Query 002093
Match_columns 967
No_of_seqs 565 out of 3263
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.4E-35 4.7E-40 324.7 26.5 241 461-769 20-263 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-35 5.4E-40 325.6 23.9 249 459-768 37-289 (292)
3 2yh0_A Splicing factor U2AF 65 100.0 1.6E-28 5.4E-33 253.2 22.0 192 461-653 2-195 (198)
4 2g4b_A Splicing factor U2AF 65 100.0 9.7E-28 3.3E-32 241.7 19.7 169 461-650 2-172 (172)
5 4f02_A Polyadenylate-binding p 100.0 4.8E-28 1.6E-32 254.4 14.8 168 461-652 13-181 (213)
6 1fje_B Nucleolin RBD12, protei 99.9 1.9E-26 6.4E-31 233.4 17.8 165 460-652 10-174 (175)
7 3smz_A Protein raver-1, ribonu 99.9 1.4E-25 4.7E-30 245.3 23.0 152 573-768 21-173 (284)
8 1l3k_A Heterogeneous nuclear r 99.9 2.4E-26 8.2E-31 236.5 15.3 174 460-654 10-185 (196)
9 3md3_A Nuclear and cytoplasmic 99.9 4.1E-26 1.4E-30 227.8 16.0 162 464-650 1-165 (166)
10 2ghp_A U4/U6 snRNA-associated 99.9 6.5E-26 2.2E-30 248.9 18.7 156 572-768 39-195 (292)
11 2qfj_A FBP-interacting repress 99.9 3.7E-26 1.3E-30 238.7 15.8 179 461-654 26-207 (216)
12 1b7f_A Protein (SXL-lethal pro 99.9 9.5E-26 3.2E-30 226.0 16.0 162 462-649 2-168 (168)
13 1fxl_A Paraneoplastic encephal 99.9 1.6E-25 5.4E-30 223.7 16.3 161 463-649 2-167 (167)
14 3nmr_A Cugbp ELAV-like family 99.9 3.6E-25 1.2E-29 223.1 14.7 163 462-649 2-174 (175)
15 2cjk_A Nuclear polyadenylated 99.9 8.3E-26 2.8E-30 226.5 9.9 163 462-652 2-166 (167)
16 1b7f_A Protein (SXL-lethal pro 99.9 9.8E-24 3.3E-28 211.3 21.1 161 573-766 2-167 (168)
17 3tyt_A Heterogeneous nuclear r 99.9 2.9E-24 1E-28 224.7 17.6 176 462-649 3-204 (205)
18 3pgw_A U1-A; protein-RNA compl 99.9 6.5E-24 2.2E-28 231.8 20.8 180 459-650 5-281 (282)
19 3md3_A Nuclear and cytoplasmic 99.9 6E-24 2.1E-28 212.0 18.6 162 575-767 1-164 (166)
20 1fxl_A Paraneoplastic encephal 99.9 1.2E-23 4.3E-28 209.9 20.3 160 574-766 2-164 (167)
21 4f02_A Polyadenylate-binding p 99.9 3.3E-24 1.1E-28 225.2 16.5 165 573-769 14-180 (213)
22 2adc_A Polypyrimidine tract-bi 99.9 1.4E-23 4.8E-28 222.9 21.0 176 461-651 32-227 (229)
23 1qm9_A Polypyrimidine tract-bi 99.9 1E-23 3.5E-28 218.0 15.5 174 463-651 3-196 (198)
24 3nmr_A Cugbp ELAV-like family 99.9 4.8E-23 1.7E-27 207.5 18.6 161 574-766 3-173 (175)
25 3sde_A Paraspeckle component 1 99.9 1.7E-23 5.8E-28 226.7 15.7 154 461-652 20-179 (261)
26 1l3k_A Heterogeneous nuclear r 99.9 9.9E-23 3.4E-27 209.4 18.3 170 572-770 11-183 (196)
27 2qfj_A FBP-interacting repress 99.9 1.1E-22 3.9E-27 212.3 18.7 174 574-769 28-204 (216)
28 3tyt_A Heterogeneous nuclear r 99.9 8.2E-23 2.8E-27 213.7 17.4 175 573-763 3-196 (205)
29 2yh0_A Splicing factor U2AF 65 99.9 4.2E-22 1.4E-26 205.1 21.1 178 574-769 4-193 (198)
30 2g4b_A Splicing factor U2AF 65 99.9 2.1E-22 7.3E-27 202.6 17.3 156 574-767 4-171 (172)
31 3pgw_A U1-A; protein-RNA compl 99.9 1.1E-21 3.7E-26 214.2 21.8 179 572-767 7-280 (282)
32 2adc_A Polypyrimidine tract-bi 99.9 1.2E-21 4.2E-26 207.9 20.8 178 572-768 32-226 (229)
33 1qm9_A Polypyrimidine tract-bi 99.9 7.7E-22 2.6E-26 203.9 18.3 176 574-768 3-195 (198)
34 2cjk_A Nuclear polyadenylated 99.9 1.7E-22 5.8E-27 202.3 12.0 159 574-768 3-164 (167)
35 3sde_A Paraspeckle component 1 99.9 2.4E-21 8.3E-26 209.7 17.4 154 572-768 20-177 (261)
36 1fje_B Nucleolin RBD12, protei 99.9 6.6E-22 2.3E-26 199.9 10.9 162 571-768 10-172 (175)
37 2kn4_A Immunoglobulin G-bindin 99.7 2.4E-17 8.1E-22 164.5 14.5 140 508-654 10-152 (158)
38 2i2y_A Fusion protein consists 99.7 4E-17 1.4E-21 161.7 11.4 137 508-652 10-148 (150)
39 3v4m_A Splicing factor U2AF 65 99.7 2.1E-16 7.3E-21 147.3 10.6 91 676-768 2-95 (105)
40 4f25_A Polyadenylate-binding p 99.6 1.2E-15 4.2E-20 144.3 8.6 107 463-589 5-112 (115)
41 3s6e_A RNA-binding protein 39; 99.6 2.5E-15 8.5E-20 142.1 10.2 89 676-769 4-92 (114)
42 4f25_A Polyadenylate-binding p 99.6 2.3E-15 7.7E-20 142.5 9.1 81 573-653 4-84 (115)
43 2kn4_A Immunoglobulin G-bindin 99.6 6.1E-15 2.1E-19 147.0 12.0 147 603-769 2-149 (158)
44 4fxv_A ELAV-like protein 1; RN 99.6 5.4E-15 1.9E-19 136.2 10.0 79 573-651 18-98 (99)
45 3s6e_A RNA-binding protein 39; 99.6 5.4E-16 1.8E-20 146.6 1.8 90 858-967 3-101 (114)
46 2i2y_A Fusion protein consists 99.5 5.1E-14 1.7E-18 139.3 12.4 142 606-769 5-147 (150)
47 2pe8_A Splicing factor 45; RRM 99.5 4.2E-14 1.4E-18 131.8 9.8 86 676-768 5-92 (105)
48 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.3E-13 4.5E-18 127.2 13.0 83 572-654 13-95 (103)
49 3ue2_A Poly(U)-binding-splicin 99.5 2.5E-14 8.7E-19 136.0 8.0 85 677-768 18-107 (118)
50 2lea_A Serine/arginine-rich sp 99.5 1.8E-14 6E-19 140.5 6.8 122 512-654 5-129 (135)
51 3pgw_S U1-70K; protein-RNA com 99.5 1.5E-14 5.1E-19 167.6 6.9 82 572-653 100-183 (437)
52 4fxv_A ELAV-like protein 1; RN 99.5 2.9E-14 1E-18 131.3 7.5 77 462-544 18-95 (99)
53 2lxi_A RNA-binding protein 10; 99.5 2.5E-14 8.6E-19 129.6 7.0 80 575-654 2-85 (91)
54 2hzc_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 123.6 10.0 84 461-545 4-87 (87)
55 2cq3_A RNA-binding protein 9; 99.5 2.1E-13 7.2E-18 125.9 12.2 84 571-654 12-95 (103)
56 3s8s_A Histone-lysine N-methyl 99.5 1.1E-13 3.8E-18 130.0 9.9 81 572-652 4-86 (110)
57 2dgx_A KIAA0430 protein; RRM d 99.5 1.5E-13 5.2E-18 125.5 10.6 80 573-653 8-91 (96)
58 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1E-13 3.5E-18 139.5 10.1 139 516-654 11-154 (165)
59 2wbr_A GW182, gawky, LD47780P; 99.5 1.4E-13 4.7E-18 122.8 9.5 72 463-546 7-79 (89)
60 3lqv_A PRE-mRNA branch site pr 99.5 1.4E-13 4.7E-18 129.7 9.8 103 461-600 6-109 (115)
61 2dgv_A HnRNP M, heterogeneous 99.5 1.3E-13 4.3E-18 124.4 9.0 82 572-653 6-87 (92)
62 2lxi_A RNA-binding protein 10; 99.5 1.1E-13 3.8E-18 125.3 8.6 77 463-545 1-80 (91)
63 1whw_A Hypothetical protein ri 99.5 3.5E-13 1.2E-17 123.3 11.7 83 572-654 6-90 (99)
64 3bs9_A Nucleolysin TIA-1 isofo 99.4 1.5E-13 5.2E-18 122.5 8.9 79 573-651 5-85 (87)
65 2err_A Ataxin-2-binding protei 99.4 1.8E-13 6.1E-18 128.2 9.7 82 571-652 26-107 (109)
66 3md1_A Nuclear and cytoplasmic 99.4 2.2E-13 7.4E-18 120.4 9.7 78 575-652 2-81 (83)
67 3lqv_A PRE-mRNA branch site pr 99.4 1.5E-13 5E-18 129.6 9.1 81 571-652 5-85 (115)
68 2cpf_A RNA binding motif prote 99.4 1.7E-13 5.8E-18 125.2 9.1 82 573-654 4-90 (98)
69 3mdf_A Peptidyl-prolyl CIS-tra 99.4 2.6E-13 8.8E-18 120.5 10.0 78 572-649 5-84 (85)
70 2lkz_A RNA-binding protein 5; 99.4 1.4E-13 4.6E-18 126.0 8.3 78 573-650 8-93 (95)
71 2dgo_A Cytotoxic granule-assoc 99.4 5.8E-13 2E-17 125.4 12.9 85 571-655 12-98 (115)
72 2cph_A RNA binding motif prote 99.4 3.7E-13 1.3E-17 124.9 11.2 83 572-654 13-99 (107)
73 2dnm_A SRP46 splicing factor; 99.4 3.4E-13 1.2E-17 124.4 10.9 83 572-654 11-95 (103)
74 4a8x_A RNA-binding protein wit 99.4 2.3E-13 8E-18 121.4 9.2 80 573-652 3-85 (88)
75 1sjq_A Polypyrimidine tract-bi 99.4 1.9E-13 6.5E-18 127.0 8.9 80 571-654 13-94 (105)
76 2wbr_A GW182, gawky, LD47780P; 99.4 1.6E-13 5.6E-18 122.3 8.0 73 574-650 7-79 (89)
77 2lkz_A RNA-binding protein 5; 99.4 1E-13 3.5E-18 126.8 6.8 82 460-545 6-92 (95)
78 2dnz_A Probable RNA-binding pr 99.4 3.9E-13 1.3E-17 122.0 10.6 83 572-654 3-87 (95)
79 2x1f_A MRNA 3'-END-processing 99.4 3.3E-13 1.1E-17 123.0 10.1 81 574-654 2-84 (96)
80 2d9p_A Polyadenylate-binding p 99.4 2.7E-13 9.4E-18 125.1 9.5 84 571-654 12-95 (103)
81 1x5t_A Splicing factor 3B subu 99.4 3.3E-13 1.1E-17 122.7 9.9 82 573-654 4-88 (96)
82 3p5t_L Cleavage and polyadenyl 99.4 5.7E-14 2E-18 126.7 4.7 80 575-654 2-85 (90)
83 1x5s_A Cold-inducible RNA-bind 99.4 4.2E-13 1.4E-17 123.5 10.6 84 571-654 9-94 (102)
84 2do4_A Squamous cell carcinoma 99.4 3.9E-13 1.3E-17 123.3 10.4 82 572-653 15-97 (100)
85 2cqb_A Peptidyl-prolyl CIS-tra 99.4 3.5E-13 1.2E-17 124.1 10.0 84 571-654 9-94 (102)
86 1x5u_A Splicing factor 3B subu 99.4 5.2E-13 1.8E-17 123.6 11.1 84 571-654 12-97 (105)
87 3s8s_A Histone-lysine N-methyl 99.4 1.4E-13 4.9E-18 129.2 7.1 79 461-545 4-83 (110)
88 2dgs_A DAZ-associated protein 99.4 5.5E-13 1.9E-17 122.1 10.7 82 572-654 8-91 (99)
89 2cq0_A Eukaryotic translation 99.4 3.4E-13 1.2E-17 124.5 9.3 84 571-654 12-97 (103)
90 2cqc_A Arginine/serine-rich sp 99.4 4.7E-13 1.6E-17 121.4 9.8 81 571-651 12-94 (95)
91 2fy1_A RNA-binding motif prote 99.4 7.3E-13 2.5E-17 125.4 11.5 83 572-654 5-88 (116)
92 2e5h_A Zinc finger CCHC-type a 99.4 4.7E-13 1.6E-17 121.2 9.7 79 571-649 13-93 (94)
93 3ns6_A Eukaryotic translation 99.4 2E-13 7E-18 125.7 7.3 78 574-651 6-92 (100)
94 1sjq_A Polypyrimidine tract-bi 99.4 4.3E-13 1.5E-17 124.6 9.4 75 460-546 13-90 (105)
95 3ucg_A Polyadenylate-binding p 99.4 6.1E-13 2.1E-17 119.1 10.0 78 574-652 6-85 (89)
96 2cpz_A CUG triplet repeat RNA- 99.4 7.9E-13 2.7E-17 124.6 11.2 83 572-654 23-107 (115)
97 2hvz_A Splicing factor, argini 99.4 2.9E-13 1E-17 124.4 8.0 98 464-583 1-100 (101)
98 1p27_B RNA-binding protein 8A; 99.4 4.9E-13 1.7E-17 124.0 9.6 81 573-653 22-104 (106)
99 1x4a_A Splicing factor, argini 99.4 9.8E-13 3.3E-17 122.7 11.5 83 571-654 19-101 (109)
100 1jmt_A Splicing factor U2AF 35 99.4 6E-13 2E-17 123.7 10.0 89 679-767 1-103 (104)
101 2nlw_A Eukaryotic translation 99.4 5.3E-13 1.8E-17 124.0 9.5 79 573-651 14-99 (105)
102 2la6_A RNA-binding protein FUS 99.4 6E-13 2.1E-17 121.9 9.7 79 571-649 10-98 (99)
103 2khc_A Testis-specific RNP-typ 99.4 3.6E-13 1.2E-17 127.4 8.4 79 460-544 37-116 (118)
104 3p5t_L Cleavage and polyadenyl 99.4 1.3E-13 4.4E-18 124.3 5.1 77 464-546 2-81 (90)
105 2dnh_A Bruno-like 5, RNA bindi 99.4 8.2E-13 2.8E-17 122.2 10.6 83 572-654 13-99 (105)
106 2hvz_A Splicing factor, argini 99.4 4.5E-13 1.5E-17 123.2 8.7 77 575-654 1-77 (101)
107 1fj7_A Nucleolin RBD1, protein 99.4 7E-13 2.4E-17 121.9 10.0 79 461-546 15-93 (101)
108 2div_A TRNA selenocysteine ass 99.4 5.1E-13 1.7E-17 122.3 8.9 82 572-653 7-95 (99)
109 1u6f_A Tcubp1, RNA-binding pro 99.4 7.8E-13 2.7E-17 128.9 10.8 82 459-546 38-120 (139)
110 1x4h_A RNA-binding protein 28; 99.4 9.7E-13 3.3E-17 122.9 10.9 83 572-654 13-103 (111)
111 3r27_A HnRNP L, heterogeneous 99.4 6.6E-13 2.2E-17 122.2 9.5 77 572-652 19-97 (100)
112 3mdf_A Peptidyl-prolyl CIS-tra 99.4 3.9E-13 1.3E-17 119.3 7.7 78 461-544 5-83 (85)
113 1oo0_B CG8781-PA, drosophila Y 99.4 8E-13 2.7E-17 123.4 10.0 81 573-653 25-107 (110)
114 1s79_A Lupus LA protein; RRM, 99.4 1.4E-13 4.8E-18 127.7 4.7 82 461-549 9-90 (103)
115 2ywk_A Putative RNA-binding pr 99.4 5.8E-13 2E-17 120.8 8.7 79 572-650 14-93 (95)
116 2jrs_A RNA-binding protein 39; 99.4 7.8E-13 2.7E-17 123.6 9.6 82 571-652 23-106 (108)
117 2cpi_A CCR4-NOT transcription 99.4 3.8E-13 1.3E-17 126.3 7.3 82 572-653 13-102 (111)
118 1x5t_A Splicing factor 3B subu 99.4 6.9E-13 2.4E-17 120.6 8.8 80 461-545 3-83 (96)
119 3r27_A HnRNP L, heterogeneous 99.4 6.8E-13 2.3E-17 122.1 8.7 73 460-544 18-93 (100)
120 1x4d_A Matrin 3; structural ge 99.4 4.3E-13 1.5E-17 124.2 7.4 78 572-653 13-93 (102)
121 2cqc_A Arginine/serine-rich sp 99.4 5.4E-13 1.9E-17 120.9 7.9 79 461-545 13-92 (95)
122 2ytc_A PRE-mRNA-splicing facto 99.4 8.3E-13 2.8E-17 117.2 9.0 73 460-544 9-83 (85)
123 2dnq_A RNA-binding protein 4B; 99.4 1.4E-12 4.9E-17 117.3 10.6 77 572-654 6-82 (90)
124 2dhg_A TRNA selenocysteine ass 99.4 7.7E-13 2.6E-17 122.2 9.0 83 572-654 7-92 (104)
125 3ulh_A THO complex subunit 4; 99.4 8.4E-13 2.9E-17 122.6 9.3 80 571-650 26-106 (107)
126 1wi8_A EIF-4B, eukaryotic tran 99.4 6.9E-13 2.4E-17 122.7 8.6 81 572-654 13-96 (104)
127 2cpz_A CUG triplet repeat RNA- 99.4 7.3E-13 2.5E-17 124.8 8.9 80 461-546 23-103 (115)
128 2ad9_A Polypyrimidine tract-bi 99.4 9E-13 3.1E-17 125.3 9.5 79 572-654 29-109 (119)
129 2dgp_A Bruno-like 4, RNA bindi 99.4 1.1E-12 3.8E-17 121.5 10.0 84 571-654 10-98 (106)
130 2la6_A RNA-binding protein FUS 99.4 4.6E-13 1.6E-17 122.8 7.2 84 461-544 11-97 (99)
131 2krb_A Eukaryotic translation 99.4 2.8E-13 9.4E-18 119.6 5.5 72 575-646 2-80 (81)
132 2kt5_A RNA and export factor-b 99.4 2.1E-12 7.1E-17 123.4 12.1 84 571-654 32-116 (124)
133 2x1f_A MRNA 3'-END-processing 99.4 6.4E-13 2.2E-17 121.1 8.1 80 462-547 1-81 (96)
134 3ex7_B RNA-binding protein 8A; 99.4 7.6E-13 2.6E-17 126.7 9.0 82 573-654 21-104 (126)
135 2do0_A HnRNP M, heterogeneous 99.4 1.9E-12 6.6E-17 121.5 11.6 83 572-654 13-96 (114)
136 1x5u_A Splicing factor 3B subu 99.4 7.9E-13 2.7E-17 122.3 8.8 80 460-545 12-92 (105)
137 3n9u_C Cleavage and polyadenyl 99.4 4.1E-13 1.4E-17 134.0 7.3 79 461-545 53-134 (156)
138 2la4_A Nuclear and cytoplasmic 99.4 4.9E-13 1.7E-17 122.9 7.3 73 461-545 25-98 (101)
139 1x4g_A Nucleolysin TIAR; struc 99.4 1.5E-12 5.2E-17 121.5 10.8 79 572-654 23-101 (109)
140 1x4c_A Splicing factor, argini 99.4 1.3E-12 4.5E-17 121.9 10.3 78 572-654 13-95 (108)
141 3s7r_A Heterogeneous nuclear r 99.4 1.4E-12 4.9E-17 116.3 10.1 77 572-649 9-87 (87)
142 2mss_A Protein (musashi1); RNA 99.4 4.7E-13 1.6E-17 116.0 6.7 74 465-544 1-74 (75)
143 2cpe_A RNA-binding protein EWS 99.4 1.1E-12 3.7E-17 123.2 9.7 88 460-547 12-102 (113)
144 3s7r_A Heterogeneous nuclear r 99.4 4.3E-13 1.5E-17 119.8 6.6 79 460-544 8-86 (87)
145 2dnz_A Probable RNA-binding pr 99.4 7.2E-13 2.5E-17 120.2 8.1 81 461-547 3-84 (95)
146 1why_A Hypothetical protein ri 99.4 1.3E-12 4.4E-17 119.3 9.8 79 571-653 14-94 (97)
147 2cpf_A RNA binding motif prote 99.4 7.9E-13 2.7E-17 120.8 8.4 81 461-547 3-87 (98)
148 1s79_A Lupus LA protein; RRM, 99.4 5.9E-13 2E-17 123.5 7.5 78 573-651 10-88 (103)
149 1whw_A Hypothetical protein ri 99.4 9E-13 3.1E-17 120.6 8.6 80 461-546 6-86 (99)
150 3ns6_A Eukaryotic translation 99.4 4.3E-13 1.5E-17 123.5 6.4 78 462-545 5-90 (100)
151 2dgp_A Bruno-like 4, RNA bindi 99.4 1.2E-12 4.1E-17 121.3 9.4 81 460-546 10-94 (106)
152 2cqb_A Peptidyl-prolyl CIS-tra 99.4 8.5E-13 2.9E-17 121.5 8.2 81 460-546 9-90 (102)
153 2cpj_A Non-POU domain-containi 99.4 1.4E-12 4.8E-17 119.5 9.7 79 572-654 13-91 (99)
154 2cqp_A RNA-binding protein 12; 99.4 8.3E-13 2.9E-17 120.6 8.1 79 461-545 13-92 (98)
155 1x4h_A RNA-binding protein 28; 99.4 1.2E-12 3.9E-17 122.4 9.3 81 460-546 12-99 (111)
156 2e5h_A Zinc finger CCHC-type a 99.4 6.9E-13 2.4E-17 120.1 7.5 78 461-544 14-92 (94)
157 2dgo_A Cytotoxic granule-assoc 99.4 1.2E-12 4.3E-17 123.1 9.5 82 460-547 12-94 (115)
158 2cq4_A RNA binding motif prote 99.4 1.1E-12 3.9E-17 123.3 9.1 79 574-653 25-105 (114)
159 2dng_A Eukaryotic translation 99.4 1.5E-12 5.3E-17 120.1 9.9 82 571-654 12-95 (103)
160 3n9u_C Cleavage and polyadenyl 99.4 9.2E-13 3.1E-17 131.5 8.9 79 573-651 54-136 (156)
161 2cpe_A RNA-binding protein EWS 99.4 1.6E-12 5.6E-17 121.9 10.2 83 572-654 13-105 (113)
162 2kxn_B Transformer-2 protein h 99.4 7.5E-13 2.6E-17 127.9 8.0 83 571-653 43-127 (129)
163 2cqi_A Nucleolysin TIAR; RNA r 99.4 2.4E-12 8.2E-17 118.7 11.1 80 459-546 11-91 (103)
164 2jvr_A Nucleolar protein 3; RN 99.4 9.5E-13 3.2E-17 123.8 8.4 79 571-651 25-104 (111)
165 1x4d_A Matrin 3; structural ge 99.4 6.2E-13 2.1E-17 123.1 7.0 75 461-547 13-91 (102)
166 2dgs_A DAZ-associated protein 99.4 8E-13 2.7E-17 121.0 7.7 80 461-546 8-87 (99)
167 2cqd_A RNA-binding region cont 99.4 3E-12 1E-16 120.8 11.8 82 572-654 15-98 (116)
168 1x5s_A Cold-inducible RNA-bind 99.4 9.7E-13 3.3E-17 121.1 8.2 80 460-545 9-89 (102)
169 3bs9_A Nucleolysin TIA-1 isofo 99.4 5.4E-13 1.8E-17 118.9 6.3 77 462-544 5-82 (87)
170 2mss_A Protein (musashi1); RNA 99.4 5.1E-13 1.8E-17 115.8 5.9 73 576-649 1-75 (75)
171 2cq1_A PTB-like protein L; RRM 99.4 1.5E-12 5.1E-17 120.4 9.3 79 572-654 13-93 (101)
172 2khc_A Testis-specific RNP-typ 99.4 1.5E-12 5E-17 123.2 9.5 78 572-649 38-117 (118)
173 1p1t_A Cleavage stimulation fa 99.4 9.8E-13 3.3E-17 121.4 8.1 81 574-654 8-90 (104)
174 2jrs_A RNA-binding protein 39; 99.4 7.4E-13 2.5E-17 123.8 7.3 80 460-545 23-103 (108)
175 2dgt_A RNA-binding protein 30; 99.4 3.5E-12 1.2E-16 115.2 11.5 78 571-654 7-84 (92)
176 2cph_A RNA binding motif prote 99.4 1.1E-12 3.7E-17 121.7 8.3 81 460-546 12-95 (107)
177 2div_A TRNA selenocysteine ass 99.4 9.3E-13 3.2E-17 120.5 7.7 79 461-545 7-91 (99)
178 2cq1_A PTB-like protein L; RRM 99.4 1.5E-12 5.1E-17 120.4 9.1 75 460-546 12-89 (101)
179 1u6f_A Tcubp1, RNA-binding pro 99.4 3.1E-12 1E-16 124.6 11.8 84 571-654 39-124 (139)
180 2dh8_A DAZ-associated protein 99.4 1.9E-12 6.4E-17 119.9 9.7 83 571-654 13-97 (105)
181 2dnm_A SRP46 splicing factor; 99.4 5.7E-13 2E-17 122.9 6.2 80 461-546 11-91 (103)
182 2e5j_A Methenyltetrahydrofolat 99.4 1.9E-12 6.5E-17 118.2 9.6 79 572-653 17-95 (97)
183 2dgw_A Probable RNA-binding pr 99.4 1.9E-12 6.5E-17 116.6 9.5 80 572-653 8-88 (91)
184 2ek1_A RNA-binding protein 12; 99.4 7.9E-13 2.7E-17 120.0 6.9 78 462-545 14-92 (95)
185 1x4e_A RNA binding motif, sing 99.4 2.2E-13 7.5E-18 121.1 3.2 79 461-545 3-82 (85)
186 3md1_A Nuclear and cytoplasmic 99.3 7.4E-13 2.5E-17 116.9 6.5 76 464-545 2-78 (83)
187 1wex_A Hypothetical protein (r 99.3 2.4E-12 8.2E-17 119.6 10.2 77 573-653 14-92 (104)
188 2ytc_A PRE-mRNA-splicing facto 99.3 1.9E-12 6.4E-17 115.0 9.1 74 572-649 10-84 (85)
189 2dnp_A RNA-binding protein 14; 99.3 3.3E-12 1.1E-16 114.9 10.8 77 572-654 7-83 (90)
190 2cpx_A Hypothetical protein FL 99.3 2.3E-12 8E-17 121.2 10.1 80 461-546 23-103 (115)
191 2xnq_A Nuclear polyadenylated 99.3 2.9E-12 1E-16 117.3 10.3 76 571-652 19-95 (97)
192 2jvr_A Nucleolar protein 3; RN 99.3 1.7E-12 5.8E-17 122.1 8.9 75 461-545 26-102 (111)
193 3ucg_A Polyadenylate-binding p 99.3 9.6E-13 3.3E-17 117.8 6.9 77 463-545 6-82 (89)
194 2ywk_A Putative RNA-binding pr 99.3 8.8E-13 3E-17 119.6 6.8 79 460-545 13-92 (95)
195 1wex_A Hypothetical protein (r 99.3 1.7E-12 5.8E-17 120.7 8.8 75 460-546 12-89 (104)
196 2nlw_A Eukaryotic translation 99.3 1.2E-12 4.1E-17 121.5 7.8 80 461-548 13-100 (105)
197 1p27_B RNA-binding protein 8A; 99.3 8.2E-13 2.8E-17 122.4 6.6 79 461-545 21-100 (106)
198 2cq0_A Eukaryotic translation 99.3 8.2E-13 2.8E-17 121.9 6.4 81 460-546 12-93 (103)
199 2m2b_A RNA-binding protein 10; 99.3 1.7E-12 5.7E-17 125.6 8.9 82 572-654 21-110 (131)
200 2cpj_A Non-POU domain-containi 99.3 1.2E-12 4.2E-17 119.9 7.5 75 460-546 12-87 (99)
201 2dit_A HIV TAT specific factor 99.3 1.4E-12 4.8E-17 122.6 7.9 90 676-769 12-101 (112)
202 2a3j_A U1 small nuclear ribonu 99.3 2.2E-12 7.6E-17 124.2 9.5 80 573-653 28-111 (127)
203 2krb_A Eukaryotic translation 99.3 8.7E-13 3E-17 116.3 6.1 71 464-542 2-80 (81)
204 2dgu_A Heterogeneous nuclear r 99.3 4.1E-12 1.4E-16 117.3 10.9 77 572-654 9-85 (103)
205 2dnh_A Bruno-like 5, RNA bindi 99.3 1.6E-12 5.4E-17 120.3 8.0 80 460-546 12-95 (105)
206 2jvo_A Nucleolar protein 3; nu 99.3 2.3E-12 7.7E-17 120.5 9.1 76 572-653 29-104 (108)
207 2db1_A Heterogeneous nuclear r 99.3 1.3E-12 4.3E-17 124.2 7.5 81 461-545 15-95 (118)
208 2cqp_A RNA-binding protein 12; 99.3 1.2E-12 4.2E-17 119.5 7.1 80 572-651 13-94 (98)
209 2la4_A Nuclear and cytoplasmic 99.3 1.8E-12 6E-17 119.2 8.0 75 573-651 26-100 (101)
210 2e5j_A Methenyltetrahydrofolat 99.3 2.8E-12 9.7E-17 117.1 9.3 74 461-545 17-91 (97)
211 1uaw_A Mouse-musashi-1; RNP-ty 99.3 1.4E-12 4.7E-17 113.5 6.9 74 575-649 1-76 (77)
212 4a8x_A RNA-binding protein wit 99.3 1.8E-12 6.2E-17 115.6 7.8 77 462-544 3-81 (88)
213 2cpy_A RNA-binding protein 12; 99.3 1.2E-12 3.9E-17 123.5 6.8 79 460-545 12-91 (114)
214 1x4a_A Splicing factor, argini 99.3 4.8E-12 1.6E-16 118.0 10.9 79 460-547 19-98 (109)
215 2j76_E EIF-4B, EIF4B, eukaryot 99.3 6.3E-13 2.2E-17 122.3 4.9 80 571-652 16-98 (100)
216 1oo0_B CG8781-PA, drosophila Y 99.3 1.6E-12 5.5E-17 121.4 7.7 78 461-544 24-102 (110)
217 2ek1_A RNA-binding protein 12; 99.3 7.7E-13 2.6E-17 120.0 5.3 78 573-650 14-93 (95)
218 2ki2_A SS-DNA binding protein 99.3 5.2E-13 1.8E-17 120.0 4.1 79 575-654 2-82 (90)
219 2m2b_A RNA-binding protein 10; 99.3 1.6E-12 5.4E-17 125.7 7.8 82 460-546 20-106 (131)
220 2dis_A Unnamed protein product 99.3 2.4E-12 8.3E-17 119.9 8.8 82 573-654 7-94 (109)
221 1x4f_A Matrin 3; structural ge 99.3 9.8E-13 3.3E-17 123.7 6.0 76 460-547 22-101 (112)
222 2ad9_A Polypyrimidine tract-bi 99.3 1.7E-12 5.9E-17 123.3 7.7 74 461-546 29-105 (119)
223 2do4_A Squamous cell carcinoma 99.3 1.7E-12 5.9E-17 119.0 7.5 78 461-545 15-93 (100)
224 1h2v_Z 20 kDa nuclear CAP bind 99.3 3.7E-12 1.3E-16 126.7 10.4 82 572-653 37-120 (156)
225 1why_A Hypothetical protein ri 99.3 3.4E-12 1.2E-16 116.4 9.3 73 461-545 15-90 (97)
226 2jwn_A Embryonic polyadenylate 99.3 3E-12 1E-16 122.2 9.2 79 574-653 36-116 (124)
227 2rs2_A Musashi-1, RNA-binding 99.3 3.1E-12 1.1E-16 119.7 9.1 81 572-653 23-105 (109)
228 2dnq_A RNA-binding protein 4B; 99.3 4.8E-12 1.6E-16 113.8 10.1 73 461-547 6-79 (90)
229 2cpd_A Apobec-1 stimulating pr 99.3 9.5E-12 3.3E-16 113.9 12.2 77 572-654 13-91 (99)
230 1whx_A Hypothetical protein ri 99.3 1.9E-12 6.4E-17 121.7 7.6 75 574-652 10-84 (111)
231 3ulh_A THO complex subunit 4; 99.3 1.7E-12 5.7E-17 120.6 7.2 77 461-544 27-104 (107)
232 2dng_A Eukaryotic translation 99.3 2E-12 6.9E-17 119.3 7.7 80 460-546 12-91 (103)
233 1nu4_A U1A RNA binding domain; 99.3 1.5E-12 5.2E-17 118.5 6.7 81 572-653 6-90 (97)
234 1x4g_A Nucleolysin TIAR; struc 99.3 5.6E-12 1.9E-16 117.7 10.7 76 460-547 22-98 (109)
235 2dgx_A KIAA0430 protein; RRM d 99.3 5.3E-12 1.8E-16 115.1 10.3 75 462-545 8-87 (96)
236 2fy1_A RNA-binding motif prote 99.3 2.1E-12 7.3E-17 122.2 7.9 79 461-546 5-84 (116)
237 2dgv_A HnRNP M, heterogeneous 99.3 2E-12 6.9E-17 116.5 7.4 78 461-546 6-84 (92)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 4.5E-12 1.5E-16 123.2 10.4 79 571-649 60-140 (140)
239 1whx_A Hypothetical protein ri 99.3 2E-12 6.9E-17 121.4 7.4 74 461-546 8-82 (111)
240 1wi8_A EIF-4B, eukaryotic tran 99.3 2.3E-12 7.8E-17 119.2 7.6 78 461-545 13-91 (104)
241 2do0_A HnRNP M, heterogeneous 99.3 3.8E-12 1.3E-16 119.5 9.2 80 460-546 12-92 (114)
242 2cqd_A RNA-binding region cont 99.3 3.3E-12 1.1E-16 120.5 8.8 80 460-546 14-94 (116)
243 2d9p_A Polyadenylate-binding p 99.3 1.9E-12 6.4E-17 119.4 6.9 78 461-546 13-91 (103)
244 1iqt_A AUF1, heterogeneous nuc 99.3 1.1E-12 3.8E-17 113.5 5.0 74 465-544 1-74 (75)
245 2a3j_A U1 small nuclear ribonu 99.3 4.8E-12 1.6E-16 121.9 9.9 77 461-546 27-108 (127)
246 2cpx_A Hypothetical protein FL 99.3 5.1E-12 1.7E-16 118.9 9.9 81 572-654 23-107 (115)
247 2kxn_B Transformer-2 protein h 99.3 1.7E-12 5.8E-17 125.4 6.7 80 460-545 43-123 (129)
248 2cq3_A RNA-binding protein 9; 99.3 6.6E-12 2.3E-16 115.7 10.4 79 460-546 12-91 (103)
249 1x4e_A RNA binding motif, sing 99.3 6E-13 2E-17 118.3 3.1 78 572-649 3-82 (85)
250 2cqh_A IGF-II mRNA-binding pro 99.3 5.7E-12 2E-16 113.9 9.6 78 572-654 6-85 (93)
251 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 3.7E-12 1.3E-16 123.8 8.9 79 460-544 60-139 (140)
252 2err_A Ataxin-2-binding protei 99.3 2.7E-12 9.4E-17 120.0 7.6 78 460-545 26-104 (109)
253 2cpy_A RNA-binding protein 12; 99.3 2.2E-12 7.4E-17 121.7 6.9 81 571-652 12-94 (114)
254 3ex7_B RNA-binding protein 8A; 99.3 2.3E-12 8E-17 123.3 7.2 79 461-545 20-99 (126)
255 2dhg_A TRNA selenocysteine ass 99.3 2.2E-12 7.6E-17 119.1 6.7 78 461-545 7-87 (104)
256 2dh8_A DAZ-associated protein 99.3 1.8E-12 6.1E-17 120.0 6.1 81 460-546 13-93 (105)
257 1x4b_A Heterogeneous nuclear r 99.3 5.1E-12 1.7E-16 119.2 9.3 81 573-654 26-108 (116)
258 2db1_A Heterogeneous nuclear r 99.3 2.4E-12 8.3E-17 122.2 7.2 79 572-651 15-97 (118)
259 2hgl_A HNRPF protein, heteroge 99.3 1.9E-12 6.4E-17 126.2 6.5 82 460-545 41-122 (136)
260 2lmi_A GRSF-1, G-rich sequence 99.3 1.5E-12 5.2E-17 121.3 5.6 81 461-545 9-89 (107)
261 2xnq_A Nuclear polyadenylated 99.3 6.7E-12 2.3E-16 114.9 9.7 71 460-544 19-91 (97)
262 2cqh_A IGF-II mRNA-binding pro 99.3 3.1E-12 1.1E-16 115.7 7.4 74 461-546 6-81 (93)
263 1wel_A RNA-binding protein 12; 99.3 1.2E-12 4E-17 125.3 4.7 79 461-545 23-101 (124)
264 2kvi_A Nuclear polyadenylated 99.3 2.5E-12 8.7E-17 117.2 6.8 77 572-654 8-85 (96)
265 1wf1_A RNA-binding protein RAL 99.3 1.1E-11 3.9E-16 115.7 11.3 75 573-653 26-101 (110)
266 1p1t_A Cleavage stimulation fa 99.3 1.9E-12 6.6E-17 119.4 6.0 79 462-546 7-86 (104)
267 1x4c_A Splicing factor, argini 99.3 8.2E-12 2.8E-16 116.5 10.3 73 461-546 13-91 (108)
268 2fc9_A NCL protein; structure 99.3 3.4E-12 1.2E-16 117.2 7.6 76 460-545 12-88 (101)
269 2cqg_A TDP-43, TAR DNA-binding 99.3 1.4E-11 4.8E-16 113.5 11.7 81 572-654 13-95 (103)
270 2cq4_A RNA binding motif prote 99.3 1.3E-12 4.4E-17 122.9 4.7 78 461-544 23-100 (114)
271 1x4b_A Heterogeneous nuclear r 99.3 1.5E-12 5.2E-17 122.8 5.2 79 462-546 26-104 (116)
272 1x5o_A RNA binding motif, sing 99.3 4.2E-12 1.4E-16 119.3 8.2 80 572-651 23-111 (114)
273 3ue2_A Poly(U)-binding-splicin 99.3 6.6E-13 2.3E-17 126.2 2.6 79 861-964 19-114 (118)
274 2fc9_A NCL protein; structure 99.3 4.7E-12 1.6E-16 116.3 8.3 80 572-654 13-93 (101)
275 1wez_A HnRNP H', FTP-3, hetero 99.3 2.8E-12 9.5E-17 118.7 6.7 81 571-653 12-93 (102)
276 1wg5_A Heterogeneous nuclear r 99.3 5E-12 1.7E-16 117.2 8.4 80 572-652 13-94 (104)
277 1wg5_A Heterogeneous nuclear r 99.3 2.9E-12 9.9E-17 118.8 6.7 78 461-544 13-90 (104)
278 1iqt_A AUF1, heterogeneous nuc 99.3 2.5E-12 8.7E-17 111.3 5.7 73 576-649 1-75 (75)
279 1uaw_A Mouse-musashi-1; RNP-ty 99.3 1.6E-12 5.5E-17 113.0 4.4 74 464-544 1-75 (77)
280 2jvo_A Nucleolar protein 3; nu 99.3 5.6E-12 1.9E-16 117.8 8.4 72 460-545 28-100 (108)
281 1fjc_A Nucleolin RBD2, protein 99.3 2.4E-12 8.2E-17 117.1 5.6 78 573-653 15-92 (96)
282 1x4f_A Matrin 3; structural ge 99.3 2.6E-12 8.9E-17 120.8 6.0 79 571-653 22-103 (112)
283 2j76_E EIF-4B, EIF4B, eukaryot 99.3 9.5E-13 3.2E-17 121.1 3.0 78 461-545 17-95 (100)
284 2ki2_A SS-DNA binding protein 99.3 1.3E-12 4.5E-17 117.3 3.8 76 464-546 2-78 (90)
285 2cqg_A TDP-43, TAR DNA-binding 99.3 6.8E-12 2.3E-16 115.7 8.7 81 460-547 12-92 (103)
286 2dgt_A RNA-binding protein 30; 99.3 1.2E-11 4E-16 111.8 10.0 73 460-546 7-80 (92)
287 2kt5_A RNA and export factor-b 99.3 6.4E-12 2.2E-16 120.0 8.7 79 461-546 33-112 (124)
288 2e44_A Insulin-like growth fac 99.3 5.9E-12 2E-16 114.5 8.0 78 573-652 14-92 (96)
289 2rs2_A Musashi-1, RNA-binding 99.3 3.2E-12 1.1E-16 119.6 6.4 80 460-545 22-101 (109)
290 1nu4_A U1A RNA binding domain; 99.3 6.7E-12 2.3E-16 114.2 8.3 77 460-545 5-86 (97)
291 2dgw_A Probable RNA-binding pr 99.3 4.3E-12 1.5E-16 114.3 7.0 76 461-544 8-83 (91)
292 2jwn_A Embryonic polyadenylate 99.3 3.7E-12 1.3E-16 121.5 6.8 79 462-546 35-113 (124)
293 2e5g_A U6 snRNA-specific termi 99.3 9.5E-12 3.3E-16 112.9 9.1 77 573-653 7-83 (94)
294 2dnp_A RNA-binding protein 14; 99.3 1.2E-11 4.1E-16 111.2 9.7 73 460-546 6-79 (90)
295 3q2s_C Cleavage and polyadenyl 99.3 4.7E-12 1.6E-16 134.3 8.1 79 573-651 67-149 (229)
296 3egn_A RNA-binding protein 40; 99.3 5E-12 1.7E-16 123.9 7.7 84 460-546 42-128 (143)
297 2cpd_A Apobec-1 stimulating pr 99.3 2E-11 6.8E-16 111.8 11.1 75 460-546 12-87 (99)
298 2dis_A Unnamed protein product 99.3 1.1E-11 3.9E-16 115.3 9.6 81 461-546 6-90 (109)
299 1fj7_A Nucleolin RBD1, protein 99.3 1.7E-12 5.7E-17 119.4 3.7 79 573-653 16-96 (101)
300 2hgl_A HNRPF protein, heteroge 99.3 3.1E-12 1.1E-16 124.7 5.9 79 572-651 42-124 (136)
301 1fjc_A Nucleolin RBD2, protein 99.3 3.9E-12 1.3E-16 115.6 6.1 74 461-545 14-88 (96)
302 1h2v_Z 20 kDa nuclear CAP bind 99.3 5.2E-12 1.8E-16 125.6 7.5 82 460-547 36-118 (156)
303 1wez_A HnRNP H', FTP-3, hetero 99.3 1.6E-12 5.5E-17 120.3 3.5 76 461-544 13-88 (102)
304 2dnn_A RNA-binding protein 12; 99.3 8.4E-12 2.9E-16 117.0 8.3 76 574-651 16-92 (109)
305 1x5p_A Negative elongation fac 99.3 1.6E-11 5.6E-16 112.0 10.0 73 460-546 12-85 (97)
306 2lmi_A GRSF-1, G-rich sequence 99.3 2.3E-12 7.7E-17 120.1 4.3 80 572-652 9-92 (107)
307 2fc8_A NCL protein; structure 99.3 4.4E-12 1.5E-16 116.7 6.2 78 460-546 12-90 (102)
308 2dgu_A Heterogeneous nuclear r 99.3 1.5E-11 5.1E-16 113.5 9.8 72 461-546 9-81 (103)
309 2lea_A Serine/arginine-rich sp 99.3 4.1E-12 1.4E-16 123.6 6.3 80 461-546 45-125 (135)
310 2hgn_A Heterogeneous nuclear r 99.3 1.7E-12 5.7E-17 127.1 3.3 122 511-653 1-124 (139)
311 1x5p_A Negative elongation fac 99.3 2.1E-11 7.3E-16 111.2 10.5 77 572-654 13-89 (97)
312 1wel_A RNA-binding protein 12; 99.3 2.3E-12 7.9E-17 123.3 4.2 79 572-651 23-103 (124)
313 2cq2_A Hypothetical protein LO 99.2 1.3E-11 4.4E-16 116.3 9.1 76 572-651 23-105 (114)
314 1wg1_A KIAA1579 protein, homol 99.2 1.1E-11 3.9E-16 111.0 8.3 75 573-652 4-78 (88)
315 3zzy_A Polypyrimidine tract-bi 99.2 1.8E-11 6.2E-16 117.9 10.2 76 575-653 29-107 (130)
316 2dnn_A RNA-binding protein 12; 99.2 3.5E-12 1.2E-16 119.5 5.1 75 463-545 16-90 (109)
317 3egn_A RNA-binding protein 40; 99.2 5.6E-12 1.9E-16 123.5 6.6 81 572-653 43-131 (143)
318 2diu_A KIAA0430 protein; struc 99.2 1.7E-11 5.7E-16 110.5 9.1 70 462-547 7-83 (96)
319 2pe8_A Splicing factor 45; RRM 99.2 1.8E-11 6.3E-16 113.8 9.6 81 571-651 5-93 (105)
320 1rk8_A CG8781-PA, CG8781-PA pr 99.2 6.9E-12 2.4E-16 126.1 7.1 79 461-545 70-149 (165)
321 2f3j_A RNA and export factor b 99.2 1.3E-11 4.4E-16 125.8 9.0 82 572-653 86-168 (177)
322 2dha_A FLJ20171 protein; RRM d 99.2 5.9E-12 2E-16 120.6 5.9 80 461-544 21-101 (123)
323 3beg_B Splicing factor, argini 99.2 6.3E-12 2.1E-16 118.8 6.0 75 573-652 15-94 (115)
324 2kvi_A Nuclear polyadenylated 99.2 9.8E-12 3.4E-16 113.3 7.1 72 460-545 7-80 (96)
325 3d2w_A TAR DNA-binding protein 99.2 1.6E-11 5.4E-16 110.7 8.2 76 571-653 8-85 (89)
326 2cpi_A CCR4-NOT transcription 99.2 9.8E-12 3.4E-16 116.6 7.1 80 461-546 13-99 (111)
327 2cq2_A Hypothetical protein LO 99.2 1.9E-11 6.6E-16 115.1 8.9 72 461-544 23-102 (114)
328 1wf1_A RNA-binding protein RAL 99.2 1.7E-11 5.8E-16 114.6 8.5 71 462-546 26-98 (110)
329 2hzc_A Splicing factor U2AF 65 99.2 1.7E-11 5.7E-16 109.1 8.0 71 573-648 5-86 (87)
330 2xs2_A Deleted in azoospermia- 99.2 1.7E-11 5.8E-16 112.8 8.2 78 574-653 9-87 (102)
331 1sjr_A Polypyrimidine tract-bi 99.2 2.6E-11 8.8E-16 121.2 10.0 78 574-653 46-125 (164)
332 2fc8_A NCL protein; structure 99.2 2.3E-11 7.8E-16 111.8 8.8 81 571-654 12-94 (102)
333 3pgw_S U1-70K; protein-RNA com 99.2 4.7E-12 1.6E-16 146.7 5.2 163 591-769 9-181 (437)
334 2e5g_A U6 snRNA-specific termi 99.2 2.7E-11 9.3E-16 109.8 9.1 74 461-545 6-79 (94)
335 3q2s_C Cleavage and polyadenyl 99.2 6.5E-12 2.2E-16 133.3 5.5 79 462-546 67-148 (229)
336 2dha_A FLJ20171 protein; RRM d 99.2 9.3E-12 3.2E-16 119.2 5.6 79 572-651 21-104 (123)
337 2e5i_A Heterogeneous nuclear r 99.2 4.3E-11 1.5E-15 114.6 10.2 75 575-653 26-103 (124)
338 1x5o_A RNA binding motif, sing 99.2 1.4E-11 4.7E-16 115.7 6.7 78 460-544 22-108 (114)
339 2diu_A KIAA0430 protein; struc 99.2 3.5E-11 1.2E-15 108.4 8.8 72 575-654 10-86 (96)
340 2hgm_A HNRPF protein, heteroge 99.2 8.2E-12 2.8E-16 120.0 5.1 78 461-544 40-117 (126)
341 2lcw_A RNA-binding protein FUS 98.8 1.6E-12 5.6E-17 122.7 0.0 87 460-546 4-93 (116)
342 1wg1_A KIAA1579 protein, homol 99.2 1.4E-11 4.8E-16 110.4 6.0 71 461-544 3-74 (88)
343 2lcw_A RNA-binding protein FUS 98.8 1.8E-12 6.2E-17 122.4 0.0 82 573-654 6-97 (116)
344 2hgm_A HNRPF protein, heteroge 99.2 2.6E-11 8.7E-16 116.6 7.0 78 572-651 40-120 (126)
345 2j8a_A Histone-lysine N-methyl 99.2 5.2E-11 1.8E-15 113.2 8.8 76 574-649 2-93 (136)
346 2xs2_A Deleted in azoospermia- 99.2 5.4E-12 1.8E-16 116.1 2.0 75 462-544 8-82 (102)
347 2f3j_A RNA and export factor b 99.2 3.8E-11 1.3E-15 122.3 8.5 78 461-545 86-164 (177)
348 2bz2_A Negative elongation fac 99.2 4.6E-11 1.6E-15 114.0 8.5 77 572-654 37-113 (121)
349 3beg_B Splicing factor, argini 99.2 2.9E-11 1E-15 114.2 6.9 69 461-542 14-83 (115)
350 2e44_A Insulin-like growth fac 99.2 7.8E-11 2.7E-15 107.0 9.3 77 461-546 13-90 (96)
