BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002093
(967 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 170/351 (48%), Gaps = 45/351 (12%)
Query: 388 KKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSASLAKL 447
K S WDV P + + + QA+ +V P T+ P+ G +++
Sbjct: 39 KPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAV---PVVGSTIT------ 89
Query: 448 NVSMDSVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI 507
R RRL V N+P +E+ +MEF N + G+ GS P + C I
Sbjct: 90 -------------RQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGS-PVLACQI 135
Query: 508 QREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVA----SGEAEKSVASV 563
+K AF+EF + ++ + A+ DG + G LKI+RP ++ + + + +V S
Sbjct: 136 NLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSS 195
Query: 564 DSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHF--EVNEDHEEPCAFIEY 621
+S +V DSPHKIFIGG+ L+ V E++ +FG L+A++ + + AF EY
Sbjct: 196 GVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEY 255
Query: 622 VDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN---------PPFHGIPKHAL 672
VD +T ++IAGLNG+++G + L +A + N+ N P +
Sbjct: 256 VDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSG- 314
Query: 673 PLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 723
PTEVL L N+ P+ E E E++LED++ EC ++G V+SV +
Sbjct: 315 ----PPTEVLCLLNMVTPDELR--DEEEYEDILEDIKEECTKYGVVRSVEI 359
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/359 (32%), Positives = 177/359 (49%), Gaps = 35/359 (9%)
Query: 380 SPINRSPEKKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGIS 439
SP + +K WDV P + + + QAA Q P +
Sbjct: 79 SPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAG----------------QIPATALL 122
Query: 440 VSASLAKLNVSMDSVQL--TQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVH 497
+ + L V+ V + +Q R RRL V N+P +E+A+M+F N + G+
Sbjct: 123 PTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAP 182
Query: 498 GSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVASGEAE 557
G+ P + I ++K AF+EF + ++ + A+ DG F G LKI+RP ++ +
Sbjct: 183 GN-PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSEN 241
Query: 558 KSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHF--EVNEDHEEP 615
SV VS +V DS HK+FIGG+ L+ V E++ +FGPLKA++ + +
Sbjct: 242 PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 301
Query: 616 CAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPP-----------F 664
AF EYVD VT +AIAGLNG+++G + L VQ G+ +PP
Sbjct: 302 YAFCEYVDINVTDQAIAGLNGMQLGDKKLL-VQRASVGAKNATLVSPPSTINQTPVTLQV 360
Query: 665 HGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 723
G+ + + PTEVL L N+ PE L + E EE++EDVR EC+++G VKS+ +
Sbjct: 361 PGLMSSQVQMGGHPTEVLCLMNMVLPE--ELLDDEEYEEIVEDVRDECSKYGLVKSIEI 417
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 174/358 (48%), Gaps = 33/358 (9%)
Query: 380 SPINRSPEKKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGIS 439
SP + +K WDV P + + + QAA Q P +
Sbjct: 79 SPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAG----------------QIPATALL 122
Query: 440 VSASLAKLNVSMDSVQL--TQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVH 497
+ + L V+ V + +Q R RRL V N+P +E+A+M+F N + G+
Sbjct: 123 PTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAP 182
Query: 498 GSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVASGEAE 557
G+ P + I ++K AF+EF + ++ + A+ DG F G LKI+RP ++ +
Sbjct: 183 GN-PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSEN 241
Query: 558 KSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHF--EVNEDHEEP 615
SV VS +V DS HK+FIGG+ L+ V E++ +FGPLKA++ + +
Sbjct: 242 PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 301
Query: 616 CAFIEYVDQLVTPKAIAGLNGLKVGGQVLT----------AVQAVLDGSIMDNSGNPPFH 665
AF EYVD VT +AIAGLNG+++G + L A L +I
Sbjct: 302 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVP 361
Query: 666 GIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 723
G+ + + PTEVL L N+ PE L + E EE++EDVR EC+++G VKS+ +
Sbjct: 362 GLMSSQVQMGGHPTEVLCLMNMVLPE--ELLDDEEYEEIVEDVRDECSKYGLVKSIEI 417
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 174/345 (50%), Gaps = 41/345 (11%)
