Query 002093
Match_columns 967
No_of_seqs 565 out of 3263
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 16:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.8E-52 1E-56 494.5 42.6 310 457-768 169-500 (509)
2 KOG0147 Transcriptional coacti 100.0 1.8E-53 3.9E-58 474.6 14.6 332 585-967 190-536 (549)
3 KOG0120 Splicing factor U2AF, 100.0 1.1E-44 2.4E-49 411.0 26.5 325 386-726 112-444 (500)
4 TIGR01622 SF-CC1 splicing fact 100.0 3.9E-41 8.3E-46 395.7 36.2 290 461-769 87-447 (457)
5 TIGR01622 SF-CC1 splicing fact 100.0 7.2E-37 1.6E-41 359.6 25.3 347 574-966 89-455 (457)
6 TIGR01628 PABP-1234 polyadenyl 100.0 7E-36 1.5E-40 359.9 31.3 251 465-767 2-258 (562)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.4E-35 9.6E-40 332.7 29.6 269 463-769 3-348 (352)
8 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.2E-35 1.6E-39 347.1 30.5 296 573-963 174-506 (509)
9 TIGR01645 half-pint poly-U bin 100.0 2.5E-34 5.5E-39 338.0 29.7 178 458-650 102-282 (612)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.2E-33 1.6E-37 326.8 36.3 270 462-768 1-349 (481)
11 TIGR01645 half-pint poly-U bin 100.0 2.4E-33 5.2E-38 329.8 25.9 175 573-769 106-283 (612)
12 KOG0147 Transcriptional coacti 100.0 2.6E-33 5.6E-38 313.5 20.0 288 460-768 176-526 (549)
13 TIGR01628 PABP-1234 polyadenyl 100.0 2.2E-30 4.7E-35 312.3 25.7 270 463-769 88-363 (562)
14 KOG0145 RNA-binding protein EL 100.0 9.8E-30 2.1E-34 259.8 24.0 270 462-769 40-357 (360)
15 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-29 2.6E-34 298.4 25.1 239 463-769 58-306 (578)
16 KOG0117 Heterogeneous nuclear 100.0 1.7E-29 3.6E-34 275.6 21.8 241 461-768 81-329 (506)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-27 3.8E-32 281.2 31.1 278 464-767 97-477 (481)
18 KOG0124 Polypyrimidine tract-b 100.0 3.7E-28 8E-33 257.8 18.4 283 459-763 109-528 (544)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.3E-27 1.4E-31 265.9 27.5 164 573-769 2-168 (352)
20 KOG0123 Polyadenylate-binding 99.9 9.7E-27 2.1E-31 262.9 20.1 241 465-768 3-244 (369)
21 KOG0127 Nucleolar protein fibr 99.9 3.8E-26 8.2E-31 253.9 23.0 288 464-769 6-377 (678)
22 KOG0148 Apoptosis-promoting RN 99.9 1.1E-25 2.4E-30 232.2 17.8 233 460-769 3-237 (321)
23 KOG0124 Polypyrimidine tract-b 99.9 2.4E-26 5.2E-31 244.0 11.0 174 574-769 113-289 (544)
24 KOG0144 RNA-binding protein CU 99.9 5.9E-25 1.3E-29 239.0 20.0 168 460-652 31-206 (510)
25 TIGR01659 sex-lethal sex-letha 99.9 5.2E-24 1.1E-28 239.6 22.9 168 460-653 104-276 (346)
26 KOG0123 Polyadenylate-binding 99.9 5.2E-23 1.1E-27 232.7 18.5 273 460-768 73-347 (369)
27 TIGR01659 sex-lethal sex-letha 99.9 6.4E-22 1.4E-26 222.7 20.3 163 573-768 106-271 (346)
28 TIGR01648 hnRNP-R-Q heterogene 99.9 1.4E-21 2.9E-26 230.6 22.9 193 521-767 19-219 (578)
29 KOG0127 Nucleolar protein fibr 99.9 2.2E-21 4.7E-26 216.2 22.4 186 574-771 5-197 (678)
30 KOG0148 Apoptosis-promoting RN 99.9 4.9E-22 1.1E-26 205.4 13.5 175 463-651 62-237 (321)
31 KOG0110 RNA-binding protein (R 99.9 2.6E-21 5.5E-26 222.6 18.2 275 459-769 381-692 (725)
32 KOG0131 Splicing factor 3b, su 99.8 8.7E-21 1.9E-25 186.5 11.5 168 462-654 8-179 (203)
33 KOG0145 RNA-binding protein EL 99.8 9.1E-20 2E-24 187.1 19.3 169 571-772 38-209 (360)
34 KOG0120 Splicing factor U2AF, 99.8 5.8E-20 1.3E-24 209.9 18.7 188 459-652 285-492 (500)
35 KOG0117 Heterogeneous nuclear 99.8 1.3E-18 2.9E-23 190.8 15.0 170 460-654 161-333 (506)
36 KOG0144 RNA-binding protein CU 99.8 1.3E-18 2.8E-23 189.9 11.5 157 574-762 34-195 (510)
37 KOG0109 RNA-binding protein LA 99.7 7E-18 1.5E-22 176.4 10.4 145 465-651 4-149 (346)
38 KOG0109 RNA-binding protein LA 99.7 3.4E-17 7.5E-22 171.3 12.2 150 574-771 2-151 (346)
39 KOG1548 Transcription elongati 99.7 1E-15 2.2E-20 164.0 18.5 188 573-765 133-347 (382)
40 KOG0131 Splicing factor 3b, su 99.7 2.7E-16 5.8E-21 155.1 13.1 166 572-769 7-176 (203)
41 KOG0110 RNA-binding protein (R 99.6 5.2E-16 1.1E-20 179.3 12.1 174 464-652 516-693 (725)
42 KOG1190 Polypyrimidine tract-b 99.6 1.5E-14 3.2E-19 157.5 20.8 278 461-769 26-372 (492)
43 KOG4206 Spliceosomal protein s 99.6 1.9E-14 4.1E-19 147.6 15.0 177 461-649 7-219 (221)
44 KOG0105 Alternative splicing f 99.5 6.7E-14 1.5E-18 138.0 14.2 165 461-640 4-176 (241)
45 KOG4205 RNA-binding protein mu 99.5 1.9E-14 4E-19 158.2 8.4 173 462-655 5-179 (311)
46 KOG1190 Polypyrimidine tract-b 99.5 3.8E-12 8.2E-17 139.0 22.6 274 463-767 150-488 (492)
47 KOG0146 RNA-binding protein ET 99.5 8.7E-14 1.9E-18 143.9 8.9 78 574-651 285-364 (371)
48 KOG4211 Splicing factor hnRNP- 99.4 2.1E-12 4.6E-17 144.5 18.3 168 463-649 10-179 (510)
49 KOG0146 RNA-binding protein ET 99.4 7.9E-13 1.7E-17 137.0 12.4 77 573-649 18-98 (371)
50 KOG1548 Transcription elongati 99.4 4.2E-12 9E-17 136.6 16.4 185 461-649 132-349 (382)
51 KOG1456 Heterogeneous nuclear 99.4 2.8E-11 6.1E-16 130.7 21.8 262 463-769 31-362 (494)
52 KOG4212 RNA-binding protein hn 99.4 5.5E-12 1.2E-16 138.2 13.4 247 461-766 42-290 (608)
53 PLN03134 glycine-rich RNA-bind 99.4 4.1E-12 8.9E-17 126.3 11.2 82 573-654 33-116 (144)
54 KOG0106 Alternative splicing f 99.3 2.4E-12 5.3E-17 133.6 7.9 164 464-649 2-168 (216)
55 KOG4206 Spliceosomal protein s 99.3 4.6E-11 1E-15 123.0 16.1 169 574-759 9-210 (221)
56 KOG1457 RNA binding protein (c 99.3 2.2E-11 4.9E-16 123.7 13.3 169 460-639 31-273 (284)
57 PLN03134 glycine-rich RNA-bind 99.3 1.2E-11 2.6E-16 123.0 9.0 80 461-546 32-112 (144)
58 KOG1456 Heterogeneous nuclear 99.2 1.4E-09 3E-14 117.8 24.0 275 460-761 117-476 (494)
59 PF00076 RRM_1: RNA recognitio 99.2 2.9E-11 6.3E-16 103.9 7.5 69 577-645 1-70 (70)
60 KOG0105 Alternative splicing f 99.2 5.4E-10 1.2E-14 110.7 17.2 172 573-763 5-181 (241)
61 KOG4205 RNA-binding protein mu 99.2 5.3E-11 1.1E-15 131.1 10.7 168 573-769 5-175 (311)
62 KOG0106 Alternative splicing f 99.2 2.5E-11 5.5E-16 126.1 7.6 162 575-764 2-165 (216)
63 KOG0125 Ataxin 2-binding prote 99.2 4.3E-11 9.4E-16 127.9 8.9 82 571-652 93-174 (376)
64 PF00076 RRM_1: RNA recognitio 99.1 6.3E-11 1.4E-15 101.8 6.3 69 466-541 1-70 (70)
65 COG0724 RNA-binding proteins ( 99.1 3.4E-10 7.4E-15 121.6 12.3 140 463-608 115-259 (306)
66 PLN03120 nucleic acid binding 99.1 4.7E-10 1E-14 119.6 10.3 77 574-652 4-80 (260)
67 KOG0121 Nuclear cap-binding pr 99.1 2.3E-10 4.9E-15 107.3 6.8 85 459-549 32-117 (153)
68 PLN03120 nucleic acid binding 99.1 4.9E-10 1.1E-14 119.5 9.6 80 463-551 4-83 (260)
69 COG0724 RNA-binding proteins ( 99.1 2.1E-09 4.5E-14 115.5 14.6 166 574-751 115-286 (306)
70 KOG0107 Alternative splicing f 99.1 4.8E-10 1.1E-14 110.7 8.6 75 574-651 10-84 (195)
71 KOG0132 RNA polymerase II C-te 99.0 1.2E-09 2.7E-14 127.7 12.9 73 462-546 420-493 (894)
72 KOG1365 RNA-binding protein Fu 99.0 1.8E-09 4E-14 117.2 12.8 280 461-766 58-358 (508)
73 PLN03213 repressor of silencin 99.0 5.9E-10 1.3E-14 124.0 9.2 76 574-651 10-87 (759)
74 smart00362 RRM_2 RNA recogniti 99.0 1.3E-09 2.8E-14 92.7 8.8 71 576-646 1-71 (72)
75 PF14259 RRM_6: RNA recognitio 99.0 6.5E-10 1.4E-14 96.2 6.8 69 577-645 1-70 (70)
76 KOG0114 Predicted RNA-binding 99.0 1.2E-09 2.5E-14 99.0 8.1 82 571-653 15-96 (124)
77 KOG0122 Translation initiation 99.0 1.2E-09 2.7E-14 113.0 9.1 80 573-652 188-269 (270)
78 KOG0125 Ataxin 2-binding prote 99.0 1.4E-09 3E-14 116.6 9.8 81 459-547 92-173 (376)
79 KOG0121 Nuclear cap-binding pr 99.0 1E-09 2.2E-14 103.0 7.4 77 573-649 35-113 (153)
80 KOG0126 Predicted RNA-binding 99.0 3.5E-11 7.7E-16 119.0 -2.9 89 457-551 29-118 (219)
81 PF14259 RRM_6: RNA recognitio 99.0 6.3E-10 1.4E-14 96.2 4.8 69 466-541 1-70 (70)
82 PLN03121 nucleic acid binding 99.0 2.3E-09 5.1E-14 112.6 9.7 75 574-650 5-79 (243)
83 PLN03121 nucleic acid binding 98.9 2.5E-09 5.4E-14 112.4 9.7 80 463-551 5-84 (243)
84 KOG0107 Alternative splicing f 98.9 1.4E-09 3E-14 107.5 6.7 70 463-544 10-81 (195)
85 KOG4211 Splicing factor hnRNP- 98.9 2.2E-08 4.8E-13 112.8 15.9 170 572-766 8-178 (510)
86 KOG4207 Predicted splicing fac 98.9 1.9E-09 4.1E-14 108.8 6.8 79 573-651 12-92 (256)
87 KOG0126 Predicted RNA-binding 98.9 2.5E-10 5.3E-15 113.1 0.4 79 574-652 35-115 (219)
88 KOG0113 U1 small nuclear ribon 98.9 5.5E-09 1.2E-13 110.9 9.8 82 568-649 95-178 (335)
89 KOG1457 RNA binding protein (c 98.9 4.7E-08 1E-12 99.9 15.1 172 572-758 32-274 (284)
90 smart00361 RRM_1 RNA recogniti 98.9 6.8E-09 1.5E-13 90.3 7.7 62 703-764 4-69 (70)
91 PLN03213 repressor of silencin 98.9 3.4E-09 7.5E-14 118.0 7.0 75 462-546 9-86 (759)
92 smart00362 RRM_2 RNA recogniti 98.8 1.2E-08 2.6E-13 86.7 8.1 71 465-543 1-72 (72)
93 smart00360 RRM RNA recognition 98.8 1.4E-08 3E-13 85.9 8.0 68 579-646 1-70 (71)
94 KOG0130 RNA-binding protein RB 98.8 6.4E-09 1.4E-13 98.4 6.1 81 574-654 72-154 (170)
95 PF13893 RRM_5: RNA recognitio 98.8 1.3E-08 2.9E-13 84.3 7.4 56 708-767 1-56 (56)
96 PF13893 RRM_5: RNA recognitio 98.8 1.4E-08 3E-13 84.2 7.2 56 591-649 1-56 (56)
97 cd00590 RRM RRM (RNA recogniti 98.8 2.9E-08 6.4E-13 84.7 9.2 73 576-648 1-74 (74)
98 KOG0122 Translation initiation 98.8 1.1E-08 2.3E-13 106.1 7.1 78 462-545 188-266 (270)
99 KOG4212 RNA-binding protein hn 98.8 9.6E-08 2.1E-12 105.5 14.6 73 574-649 536-608 (608)
100 KOG0149 Predicted RNA-binding 98.8 7.9E-09 1.7E-13 106.9 5.7 77 461-543 10-86 (247)
101 KOG0149 Predicted RNA-binding 98.8 1.8E-08 3.9E-13 104.3 8.0 77 574-651 12-90 (247)
102 KOG0113 U1 small nuclear ribon 98.7 1.7E-08 3.6E-13 107.3 7.8 78 460-543 98-176 (335)
103 KOG0130 RNA-binding protein RB 98.7 1.1E-08 2.5E-13 96.8 5.3 75 464-544 73-148 (170)
104 KOG4207 Predicted splicing fac 98.7 2E-08 4.4E-13 101.5 6.5 78 462-545 12-90 (256)
105 smart00361 RRM_1 RNA recogniti 98.7 3.2E-08 6.9E-13 86.1 6.9 59 588-646 2-69 (70)
106 KOG0111 Cyclophilin-type pepti 98.7 1.9E-08 4.2E-13 102.2 5.9 83 573-655 9-93 (298)
107 KOG0108 mRNA cleavage and poly 98.7 2.5E-08 5.4E-13 114.8 6.8 80 464-549 19-99 (435)
108 KOG0108 mRNA cleavage and poly 98.7 3.7E-08 8E-13 113.3 8.1 79 575-653 19-99 (435)
109 smart00360 RRM RNA recognition 98.7 4.1E-08 8.9E-13 83.0 6.3 70 468-543 1-71 (71)
110 KOG0111 Cyclophilin-type pepti 98.7 1.6E-08 3.5E-13 102.8 4.4 79 460-544 7-86 (298)
111 KOG4454 RNA binding protein (R 98.6 3.6E-09 7.9E-14 107.7 -0.8 144 461-645 7-156 (267)
112 cd00590 RRM RRM (RNA recogniti 98.6 9E-08 2E-12 81.7 7.6 72 465-543 1-73 (74)
113 KOG0114 Predicted RNA-binding 98.6 8.2E-08 1.8E-12 87.3 7.4 71 463-545 18-92 (124)
114 KOG1365 RNA-binding protein Fu 98.6 6.5E-08 1.4E-12 105.4 6.8 184 465-651 163-361 (508)
115 KOG0129 Predicted RNA-binding 98.5 7.8E-07 1.7E-11 101.3 13.5 164 460-632 256-431 (520)
116 KOG0112 Large RNA-binding prot 98.4 1.8E-07 3.9E-12 111.8 5.1 161 459-652 368-531 (975)
117 KOG4307 RNA binding protein RB 98.4 3.7E-06 8.1E-11 97.8 15.2 182 461-649 309-511 (944)
118 KOG0226 RNA-binding proteins [ 98.4 7.5E-07 1.6E-11 93.1 8.4 133 503-649 132-267 (290)
119 KOG4676 Splicing factor, argin 98.3 1.9E-07 4.1E-12 102.3 2.4 174 465-644 9-218 (479)
120 KOG0128 RNA-binding protein SA 98.3 5.9E-08 1.3E-12 115.4 -2.2 149 461-651 665-814 (881)
121 KOG0128 RNA-binding protein SA 98.3 8E-08 1.7E-12 114.3 -2.4 239 462-766 570-811 (881)
122 KOG4454 RNA binding protein (R 98.3 4.6E-07 9.9E-12 92.6 2.8 153 572-766 7-159 (267)
123 KOG0415 Predicted peptidyl pro 98.2 1.5E-06 3.2E-11 94.2 6.2 80 571-650 236-317 (479)
124 KOG4210 Nuclear localization s 98.2 1.4E-06 3E-11 96.1 5.7 176 462-654 87-266 (285)
125 KOG0132 RNA polymerase II C-te 98.2 2.5E-06 5.5E-11 100.6 7.5 74 574-651 421-494 (894)
126 KOG2202 U2 snRNP splicing fact 98.2 8.5E-07 1.9E-11 93.3 2.6 50 913-962 102-151 (260)
127 KOG4208 Nucleolar RNA-binding 98.1 5.1E-06 1.1E-10 84.9 7.5 80 573-652 48-130 (214)
128 KOG1996 mRNA splicing factor [ 98.1 2.7E-06 5.9E-11 90.2 5.5 86 674-766 276-363 (378)
129 KOG4208 Nucleolar RNA-binding 98.1 3.6E-06 7.8E-11 86.0 5.4 76 463-543 49-125 (214)
130 KOG0112 Large RNA-binding prot 98.1 3E-06 6.4E-11 101.7 5.4 158 573-770 371-529 (975)
131 KOG1996 mRNA splicing factor [ 98.1 9.9E-07 2.2E-11 93.5 1.2 61 903-963 297-371 (378)
132 KOG0153 Predicted RNA-binding 98.1 1.5E-05 3.1E-10 87.0 10.0 75 573-651 227-302 (377)
133 KOG0153 Predicted RNA-binding 98.1 8.3E-06 1.8E-10 88.9 7.9 77 459-547 224-302 (377)
134 KOG4661 Hsp27-ERE-TATA-binding 98.1 1E-05 2.3E-10 92.0 8.7 83 461-549 403-486 (940)
135 KOG4307 RNA binding protein RB 98.0 6.6E-05 1.4E-09 87.8 14.4 178 578-769 315-513 (944)
136 KOG4660 Protein Mei2, essentia 98.0 1.2E-05 2.6E-10 92.6 8.3 173 460-651 72-249 (549)
137 KOG4661 Hsp27-ERE-TATA-binding 98.0 1E-05 2.2E-10 92.1 7.4 78 574-651 405-484 (940)
138 KOG0415 Predicted peptidyl pro 97.9 1.4E-05 3E-10 86.9 5.8 78 460-543 236-314 (479)
139 KOG4676 Splicing factor, argin 97.8 1.1E-05 2.3E-10 88.9 3.4 16 292-307 352-367 (479)
140 KOG0129 Predicted RNA-binding 97.8 0.00029 6.2E-09 80.9 13.8 160 573-751 258-432 (520)
141 KOG4660 Protein Mei2, essentia 97.8 1.6E-05 3.5E-10 91.6 3.5 70 573-645 74-143 (549)
142 KOG2193 IGF-II mRNA-binding pr 97.7 3.6E-06 7.8E-11 93.0 -2.3 151 464-649 2-154 (584)
143 PF15519 RBM39linker: linker b 97.7 9.6E-06 2.1E-10 70.9 0.8 20 859-878 51-70 (73)
144 KOG0116 RasGAP SH3 binding pro 97.7 0.00011 2.3E-09 84.7 9.2 76 462-543 287-362 (419)
145 KOG0151 Predicted splicing reg 97.7 5.9E-05 1.3E-09 88.5 7.0 77 573-649 173-254 (877)
146 KOG0533 RRM motif-containing p 97.7 7.3E-05 1.6E-09 80.0 7.1 76 461-543 81-157 (243)
147 KOG0151 Predicted splicing reg 97.7 9.2E-05 2E-09 87.0 7.6 84 460-546 171-255 (877)
148 KOG0533 RRM motif-containing p 97.6 0.00013 2.9E-09 78.1 8.2 79 573-651 82-161 (243)
149 KOG4210 Nuclear localization s 97.6 4.8E-05 1E-09 84.1 5.0 171 573-767 87-261 (285)
150 KOG2202 U2 snRNP splicing fact 97.6 4.5E-05 9.6E-10 80.6 3.3 69 699-767 76-145 (260)
151 PF04059 RRM_2: RNA recognitio 97.5 0.00047 1E-08 63.7 8.6 77 575-651 2-86 (97)
152 KOG4209 Splicing factor RNPS1, 97.5 8.6E-05 1.9E-09 79.5 4.1 81 458-544 96-176 (231)
153 KOG0226 RNA-binding proteins [ 97.5 0.00014 3.1E-09 76.4 5.2 77 461-543 188-265 (290)
154 KOG0116 RasGAP SH3 binding pro 97.4 0.00027 5.9E-09 81.4 7.6 77 574-651 288-366 (419)
155 PF04059 RRM_2: RNA recognitio 97.4 0.00032 6.9E-09 64.9 6.6 69 464-536 2-71 (97)
156 PF06495 Transformer: Fruit fl 97.3 0.00093 2E-08 66.6 8.3 18 388-405 114-131 (182)
157 KOG4209 Splicing factor RNPS1, 97.2 0.00036 7.8E-09 74.8 5.0 79 573-652 100-180 (231)
158 PF11608 Limkain-b1: Limkain b 97.2 0.0015 3.3E-08 58.0 7.8 69 465-544 4-73 (90)
159 KOG2193 IGF-II mRNA-binding pr 97.1 7.9E-05 1.7E-09 82.7 -1.6 152 575-769 2-156 (584)
160 KOG2314 Translation initiation 97.0 0.0014 3.1E-08 75.6 7.9 77 678-760 57-133 (698)
161 PF11608 Limkain-b1: Limkain b 96.7 0.0041 8.8E-08 55.4 6.3 69 575-651 3-76 (90)
162 KOG1995 Conserved Zn-finger pr 96.5 0.0035 7.6E-08 69.5 5.5 84 461-544 64-150 (351)
163 PF08777 RRM_3: RNA binding mo 96.3 0.0056 1.2E-07 57.7 4.9 57 575-635 2-58 (105)
164 COG5175 MOT2 Transcriptional r 96.1 0.011 2.4E-07 64.5 6.7 77 573-649 113-200 (480)
165 KOG4368 Predicted RNA binding 95.8 0.011 2.5E-07 68.5 5.3 8 182-189 549-556 (757)
166 KOG1995 Conserved Zn-finger pr 95.7 0.008 1.7E-07 66.7 3.5 80 573-652 65-154 (351)
167 KOG0115 RNA-binding protein p5 95.5 0.038 8.3E-07 58.8 7.4 96 626-761 6-101 (275)
168 KOG2314 Translation initiation 95.4 0.028 6E-07 65.4 6.5 74 574-647 58-139 (698)
169 PF08777 RRM_3: RNA binding mo 95.3 0.037 8.1E-07 52.2 6.2 68 464-543 2-75 (105)
170 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.063 1.4E-06 50.1 7.4 75 574-650 6-90 (100)
171 KOG4849 mRNA cleavage factor I 95.2 0.026 5.7E-07 61.9 5.3 78 462-543 79-157 (498)
172 PF14605 Nup35_RRM_2: Nup53/35 95.2 0.057 1.2E-06 44.4 6.0 52 464-528 2-53 (53)
173 KOG2253 U1 snRNP complex, subu 95.0 0.024 5.2E-07 67.3 4.7 67 462-543 39-106 (668)
174 PF14605 Nup35_RRM_2: Nup53/35 94.4 0.073 1.6E-06 43.8 4.7 52 575-631 2-53 (53)
175 PF05172 Nup35_RRM: Nup53/35/4 94.4 0.17 3.6E-06 47.3 7.7 78 463-541 6-84 (100)
176 KOG1847 mRNA splicing factor [ 94.4 0.049 1.1E-06 64.1 5.0 36 99-134 606-644 (878)
177 KOG3152 TBP-binding protein, a 94.1 0.016 3.4E-07 61.6 0.4 79 462-540 73-158 (278)
178 KOG1847 mRNA splicing factor [ 93.9 0.049 1.1E-06 64.1 3.8 9 286-294 780-788 (878)
179 KOG0115 RNA-binding protein p5 93.9 0.13 2.9E-06 54.9 6.6 85 524-635 7-93 (275)
180 KOG3152 TBP-binding protein, a 93.8 0.038 8.3E-07 58.8 2.6 70 574-643 74-157 (278)
181 COG5175 MOT2 Transcriptional r 93.8 0.095 2.1E-06 57.4 5.5 59 709-767 138-200 (480)
182 KOG1855 Predicted RNA-binding 93.4 0.071 1.5E-06 60.4 4.0 64 573-636 230-308 (484)
183 KOG3263 Nucleic acid binding p 93.2 0.048 1E-06 54.4 2.0 9 286-294 64-72 (196)
184 KOG2416 Acinus (induces apopto 92.9 0.082 1.8E-06 62.0 3.6 75 573-651 443-521 (718)
185 KOG4849 mRNA cleavage factor I 92.9 0.082 1.8E-06 58.2 3.4 75 575-649 81-159 (498)
186 PF08952 DUF1866: Domain of un 92.9 0.31 6.7E-06 48.4 7.0 56 590-652 52-107 (146)
187 KOG2416 Acinus (induces apopto 92.6 0.23 4.9E-06 58.5 6.6 73 460-543 441-517 (718)
188 KOG0670 U4/U6-associated splic 92.4 0.32 6.9E-06 57.0 7.3 11 591-601 520-530 (752)
189 KOG1855 Predicted RNA-binding 90.8 0.15 3.3E-06 57.9 2.6 83 461-543 229-319 (484)
190 PF08952 DUF1866: Domain of un 89.9 1.5 3.3E-05 43.6 8.3 60 702-769 47-106 (146)
191 PF08675 RNA_bind: RNA binding 89.5 1.1 2.5E-05 40.2 6.4 56 573-635 8-63 (87)
192 PF10309 DUF2414: Protein of u 89.0 1.4 3E-05 37.5 6.3 54 574-634 5-62 (62)
193 PF08648 DUF1777: Protein of u 88.7 0.68 1.5E-05 48.0 5.3 8 479-486 161-168 (180)
194 KOG2548 SWAP mRNA splicing reg 85.9 0.44 9.5E-06 55.4 2.1 19 469-487 555-573 (653)
195 PF07576 BRAP2: BRCA1-associat 85.6 3.1 6.8E-05 39.6 7.4 66 575-640 14-80 (110)
196 KOG0670 U4/U6-associated splic 85.5 3 6.4E-05 49.3 8.5 15 708-722 520-534 (752)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 85.5 0.35 7.7E-06 50.0 1.1 76 462-539 6-84 (176)
198 PF04847 Calcipressin: Calcipr 83.0 3.5 7.5E-05 43.0 7.1 61 588-652 9-71 (184)
199 KOG0804 Cytoplasmic Zn-finger 82.1 3.8 8.3E-05 47.3 7.5 68 574-641 74-142 (493)
200 PF15023 DUF4523: Protein of u 80.5 4.1 8.9E-05 40.2 6.0 70 574-649 86-159 (166)
201 PF07292 NID: Nmi/IFP 35 domai 79.5 1.9 4.2E-05 39.3 3.3 71 514-595 1-73 (88)
202 KOG4285 Mitotic phosphoprotein 78.2 13 0.00029 40.9 9.6 65 463-540 197-261 (350)
203 KOG2253 U1 snRNP complex, subu 77.9 1.9 4.2E-05 51.8 3.6 71 572-649 38-108 (668)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 77.6 1.8 3.9E-05 44.8 2.9 66 574-639 7-80 (176)
205 KOG2068 MOT2 transcription fac 77.4 0.81 1.7E-05 51.0 0.3 77 574-650 77-161 (327)
206 PF04847 Calcipressin: Calcipr 77.4 3.8 8.1E-05 42.7 5.1 60 703-767 7-68 (184)
207 KOG2068 MOT2 transcription fac 77.0 1.3 2.9E-05 49.3 1.8 56 709-764 98-157 (327)
208 KOG2591 c-Mpl binding protein, 76.7 3.5 7.6E-05 48.6 5.1 69 463-542 175-246 (684)
209 PF03880 DbpA: DbpA RNA bindin 76.6 8.4 0.00018 33.8 6.4 59 584-649 11-74 (74)
210 KOG4574 RNA-binding protein (c 75.1 2 4.4E-05 52.8 2.8 73 575-651 299-373 (1007)
211 PF07576 BRAP2: BRCA1-associat 73.4 12 0.00026 35.7 7.0 67 463-537 13-81 (110)
212 KOG0804 Cytoplasmic Zn-finger 73.0 11 0.00023 43.8 7.6 67 463-537 74-142 (493)
213 KOG4574 RNA-binding protein (c 72.9 8.7 0.00019 47.7 7.2 73 461-545 296-371 (1007)
214 KOG2591 c-Mpl binding protein, 72.4 8.6 0.00019 45.6 6.8 69 574-647 175-247 (684)
215 KOG3869 Uncharacterized conser 72.2 3.5 7.7E-05 47.1 3.6 12 56-67 58-69 (450)
216 PF15023 DUF4523: Protein of u 70.1 7 0.00015 38.7 4.6 43 707-755 106-148 (166)
217 KOG4285 Mitotic phosphoprotein 69.9 10 0.00023 41.8 6.3 69 575-649 198-267 (350)
218 PF08675 RNA_bind: RNA binding 67.9 11 0.00025 34.0 5.1 41 706-753 23-63 (87)
219 KOG2135 Proteins containing th 67.9 2.9 6.3E-05 48.5 1.8 72 461-544 370-442 (526)
220 PF10309 DUF2414: Protein of u 67.5 21 0.00045 30.5 6.4 56 463-529 5-60 (62)
221 PF11767 SET_assoc: Histone ly 66.7 18 0.00039 31.3 6.0 54 474-542 11-65 (66)
222 PF10567 Nab6_mRNP_bdg: RNA-re 65.4 62 0.0013 35.9 11.1 171 574-753 15-212 (309)
223 KOG1049 Polyadenylation factor 60.1 5.6 0.00012 47.2 2.2 7 70-76 175-181 (538)
224 PF02956 TT_ORF1: TT viral orf 58.6 7.6 0.00016 47.1 3.1 9 480-488 118-126 (525)
225 KOG2135 Proteins containing th 54.0 9.4 0.0002 44.5 2.7 62 587-653 386-447 (526)
226 PF11767 SET_assoc: Histone ly 51.5 32 0.00069 29.8 4.9 48 706-761 15-62 (66)
227 KOG2318 Uncharacterized conser 51.4 37 0.0008 40.8 7.0 80 674-764 169-300 (650)
228 KOG2146 Splicing coactivator S 50.5 1E+02 0.0023 34.0 9.6 11 43-53 17-27 (354)
229 KOG2891 Surface glycoprotein [ 48.4 5.2 0.00011 43.2 -0.4 55 706-760 176-250 (445)
230 PF15513 DUF4651: Domain of un 43.0 55 0.0012 28.0 4.9 25 702-726 5-29 (62)
231 PF14111 DUF4283: Domain of un 37.2 24 0.00053 34.9 2.5 84 510-607 54-138 (153)
232 KOG2318 Uncharacterized conser 36.6 1.2E+02 0.0025 36.8 8.0 77 461-539 172-297 (650)
233 KOG3580 Tight junction protein 34.4 69 0.0015 38.6 5.7 26 693-721 761-786 (1027)
234 KOG2146 Splicing coactivator S 34.1 4.5E+02 0.0097 29.3 11.2 7 66-72 49-55 (354)
235 KOG4410 5-formyltetrahydrofola 34.1 1.6E+02 0.0035 32.5 8.0 48 463-521 330-377 (396)
236 PF03880 DbpA: DbpA RNA bindin 33.4 87 0.0019 27.4 5.0 62 473-544 11-73 (74)
237 KOG4019 Calcineurin-mediated s 33.1 34 0.00073 35.3 2.6 75 574-652 10-90 (193)
238 KOG0334 RNA helicase [RNA proc 31.2 21 0.00045 45.8 0.9 15 925-939 955-969 (997)
239 KOG2891 Surface glycoprotein [ 30.1 42 0.00091 36.6 2.8 67 573-639 148-247 (445)
240 KOG1882 Transcriptional regula 29.9 43 0.00093 36.1 2.8 7 616-622 218-224 (293)
241 KOG4410 5-formyltetrahydrofola 28.9 1.2E+02 0.0025 33.5 5.9 48 574-625 330-378 (396)
242 KOG4213 RNA-binding protein La 27.9 1.1E+02 0.0024 31.6 5.3 44 705-750 123-168 (205)
243 KOG1924 RhoA GTPase effector D 27.6 1.3E+02 0.0028 37.7 6.6 15 18-32 64-78 (1102)
244 KOG1295 Nonsense-mediated deca 26.7 54 0.0012 37.7 3.1 71 463-537 7-79 (376)
245 PF03468 XS: XS domain; Inter 25.6 69 0.0015 30.9 3.2 40 587-627 30-69 (116)
246 KOG1882 Transcriptional regula 24.6 67 0.0015 34.6 3.1 11 533-543 195-205 (293)
247 PF15519 RBM39linker: linker b 23.7 46 0.001 29.4 1.5 18 676-693 51-68 (73)
248 PF00906 Hepatitis_core: Hepat 23.1 28 0.0006 35.2 0.0 7 286-292 169-175 (187)
249 KOG4483 Uncharacterized conser 21.4 1.9E+02 0.0042 33.4 6.0 59 460-530 388-446 (528)
250 KOG1902 Putative signal transd 20.9 84 0.0018 35.5 3.1 24 27-50 153-180 (441)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4.8e-52 Score=494.51 Aligned_cols=310 Identities=26% Similarity=0.389 Sum_probs=250.7
Q ss_pred ccCCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceee
Q 002093 457 TQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFS 536 (967)
Q Consensus 457 ~~~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~ 536 (967)
++.+...++|||||||+.+|+++|.+||+.|+...++.......+|..+.++.++|||||+|.++++|..||.|||+.|.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~ 248 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYS 248 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEee
Confidence 45678889999999999999999999999998877765544345788889999999999999999999999999999999
Q ss_pred cceeEEeCCCccccccccccccccccc---------CCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEe
Q 002093 537 GSILKIKRPKEFVEVASGEAEKSVASV---------DSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFE 607 (967)
Q Consensus 537 Gr~l~V~rp~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~ 607 (967)
|++|+|.++.+|.+.+........... ...........++|||+|||..+++++|+++|+.||.|..+.|+
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 999999999998744211111100000 00112234557899999999999999999999999999999998
Q ss_pred ecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCC---CCC----CCCCCCCCCCCCCC
Q 002093 608 VNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN---PPF----HGIPKHALPLLKKP 678 (967)
Q Consensus 608 ~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~---~~~----~~i~~~~~~~~~~p 678 (967)
.+. +.++|||||+|.+.++|..|+..|||..|+|+.|.|.++............ .++ ..+..........+
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKP 408 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCC
Confidence 874 457999999999999999999999999999999999998654432211111 111 11111112234568
Q ss_pred CeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC----CCCcceeEEEEeCCHHHHHHHHHHhCC
Q 002093 679 TEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG----DSNISTIQACEGNENTASAGVGQNLTN 754 (967)
Q Consensus 679 s~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~----~g~~~G~gFVeF~~~e~A~~Ai~~LnG 754 (967)
++||+|.||+++++| +++++|++|.+||+++|++||.|+.|.|+++. .+...|++||+|.+.++|++|+.+|||
T Consensus 409 s~v~~l~N~~~~~~l--~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 409 TKVVQLTNLVTGDDL--MDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred ceEEEeccCCchhHh--cCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 999999999999998 69999999999999999999999999999863 345678999999999999999999999
Q ss_pred CccCCCcceeEEee
Q 002093 755 DETNEKGERLEEVT 768 (967)
Q Consensus 755 ~~~~~r~~~v~~~~ 768 (967)
+.|+|+.+.+....
