHHHHHSSSSCSCSH
T ss_pred Hh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHH--HHHHHHHhHHHHHHHHhcccccchH
Confidence 55 31 14678899999999999865432221112211 233333321 2334 36
Q ss_pred HHHHHHHHHHHhccCCChhHHH-----------HhhccccHHHHHHHhcc----CCCHHHHHHHHHHHhcCCC-C-----
Q 002091 655 VRANAVKLFCCLVDDGDEAIIR-----------EHVGQKCLETLVTIIQS----SHNEEEIASAMGILSKLPE-V----- 713 (968)
Q Consensus 655 v~~~a~~~L~~Ls~~~~~~~~~-----------~~~~~~~i~~Lv~lL~~----~~~~~~~~~Al~~L~nL~~-~----- 713 (968)
.....++.+..+...... ... ..+ ...++.|+.+... ..++++...++..+..++. .
T Consensus 312 ~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~ 389 (971)
T 2x1g_F 312 IIVHIYMLFVSSVERHST-LLLSGITSADPELSILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN 389 (971)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHHHHHHTCCHHHHHHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhccCcccccHHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 777777777776632211 111 000 1344455554433 2345567777766555432 0
Q ss_pred ----HHhHHHHHH--cCCHHHHHHHhhcCCCC----CCch-----hHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHH
Q 002091 714 ----PQFTQWLLD--AGALPIVLNFLKNGRQN----DPNR-----FQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKL 778 (968)
Q Consensus 714 ----~~~~~~l~~--~g~l~~Lv~lL~~~~~~----~~~~-----~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~L 778 (968)
......+.. ...++.++..+.-+... +..+ ...|..+..+|..++..........+ ++.+
T Consensus 390 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l 464 (971)
T 2x1g_F 390 DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAML 464 (971)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHH
Confidence 111111100 12334444444321110 0011 13555666666666654222222222 2333
Q ss_pred HHHhhc-----CChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHH
Q 002091 779 VQLLEY-----GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLV 853 (968)
Q Consensus 779 v~lL~~-----~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv 853 (968)
...+.+ .+...++.|..+++.++..- .......+- ..++.+.
T Consensus 465 ~~~l~~~~~~~~~w~~~eaal~~l~~iae~~-------------------------------~~~~~~~l~--~l~~~l~ 511 (971)
T 2x1g_F 465 DEAIADLQRHPTHWTKLEACIYSFQSVAEHF-------------------------------GGEEKRQIP--RLMRVLA 511 (971)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------------------------------------CHHH--HHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHhhc-------------------------------ChhhhHHHH--HHHHHHH
Confidence 334433 46688999999999987321 111111111 1233222
Q ss_pred hhcc-CCChhhhHHHHHHHHhhh-c-ccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhc-
Q 002091 854 RVLE-DPDHGACEASLDALVTLI-E-GERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYG- 929 (968)
Q Consensus 854 ~lL~-~~~~~v~~~al~aL~~L~-~-~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~- 929 (968)
.+.. +.++.++..+++++..++ . ..+. +... ..++.|+..++ +.|+..|++++.++... ....+.
T Consensus 512 ~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~-----~vl~~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p 580 (971)
T 2x1g_F 512 EIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIP-----PAINLLVRGLN---SSMSAQATLGLKELCRD--CQLQLKP 580 (971)
T ss_dssp HSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-----HHHHHHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHH
T ss_pred hcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHH-----HHHHHHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccc
Confidence 2322 347789999999999998 1 2111 1111 23555666662 78999999999999742 222221
Q ss_pred --ccCCchhhhhcccC--CchhhHHHHHHHHHH
Q 002091 930 --KSAQMPLVDLTQRG--NSSMKSLSARVLAHL 958 (968)
Q Consensus 930 --~~~~~~Lv~ll~~~--~~~~~~~A~~aL~~L 958 (968)
..-...|..++.++ +...+..+-.++..+
T Consensus 581 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 581 YADPLLNACHASLNTGRMKNSDSVRLMFSIGKL 613 (971)
T ss_dssp HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 11223355556653 344455554444443
No 152
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.38 E-value=0.0066 Score=76.51 Aligned_cols=394 Identities=12% Similarity=0.122 Sum_probs=212.8
Q ss_pred cCchHHHHHhhhcC--CHHHHHHHHHHHHHhcCC-----------CccHHHHHHcCChHHHHHHhcccCCCCcchHHHHH
Q 002091 502 GNVLGPLLHLVSRG--DIQMKKVAVKALRNLSSV-----------PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETA 568 (968)
Q Consensus 502 ~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~-----------~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~ 568 (968)
+|....|+.++.+. +..+|..|+-.|.|.... ++.-...++. .|+..+.+.+ ..++..+.
T Consensus 34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~---~~ir~~l~ 106 (960)
T 1wa5_C 34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP---NNLQVQIG 106 (960)
T ss_dssp TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC---HHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC---HHHHHHHH
Confidence 56777888888654 578999999999998621 1112222332 3444444433 67888888
Q ss_pred HHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCC----Chhh----HHHHHhhcCc
Q 002091 569 TAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP----SAGN----IKTTLTQCSA 640 (968)
Q Consensus 569 ~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~----~~~~----~~~~i~~~g~ 640 (968)
.+++.|+...-...- .+.++.++.+++++++..+..++.+|..++..- ...+ +...+.. .
T Consensus 107 ~~ia~ia~~d~p~~W----------p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~--~ 174 (960)
T 1wa5_C 107 EAISSIADSDFPDRW----------PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDV--F 174 (960)
T ss_dssp HHHHHHHHHHSTTTC----------TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHhhCccch----------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHH--H
Confidence 899999874322111 467889999998888888899999999998632 1112 2222221 2
Q ss_pred hHHHHHh-------hccCCh---------hHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-----CC---
Q 002091 641 IPVLVQL-------CEHDNE---------NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-----HN--- 696 (968)
Q Consensus 641 i~~Lv~l-------l~~~~~---------~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~--- 696 (968)
.+.++.+ +..... .+...++++++.+.....++.....+ ....+.+..+|... .+
T Consensus 175 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~ 253 (960)
T 1wa5_C 175 TAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDET 253 (960)
T ss_dssp HHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCccc
Confidence 3333332 333211 23344667777765322232221111 12234445555431 01
Q ss_pred ------HHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091 697 ------EEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 769 (968)
Q Consensus 697 ------~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~ 769 (968)
..++..++.+|..+.. ..+.-... -...++.+..++.+... ......++..++..+..++. .+..+..+
T Consensus 254 ~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~fl~~~~~--~~~~~~~~ 329 (960)
T 1wa5_C 254 EHASVLIKVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISN-QPKYDILVSKSLSFLTAVTR--IPKYFEIF 329 (960)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCS-CTTSHHHHHHHHHHHHHHHT--SHHHHGGG
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC-CcCcHHHHHHHHHHHHHHhC--cHhHHHHH
Confidence 2356677777777765 33322111 12345566666653211 11456788888888888775 33333222
Q ss_pred HHcCChH-----HHHHHhh---------cCC--------------hHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccC
Q 002091 770 AEAGVIP-----KLVQLLE---------YGT--------------TLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFS 821 (968)
Q Consensus 770 ~~~g~i~-----~Lv~lL~---------~~~--------------~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~ 821 (968)
...+.++ .++..+. .++ ...|..|...|..++..-
T Consensus 330 ~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~----------------- 392 (960)
T 1wa5_C 330 NNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKN----------------- 392 (960)
T ss_dssp CSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHC-----------------
T ss_pred cCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHc-----------------
Confidence 1111222 2222221 011 135666777777666211
Q ss_pred CCCCcccccCCCccCcccchHHhhcCChHHHH----hhcc------CCChhhhHHHHHHHHhhh-cccccchhhHHHHh-
Q 002091 822 PPPEIGCQVHGGLCGIESSFCLLEANAVRPLV----RVLE------DPDHGACEASLDALVTLI-EGERLQNGSKVLED- 889 (968)
Q Consensus 822 ~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv----~lL~------~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~- 889 (968)
...++++++ ..+. +.+...+++|+.++..++ .+.....+......
T Consensus 393 -----------------------~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~ 449 (960)
T 1wa5_C 393 -----------------------EVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNL 449 (960)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTT
T ss_pred -----------------------chhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence 011233333 3344 456789999999999998 22111101000000
Q ss_pred cCcHH----HHHHHhcCC---ChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHhhc
Q 002091 890 ANAID----RMVRFLSSP---SPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVL 961 (968)
Q Consensus 890 ~~~i~----~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~ 961 (968)
....+ .+...+.++ .+.++..|+|++.++...- ...+-......++..+.+.+..++..|+.+|..+...
T Consensus 450 ~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 450 LNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 01111 233334455 8999999999999986531 1122222344577777787888999999999998764
No 153
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.30 E-value=0.22 Score=62.56 Aligned_cols=456 Identities=13% Similarity=0.116 Sum_probs=228.1
Q ss_pred cChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc-CCCHHHHHHHHHHHHhccC------CchhHHHHHhCCc
Q 002091 391 RRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENLSF------SDDNVVQMAKANY 463 (968)
Q Consensus 391 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~------~~~n~~~i~~~g~ 463 (968)
.+++.+.+|-..|..+-++ +++++.+..+|. +.+..+|..|+.+|.+... .++.+..+.+ ..
T Consensus 37 ~~~~~r~~A~~~L~~~~~~----------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~-~l 105 (963)
T 2x19_B 37 PNIENKNLAQKWLMQAQVS----------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA-QL 105 (963)
T ss_dssp CCHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHhcC----------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH-HH
Confidence 3556677776677666443 566777777774 5688999999999998742 2233443322 22
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhc-----CCHHHHHHHHHHHHHhcC-C--C-
Q 002091 464 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR-----GDIQMKKVAVKALRNLSS-V--P- 534 (968)
Q Consensus 464 v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~Ls~-~--~- 534 (968)
+..+... ..++..++...+.+|..++..+-.. .-.+.++.|+..+++ +++.....++.+|..++. . .
T Consensus 106 l~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 106 FTQITRF-ASGSKIVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhccc
Confidence 3333221 1246788888888888875432100 025788999998876 356678888888888872 1 1
Q ss_pred --ccHHHHHHc---CChHH----HHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhc
Q 002091 535 --QNGLQMIKE---GAVGP----LVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN 605 (968)
Q Consensus 535 --~~~~~i~~~---g~v~~----Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~ 605 (968)
..+....+. ..++. +..++.+... ...+...++.++......+. ........++.++..+
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~-~~~~~~~~l~~l~~wi~~~~---------~~~~~~~ll~~l~~~l- 250 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS-PSCVRQKVLKCFSSWVQLEV---------PLQDCEALIQAAFAAL- 250 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTC-CHHHHHHHHHHHHHHHTSSC---------CGGGTHHHHHHHHHHT-
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHcCCC---------CcccchHHHHHHHHHh-
Confidence 111111111 12333 3444443321 12367777777754433111 1222355666666666
Q ss_pred cCCHHHHHHHHHHHHHhccCCChhhHHHHHhh-----cCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHH----
Q 002091 606 LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQ-----CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIR---- 676 (968)
Q Consensus 606 ~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~-----~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~---- 676 (968)
.++.++..++.++..+............+.. .+..+.+......++.......+.++..+..... ....
T Consensus 251 -~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~-~~l~~~~~ 328 (963)
T 2x19_B 251 -QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHS-RALLDQVE 328 (963)
T ss_dssp -TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHHHHCGG
T ss_pred -CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH-HHHHcCcc
Confidence 3678889999999999865432221111110 0111222222334455666666677766652211 1110
Q ss_pred --HhhccccHHHHHHHhcc----CCCHHHHHHHHHHHhcCCC-----CH---HhHHHHHH---cCCHHHHHHHhhcCCCC
Q 002091 677 --EHVGQKCLETLVTIIQS----SHNEEEIASAMGILSKLPE-----VP---QFTQWLLD---AGALPIVLNFLKNGRQN 739 (968)
Q Consensus 677 --~~~~~~~i~~Lv~lL~~----~~~~~~~~~Al~~L~nL~~-----~~---~~~~~l~~---~g~l~~Lv~lL~~~~~~ 739 (968)
..+ ...++.++.+... ..++++...++.....++. .. ........ ...++.++..+..+...
T Consensus 329 ~~~~~-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~ 407 (963)
T 2x19_B 329 HWQSF-LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE 407 (963)
T ss_dssp GHHHH-HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred chHHH-HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 000 1334444444443 1223344444444333322 10 11111111 01233444434221100
Q ss_pred ----CCch-----hHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHh----hcCChHHHHHHHHHHhhhcccCCC
Q 002091 740 ----DPNR-----FQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLL----EYGTTLTKEHAATSLARFSKNSLG 806 (968)
Q Consensus 740 ----~~~~-----~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL----~~~~~~v~~~Aa~aL~nl~~~s~~ 806 (968)
+..+ ...+..+..+|..++.....+... -+++.+...+ .+.+...++.+.++++.++..-.
T Consensus 408 ~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~- 481 (963)
T 2x19_B 408 EYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLS-----NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETID- 481 (963)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-----HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCC-
T ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHH-----HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcC-
Confidence 0000 112344444444444211111111 1223344444 34577889999999999983211
Q ss_pred CCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHH
Q 002091 807 LSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKV 886 (968)
Q Consensus 807 l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~ 886 (968)
......+. .+++.|..+. ++++.++..+++++..++.. .......
T Consensus 482 ------------------------------~~~~~~l~--~l~~~l~~l~-~~~~~vr~~~~~~l~~~~~~--l~~~~~~ 526 (963)
T 2x19_B 482 ------------------------------VNYSDVVP--GLIGLIPRIS-ISNVQLADTVMFTIGALSEW--LADHPVM 526 (963)
T ss_dssp ------------------------------SSCCSHHH--HHHHHGGGSC-CCSHHHHHHHHHHHHHTHHH--HHHCHHH
T ss_pred ------------------------------chhhHHHH--HHHHHHHhCC-CCcHHHHHHHHHHHHHHHHH--HHhCHHH
Confidence 10111111 1333333332 35777999999999998811 0011111
Q ss_pred HHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 002091 887 LEDANAIDRMVRFLSSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 887 i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 920 (968)
+ ...++.|...+.+ +.|+..|+.++.++..
T Consensus 527 l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 527 I--NSVLPLVLHALGN--PELSVSSVSTLKKICR 556 (963)
T ss_dssp H--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhCC--chHHHHHHHHHHHHHH
Confidence 1 2567778877754 8999999999999974
No 154
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.28 E-value=3.8e-05 Score=68.84 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=0.4
Q ss_pred cccccccccCCCCcee------------------cCCchhhhHHHHHHHHhcCCCCCCCCCCcCC
Q 002091 265 SFYCPITRDVMVDPVE------------------TSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~------------------~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~ 311 (968)
+=.|+||++-|.+|.+ .+|||.|.+.||.+|+.. +.+||+|++++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 3479999999988532 489999999999999965 679999998753
No 155
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.26 E-value=0.033 Score=68.27 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=185.1
Q ss_pred HHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCC-ChhhHHHHHhhcCchH
Q 002091 564 REETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP-SAGNIKTTLTQCSAIP 642 (968)
Q Consensus 564 ~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~-~~~~~~~~i~~~g~i~ 642 (968)
+..++..+.++........ .+. .+.+..+...+...... +.++.++..+|... ....+...+. +.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~ 98 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEH-------DVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVP 98 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSS-------SCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHH
T ss_pred HHHHHHHHHHHHhcccccc-------ccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHH
Confidence 4556666666654331111 222 36667777776654333 88999999999542 2223333444 4688
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHH
Q 002091 643 VLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLL 721 (968)
Q Consensus 643 ~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~ 721 (968)
.++..+.+....|+.+|..++..+...-++... ...++.|+..|.+......+..|+.++..|+. .++... ..
T Consensus 99 ~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~-~~ 172 (986)
T 2iw3_A 99 AICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA-LR 172 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH-HH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH-Hh
Confidence 888888888889999988888877744444332 45789999999887788999999999999997 443222 22
Q ss_pred HcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCC-CCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhh
Q 002091 722 DAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP-TNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARF 800 (968)
Q Consensus 722 ~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 800 (968)
=...+|.+.+.+.+ ...+++..|..++..+|.. .|.++ ...+|.|++.+.+.+. + ..+...|+.-
T Consensus 173 ~~~~~p~~~~~~~d------~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~-~-~~~~~~l~~~ 238 (986)
T 2iw3_A 173 MPELIPVLSETMWD------TKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE-V-PETVHLLGAT 238 (986)
T ss_dssp HHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH-H-HHHHHHHTTC
T ss_pred ccchhcchHhhccc------CcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh-h-HHHHHHhhcC
Confidence 24567888888888 7789999999999888875 35554 3568999999987643 3 2333333322
Q ss_pred cccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccc
Q 002091 801 SKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGER 879 (968)
Q Consensus 801 ~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~ 879 (968)
+. .+.+ ....| +=.++.|.+-|......+...++..+.|++ --.+
T Consensus 239 tf-----v~~v---------------------------~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 239 TF-----VAEV---------------------------TPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp CC-----CSCC---------------------------CHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred ee-----Eeee---------------------------cchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 21 0000 00000 013455556666677778888999999998 2222
Q ss_pred cchhhHHHHhcCcHHHHHHHh-cCCChHHHHHHHHHHHHHhc
Q 002091 880 LQNGSKVLEDANAIDRMVRFL-SSPSPKLQEKALDSVERIFR 920 (968)
Q Consensus 880 ~~~~~~~i~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 920 (968)
.......+ ...++.+.+.. ...+|++++.|..++..|.+
T Consensus 285 ~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 285 PQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 22222222 23466666666 56789999988888888754
No 156
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00032 Score=73.12 Aligned_cols=184 Identities=8% Similarity=0.126 Sum_probs=124.2
Q ss_pred chhHHHHHHHHHHhh-ccCCCCHHHHHHHHH-cCChHHHHHHh-hcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 002091 742 NRFQVVENAVGALRR-FTAPTNLEWQKRAAE-AGVIPKLVQLL-EYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFW 818 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~-L~~~~~~~~~~~~~~-~g~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~ 818 (968)
.++.-|..++..|.. +..+ .++....-.+ ..++..|...+ .+.+..++..|+.+|+.++..-.+ .