351 2hgn_A Heterogeneous nuclear r 99.1 6.9E-12 2.3E-16 122.7 2.0 76 461-544 44-119 (139)
352 1wf0_A TDP-43, TAR DNA-binding 99.1 3.7E-11 1.3E-15 107.5 5.7 77 573-654 4-80 (88)
353 2bz2_A Negative elongation fac 99.1 6.7E-11 2.3E-15 112.9 7.6 72 461-546 37-109 (121)
354 2dnl_A Cytoplasmic polyadenyla 99.1 4.3E-11 1.5E-15 112.7 6.0 74 461-543 6-83 (114)
355 2dnl_A Cytoplasmic polyadenyla 99.1 1.5E-10 5E-15 109.1 9.4 74 573-649 7-85 (114)
356 1sjr_A Polypyrimidine tract-bi 99.1 1.1E-10 3.8E-15 116.6 8.6 74 463-546 46-122 (164)
357 3v4m_A Splicing factor U2AF 65 99.1 1.3E-10 4.6E-15 108.0 8.1 79 573-651 4-96 (105)
358 2voo_A Lupus LA protein; RNA-b 99.1 3.4E-10 1.2E-14 116.8 12.0 120 520-651 63-186 (193)
359 3zzy_A Polypyrimidine tract-bi 99.1 1.5E-10 5.2E-15 111.4 8.4 71 464-545 29-103 (130)
360 2dit_A HIV TAT specific factor 99.1 2.7E-10 9.1E-15 107.0 9.6 81 571-653 12-103 (112)
361 2e5i_A Heterogeneous nuclear r 99.1 2E-10 6.7E-15 110.0 8.7 69 465-545 27-99 (124)
362 3u1l_A PRE-mRNA-splicing facto 99.1 1.3E-10 4.4E-15 123.5 8.0 78 573-654 133-231 (240)
363 3u1l_A PRE-mRNA-splicing facto 99.1 2E-10 6.9E-15 121.9 8.9 76 460-547 131-228 (240)
364 2voo_A Lupus LA protein; RNA-b 99.1 1.1E-10 3.9E-15 120.4 6.7 82 462-550 108-189 (193)
365 3d2w_A TAR DNA-binding protein 99.1 3.5E-10 1.2E-14 101.8 9.0 70 460-544 8-80 (89)
366 1wf0_A TDP-43, TAR DNA-binding 99.0 1.8E-10 6.1E-15 103.0 6.2 73 461-546 3-76 (88)
367 2j8a_A Histone-lysine N-methyl 99.0 1E-10 3.6E-15 111.1 4.8 74 464-543 3-91 (136)
368 1jmt_A Splicing factor U2AF 35 99.0 2.7E-10 9.1E-15 105.8 4.0 71 579-649 20-103 (104)
369 3dxb_A Thioredoxin N-terminall 98.9 2E-09 6.9E-14 113.1 9.9 84 678-768 123-211 (222)
370 2d9o_A DNAJ (HSP40) homolog, s 98.8 2.1E-08 7.1E-13 92.3 10.1 66 584-654 27-92 (100)
371 3tht_A Alkylated DNA repair pr 98.8 9.8E-09 3.4E-13 114.6 9.4 72 460-543 15-94 (345)
372 3tht_A Alkylated DNA repair pr 98.8 7.6E-09 2.6E-13 115.5 8.3 75 571-649 15-96 (345)
373 3dxb_A Thioredoxin N-terminall 98.7 4.3E-09 1.5E-13 110.6 2.7 44 921-964 175-218 (222)
374 2d9o_A DNAJ (HSP40) homolog, s 98.5 1.4E-07 4.7E-12 86.8 8.2 58 706-769 32-89 (100)
375 2dnr_A Synaptojanin-1; RRM dom 98.4 8.5E-07 2.9E-11 79.2 9.5 59 703-769 27-85 (91)
376 2dnr_A Synaptojanin-1; RRM dom 98.4 5.8E-07 2E-11 80.3 7.0 57 589-652 30-86 (91)
377 1owx_A Lupus LA protein, SS-B, 98.3 6.6E-07 2.2E-11 84.8 7.4 76 570-649 14-93 (121)
378 1owx_A Lupus LA protein, SS-B, 98.2 2.5E-06 8.6E-11 80.8 7.4 71 461-543 16-91 (121)
379 1ufw_A Synaptojanin 2; RNP dom 98.1 2.8E-06 9.7E-11 76.2 6.6 71 574-651 15-94 (95)
380 1ufw_A Synaptojanin 2; RNP dom 98.1 1.4E-06 4.7E-11 78.3 4.5 58 702-767 35-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.0 2.4E-05 8.1E-10 71.6 9.2 75 571-649 18-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.4 0.00039 1.3E-08 63.7 8.4 76 462-544 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.0 0.0027 9.3E-08 57.7 9.1 93 462-587 7-99 (104)
384 1wey_A Calcipressin 1; structu 96.8 0.0076 2.6E-07 55.0 10.2 76 573-652 4-84 (104)
385 1wey_A Calcipressin 1; structu 95.9 0.016 5.5E-07 52.9 7.1 69 463-543 5-79 (104)
386 1whv_A Poly(A)-specific ribonu 95.7 0.019 6.4E-07 51.6 6.6 57 571-634 13-69 (100)
387 1wwh_A Nucleoporin 35, nucleop 95.0 0.075 2.6E-06 49.8 8.5 71 573-649 23-94 (119)
388 1uw4_A UPF3X; nonsense mediate 94.9 0.059 2E-06 48.2 7.2 65 575-639 2-70 (91)
389 1wwh_A Nucleoporin 35, nucleop 94.4 0.14 4.7E-06 48.0 8.6 68 463-543 24-92 (119)
390 1uw4_A UPF3X; nonsense mediate 94.2 0.038 1.3E-06 49.4 4.4 70 464-538 2-73 (91)
391 3ctr_A Poly(A)-specific ribonu 93.8 0.08 2.7E-06 47.7 5.6 55 574-635 6-60 (101)
392 2dhx_A Poly (ADP-ribose) polym 93.8 0.22 7.6E-06 45.2 8.5 72 573-651 7-83 (104)
393 3p3d_A Nucleoporin 53; structu 92.8 0.09 3.1E-06 49.9 4.5 77 573-651 6-98 (132)
394 2l08_A Regulator of nonsense t 91.1 0.14 5E-06 46.1 3.6 71 462-537 8-80 (97)
395 1whv_A Poly(A)-specific ribonu 90.2 0.61 2.1E-05 41.9 6.7 54 461-529 14-67 (100)
396 3pq1_A Poly(A) RNA polymerase; 88.3 0.22 7.6E-06 57.4 3.2 58 462-532 52-110 (464)
397 3pq1_A Poly(A) RNA polymerase; 87.3 0.33 1.1E-05 56.0 3.8 55 574-632 53-107 (464)
398 2l08_A Regulator of nonsense t 87.3 0.26 8.8E-06 44.4 2.4 66 574-639 9-78 (97)
399 3p3d_A Nucleoporin 53; structu 86.9 1.2 4E-05 42.4 6.6 79 464-543 8-94 (132)
400 3ctr_A Poly(A)-specific ribonu 85.0 0.49 1.7E-05 42.7 2.9 53 464-531 7-60 (101)
401 1jmt_B Splicing factor U2AF 65 67.8 1.4 4.8E-05 30.3 0.5 15 392-406 7-21 (28)
402 3d45_A Poly(A)-specific ribonu 50.7 22 0.00074 41.5 6.9 55 574-635 440-494 (507)
403 3d45_A Poly(A)-specific ribonu 34.3 46 0.0016 38.6 6.3 54 463-531 440-494 (507)
404 3lpe_A Putative transcription 23.5 1.5E+02 0.005 26.0 6.2 33 718-754 40-72 (92)
405 2g0c_A ATP-dependent RNA helic 21.7 1.5E+02 0.0051 24.5 5.7 59 584-649 11-74 (76)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-35 Score=324.72 Aligned_cols=241 Identities=16% Similarity=0.200 Sum_probs=210.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+++|+++|+++|+.|| + ..+.++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G----i---------~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 86 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE----L---------KYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERE 86 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC----E---------EEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC----C---------EEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeE
Confidence 4568999999999999999999999987 2 344558899999999999999999998 9999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEE
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCA 617 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~a 617 (967)
|.|.+. ....+|||+|||..+++++|+++|+.||.|..+.++.+. +.++|||
T Consensus 87 i~v~~~--------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~a 140 (284)
T 3smz_A 87 LSVQLQ--------------------------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYG 140 (284)
T ss_dssp CEEEEC--------------------------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE
T ss_pred EEEEec--------------------------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEE
Confidence 999831 134689999999999999999999999999999998874 3468999
Q ss_pred EEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCC
Q 002093 618 FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLS 697 (967)
Q Consensus 618 FVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~ 697 (967)
||+|.+.++|.+|+..|+|..|+|+.|.|.++.+..... ...+..+|+|.|+..... +
T Consensus 141 fV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~------------------~~~~~~~l~v~nlp~~~~----~ 198 (284)
T 3smz_A 141 FAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP------------------ALLHSRCLCVDRLPPGFN----D 198 (284)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT------------------TTTSCSEEEEECCCTTCC----C
T ss_pred EEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc------------------ccCCccEEEEecCCcccC----C
Confidence 999999999999999999999999999999997643211 123567899999965310 2
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 698 ELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 698 ~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
+ +||+++|++||.|..|.|+++..|..+|||||+|.+.++|.+|+..|||..|+|+.+.|..+..
T Consensus 199 ~-------~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 199 V-------DALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp H-------HHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred H-------HHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 2 5899999999999999999998999999999999999999999999999999999999988754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.6e-35 Score=325.57 Aligned_cols=249 Identities=12% Similarity=0.129 Sum_probs=201.1
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecc
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGS 538 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr 538 (967)
.....++|||+|||+.+|+++|+++|+.||.+..+..+ .+ ...++|||||+|.+.++|..||++||..|.|+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~------~~--~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 108 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA------DS--LKKNFRFARIEFARYDGALAAITKTHKVVGQN 108 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEE------EC--TTSSSEEEEEEESSHHHHHHHHTTTTCEETTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------EC--CCCCcEEEEEEECCHHHHHHHHHhCCcEeCCc
Confidence 34678899999999999999999999999953332111 11 12358999999999999999999999999999
Q ss_pred eeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcC-CeeEEEEeecC-CCCCCE
Q 002093 539 ILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFG-PLKAYHFEVNE-DHEEPC 616 (967)
Q Consensus 539 ~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G-~V~~v~l~~d~-~~skG~ 616 (967)
+|.|.+ ....+|||+|||..+++++|+++|+.|| .|..|.|+.+. +.++||
T Consensus 109 ~i~v~~---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~ 161 (292)
T 2ghp_A 109 EIIVSH---------------------------LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRF 161 (292)
T ss_dssp ECEEEE---------------------------CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCE
T ss_pred EEEEEE---------------------------CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceE
Confidence 999983 1367999999999999999999999999 99999998875 456999
Q ss_pred EEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCC
Q 002093 617 AFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSL 696 (967)
Q Consensus 617 aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i 696 (967)
|||+|.+.++|.+|+..|||..|.|+.|.|.++.+....... .....+.++|+|.||.... +
T Consensus 162 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------~~~~~~~~~l~v~nlp~~~-~--- 223 (292)
T 2ghp_A 162 AYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT--------------DSATLEGREIMIRNLSTEL-L--- 223 (292)
T ss_dssp EEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-----------------------CCTTTEEEEEEECTTT-C---
T ss_pred EEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc--------------cccCCCCceEEEECCCccc-C---
Confidence 999999999999999999999999999999999765432211 0113457889999986530 1
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEEEEEecCCC--CCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 697 SELEVEEVLEDVRLECARFGSVKSVNVVKYGD--SNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 697 ~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~--g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
++ ++|+++|++||.|+.|.|+++.. |..+|||||+|.+.++|.+|+ .|||..|.|+.+.|..+.
T Consensus 224 t~-------~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 224 DE-------NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp CH-------HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred CH-------HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 22 57999999999999999999876 899999999999999999999 999999999999987764
No 3
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=1.6e-28 Score=253.25 Aligned_cols=192 Identities=36% Similarity=0.621 Sum_probs=159.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|+.||.+.|+..++. .+|.++.++.++|||||+|.+.++|..||.|||..|.|++|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~-~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i 80 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPG-NPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSS-CSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCC-CceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceE
Confidence 34689999999999999999999999998877654433 36788999999999999999999999999999999999999
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAF 618 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aF 618 (967)
.|.++..+..............++...........+|||+|||..+++++|+++|++||.|..|.++.+. +.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9998877654422111111111222223334567899999999999999999999999999999999884 44589999
Q ss_pred EeecCcchHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002093 619 IEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 653 (967)
Q Consensus 619 VeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~ 653 (967)
|+|.+.++|.+|+..|||..|+|+.|.|.++.+..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999997754
No 4
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=9.7e-28 Score=241.73 Aligned_cols=169 Identities=37% Similarity=0.668 Sum_probs=149.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
++.++|||+|||+.+|+++|+++|+.||.+.|+..... .+|.++.++.++|||||+|.+.++|..|+.|||..|.|++|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~-~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPG-NPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSS-CSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCC-CceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 34689999999999999999999999998777543322 26788899999999999999999999999999999999999
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAF 618 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aF 618 (967)
.|.++..+.. .....+|||+|||..+++++|+++|++||.|..|.++.+. +.++||||
T Consensus 81 ~v~~~~~~~~--------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~af 140 (172)
T 2g4b_A 81 KIRRPHDYQP--------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 140 (172)
T ss_dssp EEECCSSCCC--------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEE
T ss_pred eecCCcccCC--------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEE
Confidence 9997554432 1236889999999999999999999999999999999884 44589999
Q ss_pred EeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 619 IEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 619 VeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
|+|.+.++|.+|+..|||..|+|+.|.|.+|.
T Consensus 141 V~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 141 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999999999873
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=4.8e-28 Score=254.44 Aligned_cols=168 Identities=21% Similarity=0.300 Sum_probs=144.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+++|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||. +|+..+.|+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIR------VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE------EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 3567999999999999999999999999644331 33556678999999999999999999999 9999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEE
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFI 619 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFV 619 (967)
|+|.+....... ......+|||+|||..+++++|+++|++||.|..|.|+.+.+.++|||||
T Consensus 87 i~~~~~~~~~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV 148 (213)
T 4f02_A 87 VRIMWSQRDPSL------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFV 148 (213)
T ss_dssp CEEEECCCCTHH------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEE
T ss_pred cccccccccccc------------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEE
Confidence 999853221111 11235689999999999999999999999999999999998778999999
Q ss_pred eecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 620 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 149 ~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 149 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999999999999999999999998653
No 6
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.9e-26 Score=233.41 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=143.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
....++|||+|||+.+|+++|+++|..||.+.++ .+.+..++.++|||||+|.+.++|..||+|||..|.|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-------~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-------EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeE
Confidence 4567899999999999999999999999986661 457788999999999999999999999999999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEE
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFI 619 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFV 619 (967)
|.|.++..... .......+|||+|||..+++++|+++|++||.|..+ ...+.++|||||
T Consensus 83 l~v~~~~~~~~------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV 141 (175)
T 1fje_B 83 IKLEKPKGRDS------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYI 141 (175)
T ss_dssp EEEECCCCSSC------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEE
T ss_pred EEEecCCCccc------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEE
Confidence 99986433211 112246799999999999999999999999988766 445567999999
Q ss_pred eecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 620 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 142 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp ECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999999999999653
No 7
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.4e-25 Score=245.33 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=135.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
..++|||+|||..+|+++|+++|+.|| |..+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 468999999999999999999999999 888887 3368999999999999999999999999999999998752
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CCCc
Q 002093 653 GSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNI 731 (967)
Q Consensus 653 ~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g~~ 731 (967)
+...|+|.||.... ++ ++|+++|++||.|..|.|+.+. +|..
T Consensus 94 -------------------------~~~~l~v~nlp~~~-----t~-------~~l~~~f~~~G~i~~~~i~~~~~~g~~ 136 (284)
T 3smz_A 94 -------------------------TDALLCVANLPPSL-----TQ-------QQFEELVRPFGSLERCFLVYSERTGQS 136 (284)
T ss_dssp -------------------------CSCEEEEESCCTTC-----CH-------HHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred -------------------------CCCEEEEcCCCCcC-----CH-------HHHHHHHHhcCCeeEEEEEeeCCCCcc
Confidence 23578999986532 33 5799999999999999999874 7889
Q ss_pred ceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 732 STIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 732 ~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
+|||||+|.+.++|.+|+..|||..|.|+.+.|..+.
T Consensus 137 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 137 KGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 9999999999999999999999999999999887754
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=2.4e-26 Score=236.53 Aligned_cols=174 Identities=17% Similarity=0.263 Sum_probs=140.5
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
....++|||+|||+++|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||.+++..|.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV------VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 34568999999999999999999999999643321 234445688899999999999999999999999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEE
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCA 617 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~a 617 (967)
|.|.++....... .........+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||
T Consensus 84 l~v~~~~~~~~~~--------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a 149 (196)
T 1l3k_A 84 VEPKRAVSREDSQ--------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFA 149 (196)
T ss_dssp CEEEECCC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEE
T ss_pred eeeecccCccccc--------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceE
Confidence 9998643322110 00112345899999999999999999999999999999999884 4468999
Q ss_pred EEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 618 FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 618 FVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
||+|.+.++|.+|+.. +|..|+|+.|.|.++.+...
T Consensus 150 fV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 150 FVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp EEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred EEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 9999999999999985 89999999999999977544
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.1e-26 Score=227.75 Aligned_cols=162 Identities=19% Similarity=0.254 Sum_probs=137.8
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
++|||+|||+++|+++|+++|+.||.+..+. ++....+.++|||||+|.+.++|..|+. |||..+.|+.|.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~-------i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIK-------IMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEE-------EECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEE-------EEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEE
Confidence 6899999999999999999999999644321 1222346789999999999999999997 9999999999999
Q ss_pred eCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEe
Q 002093 543 KRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIE 620 (967)
Q Consensus 543 ~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVe 620 (967)
.++..... .......+|||+|||..+++++|+++|++||.|..+.++.+. +.++|||||+
T Consensus 74 ~~~~~~~~------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 135 (166)
T 3md3_A 74 NWAFQSQQ------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 135 (166)
T ss_dssp EECCCCCC------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEE
T ss_pred EEcCCCCC------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEE
Confidence 85322111 112346799999999999999999999999999999999874 3458999999
Q ss_pred ecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 621 YVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 621 F~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
|.+.++|.+|+..|||..|+|+.|.|.+|.
T Consensus 136 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 136 FTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999999999985
No 10
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=6.5e-26 Score=248.92 Aligned_cols=156 Identities=10% Similarity=0.028 Sum_probs=133.0
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|||..+|+++|+++|+.||.|..|.|+.+...++|||||+|.+.++|.+|+. |+|..|+|+.|.|.++
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-- 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-- 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC--
Confidence 4568999999999999999999999999999999999877779999999999999999995 9999999999999875
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCC-CeEEEEEecCCCCC
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFG-SVKSVNVVKYGDSN 730 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG-~V~~V~I~r~~~g~ 730 (967)
+...|+|.||.... ++ ++|+++|.+|| .|..|.|+++..|.
T Consensus 116 --------------------------~~~~l~v~nlp~~~-----t~-------~~l~~~f~~~G~~i~~v~i~~~~~~~ 157 (292)
T 2ghp_A 116 --------------------------TECTLWMTNFPPSY-----TQ-------RNIRDLLQDINVVALSIRLPSLRFNT 157 (292)
T ss_dssp --------------------------CSCEEEEECCCTTC-----CH-------HHHHHHHHHTTCCCCEEECC------
T ss_pred --------------------------CCCEEEEECCCCCC-----CH-------HHHHHHHHHhCCCeEEEEEEeCCCCC
Confidence 24678899986532 22 57899999999 99999999988788
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 731 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 731 ~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
.+|||||+|.+.++|.+|+..|||..|.|+.+.|..+.
T Consensus 158 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 99999999999999999999999999999999887654
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.93 E-value=3.7e-26 Score=238.74 Aligned_cols=179 Identities=22% Similarity=0.312 Sum_probs=145.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+++|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||+ |||..|.|+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSID------MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 3467999999999999999999999999644332 22444578899999999999999999999 9999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEE
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCA 617 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~a 617 (967)
|.|.++.......+.... .........+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||
T Consensus 100 l~v~~~~~~~~~~~~~~~---------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 170 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPIIDQ---------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYG 170 (216)
T ss_dssp CEEECCSCCGGGHHHHHH---------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEE
T ss_pred EEEecCCCccccchhhhh---------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceE
Confidence 999876554322110000 00112346899999999999999999999999999999999884 3458999
Q ss_pred EEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 618 FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 618 FVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
||+|.+.++|.+|+..|||..|+|+.|.|.++.+...
T Consensus 171 fV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 171 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred EEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999999999999999976543
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=9.5e-26 Score=226.02 Aligned_cols=162 Identities=19% Similarity=0.256 Sum_probs=139.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
+.++|||+|||+++|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |+|..|.|++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCR------IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 357999999999999999999999999643321 23444578889999999999999999998 99999999999
Q ss_pred EEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEE
Q 002093 541 KIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAF 618 (967)
Q Consensus 541 ~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aF 618 (967)
.|.+..... ......+|||+|||..+++++|+++|++||.|..+.++.+. +.++||||
T Consensus 76 ~v~~~~~~~--------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~af 135 (168)
T 1b7f_A 76 KVSYARPGG--------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAF 135 (168)
T ss_dssp EEEECCCCS--------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEE
T ss_pred EEEecCCCc--------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEE
Confidence 998532111 12346799999999999999999999999999999999885 34589999
Q ss_pred EeecCcchHHHHHHHhCCCccCC--eEEEEEEc
Q 002093 619 IEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQA 649 (967)
Q Consensus 619 VeF~~~e~A~~Al~~LnG~~~~G--r~I~V~~a 649 (967)
|+|.+.++|.+|+..|||..|.| ++|.|.+|
T Consensus 136 V~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 136 VRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999988 99999876
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=1.6e-25 Score=223.70 Aligned_cols=161 Identities=18% Similarity=0.337 Sum_probs=137.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..+.|++|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK------LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEE
Confidence 57999999999999999999999999644321 22344478889999999999999999999 999999999999
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEE
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFI 619 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFV 619 (967)
|.+..... ......+|||+|||..+++++|+++|++||.|..+.++.+. +.++|||||
T Consensus 76 v~~~~~~~--------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 135 (167)
T 1fxl_A 76 VSYARPSS--------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 135 (167)
T ss_dssp EEECCCCC--------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred EEecCCCc--------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEE
Confidence 98532111 11245789999999999999999999999999999998875 345899999
Q ss_pred eecCcchHHHHHHHhCCCccCCeE--EEEEEc
Q 002093 620 EYVDQLVTPKAIAGLNGLKVGGQV--LTAVQA 649 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~~Gr~--I~V~~a 649 (967)
+|.+.++|.+|+..|||..|.|+. |.|.||
T Consensus 136 ~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 136 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999965 888775
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=3.6e-25 Score=223.06 Aligned_cols=163 Identities=19% Similarity=0.247 Sum_probs=133.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeec--CCCcEEEEEEcCHHHHHHHHH-ccCceee--
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ--REKGQAFVEFLTAEDASAALC-CDGCSFS-- 536 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~--~skG~aFVeF~~~e~A~~Al~-lng~~l~-- 536 (967)
..++|||+|||+++|+++|+++|+.||.+..+. .+.+..++ .++|||||+|.+.++|..|+. |||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEIN------VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 357999999999999999999999999644321 22333444 789999999999999999999 9998776
Q ss_pred -cceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-CCC
Q 002093 537 -GSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEE 614 (967)
Q Consensus 537 -Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-~sk 614 (967)
++++.+..+.... .......+|||+|||..+|+++|+++|++||.|..|.++.+.. .++
T Consensus 76 ~~~~~~~~~~~~~~-------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~ 136 (175)
T 3nmr_A 76 MHHPIQMKPADSEK-------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 136 (175)
T ss_dssp CSSCCEEEECGGGC-------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEE
T ss_pred CccceEEccccccc-------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEE
Confidence 5666666321110 0122457899999999999999999999999999999988743 458
Q ss_pred CEEEEeecCcchHHHHHHHhCCCccC---CeEEEEEEc
Q 002093 615 PCAFIEYVDQLVTPKAIAGLNGLKVG---GQVLTAVQA 649 (967)
Q Consensus 615 G~aFVeF~~~e~A~~Al~~LnG~~~~---Gr~I~V~~a 649 (967)
|||||+|.+.++|.+|+..|||..+. |++|.|.+|
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 137 GCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99999999999999999999998775 499999987
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.92 E-value=8.3e-26 Score=226.45 Aligned_cols=163 Identities=15% Similarity=0.255 Sum_probs=138.5
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
+.++|||+|||+++|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. ++..|.|+.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLK------IMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEE------CCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcc
Confidence 467999999999999999999999999644432 23444678899999999999999999999 45789999998
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEE
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFI 619 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFV 619 (967)
|.++..... .....+|||+|||..+++++|+++|++||.|..+.++.+. +.++|||||
T Consensus 75 v~~~~~~~~--------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV 134 (167)
T 2cjk_A 75 PKRAIPRDE--------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV 134 (167)
T ss_dssp CEECCCHHH--------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEE
T ss_pred cccccchhh--------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEE
Confidence 875322110 1235689999999999999999999999999999998874 457999999
Q ss_pred eecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 620 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 620 eF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
+|.+.++|.+|++ |+|..|+|+.|.|.+|.|.
