Query 002095
Match_columns 967
No_of_seqs 130 out of 152
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 16:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4673 Transcription factor T 100.0 2E-129 4E-134 1097.3 76.4 900 1-958 1-960 (961)
2 PF12325 TMF_TATA_bd: TATA ele 100.0 2.9E-29 6.2E-34 240.9 13.7 103 852-954 18-120 (120)
3 PF12329 TMF_DNA_bd: TATA elem 99.6 9.5E-15 2.1E-19 130.2 9.1 68 434-501 1-68 (74)
4 KOG0161 Myosin class II heavy 99.1 0.00025 5.5E-09 93.5 75.4 49 855-903 1468-1516(1930)
5 PRK02224 chromosome segregatio 99.1 0.00018 3.9E-09 89.7 77.4 69 853-921 649-717 (880)
6 TIGR00606 rad50 rad50. This fa 99.0 0.00053 1.2E-08 89.4 71.3 86 854-939 988-1091(1311)
7 KOG0161 Myosin class II heavy 99.0 0.001 2.2E-08 88.1 75.7 77 407-486 936-1012(1930)
8 KOG4673 Transcription factor T 98.9 0.00058 1.3E-08 81.2 64.2 197 558-767 546-770 (961)
9 PRK02224 chromosome segregatio 98.8 0.0015 3.2E-08 81.6 73.8 109 373-485 183-291 (880)
10 PF12128 DUF3584: Protein of u 98.7 0.0052 1.1E-07 79.9 72.5 62 642-703 597-658 (1201)
11 TIGR02168 SMC_prok_B chromosom 98.7 0.0052 1.1E-07 77.8 78.2 12 931-942 916-927 (1179)
12 TIGR00606 rad50 rad50. This fa 98.6 0.0072 1.6E-07 79.2 73.3 139 568-708 476-626 (1311)
13 PF00038 Filament: Intermediat 98.6 0.0014 3E-08 72.3 42.0 117 623-749 165-282 (312)
14 KOG4674 Uncharacterized conser 98.6 0.01 2.2E-07 78.1 68.1 297 340-655 743-1053(1822)
15 PRK03918 chromosome segregatio 98.5 0.0099 2.1E-07 74.3 74.9 45 873-917 675-719 (880)
16 TIGR02168 SMC_prok_B chromosom 98.3 0.032 6.9E-07 70.9 79.0 43 856-898 865-907 (1179)
17 KOG4674 Uncharacterized conser 98.3 0.045 9.8E-07 72.4 67.2 31 469-499 801-831 (1822)
18 COG1196 Smc Chromosome segrega 98.1 0.087 1.9E-06 68.6 73.6 48 344-391 167-214 (1163)
19 PF09730 BicD: Microtubule-ass 98.0 0.1 2.2E-06 64.5 41.6 271 671-953 81-396 (717)
20 KOG0994 Extracellular matrix g 97.9 0.16 3.4E-06 64.3 46.9 67 362-429 1266-1332(1758)
21 PRK03918 chromosome segregatio 97.9 0.15 3.2E-06 64.0 74.5 25 591-615 408-432 (880)
22 PF10174 Cast: RIM-binding pro 97.9 0.19 4E-06 62.9 64.6 44 343-386 108-151 (775)
23 PF10174 Cast: RIM-binding pro 97.8 0.2 4.3E-06 62.7 60.6 38 913-950 545-582 (775)
24 PF07888 CALCOCO1: Calcium bin 97.8 0.16 3.4E-06 61.0 47.5 14 728-741 444-457 (546)
25 PF00261 Tropomyosin: Tropomyo 97.8 0.059 1.3E-06 58.2 31.4 84 551-649 80-163 (237)
26 PF12128 DUF3584: Protein of u 97.8 0.34 7.4E-06 63.5 73.1 32 396-427 302-333 (1201)
27 PF00261 Tropomyosin: Tropomyo 97.8 0.026 5.6E-07 60.9 27.9 71 582-656 163-233 (237)