T Consensus 487 r~~~gr~v~~~~~~ 500 (509)
T TIGR01642 487 RKFNDRVVVAAFYG 500 (509)
T ss_pred CEECCeEEEEEEeC
Confidence 99999999886643
No 2
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=1.8e-53 Score=474.60 Aligned_cols=332 Identities=17% Similarity=0.209 Sum_probs=238.1
Q ss_pred ccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCC
Q 002093 585 TLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNP 662 (967)
Q Consensus 585 ~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~ 662 (967)
.++..+|.+||+.+|.|.+|+++.|.. .++|.|||+|.+.+++..|| +|.|+.+.|.+|.|+.....++.....+ .
T Consensus 190 r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~s-~ 267 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANAS-P 267 (549)
T ss_pred cCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhcc-c
Confidence 345678999999999999999999965 46999999999999999999 5999999999999999877666522211 1
Q ss_pred CCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CCCcceeEEEEeCC
Q 002093 663 PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNISTIQACEGNE 741 (967)
Q Consensus 663 ~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g~~~G~gFVeF~~ 741 (967)
.+ +.... ..|-.-|++.|++... ++ ++++.+|++||.|+.|.++++. +|.++|||||+|.+
T Consensus 268 a~-~~k~~-----~~p~~rl~vgnLHfNi-----te-------~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 268 AL-QGKGF-----TGPMRRLYVGNLHFNI-----TE-------DMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred cc-ccccc-----ccchhhhhhcccccCc-----hH-------HHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 11 11111 1222228899987632 22 4789999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHhCCCccCCCcceeEEeecccccccchhhhhcchhhhhhhccccccCCCCCCCCCCCCCCcccccccchhh
Q 002093 742 NTASAGVGQNLTNDETNEKGERLEEVTDHKSIKNNELEILNDSKEVMEAGEVNNVKDNRPASGTMGDEPSQLCELDTDMA 821 (967)
Q Consensus 742 ~e~A~~Ai~~LnG~~~~~r~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~LM~~~~~~~~~~~~~~a 821 (967)
.++|++|+.+|||++|+|++|+|..++++..+...+. ..++.++......+....+..+||++.++. ..+..+.+
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~----~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~-~~~~~~s~ 404 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAV----TQFDFDEDDRQGLSLGSGGRNQLMAKLAEG-KGRSLPST 404 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeeecccccccc----cccccchhhccccccccccHHHHHHHHhcc-CCccccch
Confidence 9999999999999999999999999998663332211 111222221111122234456888883322 22222221
Q ss_pred hhhh----cccCcccccccCCccccccCCCCCCCCCCccccccccccccccCCCcchhcccccccCCCCccccccccccc
Q 002093 822 VEYQ----ARDSTSEIVSQGVPTQVNTLKDSPCAHDDKVTCNIQLEHMSEENKSSAKEDLNLEEVNGNSEAFTGASNEMG 897 (967)
Q Consensus 822 ~~~~----~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~c~~~~n~f~~~~e~~~~~~~~~~~~~~~~~~~~~ 897 (967)
.+.+ +..........+.. +....+.++ .+.-+|+++||+|+|||||.+|+. +.|+
T Consensus 405 ~~~~l~~~~~~~~~~~~~~~~~---~~~~~p~~~---~p~~~i~t~C~lL~nMFdpstete-~n~d-------------- 463 (549)
T KOG0147|consen 405 AISALLLLAKLASAAQFNGVVR---VRSVDPADA---SPAFDIPTQCLLLSNMFDPSTETE-PNWD-------------- 463 (549)
T ss_pred hhhHHHhccccchHHhhcCCcC---ccccCcccc---ccccCCccHHHHHhhcCCcccccC-cchh--------------
Confidence 1111 01111110000000 111111111 334449999999999999999888 4444
Q ss_pred cccccccCCCCCCCCCCC----Cccc----ccceEEEEecCHHHHHHHHHHhhccccCCceEEEEecChhhHHhhcCC
Q 002093 898 MQSSAVENGDNENQDPNQ----GHIF----EPGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRARFSK 967 (967)
Q Consensus 898 ~~e~~~e~~~~~~~e~~~----~~v~----~~G~VyVkF~s~eaA~~A~~aLhGR~FagR~I~A~yv~~~~Y~~~Fp~ 967 (967)
.||.+||++||.+ .||| +.|||||+|+++++|.+|+++||||||+||||+|.|||+..||.+||.
T Consensus 464 -----~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~ 536 (549)
T KOG0147|consen 464 -----QEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPD 536 (549)
T ss_pred -----hHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCC
Confidence 8899999999986 7777 469999999999999999999999999999999999999999999995
No 3
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=411.00 Aligned_cols=325 Identities=33% Similarity=0.505 Sum_probs=256.3
Q ss_pred ccccCCCCCCCCCcCCCCCccccccccccccCCCcCCCCCCCCccccCCCcccccchhhccccCcccccccccCCCCCCE
Q 002093 386 PEKKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSASLAKLNVSMDSVQLTQSNRPMRR 465 (967)
Q Consensus 386 ~~R~~~~~d~~P~~~~sv~~a~q~s~q~~~s~l~p~p~~~P~~~a~~~p~~g~~~~~~~~~~~~~~~s~~~~~~~~~~r~ 465 (967)
..|....|+++|++++.+++...... ..+...++.|.......-.+ . ......+...++.+...++
T Consensus 112 ~~r~~~~~~~~~~~fe~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~t~q~~r 177 (500)
T KOG0120|consen 112 YSRKRSLWDVPPEGFETITPDGAKLY-----KNFNATGQVPGDLSNPKKSL-K--------LPQLPTPPMDSQATRQARR 177 (500)
T ss_pred cccchhhhcCCCCCCcccCchhhhhh-----hhccccCCCCCCcccccccc-c--------cccCCCCccCcchhhhhhh
Confidence 34556789999999998777221111 11222222222211110000 0 0001112233456778899
Q ss_pred EEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEEeCC
Q 002093 466 LCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRP 545 (967)
Q Consensus 466 LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V~rp 545 (967)
+||+++|+.++++.+..+|+.-....|+.....+..++.+.+...++|||++|.+.++|..|+.+++..|.|+++++.++
T Consensus 178 ~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~ 257 (500)
T KOG0120|consen 178 LYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRP 257 (500)
T ss_pred hcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCCceeccc
Confidence 99999999999999999999988888887666556899999999999999999999999999999999999999999999
Q ss_pred Cccccccccccccc---ccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEe
Q 002093 546 KEFVEVASGEAEKS---VASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIE 620 (967)
Q Consensus 546 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVe 620 (967)
.+|.+.+....... ..........+++.++.+||++||..+++.++++++..||.+..+.++.+.. .++||||.+
T Consensus 258 ~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~e 337 (500)
T KOG0120|consen 258 HDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCE 337 (500)
T ss_pred ccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeee
Confidence 99987643332211 1223334456678899999999999999999999999999999999999865 579999999
Q ss_pred ecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCC---CCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCC
Q 002093 621 YVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN---PPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLS 697 (967)
Q Consensus 621 F~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~---~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~ 697 (967)
|.++..+..|++.|||..++++.|+|+.|.++........+ .++++|+....+..+.|+.||+|+||+++++| .+
T Consensus 338 y~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deL--kd 415 (500)
T KOG0120|consen 338 YCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDEL--KD 415 (500)
T ss_pred eeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHh--cc
Confidence 99999999999999999999999999999887665433322 35777877777888999999999999999999 59
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEEecC
Q 002093 698 ELEVEEVLEDVRLECARFGSVKSVNVVKY 726 (967)
Q Consensus 698 ~~~~eei~eDIr~~f~kFG~V~~V~I~r~ 726 (967)
+++|++|+|||+.+|.+||.|.+|.|+++
T Consensus 416 d~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 416 DEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 99999999999999999999999999985
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.9e-41 Score=395.75 Aligned_cols=290 Identities=22% Similarity=0.282 Sum_probs=225.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||..+|+++|+++|+.||.+.. | ..+.+..++.++|||||+|.+.++|.+||.|+|..|.|++|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~---v---~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i 160 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRD---V---QCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPI 160 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeE---E---EEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeee
Confidence 45679999999999999999999999996433 2 24466678899999999999999999999999999999999
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAF 618 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aF 618 (967)
.|........... ........ ......+|||+|||..+++++|+++|++||.|..|.|+.+.. .++||||
T Consensus 161 ~v~~~~~~~~~~~-------~~~~~~~~-~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~af 232 (457)
T TIGR01622 161 IVQSSQAEKNRAA-------KAATHQPG-DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGF 232 (457)
T ss_pred EEeecchhhhhhh-------hcccccCC-CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEE
Confidence 9984321110000 00000000 012268999999999999999999999999999999998854 4699999
Q ss_pred EeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcC---------------CC-----------------C--CCCCC
Q 002093 619 IEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIM---------------DN-----------------S--GNPPF 664 (967)
Q Consensus 619 VeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~---------------~~-----------------~--~~~~~ 664 (967)
|+|.+.++|.+|+..|||..|.|+.|.|.++....... .. . +...+
T Consensus 233 V~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (457)
T TIGR01622 233 IQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLI 312 (457)
T ss_pred EEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccC
Confidence 99999999999999999999999999999964211000 00 0 00000
Q ss_pred CC--------------------CC---------CCC----CCC--CCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHH
Q 002093 665 HG--------------------IP---------KHA----LPL--LKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVR 709 (967)
Q Consensus 665 ~~--------------------i~---------~~~----~~~--~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr 709 (967)
++ ++ ... .+. ...+++||+|.||+++.++ .++.++.+|++||+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~--~~~~~~~~~~~dv~ 390 (457)
T TIGR01622 313 PGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATE--EEPNFDNEILDDVK 390 (457)
T ss_pred CCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCccc--ccchHHHHHHHHHH
Confidence 00 00 000 000 2357899999999999887 58899999999999
Q ss_pred HHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 710 LECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 710 ~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
++|++||.|+.|.|+.+ ...|++||+|.+.++|.+|++.|||+.|+|+.+.+.....
T Consensus 391 ~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 391 EECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99999999999999854 2458999999999999999999999999999998877643
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=7.2e-37 Score=359.59 Aligned_cols=347 Identities=11% Similarity=0.145 Sum_probs=226.4
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
..+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||. |+|..|.|++|.|.++..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecch
Confidence 57899999999999999999999999999999998853 469999999999999999996 999999999999988754
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CCC
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSN 730 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g~ 730 (967)
.......... ..+ .....+..|+|.||... +++ ++|+++|++||.|+.|.|+++. +|.
T Consensus 168 ~~~~~~~~~~----~~~-----~~~p~~~~l~v~nl~~~-----~te-------~~l~~~f~~~G~i~~v~~~~d~~~g~ 226 (457)
T TIGR01622 168 EKNRAAKAAT----HQP-----GDIPNFLKLYVGNLHFN-----ITE-------QELRQIFEPFGDIEDVQLHRDPETGR 226 (457)
T ss_pred hhhhhhhccc----ccC-----CCCCCCCEEEEcCCCCC-----CCH-------HHHHHHHHhcCCeEEEEEEEcCCCCc
Confidence 4332111000 000 00123688999999642 233 5789999999999999999875 568
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeecccccccchhhhhcchhhhhhhccccccCCCCCCCCCCCCCC
Q 002093 731 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHKSIKNNELEILNDSKEVMEAGEVNNVKDNRPASGTMGDEP 810 (967)
Q Consensus 731 ~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~LM~~~~ 810 (967)
++|||||+|.+.++|.+|+..|||..|.|+.+.|....+......... .... .+................||++..
T Consensus 227 ~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 302 (457)
T TIGR01622 227 SKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAAN-TFED---IDKQQQMGKNLNTEEREQLMEKLD 302 (457)
T ss_pred cceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchh-hhcc---ccccccCCcCCCccchHHHHHhhc
Confidence 999999999999999999999999999999999988765331111100 0000 000000000001111112222210
Q ss_pred ccc--ccccchhhhhhh---cccCcccccccCCcc---ccccCCCCCCCCCCccccccccccccccCCCcchhccccccc
Q 002093 811 SQL--CELDTDMAVEYQ---ARDSTSEIVSQGVPT---QVNTLKDSPCAHDDKVTCNIQLEHMSEENKSSAKEDLNLEEV 882 (967)
Q Consensus 811 ~~~--~~~~~~~a~~~~---~~~~~~~~~~q~~~~---~~~~~~~~~~~~~~~~~~~i~~~c~~~~n~f~~~~e~~~~~~ 882 (967)
... +.+..+.+.... ........+....+. ...................+.+.|+++.|||++.++.. +.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~-~~~ 381 (457)
T TIGR01622 303 RDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEE-PNF 381 (457)
T ss_pred cCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCccccc-chH
Confidence 000 000000000000 000000000000000 00000000000000011236789999999999976544 111
Q ss_pred CCCCccccccccccccccccccCCCCCCCCCCC-Cccc--------ccceEEEEecCHHHHHHHHHHhhccccCCceEEE
Q 002093 883 NGNSEAFTGASNEMGMQSSAVENGDNENQDPNQ-GHIF--------EPGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAV 953 (967)
Q Consensus 883 ~~~~~~~~~~~~~~~~~e~~~e~~~~~~~e~~~-~~v~--------~~G~VyVkF~s~eaA~~A~~aLhGR~FagR~I~A 953 (967)
..|+.+|+.+||.+ |.|. ..|+|||+|.++++|++|+++||||||+||.|+|
T Consensus 382 -------------------~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~ 442 (457)
T TIGR01622 382 -------------------DNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITA 442 (457)
T ss_pred -------------------HHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEE
Confidence 25667778888887 4443 3699999999999999999999999999999999
Q ss_pred EecChhhHHhhcC
Q 002093 954 EYIPLNLYRARFS 966 (967)
Q Consensus 954 ~yv~~~~Y~~~Fp 966 (967)
.|++++.|..+||
T Consensus 443 ~~~~~~~~~~~~~ 455 (457)
T TIGR01622 443 AFVVNDVYDMSCL 455 (457)
T ss_pred EEEcHHHHHhhcC
Confidence 9999999999997
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7e-36 Score=359.90 Aligned_cols=251 Identities=18% Similarity=0.257 Sum_probs=206.5
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEe
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~ 543 (967)
+|||||||+++||++|.++|+.||.+..| ..+.+..+++++|||||+|.+.++|.+||. ||+..|.|++|+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v------~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSV------RVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 69999999999999999999999964332 234566678999999999999999999999 99999999999998
Q ss_pred CCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeec
Q 002093 544 RPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYV 622 (967)
Q Consensus 544 rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~ 622 (967)
+...- . ........+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.
T Consensus 76 ~s~~~---------~---------~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~ 137 (562)
T TIGR01628 76 WSQRD---------P---------SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFE 137 (562)
T ss_pred ccccc---------c---------cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEEC
Confidence 52110 0 0011234679999999999999999999999999999998875 457999999999
Q ss_pred CcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHH
Q 002093 623 DQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVE 702 (967)
Q Consensus 623 ~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~e 702 (967)
+.++|.+|+..|||..+.|+.|.|....+...... ......+.|+|.|+.... ++
T Consensus 138 ~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~----------------~~~~~~~~l~V~nl~~~~-----te---- 192 (562)
T TIGR01628 138 KEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREA----------------APLKKFTNLYVKNLDPSV-----NE---- 192 (562)
T ss_pred CHHHHHHHHHHhcccEecCceEEEecccccccccc----------------ccccCCCeEEEeCCCCcC-----CH----
Confidence 99999999999999999999999976543322110 011234568889985422 22
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC----CCcceeEEe
Q 002093 703 EVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN----EKGERLEEV 767 (967)
Q Consensus 703 ei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~----~r~~~v~~~ 767 (967)
++|+++|++||.|.+|.|.++..|..+|||||+|.+.++|.+|++.|||..|. ++.+.+...
T Consensus 193 ---e~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 193 ---DKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred ---HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecc
Confidence 57899999999999999999988999999999999999999999999999999 776666543
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.4e-35 Score=332.73 Aligned_cols=269 Identities=15% Similarity=0.175 Sum_probs=210.9
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
..+|||+|||+.+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|++|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~------i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~ 76 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCK------LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIK 76 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEE------EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEE
Confidence 46899999999999999999999999644432 34556678999999999999999999999 999999999999
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEE
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFI 619 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFV 619 (967)
|.+..... ......+|||+|||..+++++|+++|++||.|..+.++.+. +.++|||||
T Consensus 77 v~~a~~~~--------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 136 (352)
T TIGR01661 77 VSYARPSS--------------------DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFI 136 (352)
T ss_pred EEeecccc--------------------cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEE
Confidence 97421100 01124689999999999999999999999999999998874 457999999
Q ss_pred eecCcchHHHHHHHhCCCccCC--eEEEEEEcccCCCcCC---------------CCCCCC----------C--------
Q 002093 620 EYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVLDGSIMD---------------NSGNPP----------F-------- 664 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~~G--r~I~V~~a~~~~~~~~---------------~~~~~~----------~-------- 664 (967)
+|.+.++|..|++.|||..+.| ..|.|.++........ ...... .
T Consensus 137 ~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (352)
T TIGR01661 137 RFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFR 216 (352)
T ss_pred EECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccc
Confidence 9999999999999999999877 6788888743221000 000000 0
Q ss_pred ---------------------------CCCC-----------CCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHH
Q 002093 665 ---------------------------HGIP-----------KHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLE 706 (967)
Q Consensus 665 ---------------------------~~i~-----------~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~e 706 (967)
...+ ....+.......+|+|.||.... ++ +
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~-----~e-------~ 284 (352)
T TIGR01661 217 PSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDT-----DE-------T 284 (352)
T ss_pred cCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCC-----CH-------H
Confidence 0000 00000011234479999997532 22 5
Q ss_pred HHHHHHhcCCCeEEEEEecCC-CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 707 DVRLECARFGSVKSVNVVKYG-DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 707 DIr~~f~kFG~V~~V~I~r~~-~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
+|+++|++||.|++|.|+++. +|.++|||||+|.+.++|.+||..|||..|+|+.|+|...+.
T Consensus 285 ~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 285 VLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred HHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 799999999999999999986 899999999999999999999999999999999999988764
No 8
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.2e-35 Score=347.15 Aligned_cols=296 Identities=15% Similarity=0.210 Sum_probs=197.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhc------------CCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAF------------GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG 640 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~------------G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~ 640 (967)
...+|||+|||..+|+++|+++|..| +.|..+.+.. .+|||||+|.+.++|..||+ |+|+.|.
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----EKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----CCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 35789999999999999999999985 2344444432 58999999999999999995 9999999
Q ss_pred CeEEEEEEcccCCCcCCCC-----CC--CCCCCCC-CCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 002093 641 GQVLTAVQAVLDGSIMDNS-----GN--PPFHGIP-KHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLEC 712 (967)
Q Consensus 641 Gr~I~V~~a~~~~~~~~~~-----~~--~~~~~i~-~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f 712 (967)
|+.|.|............. .. ....... .............|+|.||.... ++ ++|+++|
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-----~~-------~~l~~~f 316 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYL-----GE-------DQIKELL 316 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCC-----CH-------HHHHHHH
Confidence 9999997653322111000 00 0000000 00001112345789999996532 33 5789999
Q ss_pred hcCCCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeecccccccchhhhhcchhhhhhhc
Q 002093 713 ARFGSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHKSIKNNELEILNDSKEVMEAG 791 (967)
Q Consensus 713 ~kFG~V~~V~I~r~-~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~ 791 (967)
+.||.|+.|.|+++ .+|..+|||||+|.+.++|..|++.|||..|.|+.+.|..+..........
T Consensus 317 ~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~-------------- 382 (509)
T TIGR01642 317 ESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATID-------------- 382 (509)
T ss_pred HhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcc--------------
Confidence 99999999999987 478899999999999999999999999999999999887765321000000
Q ss_pred cccccCCCCCCCCCCCCCCcccccccchhhhhhhcccCcccccccCCccccccCCCCCCCCCCccccccccccccccCCC
Q 002093 792 EVNNVKDNRPASGTMGDEPSQLCELDTDMAVEYQARDSTSEIVSQGVPTQVNTLKDSPCAHDDKVTCNIQLEHMSEENKS 871 (967)
Q Consensus 792 ~~~~~~~~~~~~~LM~~~~~~~~~~~~~~a~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~c~~~~n~f 871 (967)
... .......++.. ..+... . ...+++.|+++.|||
T Consensus 383 -~~~--~~~~~~~~~~~-------------------------~~~~~~------------~----~~~~~s~v~~l~N~~ 418 (509)
T TIGR01642 383 -TSN--GMAPVTLLAKA-------------------------LSQSIL------------Q----IGGKPTKVVQLTNLV 418 (509)
T ss_pred -ccc--ccccccccccc-------------------------chhhhc------------c----ccCCCceEEEeccCC
Confidence 000 00000000000 000000 0 011456788888997
Q ss_pred cchhcccccccCCCCccccccccccccccccccCCCCCCCCCCC-Cccc---------------ccceEEEEecCHHHHH
Q 002093 872 SAKEDLNLEEVNGNSEAFTGASNEMGMQSSAVENGDNENQDPNQ-GHIF---------------EPGCVFVEYMRAEASC 935 (967)
Q Consensus 872 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~e~~~-~~v~---------------~~G~VyVkF~s~eaA~ 935 (967)
.+..... .+.+.++.+++.++|.+ |.|. ..|+|||+|.++++|.
T Consensus 419 ~~~~l~~--------------------d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~ 478 (509)
T TIGR01642 419 TGDDLMD--------------------DEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAE 478 (509)
T ss_pred chhHhcC--------------------cchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHH
Confidence 6543222 01123344455555554 2221 2489999999999999
Q ss_pred HHHHHhhccccCCceEEEEecChhhHHh
Q 002093 936 MAAHSLHRRLFDDRIVAVEYIPLNLYRA 963 (967)
Q Consensus 936 ~A~~aLhGR~FagR~I~A~yv~~~~Y~~ 963 (967)
+|+++||||||+||+|.|.|++.+.|+.
T Consensus 479 ~A~~~lnGr~~~gr~v~~~~~~~~~~~~ 506 (509)
T TIGR01642 479 KAMEGMNGRKFNDRVVVAAFYGEDCYKA 506 (509)
T ss_pred HHHHHcCCCEECCeEEEEEEeCHHHhhc
Confidence 9999999999999999999999999975
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.5e-34 Score=337.96 Aligned_cols=178 Identities=24% Similarity=0.326 Sum_probs=147.8
Q ss_pred cCCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 458 ~~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
++....++|||||||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.
T Consensus 102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV------~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSI------NMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEE------EEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 344567899999999999999999999999964433 234566789999999999999999999999 9999999
Q ss_pred cceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCC
Q 002093 537 GSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEE 614 (967)
Q Consensus 537 Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~sk 614 (967)
|+.|+|.++..+...... .... ........+|||+|||..+++++|+++|+.||.|..++|.++.. .++
T Consensus 176 GR~IkV~rp~~~p~a~~~--------~~~~-~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksK 246 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQPI--------IDMV-QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK 246 (612)
T ss_pred cceeeecccccccccccc--------cccc-cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcC
Confidence 999999976554321100 0000 00112347899999999999999999999999999999998854 469
Q ss_pred CEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 615 PCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 615 G~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 247 GfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 247 GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred CeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 999999999999999999999999999999998875
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.2e-33 Score=326.81 Aligned_cols=270 Identities=18% Similarity=0.135 Sum_probs=200.8
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH---ccCceeecc
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC---CDGCSFSGS 538 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~---lng~~l~Gr 538 (967)
++++|||+|||+.+|+++|+++|++||. |..+.+-.++|||||+|.+.++|..|+. +++..|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~------------V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~ 68 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGP------------VSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQ 68 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCC------------eeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCe
Confidence 4679999999999999999999999994 4455555678999999999999999998 478999999
Q ss_pred eeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEE
Q 002093 539 ILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAF 618 (967)
Q Consensus 539 ~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aF 618 (967)
+|.|.+.......... + .. .....+....+|||+||+..+|+++|+++|++||.|..|.|.++. ..|+||
T Consensus 69 ~l~v~~s~~~~~~~~~----~---~~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~--~~~~af 138 (481)
T TIGR01649 69 PAFFNYSTSQEIKRDG----N---SD-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN--NVFQAL 138 (481)
T ss_pred EEEEEecCCcccccCC----C---Cc-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC--CceEEE
Confidence 9999854321100000 0 00 000111223579999999999999999999999999999987764 357999
Q ss_pred EeecCcchHHHHHHHhCCCccCC--eEEEEEEcccCCCcC-----C--------CCC-------------CCCC------
Q 002093 619 IEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVLDGSIM-----D--------NSG-------------NPPF------ 664 (967)
Q Consensus 619 VeF~~~e~A~~Al~~LnG~~~~G--r~I~V~~a~~~~~~~-----~--------~~~-------------~~~~------ 664 (967)
|+|.+.++|.+|++.|||..|.| +.|+|.++.+..... . ..+ ...+
T Consensus 139 Vef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (481)
T TIGR01649 139 VEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPS 218 (481)
T ss_pred EEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCc
Confidence 99999999999999999999854 588888876532100 0 000 0000
Q ss_pred ------C--------------CCC------C--------CC--------CCCCCCCCeEEEccccCCCCCCCCCChHHHH
Q 002093 665 ------H--------------GIP------K--------HA--------LPLLKKPTEVLKLKNVFNPEGFSSLSELEVE 702 (967)
Q Consensus 665 ------~--------------~i~------~--------~~--------~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~e 702 (967)
+ .++ . .. .+....++.+|+|.||... . +++
T Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~-~---vt~---- 290 (481)
T TIGR01649 219 SYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQE-K---VNC---- 290 (481)
T ss_pred cCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCC-C---CCH----
Confidence 0 000 0 00 0111346789999998631 1 122
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 703 EVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 703 ei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
++|+++|+.||.|..|+|+++. +|||||+|.+.++|..|+..|||..|.|+.+.|..+.
T Consensus 291 ---~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 291 ---DRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred ---HHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 5799999999999999999863 5899999999999999999999999999999997754
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.4e-33 Score=329.77 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=143.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++|||+|||..+++++|+++|.+||.|..|.|+.|. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 35789999999999999999999999999999999884 4579999999999999999999999999999999998653
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CC
Q 002093 651 LDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DS 729 (967)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g 729 (967)
........ ...+ .........|+|.||... +++ ++|+++|++||.|++|.|+++. .|
T Consensus 186 ~~p~a~~~-----~~~~-----~~~~~~~~rLfVgnLp~~-----vte-------edLk~lFs~FG~I~svrl~~D~~tg 243 (612)
T TIGR01645 186 NMPQAQPI-----IDMV-----QEEAKKFNRIYVASVHPD-----LSE-------TDIKSVFEAFGEIVKCQLARAPTGR 243 (612)
T ss_pred cccccccc-----cccc-----cccccccceEEeecCCCC-----CCH-------HHHHHHHhhcCCeeEEEEEecCCCC
Confidence 22111000 0000 001123467999998642 233 5799999999999999999885 56
Q ss_pred CcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 730 NISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 730 ~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
..+|||||+|.+.++|.+|+..|||.+|+|+.++|...+.
T Consensus 244 ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 244 GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 7899999999999999999999999999999999988774
No 12
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=2.6e-33 Score=313.50 Aligned_cols=288 Identities=21% Similarity=0.266 Sum_probs=226.3
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
++..++||+--|+..+++.+|.+||+.+|++..+ ..|.+...++++|.|||+|.+.+....|+.|.|..+.|.+
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdV------riI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDV------RIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCccee------EeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 4667788888888899999999999999974443 2557788899999999999999999999999999999999
Q ss_pred eEEeCCCcccccccccccccccccC---CcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec--CCCCC
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVD---SVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEE 614 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d--~~~sk 614 (967)
|.|+ .+..+++..+.. ........+...|||+||.+++++++|+.+|++||.|..|.+.+| ++.++
T Consensus 250 v~vq---------~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~sk 320 (549)
T KOG0147|consen 250 VIVQ---------LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSK 320 (549)
T ss_pred eEec---------ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccccccc
Confidence 9998 333344332111 110011112233999999999999999999999999999999998 56789
Q ss_pred CEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcC-------------------CCCCC-------CC-----
Q 002093 615 PCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIM-------------------DNSGN-------PP----- 663 (967)
Q Consensus 615 G~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~-------------------~~~~~-------~~----- 663 (967)
||+||+|.+.++|.+|+..|||+.|.|+.|+|....-..... +..+- .+
T Consensus 321 gfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~ 400 (549)
T KOG0147|consen 321 GFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS 400 (549)
T ss_pred CcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc
Confidence 999999999999999999999999999999987542110000 00000 00
Q ss_pred --------------------CC-------CCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCC
Q 002093 664 --------------------FH-------GIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFG 716 (967)
Q Consensus 664 --------------------~~-------~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG 716 (967)
+. ..|..+.|....|+.|+.|.|||+|.+.. .+.|..+|.|||.++|.+||
T Consensus 401 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstet--e~n~d~eI~edV~Eec~k~g 478 (549)
T KOG0147|consen 401 LPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTET--EPNWDQEIREDVIEECGKHG 478 (549)
T ss_pred ccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCccccc--CcchhhHHHHHHHHHHHhcC
Confidence 00 01111122223789999999999999884 78899999999999999999
Q ss_pred CeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 717 SVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 717 ~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
.|..|.|.++.. |+.||.|.+.+.|..|+.+|||++|+|+.|......
T Consensus 479 ~v~hi~vd~ns~----g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 479 KVCHIFVDKNSA----GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred CeeEEEEccCCC----ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 999999988643 788999999999999999999999999999876654
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2.2e-30 Score=312.32 Aligned_cols=270 Identities=17% Similarity=0.181 Sum_probs=212.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
..+|||+|||.++|+++|+++|+.||.+..+ .|.....+.++|||||+|.+.++|..|++ |||..+.|+.|.
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~-------~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSC-------KVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCccee-------EeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 3579999999999999999999999964443 22333467899999999999999999999 999999999999
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEe
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIE 620 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVe 620 (967)
|......... . .......++|||+|||..+|+++|+++|+.||.|..+.+..+. +.++|||||+
T Consensus 161 v~~~~~~~~~-----~----------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~ 225 (562)
T TIGR01628 161 VGRFIKKHER-----E----------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVN 225 (562)
T ss_pred Eecccccccc-----c----------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEE
Confidence 9742211110 0 0112335789999999999999999999999999999998874 4569999999
Q ss_pred ecCcchHHHHHHHhCCCccC----CeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCC
Q 002093 621 YVDQLVTPKAIAGLNGLKVG----GQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSL 696 (967)
Q Consensus 621 F~~~e~A~~Al~~LnG~~~~----Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i 696 (967)
|.+.++|.+|++.|+|..|. |+.|.|.++........... ..+..... ..........|+|.|+....
T Consensus 226 F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~-~~~~~~~~--~~~~~~~~~~l~V~nl~~~~----- 297 (562)
T TIGR01628 226 FEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELR-RKFEELQQ--ERKMKAQGVNLYVKNLDDTV----- 297 (562)
T ss_pred ECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHH-hhHHhhhh--hhhcccCCCEEEEeCCCCcc-----
Confidence 99999999999999999999 99999988754332110000 00000000 00012235668999986522
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 697 SELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 697 ~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
++ ++|+++|++||.|.+|+|+.+..|.++|||||+|.+.++|.+|+..|||..|+|+.+.|..+..
T Consensus 298 ~~-------~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 298 TD-------EKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred CH-------HHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 33 5799999999999999999998999999999999999999999999999999999999987654
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=9.8e-30 Score=259.82 Aligned_cols=270 Identities=17% Similarity=0.216 Sum_probs=211.6
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
....|.|.-||.++|+++|+.+|...|+ |+...+|.+..+|.+.||+||.|.++++|++|+. |||..|..+.|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGe------iEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGE------IESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccc------eeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 3456999999999999999999988774 4445577888999999999999999999999999 99999999999
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAF 618 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aF 618 (967)
+|..+. + . . .......|||++||..+|..+|..+|++||.|.--+|+.|. +.++|.+|
T Consensus 114 KVSyAR----P-S---------s------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgF 173 (360)
T KOG0145|consen 114 KVSYAR----P-S---------S------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGF 173 (360)
T ss_pred EEEecc----C-C---------h------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeE
Confidence 998421 1 0 0 01234689999999999999999999999999887777774 45799999
Q ss_pred EeecCcchHHHHHHHhCCCccCCe--EEEEEEcccCC-CcCC-------------CCCCCC-------------------
Q 002093 619 IEYVDQLVTPKAIAGLNGLKVGGQ--VLTAVQAVLDG-SIMD-------------NSGNPP------------------- 663 (967)
Q Consensus 619 VeF~~~e~A~~Al~~LnG~~~~Gr--~I~V~~a~~~~-~~~~-------------~~~~~~------------------- 663 (967)
|.|....+|..||..|||..-.|. +|+|++|.... .... ..+...