T Consensus 135 ~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 135 TYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999998 9999999999999999763
No 16
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.92 E-value=9.8e-24 Score=211.34 Aligned_cols=161 Identities=14% Similarity=0.221 Sum_probs=140.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
+.++|||+|||..+++++|+++|+.||.|..|.++.+.. .++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 367999999999999999999999999999999988743 358999999999999999999999999999999999986
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CC
Q 002093 651 LDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DS 729 (967)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g 729 (967)
+... ..+...|+|.|+.... ++ ++|+++|++||.|+.|.|+++. .|
T Consensus 82 ~~~~---------------------~~~~~~l~v~nl~~~~-----t~-------~~l~~~f~~~G~i~~~~i~~~~~~~ 128 (168)
T 1b7f_A 82 PGGE---------------------SIKDTNLYVTNLPRTI-----TD-------DQLDTIFGKYGSIVQKNILRDKLTG 128 (168)
T ss_dssp CCSS---------------------TTTTCEEEEESCCTTC-----CH-------HHHHHHHTSSSCEEEEEEEECTTTC
T ss_pred CCcc---------------------cCCCCCEEEeCCCCCC-----CH-------HHHHHhhhcCCcEEEEEEEEcCCCC
Confidence 5432 1346789999986532 33 5799999999999999999886 78
Q ss_pred CcceeEEEEeCCHHHHHHHHHHhCCCccCC--CcceeEE
Q 002093 730 NISTIQACEGNENTASAGVGQNLTNDETNE--KGERLEE 766 (967)
Q Consensus 730 ~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~--r~~~v~~ 766 (967)
..+|||||+|.+.++|.+|+..|||..|.| +.+.|..
T Consensus 129 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 129 RPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 889999999999999999999999999988 6666643
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.91 E-value=2.9e-24 Score=224.66 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=134.2
Q ss_pred CCCEEEEeCCC-CcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 462 PMRRLCVENLP-LSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 462 ~~r~LyVgNLp-~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
+.++|||+||| ..+|+++|+++|+.||. |.++.+ ...+|||||+|.+.++|..||+ |||..|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~------------v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN------------VEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC------------EEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC------------eEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45799999999 79999999999999994 333333 2358999999999999999999 999999999
Q ss_pred eeEEeCCCcccccccc--ccc------ccccc--cCCc-------CCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCe
Q 002093 539 ILKIKRPKEFVEVASG--EAE------KSVAS--VDSV-------SGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPL 601 (967)
Q Consensus 539 ~l~V~rp~~~~~~~~~--~~~------~~~~~--~~~~-------~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V 601 (967)
+|.|...+.....+.. ..+ ..... .... ......+..+|||+|||..+|+++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 9999865422110000 000 00000 0000 00112345789999999999999999999999999
Q ss_pred --eEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCe----EEEEEEc
Q 002093 602 --KAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ----VLTAVQA 649 (967)
Q Consensus 602 --~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr----~I~V~~a 649 (967)
..|.++.+.+..+|+|||+|.+.++|.+||..|||..|.|. ++.|++|
T Consensus 151 ~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88999887655679999999999999999999999999887 4666554
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=6.5e-24 Score=231.80 Aligned_cols=180 Identities=19% Similarity=0.270 Sum_probs=138.8
Q ss_pred CCCCCCEEEEeCCCCcchHHHHH----HHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCc
Q 002093 459 SNRPMRRLCVENLPLSASEKALM----EFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC 533 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~----~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~ 533 (967)
...+.++|||+|||+.+|+++|+ ++|..||.+..+ .-..++.++|||||+|.+.++|..|+. |||.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v---------~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDI---------LVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEE---------EEcCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 34678899999999999999977 899999853322 111277899999999999999999998 9999
Q ss_pred eeecceeEEeCCCcccccc---cccc-c------------------------------------c---------------
Q 002093 534 SFSGSILKIKRPKEFVEVA---SGEA-E------------------------------------K--------------- 558 (967)
Q Consensus 534 ~l~Gr~l~V~rp~~~~~~~---~~~~-~------------------------------------~--------------- 558 (967)
.|.|+.|+|.+........ .+.. + .
T Consensus 76 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (282)
T 3pgw_A 76 PFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMH 155 (282)
T ss_pred eeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccc
Confidence 9999999998654322100 0000 0 0
Q ss_pred -------------cccccCC-----------------------cCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCee
Q 002093 559 -------------SVASVDS-----------------------VSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLK 602 (967)
Q Consensus 559 -------------~~~~~~~-----------------------~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~ 602 (967)
....++. .........++|||+|||..+++++|+++|++||.|.
T Consensus 156 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~ 235 (282)
T 3pgw_A 156 HMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 235 (282)
T ss_pred cCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE
Confidence 0000000 0001122357899999999999999999999999999
Q ss_pred EEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccC-CeEEEEEEcc
Q 002093 603 AYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQAV 650 (967)
Q Consensus 603 ~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~-Gr~I~V~~a~ 650 (967)
.|.|+.+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 236 ~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 236 EVRLVPG---RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEecC---CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999866 3699999999999999999999999999 9999999974
No 19
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6e-24 Score=211.99 Aligned_cols=162 Identities=14% Similarity=0.178 Sum_probs=142.5
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 653 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~ 653 (967)
++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 479999999999999999999999999999998885 3468999999999999999999999999999999999986543
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC-CCCCcc
Q 002093 654 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNIS 732 (967)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~-~~g~~~ 732 (967)
.. ...+...|+|.|+.... ++ ++|+++|++||.|..|.|+.+ .+|..+
T Consensus 81 ~~-------------------~~~~~~~l~v~nl~~~~-----t~-------~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 129 (166)
T 3md3_A 81 QS-------------------SSDDTFNLFVGDLNVNV-----DD-------ETLRNAFKDFPSYLSGHVMWDMQTGSSR 129 (166)
T ss_dssp CC-------------------CCTTCEEEEEESCCTTC-----CH-------HHHHHHHTTSTTEEEEEEEECTTTCCEE
T ss_pred CC-------------------CCCCCceEEECCCCCCC-----CH-------HHHHHHHhccCCeeEEEEEecCCCCCcc
Confidence 21 12357889999986532 33 579999999999999999987 578899
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEe
Q 002093 733 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 767 (967)
Q Consensus 733 G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~ 767 (967)
|||||+|.+.++|.+|+..|||..|+|+.+.|..+
T Consensus 130 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 130 GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 99999999999999999999999999999998764
No 20
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.91 E-value=1.2e-23 Score=209.88 Aligned_cols=160 Identities=10% Similarity=0.190 Sum_probs=139.9
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+|||..+++++|+++|+.||.|..|.++.+. +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999885 34579999999999999999999999999999999999865
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CCC
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSN 730 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g~ 730 (967)
... ..+...|+|.|+.... ++ ++|+++|++||.|+.|.|+.+. +|.
T Consensus 82 ~~~---------------------~~~~~~l~v~nl~~~~-----t~-------~~l~~~f~~~G~i~~~~i~~~~~~g~ 128 (167)
T 1fxl_A 82 SSA---------------------SIRDANLYVSGLPKTM-----TQ-------KELEQLFSQYGRIITSRILVDQVTGV 128 (167)
T ss_dssp CCG---------------------GGTTCEEEEESCCTTC-----CH-------HHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred Ccc---------------------cCCCCcEEECCCCCcC-----CH-------HHHHHHHHhcCCEeEEEEEecCCCCC
Confidence 432 1235679999986532 22 5799999999999999999875 788
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEE
Q 002093 731 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 766 (967)
Q Consensus 731 ~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~ 766 (967)
.+|||||+|.+.++|.+|++.|||..|.|+.+.|..
T Consensus 129 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 129 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred ccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 899999999999999999999999999998865544
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=3.3e-24 Score=225.22 Aligned_cols=165 Identities=13% Similarity=0.143 Sum_probs=141.4
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
+.++|||+|||..+|+++|+++|++||.|.+|.|+++.. .++|||||+|.+.++|.+|+..|||..+.|+.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 457899999999999999999999999999999998854 468999999999999999999999999999999998875
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCC
Q 002093 651 LDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSN 730 (967)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~ 730 (967)
...... ......|+|.||.... ++ ++|+++|++||.|+.|.|+++.. .
T Consensus 94 ~~~~~~-------------------~~~~~~l~v~nl~~~~-----t~-------~~l~~~F~~~G~i~~~~i~~d~~-~ 141 (213)
T 4f02_A 94 RDPSLR-------------------KSGVGNIFIKNLDKSI-----DN-------KALYDTFSAFGNILSCKVVCDEN-G 141 (213)
T ss_dssp CCTHHH-------------------HHCTTEEEEESCCTTC-----CH-------HHHHHHHGGGSCEEEEEEEEETT-E
T ss_pred cccccc-------------------ccccccceECCccccc-----HH-------HHHHHHHhhcCCeEEEEeeccCC-C
Confidence 432211 1134578999986532 33 57999999999999999998754 4
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 731 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 731 ~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
.+|||||+|.+.++|.+|++.|||..|+|+.+.|..+..
T Consensus 142 ~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 142 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 789999999999999999999999999999999977643
No 22
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=1.4e-23 Score=222.87 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=137.7
Q ss_pred CCCCEEEEeCCCC-cchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecC-CCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 461 RPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR-EKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~-~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~-skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
.+.++|||+|||+ .+|+++|+++|+.||. |..+.+.. .+|||||+|.+.++|..|++ |||..|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~------------i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTC------------EEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4567999999999 9999999999999995 23333322 27999999999999999998 99999999
Q ss_pred ceeEEeCCCccccccccccccc--------------ccccC-CcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcC-Ce
Q 002093 538 SILKIKRPKEFVEVASGEAEKS--------------VASVD-SVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFG-PL 601 (967)
Q Consensus 538 r~l~V~rp~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G-~V 601 (967)
+.|.|.+........+...... ...+. ........+..+|||+|||..+++++|+++|++|| .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 9999986543321100000000 00000 00011123468999999999999999999999999 99
Q ss_pred eEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccC-CeEEEEEEccc
Q 002093 602 KAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQAVL 651 (967)
Q Consensus 602 ~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~-Gr~I~V~~a~~ 651 (967)
..|.++.+ ++|||||+|.+.++|.+|+..|||..|+ |+.|.|.++.+
T Consensus 180 ~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 180 KGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred eEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99998664 5899999999999999999999999999 99999999865
No 23
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=1e-23 Score=218.00 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=135.7
Q ss_pred CCEEEEeCCCC-cchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecC-CCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 463 MRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR-EKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 463 ~r~LyVgNLp~-~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~-skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.++|||+|||+ .+|+++|+++|+.||.+. .+.+.. .+|||||+|.+.++|..|+. |||..|.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~------------~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQ------------RVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCS------------EEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEE------------EEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 47999999999 999999999999999533 222221 27999999999999999999 9999999999
Q ss_pred eEEeCCCcccccccccccc------cc--------cccC-CcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcC-CeeE
Q 002093 540 LKIKRPKEFVEVASGEAEK------SV--------ASVD-SVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFG-PLKA 603 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~------~~--------~~~~-~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G-~V~~ 603 (967)
|.|.+........+..... .. .... ........+..+|||+|||..+++++|+++|++|| .|..
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 9998644321110000000 00 0000 00011123468999999999999999999999999 9999
Q ss_pred EEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccC-CeEEEEEEccc
Q 002093 604 YHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQAVL 651 (967)
Q Consensus 604 v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~-Gr~I~V~~a~~ 651 (967)
|.|+.+ .+|+|||+|.+.++|.+|+..|||..|+ |+.|.|.++.+
T Consensus 151 v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 151 FKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 998765 4899999999999999999999999999 99999999865
No 24
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.90 E-value=4.8e-23 Score=207.45 Aligned_cols=161 Identities=16% Similarity=0.211 Sum_probs=137.8
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC----CCCEEEEeecCcchHHHHHHHhCCCccC---CeEEEE
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH----EEPCAFIEYVDQLVTPKAIAGLNGLKVG---GQVLTA 646 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~----skG~aFVeF~~~e~A~~Al~~LnG~~~~---Gr~I~V 646 (967)
.++|||+|||..+++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|.+|+..|+|..+. ++.|.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 578999999999999999999999999999999988543 5899999999999999999999998775 677888
Q ss_pred EEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC
Q 002093 647 VQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY 726 (967)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~ 726 (967)
.++.+.... ..+.+.|+|.||.... ++ ++|+++|++||.|+.|.|+++
T Consensus 83 ~~~~~~~~~--------------------~~~~~~l~v~nl~~~~-----t~-------~~l~~~F~~~G~i~~v~~~~~ 130 (175)
T 3nmr_A 83 KPADSEKNN--------------------AVEDRKLFIGMISKKC-----TE-------NDIRVMFSSFGQIEECRILRG 130 (175)
T ss_dssp EECGGGCCS--------------------CGGGSEEEEESCCTTC-----CH-------HHHHHHHGGGSCEEEEEEEEC
T ss_pred ccccccccc--------------------cCCCCeEEEcCCCCcC-----CH-------HHHHHHHHhCCCEEEEEEEEC
Confidence 777543321 1245789999996532 33 579999999999999999999
Q ss_pred CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCC---CcceeEE
Q 002093 727 GDSNISTIQACEGNENTASAGVGQNLTNDETNE---KGERLEE 766 (967)
Q Consensus 727 ~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~---r~~~v~~ 766 (967)
..|..+|||||+|.+.++|.+|++.|||..+.+ +.+.|..
T Consensus 131 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 131 PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 889999999999999999999999999998874 7777754
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.90 E-value=1.7e-23 Score=226.71 Aligned_cols=154 Identities=18% Similarity=0.261 Sum_probs=136.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+++|+++|+++|+.|| .|..+.++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G------------~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYG------------EPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGC------------CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC------------CEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 4557999999999999999999999999 34566667889999999999999999999 9999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEE
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAF 618 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aF 618 (967)
|.|.+.. ...+|||+|||..+|+++|+++|+.||.|..|.|+.+. +.++||||
T Consensus 88 l~v~~a~--------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~af 141 (261)
T 3sde_A 88 LRIRFAT--------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGF 141 (261)
T ss_dssp CEEEECC--------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEE
T ss_pred eEeeecc--------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEE
Confidence 9998421 25689999999999999999999999999999998884 34689999
Q ss_pred EeecCcchHHHHHHHhC-CCccC---CeEEEEEEcccC
Q 002093 619 IEYVDQLVTPKAIAGLN-GLKVG---GQVLTAVQAVLD 652 (967)
Q Consensus 619 VeF~~~e~A~~Al~~Ln-G~~~~---Gr~I~V~~a~~~ 652 (967)
|+|.+.++|.+|+..|| |..+. |++|.|.++.+.
T Consensus 142 V~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 142 VEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred EEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999999999999994 55554 999999998654
No 26
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.89 E-value=9.9e-23 Score=209.45 Aligned_cols=170 Identities=13% Similarity=0.191 Sum_probs=140.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+|+++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3468999999999999999999999999999999998854 4589999999999999999975 999999999999998
Q ss_pred ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-C
Q 002093 650 VLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-D 728 (967)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~ 728 (967)
.+...... +....+.+.|+|.||.... ++ ++|+++|++||.|+.|.|+.+. +
T Consensus 90 ~~~~~~~~---------------~~~~~~~~~l~V~nLp~~~-----t~-------~~l~~~F~~~G~i~~v~i~~~~~~ 142 (196)
T 1l3k_A 90 VSREDSQR---------------PGAHLTVKKIFVGGIKEDT-----EE-------HHLRDYFEQYGKIEVIEIMTDRGS 142 (196)
T ss_dssp CC--------------------------CCSEEEEECCTTTC-----CH-------HHHHHHHTTTSCEEEEEEEECTTT
T ss_pred cCcccccc---------------cccCCCcceEEEeCCCCCC-----CH-------HHHHHHHhcCCCeEEEEEeecCCC
Confidence 65432211 0112356889999986532 33 5799999999999999999885 7
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeecc
Q 002093 729 SNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDH 770 (967)
Q Consensus 729 g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~~ 770 (967)
|..+|||||+|.+.++|.+|+.. +|..|+|+.+.|..+...
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred CCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 88999999999999999999987 799999999999887653
No 27
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.89 E-value=1.1e-22 Score=212.27 Aligned_cols=174 Identities=16% Similarity=0.234 Sum_probs=143.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4789999999999999999999999999999998874 45799999999999999999999999999999999988754
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC-CCCC
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSN 730 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~-~~g~ 730 (967)
....... .. .......+.++|+|.||.... ++ +||+++|++||.|+.|.|+++ .+|.
T Consensus 108 ~~~~~~~-----~~-----~~~~~~~~~~~l~v~nlp~~~-----t~-------~~l~~~f~~~G~v~~v~i~~~~~~g~ 165 (216)
T 2qfj_A 108 IGQAQPI-----ID-----QLAEEARAFNRIYVASVHQDL-----SD-------DDIKSVFEAFGKIKSATLARDPTTGK 165 (216)
T ss_dssp CGGGHHH-----HH-----HHHHHHTTSCEEEEECCCTTC-----CH-------HHHHHHHTTSSCEEEEEEEECTTTCC
T ss_pred ccccchh-----hh-----hhhcccCCCcEEEEeCCCCcC-----CH-------HHHHHHHhccCCeeEEEEEecCCCCC
Confidence 3211000 00 000012356889999986532 22 689999999999999999988 4788
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 731 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 731 ~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
.+|||||+|.+.++|.+|+..|||..|.|+.+.|..+..
T Consensus 166 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 166 HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 899999999999999999999999999999999988765
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=8.2e-23 Score=213.70 Aligned_cols=175 Identities=18% Similarity=0.236 Sum_probs=137.3
Q ss_pred CCceEEEcCCC-cccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 573 SPHKIFIGGIS-RTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 573 ~~~~L~V~nLp-~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
+..+|||+||| ..+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|.+|++.|||..|.|+.|.|.++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 35789999999 89999999999999999999999876 589999999999999999999999999999999999864
Q ss_pred CCCcCCC-----CCCCC---CCCCCCC--------CCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcC
Q 002093 652 DGSIMDN-----SGNPP---FHGIPKH--------ALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARF 715 (967)
Q Consensus 652 ~~~~~~~-----~~~~~---~~~i~~~--------~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kF 715 (967)
....+.. .+... +.+.+.. .......|+++|+|.||.... ++ +||+++|++|
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~-----t~-------~~L~~~F~~~ 147 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEV-----TE-------ENFFEICDEL 147 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTC-----CH-------HHHHHHHHHH
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCC-----CH-------HHHHHHHHhc
Confidence 3321100 00000 0000000 001123578899999996532 33 5799999999
Q ss_pred CCe--EEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 002093 716 GSV--KSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGER 763 (967)
Q Consensus 716 G~V--~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~ 763 (967)
|.| ..|.|+.+. +..+|||||+|.+.++|.+||..|||.+|.+....
T Consensus 148 G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 148 GVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp TCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred CCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 999 899998775 55569999999999999999999999999998643
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.89 E-value=4.2e-22 Score=205.07 Aligned_cols=178 Identities=19% Similarity=0.256 Sum_probs=142.4
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCe
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAF----G-------PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ 642 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~----G-------~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr 642 (967)
.++|||+|||..+++++|+++|++| | .|..+.+.. ++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----TTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----CCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 5799999999999999999999999 5 566666533 5899999999999999999 8999999999
Q ss_pred EEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEE
Q 002093 643 VLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVN 722 (967)
Q Consensus 643 ~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~ 722 (967)
.|.|.++.+.......... +....+.........+.+.|+|.||.... ++ ++|+++|++||.|..|.
T Consensus 79 ~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-----~~-------~~l~~~f~~~G~v~~~~ 145 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSEN-PSVYVPGVVSTVVPDSAHKLFIGGLPNYL-----ND-------DQVKELLTSFGPLKAFN 145 (198)
T ss_dssp EEEEECCCCCCCCCCSSSC-SSCCCTTSSCCCSSCCCCEEEEECCCTTC-----CH-------HHHHHHHHTBSCEEEEE
T ss_pred eEEEeCCCCCCCCCCCcCC-CcCCCCCCccCCCCCCCCEEEEeCCCCCC-----CH-------HHHHHHHHHcCCccEEE
Confidence 9999998665332211111 01111111112234567899999997532 32 57999999999999999
Q ss_pred EecCC-CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 723 VVKYG-DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 723 I~r~~-~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
|+++. .|..+|||||+|.+.++|.+|+..|||..|.|+.+.|..+..
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 99885 888999999999999999999999999999999999987654
No 30
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.89 E-value=2.1e-22 Score=202.55 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=135.5
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCe
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAF----G-------PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ 642 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~----G-------~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr 642 (967)
.++|||+|||..+|+++|+++|++| | .|..+.+.. ++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET----TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC----CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 5789999999999999999999999 6 677777654 4899999999999999999 8999999999
Q ss_pred EEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEE
Q 002093 643 VLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVN 722 (967)
Q Consensus 643 ~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~ 722 (967)
.|.|.++.+... ......|+|.|+.... ++ +||+++|++||.|..|.
T Consensus 79 ~i~v~~~~~~~~---------------------~~~~~~l~v~nlp~~~-----t~-------~~l~~~f~~~G~v~~v~ 125 (172)
T 2g4b_A 79 SLKIRRPHDYQP---------------------LPGAHKLFIGGLPNYL-----ND-------DQVKELLTSFGPLKAFN 125 (172)
T ss_dssp ECEEECCSSCCC---------------------CTTTTCEEEECCCTTC-----CH-------HHHHHHHHTTSCEEEEE
T ss_pred eeeecCCcccCC---------------------CCCCCEEEEEcCCCcC-----CH-------HHHHHHHHhcCCceEEE
Confidence 999988744321 1235778999986532 32 57999999999999999
Q ss_pred EecCC-CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEe
Q 002093 723 VVKYG-DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 767 (967)
Q Consensus 723 I~r~~-~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~ 767 (967)
|+++. +|..+|||||+|.+.++|.+|+..|||..|.|+.+.|..+
T Consensus 126 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 126 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99985 8889999999999999999999999999999999998764
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.88 E-value=1.1e-21 Score=214.21 Aligned_cols=179 Identities=16% Similarity=0.222 Sum_probs=139.0
Q ss_pred CCCceEEEcCCCcccCHHHHH----HHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVM----EIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~----e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
...++|||+|||..+++++|+ ++|++||.|..|.|.+ .+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 357899999999999999966 8999999999999876 45579999999999999999999999999999999999
Q ss_pred EcccCCCcCC----C---------------------------------------------------------CCC-----
Q 002093 648 QAVLDGSIMD----N---------------------------------------------------------SGN----- 661 (967)
Q Consensus 648 ~a~~~~~~~~----~---------------------------------------------------------~~~----- 661 (967)
++........ . .+.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 9855432000 0 000
Q ss_pred ----CCCCCC--------------------CCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCC
Q 002093 662 ----PPFHGI--------------------PKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGS 717 (967)
Q Consensus 662 ----~~~~~i--------------------~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~ 717 (967)
.+.++. +.........++++|+|.||... +++ ++|+++|++||.
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-----~~~-------~~l~~~F~~~G~ 233 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEE-----TNE-------LMLSMLFNQFPG 233 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCc-----CCH-------HHHHHHHHhcCC
Confidence 000000 00000012336788999999642 122 579999999999
Q ss_pred eEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC-CCcceeEEe
Q 002093 718 VKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN-EKGERLEEV 767 (967)
Q Consensus 718 V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~-~r~~~v~~~ 767 (967)
|+.|.|+.+. +|||||+|.+.++|.+|+..|||..|. |+.+.|..+
T Consensus 234 i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 234 FKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred eEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 9999999654 579999999999999999999999999 998888764
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.88 E-value=1.2e-21 Score=207.89 Aligned_cols=178 Identities=15% Similarity=0.213 Sum_probs=140.4
Q ss_pred CCCceEEEcCCCc-ccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~-~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
.+.++|||+|||. .+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3568999999999 99999999999999999999998873 8999999999999999999999999999999999986
Q ss_pred cCCCcCCCCC----C-------C---CCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCC
Q 002093 651 LDGSIMDNSG----N-------P---PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFG 716 (967)
Q Consensus 651 ~~~~~~~~~~----~-------~---~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG 716 (967)
+......... . . .+.............++++|+|.||.... ++ ++|+++|++||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-----t~-------~~l~~~f~~~G 176 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV-----SE-------EDLKVLFSSNG 176 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTC-----CH-------HHHHHHHHTTS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccC-----CH-------HHHHHHHHHcC
Confidence 5422110000 0 0 00000000011123567899999996522 32 57999999999
Q ss_pred -CeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC-CCcceeEEee
Q 002093 717 -SVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN-EKGERLEEVT 768 (967)
Q Consensus 717 -~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~-~r~~~v~~~~ 768 (967)
.|..|.|... .+|||||+|.+.++|.+|+..|||..|+ |+.+.|..+.
T Consensus 177 ~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 177 GVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 9999999653 3679999999999999999999999999 9999887754
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.88 E-value=7.7e-22 Score=203.87 Aligned_cols=176 Identities=15% Similarity=0.223 Sum_probs=139.7
Q ss_pred CceEEEcCCCc-ccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 574 PHKIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 574 ~~~L~V~nLp~-~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
.++|||+|||. .+++++|+++|++||.|..|.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 57999999999 99999999999999999999998873 899999999999999999999999999999999998654
Q ss_pred CCcCCCCCC-----------C---CCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCC-C
Q 002093 653 GSIMDNSGN-----------P---PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFG-S 717 (967)
Q Consensus 653 ~~~~~~~~~-----------~---~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG-~ 717 (967)
......... . .+.............|+++|+|.||.... ++ ++|+++|++|| .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~-----~~-------~~l~~~f~~~G~~ 147 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV-----SE-------EDLKVLFSSNGGV 147 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTC-----CH-------HHHHHHHHHTTSC
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCC-----CH-------HHHHHHHHHcCCC
Confidence 321110000 0 00000000011123568999999996532 22 57999999999 9
Q ss_pred eEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC-CCcceeEEee
Q 002093 718 VKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN-EKGERLEEVT 768 (967)
Q Consensus 718 V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~-~r~~~v~~~~ 768 (967)
|..|.|..+. +|||||+|.+.++|.+|+..|||..|+ |+.+.|..+.
T Consensus 148 v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 148 VKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred ceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 9999997643 689999999999999999999999999 9999887754
No 34
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.87 E-value=1.7e-22 Score=202.29 Aligned_cols=159 Identities=10% Similarity=0.154 Sum_probs=137.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+|||..+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 4789999999999999999999999999999999874 45799999999999999999984 6789999999988754
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CCC
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSN 730 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g~ 730 (967)
... ..+...|+|.||.... ++ ++|+++|++||.|+.|.|+.+. +|.
T Consensus 81 ~~~---------------------~~~~~~l~V~nlp~~~-----t~-------~~l~~~F~~~G~i~~~~i~~~~~~g~ 127 (167)
T 2cjk_A 81 RDE---------------------QDKTGKIFVGGIGPDV-----RP-------KEFEEFFSQWGTIIDAQLMLDKDTGQ 127 (167)
T ss_dssp HHH---------------------HHHCEEEEEEEECTTC-----CH-------HHHHHHHHTTSCCSEEECCCSSSSST
T ss_pred hhh---------------------ccCCCeEEECCCCCCC-----CH-------HHHHHHHHhCccEEEEEEEEcCCCCc
Confidence 321 1235789999986532 33 5799999999999999999884 788
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 731 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 731 ~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
.+|||||+|.+.++|.+|++ |||..|+|+.+.|..+.
T Consensus 128 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 128 SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp TSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred cceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 99999999999999999998 99999999999987754
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.86 E-value=2.4e-21 Score=209.75 Aligned_cols=154 Identities=15% Similarity=0.154 Sum_probs=134.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|||..+|+++|+++|++||.|..|.|.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 3457999999999999999999999999999999865 489999999999999999999999999999999998842
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCc
Q 002093 652 DGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNI 731 (967)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~ 731 (967)
...|+|.||.... ++ ++|+++|++||.|+.|.|+.+.+|..
T Consensus 96 ---------------------------~~~l~v~nl~~~~-----t~-------~~l~~~F~~~G~i~~v~i~~~~~g~~ 136 (261)
T 3sde_A 96 ---------------------------GAALTVKNLSPVV-----SN-------ELLEQAFSQFGPVEKAVVVVDDRGRA 136 (261)
T ss_dssp ---------------------------SSEEEEESCCTTC-----CH-------HHHHHHHGGGSCEEEEEEEEETTSCE
T ss_pred ---------------------------CCcccccCCCCCC-----CH-------HHHHHHHHhcCCeEEEEeeeCCCCCc
Confidence 3578999986432 33 57999999999999999999989999
Q ss_pred ceeEEEEeCCHHHHHHHHHHhCCC-ccC---CCcceeEEee
Q 002093 732 STIQACEGNENTASAGVGQNLTND-ETN---EKGERLEEVT 768 (967)
Q Consensus 732 ~G~gFVeF~~~e~A~~Ai~~LnG~-~~~---~r~~~v~~~~ 768 (967)
+|||||+|.+.++|.+|+..|||. .+. ++.+.|.+..
T Consensus 137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 999999999999999999999554 443 8888776654
No 36
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.86 E-value=6.6e-22 Score=199.94 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=134.0
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEee-cCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEV-NEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~-d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
+...++|||+|||..+++++|+++|..||.+..+.+.. ..+.++|||||+|.+.++|.+|++ |||..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 44578999999999999999999999998765522211 234579999999999999999995 9999999999999998
Q ss_pred ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Q 002093 650 VLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDS 729 (967)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g 729 (967)
.+.... ...+.+.|+|.||.... ++ ++|+++|++||.|..+ ...+
T Consensus 89 ~~~~~~-------------------~~~~~~~l~v~nlp~~~-----t~-------~~l~~~F~~~g~v~~~----~~~~ 133 (175)
T 1fje_B 89 KGRDSK-------------------KVRAARTLLAKNLSFNI-----TE-------DELKEVFEDALEIRLV----SQDG 133 (175)
T ss_dssp CCSSCS-------------------TTGGGGEEEEESCCSSC-----CH-------HHHHHHCTTCSEEEEE----CSSS
T ss_pred CCcccc-------------------ccccCCEEEEeCCCCCC-----CH-------HHHHHHHHhcCeEEEe----cCCC
Confidence 654321 12356889999996532 33 5799999999998766 5677
Q ss_pred CcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEee
Q 002093 730 NISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 768 (967)
Q Consensus 730 ~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~ 768 (967)
..+|||||+|.+.++|.+|+..|||..|.|+.+.|..+.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 889999999999999999999999999999999887754
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=2.4e-17 Score=164.49 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=104.3
Q ss_pred cCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCccc
Q 002093 508 QREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTL 586 (967)
Q Consensus 508 ~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~ 586 (967)
..++|||||+|.+.++|.+|+. +++....+..+.+......... .................+|||+|||..+
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV-------TEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE-------ECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc-------cccccccccccCCCCCCEEEEeCCCCCC
Confidence 3689999999999999999998 7763332222222211000000 0000000111123346899999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 587 SSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 587 teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+...
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999999999874 45799999999999999999999999999999999999976543
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=4e-17 Score=161.71 Aligned_cols=137 Identities=16% Similarity=0.193 Sum_probs=110.3
Q ss_pred cCCCcEEEEEEcCHHHHHHHHH-c-cCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcc
Q 002093 508 QREKGQAFVEFLTAEDASAALC-C-DGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRT 585 (967)
Q Consensus 508 ~~skG~aFVeF~~~e~A~~Al~-l-ng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~ 585 (967)
..-+|+++|+|.++++|.+|+. | ||..+.| +|.+........... .................++|||+|||..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTE----GSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEEC----SSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccc----ccccccccccccCCCCCCEEEEeCCCCC
Confidence 4568999999999999999998 9 9999999 999985432211100 0000000111222345689999999999
Q ss_pred cCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 586 LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 586 ~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999999887 7999999999999999999999999999999999998664
No 39
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.66 E-value=2.1e-16 Score=147.33 Aligned_cols=91 Identities=31% Similarity=0.330 Sum_probs=83.9
Q ss_pred CCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCC---CcceeEEEEeCCHHHHHHHHHHh
Q 002093 676 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDS---NISTIQACEGNENTASAGVGQNL 752 (967)
Q Consensus 676 ~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g---~~~G~gFVeF~~~e~A~~Ai~~L 752 (967)
+.|++||+|.||+++.+| .++.+|++|.+||+++|++||.|++|.|+++..+ ..+|++||+|.+.++|.+|+..|
T Consensus 2 g~ps~vl~L~Nm~~~~~l--~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEEL--LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp CSCCSEEEEESSCCGGGS--SSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHc--cChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 468999999999999999 5899999999999999999999999999988643 57899999999999999999999
Q ss_pred CCCccCCCcceeEEee
Q 002093 753 TNDETNEKGERLEEVT 768 (967)
Q Consensus 753 nG~~~~~r~~~v~~~~ 768 (967)
||+.|+|+.+.+....
T Consensus 80 nG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 80 TGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTCEETTEECEEEEEC
T ss_pred CCCEeCCCEEEEEEeC
Confidence 9999999999987653
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=1.2e-15 Score=144.33 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
..+|||+|||+.+|+++|+++|+.||.+..+. .+.+ .+.++|||||+|.+.++|..||. |||..|.|++|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~------i~~d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCK------VVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEEE--TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEE------Eeec--CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45899999999999999999999999643321 1122 34578999999999999999998 999999999999
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHH
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSK 589 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~tee 589 (967)
|.+........ ...........+|||+|||+.+|++
T Consensus 77 V~~a~~~~~~~------------~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 77 VGRFKSRKERE------------AELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp EEESSCCCC---------------------------------------
T ss_pred EEECCCccccc------------cccccccCCCCceEeCCCCCCcccc
Confidence 98543221110 0000112234679999999999875
No 41
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.59 E-value=2.5e-15 Score=142.07 Aligned_cols=89 Identities=21% Similarity=0.118 Sum_probs=82.1
Q ss_pred CCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCC
Q 002093 676 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTND 755 (967)
Q Consensus 676 ~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~ 755 (967)
+.|++||+|.||+++.++ .++++|++|.+||+++|++||.|++|.|+++. .+|++||+|.+.++|.+|++.|||+
T Consensus 4 p~ps~vv~L~Nm~~~~e~--~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTE--EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCSEEEEESSCCTTTC--CSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEECCCChHHc--cChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 357999999999999998 59999999999999999999999999998864 4899999999999999999999999
Q ss_pred ccCCCcceeEEeec
Q 002093 756 ETNEKGERLEEVTD 769 (967)
Q Consensus 756 ~~~~r~~~v~~~~~ 769 (967)
.|+|+.+.+.....
