BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002095
         (967 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C6J|A Chain A, Structure Of P. Knowlesi Dbl Domain Capable Of Binding
           Human Duffy Antigen
          Length = 338

 Score = 33.5 bits (75), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 7   KVSLGNFPDLAGAVN----KFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWPV 62
           +  LG+F D+    N     +S+ V+N   N  +  G DEKA++  K   + S E +W  
Sbjct: 103 RWGLGDFGDIIMGTNMEGIGYSQVVEN---NLRSIFGTDEKAKQDRKQWWNESKEHIWRA 159

Query: 63  MSF 65
           M F
Sbjct: 160 MMF 162


>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
           (Chp1)
 pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
           (Chp1)
          Length = 208

 Score = 30.4 bits (67), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 395 DAELETLREEY---HQRVATLERKVYALTK-ERDTLRREQNKKSDAAALLKEKDEIINQV 450
           D ELE +++E    H ++  L  +  +L K E  TL RE  ++    A+    D IIN  
Sbjct: 11  DEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAF 70

Query: 451 MAEGEELSKKQAAQEAQIRKLRAQIRELEEEKK 483
            +EGE+    Q      +R L A  R +E+ +K
Sbjct: 71  FSEGED----QVNFRGFMRTL-AHFRPIEDNEK 98


>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
           Exchanger 1 Complexed With Essential Cofactor
           Calcineurin B Homologous Protein 1
          Length = 195

 Score = 30.4 bits (67), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 395 DAELETLREEY---HQRVATLERKVYALTK-ERDTLRREQNKKSDAAALLKEKDEIINQV 450
           D ELE +++E    H ++  L  +  +L K E  TL RE  ++    A+    D IIN  
Sbjct: 11  DEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAF 70

Query: 451 MAEGEELSKKQAAQEAQIRKLRAQIRELEEEKK 483
             EGE+    Q      +R L A  R +E+ +K
Sbjct: 71  FPEGED----QVNFRGFMRTL-AHFRPIEDNEK 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.121    0.310 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,663,975
Number of Sequences: 62578
Number of extensions: 715324
Number of successful extensions: 1973
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1833
Number of HSP's gapped (non-prelim): 194
length of query: 967
length of database: 14,973,337
effective HSP length: 108
effective length of query: 859
effective length of database: 8,214,913
effective search space: 7056610267
effective search space used: 7056610267
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (26.2 bits)