T Consensus 174 iRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~ 253 (360)
T KOG0145|consen 174 IRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQA 253 (360)
T ss_pred EEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhc
Confidence 999999999999999999987654 69999884221 1100 000000
Q ss_pred -CC--------CCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-CCcce
Q 002093 664 -FH--------GIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD-SNIST 733 (967)
Q Consensus 664 -~~--------~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~-g~~~G 733 (967)
+. ++.....+.......||++.|+-...+. . -|.++|.+||.|.+|+|++|.+ ..++|
T Consensus 254 rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de---------~---~LWQlFgpFGAv~nVKvirD~ttnkCKG 321 (360)
T KOG0145|consen 254 RFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADE---------S---ILWQLFGPFGAVTNVKVIRDFTTNKCKG 321 (360)
T ss_pred cCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchH---------h---HHHHHhCcccceeeEEEEecCCcccccc
Confidence 00 0000011222344689999998653332 2 2688999999999999999964 88999
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 734 IQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 734 ~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
||||...+.++|..||..|||..++++.+.|...+.
T Consensus 322 fgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 322 FGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 999999999999999999999999999998876543
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1.2e-29 Score=298.41 Aligned_cols=239 Identities=16% Similarity=0.223 Sum_probs=193.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee-ccee
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS-GSIL 540 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~-Gr~l 540 (967)
.++|||+|||.+++|++|+++|+.||.+..+ .++++ .++.++|||||+|.+.++|..||+ ||+..|. |+.|
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~v------rl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYEL------RLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEE------EEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 4799999999999999999999999974443 13355 779999999999999999999999 9998885 7777
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCC-eeEEEEee---cCCCCCCE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGP-LKAYHFEV---NEDHEEPC 616 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~-V~~v~l~~---d~~~skG~ 616 (967)
.|.. ....++|||+|||..+++++|.++|++++. +..+.+.. +...++||
T Consensus 131 ~V~~--------------------------S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGF 184 (578)
T TIGR01648 131 GVCI--------------------------SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGF 184 (578)
T ss_pred cccc--------------------------cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCce
Confidence 6652 112578999999999999999999999863 44443332 23356999
Q ss_pred EEEeecCcchHHHHHHHhCC--CccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCC
Q 002093 617 AFIEYVDQLVTPKAIAGLNG--LKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFS 694 (967)
Q Consensus 617 aFVeF~~~e~A~~Al~~LnG--~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~ 694 (967)
|||+|.+.++|..|+..|+. ..+.|+.|.|.++.+...... ......++|+|.||....
T Consensus 185 AFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~----------------~~~~~~k~LfVgNL~~~~--- 245 (578)
T TIGR01648 185 AFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE----------------DVMAKVKILYVRNLMTTT--- 245 (578)
T ss_pred EEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc----------------cccccccEEEEeCCCCCC---
Confidence 99999999999999988864 467899999999976542110 001235789999986532
Q ss_pred CCChHHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 695 SLSELEVEEVLEDVRLECARF--GSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 695 ~i~~~~~eei~eDIr~~f~kF--G~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
++ ++|+++|++| |.|+.|.+++ +||||+|.+.++|++|++.|||.+|.|+.+.|..+..
T Consensus 246 --te-------e~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 246 --TE-------EIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred --CH-------HHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 33 5789999999 9999998875 5899999999999999999999999999999987743
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=275.58 Aligned_cols=241 Identities=17% Similarity=0.208 Sum_probs=202.0
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee-ecc
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF-SGS 538 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l-~Gr 538 (967)
...+.||||.||-++.|++|.-||+..|++..+. ++++...|.++|||||.|.+.++|..|+. ||+..| .|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR------LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR------LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEE------EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 3457899999999999999999999999866543 56788899999999999999999999999 999887 688
Q ss_pred eeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCC-eeEEEEeec---CCCCC
Q 002093 539 ILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGP-LKAYHFEVN---EDHEE 614 (967)
Q Consensus 539 ~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~-V~~v~l~~d---~~~sk 614 (967)
.|.|.- ....++|||||||.+.++++|.+.|++.+. |.+|.|... +..++
T Consensus 155 ~igvc~--------------------------Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNR 208 (506)
T KOG0117|consen 155 LLGVCV--------------------------SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNR 208 (506)
T ss_pred EeEEEE--------------------------eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcccccccc
Confidence 888861 224789999999999999999999999874 677777654 34579
Q ss_pred CEEEEeecCcchHHHHHHHh-CC-CccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCC
Q 002093 615 PCAFIEYVDQLVTPKAIAGL-NG-LKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEG 692 (967)
Q Consensus 615 G~aFVeF~~~e~A~~Al~~L-nG-~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~ 692 (967)
|||||+|.+...|..|...| +| +.+.|..|.|.||.|....-.. .-...+||+|.||...
T Consensus 209 GFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded----------------~ms~VKvLYVRNL~~~-- 270 (506)
T KOG0117|consen 209 GFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED----------------TMSKVKVLYVRNLMES-- 270 (506)
T ss_pred ceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh----------------hhhheeeeeeeccchh--
Confidence 99999999999999888777 44 6789999999999876432111 1134689999998642
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 693 FSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 693 L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
.+.|.|+.+|..||.|+.|+.++| ||||.|.+.++|.+||+.|||.+|.|.++-+..+.
T Consensus 271 ----------tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 271 ----------TTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred ----------hhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 223568999999999999999975 89999999999999999999999999999886653
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.7e-27 Score=281.17 Aligned_cols=278 Identities=19% Similarity=0.258 Sum_probs=196.2
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec--cee
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG--SIL 540 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G--r~l 540 (967)
.+|||+||++.+|+++|.++|+.||.+..+ .+......++|||+|.+.++|.+|++ |||..|.| +.|
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v----------~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l 166 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRI----------VTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTL 166 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEE----------EEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEE
Confidence 479999999999999999999999953332 11122334799999999999999999 99999865 466
Q ss_pred EEeCCC--------------ccccccc-cccccc-------ccc------------------------------cC----
Q 002093 541 KIKRPK--------------EFVEVAS-GEAEKS-------VAS------------------------------VD---- 564 (967)
Q Consensus 541 ~V~rp~--------------~~~~~~~-~~~~~~-------~~~------------------------------~~---- 564 (967)
+|.+.+ +|..+.. +..... ... .+
T Consensus 167 ~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR01649 167 KIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHG 246 (481)
T ss_pred EEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCccc
Confidence 665432 1111100 000000 000 00
Q ss_pred ------------C----c---CCcccCCCceEEEcCCCc-ccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCc
Q 002093 565 ------------S----V---SGIVKDSPHKIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQ 624 (967)
Q Consensus 565 ------------~----~---~~~~~~~~~~L~V~nLp~-~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~ 624 (967)
. . .........+|||+||+. .+|+++|+++|+.||.|..|.|+.+ .+|||||+|.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~~~ 323 (481)
T TIGR01649 247 PPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMADP 323 (481)
T ss_pred CCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEECCH
Confidence 0 0 000012346999999997 6999999999999999999999887 579999999999
Q ss_pred chHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCC-----CCC---CCCCC-------CCC-CCCCCCCCCeEEEccccC
Q 002093 625 LVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNS-----GNP---PFHGI-------PKH-ALPLLKKPTEVLKLKNVF 688 (967)
Q Consensus 625 e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~-----~~~---~~~~i-------~~~-~~~~~~~ps~vl~L~Nl~ 688 (967)
++|..|+..|||..|.|+.|.|.++.......... +.. .+.+. +.. .......|+.+|+|.||.
T Consensus 324 ~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp 403 (481)
T TIGR01649 324 YQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIP 403 (481)
T ss_pred HHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCC
Confidence 99999999999999999999999875432111000 000 00000 000 000123578899999996
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhcCCC--eEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCc-----
Q 002093 689 NPEGFSSLSELEVEEVLEDVRLECARFGS--VKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKG----- 761 (967)
Q Consensus 689 ~~~~L~~i~~~~~eei~eDIr~~f~kFG~--V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~----- 761 (967)
. .+ ++ ++|+++|+.||. |..|+|.....+ .+++|||+|.+.++|.+|+..|||..|.++.
T Consensus 404 ~--~~---te-------e~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~ 470 (481)
T TIGR01649 404 L--SV---SE-------EDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPY 470 (481)
T ss_pred C--CC---CH-------HHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccc
Confidence 4 22 33 578999999998 888988654444 4789999999999999999999999999996
Q ss_pred -ceeEEe
Q 002093 762 -ERLEEV 767 (967)
Q Consensus 762 -~~v~~~ 767 (967)
++|..+
T Consensus 471 ~lkv~fs 477 (481)
T TIGR01649 471 HLKVSFS 477 (481)
T ss_pred eEEEEec
Confidence 666544
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.7e-28 Score=257.76 Aligned_cols=283 Identities=22% Similarity=0.296 Sum_probs=216.9
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
+-.-.++||||.|.+.+.|+.|+..|.+||++..|+. -.+..|+++||||||+|.-+|.|..|++ |||..++|
T Consensus 109 ALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM------SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 109 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINM------SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred HHHHhHheeeeeeEEEechHHHHhhccCCCCcceeec------ccccccccccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 3455789999999999999999999999998665432 3677889999999999999999999999 99999999
Q ss_pred ceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCC
Q 002093 538 SILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEP 615 (967)
Q Consensus 538 r~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG 615 (967)
+.|+|++|.+....++.... -.......++|||..+.+.++++||+..|+.||.|..|.+.+++. ..+|
T Consensus 183 RNiKVgrPsNmpQAQpiID~---------vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkG 253 (544)
T KOG0124|consen 183 RNIKVGRPSNMPQAQPIIDM---------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKG 253 (544)
T ss_pred ccccccCCCCCcccchHHHH---------HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccc
Confidence 99999988764322111000 001122458999999999999999999999999999999998853 4599
Q ss_pred EEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCc----------C--------------------------CCC
Q 002093 616 CAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI----------M--------------------------DNS 659 (967)
Q Consensus 616 ~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~----------~--------------------------~~~ 659 (967)
|+||+|.+..+...|+..||=+.++|+-|+|..+...+.. + ...
T Consensus 254 yGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~ 333 (544)
T KOG0124|consen 254 YGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTV 333 (544)
T ss_pred eeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCccccc
Confidence 9999999999999999999999999999999764211000 0 000
Q ss_pred CC---------------------------------CC-CCCCCCC-----------CC-------------------C--
Q 002093 660 GN---------------------------------PP-FHGIPKH-----------AL-------------------P-- 673 (967)
Q Consensus 660 ~~---------------------------------~~-~~~i~~~-----------~~-------------------~-- 673 (967)
+. .+ .+.+|.. +. +
T Consensus 334 G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl 413 (544)
T KOG0124|consen 334 GAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKL 413 (544)
T ss_pred CCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccc
Confidence 00 00 0001000 00 0
Q ss_pred ---------------------------CCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC
Q 002093 674 ---------------------------LLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY 726 (967)
Q Consensus 674 ---------------------------~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~ 726 (967)
.-...++|++|.||++|.++ ++ .+..+|.++|.+||.|..|.|...
T Consensus 414 ~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~Di---De----~LegEi~EECgKfG~V~rViI~ne 486 (544)
T KOG0124|consen 414 ERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDI---DE----DLEGEITEECGKFGAVNRVIIYNE 486 (544)
T ss_pred cCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhh---hh----HHHHHHHHHHhcccceeEEEEEec
Confidence 01345789999999999886 33 456789999999999999999876
Q ss_pred CCCC-----cceeEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 002093 727 GDSN-----ISTIQACEGNENTASAGVGQNLTNDETNEKGER 763 (967)
Q Consensus 727 ~~g~-----~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~ 763 (967)
..+. +--..||+|....++.+|.++|+|+.|+|+..+
T Consensus 487 kq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 487 KQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred ccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 4332 223579999999999999999999999999765
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=6.3e-27 Score=265.94 Aligned_cols=164 Identities=11% Similarity=0.176 Sum_probs=140.1
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
+..+|||+|||..+++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999885 4578999999999999999999999999999999999986
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CC
Q 002093 651 LDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DS 729 (967)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g 729 (967)
+.... .....|+|.|+.... ++ ++|+.+|++||.|..+.|+.+. .+
T Consensus 82 ~~~~~---------------------~~~~~l~v~~l~~~~-----~~-------~~l~~~f~~~G~i~~~~~~~~~~~~ 128 (352)
T TIGR01661 82 PSSDS---------------------IKGANLYVSGLPKTM-----TQ-------HELESIFSPFGQIITSRILSDNVTG 128 (352)
T ss_pred ccccc---------------------cccceEEECCccccC-----CH-------HHHHHHHhccCCEEEEEEEecCCCC
Confidence 53211 123468888886532 22 5789999999999999999874 67
Q ss_pred CcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 730 NISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 730 ~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
..+|||||+|.+.++|+.|++.|||..+.+....+.....
T Consensus 129 ~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 129 LSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred CcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 7899999999999999999999999999987665555444
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.7e-27 Score=262.90 Aligned_cols=241 Identities=18% Similarity=0.238 Sum_probs=195.7
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEe
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~ 543 (967)
.|||| +.+||.+|.++|+++|.+..+ ..|.+. + +-|||||.|.++++|.+||. ||...+.|++|+|.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~------rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSI------RVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeE------EEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 59999 999999999999999974443 355666 5 99999999999999999999 99999999999998
Q ss_pred CCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecC
Q 002093 544 RPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVD 623 (967)
Q Consensus 544 rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~ 623 (967)
|.. ..+..|||.||++.++...|.++|+.||.|.+|+|..+.+.++|| ||+|.+
T Consensus 71 ~s~-------------------------rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~ 124 (369)
T KOG0123|consen 71 WSQ-------------------------RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFES 124 (369)
T ss_pred hhc-------------------------cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCC
Confidence 411 112229999999999999999999999999999999998889999 999999
Q ss_pred cchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHH
Q 002093 624 QLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEE 703 (967)
Q Consensus 624 ~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~ee 703 (967)
.+.|.+|+..|||..+.|+.|.|.......-....... .. ..-+. +++.|.. .+ +++
T Consensus 125 e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~-----------~~~t~-v~vk~~~--~~---~~~----- 181 (369)
T KOG0123|consen 125 EESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK-----------KRFTN-VYVKNLE--ED---STD----- 181 (369)
T ss_pred HHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh-----------hhhhh-hheeccc--cc---cch-----
Confidence 99999999999999999999999877554332211111 00 01111 2222222 11 122
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 704 VLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 704 i~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
+.|...|..||.|.++.|+++..|...||+||+|.+.++|..|+..|||..+.+..+-|....
T Consensus 182 --~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 182 --EELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQ 244 (369)
T ss_pred --HHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccc
Confidence 357889999999999999999999899999999999999999999999999998877775543
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.8e-26 Score=253.86 Aligned_cols=288 Identities=17% Similarity=0.184 Sum_probs=210.0
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
.||||++||++++.++|.++|+.+|++.... .|.+...+.++|||||.|.-.+++..|+. +++..|.|+.|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~------vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAV------VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeE------EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 5999999999999999999999999654421 22344556789999999999999999999 9999999999998
Q ss_pred eCCCcccccccccccccccccCCcCC------cccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC-CCC
Q 002093 543 KRPKEFVEVASGEAEKSVASVDSVSG------IVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH-EEP 615 (967)
Q Consensus 543 ~rp~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~-skG 615 (967)
..+....-+.......+.+....+.+ -+..+.-+|.|.|||+.+...+|+.+|+.||.|..|.|++..++ -.|
T Consensus 80 ~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcG 159 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCG 159 (678)
T ss_pred ccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccc
Confidence 74332221110000000010011111 11223568999999999999999999999999999999876543 269
Q ss_pred EEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCC-------------------------------------
Q 002093 616 CAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDN------------------------------------- 658 (967)
Q Consensus 616 ~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~------------------------------------- 658 (967)
||||+|....+|.+||+.+||..|+|++|-|-||.+.......
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 9999999999999999999999999999999998653221100
Q ss_pred ------CCCCC--------------CCCC--CCCCC----------CCCCCCCeEEEccccCCCCCCCCCChHHHHHHHH
Q 002093 659 ------SGNPP--------------FHGI--PKHAL----------PLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLE 706 (967)
Q Consensus 659 ------~~~~~--------------~~~i--~~~~~----------~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~e 706 (967)
.++.- +... +.... .....-..+|+|.||.+- ...|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD------------~tEE 307 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFD------------TTEE 307 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCcc------------ccHH
Confidence 00000 0000 00000 001112368888888652 2336
Q ss_pred HHHHHHhcCCCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHh-----CC-CccCCCcceeEEeec
Q 002093 707 DVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNL-----TN-DETNEKGERLEEVTD 769 (967)
Q Consensus 707 DIr~~f~kFG~V~~V~I~r~-~~g~~~G~gFVeF~~~e~A~~Ai~~L-----nG-~~~~~r~~~v~~~~~ 769 (967)
.|.+.|.+||.|+.+.|+.+ .+|.++|.|||.|.+..+|.+||.+. .| ..|.|+.++|..++-
T Consensus 308 el~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 308 ELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 78999999999999999987 48999999999999999999999988 23 778888888877654
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.1e-25 Score=232.24 Aligned_cols=233 Identities=18% Similarity=0.231 Sum_probs=174.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
+..++|||||||...+||+-|..||++.|. |..+.+- |. .
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~------------v~~~k~i---------~~-------------------e 42 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGS------------VTKTKVI---------FD-------------------E 42 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccc------------cccceee---------hh-------------------h
Confidence 356789999999999999999999999883 3333321 11 3
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEE
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCA 617 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~a 617 (967)
|+|.++..- +. .+......-.-+||+.|...++-++|++.|.+||.|.+++|++|.. .+|||+
T Consensus 43 ~~v~wa~~p-----~n----------Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYg 107 (321)
T KOG0148|consen 43 LKVNWATAP-----GN----------QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYG 107 (321)
T ss_pred hccccccCc-----cc----------CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCccccee
Confidence 455532211 00 0000011134699999999999999999999999999999999965 579999
Q ss_pred EEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCC
Q 002093 618 FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLS 697 (967)
Q Consensus 618 FVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~ 697 (967)
||.|.+.++|++||..|||+||++|.|+-.||.-.+..+. .....+..+ ...+....+.+++.|+.. - |+
T Consensus 108 FVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n-~~~ltfdeV----~NQssp~NtsVY~G~I~~--~---lt 177 (321)
T KOG0148|consen 108 FVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMN-GKPLTFDEV----YNQSSPDNTSVYVGNIAS--G---LT 177 (321)
T ss_pred EEeccchHHHHHHHHHhCCeeeccceeeccccccCccccC-CCCccHHHH----hccCCCCCceEEeCCcCc--c---cc
Confidence 9999999999999999999999999999999965442111 111111111 011123356677888765 2 24
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 698 ELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 698 ~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
+ ++|++.|++||.|..|.|.++ +||+||.|.+.|.|.+||..|||.+++|..++-.+..+
T Consensus 178 e-------~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 178 E-------DLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred H-------HHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 4 468999999999999999985 79999999999999999999999999999888766554
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.4e-26 Score=244.04 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=139.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
-++||||.|.+.+.++.|+..|..||+|++|.+-+|+- ..+|||||+|.-++.|..|++.|||..++|+.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47899999999999999999999999999999988864 4599999999999999999999999999999999975422
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-CC
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD-SN 730 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~-g~ 730 (967)
-+..+. -+..++.. ...-..+|+..++. +| ++ +||+.+|+.||+|+.|+|.+.++ +.
T Consensus 193 mpQAQp-----iID~vqee-----Ak~fnRiYVaSvHp--DL---Se-------~DiKSVFEAFG~I~~C~LAr~pt~~~ 250 (544)
T KOG0124|consen 193 MPQAQP-----IIDMVQEE-----AKKFNRIYVASVHP--DL---SE-------TDIKSVFEAFGEIVKCQLARAPTGRG 250 (544)
T ss_pred Ccccch-----HHHHHHHH-----HHhhheEEeeecCC--Cc---cH-------HHHHHHHHhhcceeeEEeeccCCCCC
Confidence 111000 00000111 12234566666543 44 33 68999999999999999999875 45
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 731 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 731 ~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
.+|||||+|.+...-..|+..||-++|+|..++|+..+.
T Consensus 251 HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 251 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred ccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 899999999999999999999999999999999876543
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.9e-25 Score=239.04 Aligned_cols=168 Identities=23% Similarity=0.336 Sum_probs=138.0
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccC-ceeec
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG-CSFSG 537 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng-~~l~G 537 (967)
+...-+||||-||..++|.||+.+|++||.+..| +++.|..++.++|||||.|.+.++|.+|+. |++ +.|-|
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ei------nl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEI------NLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEE------EeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 3455689999999999999999999999964443 356888999999999999999999999999 666 66666
Q ss_pred --ceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCC
Q 002093 538 --SILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEE 614 (967)
Q Consensus 538 --r~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~sk 614 (967)
.+|.|+. ...+... ....++|||+.|+..+||.+|+++|++||.|++|+|.+|. +.++
T Consensus 105 ~~~pvqvk~---------Ad~E~er----------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sR 165 (510)
T KOG0144|consen 105 MHHPVQVKY---------ADGERER----------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSR 165 (510)
T ss_pred CCcceeecc---------cchhhhc----------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccccccc
Confidence 4566652 1222111 1236799999999999999999999999999999999985 4689
Q ss_pred CEEEEeecCcchHHHHHHHhCCC-cc--CCeEEEEEEcccC
Q 002093 615 PCAFIEYVDQLVTPKAIAGLNGL-KV--GGQVLTAVQAVLD 652 (967)
Q Consensus 615 G~aFVeF~~~e~A~~Al~~LnG~-~~--~Gr~I~V~~a~~~ 652 (967)
|||||.|.+.+.|..|++.|||. .+ ...+|.|+||.+.
T Consensus 166 GcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 166 GCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred ceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 99999999999999999999994 44 4567999988543
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.92 E-value=5.2e-24 Score=239.59 Aligned_cols=168 Identities=19% Similarity=0.241 Sum_probs=143.1
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+++|+++|+++|..||.+..+ .++.+..++.++|||||+|.+.++|..||+ |||..|.++
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v------~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTC------RIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 4467899999999999999999999999964433 234666789999999999999999999998 999999999
Q ss_pred eeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCE
Q 002093 539 ILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPC 616 (967)
Q Consensus 539 ~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~ 616 (967)
+|+|.++.... ......+|||+|||..+|+++|+++|++||.|..|.|+.+. +.++||
T Consensus 178 ~i~V~~a~p~~--------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~ 237 (346)
T TIGR01659 178 RLKVSYARPGG--------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGV 237 (346)
T ss_pred eeeeecccccc--------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceE
Confidence 99998532110 01124689999999999999999999999999999999884 456899
Q ss_pred EEEeecCcchHHHHHHHhCCCccCC--eEEEEEEcccCC
Q 002093 617 AFIEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVLDG 653 (967)
Q Consensus 617 aFVeF~~~e~A~~Al~~LnG~~~~G--r~I~V~~a~~~~ 653 (967)
|||+|.+.++|.+||+.|||..|.| ++|+|.++....
T Consensus 238 aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 238 AFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred EEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999999999999999999998865 789999886543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=5.2e-23 Score=232.71 Aligned_cols=273 Identities=16% Similarity=0.173 Sum_probs=205.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
.+....|||.||++.++...|.++|+.||.+..+. |.....| ++|| ||+|.+.+.|.+|+. +||..+.|+
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~k-------v~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCK-------VATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEE-------EEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 34444599999999999999999999999655432 1122223 8999 999999999999999 999999999
Q ss_pred eeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-CCCCEE
Q 002093 539 ILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEEPCA 617 (967)
Q Consensus 539 ~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-~skG~a 617 (967)
+|.|......... ..+. .. .......++|.+++..++++.|.++|..||.|.++.++.+.. .++||+
T Consensus 144 ki~vg~~~~~~er---------~~~~--~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~g 211 (369)
T KOG0123|consen 144 KIYVGLFERKEER---------EAPL--GE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFG 211 (369)
T ss_pred eeEEeeccchhhh---------cccc--cc-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcc
Confidence 9999843221111 0000 00 112346789999999999999999999999999999988854 369999
Q ss_pred EEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCC
Q 002093 618 FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLS 697 (967)
Q Consensus 618 FVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~ 697 (967)
||+|.++++|..|+..|+|..+++..+-|..+............ ++.. .............|++.|+-.. ++
T Consensus 212 fv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~-~~~~--~~~~~~~~~~~~nl~vknld~~-----~~ 283 (369)
T KOG0123|consen 212 FVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKR-KFEQ--EFAKRSVSLQGANLYVKNLDET-----LS 283 (369)
T ss_pred ceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhh-hhHh--hhhhccccccccccccccCccc-----cc
Confidence 99999999999999999999999999999888552111000000 0000 0001111233456777774321 12
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 698 ELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 698 ~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
+ +.++..|+.||+|.++.|..+..|.++|||||+|.+.++|.+|+..|||..+.++.+.+....
T Consensus 284 ~-------e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 284 D-------EKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred h-------hHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 2 467888999999999999999999999999999999999999999999999999998875543
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.88 E-value=6.4e-22 Score=222.71 Aligned_cols=163 Identities=13% Similarity=0.210 Sum_probs=139.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++|||+|||..+|+++|+++|+.||.|..|+|+.|.. .++|||||+|.+.++|.+||+.|||..|.+++|+|.++.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 468999999999999999999999999999999998854 468999999999999999999999999999999999886
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CC
Q 002093 651 LDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DS 729 (967)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g 729 (967)
+.... .....|+|.||... +++ +||+++|++||.|+.|.|+++. ++
T Consensus 186 p~~~~---------------------~~~~~lfV~nLp~~-----vte-------e~L~~~F~~fG~V~~v~i~~d~~tg 232 (346)
T TIGR01659 186 PGGES---------------------IKDTNLYVTNLPRT-----ITD-------DQLDTIFGKYGQIVQKNILRDKLTG 232 (346)
T ss_pred ccccc---------------------cccceeEEeCCCCc-----ccH-------HHHHHHHHhcCCEEEEEEeecCCCC
Confidence 53211 12345888998542 232 5799999999999999999875 78
Q ss_pred CcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 730 NISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 730 ~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
..+|||||+|.+.++|++||+.|||..|.+....|.+.+
T Consensus 233 ~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 233 TPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 889999999999999999999999999988655554443
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=1.4e-21 Score=230.61 Aligned_cols=193 Identities=17% Similarity=0.165 Sum_probs=141.3
Q ss_pred HHHHHHHHH-ccCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcC
Q 002093 521 AEDASAALC-CDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFG 599 (967)
Q Consensus 521 ~e~A~~Al~-lng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G 599 (967)
.+.|.+||. ++|..+......... -.+ .+.+ ....+...++|||+|||..+++++|+++|++||
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~----g~P-----p~~~------~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G 83 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKY----GGP-----PPGW------SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAG 83 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccC----CCC-----CCcc------cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhC
Confidence 467888888 998777554443331 111 0000 111234468999999999999999999999999
Q ss_pred CeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccC-CeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 002093 600 PLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKK 677 (967)
Q Consensus 600 ~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~-Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 677 (967)
.|.+|+|++|. +.++|||||+|.+.++|.+||+.|||..|. |+.|.|..+.
T Consensus 84 ~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~--------------------------- 136 (578)
T TIGR01648 84 PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV--------------------------- 136 (578)
T ss_pred CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc---------------------------
Confidence 99999999883 457999999999999999999999999884 7777664431
Q ss_pred CCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCC-eEEEEEe-cC-CCCCcceeEEEEeCCHHHHHHHHHHhCC
Q 002093 678 PTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGS-VKSVNVV-KY-GDSNISTIQACEGNENTASAGVGQNLTN 754 (967)
Q Consensus 678 ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~-V~~V~I~-r~-~~g~~~G~gFVeF~~~e~A~~Ai~~LnG 754 (967)
..+.|+|.||..... .++|.++|.+|+. |+.+.+. .+ ..+...|||||+|.+.++|..|+..|+.
T Consensus 137 ~~~rLFVgNLP~~~T------------eeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 137 DNCRLFVGGIPKNKK------------REEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred cCceeEeecCCcchh------------hHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 135688899865222 2568888999863 4444443 22 3466789999999999999999998864
Q ss_pred C--ccCCCcceeEEe
Q 002093 755 D--ETNEKGERLEEV 767 (967)
Q Consensus 755 ~--~~~~r~~~v~~~ 767 (967)
. .+.++.+.|.+.
T Consensus 205 gki~l~Gr~I~VdwA 219 (578)
T TIGR01648 205 GRIQLWGHVIAVDWA 219 (578)
T ss_pred cceEecCceEEEEee
Confidence 3 466777766554
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.2e-21 Score=216.25 Aligned_cols=186 Identities=13% Similarity=0.173 Sum_probs=152.5
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
+.+|||++||+.++.++|.++|+.+|+|.++.++.++++ ++||+||.|.-.+++..|++.+++..|+|+.|.|..|.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 479999999999999999999999999999999999775 599999999999999999999999999999999999876
Q ss_pred CCCcCCC-CC-CCCCCCCCCC---CCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC
Q 002093 652 DGSIMDN-SG-NPPFHGIPKH---ALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY 726 (967)
Q Consensus 652 ~~~~~~~-~~-~~~~~~i~~~---~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~ 726 (967)
....... .+ +..+--.... .......+-+.|+|.||.....- .||+.+|+.||.|..|+||+.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~------------~dLk~vFs~~G~V~Ei~IP~k 152 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKK------------PDLKNVFSNFGKVVEIVIPRK 152 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCc------------HHHHHHHhhcceEEEEEcccC
Confidence 5543311 10 0000000000 01112334678999999775332 589999999999999999998
Q ss_pred CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeeccc
Q 002093 727 GDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHK 771 (967)
Q Consensus 727 ~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~~~ 771 (967)
..|..-|||||+|....+|.+|++.|||.+|.|+++.|-++.+..
T Consensus 153 ~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 153 KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 888777999999999999999999999999999999999987754
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.9e-22 Score=205.41 Aligned_cols=175 Identities=19% Similarity=0.283 Sum_probs=146.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
---||||.|.+.++-+.|++.|.+||++... ..|.|..|+++||||||.|...++|+.||. |||.-|.++.|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~a------kvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDA------KVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccc------eEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 4469999999999999999999999976654 356899999999999999999999999999 999999999999
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEee
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEY 621 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF 621 (967)
-.|++-......+. ...-..+-.......++||||||+..+|+++|++.|+.||.|..|+|.++ +||+||.|
T Consensus 136 TNWATRKp~e~n~~----~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qGYaFVrF 207 (321)
T KOG0148|consen 136 TNWATRKPSEMNGK----PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QGYAFVRF 207 (321)
T ss_pred ccccccCccccCCC----CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cceEEEEe
Confidence 88654432110000 00011111222345789999999999999999999999999999999997 89999999
Q ss_pred cCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 622 VDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 622 ~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.+.|.|..||..+||..++|..+++.|...
T Consensus 208 ~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 208 ETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred cchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 999999999999999999999999999754
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=2.6e-21 Score=222.63 Aligned_cols=275 Identities=18% Similarity=0.180 Sum_probs=203.4
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
..+..+.|+|+|||..+..++|...|..||. |..+.+....-.|+|+|.++.+|.+|+. |....+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~------------i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~ 448 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGE------------IGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKS 448 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccc------------cceeecCcccceeeeeecCccchHHHHHHhchhhhcc
Confidence 4456678999999999999999999999994 2233333333459999999999999999 99998888
Q ss_pred ceeEEeCCCccccc--cc--------ccc-ccc-----ccccCCcC---------C-----cccCCCceEEEcCCCcccC
Q 002093 538 SILKIKRPKEFVEV--AS--------GEA-EKS-----VASVDSVS---------G-----IVKDSPHKIFIGGISRTLS 587 (967)
Q Consensus 538 r~l~V~rp~~~~~~--~~--------~~~-~~~-----~~~~~~~~---------~-----~~~~~~~~L~V~nLp~~~t 587 (967)
.+|.+.+...-.-+ +. ... +.. ....+.+. . ......++|||.||++.+|
T Consensus 449 ~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt 528 (725)
T KOG0110|consen 449 APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTT 528 (725)
T ss_pred CccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccc
Confidence 88877653211111 00 000 000 00000000 0 0011224499999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCC-----CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCC
Q 002093 588 SKMVMEIVCAFGPLKAYHFEVNED-----HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNP 662 (967)
Q Consensus 588 eedL~e~Fsk~G~V~~v~l~~d~~-----~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~ 662 (967)
.++|...|.++|.|.++.|..-++ .+.|||||+|.++++|..|+..|+|..+.|..|.|+++. +.. ....+
T Consensus 529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~-~k~-~~~~g-- 604 (725)
T KOG0110|consen 529 LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE-NKP-ASTVG-- 604 (725)
T ss_pred hhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc-Ccc-ccccc--
Confidence 999999999999999998865432 357999999999999999999999999999999999986 111 11111
Q ss_pred CCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC-CCCCcceeEEEEeCC
Q 002093 663 PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNE 741 (967)
Q Consensus 663 ~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~-~~g~~~G~gFVeF~~ 741 (967)
... .......-|.|.|+.. +....+|+++|.+||.|.+|.||+. ..+.+.|||||+|.+
T Consensus 605 --K~~------~~kk~~tKIlVRNipF------------eAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 605 --KKK------SKKKKGTKILVRNIPF------------EATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred --ccc------ccccccceeeeeccch------------HHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 000 0112245677888755 4555789999999999999999987 455678999999999
Q ss_pred HHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 742 NTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 742 ~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
+.+|.+|+.+|.+.-|-|+-+++.++.+
T Consensus 665 ~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cHHHHHHHHhhcccceechhhheehhcc
Confidence 9999999999999999999999988754
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=8.7e-21 Score=186.52 Aligned_cols=168 Identities=23% Similarity=0.297 Sum_probs=140.7
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
...|||||||+..++++.|.++|-+.|++..+... .+..+...+|||||+|.+.|+|+-|+. ||+..|.|++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iP------kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIP------KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecc------hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 35699999999999999999999999865554222 344566789999999999999999999 99999999999
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeE-EEEeecCC--CCCCEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKA-YHFEVNED--HEEPCA 617 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~-v~l~~d~~--~skG~a 617 (967)
+|..++.. +...+...+|||+||.+.+++..|.+.|+.||++.. -.+.++.. .++||+
T Consensus 82 rv~kas~~-------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g 142 (203)
T KOG0131|consen 82 RVNKASAH-------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFG 142 (203)
T ss_pred EEEecccc-------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCe
Confidence 99854311 111233478999999999999999999999999865 35666644 568999
Q ss_pred EEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 618 FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 618 FVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
||-|.+.+.+.+|+..|||+.+..++|+|.++.....