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999987643
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=2.3e-15 Score=142.49 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=75.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
...+|||+|||..+++++|+++|++||.|.+|.|+.+.+.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 45789999999999999999999999999999999998778999999999999999999999999999999999998764
Q ss_pred C
Q 002093 653 G 653 (967)
Q Consensus 653 ~ 653 (967)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 43
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=6.1e-15 Score=146.95 Aligned_cols=147 Identities=13% Similarity=0.081 Sum_probs=108.2
Q ss_pred EEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEE
Q 002093 603 AYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVL 682 (967)
Q Consensus 603 ~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl 682 (967)
.+.|+.+...++|||||+|.+.++|.+|+..+++....+..+.+............. ..........+...|
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS--------HHHHHHMDVEGMTSL 73 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC--------CCSSCCCCCCBCCEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc--------cccccccCCCCCCEE
Confidence 466777777789999999999999999999888754433333332221110000000 000011123457889
Q ss_pred EccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 002093 683 KLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNISTIQACEGNENTASAGVGQNLTNDETNEKG 761 (967)
Q Consensus 683 ~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~ 761 (967)
+|.||.... ++ +||+++|++||.|+.|.|+++. +|..+|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 74 ~v~nl~~~~-----~~-------~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 74 KVDNLTYRT-----SP-------DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp EEESCCTTC-----CH-------HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred EEeCCCCCC-----CH-------HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 999996532 33 5799999999999999999884 7889999999999999999999999999999999
Q ss_pred ceeEEeec
Q 002093 762 ERLEEVTD 769 (967)
Q Consensus 762 ~~v~~~~~ 769 (967)
+.|..+..
T Consensus 142 l~v~~a~~ 149 (158)
T 2kn4_A 142 LRVQMARY 149 (158)
T ss_dssp EEEEEECC
T ss_pred EEEEECCC
Confidence 99988765
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.57 E-value=5.4e-15 Score=136.21 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=73.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++|||+|||..+|+++|+++|++||.|..|.|+++.. .++|||||+|.+.++|.+|++.|||..|+|+.|.|.+|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 357899999999999999999999999999999998854 468999999999999999999999999999999999997
Q ss_pred c
Q 002093 651 L 651 (967)
Q Consensus 651 ~ 651 (967)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 45
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.56 E-value=5.4e-16 Score=146.65 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=73.6
Q ss_pred cccccccccccCCCcchhcccccccCCCCccccccccccccccccccCCCCCCCCCCC-Cccc--------ccceEEEEe
Q 002093 858 CNIQLEHMSEENKSSAKEDLNLEEVNGNSEAFTGASNEMGMQSSAVENGDNENQDPNQ-GHIF--------EPGCVFVEY 928 (967)
Q Consensus 858 ~~i~~~c~~~~n~f~~~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~e~~~-~~v~--------~~G~VyVkF 928 (967)
++|++.|++|.|||++..+.. +.+ ..++.+|+.++|++ |.|. ..|++||+|
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d-~~~-------------------~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f 62 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEE-VGW-------------------DTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKC 62 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCS-TTH-------------------HHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEEC
T ss_pred CCCCCcEEEEECCCChHHccC-hhH-------------------HHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEE
Confidence 458899999999999987433 111 14556666667765 4443 259999999
Q ss_pred cCHHHHHHHHHHhhccccCCceEEEEecChhhHHhhcCC
Q 002093 929 MRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRARFSK 967 (967)
Q Consensus 929 ~s~eaA~~A~~aLhGR~FagR~I~A~yv~~~~Y~~~Fp~ 967 (967)
.+.++|.+|+++||||||+||+|.|.|.+...|+.+||.
T Consensus 63 ~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 63 PSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPD 101 (114)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGG
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCcc
Confidence 999999999999999999999999999999999999984
No 46
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.52 E-value=5.1e-14 Score=139.29 Aligned_cols=142 Identities=16% Similarity=0.069 Sum_probs=108.0
Q ss_pred EeecCCCCCCEEEEeecCcchHHHHHHHh-CCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCeEEEc
Q 002093 606 FEVNEDHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKL 684 (967)
Q Consensus 606 l~~d~~~skG~aFVeF~~~e~A~~Al~~L-nG~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~i~~~~~~~~~~ps~vl~L 684 (967)
|..+...-+|+++|+|.+.++|.+|++.| ||..+.| .|.+.++............ ...........+.+.|+|
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~V 78 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-----HHHHMHRDSCPLDCKVYV 78 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-----CCCCSCSSSSTTSCEEEE
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-----ccccccccCCCCCCEEEE
Confidence 33343345899999999999999999999 9999999 9999877542211100000 000011222456789999
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCccee
Q 002093 685 KNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERL 764 (967)
Q Consensus 685 ~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v 764 (967)
.||..... + ++|+++|++||.|+.|.|+++ .+|||||+|.+.++|.+|+..|||..|.|+.+.|
T Consensus 79 ~nl~~~~t-----~-------~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 79 GNLGNNGN-----K-------TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp ESCCSCCS-----C-------HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred eCCCCCCC-----H-------HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 99965333 2 578999999999999999986 5789999999999999999999999999999999
Q ss_pred EEeec
Q 002093 765 EEVTD 769 (967)
Q Consensus 765 ~~~~~ 769 (967)
..+..
T Consensus 143 ~~a~~ 147 (150)
T 2i2y_A 143 ELSNG 147 (150)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 77643
No 47
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=4.2e-14 Score=131.79 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=75.4
Q ss_pred CCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC--CCCcceeEEEEeCCHHHHHHHHHHhC
Q 002093 676 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG--DSNISTIQACEGNENTASAGVGQNLT 753 (967)
Q Consensus 676 ~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~--~g~~~G~gFVeF~~~e~A~~Ai~~Ln 753 (967)
+.|++||+|.||+++.+| . .++.+||+++|++||.|++|.|+++. .+.++|||||+|.+.++|.+|+..||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l---~----dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEV---D----EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp GSCCSEEEEESSSCSCCC----------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCChHHh---h----HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC
Confidence 468999999999998877 2 24678999999999999999999874 36789999999999999999999999
Q ss_pred CCccCCCcceeEEee
Q 002093 754 NDETNEKGERLEEVT 768 (967)
Q Consensus 754 G~~~~~r~~~v~~~~ 768 (967)
|+.|+|+.+.+....
T Consensus 78 G~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 78 GRYFGGRVVKACFYN 92 (105)
T ss_dssp TCEETTEECEEEECC
T ss_pred CCEECCcEEEEEEcC
Confidence 999999999887753
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=127.22 Aligned_cols=83 Identities=22% Similarity=0.502 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+...++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 45689999999999999999999999999999999998777899999999999999999999999999999999999976
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 93 ~~~ 95 (103)
T 2cqi_A 93 PSS 95 (103)
T ss_dssp TTC
T ss_pred Ccc
Confidence 543
No 49
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=2.5e-14 Score=136.01 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=75.6
Q ss_pred CCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----CCcceeEEEEeCCHHHHHHHHHH
Q 002093 677 KPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD-----SNISTIQACEGNENTASAGVGQN 751 (967)
Q Consensus 677 ~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~-----g~~~G~gFVeF~~~e~A~~Ai~~ 751 (967)
.|++||+|.||+++++|. ++|.+||+++|++||.|++|.|+++.. +.++|++||+|.+.++|.+|+..
T Consensus 18 ~ps~vl~L~Nm~~~~el~-------ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~ 90 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDID-------DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA 90 (118)
T ss_dssp HSCCEEEEESCSCGGGCC-------TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHH-------HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH
Confidence 479999999999998872 247799999999999999999998743 45779999999999999999999
Q ss_pred hCCCccCCCcceeEEee
Q 002093 752 LTNDETNEKGERLEEVT 768 (967)
Q Consensus 752 LnG~~~~~r~~~v~~~~ 768 (967)
|||+.|+|+.+.+....
T Consensus 91 LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 91 LNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HTTCEETTEECEEEEEC
T ss_pred HCCCEECCcEEEEEEcC
Confidence 99999999999987753
No 50
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.49 E-value=1.8e-14 Score=140.46 Aligned_cols=122 Identities=10% Similarity=0.121 Sum_probs=77.1
Q ss_pred cEEEEEEcCHHHHHHHHH-ccCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHH
Q 002093 512 GQAFVEFLTAEDASAALC-CDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKM 590 (967)
Q Consensus 512 G~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teed 590 (967)
-|+|++|.+...|..||+ ++|-...|+.- +. +.. +........+|||+|||..+++++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~----~~~----------------~~~~~~~~~~l~V~nLp~~~te~~ 63 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS----YGR----------------PPPDVEGMTSLKVDNLTYRTSPDT 63 (135)
T ss_dssp -------------------------------CC----SCC----------------SCSSGGGCCCEEEECCCSSCHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CC----cCC----------------CCCCCCCCCEEEEeCCCCCCCHHH
Confidence 367889999999999999 88866555431 11 000 011123467899999999999999
Q ss_pred HHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 591 VMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 591 L~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999998874 45799999999999999999999999999999999999976544
No 51
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=1.5e-14 Score=167.63 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.+.++|||+|||..+|+++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 446899999999999999999999999999999999874 456999999999999999999999999999999999999
Q ss_pred ccCC
Q 002093 650 VLDG 653 (967)
Q Consensus 650 ~~~~ 653 (967)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7644
No 52
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.49 E-value=2.9e-14 Score=131.30 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
...+|||+|||+++|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+|+. |||..|.|++|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAK------LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeE------eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 456899999999999999999999999644332 33556678999999999999999999999 99999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
+|.+
T Consensus 92 ~V~~ 95 (99)
T 4fxv_A 92 KVSY 95 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=129.58 Aligned_cols=80 Identities=10% Similarity=0.149 Sum_probs=72.3
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcC-CeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHh-CCCccCCeEEEEEEcc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFG-PLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAVQAV 650 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G-~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~L-nG~~~~Gr~I~V~~a~ 650 (967)
++|||+|||..+|+++|+++|++|| .|.+|+|++++ +.++|||||+|.+.++|.+|++.| ++..|+|+.|.|.+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 79999998875 457999999999999999999987 5678999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
|...
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 54
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.48 E-value=1e-13 Score=123.63 Aligned_cols=84 Identities=36% Similarity=0.671 Sum_probs=72.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
.+.++|||+|||+.+|+++|+++|+.||.+.|+..... ..|.++.+..++|||||+|.+.++|.+|+.|||..|.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~-~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPG-NPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSS-CSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCC-CcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 45689999999999999999999999975555433222 36778888888999999999999999999999999999999
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
+|.+|
T Consensus 83 ~V~rp 87 (87)
T 2hzc_A 83 KIRRP 87 (87)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99875
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.1e-13 Score=125.87 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=78.0
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....++|||+|||..+++++|+++|++||.|..|.|+.+...++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34578999999999999999999999999999999999877789999999999999999999999999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7543
No 56
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=130.01 Aligned_cols=81 Identities=7% Similarity=0.142 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.+..+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999999999999864 46899999999999999999999999999999999998
Q ss_pred ccC
Q 002093 650 VLD 652 (967)
Q Consensus 650 ~~~ 652 (967)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 543
No 57
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=125.47 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCceEEEcCCCcccCHHHHH----HHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVM----EIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~----e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
...+|||+|||..+++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46799999999999999999 99999999999999988766 99999999999999999999999999999999999
Q ss_pred cccCC
Q 002093 649 AVLDG 653 (967)
Q Consensus 649 a~~~~ 653 (967)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 96644
No 58
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.46 E-value=1e-13 Score=139.49 Aligned_cols=139 Identities=16% Similarity=0.199 Sum_probs=75.5
Q ss_pred EEEcCHHHHHHHHH-ccCceee--cceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHH
Q 002093 516 VEFLTAEDASAALC-CDGCSFS--GSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVM 592 (967)
Q Consensus 516 VeF~~~e~A~~Al~-lng~~l~--Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~ 592 (967)
.+|.+.++|..|+. |++.... |+.+.+................+...............++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78999999999999 8886654 55554432110000000000000000000011112345789999999999999999
Q ss_pred HHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 593 EIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 593 e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..|||..|.|+.|.|.++.+...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999998843 4589999999999999999999999999999999999976543
No 59
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.4e-13 Score=122.82 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
+..|||+||++.+||++|+++|.+|| +|.++.+..++|||||+|.+.++|..|+. ||+..|.|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G------------~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG------------PLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC------------CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 45899999999999999999999999 56777777799999999999999999999 999999999999
Q ss_pred EeCCC
Q 002093 542 IKRPK 546 (967)
Q Consensus 542 V~rp~ 546 (967)
|..++
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 98653
No 60
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.46 E-value=1.4e-13 Score=129.75 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=83.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. -...+.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~---------i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIR---------VGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE---------EECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---------EeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4567999999999999999999999999533221 11236679999999999999999999 9999999999
Q ss_pred eEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHHhcCC
Q 002093 540 LKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVCAFGP 600 (967)
Q Consensus 540 l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fsk~G~ 600 (967)
|.|.+...... ..+++...++++|.++|++||.
T Consensus 77 l~v~~a~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 77 LVVLYYNANRA----------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CEEEECCHHHH----------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCChh----------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 99984221100 0467788899999999999995
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.46 E-value=1.3e-13 Score=124.45 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+.+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 35689999999999999999999999999999999987666799999999999999999999999999999999999976
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 86 ~~ 87 (92)
T 2dgv_A 86 AS 87 (92)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 62
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=125.31 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=65.9
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhh-hhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-c-cCceeecce
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFL-LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-C-DGCSFSGSI 539 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG-~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-l-ng~~l~Gr~ 539 (967)
+++|||+|||+++|+++|+++|++|| .+..+ ..+.+..++.++|||||+|.+.++|.+||+ + +++.|.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v------~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREV------RLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBC------CSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEE------EEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 36899999999999999999999999 43332 244667789999999999999999999998 6 567899999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 75 i~V~~a 80 (91)
T 2lxi_A 75 VSMHYS 80 (91)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 999853
No 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-13 Score=123.32 Aligned_cols=83 Identities=20% Similarity=0.420 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356899999999999999999999999999999998875 446899999999999999999999999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 77654
No 64
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=122.52 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=72.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...+|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46799999999999999999999999999999999874 3458999999999999999999999999999999999986
Q ss_pred c
Q 002093 651 L 651 (967)
Q Consensus 651 ~ 651 (967)
+
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 65
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=128.15 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=76.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....++|||+|||..+++++|+++|++||.|..|.|+.+.+.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34578999999999999999999999999999999998877789999999999999999999999999999999999986
Q ss_pred cC
Q 002093 651 LD 652 (967)
Q Consensus 651 ~~ 652 (967)
+.
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.45 E-value=2.2e-13 Score=120.38 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=72.6
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
.+|||+|||..+++++|+++|++||.|..+.++.+.. .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5799999999999999999999999999999988843 45899999999999999999999999999999999999764
No 67
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.45 E-value=1.5e-13 Score=129.57 Aligned_cols=81 Identities=15% Similarity=0.342 Sum_probs=74.2
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
+...++|||+|||..+++++|+++|++||.|..|.|+.+. .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456899999999999999999999999999999998763 359999999999999999999999999999999999996
Q ss_pred cC
Q 002093 651 LD 652 (967)
Q Consensus 651 ~~ 652 (967)
+.
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=125.24 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=75.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-----CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-----HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-----~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
..++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 468999999999999999999999999999999988754 458999999999999999999999999999999999
Q ss_pred EcccCCC
Q 002093 648 QAVLDGS 654 (967)
Q Consensus 648 ~a~~~~~ 654 (967)
++.+...
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9976544
No 69
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.44 E-value=2.6e-13 Score=120.47 Aligned_cols=78 Identities=17% Similarity=0.350 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.++.+.. .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999999999988744 35999999999999999999999999999999999987
No 70
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=125.96 Aligned_cols=78 Identities=13% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCC--eeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCC----ccCCeEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGP--LKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGL----KVGGQVL 644 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~--V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~----~~~Gr~I 644 (967)
.-++|||+|||+.+|+++|+++|++||. |.+|+|++|+ +.++|||||+|.+.++|.+|++.|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4579999999999999999999999995 6689999885 457999999999999999999999996 5899999
Q ss_pred EEEEcc
Q 002093 645 TAVQAV 650 (967)
Q Consensus 645 ~V~~a~ 650 (967)
.|.+|.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999985
No 71
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.44 E-value=5.8e-13 Score=125.41 Aligned_cols=85 Identities=14% Similarity=0.315 Sum_probs=77.1
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
.....+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999884 34589999999999999999999999999999999999
Q ss_pred cccCCCc
Q 002093 649 AVLDGSI 655 (967)
Q Consensus 649 a~~~~~~ 655 (967)
+.+....
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9776543
No 72
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3.7e-13 Score=124.93 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec---CCCCCCEEEEeecCcchHHHHHHHh-CCCccCCeEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN---EDHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAV 647 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d---~~~skG~aFVeF~~~e~A~~Al~~L-nG~~~~Gr~I~V~ 647 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+ .+.++|||||+|.+.++|.+|+..| ||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 45689999999999999999999999999999999887 4556999999999999999999999 9999999999999
Q ss_pred EcccCCC
Q 002093 648 QAVLDGS 654 (967)
Q Consensus 648 ~a~~~~~ 654 (967)
++.+...
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9977544
No 73
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=124.45 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999988753 46899999999999999999999999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 76543
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=121.44 Aligned_cols=80 Identities=26% Similarity=0.510 Sum_probs=74.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC---CCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH---EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~---skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.+++|||+|||..+++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3679999999999999999999999999999999888642 6899999999999999999999999999999999999
Q ss_pred ccC
Q 002093 650 VLD 652 (967)
Q Consensus 650 ~~~ 652 (967)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 75
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=126.97 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=72.4
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhC--CCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN--GLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~Ln--G~~~~Gr~I~V~~ 648 (967)
+....+|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..|+..|+ |..|.|++|.|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 445789999999999999999999999999999999875 8999999999999999999886 4789999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 976543
No 76
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.44 E-value=1.6e-13 Score=122.34 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=69.3
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..-|||+||+..+|+++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.|||..+.|++|.|..|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999999999999999865 69999999999999999999999999999999999883
No 77
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=126.79 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCc----e
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC----S 534 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~----~ 534 (967)
.....||||+|||+.+|+++|+++|++||.+. +..| ..+.+..++.++|||||+|.+.++|..||+ |||. .
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~-v~~v---~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLA-VNNI---RLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCC-GGGE---ECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCcc-EEEE---EEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 35567999999999999999999999999421 1122 244667789999999999999999999999 9996 5
Q ss_pred eecceeEEeCC
Q 002093 535 FSGSILKIKRP 545 (967)
Q Consensus 535 l~Gr~l~V~rp 545 (967)
+.|++|.|.++
T Consensus 82 i~Gr~i~V~~A 92 (95)
T 2lkz_A 82 IDGKTIGVDFA 92 (95)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEEEEc
Confidence 89999999854
No 78
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.9e-13 Score=121.99 Aligned_cols=83 Identities=16% Similarity=0.347 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 357899999999999999999999999999999999875 456899999999999999999999999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 79
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.43 E-value=3.3e-13 Score=123.02 Aligned_cols=81 Identities=19% Similarity=0.394 Sum_probs=74.9
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5789999999999999999999999999999998875 44699999999999999999999999999999999999976
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 543
No 80
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=125.09 Aligned_cols=84 Identities=12% Similarity=0.226 Sum_probs=77.2
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....++|||+|||..+++++|+++|++||.|..|.|+.+.+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 34578999999999999999999999999999999998855679999999999999999999999999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7544
No 81
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.3e-13 Score=122.70 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=75.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEE-EEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAY-HFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v-~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
+.++|||+|||..+++++|+++|++||.|..| .|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 998874 446999999999999999999999999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76554
No 82
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.43 E-value=5.7e-14 Score=126.65 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=68.5
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcC--CeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFG--PLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G--~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
.+|||+|||..+++++|+++|++|| .|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999884 4568999999999999999999999999999999999987
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 83
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.2e-13 Score=123.54 Aligned_cols=84 Identities=17% Similarity=0.314 Sum_probs=76.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
.....+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999998874 34689999999999999999999999999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976544
No 84
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.9e-13 Score=123.35 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456899999999999999999999999999999999886 3457999999999999999999999999999999999997
Q ss_pred cCC
Q 002093 651 LDG 653 (967)
Q Consensus 651 ~~~ 653 (967)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 85
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.5e-13 Score=124.07 Aligned_cols=84 Identities=15% Similarity=0.285 Sum_probs=76.5
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
....++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3457899999999999999999999999999999998874 34699999999999999999999999999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 977554
No 86
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.2e-13 Score=123.59 Aligned_cols=84 Identities=17% Similarity=0.377 Sum_probs=76.8
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
.....+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3457899999999999999999999999999999998874 44689999999999999999999999999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 977554
No 87
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=129.21 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=68.9
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|++ |||..|.|+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v------~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEV------EILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEE------EEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 456799999999999999999999999964433 133566678999999999999999999999 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|...
T Consensus 78 i~V~~a 83 (110)
T 3s8s_A 78 IHAQLD 83 (110)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 999853
No 88
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5.5e-13 Score=122.11 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999998875 4469999999999999999998 9999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 76543
No 89
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.4e-13 Score=124.48 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=76.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
....++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3457899999999999999999999999999999999874 34689999999999999999999999999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 977544
No 90
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.7e-13 Score=121.35 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=74.0
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
+...++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999998754 4589999999999999999999999999999999998
Q ss_pred ccc
Q 002093 649 AVL 651 (967)
Q Consensus 649 a~~ 651 (967)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 853
No 91
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.41 E-value=7.3e-13 Score=125.44 Aligned_cols=83 Identities=25% Similarity=0.430 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456899999999999999999999999999999999885 4468999999999999999999999999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 92
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.7e-13 Score=121.19 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=73.3
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
+...++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44578999999999999999999999999999999988753 4689999999999999999999999999999999998
Q ss_pred c
Q 002093 649 A 649 (967)
Q Consensus 649 a 649 (967)
|
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 7
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.41 E-value=2e-13 Score=125.71 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=73.2
Q ss_pred CceEEEcCCCc------ccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCC-eEE
Q 002093 574 PHKIFIGGISR------TLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGG-QVL 644 (967)
Q Consensus 574 ~~~L~V~nLp~------~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~G-r~I 644 (967)
.++|||+|||. .+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 999999999999999999999998864 469999999999999999999999999999 999
Q ss_pred EEEEccc
Q 002093 645 TAVQAVL 651 (967)
Q Consensus 645 ~V~~a~~ 651 (967)
.|.++.+
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9999865
No 94
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.3e-13 Score=124.56 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=64.7
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-cc--Cceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD--GCSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-ln--g~~l~ 536 (967)
..+.++|||+|||+.+|+++|+++|++||. |.++.+...+|||||+|.+.++|..|++ |+ +..|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 456789999999999999999999999994 4455555569999999999999999999 76 47899
Q ss_pred cceeEEeCCC
Q 002093 537 GSILKIKRPK 546 (967)
Q Consensus 537 Gr~l~V~rp~ 546 (967)
|++|.|.+.+
T Consensus 81 Gr~l~V~~A~ 90 (105)
T 1sjq_A 81 GQPIYIQFSN 90 (105)
T ss_dssp TEECCBCCCS
T ss_pred CEEEEEEEcC
Confidence 9999998643
No 95
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.41 E-value=6.1e-13 Score=119.09 Aligned_cols=78 Identities=13% Similarity=0.291 Sum_probs=72.4
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4789999999999999999999999999999999874 456999999999999999999 8999999999999999865
Q ss_pred C
Q 002093 652 D 652 (967)
Q Consensus 652 ~ 652 (967)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 96
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.41 E-value=7.9e-13 Score=124.58 Aligned_cols=83 Identities=14% Similarity=0.318 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 345899999999999999999999999999999999885 345899999999999999999999999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 76544
No 97
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=124.44 Aligned_cols=98 Identities=23% Similarity=0.270 Sum_probs=73.1
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecC-CCcEEEEEEcCHHHHHHHHH-ccCceeecceeE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR-EKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~-skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~ 541 (967)
++|||+|||+++|+++|+++|+.||.+.. +.+.. ++|||||+|.+.++|..|+. |||..|.|+.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~------------v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRT------------VWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSE------------EEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEE------------EEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 48999999999999999999999995332 22222 69999999999999999999 999999999999
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCC
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGIS 583 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp 583 (967)
|.+......... .+ ..........+|||+||+
T Consensus 69 V~~a~~~~~~~~---------~~-~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 69 VELSTGMPRRSR---------FD-RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp EEESSSCCCSSC---------CC-SCCCSCCCCSCCCSCCCC
T ss_pred EEEccCCCCccc---------CC-CCCccccCCCceecCCCC
Confidence 986543221100 00 001112336789999996
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.9e-13 Score=123.99 Aligned_cols=81 Identities=19% Similarity=0.371 Sum_probs=74.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 457899999999999999999999999999999998854 458999999999999999999999999999999999997
Q ss_pred cCC
Q 002093 651 LDG 653 (967)
Q Consensus 651 ~~~ 653 (967)
+..
T Consensus 102 ~~~ 104 (106)
T 1p27_B 102 VRG 104 (106)
T ss_dssp ESS
T ss_pred CCC
Confidence 654
No 99
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.8e-13 Score=122.74 Aligned_cols=83 Identities=17% Similarity=0.362 Sum_probs=74.9
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....++|||+|||..+++++|+++|++||.|..|.|..+ ..++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 345689999999999999999999999999999998665 3469999999999999999999999999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 100
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=6e-13 Score=123.72 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=73.8
Q ss_pred CeEEEccccC-CCCCCCC--------CCh----HHHHHHHHHHHHHH-hcCCCeEEEEEecCCCCCcceeEEEEeCCHHH
Q 002093 679 TEVLKLKNVF-NPEGFSS--------LSE----LEVEEVLEDVRLEC-ARFGSVKSVNVVKYGDSNISTIQACEGNENTA 744 (967)
Q Consensus 679 s~vl~L~Nl~-~~~~L~~--------i~~----~~~eei~eDIr~~f-~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~ 744 (967)
+++|+|.||+ +|..... +++ +.|.++.+||+++| ++||.|+.|.|+++..+.++|||||+|.+.++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 4789999999 4544310 011 34667889999999 99999999999998888899999999999999
Q ss_pred HHHHHHHhCCCccCCCcceeEEe
Q 002093 745 SAGVGQNLTNDETNEKGERLEEV 767 (967)
Q Consensus 745 A~~Ai~~LnG~~~~~r~~~v~~~ 767 (967)
|.+|+..|||+.|+|+.+.+..+
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHCCCEECCEEEEEEEc
Confidence 99999999999999999987653
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.40 E-value=5.3e-13 Score=123.96 Aligned_cols=79 Identities=14% Similarity=0.248 Sum_probs=73.0
Q ss_pred CCceEEEcCCCccc------CHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCe-EEE
Q 002093 573 SPHKIFIGGISRTL------SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ-VLT 645 (967)
Q Consensus 573 ~~~~L~V~nLp~~~------teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr-~I~ 645 (967)
..++|||+|||..+ ++++|+++|++||.|..|.|++..+.++|||||+|.+.++|.+|+..|||..|.|+ .|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 35799999999999 78999999999999999999866667899999999999999999999999999999 999
Q ss_pred EEEccc
Q 002093 646 AVQAVL 651 (967)
Q Consensus 646 V~~a~~ 651 (967)
|.++..
T Consensus 94 V~~a~~ 99 (105)
T 2nlw_A 94 VNLFTD 99 (105)
T ss_dssp EECSCC
T ss_pred EEEcch
Confidence 999854
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.40 E-value=6e-13 Score=121.94 Aligned_cols=79 Identities=16% Similarity=0.281 Sum_probs=73.1
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeE--------EEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccC
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKA--------YHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVG 640 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~--------v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~ 640 (967)
+...++|||+|||..+++++|+++|++||.|.. |.|+.+.. .++|||||+|.+.++|.+|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 445789999999999999999999999999999 99988753 45899999999999999999999999999
Q ss_pred CeEEEEEEc
Q 002093 641 GQVLTAVQA 649 (967)
Q Consensus 641 Gr~I~V~~a 649 (967)
|+.|.|.+|
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999987
No 103
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.40 E-value=3.6e-13 Score=127.45 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+++|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAK------VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEE------ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45678999999999999999999999999644332 22344568889999999999999999999 999999999
Q ss_pred eeEEeC
Q 002093 539 ILKIKR 544 (967)
Q Consensus 539 ~l~V~r 544 (967)
.|+|.+
T Consensus 111 ~l~V~~ 116 (118)
T 2khc_A 111 RLKVQL 116 (118)
T ss_dssp ECCEEE
T ss_pred EEEEEe
Confidence 999974
No 104
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.40 E-value=1.3e-13 Score=124.33 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=64.0
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhh--hhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFL--LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG--~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
.+|||+|||+++|+++|+++|+.|| .+..+. .+.+..++.++|||||+|.+.++|.+|++ |||..|.|+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~------i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK------FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEE------EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEE------EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999999999999999999 544331 33455688999999999999999999998 99999999999
Q ss_pred EEeCCC
Q 002093 541 KIKRPK 546 (967)
Q Consensus 541 ~V~rp~ 546 (967)
+|....
T Consensus 76 ~V~~~~ 81 (90)
T 3p5t_L 76 VVTPSN 81 (90)
T ss_dssp EECCC-
T ss_pred EEEECC
Confidence 998543
No 105
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.40 E-value=8.2e-13 Score=122.23 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCC---eEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG---QVLTAV 647 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~G---r~I~V~ 647 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 357899999999999999999999999999999999885 3458999999999999999999999999988 999999
Q ss_pred EcccCCC
Q 002093 648 QAVLDGS 654 (967)
Q Consensus 648 ~a~~~~~ 654 (967)
++.+...
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9976543
No 106
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.5e-13 Score=123.19 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=72.5
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
++|||+|||..+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999887 799999999999999999999999999999999999977553
No 107
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=7e-13 Score=121.88 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=70.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+++|+++|+++|..||.+.. ..+.+..++.++|||||+|.+.++|.+||+|||..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-------~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-------LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-------CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-------EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 45679999999999999999999999997544 14577788999999999999999999999999999999999
Q ss_pred EEeCCC
Q 002093 541 KIKRPK 546 (967)
Q Consensus 541 ~V~rp~ 546 (967)
.|.++.
T Consensus 88 ~V~~a~ 93 (101)
T 1fj7_A 88 KLEKPK 93 (101)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 998643
No 108
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-13 Score=122.27 Aligned_cols=82 Identities=15% Similarity=0.282 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCee-EEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeE----E
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLK-AYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV----L 644 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~-~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~----I 644 (967)
....+|||+|||..+++++|+++|++||.|. .|.|+.+.. .++|||||+|.+.++|.+|++.|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 999998853 45899999999999999999999999999999 9
Q ss_pred EEEEcccCC
Q 002093 645 TAVQAVLDG 653 (967)
Q Consensus 645 ~V~~a~~~~ 653 (967)
.|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997654
No 109
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.40 E-value=7.8e-13 Score=128.86 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=69.5
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
.....++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+|+. |||..|.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVK------IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEE------EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345678999999999999999999999999643321 23444567889999999999999999999 99999999
Q ss_pred ceeEEeCCC
Q 002093 538 SILKIKRPK 546 (967)
Q Consensus 538 r~l~V~rp~ 546 (967)
+.|+|.+..
T Consensus 112 ~~l~v~~a~ 120 (139)
T 1u6f_A 112 KRLKVALAA 120 (139)
T ss_dssp CEEEEEESS
T ss_pred eEEEEEECC
Confidence 999998644
No 110
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=9.7e-13 Score=122.89 Aligned_cols=83 Identities=28% Similarity=0.446 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhC------CCccCCeE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLN------GLKVGGQV 643 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~Ln------G~~~~Gr~ 643 (967)
....+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 4568999999999999999999999999999999998854 469999999999999999999999 99999999
Q ss_pred EEEEEcccCCC
Q 002093 644 LTAVQAVLDGS 654 (967)
Q Consensus 644 I~V~~a~~~~~ 654 (967)
|.|.++.+...
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999976543
No 111
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.40 E-value=6.6e-13 Score=122.17 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCc--cCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLK--VGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~--~~Gr~I~V~~a 649 (967)
.+..+|||+|||..+|+++|+++|++||.|..|.+++ ++|||||+|.+.++|.+|+..|+|.. |.|++|.|.++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 3568999999999999999999999999999999875 48999999999999999999999875 78999999998
Q ss_pred ccC
Q 002093 650 VLD 652 (967)
Q Consensus 650 ~~~ 652 (967)
...
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 653
No 112
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.40 E-value=3.9e-13 Score=119.28 Aligned_cols=78 Identities=27% Similarity=0.324 Sum_probs=67.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEE------EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4578999999999999999999999999643321 23455678889999999999999999998 9999999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|+|.+
T Consensus 79 l~v~~ 83 (85)
T 3mdf_A 79 IRVNL 83 (85)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99984
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.39 E-value=8e-13 Score=123.44 Aligned_cols=81 Identities=21% Similarity=0.400 Sum_probs=74.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 45789999999999999999999999999999998874 3468999999999999999999999999999999999997
Q ss_pred cCC
Q 002093 651 LDG 653 (967)
Q Consensus 651 ~~~ 653 (967)
+..
T Consensus 105 ~~~ 107 (110)
T 1oo0_B 105 VKG 107 (110)
T ss_dssp ESS
T ss_pred cCC
Confidence 654
No 114
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.4e-13 Score=127.74 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|++||.+..+. .+.+.. +.++|||||+|.+.++|..||.+||..|.|+.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~------i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ------MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEE------EECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEE------EEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence 3457999999999999999999999999644432 223333 889999999999999999999999999999999
Q ss_pred EEeCCCccc
Q 002093 541 KIKRPKEFV 549 (967)
Q Consensus 541 ~V~rp~~~~ 549 (967)
.|.+..+|.
T Consensus 82 ~V~~~~~~~ 90 (103)
T 1s79_A 82 LILFKDDYF 90 (103)
T ss_dssp EEEEHHHHH
T ss_pred EEEEchHHH
Confidence 999766654
No 115
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.39 E-value=5.8e-13 Score=120.81 Aligned_cols=79 Identities=18% Similarity=0.379 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 3468999999999999999999999999999999998753 458999999999999999999999999999999999874
No 116
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.39 E-value=7.8e-13 Score=123.65 Aligned_cols=82 Identities=18% Similarity=0.453 Sum_probs=74.9
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
....++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999998854 3589999999999999999999999999999999999
Q ss_pred cccC
Q 002093 649 AVLD 652 (967)
Q Consensus 649 a~~~ 652 (967)
+.+.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8653
No 117
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=3.8e-13 Score=126.28 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCcccCHHHHH---HHHHhcCCeeEEEEeecCC-----CCCCEEEEeecCcchHHHHHHHhCCCccCCeE
Q 002093 572 DSPHKIFIGGISRTLSSKMVM---EIVCAFGPLKAYHFEVNED-----HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV 643 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~---e~Fsk~G~V~~v~l~~d~~-----~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~ 643 (967)
...++|||+|||..+++++|+ ++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 9999999999999988864 34699999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 002093 644 LTAVQAVLDG 653 (967)
Q Consensus 644 I~V~~a~~~~ 653 (967)
|.|.+|.+..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997654
No 118
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.9e-13 Score=120.58 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. ..+.+..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~-----~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTP-----KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCC-----EECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-----EEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3567999999999999999999999999644430 122344678899999999999999999999 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 78 l~v~~a 83 (96)
T 1x5t_A 78 ITVSYA 83 (96)
T ss_dssp CEEEES
T ss_pred EEEEEe
Confidence 999854
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.38 E-value=6.8e-13 Score=122.07 Aligned_cols=73 Identities=22% Similarity=0.167 Sum_probs=64.0
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCce--ee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS--FS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~--l~ 536 (967)
..++++|||+|||+.+|+++|+++|++||. |.++.+.+++|||||+|.+.++|..|+. ||+.. |.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGP------------ISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 356789999999999999999999999994 4455555689999999999999999999 99865 78
Q ss_pred cceeEEeC
Q 002093 537 GSILKIKR 544 (967)
Q Consensus 537 Gr~l~V~r 544 (967)
|++|.|..