28 COG1196 Smc Chromosome segrega 97.7 0.4 8.7E-06 62.6 79.1 42 439-480 296-337 (1163)
29 KOG0977 Nuclear envelope prote 97.6 0.33 7.1E-06 58.4 38.8 75 348-430 41-115 (546)
30 TIGR02169 SMC_prok_A chromosom 97.6 0.52 1.1E-05 60.4 76.0 9 65-73 28-36 (1164)
31 PF01576 Myosin_tail_1: Myosin 97.5 2.3E-05 4.9E-10 97.9 0.0 58 903-960 751-811 (859)
32 KOG0977 Nuclear envelope prote 97.5 0.25 5.4E-06 59.3 32.7 106 514-640 228-337 (546)
33 KOG0612 Rho-associated, coiled 97.5 0.73 1.6E-05 59.3 49.7 63 367-430 462-524 (1317)
34 PF07888 CALCOCO1: Calcium bin 97.5 0.47 1E-05 57.1 47.1 38 449-486 210-247 (546)
35 KOG0976 Rho/Rac1-interacting s 97.5 0.58 1.3E-05 57.7 47.9 84 610-704 313-396 (1265)
36 KOG0996 Structural maintenance 97.4 0.82 1.8E-05 58.6 67.1 77 863-949 934-1010(1293)
37 KOG0971 Microtubule-associated 97.4 0.71 1.5E-05 57.7 39.9 41 652-692 431-474 (1243)
38 KOG0996 Structural maintenance 97.4 0.86 1.9E-05 58.4 61.4 89 402-490 262-351 (1293)
39 PF09726 Macoilin: Transmembra 97.2 1.1 2.3E-05 55.9 38.6 81 407-489 488-575 (697)
40 KOG0250 DNA repair protein RAD 97.2 1.2 2.6E-05 57.0 35.1 43 431-473 309-351 (1074)
41 PF09726 Macoilin: Transmembra 97.1 0.8 1.7E-05 57.0 32.3 16 463-478 422-437 (697)
42 KOG0612 Rho-associated, coiled 97.1 1.9 4E-05 55.8 41.8 27 901-927 1023-1049(1317)
43 KOG4643 Uncharacterized coiled 97.1 1.7 3.7E-05 55.2 51.2 29 363-391 191-219 (1195)
44 PF09755 DUF2046: Uncharacteri 97.0 0.92 2E-05 51.2 34.0 132 345-487 23-156 (310)
45 PF01576 Myosin_tail_1: Myosin 96.9 0.00025 5.4E-09 88.8 0.0 47 854-900 606-652 (859)
46 PF05557 MAD: Mitotic checkpoi 96.9 0.012 2.6E-07 72.7 14.4 28 931-958 614-641 (722)
47 KOG1029 Endocytic adaptor prot 96.8 2.2 4.9E-05 52.8 35.4 79 853-931 531-614 (1118)
48 PRK04778 septation ring format 96.8 2 4.4E-05 52.1 45.3 18 568-585 322-339 (569)
49 PF00038 Filament: Intermediat 96.8 1.3 2.7E-05 49.3 36.2 89 647-749 164-257 (312)
50 PF05701 WEMBL: Weak chloropla 96.7 2.3 4.9E-05 51.4 51.9 23 339-361 31-53 (522)
51 PF05483 SCP-1: Synaptonemal c 96.7 2.5 5.5E-05 51.8 57.8 120 623-749 530-656 (786)
52 KOG0971 Microtubule-associated 96.6 3.6 7.9E-05 51.8 39.4 21 340-361 223-243 (1243)
53 KOG0999 Microtubule-associated 96.6 2.8 6E-05 50.4 42.9 97 671-774 154-253 (772)
54 PF12718 Tropomyosin_1: Tropom 96.4 0.62 1.3E-05 47.1 20.5 87 595-693 35-121 (143)
55 KOG1029 Endocytic adaptor prot 96.4 4.1 8.8E-05 50.7 37.7 31 648-678 489-519 (1118)
56 PRK11637 AmiB activator; Provi 96.4 3 6.4E-05 48.9 31.0 18 407-424 47-64 (428)
57 PF07111 HCR: Alpha helical co 96.4 4.1 8.9E-05 50.3 62.7 80 874-956 503-582 (739)