T Consensus 143 ~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 143 FINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred EEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 9999999999999999999999999999999976544
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=9.1e-20 Score=187.13 Aligned_cols=169 Identities=11% Similarity=0.168 Sum_probs=140.2
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
.+....|.|.-||..+|+++|+.+|...|.|++|++++|+ +.+-||+||.|.++.+|.+|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4456789999999999999999999999999999999996 45689999999999999999999999999999999999
Q ss_pred cccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC-C
Q 002093 649 AVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-G 727 (967)
Q Consensus 649 a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~-~ 727 (967)
|-|...... . .-|++..+..... ..+|.++|.+||.|..-.|..+ -
T Consensus 118 ARPSs~~Ik-~--------------------aNLYvSGlPktMt------------qkelE~iFs~fGrIItSRiL~dqv 164 (360)
T KOG0145|consen 118 ARPSSDSIK-D--------------------ANLYVSGLPKTMT------------QKELEQIFSPFGRIITSRILVDQV 164 (360)
T ss_pred ccCChhhhc-c--------------------cceEEecCCccch------------HHHHHHHHHHhhhhhhhhhhhhcc
Confidence 977543211 1 1244444433222 2467888999999998888776 4
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeecccc
Q 002093 728 DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHKS 772 (967)
Q Consensus 728 ~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~~~~ 772 (967)
+|.++|.|||.|...++|+.||..|||....|-+-.+.+...+.+
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 799999999999999999999999999999888777766666544
No 34
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=5.8e-20 Score=209.90 Aligned_cols=188 Identities=17% Similarity=0.183 Sum_probs=139.1
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
..-..+.+||++||..+++.++.+++..||...++. .|.+..+|.++||||++|.++..+..|++ |||+.+++
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~------lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd 358 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR------LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD 358 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhhe------eecccccccccceeeeeeeCCcchhhhhcccchhhhcC
Confidence 345568899999999999999999999999766553 45777889999999999999999999999 99999999
Q ss_pred ceeEEeCCCcccccccccccccc-cccCCcC---CcccCCCceEEEcCCC--cccC--------HHHHHHHHHhcCCeeE
Q 002093 538 SILKIKRPKEFVEVASGEAEKSV-ASVDSVS---GIVKDSPHKIFIGGIS--RTLS--------SKMVMEIVCAFGPLKA 603 (967)
Q Consensus 538 r~l~V~rp~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~L~V~nLp--~~~t--------eedL~e~Fsk~G~V~~ 603 (967)
++|.|+++......+........ +.++... +....+...|++.|+= ..+. -++|+..|.+||.|..
T Consensus 359 ~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~ 438 (500)
T KOG0120|consen 359 KKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRS 438 (500)
T ss_pred ceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeE
Confidence 99999975432221111111000 1111111 1112234555555541 1111 1467788899999999
Q ss_pred EEEeec-C----CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 604 YHFEVN-E----DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 604 v~l~~d-~----~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
|.+.++ . ..+.|.+||+|.++++|+.|+++|+|.+|+|+.|.+.|....
T Consensus 439 v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 439 VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 999887 2 246899999999999999999999999999999999987543
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.3e-18 Score=190.79 Aligned_cols=170 Identities=17% Similarity=0.243 Sum_probs=137.6
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH--ccC-ceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC--CDG-CSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~--lng-~~l~ 536 (967)
+..+++|||||||.+.++++|.+.|+..++ ||..|... + .-....+++|||||+|.+..+|..|-. ++| +.|+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte--GVvdVivy-~-~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw 236 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE--GVVDVIVY-P-SPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW 236 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC--CeeEEEEe-c-CccccccccceEEEEeecchhHHHHHhhccCCceeec
Confidence 456899999999999999999999999874 44333110 0 111357889999999999999999998 777 8899
Q ss_pred cceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCE
Q 002093 537 GSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPC 616 (967)
Q Consensus 537 Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~ 616 (967)
|..+.|.|+-....+ . ..+...-..|||.||+..+|++.|+++|+.||.|..|..++| |
T Consensus 237 gn~~tVdWAep~~e~----d-----------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------Y 295 (506)
T KOG0117|consen 237 GNAITVDWAEPEEEP----D-----------EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------Y 295 (506)
T ss_pred CCcceeeccCcccCC----C-----------hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------e
Confidence 999999864221111 0 011223467999999999999999999999999999988766 9
Q ss_pred EEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 617 AFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 617 aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
|||.|.+.++|.+|++.|||..|.|..|.|..|.|...
T Consensus 296 aFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 296 AFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 99999999999999999999999999999999987543
No 36
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.3e-18 Score=189.91 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=127.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCc-c--CCeEEEEEE
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLK-V--GGQVLTAVQ 648 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~-~--~Gr~I~V~~ 648 (967)
.-+|||+.||..++|.||+++|++||.|..|.|++|+. -++|||||.|.+.++|.+|+.+||.++ | ...+|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 46899999999999999999999999999999999964 469999999999999999999999865 3 345678888
Q ss_pred cccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Q 002093 649 AVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD 728 (967)
Q Consensus 649 a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~ 728 (967)
|..+...... .+.|+|.-+-. ...+.+|+++|.+||.|+.|.|.+++.
T Consensus 114 Ad~E~er~~~--------------------e~KLFvg~lsK------------~~te~evr~iFs~fG~Ied~~ilrd~~ 161 (510)
T KOG0144|consen 114 ADGERERIVE--------------------ERKLFVGMLSK------------QCTENEVREIFSRFGHIEDCYILRDPD 161 (510)
T ss_pred cchhhhcccc--------------------chhhhhhhccc------------cccHHHHHHHHHhhCccchhhheeccc
Confidence 8655432211 12222221111 123357999999999999999999999
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 002093 729 SNISTIQACEGNENTASAGVGQNLTNDETNEKGE 762 (967)
Q Consensus 729 g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~ 762 (967)
+.++|++||+|.+.+.|..||++|||.....-|-
T Consensus 162 ~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs 195 (510)
T KOG0144|consen 162 GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCS 195 (510)
T ss_pred ccccceeEEEEehHHHHHHHHHhhccceeeccCC
Confidence 9999999999999999999999999987654443
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=7e-18 Score=176.41 Aligned_cols=145 Identities=21% Similarity=0.352 Sum_probs=128.9
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEe
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~ 543 (967)
+|||||||..+++.+|+.+|++||+ |+.|.+- |.||||...+...|..|+. |+|..|.|..|.|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygk------------VlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGK------------VLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCc------------eEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEE
Confidence 7999999999999999999999994 4455443 7899999999999999999 99999999999998
Q ss_pred CCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecC
Q 002093 544 RPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVD 623 (967)
Q Consensus 544 rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~ 623 (967)
..+.. .....+|+|+||.+.++.++|+..|++||+|..+.|++ +|+||.|.-
T Consensus 70 aSksK----------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~ 121 (346)
T KOG0109|consen 70 ASKSK----------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDR 121 (346)
T ss_pred ecccc----------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEee
Confidence 32211 12357899999999999999999999999999999975 499999999
Q ss_pred cchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 624 QLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 624 ~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|..|+..|+|..|.|+.+.|+.+..
T Consensus 122 ~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 122 AEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred ccchHHHHhcccccccccceeeeeeecc
Confidence 9999999999999999999999988754
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.71 E-value=3.4e-17 Score=171.26 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=131.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 653 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~ 653 (967)
+.+|||+|||..+++.+|+.+|++||.|..|.|+++ ||||...+...|.-|+..|||..|.|..|.|..+....
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 357999999999999999999999999999999865 99999999999999999999999999999998774321
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcce
Q 002093 654 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNIST 733 (967)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G 733 (967)
+++..|.+.|+-..-. + .+++..|++||.|..+.|++ +
T Consensus 76 -----------------------k~stkl~vgNis~tct----n--------~ElRa~fe~ygpviecdivk-------d 113 (346)
T KOG0109|consen 76 -----------------------KASTKLHVGNISPTCT----N--------QELRAKFEKYGPVIECDIVK-------D 113 (346)
T ss_pred -----------------------CCccccccCCCCcccc----C--------HHHhhhhcccCCceeeeeec-------c
Confidence 2455677777754322 1 35899999999999999986 6
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeeccc
Q 002093 734 IQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHK 771 (967)
Q Consensus 734 ~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~~~ 771 (967)
|+||.|.-.++|..|+..|+|++|.|+.+.|+.+++..
T Consensus 114 y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 89999999999999999999999999999999998754
No 39
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=1e-15 Score=164.01 Aligned_cols=188 Identities=17% Similarity=0.212 Sum_probs=146.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeE--------EEEeecCC-CCCCEEEEeecCcchHHHHHHHhCCCccCCeE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKA--------YHFEVNED-HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV 643 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~--------v~l~~d~~-~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~ 643 (967)
....|||.|||..+|.+++.++|+++|.|.. |.|.++.. .-+|-|.|.|...+++..|++.|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4566999999999999999999999998854 67777643 45999999999999999999999999999999
Q ss_pred EEEEEcccCCCcC---CCCCC---CCC-----------CCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHH
Q 002093 644 LTAVQAVLDGSIM---DNSGN---PPF-----------HGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLE 706 (967)
Q Consensus 644 I~V~~a~~~~~~~---~~~~~---~~~-----------~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~e 706 (967)
|.|..|.-..... ..... ... .-.|.-..+......++|+|.|||++.++. -+++.+.+|.+
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~-~~~~l~~dlke 291 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFE-KNPDLLNDLKE 291 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhc-cCHHHHHHHHH
Confidence 9999985432211 00000 000 001111112223457899999999999985 45577899999
Q ss_pred HHHHHHhcCCCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeE
Q 002093 707 DVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLE 765 (967)
Q Consensus 707 DIr~~f~kFG~V~~V~I~r~-~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~ 765 (967)
||++.|++||.|.+|.|.-. +.|. +-|.|.+.++|..||+.|+|+.|.|+.+.-.
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGv----vtV~f~n~eeA~~ciq~m~GR~fdgRql~A~ 347 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGV----VTVSFRNNEEADQCIQTMDGRWFDGRQLTAS 347 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCce----eEEEeCChHHHHHHHHHhcCeeecceEEEEE
Confidence 99999999999999999843 4454 4499999999999999999999999987643
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.68 E-value=2.7e-16 Score=155.14 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=135.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....+|||+||+..++++.|.++|-+.|+|..+++++|.-+ .+|||||+|.+.++|.-|++.||+.++.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34689999999999999999999999999999999998543 5999999999999999999999999999999999988
Q ss_pred ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEE-EEecCC-
Q 002093 650 VLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSV-NVVKYG- 727 (967)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V-~I~r~~- 727 (967)
........ -+.-|++.||-. + +++. -+-.+|+.||.|... +|.+++
T Consensus 87 s~~~~nl~--------------------vganlfvgNLd~--~---vDe~-------~L~dtFsafG~l~~~P~i~rd~~ 134 (203)
T KOG0131|consen 87 SAHQKNLD--------------------VGANLFVGNLDP--E---VDEK-------LLYDTFSAFGVLISPPKIMRDPD 134 (203)
T ss_pred cccccccc--------------------ccccccccccCc--c---hhHH-------HHHHHHHhccccccCCccccccc
Confidence 63221110 113466677643 1 2322 256679999988753 455654
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 728 DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 728 ~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
+|..+|||||.|.+.+.+.+|+..|||.-++.+.+.+.....
T Consensus 135 tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 135 TGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred CCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 588899999999999999999999999999999999887765
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=5.2e-16 Score=179.30 Aligned_cols=174 Identities=21% Similarity=0.262 Sum_probs=135.1
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
.+|||.||++.+|.++|..+|...|.+..+...--. ..+..-.|.|||||+|.++++|+.||. |+|..|.|..|.|
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk---d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK---DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc---cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 349999999999999999999998853332111000 000123466999999999999999999 9999999999999
Q ss_pred eCCCcccccccccccccccccCCcCCccc-CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEE
Q 002093 543 KRPKEFVEVASGEAEKSVASVDSVSGIVK-DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFI 619 (967)
Q Consensus 543 ~rp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFV 619 (967)
.... ..+ . ...+ ..... ...++|.|.|||+..+-.+|+++|..||.|.+|+|+.-.+ .++|||||
T Consensus 593 k~S~--~k~-~-------~~~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv 660 (725)
T KOG0110|consen 593 KISE--NKP-A-------STVG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFV 660 (725)
T ss_pred Eecc--Ccc-c-------cccc--cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceee
Confidence 8422 000 0 0000 11111 1247899999999999999999999999999999987633 45999999
Q ss_pred eecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 620 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
+|-++.+|.+|+.+|.+.-|.|+.|++.||...
T Consensus 661 ~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 661 DFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred eccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 999999999999999999999999999999543
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.63 E-value=1.5e-14 Score=157.55 Aligned_cols=278 Identities=18% Similarity=0.234 Sum_probs=180.7
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccC--ceeec
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG--CSFSG 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng--~~l~G 537 (967)
.+++-|.++|||.++||++|..++.+||.+ ........+..|||+|.+.+.|...+. ... -.+.|
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~v------------tn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~ 93 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKV------------TNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRG 93 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccce------------eeeeeeccchhhhhhhcchhhhhheeecccccCccccC
Confidence 456789999999999999999999999953 344444556799999999998877443 222 44678
Q ss_pred ceeEEeCCCc--ccc-cccc-------------ccccccccc--CCcCCcccCCC---ceEEEcCCCcccCHHHHHHHHH
Q 002093 538 SILKIKRPKE--FVE-VASG-------------EAEKSVASV--DSVSGIVKDSP---HKIFIGGISRTLSSKMVMEIVC 596 (967)
Q Consensus 538 r~l~V~rp~~--~~~-~~~~-------------~~~~~~~~~--~~~~~~~~~~~---~~L~V~nLp~~~teedL~e~Fs 596 (967)
++|.|+..+. +.. ..+. ..+...... ....+ ..+.+ -.++|.++-..++-+-|..+|+
T Consensus 94 ~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G-~~~~~n~vLr~iie~m~ypVslDVLHqvFS 172 (492)
T KOG1190|consen 94 QPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVG-NEDGPNPVLRTIIENMFYPVSLDVLHQVFS 172 (492)
T ss_pred cceeehhhhHHHHhccCchhhhhhhhHHhhhhccccccccccccccccc-ccCCCceeEEEEeccceeeeEHHHHHHHHh
Confidence 8888874221 000 0000 000000000 01101 11222 3567889999999999999999
Q ss_pred hcCCeeEEEEeecCCCCCC-EEEEeecCcchHHHHHHHhCCCcc--CCeEEEEEEcccCCCcCC---------CCCCCC-
Q 002093 597 AFGPLKAYHFEVNEDHEEP-CAFIEYVDQLVTPKAIAGLNGLKV--GGQVLTAVQAVLDGSIMD---------NSGNPP- 663 (967)
Q Consensus 597 k~G~V~~v~l~~d~~~skG-~aFVeF~~~e~A~~Al~~LnG~~~--~Gr~I~V~~a~~~~~~~~---------~~~~~~- 663 (967)
+||.|..|.-... +.| -|.|+|.+.+.|..|..+|+|+.| +-+.|+|.++.-...... .+..++
T Consensus 173 ~fG~VlKIiTF~K---nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 173 KFGFVLKIITFTK---NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred hcceeEEEEEEec---ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCC
Confidence 9999977643332 233 589999999999999999999887 455677766522110000 000000
Q ss_pred --------------C----------CCCCCCCC------CCCCCC--CeEEEccccCCCCCCCCCChHHHHHHHHHHHHH
Q 002093 664 --------------F----------HGIPKHAL------PLLKKP--TEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLE 711 (967)
Q Consensus 664 --------------~----------~~i~~~~~------~~~~~p--s~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~ 711 (967)
+ ..+|.... ...+.+ +.+|.+.|+-. +. +++ +-|..+
T Consensus 250 gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~-~~---VT~-------d~Lftl 318 (492)
T KOG1190|consen 250 GDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE-EA---VTP-------DVLFTL 318 (492)
T ss_pred CccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch-hc---cch-------hHHHHH
Confidence 0 01111110 112223 46777777632 11 122 346889
Q ss_pred HhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 712 CARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 712 f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
|.-||.|..|+|..+.. --|.|+|.+...|+-|+..|+|-.+-|+.++|..+..
T Consensus 319 FgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 319 FGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred HhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 99999999999998653 2367999999999999999999999999999888765
No 43
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.59 E-value=1.9e-14 Score=147.65 Aligned_cols=177 Identities=23% Similarity=0.312 Sum_probs=136.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHH----HHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee
Q 002093 461 RPMRRLCVENLPLSASEKALME----FLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~----~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l 535 (967)
.++.||||.||+..+..++|+. +|++||.+.. |+-+.+.+.+|.|||.|.+.+.|..|+. |+|+.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ild---------I~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF 77 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD---------ISAFKTPKMRGQAFVVFKETEAASAALRALQGFPF 77 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEE---------EEecCCCCccCceEEEecChhHHHHHHHHhcCCcc
Confidence 4455999999999999998887 9999996433 3556788899999999999999999999 999999
Q ss_pred ecceeEEeCCCccccc---ccccc---------cccc------cccC--------CcC----CcccCCCceEEEcCCCcc
Q 002093 536 SGSILKIKRPKEFVEV---ASGEA---------EKSV------ASVD--------SVS----GIVKDSPHKIFIGGISRT 585 (967)
Q Consensus 536 ~Gr~l~V~rp~~~~~~---~~~~~---------~~~~------~~~~--------~~~----~~~~~~~~~L~V~nLp~~ 585 (967)
.|++|+|++++.-.+- ..+.. +... ...+ ..+ .....+...||+.|||..
T Consensus 78 ygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~e 157 (221)
T KOG4206|consen 78 YGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSE 157 (221)
T ss_pred cCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcc
Confidence 9999999986543322 01000 0000 0000 000 111234578999999999
Q ss_pred cCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccC-CeEEEEEEc
Q 002093 586 LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQA 649 (967)
Q Consensus 586 ~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~-Gr~I~V~~a 649 (967)
++.+.|..+|+.|.....|+++.. -.+.|||+|.+...|..|...|.|..+- ...+.|.++
T Consensus 158 s~~e~l~~lf~qf~g~keir~i~~---~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 158 SESEMLSDLFEQFPGFKEIRLIPP---RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred hhHHHHHHHHhhCcccceeEeccC---CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 999999999999999999999775 5889999999999999999999998875 667777665
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=6.7e-14 Score=138.03 Aligned_cols=165 Identities=20% Similarity=0.230 Sum_probs=124.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
+..++|||||||.++-+.+|.+||.+||.+.. ++.+. .....||||+|.++-+|+-|+. .+|..+.|.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~----------ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~ 73 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIRE----------IELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC 73 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEE----------EEeccCCCCCCeeEEEecCccchhhhhhcccccccCcc
Confidence 56789999999999999999999999995222 12222 2235799999999999999999 999999999
Q ss_pred eeEEeCCCcccccccccccccccccC------CcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC
Q 002093 539 ILKIKRPKEFVEVASGEAEKSVASVD------SVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH 612 (967)
Q Consensus 539 ~l~V~rp~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~ 612 (967)
.|+|..|..+-.........+....+ .-....-.+...|.|.+||.+.+++||++...+.|.|....+.+|
T Consensus 74 rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--- 150 (241)
T KOG0105|consen 74 RLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--- 150 (241)
T ss_pred eEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---
Confidence 99999766543210000000000000 001112234578999999999999999999999999998888776
Q ss_pred CCCEEEEeecCcchHHHHHHHhCCCccC
Q 002093 613 EEPCAFIEYVDQLVTPKAIAGLNGLKVG 640 (967)
Q Consensus 613 skG~aFVeF~~~e~A~~Al~~LnG~~~~ 640 (967)
|++.|+|...++..-|+..|....|.
T Consensus 151 --g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 --GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred --cceeeeeeehhhHHHHHHhhcccccc
Confidence 69999999999999999999887663
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.52 E-value=1.9e-14 Score=158.17 Aligned_cols=173 Identities=17% Similarity=0.222 Sum_probs=141.1
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
..++||||+|+..+|++.|++.|.+||++..+. .+.+..+++++||+||+|.+++.+..+|...-..|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~------vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV------VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE------EeccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 568999999999999999999999999755431 34566779999999999999999999998777888898888
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEE
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFI 619 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFV 619 (967)
+.++.....+. . ........+|||++||..++++++++.|++||.|..+.++.|..+ .+||+||
T Consensus 79 ~k~av~r~~~~-----~---------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv 144 (311)
T KOG4205|consen 79 PKRAVSREDQT-----K---------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFV 144 (311)
T ss_pred ceeccCccccc-----c---------cccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceee
Confidence 77432211110 0 000113568999999999999999999999999999888888654 5999999
Q ss_pred eecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002093 620 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 655 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~ 655 (967)
.|.+.+.+.+++. ..-+.|+|+.+.|..|.|....
T Consensus 145 ~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 145 TFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred Eeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 9999999999986 7789999999999999886543
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.48 E-value=3.8e-12 Score=139.02 Aligned_cols=274 Identities=18% Similarity=0.255 Sum_probs=186.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeee-ecCCCcE-EEEEEcCHHHHHHHHH-ccCceee-c-
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCV-IQREKGQ-AFVEFLTAEDASAALC-CDGCSFS-G- 537 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~-~~~skG~-aFVeF~~~e~A~~Al~-lng~~l~-G- 537 (967)
--+++|+|+-+-+|-+-|..+|+.||.+ ..+. ..++.|| |.|+|.+++.|..|.. |+|..+. |
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~V------------lKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFV------------LKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGC 217 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhccee------------EEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCce
Confidence 3467899999999999999999999942 2332 2456676 9999999999999999 9997763 3
Q ss_pred ceeEEeCC--------------Cccccc--ccccccccc-----c----------ccCCc-----------CCcccC-CC
Q 002093 538 SILKIKRP--------------KEFVEV--ASGEAEKSV-----A----------SVDSV-----------SGIVKD-SP 574 (967)
Q Consensus 538 r~l~V~rp--------------~~~~~~--~~~~~~~~~-----~----------~~~~~-----------~~~~~~-~~ 574 (967)
+.|+|... .||..+ +.+..++.. + .+..+ +..... ..
T Consensus 218 CtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n 297 (492)
T KOG1190|consen 218 CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSAN 297 (492)
T ss_pred eEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCc
Confidence 45666431 123322 111000000 0 00000 001111 14
Q ss_pred ceEEEcCCC-cccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002093 575 HKIFIGGIS-RTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 653 (967)
Q Consensus 575 ~~L~V~nLp-~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~ 653 (967)
..|.|.||. ..+|.+-|..+|.-||.|..|.|..+ .+--|.|+|.+...|..|+..|+|+.+.|+.|+|.++.-..
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n---kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN---KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeec---CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 678888886 56899999999999999999999887 35689999999999999999999999999999999985443
Q ss_pred CcCCCC-----------CCCCCCCC--CCCCC-CCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeE
Q 002093 654 SIMDNS-----------GNPPFHGI--PKHAL-PLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVK 719 (967)
Q Consensus 654 ~~~~~~-----------~~~~~~~i--~~~~~-~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~ 719 (967)
...... ++.++... |.... .....|+..|.|.|+...-. +||++..|..-|-..
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svs------------ee~lk~~f~~~g~~v 442 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVS------------EEDLKNLFQEPGGQV 442 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccc------------hhHHHHhhhcCCceE
Confidence 322211 11111111 11111 11346778899999865322 268999998877654
Q ss_pred E-EEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCC-cceeEEe
Q 002093 720 S-VNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEK-GERLEEV 767 (967)
Q Consensus 720 ~-V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r-~~~v~~~ 767 (967)
+ .+... ...-++++++.+.|+|..|+..|+...+++. -++|..+
T Consensus 443 kafkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 443 KAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred EeeeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 3 33322 2345789999999999999999999999887 3445443
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=8.7e-14 Score=143.94 Aligned_cols=78 Identities=15% Similarity=0.315 Sum_probs=71.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||-.||....+.+|..+|-.||.|.+.+|..|. +.+|.|+||.|.++.+|+.||.+|||+.|+-+.|+|+.--|
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 4789999999999999999999999999998887775 45799999999999999999999999999999999976544
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.45 E-value=2.1e-12 Score=144.55 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=128.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V 542 (967)
.--|-+.+||.++|+++|.+||+.++ |.. .++.+.+++..|-|||+|.+.+++.+||+.+-..+..+-|.|
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~----I~~-----~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEV 80 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG----IEN-----LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEV 80 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc----eeE-----EEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEE
Confidence 34678899999999999999998876 332 346667799999999999999999999999999999999999
Q ss_pred eCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeE-EEEeecC-CCCCCEEEEe
Q 002093 543 KRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKA-YHFEVNE-DHEEPCAFIE 620 (967)
Q Consensus 543 ~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~-v~l~~d~-~~skG~aFVe 620 (967)
-.... .+..+... ..+.........|-+.+||+.+|++||.+||+-.-.|.. |.++.+. ....|-|||+
T Consensus 81 f~~~~--------~e~d~~~~-~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVq 151 (510)
T KOG4211|consen 81 FTAGG--------AEADWVMR-PGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQ 151 (510)
T ss_pred EccCC--------cccccccc-CCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEE
Confidence 73211 01111100 011111134567889999999999999999998777766 5566663 4568999999
Q ss_pred ecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 621 YVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 621 F~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
|.+.+.|++||. -|-..|+-+-|.|-.+
T Consensus 152 F~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 152 FESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred ecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 999999999996 5667788888888654
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=7.9e-13 Score=136.96 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=67.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCC-ccC--CeEEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGL-KVG--GQVLTAVQ 648 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~-~~~--Gr~I~V~~ 648 (967)
..++||||-|...-.|+|++.+|..||.|..|.+.+.. +.+||||||.|.+..+|..||..|||. .+- .-.|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 45789999999999999999999999999999998875 568999999999999999999999994 343 34578877
Q ss_pred c
Q 002093 649 A 649 (967)
Q Consensus 649 a 649 (967)
+
T Consensus 98 A 98 (371)
T KOG0146|consen 98 A 98 (371)
T ss_pred c
Confidence 6
No 50
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.41 E-value=4.2e-12 Score=136.55 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=133.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeee---ecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCV---IQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~---~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
..+..|||.|||.++|.+++.++|+.||.+.. .++...|-+..+ .|.-+|=|.|.|...+++..|+. |++..|.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~--d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMR--DPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEec--cCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34557999999999999999999999995332 334444444443 37778999999999999999999 9999999
Q ss_pred cceeEEeCCCc-----cccccccc-ccc------cccc------cCCcCCcccCCCceEEEcCCCc----ccC-------
Q 002093 537 GSILKIKRPKE-----FVEVASGE-AEK------SVAS------VDSVSGIVKDSPHKIFIGGISR----TLS------- 587 (967)
Q Consensus 537 Gr~l~V~rp~~-----~~~~~~~~-~~~------~~~~------~~~~~~~~~~~~~~L~V~nLp~----~~t------- 587 (967)
|+.|+|.+++- |.+..-.. ... .... +............+|.|.|+-. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999998652 22110000 000 0000 0001111223457888888731 122
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 588 SKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 588 eedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.++|.+.|++||.|..|.|.-. ...|.+-|.|.+.++|..||+.|+|++|+||.|.+..-
T Consensus 290 kedl~eec~K~G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 4678899999999999877432 25899999999999999999999999999999998654
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.40 E-value=2.8e-11 Score=130.70 Aligned_cols=262 Identities=19% Similarity=0.131 Sum_probs=186.0
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH---ccCceeecce
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC---CDGCSFSGSI 539 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~---lng~~l~Gr~ 539 (967)
+-.|.|++|...++|.+|.+.++.|| +|..+.....+..|.|+|.+.+.|..|+. -|...+.|+.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG------------~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFG------------PIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCC------------ceEEEEeccccceeeeeeccccchhhheehhccCcccccCch
Confidence 34799999999999999999999999 55667777888999999999999999987 4456667766
Q ss_pred eEEeCCC-cccccccccccccccccCCcCCcccCCCce-EE--EcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCC
Q 002093 540 LKIKRPK-EFVEVASGEAEKSVASVDSVSGIVKDSPHK-IF--IGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEP 615 (967)
Q Consensus 540 l~V~rp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~--V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG 615 (967)
--+...+ +.+.. + + .....++. |. |-|--..+|.+-|..+|...|+|..|.|.+. .--
T Consensus 99 Al~NyStsq~i~R-----------~---g-~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk---ngV 160 (494)
T KOG1456|consen 99 ALFNYSTSQCIER-----------P---G-DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK---NGV 160 (494)
T ss_pred hhcccchhhhhcc-----------C---C-CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec---cce
Confidence 5554211 00000 0 0 01112333 33 3344467899999999999999999988775 234
Q ss_pred EEEEeecCcchHHHHHHHhCCCcc--CCeEEEEEEcccCCCcCC------------------CCCCC--------CC---
Q 002093 616 CAFIEYVDQLVTPKAIAGLNGLKV--GGQVLTAVQAVLDGSIMD------------------NSGNP--------PF--- 664 (967)
Q Consensus 616 ~aFVeF~~~e~A~~Al~~LnG~~~--~Gr~I~V~~a~~~~~~~~------------------~~~~~--------~~--- 664 (967)
.|.|||.+.+.|++|.++|||..| +-..|+|.||.|...... ..+.. ..
T Consensus 161 QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~ 240 (494)
T KOG1456|consen 161 QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGY 240 (494)
T ss_pred eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCC
Confidence 799999999999999999999766 677899999977532100 00000 00
Q ss_pred -----CC-----------CCC----------------CCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 002093 665 -----HG-----------IPK----------------HALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLEC 712 (967)
Q Consensus 665 -----~~-----------i~~----------------~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f 712 (967)
.+ -|. .+.+....+..|+.+..|-- . ....+-|..+|
T Consensus 241 ~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh---~--------k~N~drlFNl~ 309 (494)
T KOG1456|consen 241 HPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDH---G--------KMNCDRLFNLF 309 (494)
T ss_pred ChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccc---c--------ccchhhhhhhh
Confidence 00 000 01122345677887776521 1 11235578899
Q ss_pred hcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 713 ARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 713 ~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
..||.|+.|++++..+ |.|.|+..+..+.++|+.-||+-.+-|..+.+..+..
T Consensus 310 ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 310 CLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred hhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 9999999999998654 4567999999999999999999999988888776654
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.36 E-value=5.5e-12 Score=138.23 Aligned_cols=247 Identities=13% Similarity=0.026 Sum_probs=176.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...+.+||.|||+++...+|++||..-. -.+..++ ++-...++++|+|.|||.++|.+++|++ ||...+.|++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekv--Gev~yve----Ll~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~ 115 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKV--GEVEYVE----LLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRE 115 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhc--CceEeee----eecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCce
Confidence 4556799999999999999999997532 1233332 2344568999999999999999999999 9999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-CCCCEEE
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEEPCAF 618 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-~skG~aF 618 (967)
|.|.-..+-.-.+. ..+ .......|++++...+-..-|...|.--|.+..-.+.+|.+ .+++..|
T Consensus 116 l~vKEd~d~q~~~~-------------~~~-~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t 181 (608)
T KOG4212|consen 116 LVVKEDHDEQRDQY-------------GRI-VRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNT 181 (608)
T ss_pred EEEeccCchhhhhh-------------hhe-eeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCc
Confidence 99983222111000 011 11245688899988888888888887777665555555643 5789999
Q ss_pred EeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCCh
Q 002093 619 IEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSE 698 (967)
Q Consensus 619 VeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~ 698 (967)
+.|.+.-.+..++..+++...--+++.+ +. +.-...++|.||-... ..
T Consensus 182 ~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f~--------------------------pPl~~k~fvanl~~~v-----g~ 229 (608)
T KOG4212|consen 182 NTMSNDYNNSSNYNLFGLSASFLRSLHI-FS--------------------------PPLHNKVFVANLDYKV-----GN 229 (608)
T ss_pred cccccccccchhhhcccchhhhhhhccC-CC--------------------------CCccceeeeecccccc-----ch
Confidence 9999888888887755554333333321 11 0011223466664321 21
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEE
Q 002093 699 LEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 766 (967)
Q Consensus 699 ~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~ 766 (967)
..|++.|.--|.|++|.+--+..|.+.||+.|+|..+-+|.+||..|++--+.++...+..
T Consensus 230 -------~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 230 -------KKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred -------HHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 3578888889999999988888888999999999999999999999998777777666543
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.35 E-value=4.1e-12 Score=126.30 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=75.2
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|..|++.|||..|+|+.|.|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 467899999999999999999999999999999998853 469999999999999999999999999999999999986
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 5443
No 54
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=2.4e-12 Score=133.58 Aligned_cols=164 Identities=19% Similarity=0.298 Sum_probs=125.1
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
.+||||+||+.+.+.+|..||..||.+..+ .+ -.||+||+|.++.+|.-|+. |||..|.|..+.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~------------~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDA------------DM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccc------------ee--ecccceeccCchhhhhcccchhcCceecceeeee
Confidence 479999999999999999999999963331 11 25889999999999999999 9999999988877
Q ss_pred eCCCcccccccccccccccccCCcC--CcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEe
Q 002093 543 KRPKEFVEVASGEAEKSVASVDSVS--GIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIE 620 (967)
Q Consensus 543 ~rp~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVe 620 (967)
.++....... +.+... .-.+... .......+.|+|.+++..+.+.+|.+.|.++|.+....+ ..+++||+
T Consensus 68 e~~r~~~~~~-g~~~~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~ 139 (216)
T KOG0106|consen 68 EHARGKRRGR-GRPRGG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVE 139 (216)
T ss_pred eccccccccc-CCCCCC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hcccccee
Confidence 7655321111 000000 0000000 111234578999999999999999999999999954433 47899999
Q ss_pred ecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 621 YVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 621 F~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
|...++|..|+..|+|..+.|+.|++...