T Consensus 86 Gr~i~V~~ 93 (100)
T 3r27_A 86 GHPAFVNY 93 (100)
T ss_dssp TEEEEEEE
T ss_pred CcEEEEEe
Confidence 99999984
No 120
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=4.3e-13 Score=124.18 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCc-ccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCC--ccCCeEEEEEE
Q 002093 572 DSPHKIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGL--KVGGQVLTAVQ 648 (967)
Q Consensus 572 ~~~~~L~V~nLp~-~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~--~~~Gr~I~V~~ 648 (967)
.+..+|||+|||. .+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..|+..|||. .|.|++|.|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3568999999999 9999999999999999999999875 799999999999999999999864 59999999999
Q ss_pred cccCC
Q 002093 649 AVLDG 653 (967)
Q Consensus 649 a~~~~ 653 (967)
|....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 97543
No 121
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.4e-13 Score=120.93 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=67.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+|+. |||..|.|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS------IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEE------EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEE------EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4567999999999999999999999999643321 23444567889999999999999999999 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|+|.++
T Consensus 87 l~v~~a 92 (95)
T 2cqc_A 87 IRVSGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999864
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=8.3e-13 Score=117.23 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=65.0
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-c-cCceeec
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-C-DGCSFSG 537 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-l-ng~~l~G 537 (967)
....++|||+|||..+|+++|+++|+.||. |..+.+..++|||||+|.+.++|..|+. | ||..|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~------------i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGE------------IRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCC------------EeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 456789999999999999999999999993 4555555679999999999999999999 8 9999999
Q ss_pred ceeEEeC
Q 002093 538 SILKIKR 544 (967)
Q Consensus 538 r~l~V~r 544 (967)
++|+|.+
T Consensus 77 ~~l~v~~ 83 (85)
T 2ytc_A 77 RRLNVKW 83 (85)
T ss_dssp EECCEEE
T ss_pred CEEEEEe
Confidence 9999985
No 123
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-12 Score=117.25 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|||..+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 457899999999999999999999999999999986 78999999999999999999999999999999999976
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 124
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.7e-13 Score=122.20 Aligned_cols=83 Identities=14% Similarity=0.341 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHh-cCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCc-cCCeEEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCA-FGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLK-VGGQVLTAVQ 648 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk-~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~-~~Gr~I~V~~ 648 (967)
....+|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||.. |+|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 35689999999999999999999999 9999999999885 3458999999999999999999999999 9999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 976544
No 125
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.38 E-value=8.4e-13 Score=122.59 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=73.5
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.....+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3457899999999999999999999999999999999885 345899999999999999999999999999999999987
Q ss_pred c
Q 002093 650 V 650 (967)
Q Consensus 650 ~ 650 (967)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.9e-13 Score=122.68 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC---CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE---DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~---~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
....+|||+|||..+++++|+++|+.|| |..|.|+.+. +.++|||||+|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 9999998885 446999999999999999999 8999999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 976543
No 127
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.38 E-value=7.3e-13 Score=124.83 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=68.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK------VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEE------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4567999999999999999999999999644331 23444578899999999999999999998 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|+|.+..
T Consensus 97 l~V~~a~ 103 (115)
T 2cpz_A 97 LKVQLKR 103 (115)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998644
No 128
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=9e-13 Score=125.31 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhC--CCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN--GLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~Ln--G~~~~Gr~I~V~~a 649 (967)
.+..+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|+ |..|.|++|.|.++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 35689999999999999999999999999999999876 8999999999999999999887 47899999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 105 ~~k~~ 109 (119)
T 2ad9_A 105 NHKEL 109 (119)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 76543
No 129
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.38 E-value=1.1e-12 Score=121.52 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=75.9
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCcc---CCeEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKV---GGQVLT 645 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~---~Gr~I~ 645 (967)
.....+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456899999999999999999999999999999998875 44689999999999999999999999887 899999
Q ss_pred EEEcccCCC
Q 002093 646 AVQAVLDGS 654 (967)
Q Consensus 646 V~~a~~~~~ 654 (967)
|.++.+...
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999976543
No 130
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.38 E-value=4.6e-13 Score=122.76 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=67.0
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcc--cccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQ--HVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~--~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
.+.++|||+|||..+|+++|+++|+.||.+.... ..+....+.+..++.++|||||+|.+.++|..|+. |||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4567999999999999999999999999643300 00001123444568889999999999999999999 99999999
Q ss_pred ceeEEeC
Q 002093 538 SILKIKR 544 (967)
Q Consensus 538 r~l~V~r 544 (967)
+.|+|.+
T Consensus 91 ~~l~V~~ 97 (99)
T 2la6_A 91 NPIKVSF 97 (99)
T ss_dssp SBCEEEE
T ss_pred cEEEEEe
Confidence 9999984
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=119.59 Aligned_cols=72 Identities=15% Similarity=0.330 Sum_probs=67.1
Q ss_pred ceEEEcCCCccc------CHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCe-EEEE
Q 002093 575 HKIFIGGISRTL------SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ-VLTA 646 (967)
Q Consensus 575 ~~L~V~nLp~~~------teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr-~I~V 646 (967)
++|||+|||..+ ++++|+++|++||.|..|.|+...+.++|||||+|.+.++|.+|+..|||..|+|+ +|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 78999999999999999999866667899999999999999999999999999999 8876
No 132
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.38 E-value=2.1e-12 Score=123.44 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=76.4
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3456899999999999999999999999999999998875 346899999999999999999999999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 76543
No 133
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.38 E-value=6.4e-13 Score=121.05 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=67.8
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
+.++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLK------MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 357999999999999999999999999643321 22444568889999999999999999998 99999999999
Q ss_pred EEeCCCc
Q 002093 541 KIKRPKE 547 (967)
Q Consensus 541 ~V~rp~~ 547 (967)
.|.+...
T Consensus 75 ~V~~a~~ 81 (96)
T 2x1f_A 75 KCGYSSN 81 (96)
T ss_dssp EEEECSC
T ss_pred EEEEcCC
Confidence 9986443
No 134
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.38 E-value=7.6e-13 Score=126.71 Aligned_cols=82 Identities=18% Similarity=0.370 Sum_probs=75.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 46799999999999999999999999999999998884 4469999999999999999999999999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 101 ~~~~ 104 (126)
T 3ex7_B 101 VRGP 104 (126)
T ss_dssp ESSS
T ss_pred CCCC
Confidence 7554
No 135
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=121.54 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC-CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~-~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 3468999999999999999999999999999999988753 358999999999999999999999999999999999986
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5443
No 136
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.9e-13 Score=122.32 Aligned_cols=80 Identities=24% Similarity=0.248 Sum_probs=68.7
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTH------MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 35578999999999999999999999999644332 23445578899999999999999999999 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
+|.|.+.
T Consensus 86 ~l~v~~a 92 (105)
T 1x5u_A 86 PIRVNKA 92 (105)
T ss_dssp BCEEEET
T ss_pred EEEEEEC
Confidence 9999853
No 137
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=134.03 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=67.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhh--hhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFL--LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG--~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
...++|||+|||+++|+++|+++|+.|| .+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v------~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVEL------KFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEE------EEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEE------EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568999999999999999999999999 53332 133556689999999999999999999999 99999999
Q ss_pred ceeEEeCC
Q 002093 538 SILKIKRP 545 (967)
Q Consensus 538 r~l~V~rp 545 (967)
+.|.|..+
T Consensus 127 r~l~V~~a 134 (156)
T 3n9u_C 127 EKVDVRPA 134 (156)
T ss_dssp EECEEEEC
T ss_pred eEeEEEEc
Confidence 99999854
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=4.9e-13 Score=122.94 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=65.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||.++|+++|+++|+.||. |.++.+..++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~------------i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGF------------ILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 44689999999999999999999999994 3455555789999999999999999998 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|+|.++
T Consensus 93 l~V~~a 98 (101)
T 2la4_A 93 LRTGWG 98 (101)
T ss_dssp CCCCBC
T ss_pred EEEEec
Confidence 999854
No 139
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.5e-12 Score=121.49 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 35689999999999999999999999999999999876 89999999999999999999999999999999999977
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 140
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.3e-12 Score=121.87 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCC-----eEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG-----QVLTA 646 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~G-----r~I~V 646 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|||..|.| +.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 34689999999999999999999999999999999876 999999999999999999999999999 99999
Q ss_pred EEcccCCC
Q 002093 647 VQAVLDGS 654 (967)
Q Consensus 647 ~~a~~~~~ 654 (967)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99977543
No 141
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.37 E-value=1.4e-12 Score=116.35 Aligned_cols=77 Identities=21% Similarity=0.406 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|++ ++|..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999998853 458999999999999999996 6888999999999875
No 142
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.37 E-value=4.7e-13 Score=116.01 Aligned_cols=74 Identities=12% Similarity=0.219 Sum_probs=64.6
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEEeC
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKR 544 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V~r 544 (967)
+|||+|||+++|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+|++|||..|.|++|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAM------LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEEC------CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 599999999999999999999999644332 23445578899999999999999999999999999999999984
No 143
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.1e-12 Score=123.19 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=70.4
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcc--cccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQ--HVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~--~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
....++|||+|||+.+|+++|+++|..||.+.... ..+....+.+..++.++|||||+|.+.++|..||. |||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999644100 00011133455678899999999999999999999 9999999
Q ss_pred cceeEEeCCCc
Q 002093 537 GSILKIKRPKE 547 (967)
Q Consensus 537 Gr~l~V~rp~~ 547 (967)
|+.|+|.++..
T Consensus 92 g~~l~V~~a~~ 102 (113)
T 2cpe_A 92 GSKLKVSLARK 102 (113)
T ss_dssp TEECEEECSSC
T ss_pred CCEEEEEECCC
Confidence 99999996543
No 144
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.37 E-value=4.3e-13 Score=119.76 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=67.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
..+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+|+.+++..|.|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT------IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEE------EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 45678999999999999999999999999644331 234445688899999999999999999999899999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|.|.+
T Consensus 82 i~v~~ 86 (87)
T 3s7r_A 82 IDPKK 86 (87)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99974
No 145
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.2e-13 Score=120.21 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=68.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIV------LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3567999999999999999999999999644321 22444568889999999999999999999 9999999999
Q ss_pred eEEeCCCc
Q 002093 540 LKIKRPKE 547 (967)
Q Consensus 540 l~V~rp~~ 547 (967)
|+|.+...
T Consensus 77 l~V~~a~~ 84 (95)
T 2dnz_A 77 MRVGHVTE 84 (95)
T ss_dssp CEEEESSC
T ss_pred EEEEEccc
Confidence 99986443
No 146
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.3e-12 Score=119.31 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=72.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccC--CeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG--GQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~--Gr~I~V~~ 648 (967)
..+.++|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.|||..|. |+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 345689999999999999999999999999999998754 899999999999999999999999999 99999999
Q ss_pred cccCC
Q 002093 649 AVLDG 653 (967)
Q Consensus 649 a~~~~ 653 (967)
+.+..
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97654
No 147
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=7.9e-13 Score=120.75 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeee---ecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCV---IQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~---~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+.. ++.++|||||+|.+.++|..||. |||..|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCT------ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 4568999999999999999999999999643321 223333 45789999999999999999999 9999999
Q ss_pred cceeEEeCCCc
Q 002093 537 GSILKIKRPKE 547 (967)
Q Consensus 537 Gr~l~V~rp~~ 547 (967)
|+.|.|.+...
T Consensus 77 g~~l~V~~a~~ 87 (98)
T 2cpf_A 77 GHKLEVRISER 87 (98)
T ss_dssp TEECEEECSSC
T ss_pred CeEEEEEEccC
Confidence 99999996543
No 148
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.9e-13 Score=123.53 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=72.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...+|||+|||..+|+++|+++|++||.|.+|.|+.+. +.++|||||+|.+.++|.+|+. ++|..|+|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 35789999999999999999999999999999999875 4569999999999999999998 999999999999998754
No 149
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=9e-13 Score=120.60 Aligned_cols=80 Identities=30% Similarity=0.423 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELH------YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4678999999999999999999999999643321 22344578889999999999999999997 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 80 l~V~~a~ 86 (99)
T 1whw_A 80 LHVLPST 86 (99)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9998643
No 150
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.37 E-value=4.3e-13 Score=123.51 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCC------cchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCce
Q 002093 462 PMRRLCVENLPL------SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS 534 (967)
Q Consensus 462 ~~r~LyVgNLp~------~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~ 534 (967)
..++|||+|||+ .+++++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|.+|+. |||..
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v------~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNM------EFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEE------ECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEE------EEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 357999999999 99999999999999964432 234566778999999999999999999998 99999
Q ss_pred eec-ceeEEeCC
Q 002093 535 FSG-SILKIKRP 545 (967)
Q Consensus 535 l~G-r~l~V~rp 545 (967)
|.| ++|.|.++
T Consensus 79 ~~g~r~l~V~~a 90 (100)
T 3ns6_A 79 LDLKHRLFLYTM 90 (100)
T ss_dssp SSSSCBCEEEES
T ss_pred cCCCeEEEEEEC
Confidence 999 99999854
No 151
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.37 E-value=1.2e-12 Score=121.34 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=68.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee---
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF--- 535 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l--- 535 (967)
....++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT------VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEE------CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 45678999999999999999999999999644432 23455678899999999999999999999 999887
Q ss_pred ecceeEEeCCC
Q 002093 536 SGSILKIKRPK 546 (967)
Q Consensus 536 ~Gr~l~V~rp~ 546 (967)
.|++|.|.++.
T Consensus 84 ~g~~l~v~~a~ 94 (106)
T 2dgp_A 84 MNRPIQVKPAD 94 (106)
T ss_dssp CSSCCEEEECC
T ss_pred CCceEEEEECC
Confidence 89999998543
No 152
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.5e-13 Score=121.47 Aligned_cols=81 Identities=27% Similarity=0.325 Sum_probs=69.5
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEE------CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35678999999999999999999999999644432 23455678899999999999999999998 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|.|.+..
T Consensus 83 ~l~V~~a~ 90 (102)
T 2cqb_A 83 TIRVNLAK 90 (102)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998543
No 153
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=119.51 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
....+|||+|||..+++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|++.|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 35689999999999999999999999999999999764 89999999999999999999999999999999999976
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 154
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=8.3e-13 Score=120.60 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=68.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|.+|+. |||..|.|+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTT------CEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccce------EEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 446799999999999999999999999964432 234566778899999999999999999998 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|+|.+.
T Consensus 87 l~V~~a 92 (98)
T 2cqp_A 87 VKLVLG 92 (98)
T ss_dssp CEEEES
T ss_pred EEEEEc
Confidence 999853
No 155
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=122.38 Aligned_cols=81 Identities=27% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-cc------C
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD------G 532 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-ln------g 532 (967)
..+.++|||+|||+.+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||. || |
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR------VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 45678999999999999999999999999643321 33455678899999999999999999999 99 9
Q ss_pred ceeecceeEEeCCC
Q 002093 533 CSFSGSILKIKRPK 546 (967)
Q Consensus 533 ~~l~Gr~l~V~rp~ 546 (967)
..|.|+.|.|.+..
T Consensus 86 ~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 86 LKLDGRQLKVDLAV 99 (111)
T ss_dssp EESSSCEEEEECCC
T ss_pred cEEcCEEEEEEECC
Confidence 99999999998643
No 156
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.9e-13 Score=120.10 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=66.7
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVT------IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEE------ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 4567999999999999999999999999643321 22344567889999999999999999998 9999999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|+|.+
T Consensus 88 l~v~~ 92 (94)
T 2e5h_A 88 IKASI 92 (94)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99984
No 157
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.36 E-value=1.2e-12 Score=123.14 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||..+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR------VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45678999999999999999999999999643321 22344578889999999999999999999 999999999
Q ss_pred eeEEeCCCc
Q 002093 539 ILKIKRPKE 547 (967)
Q Consensus 539 ~l~V~rp~~ 547 (967)
.|.|.+...
T Consensus 86 ~l~V~~a~~ 94 (115)
T 2dgo_A 86 QIRTNWATR 94 (115)
T ss_dssp ECEEEESSC
T ss_pred EEEEEEccC
Confidence 999996544
No 158
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=123.32 Aligned_cols=79 Identities=15% Similarity=0.331 Sum_probs=73.1
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+|||..+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|| .|||..|+|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 47999999999999999999999999999999998764 46899999999999999999 8999999999999999866
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 159
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=1.5e-12 Score=120.10 Aligned_cols=82 Identities=12% Similarity=0.210 Sum_probs=74.1
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
....++|||+|||..+++++|+++|++|| |..|.|+.+.. .++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 99999998854 45899999999999999999 8999999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 976543
No 160
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.36 E-value=9.2e-13 Score=131.53 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=72.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcC--CeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFG--PLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G--~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
...+|||+|||..+++++|+++|+.|| .|..|.|+.|. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 89999999884 44689999999999999999999999999999999999
Q ss_pred ccc
Q 002093 649 AVL 651 (967)
Q Consensus 649 a~~ 651 (967)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 865
No 161
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.6e-12 Score=121.92 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCee--------EEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCC
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLK--------AYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG 641 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~--------~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~G 641 (967)
...++|||+|||..+++++|+++|++||.|. .|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3568999999999999999999999999998 68888874 3468999999999999999999999999999
Q ss_pred eEEEEEEcccCCC
Q 002093 642 QVLTAVQAVLDGS 654 (967)
Q Consensus 642 r~I~V~~a~~~~~ 654 (967)
+.|.|.++.+...
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999976544
No 162
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.36 E-value=7.5e-13 Score=127.89 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=75.9
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
+.+..+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999998753 5699999999999999999999999999999999999
Q ss_pred cccCC
Q 002093 649 AVLDG 653 (967)
Q Consensus 649 a~~~~ 653 (967)
+.+..
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 86643
No 163
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.4e-12 Score=118.74 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=66.2
Q ss_pred CCCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 459 ~~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
.....++|||+|||+.+|+++|+++|+.||.+..+..+ .+ ...++|||||+|.+.++|..|+. |||..|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~------~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI------TE--HTSNDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEE------CC--CCSSCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEE------ec--CCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 34567899999999999999999999999964332111 11 23468999999999999999999 99999999
Q ss_pred ceeEEeCCC
Q 002093 538 SILKIKRPK 546 (967)
Q Consensus 538 r~l~V~rp~ 546 (967)
++|+|.+..
T Consensus 83 ~~l~V~~a~ 91 (103)
T 2cqi_A 83 KEVKVNWAT 91 (103)
T ss_dssp EEEEEEECC
T ss_pred CeEEEEECC
Confidence 999998643
No 164
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.36 E-value=9.5e-13 Score=123.81 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=71.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcC-CeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFG-PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G-~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
+....+|||+|||..+++++|+++|++|| .|..+.|... .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34568999999999999999999999999 8999988533 37999999999999999999999999999999999998
Q ss_pred cc
Q 002093 650 VL 651 (967)
Q Consensus 650 ~~ 651 (967)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 165
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=6.2e-13 Score=123.09 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=65.1
Q ss_pred CCCCEEEEeCCCC-cchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccC--ceee
Q 002093 461 RPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG--CSFS 536 (967)
Q Consensus 461 ~~~r~LyVgNLp~-~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng--~~l~ 536 (967)
.+.++|||+|||+ .+|+++|+++|++|| .|.++.+...+|||||+|.+.++|..|+. ||+ ..|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG------------~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFG------------VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGS------------CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcC------------CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 4678999999999 999999999999999 44555666678999999999999999999 886 5699
Q ss_pred cceeEEeCCCc
Q 002093 537 GSILKIKRPKE 547 (967)
Q Consensus 537 Gr~l~V~rp~~ 547 (967)
|++|.|.++..
T Consensus 81 Gr~l~V~~a~~ 91 (102)
T 1x4d_A 81 GKPVRVHLSQK 91 (102)
T ss_dssp TEECEEEEECC
T ss_pred CcEEEEEECCC
Confidence 99999986543
No 166
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8e-13 Score=121.05 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=67.9
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
.+.++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||.||+..|.|+.|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVV------MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEE------ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEE
Confidence 4568999999999999999999999999643321 2234456788999999999999999999999999999999
Q ss_pred EEeCCC
Q 002093 541 KIKRPK 546 (967)
Q Consensus 541 ~V~rp~ 546 (967)
.|.+..
T Consensus 82 ~V~~a~ 87 (99)
T 2dgs_A 82 EVKRAE 87 (99)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998543
No 167
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3e-12 Score=120.83 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|++ .|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 456899999999999999999999999999999998874 45699999999999999999999998 899999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 94 ~~~~~ 98 (116)
T 2cqd_A 94 YLGAK 98 (116)
T ss_dssp TTTCC
T ss_pred ccCCC
Confidence 76543
No 168
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.7e-13 Score=121.08 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=68.1
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVV------VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEE------ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35678999999999999999999999999644332 22344567889999999999999999998 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
+|+|.+.
T Consensus 83 ~l~v~~a 89 (102)
T 1x5s_A 83 QIRVDQA 89 (102)
T ss_dssp CCEEEEE
T ss_pred EEEEEEC
Confidence 9999853
No 169
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.36 E-value=5.4e-13 Score=118.91 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
+.++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDAR------VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 467999999999999999999999999643321 22344577889999999999999999999 99999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
+|.+
T Consensus 79 ~v~~ 82 (87)
T 3bs9_A 79 RTNW 82 (87)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 170
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.36 E-value=5.1e-13 Score=115.78 Aligned_cols=73 Identities=16% Similarity=0.332 Sum_probs=68.0
Q ss_pred eEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 576 KIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 576 ~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
+|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999998875 4568999999999999999997 9999999999999875
No 171
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-12 Score=120.37 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHh--CCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGL--NGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~L--nG~~~~Gr~I~V~~a 649 (967)
.+..+|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..| ++..|.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34689999999999999999999999999999988764 899999999999999999977 468899999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 76443
No 172
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.36 E-value=1.5e-12 Score=123.23 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 346899999999999999999999999999999998874 456999999999999999999999999999999999886
No 173
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.8e-13 Score=121.39 Aligned_cols=81 Identities=22% Similarity=0.431 Sum_probs=74.5
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 57899999999999999999999999999999998853 4589999999999999999999999999999999999976
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 543
No 174
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.36 E-value=7.4e-13 Score=123.80 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=68.2
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ------LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEE------EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45668999999999999999999999999643321 23444567889999999999999999999 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
.|+|.+.
T Consensus 97 ~l~V~~a 103 (108)
T 2jrs_A 97 PMKVGHV 103 (108)
T ss_dssp CCEEECS
T ss_pred EEEEEEc
Confidence 9999854
No 175
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.5e-12 Score=115.19 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=71.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....++|||+|||..+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3456899999999999999999999999999999985 5599999999999999999999999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 81 ~~~~ 84 (92)
T 2dgt_A 81 SRLR 84 (92)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 176
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.1e-12 Score=121.71 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=68.5
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeee-eeecCCCcEEEEEEcCHHHHHHHHH-c-cCceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIG-CVIQREKGQAFVEFLTAEDASAALC-C-DGCSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~-~~~~~skG~aFVeF~~~e~A~~Al~-l-ng~~l~ 536 (967)
....++|||+|||+.+|+++|+++|..||.+..+. .+.+ ..++.++|||||+|.+.++|..||. | ||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVR------LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEE------EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 45678999999999999999999999999644331 2233 4577889999999999999999999 9 999999
Q ss_pred cceeEEeCCC
Q 002093 537 GSILKIKRPK 546 (967)
Q Consensus 537 Gr~l~V~rp~ 546 (967)
|+.|.|.+..
T Consensus 86 g~~l~v~~a~ 95 (107)
T 2cph_A 86 GRRLVLEWAD 95 (107)
T ss_dssp SCBCEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998643
No 177
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=9.3e-13 Score=120.53 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=67.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhc-CcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSS-GVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~-g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
.+.++|||+|||+++|+++|+++|+.||.+. .+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVK------IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEE------EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE------EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 4678999999999999999999999999644 321 23445678889999999999999999999 999999999
Q ss_pred e----eEEeCC
Q 002093 539 I----LKIKRP 545 (967)
Q Consensus 539 ~----l~V~rp 545 (967)
. |+|.++
T Consensus 81 ~~~~~l~v~~a 91 (99)
T 2div_A 81 TPAKRFKLNYA 91 (99)
T ss_dssp SSCEECCEEET
T ss_pred CcceeEEEeec
Confidence 9 888753
No 178
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.5e-12 Score=120.41 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=64.1
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-c--cCceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-C--DGCSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-l--ng~~l~ 536 (967)
..+.++|||+|||+.+|+++|+++|++||. |.++.+...+|||||+|.+.++|..|+. | ++..|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGK------------VTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 356789999999999999999999999994 3444455569999999999999999998 6 468899
Q ss_pred cceeEEeCCC
Q 002093 537 GSILKIKRPK 546 (967)
Q Consensus 537 Gr~l~V~rp~ 546 (967)
|++|.|.+..
T Consensus 80 Gr~l~V~~a~ 89 (101)
T 2cq1_A 80 NQPIYIQYSN 89 (101)
T ss_dssp TEECEEEECS
T ss_pred CcEEEEEEcC
Confidence 9999998543
No 179
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.35 E-value=3.1e-12 Score=124.62 Aligned_cols=84 Identities=18% Similarity=0.347 Sum_probs=76.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
....++|||+|||..+++++|+++|+.||.|..|.|+.+..+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999988643 589999999999999999999999999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 977544
No 180
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=119.88 Aligned_cols=83 Identities=13% Similarity=0.291 Sum_probs=75.2
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
.....+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||.. +|..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44578999999999999999999999999999999998843 4589999999999999999998 99999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876543
No 181
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.7e-13 Score=122.93 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=68.7
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVY------IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4568999999999999999999999999643321 23455568899999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 85 l~V~~a~ 91 (103)
T 2dnm_A 85 LRVQVAR 91 (103)
T ss_dssp CEEEECS
T ss_pred EEEEECC
Confidence 9998644
No 182
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=118.25 Aligned_cols=79 Identities=18% Similarity=0.339 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
....+|||+|||..+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3468999999999999999999999999997 666654 4799999999999999999999999999999999999976
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 183
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=116.62 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
....+|||+|||..+++++|+++|+.| .|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|+|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456899999999999999999999999 99999998873 3458999999999999999999 99999999999999997
Q ss_pred cCC
Q 002093 651 LDG 653 (967)
Q Consensus 651 ~~~ 653 (967)
+..
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 184
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.35 E-value=7.9e-13 Score=119.95 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=67.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
..++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|.+||. |||..|.|++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTC------CEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 45799999999999999999999999964332 234556678899999999999999999999 99999999999
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
+|..+
T Consensus 88 ~v~~a 92 (95)
T 2ek1_A 88 KLSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99853
No 185
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.2e-13 Score=121.09 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTK------AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEE------EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 4568999999999999999999999999644332 22344568889999999999999999999 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|++.++
T Consensus 77 ~~~~~~ 82 (85)
T 1x4e_A 77 AKQSGP 82 (85)
T ss_dssp CCSSCC
T ss_pred EeecCC
Confidence 999864
No 186
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.35 E-value=7.4e-13 Score=116.92 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=65.6
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
.+|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|++|+|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGH------VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEE------EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 5899999999999999999999999644321 22444568889999999999999999999 9999999999999
Q ss_pred eCC
Q 002093 543 KRP 545 (967)
Q Consensus 543 ~rp 545 (967)
.+.
T Consensus 76 ~~a 78 (83)
T 3md1_A 76 NWA 78 (83)
T ss_dssp EEC
T ss_pred Eec
Confidence 853
No 187
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=2.4e-12 Score=119.64 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=69.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCC--CccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNG--LKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG--~~~~Gr~I~V~~a~ 650 (967)
+..+|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..|+| ..|.|++|.|.++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 4689999999999999999999999999999998764 89999999999999999998876 45999999999997
Q ss_pred cCC
Q 002093 651 LDG 653 (967)
Q Consensus 651 ~~~ 653 (967)
+..
T Consensus 90 ~~~ 92 (104)
T 1wex_A 90 SKR 92 (104)
T ss_dssp SSS
T ss_pred Ccc
Confidence 644
No 188
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=114.96 Aligned_cols=74 Identities=20% Similarity=0.403 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHh-CCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~L-nG~~~~Gr~I~V~~a 649 (967)
....+|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..| +|..|+|+.|.|.++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 34689999999999999999999999999999999874 899999999999999999999 999999999999987
No 189
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.3e-12 Score=114.91 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
....+|||+|||..+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 456899999999999999999999999999999985 55999999999999999999999999999999999976
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 190
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.3e-12 Score=121.18 Aligned_cols=80 Identities=30% Similarity=0.411 Sum_probs=68.9
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||..+|+++|+++|..||.+..+. ..++..++.++|||||+|.+.++|..||. |||..|.|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP------IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC------CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE------EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4568999999999999999999999999754321 22455588999999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 97 l~v~~a~ 103 (115)
T 2cpx_A 97 LVIEFGK 103 (115)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 9998643
No 191
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.34 E-value=2.9e-12 Score=117.29 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=70.5
Q ss_pred cCCCceEEEcCCCc-ccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 571 KDSPHKIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 571 ~~~~~~L~V~nLp~-~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....++|||+|||. .+++++|+++|++||.|..|.+ .+|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34578999999998 9999999999999999999988 4899999999999999999999999999999999998
Q ss_pred ccC
Q 002093 650 VLD 652 (967)
Q Consensus 650 ~~~ 652 (967)
.+.
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 192
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.34 E-value=1.7e-12 Score=122.08 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=63.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhh-hhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFL-LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG-~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....+|||+|||+.+|+++|+++|+.|| .+.. +.+....++|||||+|.+.++|..|++ |||..|.|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~----------v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTF----------SSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE----------EECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE----------EEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4457999999999999999999999999 4222 122234689999999999999999998 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
.|+|...
T Consensus 96 ~i~V~~a 102 (111)
T 2jvr_A 96 VITVERD 102 (111)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 9999853
No 193
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.34 E-value=9.6e-13 Score=117.79 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V 542 (967)
.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+.|||..|.|+.|.|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVT------ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEE------EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEE
Confidence 47999999999999999999999999644321 224445788999999999999999999999999999999999
Q ss_pred eCC
Q 002093 543 KRP 545 (967)
Q Consensus 543 ~rp 545 (967)
.+.
T Consensus 80 ~~a 82 (89)
T 3ucg_A 80 IPK 82 (89)
T ss_dssp EET
T ss_pred EEc
Confidence 854
No 194
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.34 E-value=8.8e-13 Score=119.63 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=66.2
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||.+..+. .+.+ ..+.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVT------ICKD-REGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEEC-TTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE------EEEC-CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 34568999999999999999999999999644321 1122 237789999999999999999999 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
+|.|.++
T Consensus 86 ~l~V~~a 92 (95)
T 2ywk_A 86 PINVSGP 92 (95)
T ss_dssp ECEEECC
T ss_pred EEEEEEc
Confidence 9999854
No 195
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.7e-12 Score=120.67 Aligned_cols=75 Identities=21% Similarity=0.151 Sum_probs=63.7
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccC--ceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG--CSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng--~~l~ 536 (967)
..+.++|||+|||+.+|+++|+++|++||. |.++.+...+|||||+|.+.++|..|+. |++ ..|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGT------------ICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 356789999999999999999999999994 3444444569999999999999999999 865 4599
Q ss_pred cceeEEeCCC
Q 002093 537 GSILKIKRPK 546 (967)
Q Consensus 537 Gr~l~V~rp~ 546 (967)
|++|.|.+..
T Consensus 80 Gr~l~V~~a~ 89 (104)
T 1wex_A 80 GQQAFFNYST 89 (104)
T ss_dssp SSBCEEEECS
T ss_pred CEEEEEEEcc
Confidence 9999998543
No 196
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=121.54 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCCCcc------hHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCc
Q 002093 461 RPMRRLCVENLPLSA------SEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC 533 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~------TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~ 533 (967)
...++|||+|||+.+ |+++|+++|+.||.+..+ . |. ..++.++|||||+|.+.++|..|+. |||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v---~----i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND---F----YP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEE---E----CC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEE---E----ee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 456799999999999 899999999999964432 1 12 3567899999999999999999999 9999
Q ss_pred eeecc-eeEEeCCCcc
Q 002093 534 SFSGS-ILKIKRPKEF 548 (967)
Q Consensus 534 ~l~Gr-~l~V~rp~~~ 548 (967)
.|.|+ +|+|.++.+.
T Consensus 85 ~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDF 100 (105)
T ss_dssp ECSTTCEEEEECSCCC
T ss_pred ccCCCceEEEEEcchH
Confidence 99999 9999976544
No 197
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=8.2e-13 Score=122.45 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=67.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH------LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEE------EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 4567999999999999999999999999644321 22444568889999999999999999999 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.++
T Consensus 95 l~V~~a 100 (106)
T 1p27_B 95 ISVDWC 100 (106)
T ss_dssp CEEEES
T ss_pred EEEEee
Confidence 999853
No 198
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=8.2e-13 Score=121.86 Aligned_cols=81 Identities=26% Similarity=0.327 Sum_probs=68.7
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIY------LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 35578999999999999999999999999644321 22444578889999999999999999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|+|.+..
T Consensus 86 ~l~v~~a~ 93 (103)
T 2cq0_A 86 ILNVEWAK 93 (103)
T ss_dssp ECEEEESS
T ss_pred EEEEEECC
Confidence 99998543
No 199
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=125.56 Aligned_cols=82 Identities=11% Similarity=0.192 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeE--EEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCC----ccCCeE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKA--YHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGL----KVGGQV 643 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~--v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~----~~~Gr~ 643 (967)
...++|||+|||..+|+++|+++|++||.|.. |+|+.|. +.++|||||+|.+. +|.+|+..|||. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 35689999999999999999999999999976 9999886 45699999999999 999999999999 999999
Q ss_pred EEEEEcccCCC
Q 002093 644 LTAVQAVLDGS 654 (967)
Q Consensus 644 I~V~~a~~~~~ 654 (967)
|.|.++.+...
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999977644
No 200
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.2e-12 Score=119.89 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=66.1
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|+.||. |..+.+..++|||||+|.+.++|..|+. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGK------------AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCC------------CSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCC------------eEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 356789999999999999999999999994 3455556779999999999999999998 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
+|.|.++.
T Consensus 80 ~l~v~~a~ 87 (99)
T 2cpj_A 80 QLRVRFAC 87 (99)
T ss_dssp CCEEEESS
T ss_pred eEEEEEcC
Confidence 99998643
No 201
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.4e-12 Score=122.61 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=78.6
Q ss_pred CCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCC
Q 002093 676 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTND 755 (967)
Q Consensus 676 ~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~ 755 (967)
..++++|+|.||+.+.+|. .++++|+++.+||+++|++||.|+.|.|+.. ..+|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~-~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFE-DDPLVLNEIREDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHH-HCSHHHHHHHHHHHHHGGGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhc-cCHHHHHHHHHHHHHHHHccCCEeEEEEecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 4679999999999887753 4567889999999999999999999977432 26899999999999999999999999
Q ss_pred ccCCCcceeEEeec
Q 002093 756 ETNEKGERLEEVTD 769 (967)
Q Consensus 756 ~~~~r~~~v~~~~~ 769 (967)
.|.|+.+.|.....
T Consensus 88 ~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 88 WFGGRQITAQAWDG 101 (112)
T ss_dssp EETTEECEEEECCS
T ss_pred EECCcEEEEEEeCC
Confidence 99999999987644
No 202
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2.2e-12 Score=124.23 Aligned_cols=80 Identities=13% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCceEEEcCCCcccCHHHHH----HHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVM----EIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~----e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
+.++|||+|||..+++++|+ ++|++||.|..|.+.. .+.++|||||+|.+.++|..|+..|||..|.|++|.|.+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 46799999999999999876 7999999999988754 345799999999999999999999999999999999999
Q ss_pred cccCC
Q 002093 649 AVLDG 653 (967)
Q Consensus 649 a~~~~ 653 (967)
+.+..
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 96543
No 203
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.34 E-value=8.7e-13 Score=116.34 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=61.7
Q ss_pred CEEEEeCCCCcc------hHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 464 RRLCVENLPLSA------SEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 464 r~LyVgNLp~~~------TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
++|||+|||..+ |+++|+++|+.||.+..+ . +. ..++.++|||||+|.+.++|..|+. |||..|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v---~----i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND---F----YP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEE---E----CC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEE---E----ec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 689999999999 889999999999964432 1 12 3567899999999999999999999 9999999
Q ss_pred cc-eeEE
Q 002093 537 GS-ILKI 542 (967)
Q Consensus 537 Gr-~l~V 542 (967)
|+ +|+|
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 99 8876
No 204
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.34 E-value=4.1e-12 Score=117.34 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 346899999999999999999999999999999885 67999999999999999999999999999999999977
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 83 ~~~ 85 (103)
T 2dgu_A 83 PDQ 85 (103)
T ss_dssp CCC
T ss_pred Ccc
Confidence 554
No 205
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.33 E-value=1.6e-12 Score=120.30 Aligned_cols=80 Identities=25% Similarity=0.269 Sum_probs=66.9
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec-
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG- 537 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G- 537 (967)
....++|||+|||+.+|+++|+++|+.||.+..+. |....++.++|||||+|.+.++|..||. |||..|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT-------VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 34578999999999999999999999999644331 2222367889999999999999999999 99999988
Q ss_pred --ceeEEeCCC
Q 002093 538 --SILKIKRPK 546 (967)
Q Consensus 538 --r~l~V~rp~ 546 (967)
++|.|.++.