T Consensus 28 ~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~--~--------- 95 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT--P--------- 95 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT--T---------
T ss_pred CCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--c---------
Confidence 567889999999999 8643 2221100000 13466778888 678899999999999999842210 0
Q ss_pred ccCCCCCcccccCCCccCcccchH-HhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHH
Q 002091 819 CFSPPPEIGCQVHGGLCGIESSFC-LLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRM 896 (968)
Q Consensus 819 ~~~~~~~~~c~~h~~~c~~~~~~~-l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L 896 (968)
.|. =...-.+++++..+.+..+.|+.++..||.++. .-. +....-.=...++.|
T Consensus 96 ---------------------~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~---~~~~~~~l~~ll~~l 151 (249)
T 2qk1_A 96 ---------------------GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD---PLASSGRNEDMLKDI 151 (249)
T ss_dssp ---------------------TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC---TTCTTCTTHHHHHHH
T ss_pred ---------------------cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc---ccccCCcHHHHHHHH
Confidence 010 011236889999999999999999999999988 211 000000001256778
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhcChh-----hHHHhcccCCchhhhhcccCCchhhHHHHHHHHHHhhc
Q 002091 897 VRFLSSPSPKLQEKALDSVERIFRLPE-----FKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVL 961 (968)
Q Consensus 897 ~~ll~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~ 961 (968)
...+.+.++.+++.++..|.+++.... +...+.....+.|..++.+.++.+|..|..+|..+.+.
T Consensus 152 ~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 152 LEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999974322 22222134456788999999999999999998887543
No 157
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.22 E-value=0.17 Score=63.64 Aligned_cols=468 Identities=10% Similarity=0.045 Sum_probs=234.7
Q ss_pred chhHHHHHHhhcc--ChHHHHHHHHHHHHhcc------ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccC
Q 002091 379 DDAVESIVRSLGR--RIEERKLAVALLLELST------CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSF 450 (968)
Q Consensus 379 ~~~v~~lv~~L~~--~~~~~~~A~~~L~~Ls~------~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~ 450 (968)
.++...+...|.. +...+.-|+..|.+.-+ .++.+..|.+ ..+..+...- .+...++...+.+|..+..
T Consensus 38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~--~ll~~l~~~~-~~~~~vr~kl~~~la~i~~ 114 (971)
T 2x1g_F 38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQ--KILESIVRFA-GGPKIVLNRLCISLGAYIV 114 (971)
T ss_dssp THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHH--HHHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHH--HHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 3445555555533 45667778888876533 2344555544 3444444432 3457888888888888864
Q ss_pred CchhHHHHHhCCchHHHHHHHhcC------CHHHHHHHHHHHHHhccC-----ch-hhHHHhh--cCchHHHH----Hhh
Q 002091 451 SDDNVVQMAKANYFKHLLQRLSAG------PESVKMRMATTLAEMELT-----DH-HKASLLE--GNVLGPLL----HLV 512 (968)
Q Consensus 451 ~~~n~~~i~~~g~v~~Lv~~L~~~------~~~~~~~aa~~L~~L~~~-----~~-~~~~i~~--~g~i~~Lv----~lL 512 (968)
.+-. .-.+.++.++..++++ ++...+.+..+|..+... +. .+..+.+ ...++.++ .++
T Consensus 115 ~~~p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l 190 (971)
T 2x1g_F 115 HMLG----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYL 190 (971)
T ss_dssp HTTC----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred Hccc----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 1235677888888775 456677777777766421 11 1111111 12234443 444
Q ss_pred hc-CCH-------HHHHHHHHHHHHhcC---CCccHHHHHHcCChHHHHHHhc-----------cc--CCCCcchHHHHH
Q 002091 513 SR-GDI-------QMKKVAVKALRNLSS---VPQNGLQMIKEGAVGPLVDLLL-----------HH--SSSSSSLREETA 568 (968)
Q Consensus 513 ~~-~~~-------~~~~~a~~aL~~Ls~---~~~~~~~i~~~g~v~~Lv~lL~-----------~~--~~~~~~~~~~a~ 568 (968)
.. .++ .++..++.++..... .+.. .....++.+.. |. ++ ..+.+++++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 265 (971)
T 2x1g_F 191 KLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCL 265 (971)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHH
T ss_pred hcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHH
Confidence 32 122 678888888876443 2222 22334555555 31 00 001267889999
Q ss_pred HHHHHhhcCcccccCCCCccccccchhHHHHHHHh-------hccCCH---HHHHHHHHHHHHhccCCChhhHH------
Q 002091 569 TAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSL-------INLTGP---NVQQRILQTFNALCRSPSAGNIK------ 632 (968)
Q Consensus 569 ~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~l-------l~~~~~---~~~~~al~~L~~L~~~~~~~~~~------ 632 (968)
.+|..+...+...+. ...+ ...++.++.+ +...+. +....+++.+..++... ...+.
T Consensus 266 ~~l~~i~~~~~~~~~----~~~~--~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~ 338 (971)
T 2x1g_F 266 KTMVNIIIQPDCHNY----PKTA--FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH-STLLLSGITSA 338 (971)
T ss_dssp HHHHHHHHCSGGGGC----HHHH--HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHT-HHHHHHHHHTC
T ss_pred HHHHHHHcCcccccc----HHHH--HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-HHHHHHHhccC
Confidence 999999875332111 0011 1222233222 123342 66666777777665320 11111
Q ss_pred -----HHHhhcCchHHHHHhhcc-----CChhHHHHHHHHHHHhccCC-------ChhHHHHhhc---cccHHHHHHHhc
Q 002091 633 -----TTLTQCSAIPVLVQLCEH-----DNENVRANAVKLFCCLVDDG-------DEAIIREHVG---QKCLETLVTIIQ 692 (968)
Q Consensus 633 -----~~i~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~Ls~~~-------~~~~~~~~~~---~~~i~~Lv~lL~ 692 (968)
..+. ..++.|+.+... .++++...++..+..++... .......... ...++.++..+.
T Consensus 339 ~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 416 (971)
T 2x1g_F 339 DPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSE 416 (971)
T ss_dssp CHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 245555655533 47788999998887775210 0011111111 134444444443
Q ss_pred cCCC-------H-------HHHHHHHHHHhcCCC--CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhh
Q 002091 693 SSHN-------E-------EEIASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRR 756 (968)
Q Consensus 693 ~~~~-------~-------~~~~~Al~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~ 756 (968)
...+ . ..+..+..+|..++. .+.....+ ++.+-..+.+.. ..+.+...++.++.+++.
T Consensus 417 ~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~-~~~~~w~~~eaal~~l~~ 490 (971)
T 2x1g_F 417 QPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQ-RHPTHWTKLEACIYSFQS 490 (971)
T ss_dssp CCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHH-HCTTCCHHHHHHHHHHHH
T ss_pred CCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhcc-CCCCcHHHHHHHHHHHHH
Confidence 2221 1 123344444444433 11211111 122222232200 001345679999999999
Q ss_pred ccCCCCHHHHHHHHHcCChHHHHHHh---h--cCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccC
Q 002091 757 FTAPTNLEWQKRAAEAGVIPKLVQLL---E--YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVH 831 (968)
Q Consensus 757 L~~~~~~~~~~~~~~~g~i~~Lv~lL---~--~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h 831 (968)
++.+...... ..++.++.++ . +.++.++..++++++.++..-..
T Consensus 491 iae~~~~~~~------~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~------------------------- 539 (971)
T 2x1g_F 491 VAEHFGGEEK------RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME------------------------- 539 (971)
T ss_dssp TTTC------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------------------------
T ss_pred HHhhcChhhh------HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-------------------------
Confidence 9886222211 2233333333 2 34789999999999999842110
Q ss_pred CCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC--CChHHH
Q 002091 832 GGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS--PSPKLQ 908 (968)
Q Consensus 832 ~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~--~~~~v~ 908 (968)
.++. + ..+++.|+..| + +.|+..|+.|+.+++ +.. ...... =.+.++.+..++.. .+...+
T Consensus 540 ----~~~~---l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~--~~l~p~--~~~ll~~l~~~l~~~~~~~~~~ 603 (971)
T 2x1g_F 540 ----NPAY---I--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ--LQLKPY--ADPLLNACHASLNTGRMKNSDS 603 (971)
T ss_dssp -------C---H--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH--HHHHHH--HHHHHHHHHHHHHSTTSCHHHH
T ss_pred ----CHHH---H--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH--Hhcccc--HHHHHHHHHHHHcCCCCChHHH
Confidence 0001 1 12566666666 2 789999999999999 221 011111 12345566677755 357788
Q ss_pred HHHHHHHHHHhc
Q 002091 909 EKALDSVERIFR 920 (968)
Q Consensus 909 ~~a~~~L~~l~~ 920 (968)
..+..++..++.
T Consensus 604 ~~~~~ai~~i~~ 615 (971)
T 2x1g_F 604 VRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888865
No 158
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.19 E-value=0.0084 Score=63.38 Aligned_cols=150 Identities=10% Similarity=0.059 Sum_probs=117.4
Q ss_pred HHhhhcCCHHHHHHHHHHHHH-hcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCc
Q 002091 509 LHLVSRGDIQMKKVAVKALRN-LSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTP 587 (968)
Q Consensus 509 v~lL~~~~~~~~~~a~~aL~~-Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~ 587 (968)
++-|.+++.+.++.++.-|.. +..+......++..+|+..|+.+..... ...+.+++.+|.+|.....+...
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~---gN~q~Y~L~AL~~LM~~v~Gm~g---- 196 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD---HNYQSYILRALGQLMLFVDGMLG---- 196 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC---HHHHHHHHHHHHHHTTSHHHHHH----
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC---hHHHHHHHHHHHHHHhccccccc----
Confidence 444566777888889999998 6678899999999999999999998765 78899999999999987555443
Q ss_pred cccccchhHHHHHHHhhccCCHHHHHHHHHHHHHhccCCC-hh-hHHHHH----hhcC--chHHHHHhhc---cCChhHH
Q 002091 588 VTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPS-AG-NIKTTL----TQCS--AIPVLVQLCE---HDNENVR 656 (968)
Q Consensus 588 ~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~-~~-~~~~~i----~~~g--~i~~Lv~ll~---~~~~~v~ 656 (968)
++....+|..+..++++..+.+.+.++..|..++...+ +. -+.+.+ .+.| -.+.|+.++. ..+.+++
T Consensus 197 --vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 197 --VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp --HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred --hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 66678899999999999999999999999999986532 21 111111 2222 3778999997 6789999
Q ss_pred HHHHHHHHHhc
Q 002091 657 ANAVKLFCCLV 667 (968)
Q Consensus 657 ~~a~~~L~~Ls 667 (968)
.+|...+-.+-
T Consensus 275 ~~amtLIN~lL 285 (339)
T 3dad_A 275 VYTVTLINKTL 285 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776665
No 159
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.14 E-value=0.089 Score=66.83 Aligned_cols=208 Identities=15% Similarity=0.125 Sum_probs=111.2
Q ss_pred ccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhh-cCCCHHHHHHHHHHHHhccC------CchhHHHHHhCC
Q 002091 390 GRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMA-SSDDNQASRDAQELLENLSF------SDDNVVQMAKAN 462 (968)
Q Consensus 390 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~s~~~~~~~~a~~~L~~Ls~------~~~n~~~i~~~g 462 (968)
+.+.+.+.+|-..|..+.+++ +++..+..+| ++.+..+|..|+..|.+... .++.+..+ +..
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i-r~~ 95 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI-RNF 95 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-HHH
T ss_pred CCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH-HHH
Confidence 445556777777777664443 4444455555 36688999999999998742 22333333 222
Q ss_pred chHHHHHHHhcC-----CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC--C--
Q 002091 463 YFKHLLQRLSAG-----PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS--V-- 533 (968)
Q Consensus 463 ~v~~Lv~~L~~~-----~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~--~-- 533 (968)
.+..+...-..+ +..++...+.++..++..+-.. .-++.++.|+.+++ .++..+..++.+|..|+. .
T Consensus 96 ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~ 171 (1049)
T 3m1i_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDF 171 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHh
Confidence 233332221111 2566777777777775432100 12578899999986 566678888888888872 1
Q ss_pred -Cc----cH-----HHHHHc--CChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHH
Q 002091 534 -PQ----NG-----LQMIKE--GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLF 601 (968)
Q Consensus 534 -~~----~~-----~~i~~~--g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~ 601 (968)
.+ .+ ..+.+. .+++.+..++.+.. ...++..++.++.+....-.. ..+.....+..+.
T Consensus 172 ~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~--~~~~~~~aL~~l~~~l~wi~~--------~~~~~~~ll~~l~ 241 (1049)
T 3m1i_C 172 SAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS--SSSLIVATLESLLRYLHWIPY--------RYIYETNILELLS 241 (1049)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTTSCT--------HHHHSSSHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhCCH--------HHHhhhhHHHHHH
Confidence 11 11 222221 12333445554432 256788888888776542110 0111123344433
Q ss_pred -HhhccCCHHHHHHHHHHHHHhcc
Q 002091 602 -SLINLTGPNVQQRILQTFNALCR 624 (968)
Q Consensus 602 -~ll~~~~~~~~~~al~~L~~L~~ 624 (968)
.++ .++.++..++.+|..+..
T Consensus 242 ~~~l--~~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 242 TKFM--TSPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp THHH--HSHHHHHHHHHHHHHHHH
T ss_pred HHhC--CCHhHHHHHHHHHHHHHh
Confidence 122 256666666666665553
No 160
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.13 E-value=1.1 Score=56.26 Aligned_cols=462 Identities=13% Similarity=0.109 Sum_probs=231.7
Q ss_pred chhHHHHHHhhcc--ChHHHHHHHHHHHHhcc------ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccC
Q 002091 379 DDAVESIVRSLGR--RIEERKLAVALLLELST------CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSF 450 (968)
Q Consensus 379 ~~~v~~lv~~L~~--~~~~~~~A~~~L~~Ls~------~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~ 450 (968)
.++...+...|.. +...+.-|+..|.+.-+ .++.+..|.+ ..+..+... ..+...++...+.++..++.
T Consensus 56 p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~--~ll~~l~~~-~~~~~~ir~kl~~~la~i~~ 132 (963)
T 2x19_B 56 PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA--QLFTQITRF-ASGSKIVLTRLCVALASLAL 132 (963)
T ss_dssp TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH--HHHHHHHHT-TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 3455556666643 45677788888886543 2334545544 234444432 22457888888888888764
Q ss_pred C--chhHHHHHhCCchHHHHHHHhc-----CCHHHHHHHHHHHHHhccC------c-hhhHHHhh--cCchHHH----HH
Q 002091 451 S--DDNVVQMAKANYFKHLLQRLSA-----GPESVKMRMATTLAEMELT------D-HHKASLLE--GNVLGPL----LH 510 (968)
Q Consensus 451 ~--~~n~~~i~~~g~v~~Lv~~L~~-----~~~~~~~~aa~~L~~L~~~------~-~~~~~i~~--~g~i~~L----v~ 510 (968)
. +++ -.+.++.|+..+++ +++.....+..+|..+... + +.|..+.+ ...++.+ ..
T Consensus 133 ~~~p~~-----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~ 207 (963)
T 2x19_B 133 SMMPDA-----WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQ 207 (963)
T ss_dssp HHTTTT-----STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHH
T ss_pred HhCccc-----cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222 13567788888865 2555667777777766421 0 01111111 1223444 34
Q ss_pred hhhcC--CHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCcc
Q 002091 511 LVSRG--DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPV 588 (968)
Q Consensus 511 lL~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~ 588 (968)
++.+. +..+...+++++.......... ......++.+++.+.. ++++..|+.++..+......... .
T Consensus 208 ~l~~~~~~~~~~~~~l~~l~~wi~~~~~~--~~~~~ll~~l~~~l~~-----~~~~~~a~~~l~~i~~~~~~~~~----~ 276 (963)
T 2x19_B 208 LLQQPSSPSCVRQKVLKCFSSWVQLEVPL--QDCEALIQAAFAALQD-----SELFDSSVEAIVNAISQPDAQRY----V 276 (963)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHTSSCCG--GGTHHHHHHHHHHTTS-----TTTHHHHHHHHHHHHTCTTGGGC----H
T ss_pred HHhCCCCchHHHHHHHHHHHHHHcCCCCc--ccchHHHHHHHHHhCC-----chHHHHHHHHHHHHHcccccccC----H
Confidence 44332 2247777888886544311110 0112345556666632 67899999999999874322111 0
Q ss_pred ccccchhHHHHHHH-------hhccCCHHHHHHHHHHHHHhccCCChhhHH------HHHhhcCchHHHHHhhcc-----
Q 002091 589 TLLESDKEIFMLFS-------LINLTGPNVQQRILQTFNALCRSPSAGNIK------TTLTQCSAIPVLVQLCEH----- 650 (968)
Q Consensus 589 ~il~~~~~i~~l~~-------ll~~~~~~~~~~al~~L~~L~~~~~~~~~~------~~i~~~g~i~~Lv~ll~~----- 650 (968)
..+ ...++.++. .+...+.+.....++.+..++... ...+. ..+. ..+..++.+...
T Consensus 277 ~~~--~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~-~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~ 351 (963)
T 2x19_B 277 NTL--LKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENH-SRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYP 351 (963)
T ss_dssp HHH--HHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTT
T ss_pred HHH--HHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-HHHHHcCccchHHHH--HHHHHHHHHHcCCCCCC
Confidence 000 011121221 122345566666666666654210 00000 1111 234555555554
Q ss_pred CChhHHHHHHHHHHHhccCC---Ch---hHHHHhhc---cccHHHHHHHhccCCCH--------------HHHHHHHHHH
Q 002091 651 DNENVRANAVKLFCCLVDDG---DE---AIIREHVG---QKCLETLVTIIQSSHNE--------------EEIASAMGIL 707 (968)
Q Consensus 651 ~~~~v~~~a~~~L~~Ls~~~---~~---~~~~~~~~---~~~i~~Lv~lL~~~~~~--------------~~~~~Al~~L 707 (968)
.++.+...++..+..++... .. ........ ...++.++.-+....+. +.+..+..+|
T Consensus 352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L 431 (963)
T 2x19_B 352 VNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL 431 (963)
T ss_dssp TTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHH
Confidence 34566666666666655210 00 01111111 12234444444322111 0122333334
Q ss_pred hcCCCCHHhHHHHHHcCCHHHHHH----HhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHh-
Q 002091 708 SKLPEVPQFTQWLLDAGALPIVLN----FLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLL- 782 (968)
Q Consensus 708 ~nL~~~~~~~~~l~~~g~l~~Lv~----lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL- 782 (968)
..++. +.....++.+.. .+... ....+...++.++.+++.++.+..+.. ...++.++..+
T Consensus 432 ~~~~~-------~~~~~~l~~~~~~l~~~l~~~--~~~~~w~~~eaal~al~~i~~~~~~~~------~~~l~~l~~~l~ 496 (963)
T 2x19_B 432 MYVYE-------MLGAELLSNLYDKLGRLLTSS--EEPYSWQHTEALLYGFQSIAETIDVNY------SDVVPGLIGLIP 496 (963)
T ss_dssp HHHHH-------HHTHHHHHHHHHHHHHHHHTC--CCSCCHHHHHHHHHHHHHHTTSCCSSC------CSHHHHHHHHGG
T ss_pred HHHHH-------HccHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHhhcCchh------hHHHHHHHHHHH
Confidence 33332 001112233333 33211 011456789999999999998632211 12233344333
Q ss_pred --hcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCC
Q 002091 783 --EYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD 860 (968)
Q Consensus 783 --~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~ 860 (968)
.++++.++..++++++.++..-. .+.. .-..+++.|+..|.+
T Consensus 497 ~l~~~~~~vr~~~~~~l~~~~~~l~--------------------------------~~~~--~l~~vl~~l~~~l~~-- 540 (963)
T 2x19_B 497 RISISNVQLADTVMFTIGALSEWLA--------------------------------DHPV--MINSVLPLVLHALGN-- 540 (963)
T ss_dssp GSCCCSHHHHHHHHHHHHHTHHHHH--------------------------------HCHH--HHTTTHHHHHHHTTC--
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHH--------------------------------hCHH--HHHHHHHHHHHHhCC--
Confidence 23578999999999999973110 0001 112477778887754
Q ss_pred hhhhHHHHHHHHhhh-cc-cccchhhHHHHhcCcHHHHHHHhcC--CChHHHHHHHHHHHHHhc
Q 002091 861 HGACEASLDALVTLI-EG-ERLQNGSKVLEDANAIDRMVRFLSS--PSPKLQEKALDSVERIFR 920 (968)
Q Consensus 861 ~~v~~~al~aL~~L~-~~-~~~~~~~~~i~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 920 (968)
+.|+..|+.||.+++ +. ....+... +.++.+..++.. .+...+..+..++..+..