T Consensus 140 Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 140 FSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ehhhhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999999444
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.31 E-value=4.6e-11 Score=122.98 Aligned_cols=169 Identities=16% Similarity=0.218 Sum_probs=123.6
Q ss_pred CceEEEcCCCcccCHHHHHH----HHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 574 PHKIFIGGISRTLSSKMVME----IVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e----~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
..+|||.||+..+.-++|+. +|+.||.|.+|...+. ...+|-|||.|.+++.|..|+..|+|+.|.|+++.|+||
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt-~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT-PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC-CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 34999999999999998877 9999999999876543 346999999999999999999999999999999999998
Q ss_pred ccCCCcCCC------------------------CCCC-----CCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHH
Q 002093 650 VLDGSIMDN------------------------SGNP-----PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELE 700 (967)
Q Consensus 650 ~~~~~~~~~------------------------~~~~-----~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~ 700 (967)
......... ..+. +..+++.........|..+|++.|+....+
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~-------- 159 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESE-------- 159 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchh--------
Confidence 543221110 0000 001111111111245788899998865322
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCC
Q 002093 701 VEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNE 759 (967)
Q Consensus 701 ~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~ 759 (967)
.+. +..+|+.|...+.|.++.. ..+.+||+|.+.-.|..|.+.|.|..+.-
T Consensus 160 -~e~---l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 160 -SEM---LSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred -HHH---HHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceecc
Confidence 133 3445777777777777753 35779999999999999999999998873
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.30 E-value=2.2e-11 Score=123.70 Aligned_cols=169 Identities=20% Similarity=0.324 Sum_probs=114.6
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeec----CCCcEEEEEEcCHHHHHHHHH-ccCce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ----REKGQAFVEFLTAEDASAALC-CDGCS 534 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~----~skG~aFVeF~~~e~A~~Al~-lng~~ 534 (967)
...-+||||.+||.++...+|..+|..|- |. ++. .-..+. ..+-+|||.|.+.+.|..|+. |||+.
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~---GY---Egs---lLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvr 101 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFH---GY---EGS---LLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVR 101 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCC---Cc---cce---eeeeccCCCccccceEEEEecchHHHHHHHHHhcCee
Confidence 34568999999999999999999998873 22 111 111222 235799999999999999999 99999
Q ss_pred ee---cceeEEeCCCccccc-------ccccc-----------cc---------------ccccc---------CCcC--
Q 002093 535 FS---GSILKIKRPKEFVEV-------ASGEA-----------EK---------------SVASV---------DSVS-- 567 (967)
Q Consensus 535 l~---Gr~l~V~rp~~~~~~-------~~~~~-----------~~---------------~~~~~---------~~~~-- 567 (967)
|. +..|+|..++..... .++.. .. ..+.+ ....
T Consensus 102 FDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~ 181 (284)
T KOG1457|consen 102 FDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSE 181 (284)
T ss_pred eccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchh
Confidence 94 667776543221110 00000 00 00000 0000
Q ss_pred ----------------------CcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcc
Q 002093 568 ----------------------GIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQL 625 (967)
Q Consensus 568 ----------------------~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e 625 (967)
......-.+|||.||..++|+++|+.+|+.|-....++|... .+..+|||+|.+++
T Consensus 182 ~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~~vaf~~~~~~~ 259 (284)
T KOG1457|consen 182 ALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGMPVAFADFEEIE 259 (284)
T ss_pred hhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCcceEeecHHHHH
Confidence 000011247999999999999999999999988766665321 24669999999999
Q ss_pred hHHHHHHHhCCCcc
Q 002093 626 VTPKAIAGLNGLKV 639 (967)
Q Consensus 626 ~A~~Al~~LnG~~~ 639 (967)
.|..|+..|+|..|
T Consensus 260 ~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 260 QATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHhhccee
Confidence 99999999998765
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.27 E-value=1.2e-11 Score=123.03 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|.+||.+..+ .++.+..++.++|||||+|.+.++|..||. ||+..|.|+.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v------~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDA------KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEE------EEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345689999999999999999999999964433 234666788999999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|+|.+..
T Consensus 106 l~V~~a~ 112 (144)
T PLN03134 106 IRVNPAN 112 (144)
T ss_pred EEEEeCC
Confidence 9998654
No 58
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.25 E-value=1.4e-09 Score=117.79 Aligned_cols=275 Identities=19% Similarity=0.208 Sum_probs=177.3
Q ss_pred CCCCCEEEEeCCC--CcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHH-ccCcee
Q 002093 460 NRPMRRLCVENLP--LSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALC-CDGCSF 535 (967)
Q Consensus 460 ~~~~r~LyVgNLp--~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~-lng~~l 535 (967)
..+++-|.+.=|. +.+|-+-|..+.++.|+ |..+.+ .+..-.|.|||.+.+.|++|.+ |||..|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk------------VlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGK------------VLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCc------------eEEEEEEeccceeeEEeechhHHHHHHHhhcccccc
Confidence 4455666665554 57899999999999884 333333 2333469999999999999999 999776
Q ss_pred e-c-ceeEEeCCC--------------ccccccc-cc-------------------cccccc--c----c----------
Q 002093 536 S-G-SILKIKRPK--------------EFVEVAS-GE-------------------AEKSVA--S----V---------- 563 (967)
Q Consensus 536 ~-G-r~l~V~rp~--------------~~~~~~~-~~-------------------~~~~~~--~----~---------- 563 (967)
. | .+|+|..++ +|..+.. +. ...+.. . .
T Consensus 185 YsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~ 264 (494)
T KOG1456|consen 185 YSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPP 264 (494)
T ss_pred cccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCC
Confidence 3 3 566665432 1211100 00 000000 0 0
Q ss_pred ------------CCcCCcccCCCceEEEcCCCc-ccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHH
Q 002093 564 ------------DSVSGIVKDSPHKIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKA 630 (967)
Q Consensus 564 ------------~~~~~~~~~~~~~L~V~nLp~-~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~A 630 (967)
+..+.........+.|.+|.. .++.+.|..+|..||.|..|.+++. ..|.|.|++.+....++|
T Consensus 265 P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~gtamVemgd~~aver~ 341 (494)
T KOG1456|consen 265 PSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KPGTAMVEMGDAYAVERA 341 (494)
T ss_pred CCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---ccceeEEEcCcHHHHHHH
Confidence 000001112346788999984 5778899999999999999999876 578999999999999999
Q ss_pred HHHhCCCccCCeEEEEEEcccCCCcCC-----CCC-----------CCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCC
Q 002093 631 IAGLNGLKVGGQVLTAVQAVLDGSIMD-----NSG-----------NPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFS 694 (967)
Q Consensus 631 l~~LnG~~~~Gr~I~V~~a~~~~~~~~-----~~~-----------~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~ 694 (967)
+..||+..+-|.+|.|..+..+..... ..+ +..|..-...++.....|++||...|..- .
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~--~-- 417 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPL--G-- 417 (494)
T ss_pred HHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCC--c--
Confidence 999999999999999988755432211 001 11111111122344567899999888743 2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 002093 695 SLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKG 761 (967)
Q Consensus 695 ~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~ 761 (967)
++++.+..|+.+... .-.+|+|..-.... ...|.++|++.++|..||..||-..+.+..
T Consensus 418 -vtEe~l~~i~nek~v------~~~svkvFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~p~ 476 (494)
T KOG1456|consen 418 -VTEEQLIGICNEKDV------PPTSVKVFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEGPN 476 (494)
T ss_pred -cCHHHHHHHhhhcCC------CcceEEeecccccc-cccceeeeehHHHHHHHHHHhccccccCCC
Confidence 466655555433211 13455555332222 235789999999999999999998887654
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.21 E-value=2.9e-11 Score=103.92 Aligned_cols=69 Identities=20% Similarity=0.467 Sum_probs=64.7
Q ss_pred EEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec-CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEE
Q 002093 577 IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 645 (967)
Q Consensus 577 L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d-~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~ 645 (967)
|||+|||..+++++|+++|++||.|..+.+..+ .+..+|+|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999885 445699999999999999999999999999999985
No 60
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=5.4e-10 Score=110.74 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=122.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
..+.|||+|||..+.+.+|.++|.+||.|..|.|... ....+||||+|.++-+|..||..-+|..++|..|.|.++--.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r-~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR-PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC-CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 3578999999999999999999999999999987432 223789999999999999999999999999999999998544
Q ss_pred CCcCCCCCCCCC---CC-CCCC-CCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC
Q 002093 653 GSIMDNSGNPPF---HG-IPKH-ALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG 727 (967)
Q Consensus 653 ~~~~~~~~~~~~---~~-i~~~-~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~ 727 (967)
.....-.++-.- .+ -... -.+.+......+++..|+.... + +||+....+-|.|-...+.++
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgS-----W-------QDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGS-----W-------QDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCc-----h-------HHHHHHHHhhCCeeeeeeecc-
Confidence 321110000000 00 0000 0011111223455556554322 2 467777777899999999886
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 002093 728 DSNISTIQACEGNENTASAGVGQNLTNDETNEKGER 763 (967)
Q Consensus 728 ~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~ 763 (967)
|++.|+|-..++-+=|+..|....|-...+.
T Consensus 151 -----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~ 181 (241)
T KOG0105|consen 151 -----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGET 181 (241)
T ss_pred -----cceeeeeeehhhHHHHHHhhccccccCcCcE
Confidence 3677999999999999999988877665554
No 61
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.20 E-value=5.3e-11 Score=131.13 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=132.4
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...+|||++|+..++++.|++.|.+||.|..+.+.+|.. .++||+||+|.+++.+..+|. ..-+.|.|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 467999999999999999999999999999999999854 469999999999999999886 44578999999999987
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CC
Q 002093 651 LDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DS 729 (967)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g 729 (967)
+........ ....++.+++..+..... ++++++.|++||.|..+.|+.+. ..
T Consensus 84 ~r~~~~~~~---------------~~~~tkkiFvGG~~~~~~------------e~~~r~yfe~~g~v~~~~~~~d~~~~ 136 (311)
T KOG4205|consen 84 SREDQTKVG---------------RHLRTKKIFVGGLPPDTT------------EEDFKDYFEQFGKVADVVIMYDKTTS 136 (311)
T ss_pred Ccccccccc---------------cccceeEEEecCcCCCCc------------hHHHhhhhhccceeEeeEEeeccccc
Confidence 755432111 011466777776543211 26799999999999999998874 67
Q ss_pred CcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 730 NISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 730 ~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
..+||+||+|.+.+.+.+++. .....|+++++.|..++-
T Consensus 137 ~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 137 RPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 889999999999998877654 456777777777655543
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.5e-11 Score=126.06 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=120.1
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
..+||++||..+.+.+|..||..||.|.+|.+ ..||+||+|.+.-+|.-|+..|||..|+|-.+.|.++....-
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee------ecccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 36899999999999999999999999998877 368999999999999999999999999999888888865322
Q ss_pred cCCCCCCCCCCCC-C-CCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcc
Q 002093 655 IMDNSGNPPFHGI-P-KHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNIS 732 (967)
Q Consensus 655 ~~~~~~~~~~~~i-~-~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~ 732 (967)
.. +......- + ............++.+.|+-. ..-..||...|.+||.+..+.+ ..
T Consensus 76 ~~---g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~------------r~~~qdl~d~~~~~g~~~~~~~-------~~ 133 (216)
T KOG0106|consen 76 GR---GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSL------------RVSWQDLKDHFRPAGEVTYVDA-------RR 133 (216)
T ss_pred cc---CCCCCCCccchhhccCCcccccceeeeccchh------------hhhHHHHhhhhcccCCCchhhh-------hc
Confidence 11 00000000 0 000000112234555555422 1223578999999999955544 45
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCccee
Q 002093 733 TIQACEGNENTASAGVGQNLTNDETNEKGERL 764 (967)
Q Consensus 733 G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v 764 (967)
+++||+|.+.++|..|+..|+|.+++++.+.+
T Consensus 134 ~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 134 NFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeehhhhhhhhcchhccchhhcCceeee
Confidence 78899999999999999999999999999887
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=4.3e-11 Score=127.91 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=77.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
.+.+++|+|+|||+...+-||+.+|.+||.|.+|.|+-+...+|||+||.|.++++|.+|.+.|||..+.||+|.|..|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45689999999999999999999999999999999999887899999999999999999999999999999999999986
Q ss_pred cC
Q 002093 651 LD 652 (967)
Q Consensus 651 ~~ 652 (967)
+.
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 64
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.14 E-value=6.3e-11 Score=101.79 Aligned_cols=69 Identities=33% Similarity=0.497 Sum_probs=58.8
Q ss_pred EEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 466 LCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 466 LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
|||+|||+.+|+++|+++|++||.+..+ .+.....+..+|||||+|.+.++|..|++ |||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~-------~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESI-------KVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEE-------EEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccc-------cccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999964332 11122557789999999999999999999 999999999885
No 65
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.12 E-value=3.4e-10 Score=121.63 Aligned_cols=140 Identities=18% Similarity=0.289 Sum_probs=102.2
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
..+|||+|||..+|+++|.++|..||.+..+. .+.+..++.++|||||+|.+.++|..|+. ++|..|.|+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~------~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR------LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE------eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 68999999999999999999999999754432 22455789999999999999999999999 999999999999
Q ss_pred EeCCCc-ccccccccc--ccc-ccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEee
Q 002093 542 IKRPKE-FVEVASGEA--EKS-VASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEV 608 (967)
Q Consensus 542 V~rp~~-~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~ 608 (967)
|..... ......... ... .................+++.+++..++...+...|..+|.+..+.+..
T Consensus 189 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 189 VQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred eeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 996432 110000000 000 0000111112233457899999999999999999999999996655533
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.07 E-value=4.7e-10 Score=119.63 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=71.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..||. |||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57899999999999999999999999999999988854 47999999999999999995 9999999999999998543
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.3e-10 Score=107.32 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=69.4
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
+.+.++|||||||.+.+||++|.+||+.+|.+..|. .=++..+...=|||||+|.+.++|..||. ++|..|..
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irrii------MGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRII------MGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeE------eccccCCcCccceEEEEEecchhHHHHHHHhccCcccc
Confidence 346789999999999999999999999999643320 11344455566999999999999999999 99999999
Q ss_pred ceeEEeCCCccc
Q 002093 538 SILKIKRPKEFV 549 (967)
Q Consensus 538 r~l~V~rp~~~~ 549 (967)
++|+|.+...|.
T Consensus 106 r~ir~D~D~GF~ 117 (153)
T KOG0121|consen 106 RPIRIDWDAGFV 117 (153)
T ss_pred cceeeeccccch
Confidence 999998654444
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.05 E-value=4.9e-10 Score=119.47 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V 542 (967)
.++|||+|||+.+|+++|++||+.||.+..+..+ .+ +..+|||||+|.++++|..||.|||..|.|+.|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~------~d---~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQ------SE---NERSQIAYVTFKDPQGAETALLLSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe------ec---CCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEE
Confidence 4699999999999999999999999964332111 11 23579999999999999999999999999999999
Q ss_pred eCCCccccc
Q 002093 543 KRPKEFVEV 551 (967)
Q Consensus 543 ~rp~~~~~~ 551 (967)
.+..+|..+
T Consensus 75 t~a~~~~~p 83 (260)
T PLN03120 75 TPAEDYQLP 83 (260)
T ss_pred EeccCCCCC
Confidence 987777543
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=2.1e-09 Score=115.52 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=111.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
..+|||+|||..+++++|.++|..||.|..|.+..+. +.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999998885 56799999999999999999999999999999999999753
Q ss_pred -CCCcCCCCC--CCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Q 002093 652 -DGSIMDNSG--NPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD 728 (967)
Q Consensus 652 -~~~~~~~~~--~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~ 728 (967)
......... ...+..-..............+.+.|+..... ..++...|..+|.+..+.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTA------------EEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccc------------hhHHHHhccccccceeeeccCCCC
Confidence 111100000 00000000001111223445556665544322 246788899999997777765543
Q ss_pred CC-cceeEEEEeCCHHHHHHHHHH
Q 002093 729 SN-ISTIQACEGNENTASAGVGQN 751 (967)
Q Consensus 729 g~-~~G~gFVeF~~~e~A~~Ai~~ 751 (967)
+. ...+.++.+.....+..+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 263 GKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred CcccccccccchhHHHhhhhhhcc
Confidence 32 333344555555545444443
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=4.8e-10 Score=110.69 Aligned_cols=75 Identities=19% Similarity=0.358 Sum_probs=70.4
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+||+..+++.+|..+|.+||+|..|.|... ..|||||||.++-+|..|+..|+|..|.|..|.|..+.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec---CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 679999999999999999999999999999998775 589999999999999999999999999999999988744
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.04 E-value=1.2e-09 Score=127.74 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
-++|||||.|+..++|.+|.++|+.||. |..+.....+|+|||.+..-++|.+||. |+...+.++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGe------------iqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~I 487 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGE------------IQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTI 487 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhccc------------ceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceee
Confidence 3579999999999999999999999994 3455566789999999999999999999 99999999999
Q ss_pred EEeCCC
Q 002093 541 KIKRPK 546 (967)
Q Consensus 541 ~V~rp~ 546 (967)
+|.|+-
T Consensus 488 ki~Wa~ 493 (894)
T KOG0132|consen 488 KIAWAV 493 (894)
T ss_pred EEeeec
Confidence 998754
No 72
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=1.8e-09 Score=117.20 Aligned_cols=280 Identities=14% Similarity=0.191 Sum_probs=180.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
....-|-.++||...+..+|..||.- ++...+...+....-++..|.|.|.|.+++.-+.|+..+...+.++.|
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~g------l~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryi 131 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKG------LNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYI 131 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhh------hhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCce
Confidence 33445667899999999999999954 334444333344445777889999999999999999988888899999
Q ss_pred EEeCCCccc--ccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhc----CCeeEEEEeec-CCCC
Q 002093 541 KIKRPKEFV--EVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAF----GPLKAYHFEVN-EDHE 613 (967)
Q Consensus 541 ~V~rp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~----G~V~~v~l~~d-~~~s 613 (967)
.|-.+..-. ....+... ... ........-.|-+.+||+.+++.++.+||... |....|.++.- .+.-
T Consensus 132 evYka~ge~f~~iagg~s~---e~~---~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrp 205 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSN---EAA---PFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRP 205 (508)
T ss_pred eeeccCchhheEecCCccc---cCC---CCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCc
Confidence 987543211 11000000 000 00001123346678999999999999999743 23445656555 4556
Q ss_pred CCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC--------CC---cCCCCCCCCCCCCCCCCCCCCCCCCeEE
Q 002093 614 EPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD--------GS---IMDNSGNPPFHGIPKHALPLLKKPTEVL 682 (967)
Q Consensus 614 kG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~--------~~---~~~~~~~~~~~~i~~~~~~~~~~ps~vl 682 (967)
.|-|||.|...++|+.||. -|-..++-|-|.+-++... .. .....+...++++|..-.+ ...+..||
T Consensus 206 TGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p-~~~~kdcv 283 (508)
T KOG1365|consen 206 TGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVP-PTRSKDCV 283 (508)
T ss_pred ccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCC-CCCCCCee
Confidence 8999999999999999996 4555666665654333111 00 0000111112222211111 11235577
Q ss_pred EccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCC-eEE--EEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCC
Q 002093 683 KLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGS-VKS--VNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNE 759 (967)
Q Consensus 683 ~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~-V~~--V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~ 759 (967)
.|..+. |+...|||-..|.-|-. |.. |.++-+..|.-.|-+||+|.+.++|..|.+.-+...-..
T Consensus 284 RLRGLP------------y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~ 351 (508)
T KOG1365|consen 284 RLRGLP------------YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKS 351 (508)
T ss_pred EecCCC------------hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhccc
Confidence 776654 34556777777766653 444 778888899999999999999999999998887776667
Q ss_pred CcceeEE
Q 002093 760 KGERLEE 766 (967)
Q Consensus 760 r~~~v~~ 766 (967)
+.+.|-+
T Consensus 352 RYiEvfp 358 (508)
T KOG1365|consen 352 RYIEVFP 358 (508)
T ss_pred ceEEEee
Confidence 7776655
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.03 E-value=5.9e-10 Score=124.00 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=70.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCc--chHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQ--LVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~--e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
..+||||||++.+++++|...|..||.|..|.|++.++ +|||||+|.+. .++.+||..|||..+.|+.|+|..|.|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 57899999999999999999999999999999996654 99999999988 678999999999999999999998744
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.01 E-value=1.3e-09 Score=92.71 Aligned_cols=71 Identities=27% Similarity=0.554 Sum_probs=66.2
Q ss_pred eEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEE
Q 002093 576 KIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 646 (967)
Q Consensus 576 ~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V 646 (967)
+|||+|||..+++++|+++|..||.|..+.+..+.+.++|+|||+|.+.++|..|+..|+|..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999988776556899999999999999999999999999999987
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.01 E-value=6.5e-10 Score=96.18 Aligned_cols=69 Identities=22% Similarity=0.456 Sum_probs=62.0
Q ss_pred EEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEE
Q 002093 577 IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 645 (967)
Q Consensus 577 L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~ 645 (967)
|||+|||..+++++|+++|+.||.|..+.+..++. ..+|+|||+|.+.++|..|++.++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999988753 3589999999999999999999999999999884
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=99.05 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=73.2
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
+....-|||.|||..+|.+++.++|.+||.|..|+|-..++ .+|.|||.|.++.+|.+|+..|+|+.+.++.|.|-+..
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 34467899999999999999999999999999999854433 49999999999999999999999999999999998876
Q ss_pred cCC
Q 002093 651 LDG 653 (967)
Q Consensus 651 ~~~ 653 (967)
+..
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 643
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.2e-09 Score=113.01 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=74.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++|-|.||+.++++++|+++|.+||.|..|+|.+|+.+ ++|||||.|.+.++|.+||+.|||+-+..-.|.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4578999999999999999999999999999999999654 69999999999999999999999999999999999997
Q ss_pred cC
Q 002093 651 LD 652 (967)
Q Consensus 651 ~~ 652 (967)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=116.59 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=67.8
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
.....++|+|.|||+..-+.||+.+|.+||.+..|+.| ..-..|||||||+|.++++|++|-+ |+|..+.|
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEII--------fNERGSKGFGFVTmen~~dadRARa~LHgt~VEG 163 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEII--------FNERGSKGFGFVTMENPADADRARAELHGTVVEG 163 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEE--------eccCCCCccceEEecChhhHHHHHHHhhcceeec
Confidence 34567899999999999999999999999964443211 1224589999999999999999999 99999999
Q ss_pred ceeEEeCCCc
Q 002093 538 SILKIKRPKE 547 (967)
Q Consensus 538 r~l~V~rp~~ 547 (967)
++|.|.+++.
T Consensus 164 RkIEVn~ATa 173 (376)
T KOG0125|consen 164 RKIEVNNATA 173 (376)
T ss_pred eEEEEeccch
Confidence 9999996543
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1e-09 Score=103.04 Aligned_cols=77 Identities=12% Similarity=0.263 Sum_probs=70.4
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
..++|||+||+..++|++|.++|++.|.|..|.+-.|+ .+..|||||+|.+.++|..|+.-++|..+..++|.|-+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999998776664 356899999999999999999999999999999999775
No 80
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=3.5e-11 Score=118.96 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=78.8
Q ss_pred ccCCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee
Q 002093 457 TQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (967)
Q Consensus 457 ~~~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l 535 (967)
.+.-..+.-|||||||+.+||.||..+|++||.+..|+ +|.+..||.++||||+.|.+.-++-.|+. |||+.|
T Consensus 29 H~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin------LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki 102 (219)
T KOG0126|consen 29 HQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN------LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI 102 (219)
T ss_pred hhhcccceEEEECCCcccccCCcEEEEeeccCceEEEE------EEecCCCCcccceEEEEecCccceEEEEeccCCcee
Confidence 44456777999999999999999999999999866653 55889999999999999999999999999 999999
Q ss_pred ecceeEEeCCCccccc
Q 002093 536 SGSILKIKRPKEFVEV 551 (967)
Q Consensus 536 ~Gr~l~V~rp~~~~~~ 551 (967)
.|+.|+|.....|..+
T Consensus 103 ~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 103 LGRTIRVDHVSNYKKP 118 (219)
T ss_pred cceeEEeeecccccCC
Confidence 9999999877766654
No 81
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.96 E-value=6.3e-10 Score=96.25 Aligned_cols=69 Identities=33% Similarity=0.452 Sum_probs=54.5
Q ss_pred EEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 466 LCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 466 LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
|||+|||+++|+++|+++|+.||.+..+. .+.+.. +..+|+|||+|.++++|..|+. ++|..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~------~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVR------LIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEE------EEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEE------EEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999998532221 112222 6678999999999999999999 777999999874
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.95 E-value=2.3e-09 Score=112.59 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=69.3
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..+|||+||++.+|+++|++||+.||.|.+|.|+++. ...|||||+|.+++++..|+ .|+|..|.++.|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 5789999999999999999999999999999999884 34689999999999999999 599999999999998764
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.95 E-value=2.5e-09 Score=112.36 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V 542 (967)
..+|||+||++.+|+++|++||+.||.+..+..+ .+ +..++||||+|.++++|..||.|||..|.|++|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~------~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~I 75 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEII------RS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCI 75 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEe------cC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEE
Confidence 4699999999999999999999999964443211 12 45678999999999999999999999999999999
Q ss_pred eCCCccccc
Q 002093 543 KRPKEFVEV 551 (967)
Q Consensus 543 ~rp~~~~~~ 551 (967)
.+..+|..+
T Consensus 76 t~~~~y~~~ 84 (243)
T PLN03121 76 TRWGQYEDE 84 (243)
T ss_pred EeCcccccC
Confidence 987777654
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.4e-09 Score=107.54 Aligned_cols=70 Identities=26% Similarity=0.348 Sum_probs=61.8
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
.++||||||+..+++.+|..+|..||. |..+++ -...|||||||.++-+|..|+. |||..|.|..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~------------lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGP------------LRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCc------------ceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceE
Confidence 579999999999999999999999994 344443 2568999999999999999999 99999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
+|..
T Consensus 78 rVE~ 81 (195)
T KOG0107|consen 78 RVEL 81 (195)
T ss_pred EEEe
Confidence 9973
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.91 E-value=2.2e-08 Score=112.83 Aligned_cols=170 Identities=9% Similarity=0.055 Sum_probs=126.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.....|-+.+||+++|+++|.+||+.++ |..+.+.+..+...|-|||+|.+.+++.+||+ .+-..++.+-|.|-.+.+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3456788899999999999999999876 55677777777789999999999999999997 787888999999977754
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEE-EEEecCCCCC
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKS-VNVVKYGDSN 730 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~-V~I~r~~~g~ 730 (967)
........ . ..+.+..+.-||.|..|... +..+||.+.|+..=.|.. |.++.+..+.
T Consensus 86 ~e~d~~~~------~----~g~~s~~~d~vVRLRGLPfs------------cte~dI~~FFaGL~Iv~~gi~l~~d~rgR 143 (510)
T KOG4211|consen 86 AEADWVMR------P----GGPNSSANDGVVRLRGLPFS------------CTEEDIVEFFAGLEIVPDGILLPMDQRGR 143 (510)
T ss_pred cccccccc------C----CCCCCCCCCceEEecCCCcc------------CcHHHHHHHhcCCcccccceeeeccCCCC
Confidence 33211100 0 01112245678888888652 333688999987765555 5577888888
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEE
Q 002093 731 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 766 (967)
Q Consensus 731 ~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~ 766 (967)
..|-+||+|.+.+.|++|++.- -..++-+.|.|-.
T Consensus 144 ~tGEAfVqF~sqe~ae~Al~rh-re~iGhRYIEvF~ 178 (510)
T KOG4211|consen 144 PTGEAFVQFESQESAEIALGRH-RENIGHRYIEVFR 178 (510)
T ss_pred cccceEEEecCHHHHHHHHHHH-HHhhccceEEeeh
Confidence 8999999999999999998754 3445555555533
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=1.9e-09 Score=108.77 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....|.|-||.+.++.++|+.+|++||.|-+|.|.+|.- .++|||||.|....+|+.|+++|+|..|+|+.|.|+.|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 457899999999999999999999999999999999964 469999999999999999999999999999999998884
Q ss_pred c
Q 002093 651 L 651 (967)
Q Consensus 651 ~ 651 (967)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=2.5e-10 Score=113.09 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=72.9
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
..-|||||||+.+|+.||...|++||.|..|.|++|+. .++||||+.|.+.-++..|+..|||..|.|+.|+|-....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 45699999999999999999999999999999999965 4699999999999999999999999999999999987644
Q ss_pred C
Q 002093 652 D 652 (967)
Q Consensus 652 ~ 652 (967)
.
T Consensus 115 Y 115 (219)
T KOG0126|consen 115 Y 115 (219)
T ss_pred c
Confidence 3
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=5.5e-09 Score=110.92 Aligned_cols=82 Identities=18% Similarity=0.322 Sum_probs=75.4
Q ss_pred CcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEE
Q 002093 568 GIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 645 (967)
Q Consensus 568 ~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~ 645 (967)
.++.++-.+|||+-|+..++|..|+..|++||+|+.|.|+.|. +.++|||||+|...-+...|.+..+|.+|+|+.|.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 3445678999999999999999999999999999999999994 56799999999999999999999999999999999
Q ss_pred EEEc
Q 002093 646 AVQA 649 (967)
Q Consensus 646 V~~a 649 (967)
|-+-
T Consensus 175 VDvE 178 (335)
T KOG0113|consen 175 VDVE 178 (335)
T ss_pred EEec
Confidence 9765
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.87 E-value=4.7e-08 Score=99.91 Aligned_cols=172 Identities=12% Similarity=0.201 Sum_probs=117.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec-CC--CCCCEEEEeecCcchHHHHHHHhCCCcc---CCeEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-ED--HEEPCAFIEYVDQLVTPKAIAGLNGLKV---GGQVLT 645 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d-~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~---~Gr~I~ 645 (967)
..-++|||.+||..+...+|..+|..|-..+.+.|... ++ ..+.+|||.|.+..+|..|++.|||..| .+..|.
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999877766655332 21 2467999999999999999999999998 578898
Q ss_pred EEEcccCCCcCCC-----CCC-CC---------------------------CC------CCCC-----------------
Q 002093 646 AVQAVLDGSIMDN-----SGN-PP---------------------------FH------GIPK----------------- 669 (967)
Q Consensus 646 V~~a~~~~~~~~~-----~~~-~~---------------------------~~------~i~~----------------- 669 (967)
+..|..+...... .+. .+ ++ .++.
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 8887554321100 000 00 00 0000
Q ss_pred -CCC--------CCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeC
Q 002093 670 -HAL--------PLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGN 740 (967)
Q Consensus 670 -~~~--------~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~ 740 (967)
... ..+.....+|+|.|+-.. ++ ++.|+++|..|--..-++|... . ....+|++|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~-----~~-------ed~l~~~~~~~~gf~~l~~~~~-~--g~~vaf~~~~ 256 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPN-----CT-------EDELKQLLSRYPGFHILKIRAR-G--GMPVAFADFE 256 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCC-----CC-------HHHHHHHHHhCCCceEEEEecC-C--CcceEeecHH
Confidence 000 001122346788887542 12 2568999999977666666432 2 2357999999
Q ss_pred CHHHHHHHHHHhCCCccC
Q 002093 741 ENTASAGVGQNLTNDETN 758 (967)
Q Consensus 741 ~~e~A~~Ai~~LnG~~~~ 758 (967)
+.+.|..||..|.|..|.
T Consensus 257 ~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 257 EIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHHhhcceec
Confidence 999999999999998764
No 90
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=6.8e-09 Score=90.31 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCeEEEE-EecC-CC--CCcceeEEEEeCCHHHHHHHHHHhCCCccCCCccee
Q 002093 703 EVLEDVRLECARFGSVKSVN-VVKY-GD--SNISTIQACEGNENTASAGVGQNLTNDETNEKGERL 764 (967)
Q Consensus 703 ei~eDIr~~f~kFG~V~~V~-I~r~-~~--g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v 764 (967)
+|.+.+.++|++||.|.+|. |+.+ .+ +..+|||||+|.+.++|.+|+..|||+.|.|+.+.+
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 44566777788999999995 5443 33 788999999999999999999999999999998764
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=98.85 E-value=3.4e-09 Score=118.01 Aligned_cols=75 Identities=19% Similarity=0.366 Sum_probs=64.0
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCH--HHHHHHHH-ccCceeecc
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTA--EDASAALC-CDGCSFSGS 538 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~--e~A~~Al~-lng~~l~Gr 538 (967)
...+||||||++.+|+++|..+|..||.+..+.. + ..+| +|||||+|.+. .++.+||. |||..+.|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEI-------p-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEF-------V-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-------e-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 3468999999999999999999999997554322 2 3345 99999999988 78999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|+|..++
T Consensus 79 ~LKVNKAK 86 (759)
T PLN03213 79 RLRLEKAK 86 (759)
T ss_pred eeEEeecc
Confidence 99998765
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=98.83 E-value=1.2e-08 Score=86.72 Aligned_cols=71 Identities=34% Similarity=0.471 Sum_probs=58.5
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEe
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~ 543 (967)
+|||+|||..+++++|+++|..||.+..+.. .... +.++|+|||+|.+.++|..|+. ++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~-------~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKI-------PKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEE-------ecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999995333211 1111 5567999999999999999999 99999999998873
No 93
>smart00360 RRM RNA recognition motif.