T Consensus 85 ~~~~l~V~~a~ 95 (105)
T 2dnh_A 85 ASSSLVVKFAD 95 (105)
T ss_dssp CSSCCEEEESC
T ss_pred CCccEEEEECc
Confidence 999998543
No 206
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.33 E-value=2.3e-12 Score=120.52 Aligned_cols=76 Identities=25% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456899999999999999999999999999999986 79999999999999999999999999999999999976
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 207
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=1.3e-12 Score=124.22 Aligned_cols=81 Identities=26% Similarity=0.323 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|+.||.+.++..+. .+.+.. ++++|||||+|.+.++|.+||.|||..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~---i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVH---FIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEE---EEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEE---EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 4568999999999999999999999999633333332 233433 889999999999999999999999999999999
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
.|.+.
T Consensus 91 ~V~~a 95 (118)
T 2db1_A 91 EVFKS 95 (118)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99853
No 208
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.2e-12 Score=119.47 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....+|||+|||..+++++|+++|++||.|..+.++.+.. .++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3568999999999999999999999999998777766643 45899999999999999999999999999999999998
Q ss_pred cc
Q 002093 650 VL 651 (967)
Q Consensus 650 ~~ 651 (967)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 209
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.8e-12 Score=119.20 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=70.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
..++|||+|||..+++++|+++|++||.|..|.+.. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 458999999999999999999999999999999873 689999999999999999999999999999999988854
No 210
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.8e-12 Score=117.05 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=64.9
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|..||.+. +.+.++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-----------~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-----------LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-----------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-----------EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4567999999999999999999999999521 233456899999999999999999998 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 86 l~V~~a 91 (97)
T 2e5j_A 86 LRVALA 91 (97)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999853
No 211
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.4e-12 Score=113.48 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=69.1
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
++|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999998875 4569999999999999999999999 9999999999887
No 212
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=115.61 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecC-CCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR-EKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~-skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
..++|||+|||+++|+++|+++|+.||.+..+. .+.+..++. ++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMID------MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 457999999999999999999999999643321 223333344 89999999999999999999 9999999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|.|..
T Consensus 77 l~v~~ 81 (88)
T 4a8x_A 77 ITATA 81 (88)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99984
No 213
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.2e-12 Score=123.55 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhh-cCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLS-SGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~-~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|..||.+ ..+. .+.+. ++.++|||||+|.+.++|.+||.+|+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~------i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH------VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE------ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE------EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3456899999999999999999999999864 3321 22344 78899999999999999999999999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
.|.|.++
T Consensus 85 ~i~v~~a 91 (114)
T 2cpy_A 85 EAFVHVV 91 (114)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999854
No 214
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.8e-12 Score=118.04 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=65.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||.+..+. -...+.++|||||+|.+.++|..||. ||+..|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~---------i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDID---------LKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---------ECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---------EEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34568999999999999999999999999533221 12235579999999999999999997 999999999
Q ss_pred eeEEeCCCc
Q 002093 539 ILKIKRPKE 547 (967)
Q Consensus 539 ~l~V~rp~~ 547 (967)
.|.|.+...
T Consensus 90 ~l~V~~a~~ 98 (109)
T 1x4a_A 90 RLRVEFPRS 98 (109)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEccc
Confidence 999986443
No 215
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.33 E-value=6.3e-13 Score=122.28 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=71.1
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC---CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE---DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~---~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
....++|||+|||..+++++|+++|++|| |..|.|+.+. +.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34578999999999999999999999999 9999998875 456999999999999999999 899999999999999
Q ss_pred EcccC
Q 002093 648 QAVLD 652 (967)
Q Consensus 648 ~a~~~ 652 (967)
++.+.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98654
No 216
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.33 E-value=1.6e-12 Score=121.41 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH------LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4567999999999999999999999999643321 22444568889999999999999999999 9999999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|.|.+
T Consensus 98 l~V~~ 102 (110)
T 1oo0_B 98 IQVDW 102 (110)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99985
No 217
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.33 E-value=7.7e-13 Score=120.02 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=70.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...+|||+|||..+++++|+++|++||.|..+.++.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 468999999999999999999999999998877777643 458999999999999999999999999999999998874
No 218
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.33 E-value=5.2e-13 Score=120.00 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=70.1
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
++|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.+ |.+|+..|||..|+|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999998875 456999999999999 99999999999999999999999765
Q ss_pred CC
Q 002093 653 GS 654 (967)
Q Consensus 653 ~~ 654 (967)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 219
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=125.72 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCc----e
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC----S 534 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~----~ 534 (967)
....++|||+|||+.+|+++|+++|..||.+... .| ..+.+..++.++|||||+|.+. +|..|+. |||. .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~-~v---~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSS-NV---RVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTT-TE---ECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccee-eE---EEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3556799999999999999999999999974320 01 2446667899999999999999 9999999 9999 9
Q ss_pred eecceeEEeCCC
Q 002093 535 FSGSILKIKRPK 546 (967)
Q Consensus 535 l~Gr~l~V~rp~ 546 (967)
|.|+.|.|.+..
T Consensus 95 ~~gr~l~V~~a~ 106 (131)
T 2m2b_A 95 IDGKTINVEFAK 106 (131)
T ss_dssp GGGCCCCCEECC
T ss_pred CCCEEEEEEECC
Confidence 999999998644
No 220
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.4e-12 Score=119.86 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCC-eeEEEEe-ecCC--CCCCEEEEeecCcchHHHHHHHhC--CCccCCeEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGP-LKAYHFE-VNED--HEEPCAFIEYVDQLVTPKAIAGLN--GLKVGGQVLTA 646 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~-V~~v~l~-~d~~--~skG~aFVeF~~~e~A~~Al~~Ln--G~~~~Gr~I~V 646 (967)
..++|||+|||..+++++|+++|++||. |..|.|+ .+.. .++|||||+|.+.++|.+|+..|+ +..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4679999999999999999999999998 9999987 5544 569999999999999999999996 59999999999
Q ss_pred EEcccCCC
Q 002093 647 VQAVLDGS 654 (967)
Q Consensus 647 ~~a~~~~~ 654 (967)
.++.+...
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99977554
No 221
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=9.8e-13 Score=123.71 Aligned_cols=76 Identities=29% Similarity=0.394 Sum_probs=65.2
Q ss_pred CCCCCEEEEeCCCCc-chHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-cc--Ccee
Q 002093 460 NRPMRRLCVENLPLS-ASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD--GCSF 535 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~-~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-ln--g~~l 535 (967)
..+.++|||+|||++ +|+++|+++|++||. |.++.+.+++|||||+|.+.++|..|+. || +..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGK------------IKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 456789999999998 999999999999994 3455556789999999999999999999 76 4679
Q ss_pred ecceeEEeCCCc
Q 002093 536 SGSILKIKRPKE 547 (967)
Q Consensus 536 ~Gr~l~V~rp~~ 547 (967)
.|++|.|.+...
T Consensus 90 ~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 90 QGRCVKVDLSEK 101 (112)
T ss_dssp SSSCCEEEEECS
T ss_pred CCEEEEEEECcc
Confidence 999999986443
No 222
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.7e-12 Score=123.33 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=63.0
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-cc--Cceeec
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD--GCSFSG 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-ln--g~~l~G 537 (967)
.+.++|||+|||+.+|+++|+++|++||. |.++.+...+|||||+|.+.++|..|+. |+ +..|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSC------------CCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45689999999999999999999999995 3334444468999999999999999999 87 468999
Q ss_pred ceeEEeCCC
Q 002093 538 SILKIKRPK 546 (967)
Q Consensus 538 r~l~V~rp~ 546 (967)
++|.|.+..
T Consensus 97 r~l~V~~a~ 105 (119)
T 2ad9_A 97 QPIYIQFSN 105 (119)
T ss_dssp BCCEEEECS
T ss_pred eEEEEEEcc
Confidence 999998543
No 223
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=119.02 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=66.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|+.||.+..+. .+.+. ++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLR------LVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4568999999999999999999999999643321 12222 67889999999999999999998 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|+|.+.
T Consensus 88 l~v~~a 93 (100)
T 2do4_A 88 IKVAIS 93 (100)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999853
No 224
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.32 E-value=3.7e-12 Score=126.68 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCC--CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~--~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999999999998854 35899999999999999999999999999999999999
Q ss_pred ccCC
Q 002093 650 VLDG 653 (967)
Q Consensus 650 ~~~~ 653 (967)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 225
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=3.4e-12 Score=116.43 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee--c
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS--G 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~--G 537 (967)
.+.++|||+|||+.+|+++|+++|+.||. |..+.+...+|||||+|.+.++|..|+. |||..|. |
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGS------------IRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 45679999999999999999999999994 4445555568999999999999999999 9999999 9
Q ss_pred ceeEEeCC
Q 002093 538 SILKIKRP 545 (967)
Q Consensus 538 r~l~V~rp 545 (967)
+.|.|.+.
T Consensus 83 ~~l~V~~a 90 (97)
T 1why_A 83 RRLRVDFA 90 (97)
T ss_dssp CBCEEEEC
T ss_pred cEEEEEEC
Confidence 99999853
No 226
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.32 E-value=3e-12 Score=122.22 Aligned_cols=79 Identities=10% Similarity=0.275 Sum_probs=73.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
.++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 5799999999999999999999999999999998874 456999999999999999999 7999999999999999865
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 227
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.32 E-value=3.1e-12 Score=119.71 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+..+ |..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 456899999999999999999999999999999999885 456999999999999999999976 59999999999999
Q ss_pred ccCC
Q 002093 650 VLDG 653 (967)
Q Consensus 650 ~~~~ 653 (967)
.+..
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 228
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=4.8e-12 Score=113.81 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=63.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||.++|+++|+++|+.||. |..+.+. +|||||+|.+.++|..|+. |||..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGK------------VLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSC------------EEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 45689999999999999999999999994 2333332 7999999999999999998 9999999999
Q ss_pred eEEeCCCc
Q 002093 540 LKIKRPKE 547 (967)
Q Consensus 540 l~V~rp~~ 547 (967)
|+|.+...
T Consensus 72 l~v~~a~~ 79 (90)
T 2dnq_A 72 INVEASKN 79 (90)
T ss_dssp CEEECSSC
T ss_pred EEEEECCC
Confidence 99996543
No 229
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=9.5e-12 Score=113.91 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhc--CCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAF--GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~--G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++| |.|..|.+ .+|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356899999999999999999999999 89998876 4789999999999999999999999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 230
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.9e-12 Score=121.67 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=70.4
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
.++|||+|||..+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57899999999999999999999999999998864 5899999999999999999999999999999999999654
No 231
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.32 E-value=1.7e-12 Score=120.56 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=66.0
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|..||.+..+. .+.+. ++.++|||||+|.+.++|.+|+. |||..|.|+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAA------VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4567999999999999999999999999643321 22333 77889999999999999999999 9999999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|.|..
T Consensus 100 l~V~~ 104 (107)
T 3ulh_A 100 MNIQL 104 (107)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99984
No 232
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=2e-12 Score=119.33 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=68.1
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
..+.++|||+|||+.+|+++|+++|..|| |..+. .+.+..++.++|||||+|.+.++|..||.|||..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g----i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS----IRSVR---LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC----EEEEE---EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC----ceEEE---EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 34578999999999999999999999986 33332 335556788999999999999999999999999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 85 l~V~~a~ 91 (103)
T 2dng_A 85 LRVDIAE 91 (103)
T ss_dssp CEEEECC
T ss_pred EEEEEec
Confidence 9998543
No 233
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.32 E-value=1.5e-12 Score=118.53 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCcccCHHHHH----HHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVM----EIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~----e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
.+.++|||+|||..+++++|+ ++|++||.|..|.+... +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356899999999999999999 99999999999988642 3458999999999999999999999999999999999
Q ss_pred EcccCC
Q 002093 648 QAVLDG 653 (967)
Q Consensus 648 ~a~~~~ 653 (967)
++.+..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997654
No 234
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.6e-12 Score=117.66 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=66.4
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||..+|+++|+++|..||. |..+.+...+|||||+|.+.++|..|+. |||..|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQ------------IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 356789999999999999999999999993 4455555569999999999999999998 999999999
Q ss_pred eeEEeCCCc
Q 002093 539 ILKIKRPKE 547 (967)
Q Consensus 539 ~l~V~rp~~ 547 (967)
.|.|.+...
T Consensus 90 ~l~v~~a~~ 98 (109)
T 1x4g_A 90 VVKCYWGKE 98 (109)
T ss_dssp ECEEECCCC
T ss_pred EEEEEecCC
Confidence 999996443
No 235
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.3e-12 Score=115.15 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=61.8
Q ss_pred CCCEEEEeCCCCcchHHHHH----HHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 462 PMRRLCVENLPLSASEKALM----EFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~----~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
..++|||+|||+.+|+++|+ ++|+.||.+..+..+ .+..+ +|||||+|.+.++|..|+. |||..|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~------~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELS------PHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC------SCCST---TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEE------eCCCC---CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45699999999999999999 999999953332111 11111 8999999999999999999 9999999
Q ss_pred cceeEEeCC
Q 002093 537 GSILKIKRP 545 (967)
Q Consensus 537 Gr~l~V~rp 545 (967)
|++|+|.++
T Consensus 79 gr~l~V~~a 87 (96)
T 2dgx_A 79 SKKILVSLA 87 (96)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEEc
Confidence 999999854
No 236
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.32 E-value=2.1e-12 Score=122.23 Aligned_cols=79 Identities=24% Similarity=0.288 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||..+|+++|+++|+.||.+..+. .+.+ .++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL------LIKD-RTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEE------EECS-TTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4567999999999999999999999999644431 1122 278899999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.++.
T Consensus 78 l~V~~a~ 84 (116)
T 2fy1_A 78 IKVEQAK 84 (116)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9998654
No 237
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.31 E-value=2e-12 Score=116.52 Aligned_cols=78 Identities=22% Similarity=0.209 Sum_probs=66.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||..+|+++|+++|..||.+..+ .+. ..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~-------~i~-~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYA-------DIK-MENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEE-------EEE-ESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-------EEE-ccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 456899999999999999999999999964432 111 1467789999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|+|.+..
T Consensus 78 l~v~~a~ 84 (92)
T 2dgv_A 78 IDVRIDR 84 (92)
T ss_dssp CCCEECS
T ss_pred EEEEEcC
Confidence 9998543
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.31 E-value=4.5e-12 Score=123.20 Aligned_cols=79 Identities=16% Similarity=0.344 Sum_probs=72.3
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
.....+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999998874 34699999999999999999999999999999999987
Q ss_pred c
Q 002093 649 A 649 (967)
Q Consensus 649 a 649 (967)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 239
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=2e-12 Score=121.43 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=65.7
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
+..++|||+|||+.+|+++|+++|..|| .|..+.+..++|||||+|.+.++|..|+. |||..|.|++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G------------~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFG------------SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTS------------CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC------------CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 3457999999999999999999999999 34555566789999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 76 l~V~~a~ 82 (111)
T 1whx_A 76 LYLEWAP 82 (111)
T ss_dssp CEEEEEE
T ss_pred EEEEECC
Confidence 9998643
No 240
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.3e-12 Score=119.18 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|..|| +..+. .+.+..+ +.++|||||+|.+.++|.+||.|||..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~------i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR------LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEE------CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEE------EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 4568999999999999999999999998 44332 2344555 88999999999999999999999999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|...
T Consensus 86 l~V~~a 91 (104)
T 1wi8_A 86 IRVDVA 91 (104)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999854
No 241
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.8e-12 Score=119.55 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=67.2
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|..||.+..+. |....++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRAD-------ILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 45678999999999999999999999999644321 2222347789999999999999999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|.|.+..
T Consensus 85 ~l~v~~a~ 92 (114)
T 2do0_A 85 PMHVKMDE 92 (114)
T ss_dssp ECEEEECS
T ss_pred EEEEEEcc
Confidence 99998543
No 242
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.3e-12 Score=120.46 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+||. ||+ .|.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAV------VITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEE------ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 45678999999999999999999999999644332 22444568899999999999999999999 898 89999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|.|.+..
T Consensus 87 ~l~V~~a~ 94 (116)
T 2cqd_A 87 KANVNLAY 94 (116)
T ss_dssp ECEEEEST
T ss_pred EEEEEEcc
Confidence 99998643
No 243
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=119.45 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|..||.+..+. .+.+ ++.++|||||+|.+.++|..||. |||..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAK------VMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEE------EEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4678999999999999999999999999643321 1222 67889999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 85 l~V~~a~ 91 (103)
T 2d9p_A 85 LYVALAQ 91 (103)
T ss_dssp CEEEECS
T ss_pred EEEEEec
Confidence 9998644
No 244
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.31 E-value=1.1e-12 Score=113.53 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=64.3
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEEeC
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKR 544 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V~r 544 (967)
+|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+.+++..|.|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIE------LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEEC------CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 599999999999999999999999644331 23455668899999999999999999999999999999999873
No 245
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.8e-12 Score=121.92 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCCCEEEEeCCCCcchHHHHH----HHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee
Q 002093 461 RPMRRLCVENLPLSASEKALM----EFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~----~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l 535 (967)
.+.++|||+|||+.+++++|+ ++|++||.+..+ .-..++.++|||||+|.+.++|..|+. |||..|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v---------~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDI---------VVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE---------EECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEE---------EeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 446799999999999999876 699999964321 112357889999999999999999998 999999
Q ss_pred ecceeEEeCCC
Q 002093 536 SGSILKIKRPK 546 (967)
Q Consensus 536 ~Gr~l~V~rp~ 546 (967)
.|++|+|.+..
T Consensus 98 ~gr~l~V~~a~ 108 (127)
T 2a3j_A 98 QGNPLVITFSE 108 (127)
T ss_dssp TTSCCEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999998643
No 246
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=5.1e-12 Score=118.86 Aligned_cols=81 Identities=14% Similarity=0.258 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCe----eEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPL----KAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V----~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
...++|||+|||..+++++|+++|++||.| ..+.+. .+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 356899999999999999999999999998 445444 45679999999999999999999999999999999999
Q ss_pred EcccCCC
Q 002093 648 QAVLDGS 654 (967)
Q Consensus 648 ~a~~~~~ 654 (967)
++.+...
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9976543
No 247
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.31 E-value=1.7e-12 Score=125.41 Aligned_cols=80 Identities=25% Similarity=0.314 Sum_probs=68.4
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+||. |||..|.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS------IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEE------EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35568999999999999999999999999644321 22444568899999999999999999999 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
+|.|.+.
T Consensus 117 ~l~V~~a 123 (129)
T 2kxn_B 117 RIRVDFS 123 (129)
T ss_dssp CCEESCC
T ss_pred EEEEEEe
Confidence 9999854
No 248
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6.6e-12 Score=115.75 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=65.3
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||.+..+..+ . ....++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~------~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII------F--NERGSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEE------C--CTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------e--cCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999999999963332111 1 123479999999999999999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|.|.+..
T Consensus 84 ~l~v~~a~ 91 (103)
T 2cq3_A 84 KIEVNNAT 91 (103)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcc
Confidence 99998643
No 249
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=6e-13 Score=118.27 Aligned_cols=78 Identities=12% Similarity=0.277 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 357899999999999999999999999999999998874 456999999999999999999999999999999887654
No 250
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=5.7e-12 Score=113.94 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCC-eeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCC-CccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGP-LKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNG-LKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~-V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG-~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 35689999999999999999999999999 6655552 489999999999999999999999 9999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 76543
No 251
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=123.80 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=67.9
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+|+. |||..|.|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------CCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEE------EeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35678999999999999999999999999644331 22444668899999999999999999998 999999999
Q ss_pred eeEEeC
Q 002093 539 ILKIKR 544 (967)
Q Consensus 539 ~l~V~r 544 (967)
.|+|.+
T Consensus 134 ~l~v~~ 139 (140)
T 2ku7_A 134 TIRVNL 139 (140)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999974
No 252
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.7e-12 Score=120.02 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=65.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||..+|+++|+++|+.||.+..+..+ .+ .+.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~--~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII------FN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEEC------CB--TTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEE------EC--CCCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4567899999999999999999999999965443211 11 24579999999999999999999 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
.|.|.+.
T Consensus 98 ~l~V~~a 104 (109)
T 2err_A 98 KIEVNNA 104 (109)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 9999853
No 253
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.2e-12 Score=121.66 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=73.3
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCe-eEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPL-KAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V-~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
+....+|||+|||..+++++|+++|+.||.| ..|.|+.+. +.++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456899999999999999999999999999 889998875 34699999999999999999986 99999999999999
Q ss_pred cccC
Q 002093 649 AVLD 652 (967)
Q Consensus 649 a~~~ 652 (967)
+.+.
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 254
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.30 E-value=2.3e-12 Score=123.30 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=67.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH------LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4567999999999999999999999999643321 22444578889999999999999999998 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 94 l~v~~a 99 (126)
T 3ex7_B 94 ISVDWC 99 (126)
T ss_dssp CEEEES
T ss_pred EEEEEe
Confidence 999854
No 255
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=119.07 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=67.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHH-hhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCce-eec
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNN-FLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS-FSG 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~-fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~-l~G 537 (967)
.+.++|||+|||+.+|+++|+++|.. ||.+..+. .+.+. ++.++|||||+|.+.++|..||. |||.. |.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK------VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEE------EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEE------EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 45689999999999999999999999 99644331 22333 78899999999999999999999 99999 999
Q ss_pred ceeEEeCC
Q 002093 538 SILKIKRP 545 (967)
Q Consensus 538 r~l~V~rp 545 (967)
++|.|.+.
T Consensus 80 ~~l~v~~a 87 (104)
T 2dhg_A 80 KPVRLSVA 87 (104)
T ss_dssp SCCCCCBC
T ss_pred EeEEEEEc
Confidence 99999854
No 256
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=120.01 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=69.0
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
....++|||+|||+.+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||..|+..|.|+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCV------IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 35678999999999999999999999999644331 234446788899999999999999999999999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 87 l~V~~a~ 93 (105)
T 2dh8_A 87 IDPKPCT 93 (105)
T ss_dssp EBCCCSC
T ss_pred EEEEEcc
Confidence 9998644
No 257
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=5.1e-12 Score=119.22 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=73.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
..++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 35899999999999999999999999999999999875 44699999999999999999987 9999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6543
No 258
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=2.4e-12 Score=122.22 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCC---eeEEEEeecCC-CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGP---LKAYHFEVNED-HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~---V~~v~l~~d~~-~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
....+|||+|||..+|+++|+++|+.||. |..|.|+.+.. .++|||||+|.+.++|.+||+ |||..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45689999999999999999999999999 88999988754 458999999999999999999 99999999999999
Q ss_pred Eccc
Q 002093 648 QAVL 651 (967)
Q Consensus 648 ~a~~ 651 (967)
++.+
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9854
No 259
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.30 E-value=1.9e-12 Score=126.25 Aligned_cols=82 Identities=24% Similarity=0.301 Sum_probs=68.0
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
....++|||+|||+.+|+++|+++|+.||.+.++..+. .+.+.. ++++|||||+|.+.++|.+||.|||..|.|+.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~---i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH---FIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEE---EEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEE---EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 35568999999999999999999999999632222221 234444 89999999999999999999999999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 117 i~V~~a 122 (136)
T 2hgl_A 117 IEVFKS 122 (136)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999853
No 260
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=121.28 Aligned_cols=81 Identities=15% Similarity=0.269 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|..||...++..+. .+.+.. +.++|||||+|.+.++|..||.+|+..|.|+.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~---i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIH---FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEE---CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEE---EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 4568999999999999999999999998632233332 334444 899999999999999999999999999999999
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
.|.+.
T Consensus 85 ~V~~a 89 (107)
T 2lmi_A 85 EVYEI 89 (107)
T ss_dssp CCEEC
T ss_pred EEEEC
Confidence 99853
No 261
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.29 E-value=6.7e-12 Score=114.88 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=62.7
Q ss_pred CCCCCEEEEeCCCC-cchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 460 NRPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 460 ~~~~r~LyVgNLp~-~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
..+.++|||+|||+ .+|+++|+++|+.||. |..+.+ .+|||||+|.+.++|..|+. |||..|.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35678999999998 9999999999999994 334443 48999999999999999999 99999999
Q ss_pred ceeEEeC
Q 002093 538 SILKIKR 544 (967)
Q Consensus 538 r~l~V~r 544 (967)
+.|.|..
T Consensus 85 ~~l~V~~ 91 (97)
T 2xnq_A 85 KKLILEV 91 (97)
T ss_dssp EECEEEE
T ss_pred EEEEEEe
Confidence 9999985
No 262
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.1e-12 Score=115.72 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=62.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccC-ceeecc
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG-CSFSGS 538 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng-~~l~Gr 538 (967)
...++|||+|||+++|+++|+++|..||.+.. .+.+ .++|||||+|.+.++|..|+. ||| ..|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~-----------~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLA-----------GQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCS-----------SCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceE-----------EEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 45679999999999999999999999995211 1111 368999999999999999999 999 999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|+|.+..
T Consensus 74 ~l~v~~a~ 81 (93)
T 2cqh_A 74 IMEVDYSV 81 (93)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcc
Confidence 99998643
No 263
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.2e-12 Score=125.33 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=68.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||.|||..|.|+.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~------~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDS------IYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTT------CEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 345799999999999999999999999964432 13456678899999999999999999999999999999999
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
.|.+.
T Consensus 97 ~V~~a 101 (124)
T 1wel_A 97 QVHPI 101 (124)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99853
No 264
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.5e-12 Score=117.22 Aligned_cols=77 Identities=16% Similarity=0.259 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCc-ccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~-~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
.+.++|||+|||. .+++++|+++|++||.|..|.| .+|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 3578999999998 9999999999999999999998 38999999999999999999999999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 265
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.29 E-value=1.1e-11 Score=115.74 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=69.9
Q ss_pred CCceEEEcCCCcc-cCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 573 SPHKIFIGGISRT-LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 573 ~~~~L~V~nLp~~-~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
..++|||+|||.. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3579999999999 999999999999999999988 589999999999999999999999999999999999965
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 266
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.9e-12 Score=119.37 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
..++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. |||..|.|+.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR------LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEE------EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 457999999999999999999999999643321 22344567889999999999999999998 99999999999
Q ss_pred EEeCCC
Q 002093 541 KIKRPK 546 (967)
Q Consensus 541 ~V~rp~ 546 (967)
.|.++.
T Consensus 81 ~v~~a~ 86 (104)
T 1p1t_A 81 RVDNAA 86 (104)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 998643
No 267
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=8.2e-12 Score=116.46 Aligned_cols=73 Identities=26% Similarity=0.343 Sum_probs=62.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec--
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG-- 537 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G-- 537 (967)
...++|||+|||+.+|+++|+++|..||. |..+.+... |||||+|.+.++|..||+ |||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSC------------EEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 45679999999999999999999999994 333333333 999999999999999999 99999999
Q ss_pred ---ceeEEeCCC
Q 002093 538 ---SILKIKRPK 546 (967)
Q Consensus 538 ---r~l~V~rp~ 546 (967)
+.|+|..+.
T Consensus 80 ~~~~~i~V~~a~ 91 (108)
T 1x4c_A 80 GETAYIRVKVDG 91 (108)
T ss_dssp SCEEEEEEEESS
T ss_pred CcceEEEEEeCC
Confidence 999998543
No 268
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.4e-12 Score=117.25 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=66.5
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|..||.+ . .+.+ .++.++|||||+|.+.++|.+||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v------~---~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI------K---VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE------E---CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE------E---EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 4567899999999999999999999999852 1 1223 678899999999999999999999 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
.|.|.+.
T Consensus 82 ~l~v~~a 88 (101)
T 2fc9_A 82 AIRLELQ 88 (101)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999854
No 269
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.4e-11 Score=113.53 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 356889999999999999999999999999999999885 4468999999999999999998 578999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 76543
No 270
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.3e-12 Score=122.94 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=67.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||..+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||.|||..|.|+.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 96 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR------IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI 96 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEE------EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEE
Confidence 3457999999999999999999999999644332 2244556889999999999999999999999999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
.|.+
T Consensus 97 ~V~~ 100 (114)
T 2cq4_A 97 IVQA 100 (114)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 271
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.5e-12 Score=122.83 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=67.6
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
..++|||+|||+.+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||.+|+..|.|+.|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV------VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVE 99 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEE------EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEE
Confidence 357999999999999999999999999644332 23444668899999999999999999999999999999999
Q ss_pred EeCCC
Q 002093 542 IKRPK 546 (967)
Q Consensus 542 V~rp~ 546 (967)
|.++.
T Consensus 100 V~~a~ 104 (116)
T 1x4b_A 100 PKRAV 104 (116)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 99643
No 272
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.2e-12 Score=119.29 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCcc--------CCe
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKV--------GGQ 642 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~--------~Gr 642 (967)
...++|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 356899999999999999999999999999999999885 34589999999999999999999999999 678
Q ss_pred EEEEEEccc
Q 002093 643 VLTAVQAVL 651 (967)
Q Consensus 643 ~I~V~~a~~ 651 (967)
+|.|.++.|
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999865
No 273
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.29 E-value=6.6e-13 Score=126.22 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=63.3
Q ss_pred ccccccccCCCcchhcccccccCCCCccccccccccccccccccCCCCCCCCCCC-Cccc----------------ccce
Q 002093 861 QLEHMSEENKSSAKEDLNLEEVNGNSEAFTGASNEMGMQSSAVENGDNENQDPNQ-GHIF----------------EPGC 923 (967)
Q Consensus 861 ~~~c~~~~n~f~~~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~e~~~-~~v~----------------~~G~ 923 (967)
++.|++|.|||+|.+ +. .|+++|+.++|++ |.|. ..|+
T Consensus 19 ps~vl~L~Nm~~~~e-l~------------------------ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~ 73 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKD-ID------------------------DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK 73 (118)
T ss_dssp SCCEEEEESCSCGGG-CC------------------------TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEE
T ss_pred CCCEEEEECCCCHHH-HH------------------------HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEE
Confidence 578999999988753 11 2344556667765 3332 1289
Q ss_pred EEEEecCHHHHHHHHHHhhccccCCceEEEEecChhhHHhh
Q 002093 924 VFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRAR 964 (967)
Q Consensus 924 VyVkF~s~eaA~~A~~aLhGR~FagR~I~A~yv~~~~Y~~~ 964 (967)
|||+|.+.++|.+|+++||||||+||+|.|.|++.+.|+..
T Consensus 74 ~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 74 IFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHTT
T ss_pred EEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcccc
Confidence 99999999999999999999999999999999999999863
No 274
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=4.7e-12 Score=116.33 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec-CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d-~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...++|||+|||..+++++|+++|++||.| .++.+ .+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 457899999999999999999999999977 45544 34569999999999999999999999999999999999997
Q ss_pred cCCC
Q 002093 651 LDGS 654 (967)
Q Consensus 651 ~~~~ 654 (967)
+...
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 275
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.8e-12 Score=118.69 Aligned_cols=81 Identities=12% Similarity=0.207 Sum_probs=71.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
+....+|||+|||..+|+++|+++|++||.+ .|.|+.+. +.++|||||+|.+.++|.+||+ +||..|+|+.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3456899999999999999999999999965 89998885 3458999999999999999995 8999999999999988
Q ss_pred ccCC
Q 002093 650 VLDG 653 (967)
Q Consensus 650 ~~~~ 653 (967)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 276
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5e-12 Score=117.16 Aligned_cols=80 Identities=11% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeE-EEEeec-CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKA-YHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~-v~l~~d-~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....+|||+|||..+++++|+++|+.||.|.. |.|+.+ .+.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 888777 345699999999999999999986 999999999999988
Q ss_pred ccC
Q 002093 650 VLD 652 (967)
Q Consensus 650 ~~~ 652 (967)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 653
No 277
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.9e-12 Score=118.77 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=66.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|..||.+.. .+. .+.+ .+++++|||||+|.+.++|.+||.+|+..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--~v~---i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i 86 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GMT---LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEE--EEE---CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcce--eEE---EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEE
Confidence 45679999999999999999999999996332 021 2234 67899999999999999999999999999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
.|..
T Consensus 87 ~v~~ 90 (104)
T 1wg5_A 87 EIFK 90 (104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 278
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.28 E-value=2.5e-12 Score=111.26 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=67.3
Q ss_pred eEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 576 KIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 576 ~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
+|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|+. ++|..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999998875 3569999999999999999998 5999999999999875
No 279
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=1.6e-12 Score=113.02 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=63.7
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..|+. ++ ..|.|++|.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECL------VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEE------EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 4799999999999999999999999644432 22344568899999999999999999999 77 9999999999
Q ss_pred eC
Q 002093 543 KR 544 (967)
Q Consensus 543 ~r 544 (967)
.+
T Consensus 74 ~~ 75 (77)
T 1uaw_A 74 KV 75 (77)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 280
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.28 E-value=5.6e-12 Score=117.83 Aligned_cols=72 Identities=33% Similarity=0.405 Sum_probs=62.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||..+|+++|+++|+.||.+. .+.+. +|||||+|.+.++|..|+. |||..|.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~------------~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMK------------EVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCC------------EEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE------------EEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45678999999999999999999999999522 22222 8999999999999999999 999999999
Q ss_pred eeEEeCC
Q 002093 539 ILKIKRP 545 (967)
Q Consensus 539 ~l~V~rp 545 (967)
.|.|.+.
T Consensus 94 ~l~V~~a 100 (108)
T 2jvo_A 94 PLEVVYS 100 (108)
T ss_dssp ECEEESC
T ss_pred EEEEEEe
Confidence 9999853
No 281
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.28 E-value=2.4e-12 Score=117.08 Aligned_cols=78 Identities=12% Similarity=0.217 Sum_probs=70.4
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
...+|||+|||..+++++|+++|+.||.|..+ ...+.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 46899999999999999999999999988766 344557999999999999999999999999999999999999765
Q ss_pred C
Q 002093 653 G 653 (967)
Q Consensus 653 ~ 653 (967)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 282
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=2.6e-12 Score=120.80 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=70.6
Q ss_pred cCCCceEEEcCCCcc-cCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCC--CccCCeEEEEE
Q 002093 571 KDSPHKIFIGGISRT-LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNG--LKVGGQVLTAV 647 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~-~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG--~~~~Gr~I~V~ 647 (967)
..+..+|||+|||.. +++++|+++|++||.|..|.|++ ++|||||+|.+.++|..|+..|++ ..|.|+.|.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345689999999998 99999999999999999999975 489999999999999999998864 66999999999
Q ss_pred EcccCC
Q 002093 648 QAVLDG 653 (967)
Q Consensus 648 ~a~~~~ 653 (967)
++....
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 996543
No 283
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.28 E-value=9.5e-13 Score=121.08 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=65.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeee-eecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGC-VIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~-~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|+.|| +..+. .+.+. .++.++|||||+|.+.++|..||.|||..|.|+.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~------i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR------LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEE------CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE------EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 4568999999999999999999999998 54432 22333 4788999999999999999999999999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 90 l~V~~a 95 (100)
T 2j76_E 90 IRVDVA 95 (100)
T ss_dssp CCCEEC
T ss_pred EEEEec
Confidence 999853
No 284
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.28 E-value=1.3e-12 Score=117.31 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=65.1
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecceeEE
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V 542 (967)
++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.+ |..|+. |||..|.|++|.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVK------LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEE------ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEE------EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 5899999999999999999999999644432 2244456889999999999999 999999 9999999999999
Q ss_pred eCCC
Q 002093 543 KRPK 546 (967)
Q Consensus 543 ~rp~ 546 (967)
.++.
T Consensus 75 ~~a~ 78 (90)
T 2ki2_A 75 TEAN 78 (90)
T ss_dssp EEC-
T ss_pred EEcC
Confidence 8643
No 285
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=6.8e-12 Score=115.66 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
....++|||+|||+.+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||. ++..|.|+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~ 84 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ------VKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW 84 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEE------EEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeE
Confidence 45678999999999999999999999999644321 23444568899999999999999999999 577899999
Q ss_pred eEEeCCCc
Q 002093 540 LKIKRPKE 547 (967)
Q Consensus 540 l~V~rp~~ 547 (967)
|.|.+...
T Consensus 85 l~v~~a~~ 92 (103)
T 2cqg_A 85 CDCKLPNS 92 (103)
T ss_dssp EEEECCCT
T ss_pred EEEEecCC
Confidence 99986443
No 286
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=111.76 Aligned_cols=73 Identities=26% Similarity=0.387 Sum_probs=62.7
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||.+ ..+.+. ++||||+|.+.++|..|+. |||..|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v------------~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPV------------IECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCC------------CEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 3556899999999999999999999999942 333332 5699999999999999998 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|+|.+..
T Consensus 73 ~l~V~~a~ 80 (92)
T 2dgt_A 73 RMHVQLST 80 (92)
T ss_dssp EEEEEESS
T ss_pred EEEEEEcc
Confidence 99998643
No 287
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.27 E-value=6.4e-12 Score=120.04 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=67.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|+.||.+..+. .+.+. ++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA------VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEE------EECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4567999999999999999999999999644331 22333 78899999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|+|..+.