Query: 384 RSPEKKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSAS 443
R P KK WDV P ++ + + QA+ + V S P+ G SV+
Sbjct: 122 REP-KKYRFWDVPPTGFENITPMEYKNMQASGAVPRGSVQS-------AVPVVGPSVTC- 172
Query: 444 LAKLNVSMDSVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCI 503
QS RRL V N+P +E+A+++F N + + G+ P +
Sbjct: 173 --------------QS----RRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGN-PIL 213
Query: 504 GCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVASGEAEKSVASV 563
C I +K AF+EF + ++ +A + DG +F G LK++RP+++ + + +
Sbjct: 214 LCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDY---QPSQNTFDMNAR 270
Query: 564 DSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYV 622
VS IV DS +KIFIGG+ L+ V E++C+FGPLKA+ V+ + + + AF EY+
Sbjct: 271 MPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYL 330
Query: 623 DQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNP----PFHGIPKHALPLLKKP 678
D +T +AIAGLNG+++G + L VQ N+ P GI +
Sbjct: 331 DPTLTDQAIAGLNGMQLGDKQLV-VQLACANQTRHNTHLPNSASAIAGIDLSQGA--GRA 387
Query: 679 TEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 723
TE+L L N+ + S+ + EE+LEDVR EC+++G V+S+ +
Sbjct: 388 TEILCLMNMVTEDELR--SDEDYEEILEDVREECSKYGIVRSLEI 430
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 166/361 (45%), Gaps = 54/361 (14%)
Query: 393 WDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSASLAKLNVSMD 452
+D+AP + +P + Q +N P PLA S L V
Sbjct: 177 FDMAPPTSAMLPGITAAAGQVPGTN-----PPIPGMFPNMFPLA----SGQFGALPVMPI 227
Query: 453 SVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG 512
Q+ R RR+ V LP A+E+++ F ++ + + G + I EK
Sbjct: 228 QAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKK 287
Query: 513 QAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF---VEVASGEAEK----SVASV-- 563
AFVE + E+AS A+ DG F G+ K++RP ++ + G ++ ++A+V
Sbjct: 288 FAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 347
Query: 564 --DSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCA 617
S G+ + P +IF+GG+ + + E++ +FGPL+ F++ +D E + A
Sbjct: 348 SPGSAGGL--EGPDRIFVGGLPYYFTEAQIRELLESFGPLRG--FDLVKDRETGNSKGYA 403
Query: 618 FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN----PPFHGIPKHALP 673
F Y D VT A A LNG+K+G + LT +A N G P + HA
Sbjct: 404 FCVYQDVSVTDIACAALNGIKMGDKTLTVRRA--------NQGTTQPKPEQESVLLHAQQ 455
Query: 674 ------LLKKP----TEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 723
L+ +P T+VL L V + + + + + +++LED+R EC +FGS+ VNV
Sbjct: 456 QIALQRLMLQPATLATKVLSLTEVISADELN--DDEDYQDILEDMRTECGKFGSL--VNV 511
Query: 724 V 724
V
Sbjct: 512 V 512
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 166/359 (46%), Gaps = 50/359 (13%)
Query: 393 WDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSASLAKLNVSMD 452
+D+AP T +P + Q +N + P + PLA S+ L +
Sbjct: 159 FDMAPPTTALLPGATDAAGQVPGTN-----PAIPGLFSNMFPLA----SSQFGALPMMPV 209
Query: 453 SVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG 512
Q+ R RR+ V LP +A+E+++ F ++ + + G + I EK
Sbjct: 210 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKK 269
Query: 513 QAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF---VEVASGEAEKS----VASVDS 565
AFVE + E+AS A+ DG F G +K++RP ++ + G ++ S +A+V S
Sbjct: 270 FAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGS 329
Query: 566 VSGIVK--DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFI 619
G + P +IF+GG+ + + E++ +FG L+ F++ +D E + AF
Sbjct: 330 TPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRG--FDLVKDRETGNSKGYAFC 387
Query: 620 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPT 679
Y D VT A A LNG+K+G + LT V+ G+ N P+ LL
Sbjct: 388 VYQDVSVTDIACAALNGIKMGDKTLT-VRRANQGTTQPN---------PEQESVLLHAQQ 437
Query: 680 EVLKLKNVFNPEGFSS----LSEL----------EVEEVLEDVRLECARFGSVKSVNVV 724
++ + + P ++ L+E+ + +++LED+R EC +FG++ VNVV
Sbjct: 438 QIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGAL--VNVV 494
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 39/293 (13%)
Query: 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVE 517
Q+ R RR+ V LP SA+E+++ + N + + G + I +K AFVE
Sbjct: 201 QATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 260