Probab=98.81 E-value=1.4e-08 Score=85.93 Aligned_cols=68 Identities=21% Similarity=0.447 Sum_probs=62.5
Q ss_pred EcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEE
Q 002093 579 IGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 646 (967)
Q Consensus 579 V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V 646 (967)
|+|||..+++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|..|+..|+|..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57899999999999999999999999988764 346899999999999999999999999999999887
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=6.4e-09 Score=98.44 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=73.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.-.|||.++....|+++|.+.|..||.|+.|.|..|..+ .+|||+|+|.+..+|++|+..|||..|.|+.|.|-|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 467999999999999999999999999999999888544 499999999999999999999999999999999999865
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
.++
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 443
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=1.3e-08 Score=84.30 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEe
Q 002093 708 VRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 767 (967)
Q Consensus 708 Ir~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~ 767 (967)
|..+|++||+|+.|.+.++. .+++||+|.+.++|..|+..|||..|.|+.+.|..+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46789999999999998865 588999999999999999999999999999888653
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=1.4e-08 Score=84.22 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=50.8
Q ss_pred HHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 591 VMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 591 L~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
|.++|++||.|..|.+.... .++|||+|.+.++|..|++.|||..|.|++|.|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987652 699999999999999999999999999999999885
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.79 E-value=2.9e-08 Score=84.74 Aligned_cols=73 Identities=25% Similarity=0.495 Sum_probs=66.6
Q ss_pred eEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 576 KIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 576 ~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
+|+|+|||..+++++|+++|..||.|..+.+..+.. ...|+|||+|.+.++|..|+..++|..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999987643 3589999999999999999999999999999998863
No 98
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.1e-08 Score=106.15 Aligned_cols=78 Identities=26% Similarity=0.314 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
...+|-|.||+.+++|++|++||.+||.+..+ .+.++..||.++|||||.|.+.++|.+||. |||.-+..-.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rv------ylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL 261 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRV------YLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL 261 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCcccee------EEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence 56789999999999999999999999974443 245888999999999999999999999999 99999988889
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
+|.+.
T Consensus 262 rvEws 266 (270)
T KOG0122|consen 262 RVEWS 266 (270)
T ss_pred EEEec
Confidence 88853
No 99
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.77 E-value=9.6e-08 Score=105.53 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=65.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.++|||.|||..+|++.|++-|..||.|..+.| ...+.++| .|.|.++++|..|+..|+|..+.|+.|.|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhh-hccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 467999999999999999999999999998887 33344455 89999999999999999999999999999873
No 100
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=7.9e-09 Score=106.87 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=65.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
....+||||||+..++.+.|+.+|++||++... ..|.|..++++||||||+|.+.+.|+.|++-..-.|.|+..
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~ea------vvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEA------VVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEE------EEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 345689999999999999999999999975442 25678899999999999999999999999966667788776
Q ss_pred EEe
Q 002093 541 KIK 543 (967)
Q Consensus 541 ~V~ 543 (967)
.+.
T Consensus 84 Ncn 86 (247)
T KOG0149|consen 84 NCN 86 (247)
T ss_pred ccc
Confidence 554
No 101
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.8e-08 Score=104.26 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=69.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
-++||||||++.+..+.|+..|++||.|....|+.|+. .++||+||.|.+.++|.+|++.-| -.|+||...|..|..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 46899999999999999999999999999999999965 579999999999999999998554 678999988888765
No 102
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.7e-08 Score=107.29 Aligned_cols=78 Identities=24% Similarity=0.343 Sum_probs=71.2
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.+||||+-|+++++|..|+..|+.||.|..|. +|.+..+|.++|||||+|.+.-+...|+. .+|++|.|+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir------lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR------LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEE------EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 36789999999999999999999999999865553 45788999999999999999999999999 999999999
Q ss_pred eeEEe
Q 002093 539 ILKIK 543 (967)
Q Consensus 539 ~l~V~ 543 (967)
.|.|-
T Consensus 172 ri~VD 176 (335)
T KOG0113|consen 172 RILVD 176 (335)
T ss_pred EEEEE
Confidence 99885
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=1.1e-08 Score=96.76 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=67.9
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
-.|||.+++..+||++|.+.|..||++.+|. +-++..+|-.+|||+|+|.+.++|..|+. |||..|.|++|.|
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNih------LNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIH------LNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhccccccee------eccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 3699999999999999999999999866542 22778899999999999999999999999 9999999999999
Q ss_pred eC
Q 002093 543 KR 544 (967)
Q Consensus 543 ~r 544 (967)
.|
T Consensus 147 Dw 148 (170)
T KOG0130|consen 147 DW 148 (170)
T ss_pred EE
Confidence 85
No 104
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.71 E-value=2e-08 Score=101.48 Aligned_cols=78 Identities=27% Similarity=0.337 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
....|-|-||.+-+|.++|+.+|+.||.+..|. +-.+..|..++|||||-|.+..+|+.||+ |+|.+|.|+.|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVy------IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVY------IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCccccee------cccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 345899999999999999999999999755542 22677889999999999999999999999 99999999999
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
.|+.+
T Consensus 86 rVq~a 90 (256)
T KOG4207|consen 86 RVQMA 90 (256)
T ss_pred eehhh
Confidence 99843
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=98.71 E-value=3.2e-08 Score=86.12 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=51.4
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeecC----CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEE
Q 002093 588 SKMVMEIVC----AFGPLKAYH-FEVNE----DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 646 (967)
Q Consensus 588 eedL~e~Fs----k~G~V~~v~-l~~d~----~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V 646 (967)
+++|+++|+ +||.|..|. |+.+. +.++|||||+|.+.++|.+|+..|||.++.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467777777 999999985 65554 456999999999999999999999999999999986
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.9e-08 Score=102.24 Aligned_cols=83 Identities=16% Similarity=0.338 Sum_probs=76.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++||||+|...+++.-|...|-+||.|.+|.++.|-. ..+|||||+|.-.++|.+||..||+..|.|+.|+|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 468999999999999999999999999999999998843 469999999999999999999999999999999999998
Q ss_pred cCCCc
Q 002093 651 LDGSI 655 (967)
Q Consensus 651 ~~~~~ 655 (967)
|....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86654
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.67 E-value=2.5e-08 Score=114.76 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=72.4
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
+.|||||||+.+++++|..+|+..|.+..+. .+.|..+|..+|||||+|.+.++|..|++ |||..+.|++|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~------~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFR------LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceee------ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 7899999999999999999999998766553 44788999999999999999999999999 9999999999999
Q ss_pred eCCCccc
Q 002093 543 KRPKEFV 549 (967)
Q Consensus 543 ~rp~~~~ 549 (967)
.++....
T Consensus 93 ~~~~~~~ 99 (435)
T KOG0108|consen 93 NYASNRK 99 (435)
T ss_pred ecccccc
Confidence 9876544
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.67 E-value=3.7e-08 Score=113.34 Aligned_cols=79 Identities=23% Similarity=0.424 Sum_probs=73.7
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
..|||||||+.+++++|.++|+..|.|.+++++.|.. ..+||||++|.+.++|..|++.|||..|.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8899999999999999999999999999999998854 46999999999999999999999999999999999998544
Q ss_pred C
Q 002093 653 G 653 (967)
Q Consensus 653 ~ 653 (967)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 109
>smart00360 RRM RNA recognition motif.
Probab=98.66 E-value=4.1e-08 Score=82.97 Aligned_cols=70 Identities=37% Similarity=0.465 Sum_probs=57.0
Q ss_pred EeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEe
Q 002093 468 VENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (967)
Q Consensus 468 VgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~ 543 (967)
|+|||..+++++|+++|+.||.+..+.. .....++.++|||||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i------~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRL------VRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEE------EeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999995433211 1222246778999999999999999999 99999999998873
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.6e-08 Score=102.80 Aligned_cols=79 Identities=28% Similarity=0.320 Sum_probs=69.6
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++||||+|...+||.-|...|-+||-+..|. .-++-...+++|||||+|.-.|+|..||. ||+..|.|+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIq------iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr 80 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQ------IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR 80 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcc------cccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence 34578999999999999999999999999644432 22677889999999999999999999999 999999999
Q ss_pred eeEEeC
Q 002093 539 ILKIKR 544 (967)
Q Consensus 539 ~l~V~r 544 (967)
.|+|..
T Consensus 81 tirVN~ 86 (298)
T KOG0111|consen 81 TIRVNL 86 (298)
T ss_pred eEEEee
Confidence 999984
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=3.6e-09 Score=107.68 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=113.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...+||||+||-..++|+-|.++|-+.|+++.+ .|-+...+..+ ||||.|.+.-....|++ +||..+.+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv-------~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKV-------GIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEE-------eCCCCccCCCc-eeeeecccccchhhhhhhcccchhccch
Confidence 456899999999999999999999888853332 12233334455 99999999999999999 9999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcC----CCcccCHHHHHHHHHhcCCeeEEEEeecCC-CCC
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGG----ISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEE 614 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~n----Lp~~~teedL~e~Fsk~G~V~~v~l~~d~~-~sk 614 (967)
+.|.. +.|+ |...++++.+...|+..|++..+++..+.+ .++
T Consensus 79 ~q~~~---------------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnr 125 (267)
T KOG4454|consen 79 EQRTL---------------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNR 125 (267)
T ss_pred hhccc---------------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCcc
Confidence 98862 1122 456678889999999999999999987743 468
Q ss_pred CEEEEeecCcchHHHHHHHhCCCccCCeEEE
Q 002093 615 PCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 645 (967)
Q Consensus 615 G~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~ 645 (967)
.++|+.+.-......|+....|..+.-+++.
T Consensus 126 n~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 126 NFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred CccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 8999999999999999987777665444433
No 112
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.63 E-value=9e-08 Score=81.69 Aligned_cols=72 Identities=35% Similarity=0.467 Sum_probs=58.6
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEe
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~ 543 (967)
+|||+|||+.+++++|.++|..||.+..+. +.....+..+|+|||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~-------~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVR-------IVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEE-------EeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999998533321 1111122458999999999999999999 99999999999885
No 113
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=8.2e-08 Score=87.26 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=61.9
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee---cCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI---QREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~---~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
.+-|||.|||+.+|.+++.++|-.||. |..+.+ ...+|.|||.|.+..+|.+|+. |+|+.+.++
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~------------IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGT------------IRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccc------------eEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 567999999999999999999999994 333333 3457999999999999999999 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
.|.|..+
T Consensus 86 yl~vlyy 92 (124)
T KOG0114|consen 86 YLVVLYY 92 (124)
T ss_pred eEEEEec
Confidence 9999854
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.59 E-value=6.5e-08 Score=105.41 Aligned_cols=184 Identities=16% Similarity=0.196 Sum_probs=124.0
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEEeC
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKR 544 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V~r 544 (967)
.|-+++||+++|+.|+.+||-+--.+.+ .+++ .+.+..-.|+..|-|||.|..+++|..||.-|...++-+-|.+-|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~--g~eg-vLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTG--GTEG-VLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccC--Cccc-eEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5778899999999999999953222221 1111 133444468889999999999999999999777777666666544
Q ss_pred CCcccccc--cc-ccccccc--ccCCcC----Cccc--CCCceEEEcCCCcccCHHHHHHHHHhcCCe-eE--EEEeec-
Q 002093 545 PKEFVEVA--SG-EAEKSVA--SVDSVS----GIVK--DSPHKIFIGGISRTLSSKMVMEIVCAFGPL-KA--YHFEVN- 609 (967)
Q Consensus 545 p~~~~~~~--~~-~~~~~~~--~~~~~~----~~~~--~~~~~L~V~nLp~~~teedL~e~Fsk~G~V-~~--v~l~~d- 609 (967)
.+....++ .. ..+.... .....+ ..++ ....+|-+.+||+..+.++|.+||..|..- .. |.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 22111000 00 0000000 000011 1111 125789999999999999999999988653 22 566555
Q ss_pred CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 610 EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 610 ~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.+...|-|||+|.+.+.|..|.+..+.....++-|.|-.++.
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 345589999999999999999998888888899999987643
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=7.8e-07 Score=101.30 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=107.6
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCc---EEEEEEcCHHHHHHHHHccCceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG---QAFVEFLTAEDASAALCCDGCSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG---~aFVeF~~~e~A~~Al~lng~~l~ 536 (967)
..-.++||||+||.+++|++|...|-.||.+.- .++. .......-..+| |+|+.|.+...+..-|. ...+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V--dWP~--k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~--aC~~~ 329 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKV--DWPG--KANSRGRAPPKGSYGYVFLVFEDERSVQSLLS--ACSEG 329 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEe--ecCC--CccccccCCCCCcccEEEEEecchHHHHHHHH--HHhhc
Confidence 355789999999999999999999999995221 2221 112222234566 99999999988776554 11111
Q ss_pred cc--eeEEeCCCcccccccccccccc--cccCC--cCCcccCCCceEEEcCCCcccCHHHHHHHHH-hcCCeeEEEEeec
Q 002093 537 GS--ILKIKRPKEFVEVASGEAEKSV--ASVDS--VSGIVKDSPHKIFIGGISRTLSSKMVMEIVC-AFGPLKAYHFEVN 609 (967)
Q Consensus 537 Gr--~l~V~rp~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~L~V~nLp~~~teedL~e~Fs-k~G~V~~v~l~~d 609 (967)
.. -|.|.-+...... .....+ ..... ......++..+||||+||.-++-++|-.+|+ -||.|..+-|..|
T Consensus 330 ~~~~yf~vss~~~k~k~---VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD 406 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKE---VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD 406 (520)
T ss_pred ccceEEEEecCcccccc---eeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC
Confidence 11 1122211111000 000000 00110 1233456789999999999999999999999 6999999999777
Q ss_pred CCC--CCCEEEEeecCcchHHHHHH
Q 002093 610 EDH--EEPCAFIEYVDQLVTPKAIA 632 (967)
Q Consensus 610 ~~~--skG~aFVeF~~~e~A~~Al~ 632 (967)
+.- .+|-|=|.|.+..+-.+||.
T Consensus 407 ~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 407 PKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cccCCCCCcceeeecccHHHHHHHh
Confidence 432 49999999999999999986
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=1.8e-07 Score=111.79 Aligned_cols=161 Identities=20% Similarity=0.242 Sum_probs=126.6
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
....+++||+|||+..+++.+|+..|..+|.+.. | -|..-.++...-||||.|.+...|-.|.. +.+..|..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~---V----DiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEE---V----DIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccc---c----ccccCCCCcccchhhhhhhccccCcccchhhcCCcccc
Confidence 4567889999999999999999999999996333 2 12222356667899999999999999988 88876654
Q ss_pred ceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEE
Q 002093 538 SILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCA 617 (967)
Q Consensus 538 r~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~a 617 (967)
-.++++. + +......+.+++++|..++....|...|..||.|..|.+-. +..|+
T Consensus 441 g~~r~gl---------G-------------~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq~ya 494 (975)
T KOG0112|consen 441 GTHRIGL---------G-------------QPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQPYA 494 (975)
T ss_pred Ccccccc---------c-------------ccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CCcce
Confidence 4444441 0 00122367899999999999999999999999999877633 46799
Q ss_pred EEeecCcchHHHHHHHhCCCccCC--eEEEEEEcccC
Q 002093 618 FIEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVLD 652 (967)
Q Consensus 618 FVeF~~~e~A~~Al~~LnG~~~~G--r~I~V~~a~~~ 652 (967)
||+|.+...++.|+..|-|..|+| +.|.|-++.+.
T Consensus 495 yi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 495 YIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred eeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 999999999999999999999976 45888887543
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.41 E-value=3.7e-06 Score=97.82 Aligned_cols=182 Identities=8% Similarity=0.030 Sum_probs=127.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...+.+-+.+.+++..+.++++||... .+..+. +.++...+...|.++|+|..+.++.+|+.-|...+-.+.+
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~----~~~~~~---l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~ 381 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR----NAQSTD---LSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPF 381 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc----cccccc---hhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcce
Confidence 445566678999999999999998332 122221 2233333444899999999999999999999999999999
Q ss_pred EEeCCCcccccccc-----cc----ccccc----------ccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCe
Q 002093 541 KIKRPKEFVEVASG-----EA----EKSVA----------SVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPL 601 (967)
Q Consensus 541 ~V~rp~~~~~~~~~-----~~----~~~~~----------~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V 601 (967)
.|.-+.+..-..+. .. ..+.. ..+...........+|||.+||..+++.++.++|.....|
T Consensus 382 q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~V 461 (944)
T KOG4307|consen 382 QTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAV 461 (944)
T ss_pred eecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhh
Confidence 88765532211000 00 00000 0000001112345799999999999999999999998888
Q ss_pred eE-EEEeec-CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 602 KA-YHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 602 ~~-v~l~~d-~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
++ |.|... ++.-.+.|||.|..++++..|+..-+-+.++.+.|.|...
T Consensus 462 ed~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 462 EDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred hheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 77 666444 3445899999999999999998877888889999999654
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.40 E-value=7.5e-07 Score=93.08 Aligned_cols=133 Identities=12% Similarity=0.195 Sum_probs=104.5
Q ss_pred eeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcC
Q 002093 503 IGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGG 581 (967)
Q Consensus 503 ~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~n 581 (967)
+...-+.-.+++|+.|.....-.++-. -++..+.-.++++...+.|..+... .-.....+||.|.
T Consensus 132 v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~--------------ew~~~DfRIfcgd 197 (290)
T KOG0226|consen 132 VRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLA--------------EWDEDDFRIFCGD 197 (290)
T ss_pred hhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccc--------------cCccccceeeccc
Confidence 333445668999999998877777766 6666666666777765555443110 0123457899999
Q ss_pred CCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 582 ISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 582 Lp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
|...++++-|-..|.+|-.....++++++ +.++||+||-|.++.++..|+..|+|..++.++|++..+
T Consensus 198 lgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 198 LGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 99999999999999999888778888885 457999999999999999999999999999999987654
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.34 E-value=1.9e-07 Score=102.25 Aligned_cols=174 Identities=12% Similarity=0.081 Sum_probs=122.6
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEEeC
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKR 544 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V~r 544 (967)
.|.|.||.+++|.++++.||..+|+|..+...+ .+-++.+......|||.|.+..++..|..|.+++|-|+.|.|..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp---~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYP---NVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccC---CCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 789999999999999999999999866655443 24555556667899999999999999999999999999988864
Q ss_pred CCccccc--------c--ccc---cccc--------ccccCCcCCc---------------ccCCCceEEEcCCCcccCH
Q 002093 545 PKEFVEV--------A--SGE---AEKS--------VASVDSVSGI---------------VKDSPHKIFIGGISRTLSS 588 (967)
Q Consensus 545 p~~~~~~--------~--~~~---~~~~--------~~~~~~~~~~---------------~~~~~~~L~V~nLp~~~te 588 (967)
..+-..+ . ... ..+. +...+..++. +.....+++|++|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 3221111 0 000 0000 0000000000 0011256899999999999
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEE
Q 002093 589 KMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 644 (967)
Q Consensus 589 edL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I 644 (967)
.++.+.|..+|.|....+... ....+|-|+|....+...|+. ++|+.|.-+..
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask--~~s~~c~~sf~~qts~~halr-~~gre~k~qhs 218 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASK--SRSSSCSHSFRKQTSSKHALR-SHGRERKRQHS 218 (479)
T ss_pred hhhhhhhhhcchhhhhhhhcc--CCCcchhhhHhhhhhHHHHHH-hcchhhhhhhh
Confidence 999999999999987766332 235678899999999999996 78888873333
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=5.9e-08 Score=115.43 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=122.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
+...++||.||++.+.+.+|...|..+|. +..++ .++....++-+|+|||+|..++++.+|+.++-..+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~---~e~vq---i~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGT---IEVVQ---IVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccch---hhhHH---HHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---
Confidence 45678999999999999999999999884 22222 2245566788999999999999999999965554444
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFI 619 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFV 619 (967)
...|||.|.|+..|.+.|+.+|.++|.+.+++++... +..+|.|||
T Consensus 736 ---------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v 782 (881)
T KOG0128|consen 736 ---------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARV 782 (881)
T ss_pred ---------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceec
Confidence 2357889999999999999999999999999887764 356999999
Q ss_pred eecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 620 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.|.+..++.+++....++.+.-+.+.|..+.|
T Consensus 783 ~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 783 DYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999998888888777777766544
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=8e-08 Score=114.33 Aligned_cols=239 Identities=15% Similarity=0.113 Sum_probs=165.9
Q ss_pred CCCEEEEeCCCCcchHH-HHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEK-ALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~Tee-dL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
..+.+++.|+.+..... ..+..|..+|.+..+.... .-..-....++++++.....+..|....+..+.++.+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~------~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~ 643 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPK------RGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSA 643 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCcc------ccccccccchhhhhhccccchhhcccccccccCCccc
Confidence 34567888888877665 5667777776432221111 0111112237899999999999999988888888888
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEe--ecCCCCCCEEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFE--VNEDHEEPCAF 618 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~--~d~~~skG~aF 618 (967)
.|.. ..+......... .........++||.||+..+.+.+|...|..+|.+..+++. .+.+.-+|+||
T Consensus 644 av~~---------ad~~~~~~~~kv-s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y 713 (881)
T KOG0128|consen 644 AVGL---------ADAEEKEENFKV-SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAY 713 (881)
T ss_pred cCCC---------CCchhhhhccCc-CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccccccee
Confidence 7762 111111111111 00111123578999999999999999999999998887665 33444589999
Q ss_pred EeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCCh
Q 002093 619 IEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSE 698 (967)
Q Consensus 619 VeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~ 698 (967)
|+|..++.+.+|+....+..++...+.|. +.+++
T Consensus 714 ~~F~~~~~~~aaV~f~d~~~~gK~~v~i~-------------g~pf~--------------------------------- 747 (881)
T KOG0128|consen 714 VEFLKPEHAGAAVAFRDSCFFGKISVAIS-------------GPPFQ--------------------------------- 747 (881)
T ss_pred eEeecCCchhhhhhhhhhhhhhhhhhhee-------------CCCCC---------------------------------
Confidence 99999999999998666665552222210 11111
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEE
Q 002093 699 LEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 766 (967)
Q Consensus 699 ~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~ 766 (967)
.+.+.++.+|.++|++.++.++....|..+|.+||.|.+..+|..+...+.+..+..+.+.+..
T Consensus 748 ----gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 748 ----GTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred ----CchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 1124578899999999999999888999999999999999999999888888877777766654
No 122
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.25 E-value=4.6e-07 Score=92.65 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=120.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
....+|||+|+...++++-|.++|-..|+|..|.|..+.+....||||.|.+...+.-|++.|||..+.++.|.|+.-+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 34679999999999999999999999999999999887665555999999999999999999999999999998866532
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCc
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNI 731 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~ 731 (967)
+... .| +..--++| +..+|..-|.++-+.++.+..|..
T Consensus 87 ~sha------------------------------------pl---d~r~~~ei---~~~v~s~a~p~~~~R~~~~~d~rn 124 (267)
T KOG4454|consen 87 NSHA------------------------------------PL---DERVTEEI---LYEVFSQAGPIEGVRIPTDNDGRN 124 (267)
T ss_pred CCcc------------------------------------hh---hhhcchhh---heeeecccCCCCCccccccccCCc
Confidence 2110 00 00000122 345577789999999999988888
Q ss_pred ceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEE
Q 002093 732 STIQACEGNENTASAGVGQNLTNDETNEKGERLEE 766 (967)
Q Consensus 732 ~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~ 766 (967)
..++|+.|-.....=.|+..-.|.++.-+.+.++.
T Consensus 125 rn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~gg 159 (267)
T KOG4454|consen 125 RNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIGG 159 (267)
T ss_pred cCccchhhhhhhcCcHHhhhhcccCcCCCCccccc
Confidence 88999999888888888888888887777665544
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.5e-06 Score=94.25 Aligned_cols=80 Identities=13% Similarity=0.200 Sum_probs=73.4
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
.++.+.|||--|.+.+++++|.-+|+.||+|..|.|++|..+ +--||||+|.+.+++.+|.-.|++..|..+.|.|-+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 445689999999999999999999999999999999999544 577999999999999999999999999999999988
Q ss_pred cc
Q 002093 649 AV 650 (967)
Q Consensus 649 a~ 650 (967)
+.
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 73
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.21 E-value=1.4e-06 Score=96.10 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=128.5
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCc-eeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGC-SFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~-~l~Gr~l 540 (967)
...++|+|++...+.+.++..++...|...... .........++||++|.|...+.+..||++.+. .+.+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~------~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDAR------SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccch------hhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 456899999999999999999998888433211 112234577899999999999999999997774 5555444
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEE-EcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIF-IGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCA 617 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~a 617 (967)
..-..+..... ..+...........++| |++|+..+++++|+..|..+|.|..+++..+.. ..+||+
T Consensus 161 ~~dl~~~~~~~----------~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a 230 (285)
T KOG4210|consen 161 EKDLNTRRGLR----------PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFA 230 (285)
T ss_pred cCccccccccc----------ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhh
Confidence 33221111100 00000001112234555 999999999999999999999999999877754 359999
Q ss_pred EEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 618 FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 618 FVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
||.|.+...+.+++.. +...++++++.+.+..+...
T Consensus 231 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 231 YVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 9999999999999987 88999999999988876544
No 125
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.19 E-value=2.5e-06 Score=100.64 Aligned_cols=74 Identities=23% Similarity=0.436 Sum_probs=70.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++||||+|+..+++.+|..+|+.||.|.+|.++. .+|||||.+....+|.+|+..|....+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 47899999999999999999999999999998876 499999999999999999999999999999999999954
No 126
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.17 E-value=8.5e-07 Score=93.26 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=42.8
Q ss_pred CCCCcccccceEEEEecCHHHHHHHHHHhhccccCCceEEEEecChhhHH
Q 002093 913 PNQGHIFEPGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYR 962 (967)
Q Consensus 913 ~~~~~v~~~G~VyVkF~s~eaA~~A~~aLhGR~FagR~I~A~yv~~~~Y~ 962 (967)
|+....--.|||||+|...|+|++|++.||||||+|+.|+|.++|..-+.
T Consensus 102 c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 102 CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 55522222699999999999999999999999999999999999987664
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.14 E-value=5.1e-06 Score=84.86 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=71.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhc-CCeeEEEEeec--CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAF-GPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~-G~V~~v~l~~d--~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....++|..+|..+-+..+..+|.+| |.|..+++-++ ++.++|||||+|.+.+.|.-|-+.||++.|.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 35678999999999999999999998 77777888777 4567999999999999999999999999999999999888
Q ss_pred ccC
Q 002093 650 VLD 652 (967)
Q Consensus 650 ~~~ 652 (967)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 766
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.13 E-value=2.7e-06 Score=90.22 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=69.8
Q ss_pred CCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCC--CcceeEEEEeCCHHHHHHHHHH
Q 002093 674 LLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDS--NISTIQACEGNENTASAGVGQN 751 (967)
Q Consensus 674 ~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g--~~~G~gFVeF~~~e~A~~Ai~~ 751 (967)
....|++||.|.|||.+.+. + +++.+.++++|++||+|.+|.|...+.- .----.||+|...++|.+|+--
T Consensus 276 Il~~ptkvlllrnmVg~gev---d----~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vd 348 (378)
T KOG1996|consen 276 ILKCPTKVLLLRNMVGAGEV---D----EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVD 348 (378)
T ss_pred HHhcchHHHHhhhhcCcccc---c----HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHh
Confidence 34678999999999998876 3 3566778999999999999999876321 1122479999999999999999
Q ss_pred hCCCccCCCcceeEE
Q 002093 752 LTNDETNEKGERLEE 766 (967)
Q Consensus 752 LnG~~~~~r~~~v~~ 766 (967)
|||+.|+|+...-..
T Consensus 349 lnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 349 LNGRYFGGRVVSACF 363 (378)
T ss_pred cCCceecceeeehee
Confidence 999999999876543
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.10 E-value=3.6e-06 Score=85.97 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=63.9
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
..-+||+.||..+.+.+|..+|.+||- -+..+. .-.+..||.++|||||+|.+++.|..|-+ ||+..|.|+-|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g--~v~r~r---lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGG--TVTRFR---LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCC--eeEEEE---eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 446899999999999999999999961 111221 22566899999999999999999999999 999999999998
Q ss_pred Ee
Q 002093 542 IK 543 (967)
Q Consensus 542 V~ 543 (967)
+.
T Consensus 124 c~ 125 (214)
T KOG4208|consen 124 CH 125 (214)
T ss_pred eE
Confidence 87
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=3e-06 Score=101.65 Aligned_cols=158 Identities=14% Similarity=0.179 Sum_probs=120.2
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec-CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d-~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...+||++||+..+++.+|+..|..+|.|..|.|-.. .+...-|+||.|.+...+..|+..+.|..|+.-.+.+.+..+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 4689999999999999999999999999999988554 234566999999999999999999998877655555544432
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCc
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNI 731 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~ 731 (967)
. ..+++-+++..+.....+ .-+..+|..||.|..|.+-. |
T Consensus 451 k-----------------------st~ttr~~sgglg~w~p~------------~~l~r~fd~fGpir~Idy~h---g-- 490 (975)
T KOG0112|consen 451 K-----------------------STPTTRLQSGGLGPWSPV------------SRLNREFDRFGPIRIIDYRH---G-- 490 (975)
T ss_pred c-----------------------cccceeeccCCCCCCChH------------HHHHHHhhccCcceeeeccc---C--
Confidence 1 123344444444321111 24678899999999877754 2
Q ss_pred ceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeecc
Q 002093 732 STIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDH 770 (967)
Q Consensus 732 ~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~~ 770 (967)
--|+||+|.+...|+.|+..|-|..|++-...+...+.+
T Consensus 491 q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 491 QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred CcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 347999999999999999999999999988776555443
No 131
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.09 E-value=9.9e-07 Score=93.47 Aligned_cols=61 Identities=30% Similarity=0.494 Sum_probs=49.8
Q ss_pred ccCCCCCCCCCCC-Cc-----ccc--------cceEEEEecCHHHHHHHHHHhhccccCCceEEEEecChhhHHh
Q 002093 903 VENGDNENQDPNQ-GH-----IFE--------PGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRA 963 (967)
Q Consensus 903 ~e~~~~~~~e~~~-~~-----v~~--------~G~VyVkF~s~eaA~~A~~aLhGR~FagR~I~A~yv~~~~Y~~ 963 (967)
.|.++++++||.+ +. ||. +=-|||+|.+++.|.+|+--||||||+||+|.|.|.-+..|..
T Consensus 297 ~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 297 EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSN 371 (378)
T ss_pred HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhh
Confidence 4556677788876 22 221 3458999999999999999999999999999999999988864
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.08 E-value=1.5e-05 Score=87.02 Aligned_cols=75 Identities=19% Similarity=0.346 Sum_probs=66.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHh-CCCccCCeEEEEEEccc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~L-nG~~~~Gr~I~V~~a~~ 651 (967)
...+|||++|-..+++.+|++.|.+||.|+.|.+.. .+++|||+|.+.++|..|...+ +...+.|+.|+|.|..+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 347899999999999999999999999999998876 4789999999999999777554 55678999999999977
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.07 E-value=8.3e-06 Score=88.88 Aligned_cols=77 Identities=25% Similarity=0.263 Sum_probs=65.8
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH--ccCceee
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC--CDGCSFS 536 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~--lng~~l~ 536 (967)
.+....+||||+|-..++|.+|++.|.+||. |..+..-..++.|||+|.+-+.|+.|.+ +|...+.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGe------------irsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~ 291 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGE------------IRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVIN 291 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCC------------eeeEEeecccccceeeehhhHHHHHHHHhhcceeeec
Confidence 3456679999999999999999999999994 3444455568899999999999999999 8989999
Q ss_pred cceeEEeCCCc
Q 002093 537 GSILKIKRPKE 547 (967)
Q Consensus 537 Gr~l~V~rp~~ 547 (967)
|+.|+|.|...
T Consensus 292 G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIKWGRP 302 (377)
T ss_pred ceEEEEEeCCC
Confidence 99999987544
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.06 E-value=1e-05 Score=92.03 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=70.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...+.|||.+|...+-..+|++||+.||+++|... |.+..+...+.|+||++.+.++|.+||. |+...|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKV------VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrm 476 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKV------VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRM 476 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceee------eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhccee
Confidence 45688999999999999999999999998877533 3445555567899999999999999999 9999999999
Q ss_pred eEEeCCCccc
Q 002093 540 LKIKRPKEFV 549 (967)
Q Consensus 540 l~V~rp~~~~ 549 (967)
|.|.++++-+
T Consensus 477 ISVEkaKNEp 486 (940)
T KOG4661|consen 477 ISVEKAKNEP 486 (940)
T ss_pred eeeeecccCc
Confidence 9999776544
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.02 E-value=6.6e-05 Score=87.80 Aligned_cols=178 Identities=9% Similarity=-0.061 Sum_probs=114.1
Q ss_pred EEcCCCcccCHHHHHHHHHhcCCeeEEEEeec--CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002093 578 FIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 655 (967)
Q Consensus 578 ~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d--~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~ 655 (967)
-+.+++++....++++||.-.- |.++.|..+ .....|.+||+|....++++|+. -|...+-.+.|.|..+....-.
T Consensus 315 ~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~~ 392 (944)
T KOG4307|consen 315 NYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGRN 392 (944)
T ss_pred eecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCccccc
Confidence 3457778888889999985421 223333333 22348999999999999999986 4556667777777554211100
Q ss_pred C----------CCCCC-CCC-CCC------CCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCC
Q 002093 656 M----------DNSGN-PPF-HGI------PKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGS 717 (967)
Q Consensus 656 ~----------~~~~~-~~~-~~i------~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~ 717 (967)
. ...+. ..- .+. +....+.....+.||+|..+.....+ .++...|..--.
T Consensus 393 ~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~------------~~~v~~f~~~~~ 460 (944)
T KOG4307|consen 393 GAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPI------------VPPVNKFMGAAA 460 (944)
T ss_pred cCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccc------------cchhhhhhhhhh
Confidence 0 00000 000 000 11112233455789999988665444 256666776666
Q ss_pred eEE-EEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 718 VKS-VNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 718 V~~-V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
|+. |.|.+-+++...+.|||.|...+++..|...-.-..++-+.|.|....+
T Consensus 461 Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 461 VEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred hhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 776 7777778888999999999999999999887777777777777755544
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=1.2e-05 Score=92.63 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=109.3
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|+|-|||..+++++|..+|..||++.++.. +....|..||+|.|.-+|+.|+. ||+..|.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----------TPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 356789999999999999999999999998666422 33468999999999999999999 999999999
Q ss_pred eeEEeCCCcccccccccc-cccccccC-CcCCcccCC--CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCC
Q 002093 539 ILKIKRPKEFVEVASGEA-EKSVASVD-SVSGIVKDS--PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEE 614 (967)
Q Consensus 539 ~l~V~rp~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~--~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~sk 614 (967)
.|+ ++........-.. ..-+.... .....++.. ...+|+. |++..+..-+...|+-+|.+.. +. ...-.