T Consensus 541 ~~V~~~A~~al~~l~~~~~~~l~p~~~-----~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 541 PELSVSSVSTLKKICRECKYDLPPYAA-----NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGCTTTHH-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 789999999999999 22 11112211 234455566654 356788888888888864
No 161
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.08 E-value=0.013 Score=61.85 Aligned_cols=147 Identities=17% Similarity=0.134 Sum_probs=108.9
Q ss_pred hhcCCCHHHHHHHHHHHHh-ccCCchhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh-hcCchH
Q 002091 429 MASSDDNQASRDAQELLEN-LSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL-EGNVLG 506 (968)
Q Consensus 429 lL~s~~~~~~~~a~~~L~~-Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~-~~g~i~ 506 (968)
-|.+.+...+..++..|.. ++.+..-...++..+++..|+.+...++...+..+..+|..|-........+. ....|.
T Consensus 126 kL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~ 205 (339)
T 3dad_A 126 KLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQ 205 (339)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHH
Confidence 3445567777788888887 55667778899999999999999999999999999999999976655554444 577899
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhcCCC-ccHHHHHHc--------C--ChHHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 507 PLLHLVSRGDIQMKKVAVKALRNLSSVP-QNGLQMIKE--------G--AVGPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 507 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~--------g--~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
.+..++.+.+..+.+.|+..|..++.+. .+...+.++ | -.+.|+.+|.+.+..+.+++.+|...+-.+.
T Consensus 206 ~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 206 WLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 9999999888999999999999999644 354443332 1 2567777776433223666666666554443
No 162
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.77 E-value=1.4 Score=55.21 Aligned_cols=217 Identities=13% Similarity=0.089 Sum_probs=122.8
Q ss_pred HHHHHHhh-ccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhh-cCCCHHHHHHHHHHHHhccC-----Cchh
Q 002091 382 VESIVRSL-GRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMA-SSDDNQASRDAQELLENLSF-----SDDN 454 (968)
Q Consensus 382 v~~lv~~L-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~s~~~~~~~~a~~~L~~Ls~-----~~~n 454 (968)
++.++..+ +++.+.+.+|-..|..+-+++ +++..+..+| ++.++.++..|+..|.+... -++.
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 44444443 334456667767776665443 4444444455 36688999999999988742 1222
Q ss_pred HHHHHhCCchHHHHHHHhcC-----CHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHH
Q 002091 455 VVQMAKANYFKHLLQRLSAG-----PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRN 529 (968)
Q Consensus 455 ~~~i~~~g~v~~Lv~~L~~~-----~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 529 (968)
.....+...+..+...-..+ ...++...+.++..++..+-. -.-.+.++.|+.++++ ++......+.+|..
T Consensus 88 ~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p---~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~ 163 (1023)
T 4hat_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSSS-SVNVCENNMIVLKL 163 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh---hhchHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 22233333444444332211 234555566666666432200 0126788899998864 45567777888877
Q ss_pred hcCC---------CccHH-----HHHHc--CChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccc
Q 002091 530 LSSV---------PQNGL-----QMIKE--GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLES 593 (968)
Q Consensus 530 Ls~~---------~~~~~-----~i~~~--g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~ 593 (968)
|+.. ...|. .+.+. .+++.+..+|.... .+.+...++.++.....--. ...+.+
T Consensus 164 L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~--~~~l~~~~L~~l~s~l~WI~--------i~~i~~ 233 (1023)
T 4hat_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA--SSSLIVATLESLLRYLHWIP--------YRYIYE 233 (1023)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTTSC--------THHHHS
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhCC--------HHHhcc
Confidence 6621 11121 11221 23344445554432 26777888888887765211 123344
Q ss_pred hhHHHHHH-HhhccCCHHHHHHHHHHHHHhcc
Q 002091 594 DKEIFMLF-SLINLTGPNVQQRILQTFNALCR 624 (968)
Q Consensus 594 ~~~i~~l~-~ll~~~~~~~~~~al~~L~~L~~ 624 (968)
...++.++ .++. ++.++..|+.+|..+.+
T Consensus 234 ~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 234 TNILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp SSHHHHHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 56777777 6663 68899999999999886
No 163
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.75 E-value=0.055 Score=54.56 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHH
Q 002091 698 EEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 777 (968)
Q Consensus 698 ~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~ 777 (968)
.-...|+..|-.++.+++.+..+++++..-.|-.+|+..+.+. +-+.+|-.++++++.+....++++...+.+.+++|.
T Consensus 71 nRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r-~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTR-PFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSH-HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCC-cchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 3456788888888889999999999999888888888755433 557899999999999998878999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 778 LVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 778 Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
..+.+..|+...|.-|...+..+-.
T Consensus 150 CLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988863
No 164
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.52 E-value=0.00088 Score=56.64 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=53.0
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHHhhhcc
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDLCQQRD 367 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~~~~~~ 367 (968)
..++||+|+..| +|+.+..++++ |..|++|...+ .+||.++.++...+..++. +|+. |+.|...+.
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~~~~l~pn~-~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS--PTDPFNRQMLTESMLEPVP-ELKEQIQAWMREKQ 81 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCGGGCEECH-HHHHHHHHHHHHHH
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhcC--CCCCCCcCCCChHhcchHH-HHHHHHHHHHHHhh
Confidence 468999999999 77777788999 99999999864 5799999998777776665 4555 888876543
No 165
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.50 E-value=0.33 Score=60.63 Aligned_cols=210 Identities=8% Similarity=0.062 Sum_probs=122.7
Q ss_pred ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCC---CHHHHHHHHHHHHhccC--Cch----hHHHHHhCC
Q 002091 392 RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSD---DNQASRDAQELLENLSF--SDD----NVVQMAKAN 462 (968)
Q Consensus 392 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~---~~~~~~~a~~~L~~Ls~--~~~----n~~~i~~~g 462 (968)
+++.+.+|-..|..+-++ ++++.....+|... +..++..|+.+|.+.-. .++ .+..+ +
T Consensus 21 d~~~r~~A~~~L~~~q~s----------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r-- 87 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS----------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-R-- 87 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-H--
T ss_pred CHHHHHHHHHHHHHHHcC----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-H--
Confidence 456777777777666443 45566666677543 78999999988887642 223 33332 2
Q ss_pred chHHHHHHHhc-----CCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCH-HHHHHHHHHHHHhcC---C
Q 002091 463 YFKHLLQRLSA-----GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDI-QMKKVAVKALRNLSS---V 533 (968)
Q Consensus 463 ~v~~Lv~~L~~-----~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~---~ 533 (968)
..++.++.. ++..++...+.+|..+...+-. -.-.+.++.|+.+++++++ ......+++|..|+. +
T Consensus 88 --~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 88 --DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp --HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHh
Confidence 224444432 3466777788888777432100 0126788999999877554 455666677775542 1
Q ss_pred -C--c-----c-----HHHHHHcC---ChHHHHHHhcccC-CCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhH
Q 002091 534 -P--Q-----N-----GLQMIKEG---AVGPLVDLLLHHS-SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKE 596 (968)
Q Consensus 534 -~--~-----~-----~~~i~~~g---~v~~Lv~lL~~~~-~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~ 596 (968)
. . . ++.+.+.. +++....+|.... ...+.+...++.+|..-..-- ....+.+...
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi--------~~~~i~~~~l 234 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI--------NINLIVNEPC 234 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--------CHHHHHCHHH
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc--------CHHhhhcchH
Confidence 1 0 1 12222211 1344444554310 012667788888887766521 1123445677
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhccCCChh
Q 002091 597 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAG 629 (968)
Q Consensus 597 i~~l~~ll~~~~~~~~~~al~~L~~L~~~~~~~ 629 (968)
++.+..++. ++.++..++.+|..+...+...
T Consensus 235 l~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~ 265 (980)
T 3ibv_A 235 MNLLYSFLQ--IEELRCAACETMTEIVNKKMKP 265 (980)
T ss_dssp HHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHcC--ChHHHHHHHHHHHHHHHcCCCh
Confidence 888887775 4899999999999998654443
No 166
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.26 E-value=0.0011 Score=57.88 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHHhhhcc
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDLCQQRD 367 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~~~~~~ 367 (968)
..++||+|+..| +|+.+..++++ |..|++|...+ .+||.++.++...+..++. .|+. |+.|+..+.
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~~~~L~pn~-~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS--PTDPFNRQTLTESMLEPVP-ELKEQIQAWMREKQ 96 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSC--SBCSSSCCBCCTTSSEECH-HHHHHHHHHHHTTT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcC--CCCCCCCCCCChhhceECH-HHHHHHHHHHHHhh
Confidence 468999999999 67777788999 99999999754 5799999999877777776 5555 888886554
No 167
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.20 E-value=0.00071 Score=53.00 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=39.6
Q ss_pred CCCCCCCCCcC-CCCCC-ccCHhH-HHHHHHHHhhcccccccccCcccCCCchHH
Q 002091 300 NNLCPLTMTVL-DTSIL-RPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEE 351 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l-~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~ 351 (968)
++.||+|++.| +++.. ..++++ |+.|++|...++ +||.++.+|...+..+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCCChhhcEE
Confidence 57899999999 45555 568888 999999998875 5999999987665544
No 168
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.12 E-value=0.69 Score=58.63 Aligned_cols=214 Identities=12% Similarity=0.126 Sum_probs=119.1
Q ss_pred CCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhc-CCHHHHHHHHHHHHHhcc------CchhhHHHhhcCc
Q 002091 432 SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMEL------TDHHKASLLEGNV 504 (968)
Q Consensus 432 s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~------~~~~~~~i~~~g~ 504 (968)
+++...+..|-..|..+..+ .++...+..+|.. .+..+|..|+.+|.+... .++.|..|. ...
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~---------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir-~~l 96 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIR-NFV 96 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHS---------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH-HHH
T ss_pred CCChHHHHHHHHHHHHHHhC---------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH-HHH
Confidence 44566777777777765322 3555666677654 478899999999988632 233443332 222
Q ss_pred hHHHHHhhhcC-----CHHHHHHHHHHHHHhcC--CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcC
Q 002091 505 LGPLLHLVSRG-----DIQMKKVAVKALRNLSS--VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 577 (968)
Q Consensus 505 i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~--~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 577 (968)
+..+...-.++ ++.++...+.++..++. .++.. .+.++.|+..+. .+ +...+.++.+|..|+..
T Consensus 97 l~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~~---~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 97 VGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-SS---VNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-TC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-cC---hHHHHHHHHHHHHHHHH
Confidence 23332221111 35678888888888873 34332 245777888775 22 45577788888888752
Q ss_pred cccccCCCCcc-------ccccc--hhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHh
Q 002091 578 TMYQESSQTPV-------TLLES--DKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQL 647 (968)
Q Consensus 578 ~~~~~~~~~~~-------~il~~--~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~l 647 (968)
-.......... ..+.. ......+..++. ..++.++..++.++.+......... +.+...++.+.+.
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~----~~~~~ll~~l~~~ 243 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY----IYETNILELLSTK 243 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH----HHSSSHHHHHHTH
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH----HhhhhHHHHHHHH
Confidence 11100000000 01111 112222333333 3467788889999988765422211 2334556666632
Q ss_pred hccCChhHHHHHHHHHHHhccC
Q 002091 648 CEHDNENVRANAVKLFCCLVDD 669 (968)
Q Consensus 648 l~~~~~~v~~~a~~~L~~Ls~~ 669 (968)
+. .++.++..|+.+|..+...
T Consensus 244 ~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 244 FM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HH-HSHHHHHHHHHHHHHHHHC
T ss_pred hC-CCHhHHHHHHHHHHHHHhC
Confidence 22 3788999999999998744
No 169
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.09 E-value=0.0017 Score=62.71 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHHhhhc
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDLCQQR 366 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~~~~~ 366 (968)
..++||+|+..| +|+.+..++++ |..|+.|...++. +||.++.++...+..|+. +|+. |..|+..+
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~-~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNL-AMKEVIDAFIQEN 173 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECH-HHHHHHHHHHHHC
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchH-HHHHHHHHHHHHC
Confidence 357899999999 77788888999 9999999988764 799999999877777776 4666 88887654
No 170
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.0067 Score=49.22 Aligned_cols=46 Identities=15% Similarity=0.377 Sum_probs=36.9
Q ss_pred ccccccccCCCCcee-cCCchhhhHHHHHHHHhcC-CCCCCCCCCcCC
Q 002091 266 FYCPITRDVMVDPVE-TSSGQTFERSAIEKWFSDG-NNLCPLTMTVLD 311 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~-~~~CP~t~~~l~ 311 (968)
-.|+||++++..=.. ..|||.|=..||.+||+.. ..+||.|+....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 469999999874333 2689999999999999743 479999998764
No 171
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.97 E-value=0.0024 Score=55.48 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=53.0
Q ss_pred CCCCCCCCCCcC-CCCCCccC-HhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHHhhhcc
Q 002091 299 GNNLCPLTMTVL-DTSILRPN-KTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDLCQQRD 367 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn-~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~~~~~~ 367 (968)
..++||+|+..| +|+.+..+ +++ |..|++|...+ .+||.++.++...+..++. .|+. |+.|+..+.
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~--~~cP~~~~~l~~~~L~pn~-~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD--QTDPFNRSPLTMDQIRPNT-ELKEKIQRWLAERK 90 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS--CBCTTTCSBCCTTTSEECH-HHHHHHHHHHHHST
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC--CCCCCCCCCCChhhceEcH-HHHHHHHHHHHHcc
Confidence 468999999999 67777777 898 99999999864 4799999998877777766 4555 888886543
No 172
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.95 E-value=0.26 Score=49.67 Aligned_cols=226 Identities=16% Similarity=0.166 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHh-------hcCC-----CHHHHHHHHHHHHhccCCchhHHHHH
Q 002091 393 IEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTM-------ASSD-----DNQASRDAQELLENLSFSDDNVVQMA 459 (968)
Q Consensus 393 ~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~l-------L~s~-----~~~~~~~a~~~L~~Ls~~~~n~~~i~ 459 (968)
++.++.|+.+|..--. .++.-..+=...|.+..|+.= ++.+ ...-..+|...|.-++.|++.|..+.
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl 94 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFL 94 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHH
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHH
Confidence 3456666444433211 233333343445777666442 2221 12334678888888899999999999
Q ss_pred hCCchHHHHHHHhcCC-----HHHHHHHHHHHHHhccCc--hhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC
Q 002091 460 KANYFKHLLQRLSAGP-----ESVKMRMATTLAEMELTD--HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 460 ~~g~v~~Lv~~L~~~~-----~~~~~~aa~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
++...-.|-..|+..+ +..|-.+.++++.|...+ +.-.-+.+.+.||..++.+..|+.-.|..|.-++.++-.
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9998777888887664 568889999999996544 333345578899999999999999999999999988853
Q ss_pred CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHH
Q 002091 533 VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQ 612 (968)
Q Consensus 533 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~ 612 (968)
++. |+..+. . + .+--.....+|.++.. .+....++.+.
T Consensus 175 dd~---------GL~YiC---~--t---~eRF~av~~vL~~mV~-------------------------~l~~~ps~RLL 212 (268)
T 2fv2_A 175 DDT---------GLAYIC---Q--T---YERFSHVAMILGKMVL-------------------------QLSKEPSARLL 212 (268)
T ss_dssp SHH---------HHHHHT---S--S---HHHHHHHHHHHHHHHH-------------------------HTTTSCCHHHH
T ss_pred cch---------hHHHHH---c--c---HHHHHHHHHHHHHHHH-------------------------HHhcCCChHHH
Confidence 322 222221 1 1 2223333445555543 22344578888
Q ss_pred HHHHHHHHHhccCCChhhHHHHHhhcCchHH------HHHhhccCChhHHHHHHHHHHHh
Q 002091 613 QRILQTFNALCRSPSAGNIKTTLTQCSAIPV------LVQLCEHDNENVRANAVKLFCCL 666 (968)
Q Consensus 613 ~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~------Lv~ll~~~~~~v~~~a~~~L~~L 666 (968)
++++++-..|+. +...+..++.. +|. +..++ .+|+.++.+-...+.|+
T Consensus 213 KhiircYlRLsd---n~rar~aL~~~--LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 213 KHVVRCYLRLSD---NPRAREALRQC--LPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHHHHHTT---SHHHHHHHHHH--SCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHh--CcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 889999888875 44555555542 221 11222 35677777777777776
No 173
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.52 E-value=3.7 Score=51.15 Aligned_cols=434 Identities=13% Similarity=0.117 Sum_probs=212.1
Q ss_pred hhHHHHHHhhcc----ChHHHHHHHHHHHHhcc--Chh----HHHHhhhccChHHHHHHhhc-CCCHHHHHHHHHHHHhc
Q 002091 380 DAVESIVRSLGR----RIEERKLAVALLLELST--CNT----LRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENL 448 (968)
Q Consensus 380 ~~v~~lv~~L~~----~~~~~~~A~~~L~~Ls~--~~~----~~~~i~~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~~L 448 (968)
++.......|.. +...+--|+..|.+.-+ .++ .+..+.+ ..+..+...-. .+...++.+.+.+|..+
T Consensus 40 ~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~--~ll~~l~~~~~~~~~~~IrnKL~~~la~l 117 (980)
T 3ibv_A 40 TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD--SVWSYIKELSFLDEPAYISNAVQHLLTLL 117 (980)
T ss_dssp THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH--HHHHHHHHCCSTTSCTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH--HHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 344455555533 24556666666665433 333 4444443 23333333110 23566777777777776
Q ss_pred cCC--chhHHHHHhCCchHHHHHHHhcCCH-HHHHHHHHHHHHhcc----C-----ch--h-----hHHHhhc---CchH
Q 002091 449 SFS--DDNVVQMAKANYFKHLLQRLSAGPE-SVKMRMATTLAEMEL----T-----DH--H-----KASLLEG---NVLG 506 (968)
Q Consensus 449 s~~--~~n~~~i~~~g~v~~Lv~~L~~~~~-~~~~~aa~~L~~L~~----~-----~~--~-----~~~i~~~---g~i~ 506 (968)
... +.+ -.+.++.++..++.++. ........+|..+.. . ++ . |..+.+. .+++
T Consensus 118 ~~~~~p~~-----Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~ 192 (980)
T 3ibv_A 118 FLQLYPSN-----WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVS 192 (980)
T ss_dssp HHHHTTTT-----CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHhCccc-----CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHH
Confidence 532 121 13456677777765433 333444445543311 0 00 1 1222211 1133
Q ss_pred HHHHhhh----cCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCccccc
Q 002091 507 PLLHLVS----RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 582 (968)
Q Consensus 507 ~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 582 (968)
....+|. +.++.++..++.+|......-+ -..++..+.++.+..+|.+ ++++..|+.+|..+........