58 COG4942 Membrane-bound metallo 96.2 3.8 8.2E-05 48.2 32.7 42 445-486 38-79 (420)
59 PRK01156 chromosome segregatio 96.1 6.6 0.00014 50.0 73.4 25 591-615 419-443 (895)
60 KOG0994 Extracellular matrix g 96.1 7.2 0.00016 50.5 54.9 26 627-652 1511-1536(1758)
61 PRK11637 AmiB activator; Provi 96.1 4.3 9.2E-05 47.6 29.9 19 725-743 236-254 (428)
62 KOG4643 Uncharacterized coiled 96.0 7.2 0.00016 49.9 58.8 33 349-381 43-75 (1195)
63 PRK11281 hypothetical protein; 96.0 8.4 0.00018 50.6 40.5 91 592-683 84-180 (1113)
64 PRK04863 mukB cell division pr 96.0 9.9 0.00021 51.4 51.9 97 588-699 513-612 (1486)
65 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.0 1.1 2.4E-05 44.4 19.6 61 553-613 63-123 (132)
66 KOG0976 Rho/Rac1-interacting s 95.9 7.4 0.00016 48.7 51.6 39 410-448 179-218 (1265)
67 PF05701 WEMBL: Weak chloropla 95.8 6.7 0.00015 47.4 56.6 32 930-961 463-494 (522)
68 PHA02562 46 endonuclease subun 95.6 6.8 0.00015 46.8 27.8 15 509-523 171-185 (562)
69 COG4942 Membrane-bound metallo 95.5 7.3 0.00016 45.9 30.4 73 342-423 38-110 (420)
70 PF05622 HOOK: HOOK protein; 95.5 0.008 1.7E-07 74.1 2.8 27 351-377 111-137 (713)
71 PF06705 SF-assemblin: SF-asse 95.3 5.7 0.00012 43.3 31.3 101 571-674 71-175 (247)
72 PRK09039 hypothetical protein; 95.1 1.9 4.2E-05 49.3 20.2 54 554-611 44-97 (343)
73 PF15070 GOLGA2L5: Putative go 94.9 14 0.0003 45.8 50.4 94 854-950 411-504 (617)
74 KOG0250 DNA repair protein RAD 94.9 18 0.00039 46.9 54.4 64 671-741 399-462 (1074)
75 PRK01156 chromosome segregatio 94.7 18 0.00038 46.3 72.4 69 854-923 678-746 (895)
76 PF14662 CCDC155: Coiled-coil 94.6 5.2 0.00011 42.6 19.8 137 342-485 43-191 (193)
77 KOG0963 Transcription factor/C 94.3 18 0.0004 44.4 52.1 50 670-727 307-356 (629)
78 PF05557 MAD: Mitotic checkpoi 94.1 0.042 9.1E-07 68.0 4.0 70 857-931 566-635 (722)
79 PF12718 Tropomyosin_1: Tropom 94.0 6.5 0.00014 39.9 18.7 119 554-702 19-137 (143)
80 TIGR01005 eps_transp_fam exopo 93.9 21 0.00046 44.8 27.0 15 568-582 199-213 (754)
81 KOG1003 Actin filament-coating 93.9 10 0.00023 40.5 25.0 65 578-646 127-191 (205)
82 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.8 7.8 0.00017 38.5 19.9 46 594-650 2-47 (132)
83 PF04849 HAP1_N: HAP1 N-termin 93.7 16 0.00034 41.6 24.5 142 344-486 64-254 (306)
84 PRK04778 septation ring format 93.4 25 0.00053 43.1 49.8 66 568-637 117-182 (569)
85 COG1579 Zn-ribbon protein, pos 93.3 16 0.00034 40.4 22.7 78 551-631 105-182 (239)
86 KOG2129 Uncharacterized conser 93.2 20 0.00043 42.2 22.6 23 403-427 98-120 (552)
87 PF06160 EzrA: Septation ring 92.9 29 0.00062 42.5 46.9 63 554-617 304-366 (560)