T Consensus 141 ~~k--~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~---~~~~~ 213 (549)
T KOG4660|consen 141 RIK--RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE---TPLLN 213 (549)
T ss_pred hhc--CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc---ccchh
Confidence 988 3221111000000 00000000 000011111 2334443 8888887666666777777654 32 11112
Q ss_pred CEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 615 PCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 615 G~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
-.-|++|.+..++..++..+ |..+.+....+..+.+
T Consensus 214 hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 214 HQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 36788888888886666533 6666666655555433
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.01 E-value=1e-05 Score=92.08 Aligned_cols=78 Identities=14% Similarity=0.266 Sum_probs=71.1
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
..+|+|.+|...+.-.+|+.+|++||.|.-..|+.+..+ .+.|+||++.+.++|.+||..||-..|.|+.|.|..+..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 478999999999999999999999999999999887432 388999999999999999999999999999999998854
No 138
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.4e-05 Score=86.88 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=71.1
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
.++...|||--|.+-+|.++|.-+|+.||.+.+.. .|.+..+|.+..||||+|.+.+++++|+- |++..|.++
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sce------VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCE------VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeee------EEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 45678999999999999999999999999866653 45788999999999999999999999999 999999999
Q ss_pred eeEEe
Q 002093 539 ILKIK 543 (967)
Q Consensus 539 ~l~V~ 543 (967)
.|.|.
T Consensus 310 RIHVD 314 (479)
T KOG0415|consen 310 RIHVD 314 (479)
T ss_pred eEEee
Confidence 99996
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.83 E-value=1.1e-05 Score=88.89 Aligned_cols=16 Identities=63% Similarity=0.773 Sum_probs=6.9
Q ss_pred CCccCCCCcCCCCCcc
Q 002093 292 REREDRNRRSLSLSPR 307 (967)
Q Consensus 292 Rdr~~rr~RSrsr~~R 307 (967)
+++++||+||++++||
T Consensus 352 rerrrRRSrSrsRspR 367 (479)
T KOG4676|consen 352 RERRRRRSRSRSRSPR 367 (479)
T ss_pred hhhhhhhccccccCCC
Confidence 3333444444444443
No 140
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00029 Score=80.91 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=103.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-----CCCC---EEEEeecCcchHHHHHHHhCCCccCCeEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-----HEEP---CAFIEYVDQLVTPKAIAGLNGLKVGGQVL 644 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-----~skG---~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I 644 (967)
-.++||||+||..++|+.|...|..||.+. |.+....+ ..+| |+|+-|.+...+..-+.+. .++...+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcccce
Confidence 357899999999999999999999999874 55542211 2366 9999999988877655433 2344444
Q ss_pred EEEEcccCCCcCCCC------CCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCe
Q 002093 645 TAVQAVLDGSIMDNS------GNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSV 718 (967)
Q Consensus 645 ~V~~a~~~~~~~~~~------~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V 718 (967)
.++...+.-...... ....+. . .. ...-.|.++++|..+.-+ |+-+++..|++|+ ||.|
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv-~-d~--sq~lDprrTVFVGgvprp-----l~A~eLA~imd~l------yGgV 398 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFV-L-DH--NQPIDPRRTVFVGGLPRP-----LTAEELAMIMEDL------FGGV 398 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhh-h-cc--CcccCccceEEecCCCCc-----chHHHHHHHHHHh------cCce
Confidence 443333332221100 000000 0 00 011246789999888764 2445556666554 9999
Q ss_pred EEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHH
Q 002093 719 KSVNVVKY-GDSNISTIQACEGNENTASAGVGQN 751 (967)
Q Consensus 719 ~~V~I~r~-~~g~~~G~gFVeF~~~e~A~~Ai~~ 751 (967)
..|-|..| .-..-+|-|=|+|.+..+=.+||.+
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99999988 4566677777999999988888653
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=1.6e-05 Score=91.59 Aligned_cols=70 Identities=19% Similarity=0.383 Sum_probs=64.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 645 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~ 645 (967)
...+|+|-|||..+++++|..+|+.||.|+.|+.-.. ..|.+||+|.++-+|..|+++|++..+.|+.|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4678999999999999999999999999998765433 689999999999999999999999999999998
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.72 E-value=3.6e-06 Score=93.05 Aligned_cols=151 Identities=20% Similarity=0.234 Sum_probs=117.5
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccC-ceeecceeE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG-CSFSGSILK 541 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng-~~l~Gr~l~ 541 (967)
..||+|||.+.++..+|..+|...- +. .....-...|||||.+.+...|.+|++ ++| ..+.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-------~~-----~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-------IP-----GSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-------CC-----CCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 3699999999999999999995531 11 111222346999999999999999999 888 668898888
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEee
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEY 621 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF 621 (967)
|.. ..+ .....+++.|.|+|+...++.|-.++..||.|..|..+. ..+..-..-|+|
T Consensus 70 ~~~----sv~------------------kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn-t~~etavvnvty 126 (584)
T KOG2193|consen 70 VEH----SVP------------------KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN-TDSETAVVNVTY 126 (584)
T ss_pred ccc----hhh------------------HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc-cchHHHHHHHHH
Confidence 752 100 011245688999999999999999999999999886532 222344556889
Q ss_pred cCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 622 VDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 622 ~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.+.+.+..|+..|+|..|....++|.|-
T Consensus 127 ~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 127 SAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 9999999999999999999999999885
No 143
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=97.72 E-value=9.6e-06 Score=70.94 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=14.8
Q ss_pred ccccccccccCCCcchhccc
Q 002093 859 NIQLEHMSEENKSSAKEDLN 878 (967)
Q Consensus 859 ~i~~~c~~~~n~f~~~~e~~ 878 (967)
.|+++||+|+|||||.+|+.
T Consensus 51 ~~aS~C~lLkNMFDP~~Ete 70 (73)
T PF15519_consen 51 PIASRCFLLKNMFDPAEETE 70 (73)
T ss_dssp S---SEEEEESSS-TTCGGS
T ss_pred CCCCceeeeecCCCcccccC
Confidence 38999999999999999887
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.71 E-value=0.00011 Score=84.72 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=60.4
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
...+|||+|||+++|+.+|.++|..||.+.... | .++. .-+....||||+|.+.+++..||..+-+.++|+.|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~-I----~vr~-~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~ 360 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGG-I----QVRS-PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLN 360 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccc-e----EEec-cCCCcCceEEEEEeecchhhhhhhcCccccCCeeEE
Confidence 345699999999999999999999999644321 0 1121 124444899999999999999999888889999999
Q ss_pred Ee
Q 002093 542 IK 543 (967)
Q Consensus 542 V~ 543 (967)
|.
T Consensus 361 Ve 362 (419)
T KOG0116|consen 361 VE 362 (419)
T ss_pred EE
Confidence 86
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.70 E-value=5.9e-05 Score=88.53 Aligned_cols=77 Identities=16% Similarity=0.406 Sum_probs=69.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-----CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-----DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-----~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
..++|||+||++.++++.|...|..||+|..|+|.... ...+.|+||-|.+..+|.+|++.|+|+.+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 35789999999999999999999999999999887652 2347799999999999999999999999999999999
Q ss_pred Ec
Q 002093 648 QA 649 (967)
Q Consensus 648 ~a 649 (967)
|+
T Consensus 253 Wg 254 (877)
T KOG0151|consen 253 WG 254 (877)
T ss_pred cc
Confidence 88
No 146
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.69 E-value=7.3e-05 Score=80.01 Aligned_cols=76 Identities=26% Similarity=0.337 Sum_probs=64.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
....+|+|.|||+.++++||++||..||. +..+ .|-.-..|.+.|.|-|.|...++|..|++ +||+.+.|++
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~---~~r~----~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGE---LKRV----AVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhcc---ceEE----eeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 34468999999999999999999999983 2222 23344568899999999999999999999 9999999999
Q ss_pred eEEe
Q 002093 540 LKIK 543 (967)
Q Consensus 540 l~V~ 543 (967)
|++.
T Consensus 154 mk~~ 157 (243)
T KOG0533|consen 154 MKIE 157 (243)
T ss_pred eeeE
Confidence 9887
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.65 E-value=9.2e-05 Score=87.00 Aligned_cols=84 Identities=26% Similarity=0.278 Sum_probs=69.3
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
......|||+||++.++++.|...|-.||++.++...- |-......+.+.+|||-|-+-.+|+.||. |+|+.+.+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimw---pRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMW---PRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeec---ccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 44566899999999999999999999999877764332 22333445677899999999999999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
+|++.|.+
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 99998754
No 148
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.65 E-value=0.00013 Score=78.09 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.+.+|+|.|||..++++||+++|..||.+..+.|..+. +.+.|.|-|.|...++|.+|++.+||..++|+.|.+....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 45789999999999999999999999988888777775 45789999999999999999999999999999998877644
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.64 E-value=4.8e-05 Score=84.12 Aligned_cols=171 Identities=11% Similarity=0.029 Sum_probs=121.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEee--cCCCCCCEEEEeecCcchHHHHHHHhCC-CccCCeEEEEEEc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEV--NEDHEEPCAFIEYVDQLVTPKAIAGLNG-LKVGGQVLTAVQA 649 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~--d~~~skG~aFVeF~~~e~A~~Al~~LnG-~~~~Gr~I~V~~a 649 (967)
...++|++++...+.+.++..++..+|.+....+.. +...++|++++.|...+.+..||. +.+ ..+.+..+..-..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 457899999999988888889999999877765543 345679999999999999999997 444 4555555543222
Q ss_pred ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC-CC
Q 002093 650 VLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GD 728 (967)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~-~~ 728 (967)
..-..... ..........+..++++.|+..... .+||+..|..+|.|..|.++.. ..
T Consensus 166 ~~~~~~~~----------n~~~~~~~~~s~~~~~~~~~~f~~~------------~d~~~~~~~~~~~i~~~r~~~~~~s 223 (285)
T KOG4210|consen 166 TRRGLRPK----------NKLSRLSSGPSDTIFFVGELDFSLT------------RDDLKEHFVSSGEITSVRLPTDEES 223 (285)
T ss_pred cccccccc----------chhcccccCccccceeecccccccc------------hHHHhhhccCcCcceeeccCCCCCc
Confidence 11110000 0000111233445555666644222 2567789999999999999976 57
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEe
Q 002093 729 SNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 767 (967)
Q Consensus 729 g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~ 767 (967)
+.+.||+||.|.+...+..|+.. ++..+.++++.+...
T Consensus 224 ~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 224 GDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred cchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 88999999999999999999998 899999998877443
No 150
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.57 E-value=4.5e-05 Score=80.59 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEe
Q 002093 699 LEVEEVLEDVRLECA-RFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 767 (967)
Q Consensus 699 ~~~eei~eDIr~~f~-kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~ 767 (967)
..++++.|||..+|+ +||+|+.++|..+-.....|-+||+|...++|++|++.|||+.|+|+.+....+
T Consensus 76 ~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 76 RHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 356888899999998 999999999998877777888999999999999999999999999999975443
No 151
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.49 E-value=0.00047 Score=63.74 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=63.8
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhc--CCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccC----CeEEEE
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAF--GPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVG----GQVLTA 646 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~--G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~----Gr~I~V 646 (967)
++|.|.|||...|.++|.+++... |..--+.++.|- ..+.|||||.|.+++.|..-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998764 556667888883 346999999999999999999999998763 566677
Q ss_pred EEccc
Q 002093 647 VQAVL 651 (967)
Q Consensus 647 ~~a~~ 651 (967)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77744
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.48 E-value=8.6e-05 Score=79.54 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=68.5
Q ss_pred cCCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeec
Q 002093 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSG 537 (967)
Q Consensus 458 ~~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~G 537 (967)
+.......+||||+.+.+|.+++...|+.||.+.++. ...+...+..+|||||+|.+.+.+..||.|||..|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~t------i~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~ 169 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVT------VPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPG 169 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCcccee------eeccccCCCcceeEEEecccHhhhHHHhhcCCccccc
Confidence 3456678999999999999999999999999654432 2245566779999999999999999999999999999
Q ss_pred ceeEEeC
Q 002093 538 SILKIKR 544 (967)
Q Consensus 538 r~l~V~r 544 (967)
+.+.|..
T Consensus 170 ~~i~vt~ 176 (231)
T KOG4209|consen 170 PAIEVTL 176 (231)
T ss_pred ccceeee
Confidence 9999874
No 153
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.46 E-value=0.00014 Score=76.40 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=68.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...-+||.|.|...++.+.|...|..|= ..+....|.+..+++++||+||.|.++.++..||. |||..++.++
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfp------sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFP------SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhcc------chhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 4456899999999999999999998874 34444567889999999999999999999999999 9999999999
Q ss_pred eEEe
Q 002093 540 LKIK 543 (967)
Q Consensus 540 l~V~ 543 (967)
|+++
T Consensus 262 iklR 265 (290)
T KOG0226|consen 262 IKLR 265 (290)
T ss_pred hHhh
Confidence 9987
No 154
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.43 E-value=0.00027 Score=81.41 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=64.3
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...|||.|||.+++..+|+++|..||.|+...|..-. +...+||||+|.+.+.+..||.+ +-..++++.|.|.--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 3459999999999999999999999999987665432 33348999999999999999974 47889999999976433
No 155
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.43 E-value=0.00032 Score=64.86 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=55.3
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
.||+|.|||...|.++|.+++..... .....+ -+-+|..++.+.|||||.|.+++.|..... ++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~-g~yDF~---YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK-GKYDFF---YLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc-CcceEE---EeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 48999999999999999999987642 111111 123677788899999999999999999999 9998774
No 156
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=97.28 E-value=0.00093 Score=66.57 Aligned_cols=18 Identities=17% Similarity=-0.068 Sum_probs=14.1
Q ss_pred ccCCCCCCCCCcCCCCCc
Q 002093 388 KKSAKWDVAPVETYSVPS 405 (967)
Q Consensus 388 R~~~~~d~~P~~~~sv~~ 405 (967)
.-...|++||.+++-+.+
T Consensus 114 iI~~yv~VPp~gf~~~y~ 131 (182)
T PF06495_consen 114 IITKYVDVPPPGFEYAYG 131 (182)
T ss_pred eeeeeccCCCcccccccC
Confidence 346889999999976554
No 157
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.21 E-value=0.00036 Score=74.84 Aligned_cols=79 Identities=11% Similarity=0.232 Sum_probs=71.1
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....+||+|+...+|.+++...|+.||.|.-+.|..|.. ..+||+||+|.+.+.+..|+. |+|-.|.|+.|.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 467899999999999999999999999999888888754 469999999999999999998 99999999999998875
Q ss_pred cC
Q 002093 651 LD 652 (967)
Q Consensus 651 ~~ 652 (967)
-+
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 44
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.20 E-value=0.0015 Score=57.98 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=45.4
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEe
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~ 543 (967)
.|||.|||.+.+...|+.-+.+.-..+|- .|+.+ +.+.|+|.|.+++.|..|+. |+|..+.|..|.|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-------kVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGG-------KVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT---------EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCC-------EEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 69999999998887766555543332321 34444 46899999999999999999 99999999999998
Q ss_pred C
Q 002093 544 R 544 (967)
Q Consensus 544 r 544 (967)
.
T Consensus 73 ~ 73 (90)
T PF11608_consen 73 F 73 (90)
T ss_dssp S
T ss_pred E
Confidence 5
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.08 E-value=7.9e-05 Score=82.75 Aligned_cols=152 Identities=15% Similarity=0.232 Sum_probs=111.3
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcC--CeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCC-CccCCeEEEEEEccc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFG--PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNG-LKVGGQVLTAVQAVL 651 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G--~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG-~~~~Gr~I~V~~a~~ 651 (967)
++||++||.+.++..+|..+|...- .-..+.+ ..||+||.+.+...|.+|++.|+| ..+.|+.+.|.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4789999999999999999997641 1111222 379999999999999999999999 568999999887765
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCc
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNI 731 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~ 731 (967)
.... ++-+.|.|+.. .| - - +-+-.+...||.|++|..+.....
T Consensus 76 kkqr-----------------------srk~Qirnipp--ql---~----w---evld~Ll~qyg~ve~~eqvnt~~e-- 118 (584)
T KOG2193|consen 76 KKQR-----------------------SRKIQIRNIPP--QL---Q----W---EVLDSLLAQYGTVENCEQVNTDSE-- 118 (584)
T ss_pred HHHH-----------------------hhhhhHhcCCH--HH---H----H---HHHHHHHhccCCHhHhhhhccchH--
Confidence 4331 33466666643 11 1 1 224556789999999987543211
Q ss_pred ceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 732 STIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 732 ~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
....-|+|...+.++.||..|||..|..-.++++...+
T Consensus 119 tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 119 TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 11123899999999999999999999988888766554
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0014 Score=75.62 Aligned_cols=77 Identities=6% Similarity=0.014 Sum_probs=64.8
Q ss_pred CCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCcc
Q 002093 678 PTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDET 757 (967)
Q Consensus 678 ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~ 757 (967)
-..|++|.|+.. +.+.-++.+.--|..+|++||+|.++.+|-++.|.++||.|++|++..+|+.|++.|||..|
T Consensus 57 ~D~vVvv~g~Pv------V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 57 FDSVVVVDGAPV------VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred cceEEEECCCcc------cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhccccee
Confidence 356777777754 34455667777789999999999999999998888999999999999999999999999988
Q ss_pred CCC
Q 002093 758 NEK 760 (967)
Q Consensus 758 ~~r 760 (967)
.-.
T Consensus 131 dkn 133 (698)
T KOG2314|consen 131 DKN 133 (698)
T ss_pred ccc
Confidence 543
No 161
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.72 E-value=0.0041 Score=55.35 Aligned_cols=69 Identities=10% Similarity=0.173 Sum_probs=47.7
Q ss_pred ceEEEcCCCcccCHH----HHHHHHHhcCC-eeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 575 HKIFIGGISRTLSSK----MVMEIVCAFGP-LKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 575 ~~L~V~nLp~~~tee----dL~e~Fsk~G~-V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
..|+|.|||...+.. -|+.++..+|. |..| +.+.|+|.|.+.+.|.+|++.|+|-.+.|..|.|++.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 468999999887765 46677778764 5444 3689999999999999999999999999999999987
Q ss_pred cc
Q 002093 650 VL 651 (967)
Q Consensus 650 ~~ 651 (967)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.49 E-value=0.0035 Score=69.48 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccc--cCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHV--HGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v--~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
...-+|||-+||..+++.+|.++|.+++.+.--... +.+.+-.+..|+..||-|.|.|.++..|+.|+. +++..|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 345589999999999999999999998853321111 111222455778999999999999999999999 99999999
Q ss_pred ceeEEeC
Q 002093 538 SILKIKR 544 (967)
Q Consensus 538 r~l~V~r 544 (967)
.+|+|..
T Consensus 144 n~ikvs~ 150 (351)
T KOG1995|consen 144 NTIKVSL 150 (351)
T ss_pred CCchhhh
Confidence 9998863
No 163
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.29 E-value=0.0056 Score=57.74 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=38.1
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhC
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 635 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~Ln 635 (967)
..|+|.+++..++.++|++.|+.||.|..|.+.. +...|||.|.+.+.|..|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T-SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CCCEEEEEECCcchHHHHHHHHH
Confidence 3578888999999999999999999999888754 35699999999999999998775
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.14 E-value=0.011 Score=64.53 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=63.0
Q ss_pred CCceEEEcCCCcccCHHHH------HHHHHhcCCeeEEEEeecCC---CCCC--EEEEeecCcchHHHHHHHhCCCccCC
Q 002093 573 SPHKIFIGGISRTLSSKMV------MEIVCAFGPLKAYHFEVNED---HEEP--CAFIEYVDQLVTPKAIAGLNGLKVGG 641 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL------~e~Fsk~G~V~~v~l~~d~~---~skG--~aFVeF~~~e~A~~Al~~LnG~~~~G 641 (967)
..+-+||-+|++.+-.+++ .++|.+||.|..|.|.+... +..+ -+||.|.+.++|..||+..+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567899999988776662 48999999999988865431 1133 35999999999999999999999999
Q ss_pred eEEEEEEc
Q 002093 642 QVLTAVQA 649 (967)
Q Consensus 642 r~I~V~~a 649 (967)
+.|++.|.
T Consensus 193 r~lkatYG 200 (480)
T COG5175 193 RVLKATYG 200 (480)
T ss_pred ceEeeecC
Confidence 99999875
No 165
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=95.79 E-value=0.011 Score=68.48 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=3.4
Q ss_pred CCCccccc
Q 002093 182 PNVKSEKL 189 (967)
Q Consensus 182 ~~~~~~~~ 189 (967)
+.|++|++
T Consensus 549 p~p~sErl 556 (757)
T KOG4368|consen 549 PMPPSERL 556 (757)
T ss_pred CCChHHHH
Confidence 34444443
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.71 E-value=0.008 Score=66.73 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeE--------EEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCe
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKA--------YHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ 642 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~--------v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr 642 (967)
...+|||.+||..+++.+|.++|.++|.|.. |.|-+++. ..||-|.|.|.+...|..|+.-+++..|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 3568999999999999999999999998743 44445543 4599999999999999999999999999999
Q ss_pred EEEEEEcccC
Q 002093 643 VLTAVQAVLD 652 (967)
Q Consensus 643 ~I~V~~a~~~ 652 (967)
+|+|..|...
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9999887543
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.47 E-value=0.038 Score=58.80 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=75.5
Q ss_pred hHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHH
Q 002093 626 VTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVL 705 (967)
Q Consensus 626 ~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~ 705 (967)
-|..|-..|+|....|+.|.|.|+.. ..|+|.|+..-...
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------------a~l~V~nl~~~~sn------------ 45 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH----------------------------AELYVVNLMQGASN------------ 45 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc----------------------------ceEEEEecchhhhh------------
Confidence 45667778999999999999999943 34666666432221
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 002093 706 EDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKG 761 (967)
Q Consensus 706 eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~ 761 (967)
+-+.+.|..||.|+..++..|..+...+-++|.|...-.|.+|....+-.-|++.+
T Consensus 46 dll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~ 101 (275)
T KOG0115|consen 46 DLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTT 101 (275)
T ss_pred HHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCC
Confidence 23678899999999999999988888899999999999999999988655555443
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.028 Score=65.40 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=58.6
Q ss_pred CceEEEcCCCcccCH------HHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCC-eEEE
Q 002093 574 PHKIFIGGISRTLSS------KMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG-QVLT 645 (967)
Q Consensus 574 ~~~L~V~nLp~~~te------edL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~G-r~I~ 645 (967)
.+.|+|-|+|..-.. .-|..+|+++|+|..+.++.+. +.++||.|++|.+..+|..|++.|||..|.- ..+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 467888898854322 3467899999999999887664 4579999999999999999999999988854 4455
Q ss_pred EE
Q 002093 646 AV 647 (967)
Q Consensus 646 V~ 647 (967)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 54
No 169
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.33 E-value=0.037 Score=52.21 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=39.8
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-cc-----Cceeec
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD-----GCSFSG 537 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-ln-----g~~l~G 537 (967)
.-|+|.+++..++-++|+++|+.|| .|..+.....-..|||-|.+++.|..|+. +. +..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g------------~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~ 69 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG------------EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKG 69 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--------------EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTS
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC------------CcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcC
Confidence 3589999999999999999999998 33445555556689999999999999998 33 234455
Q ss_pred ceeEEe
Q 002093 538 SILKIK 543 (967)
Q Consensus 538 r~l~V~ 543 (967)
..+.+.
T Consensus 70 ~~~~~~ 75 (105)
T PF08777_consen 70 KEVTLE 75 (105)
T ss_dssp SSEEEE
T ss_pred ceEEEE
Confidence 444443
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.27 E-value=0.063 Score=50.11 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=52.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEE-Eeec-------C-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeE-
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYH-FEVN-------E-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV- 643 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~-l~~d-------~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~- 643 (967)
..-|.|-+.|+.. ...|.+.|++||.|.... +.++ + .....+..|.|.++.+|.+||. -||..|+|..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4568899999884 467888999999987653 1111 1 1246799999999999999996 8999998864
Q ss_pred EEEEEcc
Q 002093 644 LTAVQAV 650 (967)
Q Consensus 644 I~V~~a~ 650 (967)
|-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5576663
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.21 E-value=0.026 Score=61.90 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
..-.+|||||-.++|.+||.+.+...| +..+....-+.+...|.+||||+|...+.....+-|+ |....|.|+.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G----~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTG----LAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhh----HHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 344689999999999999999998877 4444332233455669999999999999999999999 88899999876
Q ss_pred EEe
Q 002093 541 KIK 543 (967)
Q Consensus 541 ~V~ 543 (967)
.|-
T Consensus 155 ~V~ 157 (498)
T KOG4849|consen 155 TVL 157 (498)
T ss_pred eee
Confidence 664
No 172
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.16 E-value=0.057 Score=44.40 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=42.0
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHH
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAAL 528 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al 528 (967)
+.|-|.+.+++..+.-| ..|.+|| .|.+........++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fG------------eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFG------------EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcC------------CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 47889999988876544 5888899 4456666667889999999999999996
No 173
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.02 E-value=0.024 Score=67.35 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
+.-++||+||-..+..+-++.++..+|.+.. +.. -.|||++|..+.-+..|+. ++.+.+.|+.+
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s------------~kr---~~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPS------------WKR---DKFGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchh------------hhh---hhhcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 3458999999999999999999998883222 111 1199999999999999999 88888889888
Q ss_pred EEe
Q 002093 541 KIK 543 (967)
Q Consensus 541 ~V~ 543 (967)
.+.
T Consensus 104 ~~~ 106 (668)
T KOG2253|consen 104 IEN 106 (668)
T ss_pred hcc
Confidence 765
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.36 E-value=0.073 Score=43.80 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=42.2
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHH
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAI 631 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al 631 (967)
+.|.|.|.++... +.|...|..||.|.++.+.. ...+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC----CCcEEEEEECCHHHHHhhC
Confidence 4577888887765 45666888999999998852 4679999999999999985
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.36 E-value=0.17 Score=47.32 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=48.8
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCC-cCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGS-LPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~-~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
...|.|-+.|+. .-..|...|+.||.+.....+... .-+.........+...|.|.++.+|.+||..||..|.|.-|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 456889999998 455788899999964332111000 000000223456789999999999999999999999987654
No 176
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.35 E-value=0.049 Score=64.06 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=15.7
Q ss_pred cccccccccccc-ccccCcccccccc--chhhhhhhhhh
Q 002093 99 VGSGKKEDNALT-KNVDSSRQRDGEN--RDLETKLKEDY 134 (967)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 134 (967)
++|.++-..+.. -+-.--+|++.-+ ..++.||-.|.
T Consensus 606 ~Is~~~p~~t~~~l~ak~akq~d~~~~a~va~eKLaqe~ 644 (878)
T KOG1847|consen 606 SISVEPPDSTISGLGAKAAKQRDSSSIAYVAEEKLAQEG 644 (878)
T ss_pred cccccCCCCCccccChHHHhhhhhhHHHHHHHHHHHhhh
Confidence 445555544442 2222233333221 24566666554
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.10 E-value=0.016 Score=61.61 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=55.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeee--eeecCCCc--E--EEEEEcCHHHHHHHHH-ccCce
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIG--CVIQREKG--Q--AFVEFLTAEDASAALC-CDGCS 534 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~--~~~~~skG--~--aFVeF~~~e~A~~Al~-lng~~ 534 (967)
..--||+++||+.+...-|+++|+.||.+.-|..-+...-... ...+...+ | |.|+|.+-..|..+.. ||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999997554432221100000 01122222 2 8899999999999888 99999
Q ss_pred eeccee
Q 002093 535 FSGSIL 540 (967)
Q Consensus 535 l~Gr~l 540 (967)
|+|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998753
No 178
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.89 E-value=0.049 Score=64.08 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=3.6
Q ss_pred CCcCCCCCc
Q 002093 286 RRRSRSRER 294 (967)
Q Consensus 286 rrRSRSRdr 294 (967)
|.|++|||+
T Consensus 780 r~R~sSrd~ 788 (878)
T KOG1847|consen 780 RHRDSSRDE 788 (878)
T ss_pred cccccccCc
Confidence 334444433
No 179
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.88 E-value=0.13 Score=54.86 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=69.4
Q ss_pred HHHHHH-ccCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCee
Q 002093 524 ASAALC-CDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLK 602 (967)
Q Consensus 524 A~~Al~-lng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~ 602 (967)
|..|-. |++....|+.|+|..+ ....|+|.||...++.+.|...|+.||+|.
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa---------------------------~~a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFA---------------------------MHAELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEee---------------------------ccceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 556666 8999999999999831 114699999999999999999999999997
Q ss_pred EE-EEeecCCCCCCEEEEeecCcchHHHHHHHhC
Q 002093 603 AY-HFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 635 (967)
Q Consensus 603 ~v-~l~~d~~~skG~aFVeF~~~e~A~~Al~~Ln 635 (967)
.. .++.+.+...+-++|+|...-.|.+|+..+.
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 64 4444455668899999999999999988763
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=93.82 E-value=0.038 Score=58.76 Aligned_cols=70 Identities=16% Similarity=0.358 Sum_probs=59.6
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC----------CC----CEEEEeecCcchHHHHHHHhCCCcc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH----------EE----PCAFIEYVDQLVTPKAIAGLNGLKV 639 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~----------sk----G~aFVeF~~~e~A~~Al~~LnG~~~ 639 (967)
...||+++||+.+.-.-|+++|+.||.|-.|+|...... +. --|+|+|.+...|......|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999999998665322 11 2578999999999999999999999
Q ss_pred CCeE
Q 002093 640 GGQV 643 (967)
Q Consensus 640 ~Gr~ 643 (967)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8875
No 181
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.76 E-value=0.095 Score=57.45 Aligned_cols=59 Identities=12% Similarity=-0.015 Sum_probs=46.8
Q ss_pred HHHHhcCCCeEEEEEecCCCCC---cc-eeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEe
Q 002093 709 RLECARFGSVKSVNVVKYGDSN---IS-TIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 767 (967)
Q Consensus 709 r~~f~kFG~V~~V~I~r~~~g~---~~-G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~ 767 (967)
.++|..||+|..|.|.+..... .. .-.||+|.+.++|..||.++.|..+.|+.++-...
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYG 200 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYG 200 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecC
Confidence 4679999999999998753111 11 12599999999999999999999999999985443
No 182
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.45 E-value=0.071 Score=60.42 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec---CCC------------CCCEEEEeecCcchHHHHHHHhCC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN---EDH------------EEPCAFIEYVDQLVTPKAIAGLNG 636 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d---~~~------------skG~aFVeF~~~e~A~~Al~~LnG 636 (967)
...+|.+-|||..-.-+-|.++|..+|.|..|+|... ... .+-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 4688999999999888999999999999999999765 111 144899999999999999997754
No 183
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=93.22 E-value=0.048 Score=54.37 Aligned_cols=9 Identities=89% Similarity=1.158 Sum_probs=3.5
Q ss_pred CCcCCCCCc
Q 002093 286 RRRSRSRER 294 (967)
Q Consensus 286 rrRSRSRdr 294 (967)
+.|||++++
T Consensus 64 rsRsR~reR 72 (196)
T KOG3263|consen 64 RSRSRSRER 72 (196)
T ss_pred ccccccccc
Confidence 334443333
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.95 E-value=0.082 Score=62.00 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhc-CCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCcc---CCeEEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAF-GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV---GGQVLTAVQ 648 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~-G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~---~Gr~I~V~~ 648 (967)
..+.|+|.||-.-+|.-+|++++..- |.|..+.| |+ -+..|||.|.+.++|.+.+.+|||..+ +++.|.|.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 45889999999999999999999965 55555533 21 377899999999999999999999765 677788877
Q ss_pred ccc
Q 002093 649 AVL 651 (967)
Q Consensus 649 a~~ 651 (967)
...
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 643
No 185
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.92 E-value=0.082 Score=58.17 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=62.3
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCC--eeEEEEeec--CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGP--LKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~--V~~v~l~~d--~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.++|||||-+.+|++||.+.+...|. +.+++++.+ .+.++|||+|...+...+.+.++.|--..|.|+.-+|..+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 57999999999999999999988774 455666555 3457999999999999999999999988998887776544
No 186
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.85 E-value=0.31 Score=48.37 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 590 MVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 590 dL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
+|.+.|..||.+.-|+++. +.-+|.|.+-.+|.+|+. |+|..++|+.|.|+.-.|+
T Consensus 52 ~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 6788889999888777753 578999999999999996 9999999999999887654
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.64 E-value=0.23 Score=58.49 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=59.0
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee---
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF--- 535 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l--- 535 (967)
...++.|||.||---+|.-+|++|+..-|. .|...++.+-|..|||.|.+.++|-.-.. |+|..+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg-----------~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGG-----------NVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccC-----------chHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 456789999999999999999999975442 44566888889999999999999999998 999776
Q ss_pred ecceeEEe
Q 002093 536 SGSILKIK 543 (967)
Q Consensus 536 ~Gr~l~V~ 543 (967)
+++.|.+.
T Consensus 510 NPK~L~ad 517 (718)
T KOG2416|consen 510 NPKHLIAD 517 (718)
T ss_pred CCceeEee
Confidence 34555543
No 188
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=92.39 E-value=0.32 Score=56.99 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHHHHHhcCCe
Q 002093 591 VMEIVCAFGPL 601 (967)
Q Consensus 591 L~e~Fsk~G~V 601 (967)
|++++.+||.-
T Consensus 520 LRevLKKyG~n 530 (752)
T KOG0670|consen 520 LREVLKKYGRN 530 (752)
T ss_pred HHHHHHHhCcc
Confidence 55666666643
No 189
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=90.80 E-value=0.15 Score=57.85 Aligned_cols=83 Identities=23% Similarity=0.125 Sum_probs=57.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCC-------CcEEEEEEcCHHHHHHHHH-ccC
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQRE-------KGQAFVEFLTAEDASAALC-CDG 532 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~s-------kG~aFVeF~~~e~A~~Al~-lng 532 (967)
-+.++|.+-|||.+-.-+.|.++|..||.+..|.....+.+-.++..... +-+|||+|...+.|.+|.+ ||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46899999999999888999999999998666554443211122222222 3459999999999999999 544
Q ss_pred ceeecceeEEe
Q 002093 533 CSFSGSILKIK 543 (967)
Q Consensus 533 ~~l~Gr~l~V~ 543 (967)
..-+-.-|+|.
T Consensus 309 e~~wr~glkvk 319 (484)
T KOG1855|consen 309 EQNWRMGLKVK 319 (484)
T ss_pred hhhhhhcchhh
Confidence 44433334443
No 190
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=89.90 E-value=1.5 Score=43.62 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 702 EEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 702 eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
+.+..+|-+.|..||+|.-|.+.- +--+|+|.+-+.|.+| ..|+|.+++|+.+++...+.