T Consensus 193 ~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~-----~~~r~~A~ecL~ei~~k~~~~~ 266 (980)
T 3ibv_A 193 FVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI-----EELRCAACETMTEIVNKKMKPL 266 (980)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC-----hHHHHHHHHHHHHHHHcCCChh
Confidence 3334443 3678888999999988876322 2445556778888888864 6789999999999987543211
Q ss_pred CCCCccccccchhHHHHHHHhhc--cCCHHHHHHHHHHHHHhcc-------CCC--hhh----HHHHHhhcCchHHHHHh
Q 002091 583 SSQTPVTLLESDKEIFMLFSLIN--LTGPNVQQRILQTFNALCR-------SPS--AGN----IKTTLTQCSAIPVLVQL 647 (968)
Q Consensus 583 ~~~~~~~il~~~~~i~~l~~ll~--~~~~~~~~~al~~L~~L~~-------~~~--~~~----~~~~i~~~g~i~~Lv~l 647 (968)
. ...++..-+ +...+..+. ..+.+..+..++.+..++. .+. ..+ ....+ .+.++.++..
T Consensus 267 ~---k~~li~~l~-L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL~~ 340 (980)
T 3ibv_A 267 E---KLNLLNILN-LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLIRY 340 (980)
T ss_dssp H---HHHHHHHHH-HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHHHH
T ss_pred h---HHHHHHHHh-HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHHHH
Confidence 1 001111100 011111111 4677776665555544421 110 011 11112 2468888888
Q ss_pred hccCChhHHHHHHHHHHHhccC----CC----hhHHHHhhccccHHHHHHH----hccCCC-----------H----HHH
Q 002091 648 CEHDNENVRANAVKLFCCLVDD----GD----EAIIREHVGQKCLETLVTI----IQSSHN-----------E----EEI 700 (968)
Q Consensus 648 l~~~~~~v~~~a~~~L~~Ls~~----~~----~~~~~~~~~~~~i~~Lv~l----L~~~~~-----------~----~~~ 700 (968)
+.++++++...++..+..+... .. .... ...++.|+.. ++.+.+ . +.+
T Consensus 341 ~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~-----~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~R 415 (980)
T 3ibv_A 341 LSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASL-----KEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMR 415 (980)
T ss_dssp HTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHH-----HHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHH
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHhccccccccHHH-----HHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHH
Confidence 8888888877777665554411 00 0111 1223334433 322211 0 111
Q ss_pred HHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCC-CCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHc----CC
Q 002091 701 ASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGR-QNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA----GV 774 (968)
Q Consensus 701 ~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~-~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~----g~ 774 (968)
.....++..++. .++..-... ...+...+...- .+...+....|.++.+|+.++.+-........-.. .+
T Consensus 416 k~l~~l~d~~~~l~~~~~l~~~----~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l 491 (980)
T 3ibv_A 416 KKLKIFQDTINSIDSSLFSSYM----YSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVL 491 (980)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHH
T ss_pred HHHHHHHHHHHhcChHHHHHHH----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHH
Confidence 111111111111 222111100 002333332210 01114678899999999999876211000000001 13
Q ss_pred hHHHHHHhh-----cCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCCh
Q 002091 775 IPKLVQLLE-----YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAV 849 (968)
Q Consensus 775 i~~Lv~lL~-----~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i 849 (968)
++.+..++. ...+.++..++++++..+..-.. | + ..+ ..++
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------------------------~-----~---~~l--~~~L 537 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------------------------E-----S---AAI--PALI 537 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------------------------C-----C---TTH--HHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------------------------C-----c---hhH--HHHH
Confidence 455666655 56789999999999998842110 0 0 000 1234
Q ss_pred HHHHh--hccCCChhhhHHHHHHHHhhh
Q 002091 850 RPLVR--VLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 850 ~~Lv~--lL~~~~~~v~~~al~aL~~L~ 875 (968)
+.+++ -+.++++.|+.+|+.++.++.
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~ 565 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFV 565 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHH
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHH
Confidence 44444 445677889999999999999
No 174
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.36 E-value=5.4 Score=49.84 Aligned_cols=219 Identities=13% Similarity=0.142 Sum_probs=121.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHHhCCchHHHHHHHhc-CCHHHHHHHHHHHHHhcc------CchhhH
Q 002091 425 LLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMEL------TDHHKA 497 (968)
Q Consensus 425 ~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~------~~~~~~ 497 (968)
.++..+.+++...+..|-..|..+-. ..++...+..+|.. .++.+|..|+.+|.+... .++.+.
T Consensus 20 ~av~~ly~p~~~~r~~A~~~L~~~q~---------sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~ 90 (1023)
T 4hat_C 20 QVVSTFYQGSGVQQKQAQEILTKFQD---------NPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRI 90 (1023)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHH---------CTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHc---------CccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 34444434444567777777765432 23455555666654 478999999999887632 233333
Q ss_pred HHhhcCchHHHHHhhhcC-----CHHHHHHHHHHHHHhcC--CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHH
Q 002091 498 SLLEGNVLGPLLHLVSRG-----DIQMKKVAVKALRNLSS--VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATA 570 (968)
Q Consensus 498 ~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~--~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~ 570 (968)
.+ ....+..+.....++ .+.++...+.+|..++. .++.. .+.++.++.++..+ +...+..+.+
T Consensus 91 ~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W-----p~~l~dL~~~l~~~----~~~~~~~L~i 160 (1023)
T 4hat_C 91 GI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSSSS----VNVCENNMIV 160 (1023)
T ss_dssp HH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHTTTC----HHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc-----hHHHHHHHHHhcCC----HHHHHHHHHH
Confidence 22 233444444432221 24555667777777763 33332 24566677777532 3456677777
Q ss_pred HHHhhcCccc--ccCC-CCccccc----c--chhHHHHHHHhhc-cCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCc
Q 002091 571 IMHLAVSTMY--QESS-QTPVTLL----E--SDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSA 640 (968)
Q Consensus 571 L~~La~~~~~--~~~~-~~~~~il----~--~~~~i~~l~~ll~-~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~ 640 (968)
|..|...-.. +... ......+ . ....+..+..++. ..++.+...++.++....+.-... .+.....
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~----~i~~~~l 236 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYR----YIYETNI 236 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTH----HHHSSSH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHH----HhcchhH
Confidence 7777653110 0000 0000000 0 1122333334443 457778888899888877542221 2344567
Q ss_pred hHHHH-HhhccCChhHHHHHHHHHHHhcc
Q 002091 641 IPVLV-QLCEHDNENVRANAVKLFCCLVD 668 (968)
Q Consensus 641 i~~Lv-~ll~~~~~~v~~~a~~~L~~Ls~ 668 (968)
++.+. .++. ++.++..|+.+|..+..
T Consensus 237 l~~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 237 LELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 88888 7774 57899999999999874
No 175
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.29 Score=51.39 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=119.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCc---hhhHHHh-h-cCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCC----ccH
Q 002091 467 LLQRLSAGPESVKMRMATTLAEMELTD---HHKASLL-E-GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP----QNG 537 (968)
Q Consensus 467 Lv~~L~~~~~~~~~~aa~~L~~L~~~~---~~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~----~~~ 537 (968)
|-..|.+.+...|..|...|..+.... ....... . ...++.+-..+.+.+..++..++.+|..++..- ..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567788889999999998887763221 1111111 1 234556667788889999999999999887421 112
Q ss_pred HH--HHHcCChHHHHHH-hcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHH
Q 002091 538 LQ--MIKEGAVGPLVDL-LLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQR 614 (968)
Q Consensus 538 ~~--i~~~g~v~~Lv~l-L~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~ 614 (968)
.. ..-...++.|++- |.+.. ..++..+..++..++..... ....+..+...+++.+|.++..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k---~~~~~~a~~~l~~~~~~~~~------------~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR---ATTKTQSMSCILSLCGLDTS------------ITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHTSSS------------SHHHHHHHGGGGGCSCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHhccCHHHHHH
Confidence 11 2223456777754 55443 67888888888877653211 1234566777888999999999
Q ss_pred HHHHHHHhccC--CChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 615 ILQTFNALCRS--PSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 615 al~~L~~L~~~--~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
++..|..+... ......+..+. .+++.+..++.+.++.||..|..++..+-
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888876532 11111122221 24567778889999999999999888775
No 176
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.25 E-value=0.004 Score=74.73 Aligned_cols=66 Identities=23% Similarity=0.211 Sum_probs=55.0
Q ss_pred CCCCCCCCCcC-CCCCCccC-HhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHHhhhcch
Q 002091 300 NNLCPLTMTVL-DTSILRPN-KTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDLCQQRDQ 368 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn-~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~~~~~~~ 368 (968)
.+.||+|.+.| +|+.+..+ +|+ |..|++|...+ .+||.|+++|...+..|+. +|+. |++||.++..
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~--~tdP~Tr~~L~~~~liPN~-~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD--STDPFNRMPLKLEDVTPNE-ELRQKILCFKKQKKE 960 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCCGGGCEECH-HHHHHHHHHHHHHHT
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC--CCCCCCCCCCCcccccccH-HHHHHHHHHHHHHHh
Confidence 57799999999 67777665 799 99999999875 4799999999888888887 6777 9999986543
No 177
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.13 E-value=0.014 Score=45.38 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=38.4
Q ss_pred cccccccccCCCCceecCCch-----hhhHHHHHHHHhc-CCCCCCCCCCcCC
Q 002091 265 SFYCPITRDVMVDPVETSSGQ-----TFERSAIEKWFSD-GNNLCPLTMTVLD 311 (968)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~-----t~~r~~i~~~~~~-~~~~CP~t~~~l~ 311 (968)
+-.|.||++-..+|.+.||.. -|=+.|+.+|+.. ++.+||+|+.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 446999998888899889643 5779999999974 6789999998764
No 178
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.94 E-value=0.0075 Score=51.98 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=48.7
Q ss_pred CCCCCCCCCCcC-CCCCCc-cCHhH-HHHHHHHHhhc----ccccccccCcc---cCCCchHHHHHhHHH-HHHHhhhc
Q 002091 299 GNNLCPLTMTVL-DTSILR-PNKTL-RQSIEEWKDRN----TMITIASMKPK---LVSTEVEEVLHCLEQ-LQDLCQQR 366 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~-pn~~l-~~~I~~w~~~~----~~~~~~~~~~~---l~~~~~~~~~~aL~~-l~~~~~~~ 366 (968)
..++||+|++.| +|+.+. -++++ |..|.+|...+ +..+||.++-+ +...+..++. +|++ |..|....
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~-~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE-ALRRAIENHNKKR 83 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH-HHHHHHHHHHTTC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH-HHHHHHHHHHHHh
Confidence 357899999999 566663 68999 99999999775 24579986554 6666666665 4555 77776543
No 179
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.69 E-value=1 Score=50.52 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=86.6
Q ss_pred HHhhccChHHHHHHHHHHHHhcc-Chh--HHHHhhhccChHHHHHHhhc--------CC--CHHHHHHHHHHHHhccCCc
Q 002091 386 VRSLGRRIEERKLAVALLLELST-CNT--LRDQIGDVQGCILLLVTMAS--------SD--DNQASRDAQELLENLSFSD 452 (968)
Q Consensus 386 v~~L~~~~~~~~~A~~~L~~Ls~-~~~--~~~~i~~~~g~i~~Lv~lL~--------s~--~~~~~~~a~~~L~~Ls~~~ 452 (968)
...++..++.+.-|+-.|+++-+ ... .+..... .++.-.|+.++. ++ -..+|+.|+++|..+ .+-
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N-~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hL 258 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD-SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPL 258 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC-TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTT
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc-HHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhC
Confidence 33446788999999999998866 221 1111111 133333333331 11 247899999999988 543
Q ss_pred hhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh-hcCchHHHHHhhhcCCHHHHHHHHHHHHHhc
Q 002091 453 DNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL-EGNVLGPLLHLVSRGDIQMKKVAVKALRNLS 531 (968)
Q Consensus 453 ~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 531 (968)
+.. ...+..++..+.....++|.-+.-.|..+ +..+. =.++++.++..|++.+.+++..|+.+|.-++
T Consensus 259 p~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 259 IGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp SCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred Chh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 322 23444455555777899999888888888 11111 1567888889999999999999999999887
No 180
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.50 E-value=0.012 Score=49.78 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=40.8
Q ss_pred cccccccCCCC-ceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCCCCcc
Q 002091 267 YCPITRDVMVD-PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (968)
Q Consensus 267 ~cpi~~~~m~d-pv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~p 317 (968)
.||+|.-.... .-++||+|.||-.|+..|..++..+||.|+.++...+..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 47777776653 3468999999999999999888899999999886654444
No 181
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.06 E-value=0.052 Score=55.67 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=26.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccCCchhhhhcccCCchhhHHHHHHH
Q 002091 894 DRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVL 955 (968)
Q Consensus 894 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~aL 955 (968)
+.|..++.+++..|+..+...+. ...|..+ .+.+..+|..|...|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 34555666777777776655532 1223344 667777777766543
No 182
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.84 E-value=0.14 Score=52.44 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=20.1
Q ss_pred hhHHHHHhhcCchHHHHHhhccCChhHHHHHHH
Q 002091 629 GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVK 661 (968)
Q Consensus 629 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~ 661 (968)
..+|......-....|..++.++++.|+..++.
T Consensus 64 ~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 64 WERRAIAVRYSPVEALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp HHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHH
Confidence 445555444333455666677777777777775
No 183
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.11 E-value=0.013 Score=61.52 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=37.3
Q ss_pred cccccccccCCCC----cee----cCCchhhhHHHHHHHHhcC----------CCCCCCCCCcCC
Q 002091 265 SFYCPITRDVMVD----PVE----TSSGQTFERSAIEKWFSDG----------NNLCPLTMTVLD 311 (968)
Q Consensus 265 ~~~cpi~~~~m~d----pv~----~~~g~t~~r~~i~~~~~~~----------~~~CP~t~~~l~ 311 (968)
.--|+||...+.+ |-. ..|||.|-..|+.+||+.. ..+||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3459999999987 533 4699999999999999641 146999999873
No 184
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.75 E-value=3.3 Score=43.65 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=142.3
Q ss_pred chhHHHHHHhhcc-ChHHHHHHHHHHHHhcc-Chh----HHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCc
Q 002091 379 DDAVESIVRSLGR-RIEERKLAVALLLELST-CNT----LRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSD 452 (968)
Q Consensus 379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~----~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~ 452 (968)
.+.+..++..|.. +.+.++.++.....+-+ ... ....+......+..|+.-- +++++...+...|.....++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhH
Confidence 5667777777755 56778888877777655 221 2233443344455555443 45566677888888888888
Q ss_pred hhHHHHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhhHHHhh---cCchHHHHHhhhcCCHHHHHHHHHHHH
Q 002091 453 DNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKASLLE---GNVLGPLLHLVSRGDIQMKKVAVKALR 528 (968)
Q Consensus 453 ~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~-~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 528 (968)
.--..+...+.+..+.+....++-++-..|..++..|-. +...-..+.. .......-+||.+++.-.+..+++.|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 888888888889999999999999999999999988833 3333223332 235677778999999999999999999
Q ss_pred HhcCCCccHHHHHHc----CChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCc
Q 002091 529 NLSSVPQNGLQMIKE----GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST 578 (968)
Q Consensus 529 ~Ls~~~~~~~~i~~~----g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 578 (968)
.|-.+..|...|... .-+..++.+|++.+ ..++.+|..+.--...++
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s---k~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS---RNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHCS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch---hchhhhhhhheeeeeeCC
Confidence 999988888777653 35778889998876 788999988887766544
No 185
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=92.69 E-value=0.033 Score=58.90 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=53.2
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHHhhhc
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDLCQQR 366 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~~~~~ 366 (968)
..++||+|...| +|+.+..++++ |..|+.|...++ .+||.++.++...+..|+. .|+. |..|+..+
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~-~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNL-AMKEVIDAFISEN 275 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECH-HHHHHHHHHHTTC
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccH-HHHHHHHHHHHHC
Confidence 467899999999 77778888998 999999998875 3599999998776766665 5555 88888654
No 186
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.46 E-value=4.7 Score=42.57 Aligned_cols=215 Identities=9% Similarity=0.092 Sum_probs=150.9
Q ss_pred cCchHHHHHhhccCChhHHHHHHHHHHHhccCCCh---hHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCH
Q 002091 638 CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDE---AIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVP 714 (968)
Q Consensus 638 ~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~---~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~ 714 (968)
.+.+..|+..+..=+-+.+..+..+..++.....+ .....+.. -...|.-++....+.++...+-.+|.-+...+
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHHhH
Confidence 46788888888888889999999998888733221 12222222 23333444444444556666677788877889
Q ss_pred HhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcC---ChHHHHHHhhcCChHHHH
Q 002091 715 QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG---VIPKLVQLLEYGTTLTKE 791 (968)
Q Consensus 715 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g---~i~~Lv~lL~~~~~~v~~ 791 (968)
...+.++..+.+..+.+.+.. +.-++...|..++..+-.. .......+...+ ++...-.+|.+++.-+|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~------~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEM------STFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTC------SSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcC------CCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 999999999988888888887 5677777888777777665 455555555443 566778899999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHH
Q 002091 792 HAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDAL 871 (968)
Q Consensus 792 ~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL 871 (968)
.+...|+.+..+..+ ..--...+-+..-+..++.+|+++...++..|-..+
T Consensus 228 QSlKLLgelLldr~N-----------------------------~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVF 278 (341)
T 1upk_A 228 QSLKLLGELLLDRHN-----------------------------FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVF 278 (341)
T ss_dssp HHHHHHHHHHHSGGG-----------------------------HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchH-----------------------------HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhe
Confidence 999999999853321 000112223445688899999999999999999998
Q ss_pred Hhhh-cccccchhhHHHHhc
Q 002091 872 VTLI-EGERLQNGSKVLEDA 890 (968)
Q Consensus 872 ~~L~-~~~~~~~~~~~i~~~ 890 (968)
.-+. ++.+..+....+...