T Consensus 106 l~V~~a~ 112 (124)
T 2kt5_A 106 MDIQLVA 112 (124)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9998543
No 288
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.9e-12 Score=114.46 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=70.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEE-EEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAY-HFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v-~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...+|||+|||..+++++|+++|++||.|..| .|+.+.. .|.|||+|.+.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 46899999999999999999999999999999 4777643 34599999999999999999999999999999999977
Q ss_pred C
Q 002093 652 D 652 (967)
Q Consensus 652 ~ 652 (967)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 289
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.27 E-value=3.2e-12 Score=119.57 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=64.9
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
....++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||..++..|.|+.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~------i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECL------VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEE------ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEE------EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 45678999999999999999999999999644332 224445688999999999999999999995569999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 96 l~V~~a 101 (109)
T 2rs2_A 96 IDPKVA 101 (109)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999853
No 290
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.27 E-value=6.7e-12 Score=114.21 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=64.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHH----HHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCce
Q 002093 460 NRPMRRLCVENLPLSASEKALM----EFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS 534 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~----~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~ 534 (967)
..+.++|||+|||..+|+++|+ ++|+.||.+..+ .-..++.++|||||+|.+.++|..|+. |||..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v---------~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDI---------LVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEE---------ECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEE---------EEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3567899999999999999999 999999953321 111356789999999999999999999 99999
Q ss_pred eecceeEEeCC
Q 002093 535 FSGSILKIKRP 545 (967)
Q Consensus 535 l~Gr~l~V~rp 545 (967)
|.|++|.|.++
T Consensus 76 ~~g~~l~v~~a 86 (97)
T 1nu4_A 76 FYDKPMRIQYA 86 (97)
T ss_dssp ETTEECEEEEC
T ss_pred ECCcEEEEEEc
Confidence 99999999854
No 291
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.3e-12 Score=114.28 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|..| .+.. +. .+.+ .++.++|||||+|.+.++|.+||.|||..|.|+.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~---v~---i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA---IR---IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSE---EE---EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceE---EE---EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEE
Confidence 456899999999999999999999988 4333 21 2233 67888999999999999999999999999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
.|.+
T Consensus 80 ~v~~ 83 (91)
T 2dgw_A 80 EVFR 83 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9984
No 292
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.27 E-value=3.7e-12 Score=121.50 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
..++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||.|||..|.|+.|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRIT------ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIK 108 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEE------EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 357999999999999999999999999644321 22444678899999999999999999999999999999999
Q ss_pred EeCCC
Q 002093 542 IKRPK 546 (967)
Q Consensus 542 V~rp~ 546 (967)
|.+..
T Consensus 109 V~~a~ 113 (124)
T 2jwn_A 109 VLPKR 113 (124)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 98643
No 293
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.5e-12 Score=112.87 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=67.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
...+|||+|||..+++++|+++|++||.|..| +.+..+++ ||||+|.+.++|.+|+. |||..|+|+.|.|.++.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 45799999999999999999999999999987 44544444 99999999999999999 9999999999999987554
Q ss_pred C
Q 002093 653 G 653 (967)
Q Consensus 653 ~ 653 (967)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 294
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=111.20 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=63.0
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
....++|||+|||+.+|+++|+++|+.||. |..+.+. ++||||+|.+.++|..|+. |||..|.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGR------------VIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 355789999999999999999999999994 3333333 5699999999999999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|.|.+..
T Consensus 72 ~l~v~~a~ 79 (90)
T 2dnp_A 72 RINVELST 79 (90)
T ss_dssp ECEEEESC
T ss_pred EEEEEECC
Confidence 99998643
No 295
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.27 E-value=4.7e-12 Score=134.34 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcC--CeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFG--PLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G--~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
...+|||+||+..+|+++|+++|++|| .|..|.|+.++ +.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999985 44689999999999999999999999999999999999
Q ss_pred ccc
Q 002093 649 AVL 651 (967)
Q Consensus 649 a~~ 651 (967)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 296
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.27 E-value=5e-12 Score=123.89 Aligned_cols=84 Identities=24% Similarity=0.273 Sum_probs=69.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcc--cccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQ--HVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~--~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
..+.++|||+|||+.+|+++|+++|..||.+..+. .+. .|....++.++|||||+|.+.++|..||. |||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~---di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMF---DIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHC---EEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccee---eEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 34568999999999999999999999999755431 110 12334689999999999999999999999 9999999
Q ss_pred cceeEEeCCC
Q 002093 537 GSILKIKRPK 546 (967)
Q Consensus 537 Gr~l~V~rp~ 546 (967)
|++|.|.++.
T Consensus 119 g~~l~V~~a~ 128 (143)
T 3egn_A 119 GKPMVVQFAR 128 (143)
T ss_dssp TEECEEEECC
T ss_pred CcEEEEEECC
Confidence 9999998543
No 297
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2e-11 Score=111.76 Aligned_cols=75 Identities=31% Similarity=0.351 Sum_probs=63.4
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|+.||. | .|..+.. .+|||||+|.+.++|..|+. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g--------~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--G--------AVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--T--------CEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--c--------ceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356789999999999999999999999942 1 2333333 47899999999999999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|.|.+..
T Consensus 80 ~l~v~~a~ 87 (99)
T 2cpd_A 80 PIEVTLAK 87 (99)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99998643
No 298
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.1e-11 Score=115.30 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=66.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhh-hcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-cc--Cceee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLL-SSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD--GCSFS 536 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~-~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-ln--g~~l~ 536 (967)
.+.++|||+|||+.+|+++|+++|..||. +..+..+ ..+..++.++|||||+|.+.++|..|+. || +..|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~-----~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVY-----ASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECC-----SSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEE-----ccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 45679999999999999999999999985 3332111 1344567899999999999999999999 95 59999
Q ss_pred cceeEEeCCC
Q 002093 537 GSILKIKRPK 546 (967)
Q Consensus 537 Gr~l~V~rp~ 546 (967)
|+.|+|.++.
T Consensus 81 g~~l~V~~a~ 90 (109)
T 2dis_A 81 GHQIAVDWAE 90 (109)
T ss_dssp TBCCEEEESC
T ss_pred CCeEEEEEcC
Confidence 9999998654
No 299
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=1.7e-12 Score=119.37 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec--CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d--~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...+|||+|||..+++++|+++|++||.|.. .++.+ .+.++|||||+|.+.++|.+|++ |||..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999998877 44444 34579999999999999999998 99999999999999997
Q ss_pred cCC
Q 002093 651 LDG 653 (967)
Q Consensus 651 ~~~ 653 (967)
+..
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 300
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.26 E-value=3.1e-12 Score=124.66 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCC---eeEEEEeecCC-CCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGP---LKAYHFEVNED-HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~---V~~v~l~~d~~-~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
....+|||+|||+.+|+++|+++|+.||. |..|.|+.+.. .++|||||+|.+.++|.+||+ |||..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45689999999999999999999999999 88999988754 468999999999999999999 99999999999999
Q ss_pred Eccc
Q 002093 648 QAVL 651 (967)
Q Consensus 648 ~a~~ 651 (967)
++.+
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8854
No 301
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=3.9e-12 Score=115.62 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=65.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|..||.+. . + ..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~---------~-~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR---------L-V-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC---------C-E-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE---------E-e-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4568999999999999999999999998421 1 2 4668889999999999999999999 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 83 l~v~~a 88 (96)
T 1fjc_A 83 VSLYYT 88 (96)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999854
No 302
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.26 E-value=5.2e-12 Score=125.59 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=69.4
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|.+||. ||+..|.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKII------MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35678999999999999999999999999643321 23444567889999999999999999999 999999999
Q ss_pred eeEEeCCCc
Q 002093 539 ILKIKRPKE 547 (967)
Q Consensus 539 ~l~V~rp~~ 547 (967)
.|+|.++..
T Consensus 110 ~l~V~~a~~ 118 (156)
T 1h2v_Z 110 IIRTDWDAG 118 (156)
T ss_dssp ECEEEEESC
T ss_pred EEEEEECCC
Confidence 999986543
No 303
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.6e-12 Score=120.27 Aligned_cols=76 Identities=29% Similarity=0.325 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|..||. .. +. .+.+. +++++|||||+|.+.++|.+||++|+..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~---v~---i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MR---VH---IEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SE---EE---EEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eE---EE---EEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 44579999999999999999999999983 22 21 23443 7899999999999999999999999999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
.|..
T Consensus 85 ~V~~ 88 (102)
T 1wez_A 85 ELFL 88 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 304
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=8.4e-12 Score=116.97 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=69.6
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
..+|||+|||..+++++|+++|+.| .|..|.|+.+. +.++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 88999998875 456999999999999999999 6999999999999988754
No 305
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.6e-11 Score=111.96 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=64.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|| .+|+++|+++|+.|| .|..+.++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G------------~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFG------------NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTS------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCC------------CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 346689999996 899999999999999 44566667899999999999999999998 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
+|.|.++.
T Consensus 78 ~l~v~~a~ 85 (97)
T 1x5p_A 78 QLKVNIAR 85 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEECC
Confidence 99998643
No 306
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.25 E-value=2.3e-12 Score=120.12 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCC---eeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGP---LKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~---V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
....+|||+|||..+|+++|+++|+.||. |..|.|+.+. +.++|||||+|.+.++|.+||. |||..|+|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45789999999999999999999999988 8899998875 4569999999999999999999 99999999999999
Q ss_pred EcccC
Q 002093 648 QAVLD 652 (967)
Q Consensus 648 ~a~~~ 652 (967)
++.+.
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98653
No 307
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=4.4e-12 Score=116.66 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=66.3
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..+.++|||+|||+.+|+++|+++|+.|+. + ..+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~------~---~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVR------A---RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSE------E---EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeE------E---EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 356789999999999999999999987642 2 133455678899999999999999999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|.|.++.
T Consensus 83 ~l~V~~a~ 90 (102)
T 2fc8_A 83 KVTLDWAK 90 (102)
T ss_dssp ECEEEECC
T ss_pred EEEEEEec
Confidence 99998643
No 308
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.25 E-value=1.5e-11 Score=113.51 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=62.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|..||. |..+.+. ++||||+|.+.++|.+||. |||..|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGK------------LERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 45689999999999999999999999994 3333332 6799999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 75 l~v~~a~ 81 (103)
T 2dgu_A 75 IEIVFAK 81 (103)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9998644
No 309
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.25 E-value=4.1e-12 Score=123.62 Aligned_cols=80 Identities=25% Similarity=0.336 Sum_probs=68.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||..+|+++|+++|+.||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~------i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY------IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE------CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4467999999999999999999999999644332 23455678899999999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 119 l~V~~a~ 125 (135)
T 2lea_A 119 LRVQMAR 125 (135)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9998643
No 310
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.25 E-value=1.7e-12 Score=127.06 Aligned_cols=122 Identities=9% Similarity=0.101 Sum_probs=71.2
Q ss_pred CcEEEEEEcCHHHHHHHHH-ccCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHH
Q 002093 511 KGQAFVEFLTAEDASAALC-CDGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSK 589 (967)
Q Consensus 511 kG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~tee 589 (967)
.|+||.+|..++-+..++. +..+ +.|...--. + +.. ..........+|||+|||..+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~----~-----g~~---------~~~~~~~~~~~lfV~nLp~~~te~ 61 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRG----S-----GDS---------EFTVQSTTGHCVHMRGLPYKATEN 61 (139)
T ss_dssp ---------------------------------------------------------------CCCCEECCSCCTTCCHH
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCC----C-----CCc---------ccCCCCCCCCEEEEeCCCCCCCHH
Confidence 3688899998887776665 3322 222221000 0 000 001123346799999999999999
Q ss_pred HHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002093 590 MVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 653 (967)
Q Consensus 590 dL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~ 653 (967)
+|+++|++|| |..|.|+.+. +.++|||||+|.+.++|.+|| .+|+..|+|+.|.|..+.+..
T Consensus 62 dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 62 DIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9999999999 6699998875 356999999999999999999 799999999999998886543
No 311
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.1e-11 Score=111.18 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 35689999996 89999999999999999999884 3689999999999999999999999999999999999976
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 87 ~~~ 89 (97)
T 1x5p_A 87 QPM 89 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 312
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.3e-12 Score=123.28 Aligned_cols=79 Identities=9% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeec--CCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d--~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
....+|||+|||..+++++|+++|+.||.|..+.++.+ .+.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35689999999999999999999999999987444444 34468999999999999999999 9999999999999998
Q ss_pred cc
Q 002093 650 VL 651 (967)
Q Consensus 650 ~~ 651 (967)
.+
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 55
No 313
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.3e-11 Score=116.31 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=68.7
Q ss_pred CCCceEEE--cCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCcc-----CCeEE
Q 002093 572 DSPHKIFI--GGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV-----GGQVL 644 (967)
Q Consensus 572 ~~~~~L~V--~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~-----~Gr~I 644 (967)
.+..+||| +||+..+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+..|||..| .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 34678999 77999999999999999999999998764 489999999999999999999999988 78999
Q ss_pred EEEEccc
Q 002093 645 TAVQAVL 651 (967)
Q Consensus 645 ~V~~a~~ 651 (967)
.|.++..
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999853
No 314
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.25 E-value=1.1e-11 Score=111.00 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=69.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
...+|||+|||..+++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 45789999999999999999999999 99999885 36999999999999999999999999999999999998543
No 315
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.25 E-value=1.8e-11 Score=117.85 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=69.7
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCE-EEEeecCcchHHHHHHHhCCCccCC--eEEEEEEccc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPC-AFIEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVL 651 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~-aFVeF~~~e~A~~Al~~LnG~~~~G--r~I~V~~a~~ 651 (967)
-.|||+||+..+|+++|+++|++||.|..|.++.. .+|| |||+|.+.++|..|++.|||..|.| +.|+|.++.+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 46889999999999999999999999999988765 4788 9999999999999999999999988 9999999976
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 316
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.5e-12 Score=119.53 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=63.2
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeEE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~V 542 (967)
..+|||+|||+.+|+++|+++|+.| .+ ..|. .+.+. .++++|||||+|.+.++|.+||.+|+..|.|+.|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v---~~v~---i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RV---DAVH---LLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 87 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CC---CEEE---ECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-Ce---eEEE---EEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 4689999999999999999999988 43 2231 22333 488999999999999999999999999999999999
Q ss_pred eCC
Q 002093 543 KRP 545 (967)
Q Consensus 543 ~rp 545 (967)
...
T Consensus 88 ~~a 90 (109)
T 2dnn_A 88 SPA 90 (109)
T ss_dssp EEC
T ss_pred EEC
Confidence 743
No 317
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.24 E-value=5.6e-12 Score=123.51 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEE--------EEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAY--------HFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV 643 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v--------~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~ 643 (967)
.+.++|||+|||..+|+++|+++|++||.|..+ .+. ..+.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 356899999999999999999999999998763 332 24567999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 002093 644 LTAVQAVLDG 653 (967)
Q Consensus 644 I~V~~a~~~~ 653 (967)
|.|.++.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999996643
No 318
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=110.47 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=59.0
Q ss_pred CCCE-EEEeCCCCcchHHH----HHHHHHHh-hhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCce
Q 002093 462 PMRR-LCVENLPLSASEKA----LMEFLNNF-LLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS 534 (967)
Q Consensus 462 ~~r~-LyVgNLp~~~Teed----L~~~F~~f-G~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~ 534 (967)
+..| |||+|||+.+++++ |.++|++| |. |+++ ++ |||||+|.+.++|..|+. |||..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~------------Vl~V-tg---G~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK------------VLSI-TG---CSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC------------EEEC-CT---TCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe------------eEEE-ec---CEEEEEECCHHHHHHHHHHhcCCc
Confidence 4456 99999999999998 55899999 44 3444 23 999999999999999999 99999
Q ss_pred eecceeEEeCCCc
Q 002093 535 FSGSILKIKRPKE 547 (967)
Q Consensus 535 l~Gr~l~V~rp~~ 547 (967)
|.|++|+|..++.
T Consensus 71 l~gr~i~v~~A~~ 83 (96)
T 2diu_A 71 VFGNRIIVSFTPK 83 (96)
T ss_dssp SSSSCCEEESSCC
T ss_pred cCCceEEEEecCC
Confidence 9999999996543
No 319
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.24 E-value=1.8e-11 Score=113.84 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=70.8
Q ss_pred cCCCceEEEcCCCc-----ccCHHHHHHHHHhcCCeeEEEEeecCC---CCCCEEEEeecCcchHHHHHHHhCCCccCCe
Q 002093 571 KDSPHKIFIGGISR-----TLSSKMVMEIVCAFGPLKAYHFEVNED---HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ 642 (967)
Q Consensus 571 ~~~~~~L~V~nLp~-----~~teedL~e~Fsk~G~V~~v~l~~d~~---~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr 642 (967)
+.+..+|+|.||.. .-++++|+++|++||.|.+|.|+.++. .++|||||+|.+.++|.+|+..|||++|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34578999999962 236899999999999999999998753 4699999999999999999999999999999
Q ss_pred EEEEEEccc
Q 002093 643 VLTAVQAVL 651 (967)
Q Consensus 643 ~I~V~~a~~ 651 (967)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 320
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.24 E-value=6.9e-12 Score=126.10 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
.+.++|||+|||+.+|+++|+++|..||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH------LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE------EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3457999999999999999999999999643321 22444578889999999999999999999 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.+.
T Consensus 144 l~V~~a 149 (165)
T 1rk8_A 144 IQVDWC 149 (165)
T ss_dssp CEEEES
T ss_pred EEEEEe
Confidence 999853
No 321
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.23 E-value=1.3e-11 Score=125.79 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 650 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~ 650 (967)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 346899999999999999999999999999999998875 4468999999999999999999999999999999999996
Q ss_pred cCC
Q 002093 651 LDG 653 (967)
Q Consensus 651 ~~~ 653 (967)
+..
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 543
No 322
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=5.9e-12 Score=120.56 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=66.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcC-cccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSG-VQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g-~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
....+|||+|||+++|+++|+++|+.||.+.+ +..|. .+.+ .+++++|||||+|.+.++|.+||.+|+..|.|+.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~---i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL---FVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEE---EEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEE---EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE
Confidence 45679999999999999999999999996431 22231 2333 5789999999999999999999999999999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|.|..
T Consensus 97 i~V~~ 101 (123)
T 2dha_A 97 IELFR 101 (123)
T ss_dssp ECCEE
T ss_pred EEEEE
Confidence 98874
No 323
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.23 E-value=6.3e-12 Score=118.77 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=66.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeE-----EEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV-----LTAV 647 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~-----I~V~ 647 (967)
..++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|||..|+|+. |.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4589999999999999999999999999999999765 99999999999999999999999999998 6776
Q ss_pred EcccC
Q 002093 648 QAVLD 652 (967)
Q Consensus 648 ~a~~~ 652 (967)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 66553
No 324
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.23 E-value=9.8e-12 Score=113.31 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=61.8
Q ss_pred CCCCCEEEEeCCCC-cchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 460 NRPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 460 ~~~~r~LyVgNLp~-~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
..+.++|||+|||+ .+|+++|+++|+.||. |..+.+ ++|||||+|.+.++|..|+. |||..|.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCC------------CCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 35678999999998 9999999999999994 233333 38999999999999999999 99999999
Q ss_pred ceeEEeCC
Q 002093 538 SILKIKRP 545 (967)
Q Consensus 538 r~l~V~rp 545 (967)
++|.|.+.
T Consensus 73 ~~l~V~~a 80 (96)
T 2kvi_A 73 KKLILEVS 80 (96)
T ss_dssp TTBCEEEE
T ss_pred cEEEEEEc
Confidence 99999853
No 325
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.23 E-value=1.6e-11 Score=110.67 Aligned_cols=76 Identities=17% Similarity=0.352 Sum_probs=63.5
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCc--cCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLK--VGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~--~~Gr~I~V~~ 648 (967)
..+.++|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 345789999999999999999999999999999999886 89999999999999873 56654 5699999999
Q ss_pred cccCC
Q 002093 649 AVLDG 653 (967)
Q Consensus 649 a~~~~ 653 (967)
+.+..
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87643
No 326
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=9.8e-12 Score=116.56 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=65.3
Q ss_pred CCCCEEEEeCCCCcchHHHHH---HHHHHhhhhcCcccccCCcCeeeeee---cCCCcEEEEEEcCHHHHHHHHH-ccCc
Q 002093 461 RPMRRLCVENLPLSASEKALM---EFLNNFLLSSGVQHVHGSLPCIGCVI---QREKGQAFVEFLTAEDASAALC-CDGC 533 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~---~~F~~fG~~~g~~~v~~~~~v~~~~~---~~skG~aFVeF~~~e~A~~Al~-lng~ 533 (967)
...++|||+|||+.+|+++|+ ++|..||.+..+.. +.+..+ +.++|||||+|.+.++|..||. |||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i------~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI------NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE------ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEE------ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 446799999999999999999 99999996444321 122222 3556999999999999999999 9999
Q ss_pred eeecceeEEeCCC
Q 002093 534 SFSGSILKIKRPK 546 (967)
Q Consensus 534 ~l~Gr~l~V~rp~ 546 (967)
.|.|++|+|.++.
T Consensus 87 ~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 87 VVDGRTLKASLGT 99 (111)
T ss_dssp EETTEEEEEESCC
T ss_pred EECCEEEEEEecc
Confidence 9999999999644
No 327
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.9e-11 Score=115.08 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=61.6
Q ss_pred CCCCEEEE--eCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee--
Q 002093 461 RPMRRLCV--ENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF-- 535 (967)
Q Consensus 461 ~~~r~LyV--gNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l-- 535 (967)
.+.++||| |||+.++|+++|+++|++||. |.++.+..++|||||+|.+.++|..|++ |||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~------------v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSC------------EEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 45679999 779999999999999999994 3344444568999999999999999999 999988
Q ss_pred ---ecceeEEeC
Q 002093 536 ---SGSILKIKR 544 (967)
Q Consensus 536 ---~Gr~l~V~r 544 (967)
.|++|.|..
T Consensus 91 ~lg~g~~l~v~~ 102 (114)
T 2cq2_A 91 DLGQKITLYLNF 102 (114)
T ss_dssp TTSCEEECEEEE
T ss_pred ccCCCcEEEEEe
Confidence 688888874
No 328
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.22 E-value=1.7e-11 Score=114.55 Aligned_cols=71 Identities=24% Similarity=0.407 Sum_probs=62.4
Q ss_pred CCCEEEEeCCCCc-chHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 462 PMRRLCVENLPLS-ASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 462 ~~r~LyVgNLp~~-~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
..++|||+|||+. +|+++|+++|..||. |..+.+ ++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGR------------VAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSC------------CSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4579999999999 999999999999994 233333 68999999999999999998 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|+|.+..
T Consensus 92 l~V~~a~ 98 (110)
T 1wf1_A 92 LDINMAG 98 (110)
T ss_dssp CCEEESC
T ss_pred EEEEECC
Confidence 9998643
No 329
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.22 E-value=1.7e-11 Score=109.14 Aligned_cols=71 Identities=24% Similarity=0.462 Sum_probs=66.2
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAF----G-------PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG 641 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~----G-------~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~G 641 (967)
...+|||+|||..+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 35799999999999999999999999 8 8999988764 899999999999999999 999999999
Q ss_pred eEEEEEE
Q 002093 642 QVLTAVQ 648 (967)
Q Consensus 642 r~I~V~~ 648 (967)
+.|.|.+
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999975
No 330
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.22 E-value=1.7e-11 Score=112.76 Aligned_cols=78 Identities=15% Similarity=0.384 Sum_probs=71.6
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
.++|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+. +|..|+|+.|.|.++.+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 5799999999999999999999999999999999885 3358999999999999999998 999999999999999764
Q ss_pred C
Q 002093 653 G 653 (967)
Q Consensus 653 ~ 653 (967)
.
T Consensus 87 ~ 87 (102)
T 2xs2_A 87 Q 87 (102)
T ss_dssp C
T ss_pred c
Confidence 4
No 331
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.22 E-value=2.6e-11 Score=121.19 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=70.3
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCC--eEEEEEEccc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVL 651 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~G--r~I~V~~a~~ 651 (967)
..+|||+||+..+|+++|+++|++||.|..|.|.... ++|||||+|.+.++|..|+..|||..|.| +.|+|.++.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3568999999999999999999999999999987542 57899999999999999999999999955 9999999977
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 332
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=2.3e-11 Score=111.84 Aligned_cols=81 Identities=12% Similarity=0.187 Sum_probs=70.4
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
....++|||+|||..+++++|+++|+.|+ .|.++.+. +.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999999999999999874 56666664 34589999999999999999999999999999999999
Q ss_pred cccCCC
Q 002093 649 AVLDGS 654 (967)
Q Consensus 649 a~~~~~ 654 (967)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 977543
No 333
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.21 E-value=4.7e-12 Score=146.66 Aligned_cols=163 Identities=10% Similarity=0.046 Sum_probs=102.4
Q ss_pred HHHHHHhcCCeeEEEEe----ecCCCC---CCEE--EEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCC
Q 002093 591 VMEIVCAFGPLKAYHFE----VNEDHE---EPCA--FIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN 661 (967)
Q Consensus 591 L~e~Fsk~G~V~~v~l~----~d~~~s---kG~a--FVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~~~~~~~~ 661 (967)
|..+|.++|+|..|..+ .+.... .|++ |+.|.....+..++..++.....++............. ...
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~---~~~ 85 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEV---ETE 85 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 67899999999876322 222122 3344 78887776665555444332221110000000000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecC-CCCCcceeEEEEeC
Q 002093 662 PPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNISTIQACEGN 740 (967)
Q Consensus 662 ~~~~~i~~~~~~~~~~ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~-~~g~~~G~gFVeF~ 740 (967)
... ..+.........+.++|+|.||.... ++ ++|+++|++||.|+.|.|+.+ .+|..+|||||+|.
T Consensus 86 ~~~-~~p~~~~~~~~~~~~~lfV~nL~~~~-----te-------~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~ 152 (437)
T 3pgw_S 86 LKM-WDPHNDPNAQGDAFKTLFVARVNYDT-----TE-------SKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYE 152 (437)
T ss_pred hhh-cCCcccccccCCCCCEEEEeCCCCCC-----CH-------HHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeec
Confidence 000 00001111223567899999996532 32 578999999999999999987 47888999999999
Q ss_pred CHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 741 ENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 741 ~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
+.++|.+||..|||..|.|+.|.|.++..
T Consensus 153 ~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 153 HERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred cHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 99999999999999999999999988754
No 334
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=109.83 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|..||.+..+ +.+..++. ||||+|.+.++|..||.|||..|.|+.|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--------~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l 74 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--------VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRL 74 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--------EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--------EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEE
Confidence 456799999999999999999999999953321 22333333 9999999999999999999999999999
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
.|...
T Consensus 75 ~V~~a 79 (94)
T 2e5g_A 75 RVRPR 79 (94)
T ss_dssp CCBCS
T ss_pred EEEEC
Confidence 99854
No 335
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.21 E-value=6.5e-12 Score=133.28 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=67.5
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhh--hhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFL--LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG--~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
..++|||+|||+.+|+++|+++|..|| .+..+ .++.+..++.++|||||+|.+.++|.+||. |||..|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v------~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEI------KFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEE------EEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEE------EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567999999999999999999999999 53332 134566789999999999999999999999 999999999
Q ss_pred eeEEeCCC
Q 002093 539 ILKIKRPK 546 (967)
Q Consensus 539 ~l~V~rp~ 546 (967)
.|+|.++.
T Consensus 141 ~l~V~~a~ 148 (229)
T 3q2s_C 141 NPVVTPVN 148 (229)
T ss_dssp CCEEEECC
T ss_pred EeEEEECC
Confidence 99998543
No 336
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=9.3e-12 Score=119.20 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCe----eEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPL----KAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 646 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V----~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V 646 (967)
....+|||+|||+.+|+++|+++|++||.| ..|.|+.+. +.++|||||+|.+.++|.+||.. ||..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 346899999999999999999999999986 578888874 34689999999999999999985 999999999999
Q ss_pred EEccc
Q 002093 647 VQAVL 651 (967)
Q Consensus 647 ~~a~~ 651 (967)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 337
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=4.3e-11 Score=114.60 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=67.5
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCE-EEEeecCcchHHHHHHHhCCCccCC--eEEEEEEccc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPC-AFIEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVL 651 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~-aFVeF~~~e~A~~Al~~LnG~~~~G--r~I~V~~a~~ 651 (967)
-.|||+||+..+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.|.+|.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 34789999999999999999999999999998653 396 9999999999999999999999977 6999999976
Q ss_pred CC
Q 002093 652 DG 653 (967)
Q Consensus 652 ~~ 653 (967)
..
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 338
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.4e-11 Score=115.74 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=63.9
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCcee---
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF--- 535 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l--- 535 (967)
....++|||+|||+.+|+++|+++|..||.+..+. .+.+. ++.++|||||+|.+.++|..||. |||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR------ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEE------EEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 34568999999999999999999999999644321 22333 78889999999999999999999 999999
Q ss_pred -----ecceeEEeC
Q 002093 536 -----SGSILKIKR 544 (967)
Q Consensus 536 -----~Gr~l~V~r 544 (967)
.+++|.|.+
T Consensus 95 ~~~~~~~~~l~v~~ 108 (114)
T 1x5o_A 95 PGVSAPTEPLLCKF 108 (114)
T ss_dssp TTSCCCSSCBEEEE
T ss_pred ccccCCCCceeEEc
Confidence 466677763
No 339
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.5e-11 Score=108.41 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=64.3
Q ss_pred ceEEEcCCCcccCHHH----HHHHHHhc-CCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 575 HKIFIGGISRTLSSKM----VMEIVCAF-GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 575 ~~L~V~nLp~~~teed----L~e~Fsk~-G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
+.|||+|||..+++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++.|+|..|.|++|+|.+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 3499999999999987 55899999 5998881 299999999999999999999999999999999999
Q ss_pred ccCCC
Q 002093 650 VLDGS 654 (967)
Q Consensus 650 ~~~~~ 654 (967)
..+..
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 76554
No 340
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.20 E-value=8.2e-12 Score=120.00 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=63.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+.+|+++|+++|+.|+ +.. ..|. .+.+.. ++++|||||+|.+.++|.+||.+++..|.|+.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~-~~v~---i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVP-NGIT---LPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEE-EEEE---CCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-cee-eEEE---EEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 4467899999999999999999999985 220 0221 234444 899999999999999999999988899999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
.|..
T Consensus 114 ~V~~ 117 (126)
T 2hgm_A 114 EVFK 117 (126)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 9974
No 341
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-12 Score=122.70 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=69.7
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcc--cccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQ--HVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~--~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
..+.++|||+|||..+|+++|+++|+.||.+.... ..+....+.+..++.++|||||+|.+.++|..|+. |||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35678999999999999999999999999754310 00001133455678899999999999999999999 9999999
Q ss_pred cceeEEeCCC
Q 002093 537 GSILKIKRPK 546 (967)
Q Consensus 537 Gr~l~V~rp~ 546 (967)
|++|.|.++.
T Consensus 84 g~~l~V~~a~ 93 (116)
T 2lcw_A 84 GNPIKVSFAT 93 (116)
Confidence 9999998643
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.19 E-value=1.4e-11 Score=110.42 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=61.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|.+| .+.. + .+..++|||||+|.+.++|..|+. |||..|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~---~---------~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKY---C---------YVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCC---E---------EEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE---E---------EEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 456799999999999999999999887 4222 2 112789999999999999999999 9999999999
Q ss_pred eEEeC
Q 002093 540 LKIKR 544 (967)
Q Consensus 540 l~V~r 544 (967)
|+|.+
T Consensus 70 l~V~~ 74 (88)
T 1wg1_A 70 LIVQL 74 (88)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 343
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-12 Score=122.35 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=74.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeE--------EEEeecC--CCCCCEEEEeecCcchHHHHHHHhCCCccCCe
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKA--------YHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ 642 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~--------v~l~~d~--~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr 642 (967)
..++|||+|||..+++++|+++|++||.|.. |.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4678999999999999999999999999998 8888774 35689999999999999999999999999999
Q ss_pred EEEEEEcccCCC
Q 002093 643 VLTAVQAVLDGS 654 (967)
Q Consensus 643 ~I~V~~a~~~~~ 654 (967)
.|.|.++.+...
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999976544
No 344
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.17 E-value=2.6e-11 Score=116.56 Aligned_cols=78 Identities=10% Similarity=0.224 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCee--EEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEE
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLK--AYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 648 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~--~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~ 648 (967)
....+|||+|||+.+|+++|+++|+.| .|. .|.|+.+. +.++|||||+|.+.++|.+||. +++..|+|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 446889999999999999999999999 566 89998875 4569999999999999999998 588999999999988
Q ss_pred ccc
Q 002093 649 AVL 651 (967)
Q Consensus 649 a~~ 651 (967)
+.+
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 345
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.17 E-value=5.2e-11 Score=113.23 Aligned_cols=76 Identities=9% Similarity=0.106 Sum_probs=67.3
Q ss_pred CceEEEcCC----CcccCHHHHHHHHHhcCCeeEEEEeecCCC--CCCEEEEeecC----cch----HHHHHH--HhCCC
Q 002093 574 PHKIFIGGI----SRTLSSKMVMEIVCAFGPLKAYHFEVNEDH--EEPCAFIEYVD----QLV----TPKAIA--GLNGL 637 (967)
Q Consensus 574 ~~~L~V~nL----p~~~teedL~e~Fsk~G~V~~v~l~~d~~~--skG~aFVeF~~----~e~----A~~Al~--~LnG~ 637 (967)
+..|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.+ ++|||||+|.+ ++. |.+|+. .|+|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 999999999999999999999999999765 59999999997 544 788888 78999
Q ss_pred ccCCeEEEEEEc
Q 002093 638 KVGGQVLTAVQA 649 (967)
Q Consensus 638 ~~~Gr~I~V~~a 649 (967)
.|+|+.|.|..-
T Consensus 82 ~I~Gr~irV~ln 93 (136)
T 2j8a_A 82 FIMGFKFEVILN 93 (136)
T ss_dssp EETTEEEEEEEC
T ss_pred eecCcEEEEEEC
Confidence 999999999765
No 346
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.17 E-value=5.4e-12 Score=116.13 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=64.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
..++|||+|||+.+|+++|+++|+.||.+..+. .+.+. ++.++|||||+|.+.++|..|+. ++..|.|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVK------IITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEE
Confidence 457999999999999999999999999644331 22333 78889999999999999999999 99999999999
Q ss_pred EeC
Q 002093 542 IKR 544 (967)
Q Consensus 542 V~r 544 (967)
|.+
T Consensus 80 v~~ 82 (102)
T 2xs2_A 80 LGP 82 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 347
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.17 E-value=3.8e-11 Score=122.30 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=66.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|..||.+..+. .+.+. ++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA------VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEE------ECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 3457999999999999999999999999644331 11233 68899999999999999999999 9999999999
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|.|.++
T Consensus 159 l~V~~a 164 (177)
T 2f3j_A 159 MDIQLV 164 (177)
T ss_dssp CEEEEE
T ss_pred EEEEEe
Confidence 999854
No 348
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.16 E-value=4.6e-11 Score=113.98 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 572 DSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 572 ~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
...++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 35689999996 69999999999999999999986 3699999999999999999999999999999999999976
Q ss_pred CCC
Q 002093 652 DGS 654 (967)
Q Consensus 652 ~~~ 654 (967)
...
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 349
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.16 E-value=2.9e-11 Score=114.16 Aligned_cols=69 Identities=26% Similarity=0.290 Sum_probs=57.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|..||. |..+.+... |||||+|.+.++|..||. |||..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSC------------EEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34579999999999999999999999994 334444333 999999999999999999 9999999998
Q ss_pred eEE
Q 002093 540 LKI 542 (967)
Q Consensus 540 l~V 542 (967)
|+|
T Consensus 81 ~~~ 83 (115)
T 3beg_B 81 GET 83 (115)
T ss_dssp SCC
T ss_pred eee
Confidence 443
No 350
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=7.8e-11 Score=106.97 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|||+.+|+++|+++|..||.+..+. .+......|.|||+|.+.++|..|+. |||..|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~---------~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCE---------QVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEE---------EECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEE---------EeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3467999999999999999999999999522210 11223345569999999999999999 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.++.
T Consensus 84 l~V~~a~ 90 (96)
T 2e44_A 84 LKVAYIP 90 (96)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9998543
No 351
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.15 E-value=6.9e-12 Score=122.68 Aligned_cols=76 Identities=28% Similarity=0.338 Sum_probs=64.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeeccee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l 540 (967)
...++|||+|||+++|+++|+++|++|| +.. |. ++.+.. ++++|||||+|.+.++|.+||.+|+..|.|+.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~---v~---i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVR---VH---IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 115 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE---EE---CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE---EE---EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEE
Confidence 4567999999999999999999999998 333 21 234443 899999999999999999999999999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
.|..