T Consensus 47 d~l~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaa-ls~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 47 DNLMDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAA-LSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHH-HHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHH-HccCCcEECCEEEEEEeCCc
Confidence 456678888999999988776654 2357999999999877 46899999999999987654
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.49 E-value=1.1 Score=40.18 Aligned_cols=56 Identities=11% Similarity=0.256 Sum_probs=43.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 635 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~Ln 635 (967)
..+..+|. +|..+...||.++|+.||.|. |.++.| .-|||.+.+.+.|..|+..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 34666676 999999999999999999984 555544 579999999999999998775
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.97 E-value=1.4 Score=37.53 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=44.1
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhc----CCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHh
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAF----GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGL 634 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~----G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~L 634 (967)
+.+|+|.|+.. ++.++|+.+|..| + ...|.++.|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 57899999864 7788999999999 4 3468887763 4778999999999999765
No 193
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=88.66 E-value=0.68 Score=47.97 Aligned_cols=8 Identities=13% Similarity=0.484 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 002093 479 ALMEFLNN 486 (967)
Q Consensus 479 dL~~~F~~ 486 (967)
+.+++++-
T Consensus 161 ~yRQYMNR 168 (180)
T PF08648_consen 161 KYRQYMNR 168 (180)
T ss_pred HHHHHHhh
Confidence 34444443
No 194
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=85.90 E-value=0.44 Score=55.35 Aligned_cols=19 Identities=11% Similarity=-0.104 Sum_probs=9.1
Q ss_pred eCCCCcchHHHHHHHHHHh
Q 002093 469 ENLPLSASEKALMEFLNNF 487 (967)
Q Consensus 469 gNLp~~~TeedL~~~F~~f 487 (967)
||--+..|...+...|-+|
T Consensus 555 G~~r~klt~~~~lk~rmq~ 573 (653)
T KOG2548|consen 555 GNSRPKLTFFECLKSRMQF 573 (653)
T ss_pred CCCCCcccHHHHHHHHHHH
Confidence 4444555554444444443
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=85.65 E-value=3.1 Score=39.64 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=51.2
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcC-CeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccC
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFG-PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG 640 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G-~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~ 640 (967)
..+.+...|..++.++|..+.+.+- .|.+++|+++...++-.+.++|.+...|..-...+||..|+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444555556666677776666654 56789999997667889999999999999999999998875
No 196
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=85.50 E-value=3 Score=49.32 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=7.7
Q ss_pred HHHHHhcCCCeEEEE
Q 002093 708 VRLECARFGSVKSVN 722 (967)
Q Consensus 708 Ir~~f~kFG~V~~V~ 722 (967)
|++++.+||.-.-+.
T Consensus 520 LRevLKKyG~nvGL~ 534 (752)
T KOG0670|consen 520 LREVLKKYGRNVGLH 534 (752)
T ss_pred HHHHHHHhCccccee
Confidence 455556666443333
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.47 E-value=0.35 Score=49.97 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHH-hhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNN-FLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~-fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
...+|.|++||+++||+++.+.+.+ ++.......+.+. +-.... ...-..|||.|.+.+++..... ++|..|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~--~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGK--YGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEE--ES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecC--CCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 3458999999999999999886655 3321000111100 000001 1123459999999999999998 999888554
Q ss_pred e
Q 002093 539 I 539 (967)
Q Consensus 539 ~ 539 (967)
.
T Consensus 84 k 84 (176)
T PF03467_consen 84 K 84 (176)
T ss_dssp T
T ss_pred C
Confidence 3
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.04 E-value=3.5 Score=43.00 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhC--CCccCCeEEEEEEcccC
Q 002093 588 SKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN--GLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 588 eedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~Ln--G~~~~Gr~I~V~~a~~~ 652 (967)
...|+++|..|+.+..+.+++ +-+=..|.|.+.+.|..|...|+ +..|.|..|+|.++.+.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 468999999999998887765 46778999999999999999999 99999999999998543
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.12 E-value=3.8 Score=47.31 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=60.9
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcC-CeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCC
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFG-PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG 641 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G-~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~G 641 (967)
...|+|-.+|..++..||..|+..+- .|.+|+|++|..+++=.+.|.|.+.++|..--+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999999865 578899999876778899999999999999999999988854
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=80.47 E-value=4.1 Score=40.22 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=51.7
Q ss_pred CceEEEcCCC----cccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 574 PHKIFIGGIS----RTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 574 ~~~L~V~nLp----~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
-.+|.|.=|. +.-+...|...++.||+|.+|.+. ++--|.|.|.+..+|.+|+.+++. ...|..+.+.|-
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3567776444 333344567778899999999763 477899999999999999998875 556666666553
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=79.54 E-value=1.9 Score=39.32 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=45.8
Q ss_pred EEEEEcCHHHHHHHHHccC--ceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHH
Q 002093 514 AFVEFLTAEDASAALCCDG--CSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMV 591 (967)
Q Consensus 514 aFVeF~~~e~A~~Al~lng--~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL 591 (967)
|+|+|.++.-|..-+.+.. ..+.+..+.|. ++.|... .... ..-....+.++|.|.|||..+.+++|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~-v~P~~~~---~~~k-------~qv~~~vs~rtVlvsgip~~l~ee~l 69 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK-VSPVTLG---HLQK-------FQVFSGVSKRTVLVSGIPDVLDEEEL 69 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE-EEeEecC---CceE-------EEEEEcccCCEEEEeCCCCCCChhhh
Confidence 6899999999999998444 55566666665 1111111 0000 00011235789999999999999999
Q ss_pred HHHH
Q 002093 592 MEIV 595 (967)
Q Consensus 592 ~e~F 595 (967)
++.+
T Consensus 70 ~D~L 73 (88)
T PF07292_consen 70 RDKL 73 (88)
T ss_pred eeeE
Confidence 9844
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.20 E-value=13 Score=40.94 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
..-|-|-++|+..+- .|..+|..|| .|++..+.....+-+|.|.+.-+|.+||..||+.|.|..|
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG------------~Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCG------------EVVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhC------------eeeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceE
Confidence 345667788876554 5778899998 4566777777779999999999999999999999988654
No 203
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=77.94 E-value=1.9 Score=51.85 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=61.9
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....++||+|+...+.++-++.+...+|.|.++..+. |||++|..+..+..|+..|+-..++|+.+.+..-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3467999999999999999999999999988765432 9999999999999999999999999999887553
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=77.59 E-value=1.8 Score=44.79 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=44.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHHh-cCCe---eEEEEeecCC----CCCCEEEEeecCcchHHHHHHHhCCCcc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCA-FGPL---KAYHFEVNED----HEEPCAFIEYVDQLVTPKAIAGLNGLKV 639 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk-~G~V---~~v~l~~d~~----~skG~aFVeF~~~e~A~~Al~~LnG~~~ 639 (967)
..+|.|..||+.+|++++.+.++. ++.. ..+....... ..-.-|||.|.+.+++..-...++|+.|
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 568999999999999998887766 5554 2333112211 1245899999999999999999999776
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=77.42 E-value=0.81 Score=51.00 Aligned_cols=77 Identities=16% Similarity=0.324 Sum_probs=60.3
Q ss_pred CceEEEcCCCcccCHHHHH---HHHHhcCCeeEEEEeecCC--CC---CCEEEEeecCcchHHHHHHHhCCCccCCeEEE
Q 002093 574 PHKIFIGGISRTLSSKMVM---EIVCAFGPLKAYHFEVNED--HE---EPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 645 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~---e~Fsk~G~V~~v~l~~d~~--~s---kG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~ 645 (967)
.+-+||-+|+..+-.+.+. +.|.+||.|..|.+..+.. .+ ---+||.|...++|..||...+|+.+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4567888888777665554 5788899999988877652 11 12489999999999999999999999999988
Q ss_pred EEEcc
Q 002093 646 AVQAV 650 (967)
Q Consensus 646 V~~a~ 650 (967)
+.+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 76653
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.40 E-value=3.8 Score=42.75 Aligned_cols=60 Identities=12% Similarity=-0.027 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhC--CCccCCCcceeEEe
Q 002093 703 EVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLT--NDETNEKGERLEEV 767 (967)
Q Consensus 703 ei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~Ln--G~~~~~r~~~v~~~ 767 (967)
+++..|+.+|..|+.+..+.+.+ +.+-..|.|.+.+.|..|...|+ +..|.|..+++-..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hhHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 34467899999999999888876 34556799999999999999999 99999999887554
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=77.04 E-value=1.3 Score=49.31 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=46.1
Q ss_pred HHHHhcCCCeEEEEEecCCC--CC--cceeEEEEeCCHHHHHHHHHHhCCCccCCCccee
Q 002093 709 RLECARFGSVKSVNVVKYGD--SN--ISTIQACEGNENTASAGVGQNLTNDETNEKGERL 764 (967)
Q Consensus 709 r~~f~kFG~V~~V~I~r~~~--g~--~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v 764 (967)
.+.|..||.|..|.+.++.. .. ....+||+|...++|..||+..+|+.+.|+.++.
T Consensus 98 ~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 98 TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 56789999999999998652 11 1224899999999999999999999999999653
No 208
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=76.65 E-value=3.5 Score=48.62 Aligned_cols=69 Identities=13% Similarity=0.250 Sum_probs=53.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccC--ceeecce
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG--CSFSGSI 539 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng--~~l~Gr~ 539 (967)
-|.|+|+-||..+-+++|+.||.. +...++++|..+.+.+ .||+|.+..+|..|+. |.. ..|.|++
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~----------encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKG----------ENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhcc----------CCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 356789999999999999999943 1112668888876544 5999999999999998 544 6678888
Q ss_pred eEE
Q 002093 540 LKI 542 (967)
Q Consensus 540 l~V 542 (967)
|.-
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 754
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.64 E-value=8.4 Score=33.83 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=35.8
Q ss_pred cccCHHHHHHHHHhcCCe-----eEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 584 RTLSSKMVMEIVCAFGPL-----KAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 584 ~~~teedL~e~Fsk~G~V-----~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
..++..+|..++...+.| -.|.|. ..|+||+-... .|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 457788888888877654 345553 45999988765 778899999999999999999765
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=75.07 E-value=2 Score=52.80 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=60.4
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCcc--CCeEEEEEEccc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV--GGQVLTAVQAVL 651 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~--~Gr~I~V~~a~~ 651 (967)
.+.++.|.+-.++.--|..+|++||.|.+++..++ -..|.|+|...+.|..|+.+|+|..+ -|-+.+|.+|.+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34555666667788899999999999999988776 56899999999999999999999764 677788888754
No 211
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=73.42 E-value=12 Score=35.68 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=40.2
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecC-CCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR-EKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~-skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
...+.+...|..++-++|..+...+-. .+..+ .-+..+. ++-.+.+.|.+.+.|..+.. +||..|.-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~--~i~~~------riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFRE--DIEHI------RIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccc--cEEEE------EEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334455555555555666655544432 11111 1122333 33348999999999999999 99988743
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.02 E-value=11 Score=43.81 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=52.1
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcE-EEEEEcCHHHHHHHHH-ccCceeec
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQ-AFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~-aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
...|+|-.+|..+|..||..|+-.|.. .|... .-+..+....| .+|.|.+.++|..+++ +||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~-----~I~~i---rivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIK-----QISDI---RIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhh-----hhhee---EEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 678999999999999999999987753 22221 22224444455 8999999999999999 99998864
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=72.86 E-value=8.7 Score=47.66 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=60.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee--ec
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF--SG 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l--~G 537 (967)
....+.++.|.+-+.|-.-|..+|..|| .|.+.++-+.-..|.|+|.+.+.|-.|+. |.|..+ -|
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg------------~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g 363 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYG------------SVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTG 363 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhc------------chhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccC
Confidence 4456788999999999999999999999 34667777788899999999999999999 999664 57
Q ss_pred ceeEEeCC
Q 002093 538 SILKIKRP 545 (967)
Q Consensus 538 r~l~V~rp 545 (967)
-+.+|..+
T Consensus 364 ~Ps~V~~a 371 (1007)
T KOG4574|consen 364 APSRVSFA 371 (1007)
T ss_pred CceeEEec
Confidence 67766543
No 214
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=72.38 E-value=8.6 Score=45.56 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=54.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHHh--cCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCC--CccCCeEEEEE
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCA--FGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNG--LKVGGQVLTAV 647 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk--~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG--~~~~Gr~I~V~ 647 (967)
.+.|.|.-||..+-.++|+.+|.. +-.+.+|.+..+ .--||.|.+..+|+.|.+.|.- ..|.|++|.+.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-----~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 355677899999999999999975 566777877543 3479999999999999987754 46888888654
No 215
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.15 E-value=3.5 Score=47.10 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=5.4
Q ss_pred ccccCCCCCccc
Q 002093 56 MDVSNIPGDCTI 67 (967)
Q Consensus 56 ~~~~~~~~~~~~ 67 (967)
..+++++-++-+
T Consensus 58 e~~g~~~k~~~L 69 (450)
T KOG3869|consen 58 EAVGNSKKNEGL 69 (450)
T ss_pred HHhccccccccc
Confidence 344455554433
No 216
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=70.05 E-value=7 Score=38.69 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCC
Q 002093 707 DVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTND 755 (967)
Q Consensus 707 DIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~ 755 (967)
-|-+..+.||.|++|.+.- +..|.|.|++..+|-+|+.+...+
T Consensus 106 sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 106 SVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred HHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcCC
Confidence 3455678999999999862 456889999999999999998764
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.87 E-value=10 Score=41.77 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=52.6
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEE-EEEc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT-AVQA 649 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~-V~~a 649 (967)
.=|.|-++|+.-. ..|..+|++||.|...... ..-.+-+|.|.+..+|.+||. .||..|+|..+. |..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~----~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP----SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC----CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 4567778876543 4678899999998765432 134589999999999999997 899999887754 6665
No 218
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=67.88 E-value=11 Score=34.00 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhC
Q 002093 706 EDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLT 753 (967)
Q Consensus 706 eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~Ln 753 (967)
.||.++|.+||.|- |.-+.+ +.|||...+.+.|..|+..+.
T Consensus 23 ~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 23 SDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred hhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 58999999999986 444432 468999999999999999986
No 219
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=67.86 E-value=2.9 Score=48.46 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCCCEEEEeCCCCcc-hHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 461 RPMRRLCVENLPLSA-SEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~-TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
...+.|-+.-.|+.+ |-.+|...|.+||. |.++.++-+--.|.|+|.+..+|-.|....+..|.++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~------------i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~ 437 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGE------------IENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNRF 437 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCc------------cccccccCchhhheeeeeccccccchhccccceecCce
Confidence 345566666677665 67889999999994 34555555556799999999999999999999999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|+|.|
T Consensus 438 iKl~w 442 (526)
T KOG2135|consen 438 IKLFW 442 (526)
T ss_pred eEEEE
Confidence 99986
No 220
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=67.46 E-value=21 Score=30.53 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC 529 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~ 529 (967)
...|+|.|+. +++.++|+.+|..|....+. ..+..- .-.-|-|.|.+.+.|..||.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~---------~~IEWI-dDtScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP---------FRIEWI-DDTSCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC---------ceEEEe-cCCcEEEEECCHHHHHHHHH
Confidence 3479999994 58888999999998321111 122211 13457899999999999996
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=66.73 E-value=18 Score=31.27 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 474 SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 474 ~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
.++-++|+..|..|+. . .|+.- ..|| ||.|.+..+|++|+. .+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~----~------~I~~d----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW----D------RIRDD----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc----c------eEEec----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999988873 1 11221 2333 899999999999999 9999888777654
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=65.36 E-value=62 Score=35.94 Aligned_cols=171 Identities=11% Similarity=0.140 Sum_probs=100.8
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC---------CCCCEEEEeecCcchHH----HHHHHhCC--Cc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED---------HEEPCAFIEYVDQLVTP----KAIAGLNG--LK 638 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~---------~skG~aFVeF~~~e~A~----~Al~~LnG--~~ 638 (967)
.+.|...|+...++--.+...|-+||+|++|+++.+.+ ....-+.+-|-+.+.|- ..++.|.- ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 35678889998888888889999999999999988752 12456788888887764 34555554 34
Q ss_pred cCCeEEEEEEcccCCCcCC--CCCCCCC--CCCCCCC-CCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHh
Q 002093 639 VGGQVLTAVQAVLDGSIMD--NSGNPPF--HGIPKHA-LPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECA 713 (967)
Q Consensus 639 ~~Gr~I~V~~a~~~~~~~~--~~~~~~~--~~i~~~~-~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~ 713 (967)
+....|++.+..-+-.... ......+ .-.+... .-....+|+.|+|.=. . .. .. ++++++--....
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~--~~---~~---~dl~~~kL~fL~ 165 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-D--PV---DK---DDLIEKKLPFLK 165 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-C--cc---ch---hHHHHHhhhhhc
Confidence 6778888887753221100 0101111 0000000 0112456777776321 1 11 11 112222112222
Q ss_pred cCC----CeEEEEEecC---CCCCcceeEEEEeCCHHHHHHHHHHhC
Q 002093 714 RFG----SVKSVNVVKY---GDSNISTIQACEGNENTASAGVGQNLT 753 (967)
Q Consensus 714 kFG----~V~~V~I~r~---~~g~~~G~gFVeF~~~e~A~~Ai~~Ln 753 (967)
.=+ -|++|.|+.- ...+...|+.++|-+...|.+.+..|.
T Consensus 166 ~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 166 NSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred cCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 223 3788888743 345667799999999999999988775
No 223
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=60.09 E-value=5.6 Score=47.16 Aligned_cols=7 Identities=29% Similarity=0.287 Sum_probs=3.6
Q ss_pred ccccccc
Q 002093 70 VSDDHKS 76 (967)
Q Consensus 70 ~~~~~~~ 76 (967)
|||||--
T Consensus 175 iSDYFNY 181 (538)
T KOG1049|consen 175 ISDYFNY 181 (538)
T ss_pred chhhhcc
Confidence 4555543
No 224
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=58.62 E-value=7.6 Score=47.07 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=4.3
Q ss_pred HHHHHHHhh
Q 002093 480 LMEFLNNFL 488 (967)
Q Consensus 480 L~~~F~~fG 488 (967)
|..|+.++.
T Consensus 118 L~~Ly~e~~ 126 (525)
T PF02956_consen 118 LQYLYDEHL 126 (525)
T ss_pred HHHHHHHHH
Confidence 444555443
No 225
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=53.98 E-value=9.4 Score=44.49 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002093 587 SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 653 (967)
Q Consensus 587 teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~ 653 (967)
+-.+|...|.+||.|..|.+-.. .--|.|+|.+..+|-.|-. .+|..|+++.|+|.|-.+..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 45789999999999999987332 4568999999999977764 89999999999999987644
No 226
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=51.55 E-value=32 Score=29.81 Aligned_cols=48 Identities=6% Similarity=-0.120 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 002093 706 EDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKG 761 (967)
Q Consensus 706 eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~ 761 (967)
+||+..+.+|+-. . |..+.+|. ||.|.+..+|+++..+.+|..|..-.
T Consensus 15 ~d~K~~Lr~y~~~-~--I~~d~tGf-----YIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 15 EDFKKRLRKYRWD-R--IRDDRTGF-----YIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred HHHHHHHhcCCcc-e--EEecCCEE-----EEEECChHHHHHHHHhcCCCEEEEEE
Confidence 6888889999743 2 33344443 69999999999999999999876544
No 227
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.39 E-value=37 Score=40.78 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcC----CCeEEEEEecCCCC-----------C--------
Q 002093 674 LLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARF----GSVKSVNVVKYGDS-----------N-------- 730 (967)
Q Consensus 674 ~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kF----G~V~~V~I~r~~~g-----------~-------- 730 (967)
..+.+|+.|-|+||-. ..+ -.+||..+|..| |.|.+|.|..-.-| -
T Consensus 169 ~~~~~T~RLAVvNMDW-d~v----------~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~ 237 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDW-DRV----------KAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPV 237 (650)
T ss_pred ccccccceeeEecccc-ccc----------cHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhcccc
Confidence 3456789999999822 111 135676666665 69999999652111 1
Q ss_pred -----------------------------cceeEEEEeCCHHHHHHHHHHhCCCccCCCccee
Q 002093 731 -----------------------------ISTIQACEGNENTASAGVGQNLTNDETNEKGERL 764 (967)
Q Consensus 731 -----------------------------~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v 764 (967)
-+-||.|+|.+.+.|......-.|.+|...+.++
T Consensus 238 e~~~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 238 EEYKESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred ccCcccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1247899999999999999999999998888775
No 228
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=50.51 E-value=1e+02 Score=33.96 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=5.6
Q ss_pred cccccccccch
Q 002093 43 KTKNLSENIKE 53 (967)
Q Consensus 43 ~~~~~~~~~~~ 53 (967)
|-|+|+...|=
T Consensus 17 keKKLmkqmKF 27 (354)
T KOG2146|consen 17 KEKKLMKQMKF 27 (354)
T ss_pred HHHHHHHhccc
Confidence 44555555543
No 229
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.41 E-value=5.2 Score=43.20 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCeEEEEEec-CC-----CCCcc-----ee---------EEEEeCCHHHHHHHHHHhCCCccCCC
Q 002093 706 EDVRLECARFGSVKSVNVVK-YG-----DSNIS-----TI---------QACEGNENTASAGVGQNLTNDETNEK 760 (967)
Q Consensus 706 eDIr~~f~kFG~V~~V~I~r-~~-----~g~~~-----G~---------gFVeF~~~e~A~~Ai~~LnG~~~~~r 760 (967)
+-|+..|+.||.|..|.||- ++ +|... || +||+|....--..||.+|.|+.+.-+
T Consensus 176 ~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk 250 (445)
T KOG2891|consen 176 DRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKK 250 (445)
T ss_pred HHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhh
Confidence 34789999999999999984 21 33322 22 36888888777889999999887533
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.99 E-value=55 Score=27.98 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecC
Q 002093 702 EEVLEDVRLECARFGSVKSVNVVKY 726 (967)
Q Consensus 702 eei~eDIr~~f~kFG~V~~V~I~r~ 726 (967)
+.|..+||+.|+.+|.|.-+-|...
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEccc
Confidence 5788999999999999987776543
No 231
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=37.22 E-value=24 Score=34.86 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=59.1
Q ss_pred CCcEEEEEEcCHHHHHHHHHccCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcc-cCH
Q 002093 510 EKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRT-LSS 588 (967)
Q Consensus 510 skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~-~te 588 (967)
..++..++|.+.+++..++......|.|..|.+.+.+....+. . ......+-=|-|.|||.. .++
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~----~----------~~~~~~~vWVri~glP~~~~~~ 119 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPS----E----------VKFEHIPVWVRIYGLPLHLWSE 119 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhccccccc----c----------cceeccchhhhhccCCHHHhhh
Confidence 4689999999999999999877778888888887543211110 0 000011234667899976 677
Q ss_pred HHHHHHHHhcCCeeEEEEe
Q 002093 589 KMVMEIVCAFGPLKAYHFE 607 (967)
Q Consensus 589 edL~e~Fsk~G~V~~v~l~ 607 (967)
+-|..+.+.+|.+..+...
T Consensus 120 ~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 120 EILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred HHHHHHHHhcCCeEEEEcC
Confidence 8899999999999887653
No 232
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.60 E-value=1.2e+02 Score=36.82 Aligned_cols=77 Identities=35% Similarity=0.459 Sum_probs=53.1
Q ss_pred CCCCEEEEeCCCC-cchHHHHHHHHHHhhhhcCcc------------------cccCCcCeeee----------------
Q 002093 461 RPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQ------------------HVHGSLPCIGC---------------- 505 (967)
Q Consensus 461 ~~~r~LyVgNLp~-~~TeedL~~~F~~fG~~~g~~------------------~v~~~~~v~~~---------------- 505 (967)
...++|-|-||.. .+.-.+|.-+|+.|.+..|.. .|++ |++..
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~G--P~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHG--PPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccC--ChhhhccccccCcccccchhh
Confidence 4568999999997 678999999999998765411 1111 10000
Q ss_pred ------------eecCCC-cEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 506 ------------VIQREK-GQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 506 ------------~~~~sk-G~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
..++-+ =||.|+|.+.+.|...+. .+|+.|....
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 001111 269999999999999999 9999996543
No 233
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=34.40 E-value=69 Score=38.60 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=17.7
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCeEEE
Q 002093 693 FSSLSELEVEEVLEDVRLECARFGSVKSV 721 (967)
Q Consensus 693 L~~i~~~~~eei~eDIr~~f~kFG~V~~V 721 (967)
|.+.++.||.++++-|++ .-|....|
T Consensus 761 LNs~nD~Wyg~LK~~iq~---QQ~~~vWv 786 (1027)
T KOG3580|consen 761 LNSANDSWYGSLKDTIQH---QQGEAVWV 786 (1027)
T ss_pred cCCCChhHHHHHHHHHHH---hcCceeEe
Confidence 444689999999887764 34655544
No 234
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=34.13 E-value=4.5e+02 Score=29.29 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.9
Q ss_pred ccccccc
Q 002093 66 TIENVSD 72 (967)
Q Consensus 66 ~~~~~~~ 72 (967)
|...|.|
T Consensus 49 Itkrvne 55 (354)
T KOG2146|consen 49 ITKRVNE 55 (354)
T ss_pred HHHHHHH
Confidence 3444443
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=34.09 E-value=1.6e+02 Score=32.48 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=37.3
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCH
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTA 521 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~ 521 (967)
..-|||+|||-++--.||+..+...+ .+ | +.+......|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~------~~----p-m~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRE------CT----P-MSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcC------CC----c-eeEeeecCCcceeEecCCc
Confidence 34599999999999999999997755 12 2 4455566789999999865
No 236
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=33.43 E-value=87 Score=27.38 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=33.7
Q ss_pred CcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEeC
Q 002093 473 LSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIKR 544 (967)
Q Consensus 473 ~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~r 544 (967)
..++..+|..+|...+.+.+ - .|-++.+ ...|+||+-... .|..++. |++..+.|++|.|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~---~----~IG~I~I--~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPG---R----DIGRIDI--FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-G---G----GEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCH---H----hEEEEEE--eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 46788899999976542222 1 2333333 356899988766 6778888 999999999999873
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=33.15 E-value=34 Score=35.35 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=53.2
Q ss_pred CceEEEcCCCcccC-----HHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCe-EEEEE
Q 002093 574 PHKIFIGGISRTLS-----SKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ-VLTAV 647 (967)
Q Consensus 574 ~~~L~V~nLp~~~t-----eedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr-~I~V~ 647 (967)
+..+.+.+++..+- ......+|..|.....+++++ +.+..-|-|.+++.|..|...+++..|.|. .++..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45566666664322 123455666666665555554 477888999999999999999999999888 78777
Q ss_pred EcccC
Q 002093 648 QAVLD 652 (967)
Q Consensus 648 ~a~~~ 652 (967)
++.+.
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 77654
No 238
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=31.19 E-value=21 Score=45.79 Aligned_cols=15 Identities=20% Similarity=-0.053 Sum_probs=7.4
Q ss_pred EEEecCHHHHHHHHH
Q 002093 925 FVEYMRAEASCMAAH 939 (967)
Q Consensus 925 yVkF~s~eaA~~A~~ 939 (967)
+|++.+.-+-+.|+.
T Consensus 955 ~ve~~~e~~vqra~~ 969 (997)
T KOG0334|consen 955 LVEGPDELSVQRAIE 969 (997)
T ss_pred hhhcchhHHHHHHHH
Confidence 566555444444443
No 239
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.13 E-value=42 Score=36.55 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=43.7
Q ss_pred CCceEEEcCCCc------------ccCHHHHHHHHHhcCCeeEEEEeec-C------CCC-----CCE---------EEE
Q 002093 573 SPHKIFIGGISR------------TLSSKMVMEIVCAFGPLKAYHFEVN-E------DHE-----EPC---------AFI 619 (967)
Q Consensus 573 ~~~~L~V~nLp~------------~~teedL~e~Fsk~G~V~~v~l~~d-~------~~s-----kG~---------aFV 619 (967)
.+.+|++.+||- -.+++-|...|+.||.|..|.|+.. + +.. .|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 356777777762 2457789999999999998877532 1 111 333 346
Q ss_pred eecCcchHHHHHHHhCCCcc
Q 002093 620 EYVDQLVTPKAIAGLNGLKV 639 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~ 639 (967)
+|....--..|+.+|-|+.+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66666666667777777654
No 240
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=29.87 E-value=43 Score=36.06 Aligned_cols=7 Identities=43% Similarity=0.605 Sum_probs=2.6
Q ss_pred EEEEeec
Q 002093 616 CAFIEYV 622 (967)
Q Consensus 616 ~aFVeF~ 622 (967)
.|.|+|.
T Consensus 218 HaviQyR 224 (293)
T KOG1882|consen 218 HAVIQYR 224 (293)
T ss_pred ceeeeee
Confidence 3333333
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.94 E-value=1.2e+02 Score=33.52 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=37.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCe-eEEEEeecCCCCCCEEEEeecCcc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPL-KAYHFEVNEDHEEPCAFIEYVDQL 625 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V-~~v~l~~d~~~skG~aFVeF~~~e 625 (967)
..-|+|+||+..+...||+..+.+.|.+ ..+.+. ...|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCcc
Confidence 4569999999999999999999998765 334442 14789999998754
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.90 E-value=1.1e+02 Score=31.59 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCC--CcceeEEEEeCCHHHHHHHHH
Q 002093 705 LEDVRLECARFGSVKSVNVVKYGDS--NISTIQACEGNENTASAGVGQ 750 (967)
Q Consensus 705 ~eDIr~~f~kFG~V~~V~I~r~~~g--~~~G~gFVeF~~~e~A~~Ai~ 750 (967)
++||.+.-+ |.+.+|..-+...+ ..+|..||+|.+.+.|...++
T Consensus 123 l~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 123 LDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 355555544 89999998765444 567889999999999977544
No 243
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.55 E-value=1.3e+02 Score=37.69 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=7.3
Q ss_pred cccCCCcccccccCC
Q 002093 18 SLADSNEGSAARTRP 32 (967)
Q Consensus 18 ~~~~~~~~~~~~~~~ 32 (967)
|.+|.+=++|+-+--
T Consensus 64 s~sn~d~pt~q~~q~ 78 (1102)
T KOG1924|consen 64 SASNNDYPTAQGLQD 78 (1102)
T ss_pred cccccCCcccccHHH
Confidence 334455555555444
No 244
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=26.67 E-value=54 Score=37.68 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=48.1
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
...|.|.+||+.+|+.+|.+-+++|-.-.....+. + -+... ..-.+.|||.|..+++...... ++|.+|..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~---~-a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFA---K-ADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheec---c-ccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 45899999999999999998888764322211111 0 01111 1124569999999999888888 99987744
No 245
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=25.57 E-value=69 Score=30.87 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchH
Q 002093 587 SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVT 627 (967)
Q Consensus 587 teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A 627 (967)
+.+.|.+.|..|.+++ ++.+.+.....|++.|+|...-.-
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHH
Confidence 4478999999999986 555555555689999999976543
No 246
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=24.64 E-value=67 Score=34.64 Aligned_cols=11 Identities=36% Similarity=0.618 Sum_probs=5.2
Q ss_pred ceeecceeEEe
Q 002093 533 CSFSGSILKIK 543 (967)
Q Consensus 533 ~~l~Gr~l~V~ 543 (967)
..|.|+.++|.
T Consensus 195 ~yL~gRerkIa 205 (293)
T KOG1882|consen 195 CYLDGRERKIA 205 (293)
T ss_pred eeecCceeeee
Confidence 33455555543
No 247
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=23.74 E-value=46 Score=29.37 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=12.4
Q ss_pred CCCCeEEEccccCCCCCC
Q 002093 676 KKPTEVLKLKNVFNPEGF 693 (967)
Q Consensus 676 ~~ps~vl~L~Nl~~~~~L 693 (967)
..+++|++|+|||+|.+.
T Consensus 51 ~~aS~C~lLkNMFDP~~E 68 (73)
T PF15519_consen 51 PIASRCFLLKNMFDPAEE 68 (73)
T ss_dssp S---SEEEEESSS-TTCG
T ss_pred CCCCceeeeecCCCcccc
Confidence 368999999999999876
No 248
>PF00906 Hepatitis_core: Hepatitis core antigen; InterPro: IPR002006 This entry represent the core domain of the viral capsid (HBcAg) from various Hepatitis B virus (HBV), which is a major human pathogen. The virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface.; GO: 0005198 structural molecule activity, 0009405 pathogenesis; PDB: 1HHH_C 2QIJ_C 3KXS_F 2G34_B 2G33_C 3OX8_F 3OXS_C 3OXR_C 1QGT_B.
Probab=23.08 E-value=28 Score=35.19 Aligned_cols=7 Identities=86% Similarity=1.175 Sum_probs=0.0
Q ss_pred CCcCCCC
Q 002093 286 RRRSRSR 292 (967)
Q Consensus 286 rrRSRSR 292 (967)
||||.|+
T Consensus 169 RRRSqS~ 175 (187)
T PF00906_consen 169 RRRSQSR 175 (187)
T ss_dssp -------
T ss_pred cccccCc
Confidence 3444444
No 249
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.40 E-value=1.9e+02 Score=33.43 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=46.4
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCC 530 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~l 530 (967)
..-.+-|-|-++|.....+||...|..|+. .|+ ++.+- ....||-.|.++..|..||.|
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~-kgf----------dIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGF----------DIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhc-CCc----------eeEEe-ecceeEEeecchHHHHHHhhc
Confidence 345688999999999999999999999984 332 22221 356799999999999999986
No 250
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=20.94 E-value=84 Score=35.45 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=14.1
Q ss_pred ccccCCCChhhhHhh----hcccccccc
Q 002093 27 AARTRPFSFDEIMIR----RKTKNLSEN 50 (967)
Q Consensus 27 ~~~~~~~~~~~~~~~----~~~~~~~~~ 50 (967)
|.=-|-|+|.=|+|+ -|+-.|+.+
T Consensus 153 a~~G~~FkVkWiRl~eLpFqkt~hL~NP 180 (441)
T KOG1902|consen 153 AMLGGVFKVKWIRLRELPFQKTAHLTNP 180 (441)
T ss_pred cccCceeeEeEEeeccccchhhhhcCCc
Confidence 555577777777765 345455443
Done!