Query: 518 FLTAEDASAALCCDGCSFSGSILKIKRPKEF---VEVASGEAEKS----VASVDSVSGIV 570
+ E+AS A+ DG F G+ +K++RP ++ + A G ++ S +A+V G
Sbjct: 261 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSA 320
Query: 571 K--DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFIEYVDQ 624
+ P +IF+GG+ + V E++ +FGPL+ F++ +D E + AF Y D
Sbjct: 321 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRG--FDLVKDRETGNSKGYAFCVYQDL 378
Query: 625 LVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN----PPFHGI----------PKH 670
VT A A LNG+K+G + LT +A N G+ P I K
Sbjct: 379 NVTDIACAALNGIKMGDKTLTVRRA--------NQGSAQPRPEQENILLQAQQQVQLQKL 430
Query: 671 ALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 723
+ PT+V+ L V + + E E+++ED+RLE ++G++ V +
Sbjct: 431 VYQVGALPTKVVCLTQVVTADELK--DDEEYEDIMEDMRLEAGKYGNLVKVVI 481
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 144/306 (47%), Gaps = 37/306 (12%)
Query: 444 LAKLNVSMDSVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCI 503
L L V Q+ R RR+ V LP +A+E+++ F + + + G +
Sbjct: 235 LGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVV 294
Query: 504 GCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF---VEVASGEAEK-- 558
I EK AFVE + E+AS A+ DG G +K++RP ++ + G ++
Sbjct: 295 NVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNP 354
Query: 559 --SVASVDSVSGIVK--DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--H 612
++ +V SG + P +IF+GG+ + + E++ +FGPL+ ++ + + +
Sbjct: 355 NLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGN 414
Query: 613 EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHAL 672
+ AF Y D VT A A LNG+K+G + LT V+ + G+I P+
Sbjct: 415 SKGYAFCVYQDPSVTDIACAALNGIKMGDKTLT-VRRAIQGAIQPK---------PEQEE 464
Query: 673 PLLKKPTEVLKLKNVFNPEGFSS----LSEL----------EVEEVLEDVRLECARFGSV 718
LL ++ + +F P G + L+++ E E++ED+R E +FG++
Sbjct: 465 VLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNL 524
Query: 719 KSVNVV 724
VNVV
Sbjct: 525 --VNVV 528
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 145/313 (46%), Gaps = 39/313 (12%)
Query: 438 ISVSASLAKLNVSMDSVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVH 497
+ S L++ Q+ R RR+ V L +A+E+++ F + + + G
Sbjct: 213 LPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAG 272
Query: 498 GSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF---VEVASG 554
+ I EK AFVE + E+AS A+ DG F G+ +K++RP ++ + G
Sbjct: 273 PGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLG 332
Query: 555 EAEKS----VASVDSVSGIVK--DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEV 608
++ S +A+V G + P +IF+GG+ + V E++ +FG LK F++
Sbjct: 333 PSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKG--FDL 390
Query: 609 NEDHE----EPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPF 664
+D E + AF Y D VT A A LNG+K+G + LT V+ G+++
Sbjct: 391 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT-VRRANQGTMLQK------ 443
Query: 665 HGIPKHALPLLKKPTEVLKLKNVFNPEGFSS----LSEL----------EVEEVLEDVRL 710
P+ LL ++ + + P ++ L+++ E +++ED+R
Sbjct: 444 ---PEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQ 500
Query: 711 ECARFGSVKSVNV 723
E +FG++ +V +
Sbjct: 501 EGGKFGALTNVVI 513
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 142/291 (48%), Gaps = 35/291 (12%)
Query: 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVE 517
Q+ R RR+ V LP +A+E+++ + N + + G + I +K AFVE
Sbjct: 208 QATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 267
Query: 518 FLTAEDASAALCCDGCSFSGSILKIKRPKEF---VEVASGEAEKS----VASVDSVSGIV 570
+ E+AS A+ DG F G+ +K++RP ++ + A G ++ S +A+V G
Sbjct: 268 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSA 327
Query: 571 K--DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFIEYVDQ 624
+ P +IF+GG+ + V E++ +FGPL+ F++ +D E + AF Y D
Sbjct: 328 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRG--FDLVKDRETGNSKGYAFCVYQDL 385
Query: 625 LVTPKAIAGLNGLKVGGQVLTAVQAVLDG--------SIMDNSGNPPFHGIPKHALPLLK 676
VT A A LNG+K+G + LT +A SI+ + + + L
Sbjct: 386 NVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGAL- 444
Query: 677 KPTEVLKLKNVFNPEGFSSLSEL----EVEEVLEDVRLECARFGSVKSVNV 723
PT+V+ L V S EL E E+++ED+RLE ++G++ V +