T Consensus 116 ~V~~ 119 (139)
T 2hgn_A 116 ELFL 119 (139)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 9974
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=3.7e-11 Score=107.49 Aligned_cols=77 Identities=13% Similarity=0.261 Sum_probs=65.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
..++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+. .+..+.|+.|.|.++.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCC
Confidence 4689999999999999999999999999999999876 79999999999999975422 134559999999998765
Q ss_pred CC
Q 002093 653 GS 654 (967)
Q Consensus 653 ~~ 654 (967)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.13 E-value=6.7e-11 Score=112.87 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=62.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~ 539 (967)
...++|||+|| .+|+++|+++|+.||. |..+.+..++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~------------I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCC------------CSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 45789999996 6999999999999994 3444556889999999999999999998 9999999999
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.+..
T Consensus 103 l~V~~a~ 109 (121)
T 2bz2_A 103 LKVNIAR 109 (121)
T ss_dssp CEEEECC
T ss_pred EEEEEeC
Confidence 9998543
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.3e-11 Score=112.71 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee---cCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI---QREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~---~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
...++|||+|||+.+|+++|+++|+.||.+. +. .+.+..+ +.++|||||+|.+.++|..||. |++ +.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~------~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~ 76 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD------WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED 76 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE------CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE------EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC
Confidence 4578999999999999999999999999644 21 2233344 7899999999999999999999 732 55
Q ss_pred cceeEEe
Q 002093 537 GSILKIK 543 (967)
Q Consensus 537 Gr~l~V~ 543 (967)
|+.|.+.
T Consensus 77 G~~~~~~ 83 (114)
T 2dnl_A 77 GKLYLCV 83 (114)
T ss_dssp TEEEEEE
T ss_pred CcEEEec
Confidence 6655554
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=109.06 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=63.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecC-----CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-----DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~-----~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
..++|||+|||..+++++|+++|++||.|. +.++.+. +.++|||||+|.+.++|.+|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 468999999999999999999999999999 7777664 3569999999999999999999984 3677777665
Q ss_pred Ec
Q 002093 648 QA 649 (967)
Q Consensus 648 ~a 649 (967)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 356
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.11 E-value=1.1e-10 Score=116.62 Aligned_cols=74 Identities=22% Similarity=0.237 Sum_probs=61.4
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeec--ce
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG--SI 539 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~G--r~ 539 (967)
-.+|||+||++.+|+++|+++|+.||.+..+ .+....++|||||+|.+.++|..|+. |||..|.| +.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V----------~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~ 115 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKI----------ITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 115 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEE----------EEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEE----------EEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE
Confidence 3479999999999999999999999953332 12234468899999999999999999 99999966 99
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|+|.+.+
T Consensus 116 L~V~~Ak 122 (164)
T 1sjr_A 116 LRIDFSK 122 (164)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 9998543
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.10 E-value=1.3e-10 Score=107.98 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCceEEEcCC--Cccc--------CHHHHHHHHHhcCCeeEEEEeecCC----CCCCEEEEeecCcchHHHHHHHhCCCc
Q 002093 573 SPHKIFIGGI--SRTL--------SSKMVMEIVCAFGPLKAYHFEVNED----HEEPCAFIEYVDQLVTPKAIAGLNGLK 638 (967)
Q Consensus 573 ~~~~L~V~nL--p~~~--------teedL~e~Fsk~G~V~~v~l~~d~~----~skG~aFVeF~~~e~A~~Al~~LnG~~ 638 (967)
+...|+|.|+ |..+ .+++|+++|++||.|.+|.|+++.. .++|+|||+|.+.++|.+|+..|||++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567888887 3333 3479999999999999999988753 368999999999999999999999999
Q ss_pred cCCeEEEEEEccc
Q 002093 639 VGGQVLTAVQAVL 651 (967)
Q Consensus 639 ~~Gr~I~V~~a~~ 651 (967)
|+|+.|.|.++.+
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999854
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.10 E-value=3.4e-10 Score=116.84 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=89.4
Q ss_pred CHHHHHHHHH-c--cCceeecceeEEeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccCHHHHHHHHH
Q 002093 520 TAEDASAALC-C--DGCSFSGSILKIKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLSSKMVMEIVC 596 (967)
Q Consensus 520 ~~e~A~~Al~-l--ng~~l~Gr~l~V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~teedL~e~Fs 596 (967)
+.+.+..|+. . ..+.+.+....|.+......+ ..... .......++|||+|||..+++++|+++|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p--~~~~~---------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 131 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLP--EVTDE---------YKNDVKNRSVYIKGFPTDATLDDIKEWLE 131 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCC--CCCHH---------HHHHHHHTEEEEECCCTTCCHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCc--ccchh---------hhhccccCEEEecCCCCcCCHHHHHHHHh
Confidence 6677888888 6 566777777777753111000 00000 00011247899999999999999999999
Q ss_pred hcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEccc
Q 002093 597 AFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 651 (967)
Q Consensus 597 k~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~ 651 (967)
+||.|..|+|+++. +.++|||||+|.+.++|.+|+..+ +..|+|+.|.|.++..
T Consensus 132 ~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 132 DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 99999999998874 345899999999999999999855 5699999999998744
No 359
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.09 E-value=1.5e-10 Score=111.41 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=59.5
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcE-EEEEEcCHHHHHHHHH-ccCceeec--ce
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQ-AFVEFLTAEDASAALC-CDGCSFSG--SI 539 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~-aFVeF~~~e~A~~Al~-lng~~l~G--r~ 539 (967)
.+|||+||++.+|+++|.++|+.||.+..+. |. ...+|| |||+|.+.++|..|+. |||..|.| +.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~-------i~----~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKII-------TF----TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEE-------EE----EETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEE-------EE----cCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 3789999999999999999999999633321 11 234788 9999999999999999 99999998 88
Q ss_pred eEEeCC
Q 002093 540 LKIKRP 545 (967)
Q Consensus 540 l~V~rp 545 (967)
|+|..+
T Consensus 98 LrI~~a 103 (130)
T 3zzy_A 98 LRIDFS 103 (130)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999854
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.7e-10 Score=106.98 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=68.9
Q ss_pred cCCCceEEEcCCCccc-----------CHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCcc
Q 002093 571 KDSPHKIFIGGISRTL-----------SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV 639 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~-----------teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~ 639 (967)
+.+..+|+|.||.... ++++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..|||..|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4457899999994332 25899999999999999965 443 3799999999999999999999999999
Q ss_pred CCeEEEEEEcccCC
Q 002093 640 GGQVLTAVQAVLDG 653 (967)
Q Consensus 640 ~Gr~I~V~~a~~~~ 653 (967)
+|+.|.|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999997643
No 361
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=2e-10 Score=109.99 Aligned_cols=69 Identities=25% Similarity=0.229 Sum_probs=57.0
Q ss_pred EEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcE-EEEEEcCHHHHHHHHH-ccCceeec--cee
Q 002093 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQ-AFVEFLTAEDASAALC-CDGCSFSG--SIL 540 (967)
Q Consensus 465 ~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~-aFVeF~~~e~A~~Al~-lng~~l~G--r~l 540 (967)
.|||+|||+.+|+++|.++|++||.+.. +.+....|| |||+|.+.++|..|+. |||..|.| ++|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~------------v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQR------------IVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEE------------EEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEE------------EEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 5789999999999999999999995333 211111486 9999999999999999 99999988 689
Q ss_pred EEeCC
Q 002093 541 KIKRP 545 (967)
Q Consensus 541 ~V~rp 545 (967)
+|..+
T Consensus 95 ~V~~A 99 (124)
T 2e5i_A 95 KIEYA 99 (124)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 99853
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.08 E-value=1.3e-10 Score=123.46 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=69.9
Q ss_pred CCceEEEcCCCccc---------CHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCcc----
Q 002093 573 SPHKIFIGGISRTL---------SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV---- 639 (967)
Q Consensus 573 ~~~~L~V~nLp~~~---------teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~---- 639 (967)
...+|||+||+..+ ++++|+++|++||.|..|.|+. ++|||||+|.+.++|..|+..|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 46899999999998 7999999999999999999986 489999999999999999999999999
Q ss_pred --------CCeEEEEEEcccCCC
Q 002093 640 --------GGQVLTAVQAVLDGS 654 (967)
Q Consensus 640 --------~Gr~I~V~~a~~~~~ 654 (967)
.|+.|.|.+|...++
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp STTGGGGGGSCCCEEEECC----
T ss_pred cccccccCCCCEEEEEEccCCCC
Confidence 899999999975443
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.07 E-value=2e-10 Score=121.95 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCCCCEEEEeCCCCcc---------hHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-
Q 002093 460 NRPMRRLCVENLPLSA---------SEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC- 529 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~---------TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~- 529 (967)
....++|||||||..+ |+++|+++|++||. |.++.+..++|||||+|.+.++|..|++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~------------I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD------------IDRIRYVESKNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC------------EEEEEEECCCCEEEEEeCCHHHHHHHHHH
Confidence 4567899999999998 89999999999994 4455555689999999999999999999
Q ss_pred ccCcee------------ecceeEEeCCCc
Q 002093 530 CDGCSF------------SGSILKIKRPKE 547 (967)
Q Consensus 530 lng~~l------------~Gr~l~V~rp~~ 547 (967)
|+|..| .|+.|.|.+++.
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccC
Confidence 999999 899999997654
No 364
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.06 E-value=1.1e-10 Score=120.41 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
..++|||+|||+.+|+++|+++|+.||.+..+. |.....+.++|||||+|.+.++|..|+.+.+..|.|++|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-------i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~ 180 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-------MRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL 180 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEE-------EEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEE-------EEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 357999999999999999999999999644331 1222347789999999999999999999556699999999
Q ss_pred EeCCCcccc
Q 002093 542 IKRPKEFVE 550 (967)
Q Consensus 542 V~rp~~~~~ 550 (967)
|.+..+|..
T Consensus 181 V~~~~~y~~ 189 (193)
T 2voo_A 181 ILFKDDYFA 189 (193)
T ss_dssp EEETTTC--
T ss_pred EEEhHHHHH
Confidence 998777753
No 365
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.06 E-value=3.5e-10 Score=101.79 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=53.9
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHHccCcee--e
Q 002093 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALCCDGCSF--S 536 (967)
Q Consensus 460 ~~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~lng~~l--~ 536 (967)
..+..+|||+|||+++|+++|+++|+.||.+. ++.+ ..++|||||+|.+.++|.+ ++|..+ .
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~------------~v~i~~~srGfaFV~F~~~~~A~~---~~~~~~~~~ 72 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVV------------DVFIPKPFRAFAFVTFADDKVAQS---LCGEDLIIK 72 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEE------------EEECCSSCCSEEEEEESCHHHHHH---HTTCEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEE------------EEEEeeCCCCEEEEEECCHHHHHH---HcCCCcccC
Confidence 35567999999999999999999999999533 2222 1379999999999999983 455444 5
Q ss_pred cceeEEeC
Q 002093 537 GSILKIKR 544 (967)
Q Consensus 537 Gr~l~V~r 544 (967)
|+.|.|.+
T Consensus 73 g~~v~v~~ 80 (89)
T 3d2w_A 73 GISVHISN 80 (89)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 88888875
No 366
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=1.8e-10 Score=103.00 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeee-cCCCcEEEEEEcCHHHHHHHHHccCceeecce
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~-~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~ 539 (967)
...++|||+|||..+|+++|+++|+.||.+.. +.+ ..++|||||+|.+.++|.+|+.. .+.+.|+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~------------v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~ 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMD------------VFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGIS 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCE------------EECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE------------EEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEE
Confidence 45689999999999999999999999995332 222 23799999999999999765333 35568899
Q ss_pred eEEeCCC
Q 002093 540 LKIKRPK 546 (967)
Q Consensus 540 l~V~rp~ 546 (967)
|.|.++.
T Consensus 70 l~v~~a~ 76 (88)
T 1wf0_A 70 VHISNAE 76 (88)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9998543
No 367
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1e-10 Score=111.15 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=63.3
Q ss_pred CEEEEeCC----CCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcC----HHH----HHHHHH--
Q 002093 464 RRLCVENL----PLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLT----AED----ASAALC-- 529 (967)
Q Consensus 464 r~LyVgNL----p~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~----~e~----A~~Al~-- 529 (967)
..|||+|| |+.+++.+|+++|+.||.+..+. .+.+..||.++|||||+|.+ +.+ |..|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~------li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~ 76 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFE------AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKH 76 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEE------EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 58999999 99999999999999999755442 55888999999999999996 433 788876
Q ss_pred -ccCceeecceeEEe
Q 002093 530 -CDGCSFSGSILKIK 543 (967)
Q Consensus 530 -lng~~l~Gr~l~V~ 543 (967)
|||..|.|++|+|.
T Consensus 77 ~lng~~I~Gr~irV~ 91 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVI 91 (136)
T ss_dssp TTTCEEETTEEEEEE
T ss_pred hhcCCeecCcEEEEE
Confidence 79999999999998
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.96 E-value=2.7e-10 Score=105.76 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=61.1
Q ss_pred EcCCCcccCHHHHHHHH------------HhcCCeeEEEEeecC-CCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEE
Q 002093 579 IGGISRTLSSKMVMEIV------------CAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 645 (967)
Q Consensus 579 V~nLp~~~teedL~e~F------------sk~G~V~~v~l~~d~-~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~ 645 (967)
+.||+..+++++|++.| ++||.|..|.|+++. +.++|||||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777777666555 999999999998875 34699999999999999999999999999999999
Q ss_pred EEEc
Q 002093 646 AVQA 649 (967)
Q Consensus 646 V~~a 649 (967)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9876
No 369
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=2e-09 Score=113.10 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=72.7
Q ss_pred CCeEEEccccCCCCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEEecCC-----CCCcceeEEEEeCCHHHHHHHHHHh
Q 002093 678 PTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-----DSNISTIQACEGNENTASAGVGQNL 752 (967)
Q Consensus 678 ps~vl~L~Nl~~~~~L~~i~~~~~eei~eDIr~~f~kFG~V~~V~I~r~~-----~g~~~G~gFVeF~~~e~A~~Ai~~L 752 (967)
++.++.|.|++.+.++. +++.+||+++|++||.|.+|.|+++. ++...|++||+|.+.++|.+|++.|
T Consensus 123 ~s~v~~l~n~v~~~e~~-------~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l 195 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDID-------DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 195 (222)
T ss_dssp BCSEEEEESSCCGGGCC-------TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhcCCCHHHHH-------HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh
Confidence 46789999999988763 24557899999999999999998764 3478899999999999999999999
Q ss_pred CCCccCCCcceeEEee
Q 002093 753 TNDETNEKGERLEEVT 768 (967)
Q Consensus 753 nG~~~~~r~~~v~~~~ 768 (967)
||+.|+||.+.+....
T Consensus 196 ~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 196 NGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred cCceECCeEEEEEEcC
Confidence 9999999999887653
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.1e-08 Score=92.30 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=57.8
Q ss_pred cccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002093 584 RTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 654 (967)
Q Consensus 584 ~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~~~ 654 (967)
..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|+..++| +.|++|.|.++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 4689999999999999999999874 4799999999999999999998655 6799999999866543
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.78 E-value=9.8e-09 Score=114.59 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=59.2
Q ss_pred CCCCCEEEEeC--CCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 460 NRPMRRLCVEN--LPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 460 ~~~~r~LyVgN--Lp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
+.+.++||||| |++.+||++|+++|++||. |..+.+..+||||||+|.+.++|.+|++ |||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~------------V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC------------EEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 46678999999 5789999999999999995 3344444579999999999999999999 9998884
Q ss_pred ---cc--eeEEe
Q 002093 537 ---GS--ILKIK 543 (967)
Q Consensus 537 ---Gr--~l~V~ 543 (967)
|+ +|.|.
T Consensus 83 ~~~g~~~~ly~~ 94 (345)
T 3tht_A 83 DDLGQKITLYLN 94 (345)
T ss_dssp CTTSCEEECEEE
T ss_pred cccCCceEEEEE
Confidence 44 45555
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.78 E-value=7.6e-09 Score=115.51 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=64.5
Q ss_pred cCCCceEEEcC--CCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCcc---CCe--E
Q 002093 571 KDSPHKIFIGG--ISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV---GGQ--V 643 (967)
Q Consensus 571 ~~~~~~L~V~n--Lp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~---~Gr--~ 643 (967)
..+..+|||+| |+..+|+++|+++|++||.|..|.+.. ++|||||+|.+.++|.+|++.|||..+ .|+ +
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 34568999999 578999999999999999999987753 689999999999999999999999877 355 5
Q ss_pred EEEEEc
Q 002093 644 LTAVQA 649 (967)
Q Consensus 644 I~V~~a 649 (967)
|.|.++
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 666666
No 373
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=4.3e-09 Score=110.62 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=42.3
Q ss_pred cceEEEEecCHHHHHHHHHHhhccccCCceEEEEecChhhHHhh
Q 002093 921 PGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRAR 964 (967)
Q Consensus 921 ~G~VyVkF~s~eaA~~A~~aLhGR~FagR~I~A~yv~~~~Y~~~ 964 (967)
.|+|||+|.+.++|.+|+++||||||+||+|.|.|++.+.|++.
T Consensus 175 ~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS 218 (222)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHTT
T ss_pred eeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhhc
Confidence 48999999999999999999999999999999999999999875
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.4e-07 Score=86.82 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 706 EDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 706 eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
++|+++|++||.|+.|.|+. ..+|||||+|.+.++|..|+..++| +.++.++|..+..
T Consensus 32 ~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 32 DVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp HHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred HHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 67999999999999999983 5789999999999999999999766 5789998877654
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=8.5e-07 Score=79.24 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEeec
Q 002093 703 EVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 769 (967)
Q Consensus 703 ei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~~~ 769 (967)
++..+|.+.|.+||.|..|+|+.+. +||+|.+.++|.+|++ |||..++|+.++|+....
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 5567799999999999999999853 7999999999999998 999999999999988653
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=5.8e-07 Score=80.30 Aligned_cols=57 Identities=12% Similarity=0.269 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEcccC
Q 002093 589 KMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 652 (967)
Q Consensus 589 edL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a~~~ 652 (967)
.+|.+.|++||.|..++++.+ .+||+|.+.++|.+|+. |||..++|+.|+|..+.|+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecC------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 578999999999999999876 38999999999999998 9999999999999998764
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=6.6e-07 Score=84.81 Aligned_cols=76 Identities=11% Similarity=0.026 Sum_probs=64.8
Q ss_pred ccCCCceEEEcCCCcc-cCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecC-cchHHHHHHHhC--CCccCCeEEE
Q 002093 570 VKDSPHKIFIGGISRT-LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVD-QLVTPKAIAGLN--GLKVGGQVLT 645 (967)
Q Consensus 570 ~~~~~~~L~V~nLp~~-~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~-~e~A~~Al~~Ln--G~~~~Gr~I~ 645 (967)
.......|||+||+.. ++.++|+++|++||.|..|.++.+ .-.|||+|.+ ..+|..|+..|| |..|.|..++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g----~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG----AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT----CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 3456788999999999 999999999999999999999776 3479999999 789999999995 6788887777
Q ss_pred EEEc
Q 002093 646 AVQA 649 (967)
Q Consensus 646 V~~a 649 (967)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6543
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=2.5e-06 Score=80.83 Aligned_cols=71 Identities=10% Similarity=-0.024 Sum_probs=59.5
Q ss_pred CCCCEEEEeCCCCc-chHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcC-HHHHHHHHH-cc--Ccee
Q 002093 461 RPMRRLCVENLPLS-ASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLT-AEDASAALC-CD--GCSF 535 (967)
Q Consensus 461 ~~~r~LyVgNLp~~-~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~-~e~A~~Al~-ln--g~~l 535 (967)
...+.|||+||+.. ++.++|+++|+.|| .|..+........|||.|.+ +.+|..|+. || +..|
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G------------~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHG------------EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSC------------CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcC------------CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 45678999999999 99999999999998 34555555556689999999 899999999 84 6888
Q ss_pred ecceeEEe
Q 002093 536 SGSILKIK 543 (967)
Q Consensus 536 ~Gr~l~V~ 543 (967)
.|..+.+.
T Consensus 84 ~g~~~~~e 91 (121)
T 1owx_A 84 RNKEVTWE 91 (121)
T ss_dssp TSSSEEEE
T ss_pred eCcEEEEE
Confidence 99888776
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=2.8e-06 Score=76.23 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=58.7
Q ss_pred CceEEEcCCCcc------cCH---HHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEE
Q 002093 574 PHKIFIGGISRT------LSS---KMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 644 (967)
Q Consensus 574 ~~~L~V~nLp~~------~te---edL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I 644 (967)
..+|+|.-++.. ..+ .+|.+.|..||.|..++++.+. +||+|.+.++|.+||. |||..++|+.|
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 457777766522 221 4689999999999999998873 9999999999999998 99999999999
Q ss_pred EEEEccc
Q 002093 645 TAVQAVL 651 (967)
Q Consensus 645 ~V~~a~~ 651 (967)
+|.+-.+
T Consensus 88 ~V~~k~~ 94 (95)
T 1ufw_A 88 KISGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEeccCC
Confidence 9987543
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=1.4e-06 Score=78.26 Aligned_cols=58 Identities=7% Similarity=0.122 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCcceeEEe
Q 002093 702 EEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 767 (967)
Q Consensus 702 eei~eDIr~~f~kFG~V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG~~~~~r~~~v~~~ 767 (967)
+++..+|.+.|..||+|..|+|+.+. +||+|.+.++|.+||. |||.+++|+.++|+..
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 35567799999999999999999864 8999999999999998 9999999999998754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.4e-05 Score=71.64 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=68.6
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhc-----CCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEE
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAF-----GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 645 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~-----G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~ 645 (967)
.+..++|-|-|||..+++..|+.++++| |.|..|.++.| -|-|+|+|.+...|.+|.-+|+|..|.|++|.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC----CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 3457899999999999999999999999 99999999877 77899999999999999999999999999999
Q ss_pred EEEc
Q 002093 646 AVQA 649 (967)
Q Consensus 646 V~~a 649 (967)
|...
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00039 Score=63.70 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=63.5
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceeeccee
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr~l 540 (967)
..++|-+-|||-.++...|+.|++++..+ .. ..+..+..-..-+=|+|+|.+...|-+|.- |+|..|.|++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i------~~-g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHI------NE-KDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCC------CT-TTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhcc------Cc-cceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 36899999999999999999999998321 11 144566666778899999999999998886 99999999999
Q ss_pred EEeC
Q 002093 541 KIKR 544 (967)
Q Consensus 541 ~V~r 544 (967)
+++-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9984
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0027 Score=57.70 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeecceeE
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~Gr~l~ 541 (967)
..++|.|.|||+.+.++.|.-+|+.--. .| +-+|.++..-. +-|+|+|.+...|...|+.....|.|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rr-sG------GG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRR-SG------GGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTT-TC------CCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCc-CC------CceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 4579999999999999999999976211 11 12556665544 889999999999999999778889999999
Q ss_pred EeCCCcccccccccccccccccCCcCCcccCCCceEEEcCCCcccC
Q 002093 542 IKRPKEFVEVASGEAEKSVASVDSVSGIVKDSPHKIFIGGISRTLS 587 (967)
Q Consensus 542 V~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~t 587 (967)
|.. |. +..+.+|++.+|++.++
T Consensus 78 V~P---~~---------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRP---AP---------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEE---CC---------------------CCCCCCCCCCSCCCCCC
T ss_pred EEc---CC---------------------CCCcceEeeecCCCCCC
Confidence 972 11 22456788888887654
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.77 E-value=0.0076 Score=54.99 Aligned_cols=76 Identities=9% Similarity=0.041 Sum_probs=64.7
Q ss_pred CCceEEEcCCCccc-C----HHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 573 SPHKIFIGGISRTL-S----SKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 573 ~~~~L~V~nLp~~~-t----eedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
.+++|+|.||+..+ . .+.++++|..|+++..+.+.+ +-.=+.|.|.++++|.+|...|||..|+|..|+|-
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC----cceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 47899999998754 2 257899999999998887766 34567899999999999999999999999999999
Q ss_pred EcccC
Q 002093 648 QAVLD 652 (967)
Q Consensus 648 ~a~~~ 652 (967)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 98743
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.90 E-value=0.016 Score=52.87 Aligned_cols=69 Identities=13% Similarity=0.039 Sum_probs=55.8
Q ss_pred CCEEEEeCCCCcc-hH----HHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-ccCceee
Q 002093 463 MRRLCVENLPLSA-SE----KALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (967)
Q Consensus 463 ~r~LyVgNLp~~~-Te----edL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-lng~~l~ 536 (967)
+.+|+|.||+..+ +. +.++++|..|+. +.....-+|-.-..|.|.++++|.+|-. |++..|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~------------~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDK------------DTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCS------------SCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCc------------CcceeecCcceEEEEEeCChHHHHHHHHHhccceec
Confidence 4689999999876 32 567788877763 3445555666778999999999999999 9999999
Q ss_pred cceeEEe
Q 002093 537 GSILKIK 543 (967)
Q Consensus 537 Gr~l~V~ 543 (967)
|+.|+|-
T Consensus 73 g~~~r~Y 79 (104)
T 1wey_A 73 GKEMKLY 79 (104)
T ss_dssp TEECEEE
T ss_pred CceeEEE
Confidence 9999986
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.69 E-value=0.019 Score=51.64 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=48.4
Q ss_pred cCCCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHh
Q 002093 571 KDSPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGL 634 (967)
Q Consensus 571 ~~~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~L 634 (967)
+...+.++| ++|..+...||.++|+.||.| .|.++.| .-|||.|.+++.|..|+..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-----TEEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 344577778 999999999999999999976 4667665 47999999999999999876
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.98 E-value=0.075 Score=49.76 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=59.1
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCC-eEEEEEEc
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG-QVLTAVQA 649 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~G-r~I~V~~a 649 (967)
...-|.|-++|+.. -..|...|++||.|...... ....+..|.|.+..+|.+||. .||..|+| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 46789999999885 56788899999999887751 246799999999999999996 89999985 66777775
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.88 E-value=0.059 Score=48.17 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=55.0
Q ss_pred ceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC----CCCEEEEeecCcchHHHHHHHhCCCcc
Q 002093 575 HKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH----EEPCAFIEYVDQLVTPKAIAGLNGLKV 639 (967)
Q Consensus 575 ~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~----skG~aFVeF~~~e~A~~Al~~LnG~~~ 639 (967)
.+|.|.+||+.+|++++.+.++.+..+....++..+.+ .-.-|||.|.+.+++..-...++|+.|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 47899999999999999999999888776766655322 246899999999999999999999877
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.37 E-value=0.14 Score=48.00 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=53.7
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHHccCceeec-ceeE
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSG-SILK 541 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~lng~~l~G-r~l~ 541 (967)
...|.|-+.|+.. -..|...|+.||. |++........+-.|.|.+..+|.+||..||..|.| ..|-
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~------------Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIG 90 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGN------------ILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIG 90 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSC------------EEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCc------------EEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEE
Confidence 4689999999986 5577888999994 344444446789999999999999999999999975 4455
Q ss_pred Ee
Q 002093 542 IK 543 (967)
Q Consensus 542 V~ 543 (967)
|.
T Consensus 91 V~ 92 (119)
T 1wwh_A 91 VK 92 (119)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.25 E-value=0.038 Score=49.42 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=48.8
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeec-CCCcEEEEEEcCHHHHHHHHH-ccCceeecc
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ-REKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~-~skG~aFVeF~~~e~A~~Al~-lng~~l~Gr 538 (967)
.+|.|++||+++||+++.+.+..+....-+..+++. ...+ ..-+.|||.|.+.+++..... ++|..|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~-----~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND-----TSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC-----CSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc-----cCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 479999999999999999998765421111111111 0001 123569999999999999999 999988653
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.81 E-value=0.08 Score=47.74 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=46.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhC
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 635 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~Ln 635 (967)
.+.++| ++|..+...||.++|+.||.| .|.++.| .-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 355667 999999999999999999955 5777765 479999999999999998764
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.79 E-value=0.22 Score=45.25 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=59.2
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHh-----cCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEE
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCA-----FGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 647 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk-----~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~ 647 (967)
...+|.|.|||+.+.++.|.-+|++ -|.|..|.... +-|+|+|.+...|++.|+ -.-+.|.|..|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 4678999999999999999999997 25777776632 789999999999999886 33578899999997
Q ss_pred Eccc
Q 002093 648 QAVL 651 (967)
Q Consensus 648 ~a~~ 651 (967)
...+
T Consensus 80 P~~~ 83 (104)
T 2dhx_A 80 PAPP 83 (104)
T ss_dssp ECCC
T ss_pred cCCC
Confidence 7544
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.82 E-value=0.09 Score=49.93 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=57.2
Q ss_pred CCceEEEcCCCcccCHHHHHHHHHhcCCeeE-EEEeec--------------CC-CCCCEEEEeecCcchHHHHHHHhCC
Q 002093 573 SPHKIFIGGISRTLSSKMVMEIVCAFGPLKA-YHFEVN--------------ED-HEEPCAFIEYVDQLVTPKAIAGLNG 636 (967)
Q Consensus 573 ~~~~L~V~nLp~~~teedL~e~Fsk~G~V~~-v~l~~d--------------~~-~skG~aFVeF~~~e~A~~Al~~LnG 636 (967)
....|.|-+.|+..+ ..|.+.|++||.|.. +.+... +. ++..+..|.|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 356788889987765 567789999999865 322110 00 135789999999999999996 899
Q ss_pred CccCCeEEEEEEccc
Q 002093 637 LKVGGQVLTAVQAVL 651 (967)
Q Consensus 637 ~~~~Gr~I~V~~a~~ 651 (967)
..|+|..|-|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888877743
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.09 E-value=0.14 Score=46.07 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=47.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeec-CCCcEEEEEEcCHHHHHHHHH-ccCceeec
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ-REKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~-~skG~aFVeF~~~e~A~~Al~-lng~~l~G 537 (967)
.+-+|.|+.||+.+||+++.+.+.++-...-...+++. ...+ ..-..|||.|.+.++...... ++|..|.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~-----~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAAD-----LSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCC-----SSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCc-----cCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 34589999999999999987776543211001111110 0111 122469999999999999999 99988855
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.19 E-value=0.61 Score=41.95 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=42.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH
Q 002093 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC 529 (967)
Q Consensus 461 ~~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~ 529 (967)
...+-++| ++|+.+.-.||.++|++|| |+. +. .+ +-.-|||.|.+++.|..||.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fg---gv~--------I~-Wi--dDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFG---NIQ--------IS-WI--DDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTC---SCC--------CE-EE--ETTEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccC---CEE--------EE-EE--cCCeEEEEecCHHHHHHHHH
Confidence 34566777 9999999999999999998 220 11 11 25679999999999999998
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.29 E-value=0.22 Score=57.36 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=39.5
Q ss_pred CCCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCc-EEEEEEcCHHHHHHHHHccC
Q 002093 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG-QAFVEFLTAEDASAALCCDG 532 (967)
Q Consensus 462 ~~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG-~aFVeF~~~e~A~~Al~lng 532 (967)
..|.|||. .|..+++.+|.++|++||.+. ++..-.++| ||.|||.+.+++..++...+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~------------~~~~~~~~g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPIN------------NHFFYESFGLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCC------------CEEEECSSSEEEEEECC---CCHHHHSSCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcc------------eEEEEccCCeEEEEEeCCHHHHHHHHhccC
Confidence 35799997 799999999999999999533 333333444 99999999999998876433
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=87.34 E-value=0.33 Score=55.97 Aligned_cols=55 Identities=15% Similarity=0.263 Sum_probs=41.5
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHH
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIA 632 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~ 632 (967)
.+.|||. .|..+++.+|.+.|++||+|.++.+..+ ..-||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~---~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES---FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS---SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc---CCeEEEEEeCCHHHHHHHHh
Confidence 4689997 6888999999999999999999988765 23599999999999987754
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=87.33 E-value=0.26 Score=44.43 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=48.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCC----CCCEEEEeecCcchHHHHHHHhCCCcc
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDH----EEPCAFIEYVDQLVTPKAIAGLNGLKV 639 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~----skG~aFVeF~~~e~A~~Al~~LnG~~~ 639 (967)
.-+|.|..||+.+|++++.+.++..-.+.....+....+ .-.-|||.|.+.++...-...++|..|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 458999999999999988777766544333333222211 135789999999999999999999776
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=86.88 E-value=1.2 Score=42.35 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=52.1
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCe-------eeeeec-CCCcEEEEEEcCHHHHHHHHHccCcee
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPC-------IGCVIQ-REKGQAFVEFLTAEDASAALCCDGCSF 535 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v-------~~~~~~-~skG~aFVeF~~~e~A~~Al~lng~~l 535 (967)
..|.|-+.|+..+. .|...|+.||.+..-......... ...... ...++..|.|.++.+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 46888899776654 677899999965441111100000 000000 135678999999999999999999999
Q ss_pred ecceeEEe
Q 002093 536 SGSILKIK 543 (967)
Q Consensus 536 ~Gr~l~V~ 543 (967)
.|.-|-|.
T Consensus 87 ~G~mIGV~ 94 (132)
T 3p3d_A 87 NGVLLGVI 94 (132)
T ss_dssp TTEECEEE
T ss_pred CcEEEEEE
Confidence 99866665
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=85.00 E-value=0.49 Score=42.68 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=41.4
Q ss_pred CEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-cc
Q 002093 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD 531 (967)
Q Consensus 464 r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-ln 531 (967)
+-++| ++|+.+.-.||.++|++|| |+ .+..- +-.-|||.|.+++.|..||. ++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg---gv----------~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG---NI----------QISWI-DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE---EE----------EEEEE-ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC---CE----------EEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 34666 9999999999999999998 22 11111 25679999999999999998 53
No 401
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=67.77 E-value=1.4 Score=30.29 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=13.6
Q ss_pred CCCCCCCcCCCCCcc
Q 002093 392 KWDVAPVETYSVPSN 406 (967)
Q Consensus 392 ~~d~~P~~~~sv~~a 406 (967)
.||++|+|++.|+++
T Consensus 7 ~WDvpP~GyE~vtp~ 21 (28)
T 1jmt_B 7 YWDVPPPGFEHITPM 21 (28)
T ss_dssp CBTCCCTTCTTSCHH
T ss_pred ccCCCCCCccccCHH
Confidence 799999999999873
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=50.69 E-value=22 Score=41.47 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=45.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHHhcCCeeEEEEeecCCCCCCEEEEeecCcchHHHHHHHhC
Q 002093 574 PHKIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 635 (967)
Q Consensus 574 ~~~L~V~nLp~~~teedL~e~Fsk~G~V~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~Ln 635 (967)
++.++|+ +|..+...+|.++|+.||.| .|.++. ...|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-----CCeEEEEECCHHHHHHHHHHHH
Confidence 4566666 88899999999999999965 455543 4579999999999999998885
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=34.28 E-value=46 Score=38.63 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=42.2
Q ss_pred CCEEEEeCCCCcchHHHHHHHHHHhhhhcCcccccCCcCeeeeeecCCCcEEEEEEcCHHHHHHHHH-cc
Q 002093 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD 531 (967)
Q Consensus 463 ~r~LyVgNLp~~~TeedL~~~F~~fG~~~g~~~v~~~~~v~~~~~~~skG~aFVeF~~~e~A~~Al~-ln 531 (967)
.+.++|+ +|..+...+|.++|+.||. + ++. --+...|||.|.+.+.|..++. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~---v----------~V~-widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN---I----------QIS-WIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC---C----------EEE-ECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC---E----------EEE-EEcCCeEEEEECCHHHHHHHHHHHH
Confidence 4577887 9999999999999999982 1 111 1235679999999999999998 64
No 404
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=23.51 E-value=1.5e+02 Score=25.95 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=26.8
Q ss_pred eEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCC
Q 002093 718 VKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTN 754 (967)
Q Consensus 718 V~~V~I~r~~~g~~~G~gFVeF~~~e~A~~Ai~~LnG 754 (967)
|..|.+|.. .+||.||++...++...++..+.|
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCC
Confidence 777777763 689999999999988888777765
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.73 E-value=1.5e+02 Score=24.48 Aligned_cols=59 Identities=10% Similarity=0.241 Sum_probs=37.0
Q ss_pred cccCHHHHHHHHHhcCCe-----eEEEEeecCCCCCCEEEEeecCcchHHHHHHHhCCCccCCeEEEEEEc
Q 002093 584 RTLSSKMVMEIVCAFGPL-----KAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 649 (967)
Q Consensus 584 ~~~teedL~e~Fsk~G~V-----~~v~l~~d~~~skG~aFVeF~~~e~A~~Al~~LnG~~~~Gr~I~V~~a 649 (967)
..+...+|..++..-+.| -.|.+ ...|.||+.... .+..+++.|++..+.|+.+.|..+
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i------~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITI------MDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEE------CSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEE------eCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 345556777777665543 33555 345899988765 467788899999999999988765
Done!