T Consensus 279 KvFVANP~K~~~I~~IL~~N 298 (341)
T 1upk_A 279 KVFVANPNKTQPILDILLKN 298 (341)
T ss_dssp HHHHHCSSCCHHHHHHHHHT
T ss_pred eeeeeCCCCChHHHHHHHHH
Confidence 8888 777666655555543
No 187
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.42 E-value=1.1 Score=46.80 Aligned_cols=150 Identities=12% Similarity=0.174 Sum_probs=98.2
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHH----HHHHHHHcCChHHHHHH-hhcCChHHHHHHHHHHhhh
Q 002091 726 LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE----WQKRAAEAGVIPKLVQL-LEYGTTLTKEHAATSLARF 800 (968)
Q Consensus 726 l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~----~~~~~~~~g~i~~Lv~l-L~~~~~~v~~~Aa~aL~nl 800 (968)
.+.+-..+.+ .+..++..++.++..++...... ......-..++|.|+.- +.++.+.++..|..++..+
T Consensus 57 ~~~lkk~l~D------sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~ 130 (278)
T 4ffb_C 57 PTLFAQYITD------SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSL 130 (278)
T ss_dssp THHHHHHTTC------SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc------chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 3455566666 56788889988888877542211 11111223457777754 6777888998888888777
Q ss_pred cccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhhccCCChhhhHHHHHHHHhhh-c-cc
Q 002091 801 SKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-E-GE 878 (968)
Q Consensus 801 ~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~-~~ 878 (968)
...... ...+++.++..+.+.++.++..++..|..+. . +.
T Consensus 131 ~~~~~~--------------------------------------~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 131 CGLDTS--------------------------------------ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHTSSS--------------------------------------SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCc--------------------------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 632210 0114677788889999999999999999988 2 21
Q ss_pred ccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Q 002091 879 RLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL 921 (968)
Q Consensus 879 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 921 (968)
...+....+ ...++.+..++.+.|+.||..|..++..+++.
T Consensus 173 ~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 173 TNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 111111111 12345677888999999999999999888754
No 188
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.26 E-value=0.052 Score=47.33 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=28.7
Q ss_pred Cccccccccc-CCCCcee--cCCchhhhHHHHHHH
Q 002091 264 QSFYCPITRD-VMVDPVE--TSSGQTFERSAIEKW 295 (968)
Q Consensus 264 ~~~~cpi~~~-~m~dpv~--~~~g~t~~r~~i~~~ 295 (968)
+++.|+||.+ ...+||. +.||++||+.|++.|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 5688999996 4889999 999999999999984
No 189
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.83 E-value=1.9 Score=44.47 Aligned_cols=173 Identities=10% Similarity=0.063 Sum_probs=108.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcc-CchhhHHHhhcCchHHHHHhh----hcCCHHHHHHHHHHHHHhcC---CCccH
Q 002091 466 HLLQRLSAGPESVKMRMATTLAEMEL-TDHHKASLLEGNVLGPLLHLV----SRGDIQMKKVAVKALRNLSS---VPQNG 537 (968)
Q Consensus 466 ~Lv~~L~~~~~~~~~~aa~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~aL~~Ls~---~~~~~ 537 (968)
.+...|-+.+..-+..++..|..... +++ ..+. .+..+++++ .+.++.+...++.+|..+.. ..+.+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444555555555566666555421 111 1111 122233333 36688888888888777642 11111
Q ss_pred HHHHHc-CChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHH
Q 002091 538 LQMIKE-GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRIL 616 (968)
Q Consensus 538 ~~i~~~-g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al 616 (968)
-.-.++ -.+|.|++-+.+.. +.+++.+-.+|..+.. +.......+.++.-+.+.+...+..++
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k---~~vR~~~r~il~~l~~-------------v~~~~~v~~~l~~g~ksKN~R~R~e~l 188 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAK---DNMRTSVRDIVNVLSD-------------VVGPLKMTPMLLDALKSKNARQRSECL 188 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHH-------------HHCHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHH-------------HCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 111121 25788998887665 6788888888877764 222234567777888899999999999
Q ss_pred HHHHHhccC-CChhhHHHHHhhcCch---HHHHHhhccCChhHHHHHHHHHHHhc
Q 002091 617 QTFNALCRS-PSAGNIKTTLTQCSAI---PVLVQLCEHDNENVRANAVKLFCCLV 667 (968)
Q Consensus 617 ~~L~~L~~~-~~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~v~~~a~~~L~~Ls 667 (968)
..+..+-.. +.. . ..++ +.+..++.+.|..||..|..++..+-
T Consensus 189 ~~l~~li~~~G~~-~-------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 189 LVIEYYITNAGIS-P-------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHHHHCSG-G-------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-c-------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888887532 211 1 2468 99999999999999999999887664
No 190
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.60 E-value=18 Score=40.01 Aligned_cols=130 Identities=19% Similarity=0.242 Sum_probs=88.9
Q ss_pred hHHHHHHhhccChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCchhHHHHH
Q 002091 381 AVESIVRSLGRRIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMA 459 (968)
Q Consensus 381 ~v~~lv~~L~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~n~~~i~ 459 (968)
....++..-.++..+++-|+..|...-+ -|+..+. +|..++.+...+|..+|..|++.|-.+|.+ ++...+
T Consensus 30 ~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~------Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki- 101 (507)
T 3u0r_A 30 AYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADS------AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV- 101 (507)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH------HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-
Confidence 3444555555567788888888888766 5665543 466788899999999999999999999988 665555
Q ss_pred hCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHH
Q 002091 460 KANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRN 529 (968)
Q Consensus 460 ~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 529 (968)
.+.|+++|...++......-..|..|-..+. .+.+..|..-+..++..+|+.++..|..
T Consensus 102 ----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 102 ----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp ----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 4578899998876555444455544422111 2344555555555677888888777754
No 191
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.93 E-value=40 Score=42.13 Aligned_cols=172 Identities=9% Similarity=0.103 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHHhcc------ChhHHHHhhhccChHHHHHHhhcC-----CCHHHHHHHHHHHHhccCC--chhHHHH
Q 002091 392 RIEERKLAVALLLELST------CNTLRDQIGDVQGCILLLVTMASS-----DDNQASRDAQELLENLSFS--DDNVVQM 458 (968)
Q Consensus 392 ~~~~~~~A~~~L~~Ls~------~~~~~~~i~~~~g~i~~Lv~lL~s-----~~~~~~~~a~~~L~~Ls~~--~~n~~~i 458 (968)
++..+--|+..|.+.-+ .++-+..+.+ ..+..+...... .++.++...+.++..+... +++
T Consensus 74 ~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~--~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~---- 147 (1073)
T 3gjx_A 74 NMNTKYYGLQILENVIKTRWKILPRNQCEGIKK--YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH---- 147 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH--HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----
T ss_pred CHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHH--HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----
Confidence 44566667777765433 2334444443 334444443222 2455666666666666422 121
Q ss_pred HhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC--c-------hh-----hHHHhh--cCchHHHHHhhh-cCCHHHHH
Q 002091 459 AKANYFKHLLQRLSAGPESVKMRMATTLAEMELT--D-------HH-----KASLLE--GNVLGPLLHLVS-RGDIQMKK 521 (968)
Q Consensus 459 ~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~--~-------~~-----~~~i~~--~g~i~~Lv~lL~-~~~~~~~~ 521 (968)
-.+.++.++..++. ++........+|..|... + .. +..+.+ ..+++.+..+|. ..++.+..
T Consensus 148 -Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~ 225 (1073)
T 3gjx_A 148 -WPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVH 225 (1073)
T ss_dssp -CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHH
T ss_pred -ccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 13456777777754 345556666777666321 1 01 112222 122333334443 35788888
Q ss_pred HHHHHHHHhcCCCccHHHHHHcCChHHH-HHHhcccCCCCcchHHHHHHHHHHhhcC
Q 002091 522 VAVKALRNLSSVPQNGLQMIKEGAVGPL-VDLLLHHSSSSSSLREETATAIMHLAVS 577 (968)
Q Consensus 522 ~a~~aL~~Ls~~~~~~~~i~~~g~v~~L-v~lL~~~~~~~~~~~~~a~~~L~~La~~ 577 (968)
.++.+|....+.-+ -..+++.+.++.| ..+|.. +.++..|+.+|..+.+.
T Consensus 226 ~~L~~L~~~~sWI~-i~~i~~~~ll~~L~~~~L~~-----~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 226 ATLETLLRFLNWIP-LGYIFETKLISTLIYKFLNV-----PMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHHHTTTSC-THHHHSSSHHHHHHHHTSSS-----HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHhccchHHHHHHHHhcCC-----hHHHHHHHHHHHHHHhc
Confidence 99999999987543 2456677888877 466642 67899999999999875
No 192
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=90.22 E-value=0.15 Score=54.48 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=52.0
Q ss_pred CcccccccccCCCCcee-cCCchh--hhHHHHHHHHh-cCCCCCCCCCCcCCCCCCccCHhHHHHHHH
Q 002091 264 QSFYCPITRDVMVDPVE-TSSGQT--FERSAIEKWFS-DGNNLCPLTMTVLDTSILRPNKTLRQSIEE 327 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~-~~~g~t--~~r~~i~~~~~-~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~ 327 (968)
-.+.|||++..|..||- ..|.|. ||...+-.... .+.-.||+|++.+....|..+.-+.+.+..
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 46899999999999998 468887 99887776543 456789999999999999888777666654
No 193
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.77 E-value=2.9 Score=43.01 Aligned_cols=175 Identities=6% Similarity=0.075 Sum_probs=109.8
Q ss_pred HHHhhccChHHHHHHHHHHHHhcc-ChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccC---CchhHHHHHh
Q 002091 385 IVRSLGRRIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSF---SDDNVVQMAK 460 (968)
Q Consensus 385 lv~~L~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~---~~~n~~~i~~ 460 (968)
...+++.+...+.+|+..|..... +++ ..+......+.++.--+.+.+..+...++..|..+.. ....+-.-.+
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 444556677777777777776533 332 2222211223333333346688888888887777631 1111000001
Q ss_pred -CCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhh-cCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHH
Q 002091 461 -ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE-GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGL 538 (968)
Q Consensus 461 -~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~ 538 (968)
.-.+|.|+.-+......+|..+-.++..+.. +.. ....+.+++-+++.+.+.+..++..+..+-...+..
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 2357888888888888888888777766632 112 335677888889999999999999999886322211
Q ss_pred HHHHcCCh---HHHHHHhcccCCCCcchHHHHHHHHHHhh
Q 002091 539 QMIKEGAV---GPLVDLLLHHSSSSSSLREETATAIMHLA 575 (968)
Q Consensus 539 ~i~~~g~v---~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 575 (968)
...++ +.+..++.+.+ ..++..|+.++..+-
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d---~~VR~aAl~~lve~y 235 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKD---VNVRNAAINVLVACF 235 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSS---HHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 23468 88999998766 789999988887654
No 194
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=89.66 E-value=0.11 Score=42.66 Aligned_cols=65 Identities=22% Similarity=0.447 Sum_probs=47.4
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCCchHHHHHhHHH-HHHHhhh
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQ-LQDLCQQ 365 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~aL~~-l~~~~~~ 365 (968)
...+||+|...+ ++..+.-++++ +.-|.+|...+ ..+||..+..+...+..++. .|+. |+.|...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~-~~~CP~C~~~~~~~~l~~n~-~l~~~i~~~~~~ 74 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-HKTCPKSQETLLHAGLTPNY-VLKSLIALWCES 74 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-CCBCTTTCCBCSSCCCEECT-TTHHHHHHHHHH
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC-cCCCCCCcCCCChhhCccCH-HHHHHHHHHHHH
Confidence 457899999999 55666667888 99999999764 36799998887665555544 4555 6666543
No 195
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=88.28 E-value=6 Score=41.67 Aligned_cols=175 Identities=12% Similarity=0.098 Sum_probs=103.2
Q ss_pred hHHHHHHhhccChHHHHHHHHHHHHhccChhHHHHhhhccCh---HHHHHHhhc-CCCHHHHHHHHHHHHhccCCchhHH
Q 002091 381 AVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGC---ILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVV 456 (968)
Q Consensus 381 ~v~~lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~---i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~~~~n~~ 456 (968)
.+..+.+.+.=..+.+-.++..++.+..++.....+....+. +..+...+. ...+..+..+++++.|+-.++..+.
T Consensus 104 ~l~~l~kil~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 104 QLQILWKAINCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHHTSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHHcCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 455566655223345556777777776677666655442222 222333343 2456678889999999998888887
Q ss_pred HHHhC--CchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHh-hcCchHHHHHhhhc-CCHHHHHHHHHHHHHhcC
Q 002091 457 QMAKA--NYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL-EGNVLGPLLHLVSR-GDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 457 ~i~~~--g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~-~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~ 532 (968)
.+... ..++.+...+...+..++..++..++|++..-.....+- ...++..+..++.. .+.+....++.||++|..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 77652 223333334445578899999999999964211000000 01133444455543 588999999999999997
Q ss_pred CCccHHHHHHcCChHHHHHHhcc
Q 002091 533 VPQNGLQMIKEGAVGPLVDLLLH 555 (968)
Q Consensus 533 ~~~~~~~i~~~g~v~~Lv~lL~~ 555 (968)
.+.....+.+.=.+...+.-+.+
T Consensus 264 ~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 264 DDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp TCHHHHHHHHHTTHHHHGGGGGG
T ss_pred CChhHHHHHHHcCHHHHHHHHHh
Confidence 65555555554333434443333
No 196
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.61 E-value=15 Score=40.63 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=84.6
Q ss_pred hcCCHHHHHHHHHHHHHhc-cCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcCCCccHHHHHHcCChHHHH
Q 002091 472 SAGPESVKMRMATTLAEME-LTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLV 550 (968)
Q Consensus 472 ~~~~~~~~~~aa~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~Lv 550 (968)
..|+...+.-|+..|.... ..++.. ..+|..+++|+.+++..+|..|.+.|..+|.+ ++..++ ++.|+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHH
Confidence 3567889999999998873 344443 34789999999999999999999999999977 665554 46789
Q ss_pred HHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002091 551 DLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNA 621 (968)
Q Consensus 551 ~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~al~~L~~ 621 (968)
++|...+ +.-....-.+|..|.. ....+.+..+...+..+++.+++.++..|..
T Consensus 107 QlLqtdd---~~E~~~V~~sL~sllk--------------~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 107 QLLQTDD---SAEFNLVNNALLSIFK--------------MDAKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHTTCCC---HHHHHHHHHHHHHHHH--------------HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhccc---hHHHHHHHHHHHHHHh--------------cChHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 9998543 2222233334444432 2224556666666666788888888887754
No 197
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=87.61 E-value=16 Score=38.37 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHhccCchhhHHHhh--cCchHHHHHhhhcCCHHHHHHHHHHHHHhcC
Q 002091 474 GPESVKMRMATTLAEMELTDHHKASLLE--GNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 474 ~~~~~~~~aa~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
+++..+.-+++++.|+..++..+..+.. ..+++.+...+.+.+..++..++..++|++.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 3566788999999999888877776654 3455566666666788999999999999984
No 198
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.73 E-value=0.43 Score=50.89 Aligned_cols=64 Identities=13% Similarity=0.244 Sum_probs=51.5
Q ss_pred CcccccccccCCCCcee-cCCchh--hhHHHHHHHHh-cCCCCCCCCCCcCCCCCCccCHhHHHHHHH
Q 002091 264 QSFYCPITRDVMVDPVE-TSSGQT--FERSAIEKWFS-DGNNLCPLTMTVLDTSILRPNKTLRQSIEE 327 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~-~~~g~t--~~r~~i~~~~~-~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~ 327 (968)
-.+.|||+...|..|+- ..|.|. ||...+-.... .+.-.||+|++.+....|..+.-+.+.+..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 47899999999999998 568877 99887776554 456689999999998888888776666543
No 199
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=84.93 E-value=2.5 Score=47.47 Aligned_cols=187 Identities=16% Similarity=0.194 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCCh
Q 002091 697 EEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVI 775 (968)
Q Consensus 697 ~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i 775 (968)
..+++.++.+|+.+.. +++ ..++..++..+.. +..+++..+.-.|.-+..-.. . -.+++
T Consensus 242 APVRETaAQtLGaL~hLp~e-------~~IL~qLV~~l~~------~~WEVRHGGLLGLKYL~DLL~-----~--Ld~Vv 301 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGP-------NDIIEQLVGFLDS------GDWQVQFSGLIALGYLKEFVE-----D--KDGLC 301 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCS-------CCHHHHHTTGGGC------SCHHHHHHHHHHHHHTGGGCC-----C--HHHHH
T ss_pred eehHHHHHHHHHHHHhCChh-------HHHHHHHHhhcCC------CCeeehhhhHHHHHHHHHHHH-----H--HHHHH
Confidence 4678888877777722 333 3344455544444 568899999888888722111 1 24568
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHHhh
Q 002091 776 PKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRV 855 (968)
Q Consensus 776 ~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~l 855 (968)
+.++..|.+.+.+|+..||.+|..++. | +... .++..+-++
T Consensus 302 ~aVL~GL~D~DDDVRAVAAetLiPIA~-------p---------------------------~~l~-----~LL~iLWd~ 342 (800)
T 3oc3_A 302 RKLVSLLSSPDEDIKLLSAELLCHFPI-------T---------------------------DSLD-----LVLEKCWKN 342 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHTTSCC-------S---------------------------STHH-----HHHHHHHHH
T ss_pred HHHHhhcCCcccHHHHHHHHHhhhhcc-------h---------------------------hhHH-----HHHHHHHHH
Confidence 888899999999999999999998871 0 0011 134444444
Q ss_pred ccCCCh--hhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhHHHhcccC
Q 002091 856 LEDPDH--GACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSA 932 (968)
Q Consensus 856 L~~~~~--~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 932 (968)
|.+-|+ .-....+..|..|. .+.. .-....-++.|..++.|.-+.||.+++.++.+++ ..+.-
T Consensus 343 L~~LDDLSASTgSVMdLLAkL~s~p~~------a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-~~~~L------- 408 (800)
T 3oc3_A 343 IESEELISVSKTSNLSLLTKIYRENPE------LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-EESID------- 408 (800)
T ss_dssp HHTCCSCCTTHHHHHHHHHHHHHHCTT------CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-CHHHH-------
T ss_pred hhhhcccchhhHHHHHHHHHHHcCCcc------cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-hhhHH-------
Confidence 443221 12233445555555 2211 0112377899999999999999999999998887 22211
Q ss_pred CchhhhhcccCCchhhHHHHHHHH
Q 002091 933 QMPLVDLTQRGNSSMKSLSARVLA 956 (968)
Q Consensus 933 ~~~Lv~ll~~~~~~~~~~A~~aL~ 956 (968)
.....+++-+.++++++.+..+..