88 PRK09039 hypothetical protein; 92.8 15 0.00033 42.3 21.3 18 567-584 78-95 (343)
89 PF05667 DUF812: Protein of un 92.5 34 0.00074 42.3 32.1 48 340-387 326-373 (594)
90 PF08317 Spc7: Spc7 kinetochor 92.4 24 0.00052 40.2 26.1 101 641-741 145-249 (325)
91 PF10473 CENP-F_leu_zip: Leuci 92.0 3.5 7.5E-05 41.9 13.3 87 865-961 53-139 (140)
92 PF15070 GOLGA2L5: Putative go 92.0 40 0.00086 42.0 48.5 59 350-420 5-63 (617)
93 KOG0995 Centromere-associated 92.0 37 0.0008 41.6 39.0 18 466-483 235-252 (581)
94 KOG0980 Actin-binding protein 91.9 46 0.001 42.6 29.8 50 552-601 347-399 (980)
95 KOG2129 Uncharacterized conser 91.8 16 0.00034 43.0 19.6 165 343-511 137-323 (552)
96 PHA02562 46 endonuclease subun 91.8 35 0.00076 40.9 33.3 22 463-484 178-199 (562)
97 COG2433 Uncharacterized conser 91.6 2 4.3E-05 52.2 12.7 83 865-947 430-512 (652)
98 PF09728 Taxilin: Myosin-like 91.6 29 0.00063 39.5 40.7 44 571-614 136-179 (309)
99 PF05622 HOOK: HOOK protein; 91.4 0.057 1.2E-06 66.8 0.0 45 339-383 243-287 (713)
100 PF10473 CENP-F_leu_zip: Leuci 91.1 20 0.00042 36.7 18.4 71 627-708 24-94 (140)
101 KOG4593 Mitotic checkpoint pro 90.8 53 0.0011 41.1 50.6 76 341-419 100-177 (716)
102 PF10498 IFT57: Intra-flagella 90.8 7.1 0.00015 45.3 15.9 127 571-704 192-318 (359)
103 PF12325 TMF_TATA_bd: TATA ele 90.6 6.5 0.00014 39.0 13.3 90 339-451 13-102 (120)
104 PF05010 TACC: Transforming ac 90.5 29 0.00062 37.6 29.9 59 589-661 112-170 (207)
105 PF04849 HAP1_N: HAP1 N-termin 90.4 37 0.00081 38.8 26.3 127 338-487 51-181 (306)
106 TIGR03007 pepcterm_ChnLen poly 90.4 45 0.00098 39.6 24.3 7 654-660 256-262 (498)
107 PF09789 DUF2353: Uncharacteri 90.2 11 0.00023 43.2 16.4 85 554-656 70-155 (319)
108 PF06160 EzrA: Septation ring 89.6 59 0.0013 39.9 46.1 115 369-483 24-153 (560)
109 PF05667 DUF812: Protein of un 89.4 65 0.0014 40.0 29.3 34 629-662 403-436 (594)
110 COG0419 SbcC ATPase involved i 89.3 79 0.0017 40.9 74.2 21 401-421 233-253 (908)
111 KOG0980 Actin-binding protein 89.3 78 0.0017 40.7 34.0 60 586-649 408-467 (980)
112 KOG0995 Centromere-associated 88.9 66 0.0014 39.5 47.8 97 367-472 232-328 (581)
113 KOG1853 LIS1-interacting prote 88.6 45 0.00098 37.2 27.6 49 568-616 25-73 (333)
114 COG1842 PspA Phage shock prote 88.0 45 0.00098 36.5 21.8 58 588-647 113-172 (225)
115 PRK10929 putative mechanosensi 88.0 1.1E+02 0.0023 40.8 42.7 36 626-661 104-139 (1109)
116 KOG0018 Structural maintenance 87.5 1.1E+02 0.0024 40.3 34.6 71 872-952 677-747 (1141)
117 PF08317 Spc7: Spc7 kinetochor 87.3 59 0.0013 37.1 22.1 30 587-616 141-170 (325)
118 PF15397 DUF4618: Domain of un 87.2 56 0.0012 36.6 27.9 41 620-667 38-78 (258)