Sbjct: 445 -PTKVVCLTQVV------SADELKDDEEYEDIMEDMRLEAGKYGNLIKVVI 488
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 15/205 (7%)
Query: 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVE 517
Q+ R RR+ V LP A+E+ + F N + + G + I +K AFVE
Sbjct: 266 QATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVE 325
Query: 518 FLTAEDASAALCCDGCSFSGSILKIKRPKEF---VEVASGEAEKS----VASVDSVSGIV 570
+ E+AS A+ DG F G+ +K++RP ++ A G ++ + +A+V G
Sbjct: 326 MRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAG 385
Query: 571 K--DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFIEYVDQ 624
+ P +IF+GG+ + V E++ FGPL+ F++ +D E + AF Y D
Sbjct: 386 GGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRG--FDIVKDKETGNSKGYAFCLYKDG 443
Query: 625 LVTPKAIAGLNGLKVGGQVLTAVQA 649
VT A A LNG+++G + LT +A
Sbjct: 444 TVTDIACAALNGIQLGDRTLTVRRA 468
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 29/289 (10%)
Query: 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVE 517
Q+ R RR+ V LP +A+E + + N + + G + I +K AFVE
Sbjct: 232 QATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVE 291
Query: 518 FLTAEDASAALCCDGCSFSGSILKIKRPKEF---VEVASGEAEK----SVASVDSVSGIV 570
+ E+AS A+ DG F G+ +K++RP ++ + A G ++ ++A+V G
Sbjct: 292 MRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSA 351
Query: 571 K--DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFIEYVDQ 624
+ P +IF+GG+ + V E++ +FGPL+ F++ +D E + AF Y D
Sbjct: 352 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRG--FDLVKDRETGNSKGYAFCVYQDL 409
Query: 625 LVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKK------- 677
VT A A LNG+K+G + LT +A S + + A ++K
Sbjct: 410 NVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQA--QMQKLMFQVGG 467
Query: 678 ---PTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 723
PT+V+ L V +P+ + E E++++D+R E R+G++ V +
Sbjct: 468 GALPTKVVCLTQVVSPDELR--DDEEYEDIVQDMREEGCRYGNLVKVVI 514
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 508 QREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVS 567
+R KG A+VEF+ A+ G G + V+ + E ++ A +++
Sbjct: 191 RRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPI-------IVQASQAEKNRAAAMANNLQ 243
Query: 568 GIVKDS--PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVD 623
K S P ++++G + ++ M+ I FG +++ ++ + + FI + D
Sbjct: 244 ---KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 300
Query: 624 QLVTPKAIAGLNGLKVGGQ 642
KA+ LNG ++ G+
Sbjct: 301 SECAKKALEQLNGFELAGR 319
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 508 QREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVS 567
+R KG A+VEF+ A+ G G + ++ + +AEK+ A+ +
Sbjct: 191 RRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ---------ASQAEKNRAAA-MAN 240
Query: 568 GIVKDS--PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVD 623
+ K S P ++++G + ++ M+ I FG +++ ++ + + FI + D
Sbjct: 241 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 300
Query: 624 QLVTPKAIAGLNGLKVGGQ 642
KA+ LNG ++ G+
Sbjct: 301 SECAKKALEQLNGFELAGR 319
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 508 QREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVS 567
+R KG A+VEF+ A+ G G + ++ + +AEK+ A+ +
Sbjct: 191 RRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ---------ASQAEKNRAAA-MAN 240
Query: 568 GIVKDS--PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVD 623
+ K S P ++++G + ++ M+ I FG +++ ++ + + FI + D
Sbjct: 241 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 300
Query: 624 QLVTPKAIAGLNGLKVGGQ 642
KA+ LNG ++ G+
Sbjct: 301 SECAKKALEQLNGFELAGR 319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,977,175
Number of Sequences: 539616
Number of extensions: 15781555
Number of successful extensions: 67585
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 1702
Number of HSP's that attempted gapping in prelim test: 51669
Number of HSP's gapped (non-prelim): 8546
length of query: 967
length of database: 191,569,459
effective HSP length: 127
effective length of query: 840
effective length of database: 123,038,227
effective search space: 103352110680
effective search space used: 103352110680
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)