T Consensus 409 RLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 409 FLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 122456667788888888777664
No 200
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=84.10 E-value=94 Score=38.75 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=78.9
Q ss_pred hHHHHHHhh-ccChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc-CCCHHHHHHHHHHHHhccCC-----ch
Q 002091 381 AVESIVRSL-GRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENLSFS-----DD 453 (968)
Q Consensus 381 ~v~~lv~~L-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~~-----~~ 453 (968)
.++.++..+ +++++.+.+|-..|..+-++ ++++..+..+|. +.++.++..|+.+|.+.... ++
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 344555554 34456677777777766544 455555555564 56889999999999987421 22
Q ss_pred hHHHHHhCCchHHHHHHHhc-----CCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHH
Q 002091 454 NVVQMAKANYFKHLLQRLSA-----GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALR 528 (968)
Q Consensus 454 n~~~i~~~g~v~~Lv~~L~~-----~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 528 (968)
....-.+...+..+...-.. .++.++...+.++..++..+-.. .-++.++.++.+++. ++......+.+|.
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 22222233334444433222 23555666666776664321000 125678888888764 4566777888888
Q ss_pred HhcC
Q 002091 529 NLSS 532 (968)
Q Consensus 529 ~Ls~ 532 (968)
.|+.
T Consensus 175 ~L~E 178 (1073)
T 3gjx_A 175 LLSE 178 (1073)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 201
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=83.27 E-value=0.26 Score=50.03 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCCCCCCCCCcC-CCCCC-ccCHhH-HHHHHHHHhhcccccccc--cCcccCCCchHHHHHhHHH
Q 002091 299 GNNLCPLTMTVL-DTSIL-RPNKTL-RQSIEEWKDRNTMITIAS--MKPKLVSTEVEEVLHCLEQ 358 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l-~pn~~l-~~~I~~w~~~~~~~~~~~--~~~~l~~~~~~~~~~aL~~ 358 (968)
...+||+|...| +|+.. .-++++ |..|.+|...++...||. .+..+...+..++. .|++
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~-~L~~ 243 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDP-IMEL 243 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECH-HHHH
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCH-HHHH
Confidence 467999999999 66653 668888 999999998776678998 44777665655543 4444
No 202
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=82.23 E-value=15 Score=38.51 Aligned_cols=120 Identities=12% Similarity=0.161 Sum_probs=87.4
Q ss_pred HHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-
Q 002091 634 TLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE- 712 (968)
Q Consensus 634 ~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~- 712 (968)
-+...+++..+...+..++.++.+..++.|...+ +...- ...--...+|.++..+.-..++++.....+.|+|...
T Consensus 279 GFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVS-DaksL--~~t~L~e~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAH 355 (619)
T 3c2g_A 279 GFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVS-DAKAL--AKTPLENILPFLLRLIEIHPDDEVIYSGTGFLSNVVAH 355 (619)
T ss_dssp HHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHT-TCGGG--GTSCCTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHSTT
T ss_pred ceeecccceeEEEEeecCCcHHHHhhhheeeeec-chHHH--hhccccccchHHHHHhccCCCcceEEecchHHHHHHhc
Confidence 3444578999999999999999999999999987 32211 1111235788888888887889999999999999998
Q ss_pred CHHhHHHHHHcCCHHHHHHHhhcCCCC-CCchhHHHHHHHHHHhh
Q 002091 713 VPQFTQWLLDAGALPIVLNFLKNGRQN-DPNRFQVVENAVGALRR 756 (968)
Q Consensus 713 ~~~~~~~l~~~g~l~~Lv~lL~~~~~~-~~~~~~v~e~a~~aL~~ 756 (968)
....++..+..|++..|...+....+- +-.+..-+..+|++++|
T Consensus 356 Kq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 356 KQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred ccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 777888888999999998887652211 11122345566666655
No 203
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.79 E-value=1.1 Score=45.41 Aligned_cols=47 Identities=15% Similarity=0.356 Sum_probs=36.7
Q ss_pred ccccccccCCCCceecC-CchhhhHHHHHHHHhc-CCCCCCCCCCcCCC
Q 002091 266 FYCPITRDVMVDPVETS-SGQTFERSAIEKWFSD-GNNLCPLTMTVLDT 312 (968)
Q Consensus 266 ~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~-~~~~CP~t~~~l~~ 312 (968)
..|.||.++..-=+.-+ ||+.|-+.|+.+|++. +...||.|+.+.+.
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 35999998887444433 8899999999999964 45799999987644
No 204
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=79.53 E-value=31 Score=43.24 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=82.1
Q ss_pred hhHHHHHHHhhcc----CCHHHHHHHHHHHHHhcc----CCCh--hhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHH
Q 002091 594 DKEIFMLFSLINL----TGPNVQQRILQTFNALCR----SPSA--GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLF 663 (968)
Q Consensus 594 ~~~i~~l~~ll~~----~~~~~~~~al~~L~~L~~----~~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L 663 (968)
...+..+..++.. .++.+++.++-++..|.. .... .+. +. .....|.+.+..++.+-+..++++|
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~---v~--~i~~~l~~~~~~~~~~~~~~~LkaL 464 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDEL---LQ--PLHDLLSQSSDRAKEEEIVLALKAL 464 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGG---TH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHH---HH--HHHHHHHHHHhcCChHHHHHHHHHh
Confidence 4566667777653 456677766666655542 2111 110 00 1233344455667777888899999
Q ss_pred HHhccCCChhHHHHhhccccHHHHHHHhcc------CCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHHhhcC
Q 002091 664 CCLVDDGDEAIIREHVGQKCLETLVTIIQS------SHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNG 736 (968)
Q Consensus 664 ~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~------~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~ 736 (968)
.|+. ....++.|.+++.. .....++.+|+.+|.+++. .+...+ +.+..+..+.
T Consensus 465 GN~g------------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~ 524 (1056)
T 1lsh_A 465 GNAG------------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNV 524 (1056)
T ss_dssp HHHT------------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCT
T ss_pred hccC------------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCC
Confidence 9996 12356667777642 1245688889999999987 554433 3355666553
Q ss_pred CCCCCchhHHHHHHHHHHhhcc
Q 002091 737 RQNDPNRFQVVENAVGALRRFT 758 (968)
Q Consensus 737 ~~~~~~~~~v~e~a~~aL~~L~ 758 (968)
. .+.++|-.|+.+|....
T Consensus 525 ~----e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 525 A----IKSELRIRSCIVFFESK 542 (1056)
T ss_dssp T----SCHHHHHHHHHHHHHTC
T ss_pred C----CChHHHHHHHHHHHHHC
Confidence 2 56788888888776543
No 205
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=74.39 E-value=56 Score=32.64 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=75.6
Q ss_pred chhHHHHHHhhcc------------ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHH
Q 002091 379 DDAVESIVRSLGR------------RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLE 446 (968)
Q Consensus 379 ~~~v~~lv~~L~~------------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~ 446 (968)
.+|+..++..|.. +.+.+..++.+|+.+..+......+...++++..|+..|.+.++.++..++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4566666666531 1245778899999998866666655555889999999999999999999999988
Q ss_pred hccCCch--h-HHHH----------HhCCchHHHHHHHhc-CCHHHHHHHHHHHHHh
Q 002091 447 NLSFSDD--N-VVQM----------AKANYFKHLLQRLSA-GPESVKMRMATTLAEM 489 (968)
Q Consensus 447 ~Ls~~~~--n-~~~i----------~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L 489 (968)
.+|..+. + ...+ .+...+.++++.|+. .+.+.+..+...+-.+
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 8874332 3 2222 234567778888874 3566665555555444
No 206
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.60 E-value=9.9 Score=31.15 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=37.7
Q ss_pred CcccccccccCCC-----Cceec--CCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 264 QSFYCPITRDVMV-----DPVET--SSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 264 ~~~~cpi~~~~m~-----dpv~~--~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
..-+|.||++=.- +|.+. .|+...||.|.+-=..+|+..||+|+.++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3457999987532 45554 4788999999997677899999999998853
No 207
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=72.29 E-value=47 Score=41.60 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=102.8
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHhc----cCchhhHHHhhcCchHHHHH----hhhcCCHHHHHHHHHHHHHhcC
Q 002091 465 KHLLQRLSA----GPESVKMRMATTLAEME----LTDHHKASLLEGNVLGPLLH----LVSRGDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 465 ~~Lv~~L~~----~~~~~~~~aa~~L~~L~----~~~~~~~~i~~~g~i~~Lv~----lL~~~~~~~~~~a~~aL~~Ls~ 532 (968)
..+..++.. .++.++..+.-++.+|. .....+ ....++.+.+ .+..++.+-+..++++|+|+-.
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 444455543 35667777777776663 221111 1123444444 4456778889999999999954
Q ss_pred CCccHHHHHHcCChHHHHHHhccc----CCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhh--cc
Q 002091 533 VPQNGLQMIKEGAVGPLVDLLLHH----SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI--NL 606 (968)
Q Consensus 533 ~~~~~~~i~~~g~v~~Lv~lL~~~----~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll--~~ 606 (968)
...++.|..++... ...+..++..|+++|.+++.... ..+-..++.+. ..
T Consensus 470 ----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--------------~~v~~il~~i~~n~~ 525 (1056)
T 1lsh_A 470 ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--------------RKVQEIVLPIFLNVA 525 (1056)
T ss_dssp ----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--------------HHHHHHHHHHHHCTT
T ss_pred ----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch--------------HHHHHHHHHHhcCCC
Confidence 13567777777531 11124577789999988874210 12344566666 46
Q ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhcc-CChhHHHHHHHHHHHhccCCCh
Q 002091 607 TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH-DNENVRANAVKLFCCLVDDGDE 672 (968)
Q Consensus 607 ~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~Ls~~~~~ 672 (968)
.++++|..|+..|.... |.. ..+..+...+.. .+..|.......|.+++....+
T Consensus 526 e~~EvRiaA~~~Lm~t~--P~~----------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 526 IKSELRIRSCIVFFESK--PSV----------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp SCHHHHHHHHHHHHHTC--CCH----------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred CChHHHHHHHHHHHHHC--cCH----------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 68889988888876542 222 235556666655 5788888888899999844433
No 208
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=71.94 E-value=18 Score=37.96 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=111.1
Q ss_pred HHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCC
Q 002091 659 AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQ 738 (968)
Q Consensus 659 a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~ 738 (968)
+...|.-| -++...+.-++...++..+..+++. .+.++..+....|...+.....+..- -...+|.++..+...
T Consensus 263 ~FDLL~LL--mHdSnAIDGFVk~DGv~~I~TvinY-pN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h-- 336 (619)
T 3c2g_A 263 TFDLLGLL--LHDSDAIDGFVRSDGVGAITTVVQY-PNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIH-- 336 (619)
T ss_dssp HHHHHHHH--CCSHHHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHC--
T ss_pred HHHHHHHH--hcccccccceeecccceeEEEEeec-CCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccC--
Confidence 33344444 3455667777788888888888877 45667777777776666533222111 123467777777742
Q ss_pred CCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcC-------ChHHHHHHHHHHhhhcccCCCCCCCC
Q 002091 739 NDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG-------TTLTKEHAATSLARFSKNSLGLSRPI 811 (968)
Q Consensus 739 ~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~v~~~Aa~aL~nl~~~s~~l~~~~ 811 (968)
+++++.....+.|+|..++ ...+.+..+..|+++.|.+.+... +..-+..||..++|-...-.+
T Consensus 337 ---~eDdvvYSGTGFLSNVVAH-Kq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNN----- 407 (619)
T 3c2g_A 337 ---PDDEVIYSGTGFLSNVVAH-KQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNN----- 407 (619)
T ss_dssp ---CCHHHHHHHHHHHHHHSTT-CHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ---CCcceEEecchHHHHHHhc-ccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhh-----
Confidence 5678999999999999998 777888888999999999887632 335566777777665321100
Q ss_pred CCCCcccccC-CCCCcccccCCCccCcccchHHhhcCChHHHHhhccCC
Q 002091 812 PKRKGFWCFS-PPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDP 859 (968)
Q Consensus 812 ~~~~~~~~~~-~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~ 859 (968)
|...- |.+. +-+...|.....+...+++..++..|..+|+-+
T Consensus 408 -----FLMmWIPm~N-Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 408 -----FLMMWIPTPN-GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp -----HHGGGSCCTT-SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred -----heeEEEecCC-CccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00000 1111 111112222333444567778888888888743
No 209
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=71.83 E-value=1.2 Score=37.51 Aligned_cols=46 Identities=9% Similarity=0.110 Sum_probs=35.8
Q ss_pred CCCCCCCCCCcCC-CCCCc-cCHhH-HHHHHHHHhhcccccccccCccc
Q 002091 299 GNNLCPLTMTVLD-TSILR-PNKTL-RQSIEEWKDRNTMITIASMKPKL 344 (968)
Q Consensus 299 ~~~~CP~t~~~l~-~~~l~-pn~~l-~~~I~~w~~~~~~~~~~~~~~~l 344 (968)
...+||+|...+. +..+. =++++ +.-|..|...++...||..+..+
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3578999999994 55554 38888 99999999876656899887775
No 210
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=71.35 E-value=34 Score=34.24 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCC--h--h-HHH------H
Q 002091 609 PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGD--E--A-IIR------E 677 (968)
Q Consensus 609 ~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~--~--~-~~~------~ 677 (968)
...+..++++|..++... .-...++...+++..|+..+.+.+..++..++.+|..++.... + + ... .
T Consensus 68 ~~~~~~~l~CLkalmn~~--~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNK--FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHTSSH--HHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCh--HHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 566777889998887542 2344567777889999999988899999999998887773322 1 1 111 1
Q ss_pred hhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC
Q 002091 678 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE 712 (968)
Q Consensus 678 ~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~ 712 (968)
.-+......+++.+....+.+.+.+++..+-.+..
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHC
Confidence 12344677788888876777888888877666655
No 211
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=70.14 E-value=47 Score=36.11 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=55.8
Q ss_pred CCchHHHHHHHhc-----------CCHHHHHHHHHHHHHhccCchhhHHHhh-cCchHHHHHhhhcCCHHHHHHHHHHHH
Q 002091 461 ANYFKHLLQRLSA-----------GPESVKMRMATTLAEMELTDHHKASLLE-GNVLGPLLHLVSRGDIQMKKVAVKALR 528 (968)
Q Consensus 461 ~g~v~~Lv~~L~~-----------~~~~~~~~aa~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 528 (968)
.+|+..|+.+|.. .+...+..++.+|..+..+......+.. ...|..|+..|.+..+.++..++..|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5566777777642 1235667788888888666655554444 889999999999999999999999999
Q ss_pred HhcCCCc
Q 002091 529 NLSSVPQ 535 (968)
Q Consensus 529 ~Ls~~~~ 535 (968)
.+|..++
T Consensus 188 ~lc~~~~ 194 (383)
T 3eg5_B 188 ALCILPQ 194 (383)
T ss_dssp HHHTCCS
T ss_pred HHHhCcC
Confidence 9997543
No 212
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=69.68 E-value=48 Score=33.08 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=85.8
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhcCCCCHHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccC-CCCHH
Q 002091 686 TLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA-PTNLE 764 (968)
Q Consensus 686 ~Lv~lL~~~~~~~~~~~Al~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~-~~~~~ 764 (968)
.+..-|......+++..|+-+|+.+...++ .++.+...+... .+..|++.++.++..++. . +++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~~~~~~---------~L~~ir~~va~D-----~~WrVre~lA~a~~~~~~~~-~pe 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYLSKDKE---------ILIFMRDEVSKD-----NNWRVQEVLAKAFDEFCKKI-EYK 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTSHH---------HHHHHHHTGGGC-----SCHHHHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhccCcHH---------HHHHHHHHhCCC-----CCccHHHHHHHHHHHHHHhc-CHH
Confidence 444444444556889889988888721211 244444423221 567899999999998884 2 222
Q ss_pred HHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHh
Q 002091 765 WQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLL 844 (968)
Q Consensus 765 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~ 844 (968)
..++.+..++.++++.+|+.|...+.-.+.. +. .. ..
T Consensus 139 --------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~-------~k-----------------------~d---- 175 (240)
T 3l9t_A 139 --------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY-------FK-----------------------EN---- 175 (240)
T ss_dssp --------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT-------TT-----------------------TC----
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch-------hh-----------------------cC----
Confidence 2678899999999999999999887543321 00 00 00
Q ss_pred hcCChHHHHhhccCCChhhhHHHHHHHHhhh
Q 002091 845 EANAVRPLVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 845 ~~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
-.-+++.|-.+..+++.-|+.+..++|..++
T Consensus 176 p~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 176 PNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 0113455555666778889999999999998
No 213
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=67.65 E-value=1 Score=30.05 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.4
Q ss_pred CcccccccccCCCCceec
Q 002091 264 QSFYCPITRDVMVDPVET 281 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~ 281 (968)
+.|+||+|+.-+..|-.+
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 579999999888777554
No 214
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=66.62 E-value=1.1e+02 Score=33.03 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCc--hh-HHH----------HHh
Q 002091 394 EERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSD--DN-VVQ----------MAK 460 (968)
Q Consensus 394 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~--~n-~~~----------i~~ 460 (968)
..+..++.+|+.+..+......+...+.+|..|+..+.+..+.++..+...|..+|..+ ++ ... ..+
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e 214 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 214 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC
Confidence 45678889999998866666666665899999999999999999999999998888433 23 221 234
Q ss_pred CCchHHHHHHHhc-CCHHHHHHHHHHHHHhcc-Cc--hhhHHHh----hcCchHHHHHhhhc
Q 002091 461 ANYFKHLLQRLSA-GPESVKMRMATTLAEMEL-TD--HHKASLL----EGNVLGPLLHLVSR 514 (968)
Q Consensus 461 ~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~-~~--~~~~~i~----~~g~i~~Lv~lL~~ 514 (968)
...+..++..|+. .+.+.+..+...+-.+.. .+ +.|..+. ..|..+.+-+ |+.
T Consensus 215 ~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 215 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred CCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 5668888988887 466776655555544522 22 3344333 4555444444 554
No 215
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=63.81 E-value=50 Score=35.90 Aligned_cols=124 Identities=20% Similarity=0.189 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhH-HH----------H
Q 002091 609 PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI-IR----------E 677 (968)
Q Consensus 609 ~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~-~~----------~ 677 (968)
...+..+++||..++... .-...++...+++..|+..+.+.+..++..++.+|..++....+.. .. .
T Consensus 72 ~~~~~~~l~CLkalmN~~--~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNK--FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHTSSH--HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCH--HHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 566777889998887543 2334567777889999999988889999999988877773332111 11 1
Q ss_pred hhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC---CHHh----HHHHHHcCCHHHHHHHhhc
Q 002091 678 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE---VPQF----TQWLLDAGALPIVLNFLKN 735 (968)
Q Consensus 678 ~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~---~~~~----~~~l~~~g~l~~Lv~lL~~ 735 (968)
.-+......++..+....+.+.+.+++..+-.+.. +.+. +..+...|..+ ++.-|+.