119 PF07111 HCR: Alpha helical co 87.0 95 0.0021 39.1 56.3 93 382-479 138-231 (739)
120 TIGR00634 recN DNA repair prot 86.8 85 0.0018 38.4 26.7 80 339-419 151-231 (563)
121 PF15619 Lebercilin: Ciliary p 85.6 55 0.0012 35.0 24.9 97 590-701 14-110 (194)
122 COG1340 Uncharacterized archae 85.5 72 0.0016 36.3 31.3 67 646-713 132-198 (294)
123 PF10168 Nup88: Nuclear pore c 85.1 76 0.0016 40.3 20.9 32 667-698 633-664 (717)
124 PF10168 Nup88: Nuclear pore c 84.8 85 0.0018 39.8 21.2 56 437-492 609-665 (717)
125 KOG1103 Predicted coiled-coil 84.7 86 0.0019 36.4 28.5 56 567-626 249-314 (561)
126 KOG0249 LAR-interacting protei 84.7 1.1E+02 0.0024 38.6 21.1 33 630-663 202-234 (916)
127 PRK10884 SH3 domain-containing 84.3 21 0.00045 38.5 13.6 39 622-660 88-126 (206)
128 TIGR03007 pepcterm_ChnLen poly 84.2 99 0.0022 36.8 24.8 62 876-937 322-383 (498)
129 PF08614 ATG16: Autophagy prot 83.8 11 0.00025 39.6 11.4 72 674-745 110-181 (194)
130 PRK10929 putative mechanosensi 83.7 1.7E+02 0.0037 39.1 44.4 49 437-485 150-199 (1109)
131 PF08614 ATG16: Autophagy prot 83.0 3.4 7.3E-05 43.5 7.0 84 857-957 102-185 (194)
132 PLN03229 acetyl-coenzyme A car 82.8 98 0.0021 39.3 20.0 26 398-423 513-544 (762)
133 PF09728 Taxilin: Myosin-like 82.6 96 0.0021 35.4 37.9 75 407-481 43-122 (309)
134 COG1579 Zn-ribbon protein, pos 82.5 85 0.0019 34.8 23.0 25 590-614 54-78 (239)
135 COG1340 Uncharacterized archae 82.5 96 0.0021 35.4 37.0 153 568-741 88-240 (294)
136 PF14915 CCDC144C: CCDC144C pr 81.5 1E+02 0.0023 35.2 31.4 105 568-694 68-172 (305)
137 COG3074 Uncharacterized protei 81.2 27 0.00058 31.9 10.7 72 552-656 7-78 (79)
138 KOG4807 F-actin binding protei 80.7 1.3E+02 0.0028 35.6 29.6 258 339-643 291-581 (593)
139 COG3883 Uncharacterized protei 80.3 1.1E+02 0.0024 34.5 26.6 145 344-488 33-191 (265)
140 PRK11281 hypothetical protein; 79.8 2.3E+02 0.005 38.0 45.0 36 453-490 117-152 (1113)
141 PF15619 Lebercilin: Ciliary p 79.5 93 0.002 33.3 24.5 76 404-489 16-91 (194)
142 TIGR01005 eps_transp_fam exopo 79.5 1.8E+02 0.0039 36.7 29.1 41 596-636 289-332 (754)
143 KOG0978 E3 ubiquitin ligase in 79.5 1.9E+02 0.004 36.8 54.4 24 408-431 228-251 (698)
144 KOG0243 Kinesin-like protein [ 78.9 2.3E+02 0.005 37.5 51.0 140 339-490 408-556 (1041)
145 KOG4360 Uncharacterized coiled 78.3 1.7E+02 0.0037 35.7 21.1 136 351-486 71-253 (596)
146 TIGR03017 EpsF chain length de 78.1 1.5E+02 0.0032 34.8 25.9 14 650-663 259-272 (444)
147 PF10226 DUF2216: Uncharacteri 78.0 34 0.00073 36.6 12.1 84 345-428 19-136 (195)
148 PF04111 APG6: Autophagy prote 76.7 35 0.00076 38.9 12.9 81 865-948 44-124 (314)
149 TIGR03185 DNA_S_dndD DNA sulfu 76.5 2.1E+02 0.0045 35.7 33.9 70 341-417 208-279 (650)
150 PF06005 DUF904: Protein of un 76.3 53 0.0011 30.0 11.4 68 341-417 3-70 (72)
151 KOG4360 Uncharacterized coiled 76.0 17 0.00037 43.7 10.3 77 861-937 223-303 (596)
152 PF04156 IncA: IncA protein; 75.0 77 0.0017 32.9 14.0 52 902-953 130-181 (191)
153 PRK10884 SH3 domain-containing 74.6 38 0.00082 36.6 11.8 37 626-662 99-135 (206)
154 PF09738 DUF2051: Double stran 74.5 58 0.0013 37.2 13.8 94 343-448 78-171 (302)
155 PF07106 TBPIP: Tat binding pr 74.1 40 0.00086 34.7 11.5 85 858-947 73-162 (169)
156 PF13870 DUF4201: Domain of un 74.0 1.2E+02 0.0025 31.6 19.6 123 342-474 6-134 (177)
157 smart00787 Spc7 Spc7 kinetocho 72.5 1.9E+02 0.004 33.3 25.1 56 644-699 143-198 (312)
158 PF06008 Laminin_I: Laminin Do 71.4 1.7E+02 0.0036 32.3 31.2 71 407-487 45-115 (264)
159 PF05911 DUF869: Plant protein 70.9 3.2E+02 0.0068 35.3 27.1 114 632-747 72-208 (769)
160 PRK15422 septal ring assembly 70.9 43 0.00094 31.2 9.5 64 549-612 4-77 (79)
161 PRK11519 tyrosine kinase; Prov 70.4 1.8E+02 0.0039 36.7 18.2 13 283-295 50-62 (719)
162 PRK09841 cryptic autophosphory 70.2 2.9E+02 0.0063 35.0 19.9 13 625-637 309-321 (726)
163 KOG3990 Uncharacterized conser 69.9 45 0.00097 37.1 11.0 76 335-428 218-295 (305)
164 PF09731 Mitofilin: Mitochondr 69.3 2.8E+02 0.006 34.0 29.1 30 395-424 246-275 (582)
165 PF11932 DUF3450: Protein of u 68.8 1E+02 0.0022 33.7 13.8 49 853-901 24-72 (251)
166 KOG0964 Structural maintenance 68.6 3.8E+02 0.0083 35.4 39.8 93 859-951 694-806 (1200)
167 PF04111 APG6: Autophagy prote 68.4 73 0.0016 36.4 13.0 54 374-429 68-121 (314)
168 PF12329 TMF_DNA_bd: TATA elem 68.4 42 0.00091 30.6 9.0 65 854-918 2-70 (74)
169 PF05010 TACC: Transforming ac 68.2 1.9E+02 0.004 31.6 28.1 18 730-747 144-161 (207)
170 PF04156 IncA: IncA protein; 68.0 1.6E+02 0.0034 30.6 15.4 54 371-426 96-149 (191)
171 PF06810 Phage_GP20: Phage min 68.0 38 0.00082 34.9 9.7 68 866-943 15-82 (155)
172 PF15254 CCDC14: Coiled-coil d 67.7 3.6E+02 0.0078 34.7 20.2 37 410-449 451-487 (861)
173 PF04899 MbeD_MobD: MbeD/MobD 67.2 63 0.0014 29.5 9.7 59 624-689 7-65 (70)
174 COG2433 Uncharacterized conser 66.7 83 0.0018 39.0 13.4 14 437-450 487-500 (652)
175 PRK04863 mukB cell division pr 66.5 5.1E+02 0.011 36.0 76.4 101 854-954 989-1112(1486)
176 PF12761 End3: Actin cytoskele 66.3 66 0.0014 34.7 11.2 48 585-632 93-140 (195)
177 PF10267 Tmemb_cc2: Predicted 66.0 99 0.0021 36.7 13.6 100 570-686 219-318 (395)
178 KOG0804 Cytoplasmic Zn-finger 65.7 2.4E+02 0.0052 34.1 16.4 39 669-707 378-416 (493)