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~-il~~Lr~ 213 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELRE 213 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTT
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHhc
Confidence 12345677899988876778888888877766655 3333 33344445444 4455554
No 216
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=62.23 E-value=72 Score=31.84 Aligned_cols=132 Identities=12% Similarity=0.117 Sum_probs=85.8
Q ss_pred cchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHH-hhccCCHHHHHHHHHHHHHhccCCChhhHHHHHhhcC
Q 002091 561 SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFS-LINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCS 639 (968)
Q Consensus 561 ~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~-ll~~~~~~~~~~al~~L~~L~~~~~~~~~~~~i~~~g 639 (968)
.+++..|+.+|+.+ . . ....++.+.. +....+-.+++.+..++..+|..... ..
T Consensus 85 deVR~~Av~lLg~~-~-~--------------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---------e~ 139 (240)
T 3l9t_A 85 YQVRMYAVFLFGYL-S-K--------------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---------KK 139 (240)
T ss_dssp HHHHHHHHHHHHHT-T-T--------------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT---------TT
T ss_pred hHHHHHHHHHHHhc-c-C--------------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH---------HH
Confidence 57788888877776 2 1 1245566665 55567788999999998888741011 12
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHH
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQ 718 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~ 718 (968)
.++.+...+.+++..+|+.|...+.--+.. .. .......+-.++.-+..+.+.-++.+....|..++. +++...
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~----~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY----FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT----TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch----hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 578888999999999999999877543311 00 001112233444445555677788888889999888 777665
Q ss_pred HHHH
Q 002091 719 WLLD 722 (968)
Q Consensus 719 ~l~~ 722 (968)
.+++
T Consensus 215 ~~~~ 218 (240)
T 3l9t_A 215 IELK 218 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 217
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=59.85 E-value=1.6e+02 Score=31.93 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=87.0
Q ss_pred chhHHHHHHhhcc------------ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcCCCHHHHHHHHHHHH
Q 002091 379 DDAVESIVRSLGR------------RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLE 446 (968)
Q Consensus 379 ~~~v~~lv~~L~~------------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~ 446 (968)
.+|+..|+..|.. +...+..++.+|+.+..+......+...++++..|+..+.+..+.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4556666666521 1245778899999998866655555555889999999999999999999998888
Q ss_pred hccCCch--h-HHH----------HHhCCchHHHHHHHhc-CCHHHHHHHHHHHHHhcc-Cc--hhhH----HHhhcCch
Q 002091 447 NLSFSDD--N-VVQ----------MAKANYFKHLLQRLSA-GPESVKMRMATTLAEMEL-TD--HHKA----SLLEGNVL 505 (968)
Q Consensus 447 ~Ls~~~~--n-~~~----------i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~L~~-~~--~~~~----~i~~~g~i 505 (968)
.+|..+. + ... ..+...+.+++..|.. .+.+.+..+...+-.+.. .+ +.|. .+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8874332 2 211 2244567788888874 356666555555544422 22 3333 33345554
Q ss_pred HHHHHhhhc-CCHHH
Q 002091 506 GPLLHLVSR-GDIQM 519 (968)
Q Consensus 506 ~~Lv~lL~~-~~~~~ 519 (968)
+. +.-|+. +++.+
T Consensus 206 ~i-l~~Lr~~~~~~L 219 (386)
T 2bnx_A 206 QV-LQELREIENEDM 219 (386)
T ss_dssp HH-HHHHTTCCCHHH
T ss_pred HH-HHHHhccCChhH
Confidence 44 444444 44433
No 218
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=56.51 E-value=86 Score=32.51 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=93.1
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHh--hcCChHHHHHHHHHHhhhccc
Q 002091 726 LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLL--EYGTTLTKEHAATSLARFSKN 803 (968)
Q Consensus 726 l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~v~~~Aa~aL~nl~~~ 803 (968)
+..+..+++++.....++..--+.|+..|.-++. +-++--.+..+. .+.|-.++ ...++.+++.|+.+|+....+
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH--Di~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH--DYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT--SHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh--hHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 3445666766421111344467888888888887 666666666543 44454444 234568899999999887755
Q ss_pred CCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhh--cCChHHHHhhc----cC---CChhhhHHHHHHHHhh
Q 002091 804 SLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLE--ANAVRPLVRVL----ED---PDHGACEASLDALVTL 874 (968)
Q Consensus 804 s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~--~g~i~~Lv~lL----~~---~~~~v~~~al~aL~~L 874 (968)
+|. ....+.+ -..+..++.-| .. ....++.+-+++|..|
T Consensus 101 NP~--------------------------------Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L 148 (315)
T 3qml_C 101 NPP--------------------------------VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNEL 148 (315)
T ss_dssp CHH--------------------------------HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHS
T ss_pred CHH--------------------------------HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 532 1111111 12333333322 22 2345778888888888
Q ss_pred h-cccccchhhHHHHhcCcHHHHHHHhcCC--ChHHHHHHHHHHHHHhc
Q 002091 875 I-EGERLQNGSKVLEDANAIDRMVRFLSSP--SPKLQEKALDSVERIFR 920 (968)
Q Consensus 875 ~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 920 (968)
+ ++..+ ...++..|.++.... ++.++.+++.++..++.
T Consensus 149 ~~~~~~F--------~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 149 PVTSEDL--------PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp CCCSTTC----------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred hcChHhh--------hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 8 43211 145778888888656 89999999999999985
No 219
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=56.24 E-value=4e+02 Score=33.69 Aligned_cols=300 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhh-ccCCHHHHHHHHHHHHHhcc
Q 002091 546 VGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI-NLTGPNVQQRILQTFNALCR 624 (968)
Q Consensus 546 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll-~~~~~~~~~~al~~L~~L~~ 624 (968)
+..++..+.+++.+ ...+..|-..|..+-..+ ++.......+. .+.++.++..++.+|.+...
T Consensus 13 l~~~l~~~~~p~~~-~~~r~~Ae~~L~~~~~~p---------------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~ 76 (1204)
T 3a6p_A 13 LVKAVTVMMDPNST-QRYRLEALKFCEEFKEKC---------------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVK 76 (1204)
T ss_dssp HHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHC---------------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-hHHHHHHHHHHHHHHhCc---------------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q ss_pred ---CCChhhHHHHHhhcCchHHHHHhhcc---CChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHH
Q 002091 625 ---SPSAGNIKTTLTQCSAIPVLVQLCEH---DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE 698 (968)
Q Consensus 625 ---~~~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~ 698 (968)
..-+.+.+..+++. .+..+...... ....++...+.++..++...-++. -...++.|+.++.. +..
T Consensus 77 ~~W~~l~~e~k~~Ir~~-ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~--~~~ 148 (1204)
T 3a6p_A 77 FRWNGMSRLEKVYLKNS-VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ--GET 148 (1204)
T ss_dssp HSGGGSCHHHHHHHHHH-HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT--CHH
T ss_pred HhcccCCHHHHHHHHHH-HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC--CHH
Q ss_pred HHHHHHHHHhcCCCC------------HHhHHHHHHcCCHHHHHHHhh-----------------------cCCCCCCch
Q 002091 699 EIASAMGILSKLPEV------------PQFTQWLLDAGALPIVLNFLK-----------------------NGRQNDPNR 743 (968)
Q Consensus 699 ~~~~Al~~L~nL~~~------------~~~~~~l~~~g~l~~Lv~lL~-----------------------~~~~~~~~~ 743 (968)
....++.+|..|+.+ ...++.+.+. ++.++.++. . .+
T Consensus 149 ~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~------~~ 220 (1204)
T 3a6p_A 149 QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQ------AN 220 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhh------hh
Q ss_pred hHHHHHHHHHHhhccCCCCHHHHHHHHHcC--ChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccC
Q 002091 744 FQVVENAVGALRRFTAPTNLEWQKRAAEAG--VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFS 821 (968)
Q Consensus 744 ~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g--~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~ 821 (968)
..+...++.++.++...-... .+.+.. .++.+..++. ++.++..|+.+|..+.
T Consensus 221 ~~l~~~aL~~l~~~l~Wi~~~---~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~-------------------- 275 (1204)
T 3a6p_A 221 CRVGVAALNTLAGYIDWVSMS---HITAENCKLLEILCLLLN--EQELQLGAAECLLIAV-------------------- 275 (1204)
T ss_dssp HHHHHHHHHHHHTTTTTSCHH---HHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHhccCHH---HHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHH--------------------
Q ss_pred CCCCcccccCCCccCcc-------cchHHhhcCChHHHHhhc--------cCCChhhhHHHHHHHHhhhcccccchhhHH
Q 002091 822 PPPEIGCQVHGGLCGIE-------SSFCLLEANAVRPLVRVL--------EDPDHGACEASLDALVTLIEGERLQNGSKV 886 (968)
Q Consensus 822 ~~~~~~c~~h~~~c~~~-------~~~~l~~~g~i~~Lv~lL--------~~~~~~v~~~al~aL~~L~~~~~~~~~~~~ 886 (968)
+.. ....++....+..++..+ .+.+.++++..+..+..+. .....
T Consensus 276 --------------s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg------~~l~~ 335 (1204)
T 3a6p_A 276 --------------SRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALG------NQLCA 335 (1204)
T ss_dssp --------------TCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred --------------hCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHH------HHHHH
Q ss_pred HHh-----------cCcHHHHHHHhcCCChHHHHHHHHHHHHHhcCh
Q 002091 887 LED-----------ANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP 922 (968)
Q Consensus 887 i~~-----------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 922 (968)
+.+ .+.++.+..+..+++..+-..++.....+++..
T Consensus 336 l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~ 382 (1204)
T 3a6p_A 336 LLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE 382 (1204)
T ss_dssp HHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred HHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
No 220
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=55.33 E-value=8.5 Score=32.30 Aligned_cols=53 Identities=26% Similarity=0.431 Sum_probs=41.4
Q ss_pred CCCCcccccccccCCCCceecCCc------hhhhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 002091 261 EPLQSFYCPITRDVMVDPVETSSG------QTFERSAIEKWFSDGNNLCPLTMTVLDTSI 314 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~~g------~t~~r~~i~~~~~~~~~~CP~t~~~l~~~~ 314 (968)
.|.+.+.|||++++-..-|-+... .-||..++.+-...| ..=|.||+++.+..
T Consensus 23 C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~sM 81 (102)
T 2kkx_A 23 CPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITASI 81 (102)
T ss_dssp CCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCTTT
T ss_pred CCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCHhh
Confidence 366899999999999998887532 139999999987664 46799999886653
No 221
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=54.64 E-value=24 Score=33.25 Aligned_cols=70 Identities=10% Similarity=0.173 Sum_probs=56.3
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhc
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSK 709 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~n 709 (968)
++..|..-+.++++.++..|+.+|-.+..++......++.....+..|++++....+..++..++.++..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 5667778888899999999999999999777777777777778888999998765667787777766544
No 222
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=49.88 E-value=4.2 Score=25.77 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=12.8
Q ss_pred CcccccccccCCCCce
Q 002091 264 QSFYCPITRDVMVDPV 279 (968)
Q Consensus 264 ~~~~cpi~~~~m~dpv 279 (968)
..|.||+|+..|-||=
T Consensus 2 ~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCEECTTSSCEESSHH
T ss_pred CcccCccccccCcChH
Confidence 4688999998887773
No 223
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=48.09 E-value=1.8e+02 Score=27.34 Aligned_cols=78 Identities=8% Similarity=0.096 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhH--HHHHHHHHHHHHHHHHH
Q 002091 44 KELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNC--RAIVKRLKDTAREISQA 121 (968)
Q Consensus 44 ~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~~~Sklyll~~~--~~~~~~~~~~~~~~~~~ 121 (968)
++..++...|.--++||....+. |+-...|..-+.-|..+..+.+.+... |-++.+ ..+...+..+.+.|.+.
T Consensus 8 ~e~~~~~d~L~~ql~El~~~~l~--~gE~eeLe~e~~rL~nae~l~~~~~~a---~~~L~~~e~~~~~~L~~a~~~L~~l 82 (175)
T 4abx_A 8 RERARQIDLLAFQVQEISEVSPD--PGEEEGLNTELSRLSNLHTIAQAAAGG---VELLSDGDLNAAGLIGEAVRALNAG 82 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC--TTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHHCHHHHHHHHHHH---HHHHhCCcchHHHHHHHHHHHHHHH
Confidence 46678999999999999887753 344577888888888888888887654 233332 25777888888888775
Q ss_pred hcCCC
Q 002091 122 LGILP 126 (968)
Q Consensus 122 l~~~p 126 (968)
-..-|
T Consensus 83 ~~~d~ 87 (175)
T 4abx_A 83 AKYDE 87 (175)
T ss_dssp HTTCH
T ss_pred HHhCh
Confidence 54434
No 224
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.00 E-value=73 Score=30.17 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=29.5
Q ss_pred ccCchHHHHHHHHHHHHHhhcccccchhHHHHHHHHHhhhhhccCChhhh
Q 002091 130 LDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYA 179 (968)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (968)
+++++|=++++..++++.+.........-.....++..++..+++|....
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI 115 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKI 115 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 57889999999999888764322221222233456666666666776543
No 225
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=45.67 E-value=31 Score=32.47 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=53.9
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC-CChHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS-PSPKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l 918 (968)
++..|..-|.+.++.++..|+..|-.+. +.. ......+.....++.++.++.. .++.|+++++.++..-
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG--~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCG--KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC--HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh--HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 6777888888999999999999998888 322 2456677777778888888854 6789999999988654
No 226
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=44.93 E-value=25 Score=32.17 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=53.5
Q ss_pred CChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002091 847 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI 918 (968)
Q Consensus 847 g~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 918 (968)
.++..|..-|.+.++.++..|+..|-.+. +.. ......+.....++.+..++...++.|+++++.++...
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG--~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCG--KIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC--HHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 36777888888999999999999888888 322 24455666666777777887667899999999988643
No 227
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=42.86 E-value=9.4 Score=34.07 Aligned_cols=46 Identities=4% Similarity=0.039 Sum_probs=35.8
Q ss_pred CCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCC
Q 002091 300 NNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVS 346 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~ 346 (968)
..+||+|...+ ++..+.-++++ +.-|..|...+. ..||..+..+..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQV-FSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC-CBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCc-CCCCCCCccCCC
Confidence 46899999998 56666667777 999999997543 579988877754
No 228
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.30 E-value=40 Score=31.10 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=55.5
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC------CChHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS------PSPKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l 918 (968)
++..|..=|.+.|+.++..|+..|-.+. +.. ......+.....++.|+.++.. .++.|+++++.++..-
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG--~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCG--EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 6777888888999999999999999998 422 2566777888888889988853 4789999999988754
No 229
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=41.92 E-value=12 Score=29.80 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=33.9
Q ss_pred CCCCCCCCCcCCC-CCCc-cCHhH-HHHHHHHHhhcccccccccCccc
Q 002091 300 NNLCPLTMTVLDT-SILR-PNKTL-RQSIEEWKDRNTMITIASMKPKL 344 (968)
Q Consensus 300 ~~~CP~t~~~l~~-~~l~-pn~~l-~~~I~~w~~~~~~~~~~~~~~~l 344 (968)
...||+|...+.. ..+. =++++ +.-|.+|...++...||..+.+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 4689999999854 4443 37887 99999999876556788877654
No 230
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.87 E-value=53 Score=30.27 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=56.5
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-----CCHHHHHHHHHHHhcC
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-----HNEEEIASAMGILSKL 710 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~~~~~~Al~~L~nL 710 (968)
++..|..-+.+.++.++..|+.+|-.++.++......++.....+..|++++... .+..++...+.++..-
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 5667778888899999999999999999888777777887888899999998642 4667777777666443
No 231
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=41.25 E-value=49 Score=30.46 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=56.4
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-----CCHHHHHHHHHHHhcC
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-----HNEEEIASAMGILSKL 710 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~~~~~~Al~~L~nL 710 (968)
++..|..-+.++++.++..|+.+|-.++.++......++.....+..|++++... .+..++..++.++..-
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 5667777888999999999999999999777777777887888899999988742 3667777777666443
No 232
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=40.09 E-value=46 Score=31.47 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=54.7
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC-----CCHHHHHHHHHHHhc
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-----HNEEEIASAMGILSK 709 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~~~~~~Al~~L~n 709 (968)
++..|..-+.++++.++..|+.+|-.+..++......++.....+..|++++... .+..++..++.++..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 5667778888999999999999999999777777777777778899999998632 356777776666544
No 233
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.90 E-value=43 Score=31.74 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=55.3
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC------CChHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS------PSPKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l 918 (968)
++..|..-|.+.|+.++..|+..|-.+. +.. ...+..+.+...++.|+.++.. .++.|+++++.++..-
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG--~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCG--RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH--HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 6778888888999999999999999988 321 2566677788888889998852 4688999999999765
No 234
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.72 E-value=35 Score=34.06 Aligned_cols=70 Identities=11% Similarity=0.204 Sum_probs=53.9
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhc
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSK 709 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~n 709 (968)
++..|..-+.+.++.++..|+.+|-.++.+.......++.....+..|++++....+..++..++.+|..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5677778888899999999999999998777766677777777888888888765666676666655443
No 235
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=39.12 E-value=52 Score=30.32 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=55.0
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcC------CChHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS------PSPKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l 918 (968)
++..|..-+.+.|+.++..|+..|-.+. +.. ......+.....++.|+.++.. .++.|+++.+.++..-
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG--~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCG--KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC--HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 6778888888999999999999998888 322 2556777788888889988853 5788999999988754
No 236
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=38.96 E-value=8 Score=30.81 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=32.8
Q ss_pred ccccccccCCC------CceecCCchh--hhHHHHHHHHhcCCCCCCCCCCcCCCCCCccC
Q 002091 266 FYCPITRDVMV------DPVETSSGQT--FERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318 (968)
Q Consensus 266 ~~cpi~~~~m~------dpv~~~~g~t--~~r~~i~~~~~~~~~~CP~t~~~l~~~~l~pn 318 (968)
-.||||+..+. .-.++..+.- -||...-+-++.--+.||.|++.+--..|..+
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~ 69 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRR 69 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChH
Confidence 46999998654 1112233221 34666666666556789999998865555544
No 237
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=38.36 E-value=1.1e+02 Score=27.69 Aligned_cols=70 Identities=9% Similarity=0.180 Sum_probs=53.1
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcC
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKL 710 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL 710 (968)
++..|..-+.++++.++..|+.+|-.++.++......++.....+..|+.++.. .+..++...+..+...