179 PF06005 DUF904: Protein of un 65.7 80 0.0017 28.9 10.1 64 859-925 6-69 (72)
180 PF02403 Seryl_tRNA_N: Seryl-t 65.6 32 0.00069 32.7 8.1 67 857-923 29-102 (108)
181 PF08826 DMPK_coil: DMPK coile 64.4 59 0.0013 28.9 8.7 23 594-616 24-46 (61)
182 PF12709 Kinetocho_Slk19: Cent 64.0 65 0.0014 30.6 9.4 50 395-450 33-86 (87)
183 PF11180 DUF2968: Protein of u 63.9 2.1E+02 0.0045 31.0 14.2 21 627-647 84-104 (192)
184 smart00787 Spc7 Spc7 kinetocho 63.9 2.7E+02 0.0059 32.0 23.1 49 438-486 144-192 (312)
185 PF09789 DUF2353: Uncharacteri 62.7 3E+02 0.0064 32.0 23.9 108 363-479 2-113 (319)
186 PF10267 Tmemb_cc2: Predicted 62.4 3.3E+02 0.0072 32.4 28.6 62 859-920 214-276 (395)
187 COG5185 HEC1 Protein involved 62.0 3.7E+02 0.008 32.8 40.2 81 312-421 229-309 (622)
188 PF15003 HAUS2: HAUS augmin-li 61.8 44 0.00095 37.7 9.3 90 365-472 49-140 (277)
189 PF12795 MscS_porin: Mechanose 61.7 2.4E+02 0.0053 30.6 26.2 59 626-684 80-138 (240)
190 KOG0978 E3 ubiquitin ligase in 61.3 4.5E+02 0.0097 33.6 52.4 30 625-654 522-551 (698)
191 PF10212 TTKRSYEDQ: Predicted 60.8 4E+02 0.0087 32.8 19.7 85 674-765 421-505 (518)
192 PF10146 zf-C4H2: Zinc finger- 60.6 2.7E+02 0.0058 30.8 15.6 95 626-745 10-104 (230)
193 COG1842 PspA Phage shock prote 60.5 2.6E+02 0.0057 30.7 21.5 57 560-616 21-80 (225)
194 PF00435 Spectrin: Spectrin re 58.6 89 0.0019 27.6 9.3 32 903-934 74-105 (105)
195 PF09787 Golgin_A5: Golgin sub 58.3 4.2E+02 0.0091 32.3 32.8 82 569-650 213-297 (511)
196 KOG0163 Myosin class VI heavy 57.7 5.3E+02 0.012 33.3 24.9 25 56-80 334-361 (1259)
197 KOG0018 Structural maintenance 57.5 6.1E+02 0.013 33.9 38.8 76 371-458 653-728 (1141)
198 PF15450 DUF4631: Domain of un 56.8 4.6E+02 0.01 32.3 45.8 43 625-667 374-416 (531)
199 PF07106 TBPIP: Tat binding pr 56.1 83 0.0018 32.3 9.7 67 340-420 70-136 (169)
200 KOG1003 Actin filament-coating 55.9 3E+02 0.0066 29.9 24.2 31 675-705 104-134 (205)
201 PRK10246 exonuclease subunit S 55.8 6.3E+02 0.014 33.6 70.2 44 904-947 824-867 (1047)
202 TIGR01000 bacteriocin_acc bact 55.4 4.3E+02 0.0092 31.5 22.8 26 721-746 290-315 (457)
203 PF07889 DUF1664: Protein of u 55.3 1.3E+02 0.0027 30.5 10.4 69 877-945 35-104 (126)
204 PF14197 Cep57_CLD_2: Centroso 54.8 1.1E+02 0.0023 27.8 8.9 33 863-895 4-36 (69)
205 PF12777 MT: Microtubule-bindi 54.3 3.9E+02 0.0085 30.8 19.2 96 855-953 219-315 (344)
206 PF04012 PspA_IM30: PspA/IM30 53.9 3E+02 0.0065 29.3 23.8 24 592-615 116-139 (221)
207 PF11932 DUF3450: Protein of u 53.9 1.4E+02 0.003 32.7 11.6 93 854-953 53-158 (251)
208 PF06785 UPF0242: Uncharacteri 53.9 1.4E+02 0.0031 34.7 11.6 97 854-960 131-231 (401)