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHH
Confidence 566677778888999999999999999877777666677677788888888864 4567777777666443
No 238
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=37.84 E-value=12 Score=34.71 Aligned_cols=47 Identities=4% Similarity=0.101 Sum_probs=36.5
Q ss_pred CCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCC
Q 002091 300 NNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVST 347 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~ 347 (968)
...||+|...+ ++..+.-++++ +.-|..|...+. ..||..+..+...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQV-FSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC-CBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCC-CcCCCCCccCCCC
Confidence 36899999998 56666667777 999999998653 5799888877554
No 239
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.34 E-value=44 Score=33.10 Aligned_cols=68 Identities=10% Similarity=0.183 Sum_probs=51.0
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHH
Q 002091 640 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGIL 707 (968)
Q Consensus 640 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L 707 (968)
++..|..-+.++++.++..|+.+|-.+..+.......++.....+..|+.++....+.+++..++..+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 56677778888999999999999999986666666667777778888888877655566665555443
No 240
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=35.45 E-value=24 Score=28.17 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=24.4
Q ss_pred CCcccccccccCCCCceecCC----chhhhHHHHHHHH
Q 002091 263 LQSFYCPITRDVMVDPVETSS----GQTFERSAIEKWF 296 (968)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~----g~t~~r~~i~~~~ 296 (968)
-.-++|-+|.+=+.|-.-+.| +|.||=.|-+..+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHH
Confidence 356899999999998765543 7889855544443
No 241
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=34.22 E-value=3.8e+02 Score=27.00 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=46.0
Q ss_pred ChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHHHH
Q 002091 774 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLV 853 (968)
Q Consensus 774 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv 853 (968)
+++.++.+..+.+.++|+..+..+........ + .-..+++.|.
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-----------------------------------~--l~~~~l~~L~ 96 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-----------------------------------E--LLPHVINVVS 96 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-----------------------------------G--GHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-----------------------------------H--HHHHHHHHHH
Confidence 45666666666778999999988877762110 0 2224688888
Q ss_pred hhccCCChhhhHHHHHHHHhhh
Q 002091 854 RVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 854 ~lL~~~~~~v~~~al~aL~~L~ 875 (968)
.+|.+.++.|...++.+..++-
T Consensus 97 ~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 97 MLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHH
Confidence 8998888888888888777764
No 242
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=32.93 E-value=18 Score=27.49 Aligned_cols=42 Identities=33% Similarity=0.478 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002091 52 RIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECS 93 (968)
Q Consensus 52 ~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~ 93 (968)
.|..++||+...-.|.-.+...+.+.|..-+..||.|+..|.
T Consensus 15 ~LL~VIeEmgkdIrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 456677888633212222346788999999999999999996
No 243
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.69 E-value=51 Score=32.80 Aligned_cols=69 Identities=12% Similarity=0.220 Sum_probs=53.8
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHh-cCCChHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFL-SSPSPKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l 918 (968)
++..|..=|.+.|+.++..|+..|-.+. +.. ......+.....++.|..++ ...++.|+++++.++...
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG--~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCG--QTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--HHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc--hHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 6778888888999999999999998888 322 14556666777777777777 446789999999998765
No 244
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=32.68 E-value=1.4e+02 Score=32.34 Aligned_cols=67 Identities=9% Similarity=0.119 Sum_probs=49.4
Q ss_pred cCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccccCCCccCcccchHHhhcCChHH
Q 002091 772 AGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRP 851 (968)
Q Consensus 772 ~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~ 851 (968)
.++++.++.+-.+.+.++|+..+..|...+... ...+ ..+++.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-----------------------------------~el~--~~~l~~ 104 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-----------------------------------IELL--LKLIAN 104 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----------------------------------GGGH--HHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-----------------------------------HHHH--HHHHHH
Confidence 467888888888888999999999888776311 1111 246788
Q ss_pred HHhhccCCChhhhHHHHHHHHhhh
Q 002091 852 LVRVLEDPDHGACEASLDALVTLI 875 (968)
Q Consensus 852 Lv~lL~~~~~~v~~~al~aL~~L~ 875 (968)
|..+|.+.++.|...++.+..++-
T Consensus 105 L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 105 LNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888888888988888888777764
No 245
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.54 E-value=32 Score=26.38 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=33.9
Q ss_pred CCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccC
Q 002091 300 NNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLV 345 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~ 345 (968)
...||+|...+ ++..+.-++.+ +.-|.+|...+ ...||..+..+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS-SPKCTACQESIV 61 (66)
T ss_dssp CEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS-SCCCTTTCCCCC
T ss_pred CCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC-cCCCCCCCcCCC
Confidence 56899999988 56666667777 99999999643 357888776654
No 246
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=31.07 E-value=63 Score=32.77 Aligned_cols=127 Identities=9% Similarity=0.061 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhccChhHHHHhhhccChHHHHH-HhhcCCCHHHHHHHHHHHHhccCCch-hHHHHHhCCchHHHHHHHhc
Q 002091 396 RKLAVALLLELSTCNTLRDQIGDVQGCILLLV-TMASSDDNQASRDAQELLENLSFSDD-NVVQMAKANYFKHLLQRLSA 473 (968)
Q Consensus 396 ~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~s~~~~~~~~a~~~L~~Ls~~~~-n~~~i~~~g~v~~Lv~~L~~ 473 (968)
+-.++..++.+..++.... .+..++ ..+.+..+..+..+++++.|+-.++. .+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~~~~~~-------~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYSS-------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCGG-------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchHH-------HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 4456666666655443222 222222 22335577888999999999998888 56666543333444444311
Q ss_pred --------CCHHHHHHHHHHHHHhccCch-hhHHHhhcCchHHHHHhhhc---------CCHHHHHHHHHHHHHhcC
Q 002091 474 --------GPESVKMRMATTLAEMELTDH-HKASLLEGNVLGPLLHLVSR---------GDIQMKKVAVKALRNLSS 532 (968)
Q Consensus 474 --------~~~~~~~~aa~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~aL~~Ls~ 532 (968)
.+..++..++..++|++..-. .+. +......+++.+.. .+++....++-||++|..
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 245688888899999864211 010 12233445555542 367888888888888864
No 247
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=30.08 E-value=9.5e+02 Score=30.39 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcc
Q 002091 742 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 802 (968)
Q Consensus 742 ~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 802 (968)
.+..+++-+...-..+-...+.-+++.+ +..|+....+++..-...|...|..++.
T Consensus 412 ~~~~v~~Fg~~lY~~lF~~fd~~~qqeV-----l~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 412 QDQRIILFGSLLYKYAFKFFDTYCQQEV-----VGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp SSHHHHHHHHHHHHHHHHSSCHHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 4456666665544333333244445554 5677777777866555568888887773
No 248
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=29.97 E-value=16 Score=26.26 Aligned_cols=12 Identities=17% Similarity=0.492 Sum_probs=10.6
Q ss_pred CCCccccccccc
Q 002091 262 PLQSFYCPITRD 273 (968)
Q Consensus 262 ~~~~~~cpi~~~ 273 (968)
.|+++.||+|+.
T Consensus 27 lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 27 LPDDWCCPVCGV 38 (46)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCcCCCC
Confidence 679999999985
No 249
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=29.59 E-value=16 Score=31.94 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=36.0
Q ss_pred CCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCCc
Q 002091 300 NNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTE 348 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~ 348 (968)
...||+|...+ ++..+.-++.+ +.-|.+|....+ ..||..+..+...+
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMG-SYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc-CcCCCCCCCCCHhh
Confidence 46899999998 55556667777 999999998743 47888877765433
No 250
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=28.91 E-value=2.3e+02 Score=24.44 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002091 17 EALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRD-LSHSEGLNSAIEILNREIKGAKELTTECS 93 (968)
Q Consensus 17 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~l~~lleel~~~~-~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~ 93 (968)
.++..|.++..+=......+ ++....+-+.+..+..+|.+..+.. ...++....|+.++..+...+-+.+..|.
T Consensus 5 ~ll~KL~~ll~~E~~l~~gv---~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 5 NLIPKLGELLTEEFKLHKGV---KKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555443322222232 5677888888889999999887543 22567889999999999999999888764
No 251
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.97 E-value=25 Score=28.41 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=34.8
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhc----ccccccccCcccCC
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRN----TMITIASMKPKLVS 346 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~----~~~~~~~~~~~l~~ 346 (968)
....||+|...+ ++..+.-++.+ +.-|..|.... +...||..+..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 357899999988 44555566666 89999998773 24678887766544
No 252
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=27.00 E-value=5.4e+02 Score=26.58 Aligned_cols=133 Identities=12% Similarity=0.085 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhccChhHHHHhhh-ccChHHHHHHhhcCCCHHHHHHHHHHHHhccCCch-hHHHHHh--CCchHHHHH
Q 002091 394 EERKLAVALLLELSTCNTLRDQIGD-VQGCILLLVTMASSDDNQASRDAQELLENLSFSDD-NVVQMAK--ANYFKHLLQ 469 (968)
Q Consensus 394 ~~~~~A~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~s~~~~~~~~a~~~L~~Ls~~~~-n~~~i~~--~g~v~~Lv~ 469 (968)
+....|+..|.++|-.-.+=.+|.. ....+..|+ +..+.++.+++.|..++...-.+++ ....+.+ ...+..+..
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 4567788888888876666555554 233344444 3345677889999998887765544 3333333 455555554
Q ss_pred HHhc-------CCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcC--CHHHHHHHHHHHHHhc
Q 002091 470 RLSA-------GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLS 531 (968)
Q Consensus 470 ~L~~-------~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls 531 (968)
-|.. ....+...-+.+|..|..++. .+ ...++..|.+++..+ ++.++..++..+..+-
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 4433 234555566677777765542 12 234667888887766 7888887777776664
No 253
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.54 E-value=31 Score=27.80 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=34.7
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhh----cccccccccCcccCCC
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDR----NTMITIASMKPKLVST 347 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~----~~~~~~~~~~~~l~~~ 347 (968)
....||+|...+ ++..+.-++.+ +.-|..|... ++...||..+..+...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 357899999988 45556566666 8888899866 3346788877665443
No 254
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=26.54 E-value=16 Score=32.22 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=35.5
Q ss_pred CCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCCC
Q 002091 300 NNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVST 347 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~ 347 (968)
...||+|...+ ++..+.=++++ +.-|.+|...++ ..||..+..+...
T Consensus 18 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLEN 66 (118)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCGG
T ss_pred CCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-CCCCCCCCCcCHH
Confidence 46899999998 55555566777 999999998764 3788887776543
No 255
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.41 E-value=38 Score=30.00 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=38.8
Q ss_pred CCcccccccccCCCC-ceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCC
Q 002091 263 LQSFYCPITRDVMVD-PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (968)
Q Consensus 263 ~~~~~cpi~~~~m~d-pv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~ 312 (968)
++-|.|..|...+.+ +.....|.-||+.+..+-+ ...|+.|++++.+
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 367999999998876 6777889999999987654 4689999998865
No 256
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.86 E-value=77 Score=31.28 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=53.0
Q ss_pred ChHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 002091 848 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLS-SPSPKLQEKALDSVERI 918 (968)
Q Consensus 848 ~i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l 918 (968)
++..|..-|.+.|+.++..|+..|..+. +.. ......+.+...++.+..++. ..++.|+++++.++..-
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG--~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 113 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCG--APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTW 113 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH--HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--HHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 6777888888999999999999999988 322 245566666677777788774 45788999999888654
No 257
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.91 E-value=1.2e+02 Score=27.99 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=51.6
Q ss_pred chHHHHHhhc-cCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHH-HHHHhccC--CCHHHHHHHHHHHhc
Q 002091 640 AIPVLVQLCE-HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLET-LVTIIQSS--HNEEEIASAMGILSK 709 (968)
Q Consensus 640 ~i~~Lv~ll~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~-Lv~lL~~~--~~~~~~~~Al~~L~n 709 (968)
++..|..-+. ++++.++..|+.+|-.+..++......++.....+.. |++++... .+..++..++..+..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 5666777776 5789999999999999997777777777777788887 78888532 345676666655543
No 258
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.32 E-value=41 Score=25.39 Aligned_cols=40 Identities=10% Similarity=0.336 Sum_probs=29.3
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhc-cccccc
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRN-TMITIA 338 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~-~~~~~~ 338 (968)
....||+|...+ ++..+.=++.+ +.-|.+|...+ +...||
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP 61 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCS
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCc
Confidence 457899999988 55566667777 99999999752 234565
No 259
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=23.77 E-value=31 Score=29.11 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=34.7
Q ss_pred CCCCCCCCCcC-CCCCC-ccCHhH-HHHHHHHHhhcccccccccCcccCCCc
Q 002091 300 NNLCPLTMTVL-DTSIL-RPNKTL-RQSIEEWKDRNTMITIASMKPKLVSTE 348 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l-~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~~~ 348 (968)
...||+|...+ ++..+ .-++++ +.-|.+|...+ ..||..+..+...+
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCVTVTEPD 71 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCCGGG
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC--CCCCCCCCcCChhh
Confidence 46899999998 44445 456777 99999999765 47898877765433
No 260
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.59 E-value=25 Score=28.34 Aligned_cols=44 Identities=5% Similarity=-0.070 Sum_probs=33.0
Q ss_pred CCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccC
Q 002091 300 NNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLV 345 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~ 345 (968)
...||+|...+ ++..+.-++.+ +.-|.+|.... ..||..+..+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT--PRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC--SBCSSSCCBCC
T ss_pred CCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC--CcCCCcCcccc
Confidence 46899999988 44455556776 89999998764 46888877664
No 261
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.58 E-value=46 Score=29.37 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=38.7
Q ss_pred CcccccccccCCCC---ceecCCchhhhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 002091 264 QSFYCPITRDVMVD---PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (968)
Q Consensus 264 ~~~~cpi~~~~m~d---pv~~~~g~t~~r~~i~~~~~~~~~~CP~t~~~l~~~ 313 (968)
+-|.|..|...+.| +.....|.-||+.+..+-|.. ...|-.|++++...
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGG 82 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCch
Confidence 67999999999974 567788999999999887732 22799998887653
No 262
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.56 E-value=25 Score=26.13 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=11.6
Q ss_pred CCCCcccccccccC
Q 002091 261 EPLQSFYCPITRDV 274 (968)
Q Consensus 261 ~~~~~~~cpi~~~~ 274 (968)
..|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 36899999999863
No 263
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.22 E-value=28 Score=25.64 Aligned_cols=14 Identities=14% Similarity=0.484 Sum_probs=11.6
Q ss_pred CCCCcccccccccC
Q 002091 261 EPLQSFYCPITRDV 274 (968)
Q Consensus 261 ~~~~~~~cpi~~~~ 274 (968)
..|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 36899999999864
No 264
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=21.88 E-value=49 Score=25.51 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002091 52 RIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECS 93 (968)
Q Consensus 52 ~l~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~ 93 (968)
.|..++||+...-.|.-.+...+.+.|..-+..|+.|+..|.
T Consensus 19 ~LL~vIeEmgkdirPTyagsks~~ERLkRgI~hAr~LVRECl 60 (69)
T 2m1l_A 19 DLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECL 60 (69)
T ss_dssp HHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccchhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 445566777422111112335688899999999999999996
No 265
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.57 E-value=40 Score=26.32 Aligned_cols=47 Identities=11% Similarity=0.269 Sum_probs=34.0
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhh-cccccccccCcccC
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDR-NTMITIASMKPKLV 345 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~-~~~~~~~~~~~~l~ 345 (968)
....||+|...+ ++..+.=++.+ +.-|..|... ++...||..+..+.
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 357899999988 44556666777 9999999863 23457888776654
No 266
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.48 E-value=20 Score=21.60 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=10.0
Q ss_pred cccccccccCCCC
Q 002091 265 SFYCPITRDVMVD 277 (968)
Q Consensus 265 ~~~cpi~~~~m~d 277 (968)
...||+|.+.|--
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 4579999998843
No 267
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=21.30 E-value=16 Score=29.18 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=36.5
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhc-----ccccccccCcccCCCc
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRN-----TMITIASMKPKLVSTE 348 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~-----~~~~~~~~~~~l~~~~ 348 (968)
...+||+|...+ ++..+.=++++ +.-|.+|.... +...||..+..+...+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 357899999998 56667677777 89999998763 2457888777665443
No 268
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=21.28 E-value=28 Score=32.66 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCCCCCCCCcCC-CCCC-ccCHhH-HHHHHHHHhhcccccccccCcccCC
Q 002091 300 NNLCPLTMTVLD-TSIL-RPNKTL-RQSIEEWKDRNTMITIASMKPKLVS 346 (968)
Q Consensus 300 ~~~CP~t~~~l~-~~~l-~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~ 346 (968)
...||+|...+. +..+ .-++++ +.-|..|...+. ..||..+..+..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN-KECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC-CBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc-CCCCCCCCcCCC
Confidence 358999999984 4443 456776 999999998643 579988877643
No 269
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=20.63 E-value=30 Score=31.38 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=35.1
Q ss_pred CCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhhcccccccccCcccCC
Q 002091 300 NNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDRNTMITIASMKPKLVS 346 (968)
Q Consensus 300 ~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~~~~~~~~~~~~~l~~ 346 (968)
..+||+|...+ ++..+.=++++ +.-|..|...+ .+||..+.++.+
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK--IECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC--SBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcC--CcCCCCCCcCCC
Confidence 35899999998 55666667777 99999998765 469988877654
No 270
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=20.61 E-value=7.6e+02 Score=26.43 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=48.8
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHh
Q 002091 461 ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNL 530 (968)
Q Consensus 461 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 530 (968)
..+++.++.+-...+.++|.-.+..|...+..+ ..+ -..+++.|..+|+++++.+.+.+..+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IEL-LLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 356777777777778899999999887775321 111 145678888889888999999888888776
No 271
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.26 E-value=71 Score=23.33 Aligned_cols=40 Identities=13% Similarity=0.346 Sum_probs=28.4
Q ss_pred CCCCCCCCCCcC-CCCCCccCHhH-HHHHHHHHhh-ccccccc
Q 002091 299 GNNLCPLTMTVL-DTSILRPNKTL-RQSIEEWKDR-NTMITIA 338 (968)
Q Consensus 299 ~~~~CP~t~~~l-~~~~l~pn~~l-~~~I~~w~~~-~~~~~~~ 338 (968)
....||+|...+ ++..+.=++.+ +.-|.+|... .....||
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP 56 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCS
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCC
Confidence 356899999998 55566667777 8999999754 2234455
No 272
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.09 E-value=33 Score=27.91 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=13.1
Q ss_pred CCCCcccccccccCCCC
Q 002091 261 EPLQSFYCPITRDVMVD 277 (968)
Q Consensus 261 ~~~~~~~cpi~~~~m~d 277 (968)
..|+++.||+|+.--.+
T Consensus 56 dlPddW~CPvCga~K~~ 72 (81)
T 2kn9_A 56 DIPDDWSCPDCGAAKSD 72 (81)
T ss_dssp TSCTTCCCTTTCCCGGG
T ss_pred HCCCCCcCCCCCCCHHH
Confidence 46899999999874433
Done!