209 COG3096 MukB Uncharacterized p 53.6 6.1E+02 0.013 32.8 30.3 247 509-772 345-645 (1480)
210 PF12240 Angiomotin_C: Angiomo 53.1 3.3E+02 0.0072 29.7 13.7 50 411-460 24-86 (205)
211 PF06156 DUF972: Protein of un 53.1 49 0.0011 32.3 7.0 43 349-391 8-50 (107)
212 TIGR03545 conserved hypothetic 52.9 1.8E+02 0.0039 36.0 13.3 85 626-710 163-249 (555)
213 PF09304 Cortex-I_coil: Cortex 52.7 2.4E+02 0.0053 27.9 13.3 88 347-451 14-101 (107)
214 PF10186 Atg14: UV radiation r 52.7 3.4E+02 0.0074 29.6 19.0 27 365-391 22-48 (302)
215 PF14992 TMCO5: TMCO5 family 51.8 1.2E+02 0.0026 34.4 10.7 20 410-429 73-92 (280)
216 KOG0946 ER-Golgi vesicle-tethe 51.7 6.7E+02 0.015 32.7 33.5 28 397-424 643-670 (970)
217 TIGR00634 recN DNA repair prot 51.5 5.5E+02 0.012 31.6 26.6 18 730-747 347-364 (563)
218 PF14197 Cep57_CLD_2: Centroso 50.4 1.2E+02 0.0025 27.6 8.4 12 371-382 6-17 (69)
219 PF09731 Mitofilin: Mitochondr 50.3 5.6E+02 0.012 31.4 23.8 37 854-892 529-565 (582)
220 KOG1962 B-cell receptor-associ 49.9 1.8E+02 0.0039 32.0 11.3 15 448-462 130-144 (216)
221 PF04350 PilO: Pilus assembly 49.6 28 0.00062 34.0 5.0 59 883-942 4-62 (144)
222 PF10498 IFT57: Intra-flagella 49.5 5E+02 0.011 30.5 18.0 77 628-704 221-297 (359)
223 TIGR03017 EpsF chain length de 49.1 5E+02 0.011 30.4 29.6 43 596-638 255-300 (444)
224 PRK10698 phage shock protein P 48.4 4E+02 0.0086 29.1 20.7 22 638-659 163-184 (222)
225 PF02403 Seryl_tRNA_N: Seryl-t 47.6 1.2E+02 0.0026 28.8 8.7 27 407-433 29-55 (108)
226 PRK13169 DNA replication intia 47.5 58 0.0012 32.1 6.6 42 350-391 9-50 (110)
227 TIGR01010 BexC_CtrB_KpsE polys 47.2 1.9E+02 0.004 33.2 11.7 53 901-953 213-265 (362)
228 PF11559 ADIP: Afadin- and alp 46.5 3.2E+02 0.007 27.5 17.1 48 651-698 79-126 (151)
229 PF04012 PspA_IM30: PspA/IM30 45.8 4E+02 0.0087 28.4 26.5 77 562-638 22-102 (221)
230 PF00769 ERM: Ezrin/radixin/mo 45.7 4.6E+02 0.01 29.0 17.8 14 854-867 186-199 (246)
231 PF15188 CCDC-167: Coiled-coil 45.2 77 0.0017 30.0 6.7 66 624-697 2-67 (85)
232 PF04977 DivIC: Septum formati 44.9 46 0.001 29.3 5.2 28 364-391 25-52 (80)
233 TIGR02894 DNA_bind_RsfA transc 44.6 1.1E+02 0.0024 32.1 8.4 50 874-926 100-149 (161)
234 PRK11519 tyrosine kinase; Prov 44.3 7.8E+02 0.017 31.3 18.4 52 369-420 273-324 (719)
235 PF12711 Kinesin-relat_1: Kine 44.3 98 0.0021 29.4 7.3 80 324-415 4-85 (86)
236 PRK09841 cryptic autophosphory 44.2 7.8E+02 0.017 31.3 17.9 55 367-421 271-325 (726)
237 PLN03229 acetyl-coenzyme A car 44.0 8.4E+02 0.018 31.6 27.7 77 373-453 432-519 (762)
238 PF10481 CENP-F_N: Cenp-F N-te 43.3 5.6E+02 0.012 29.3 14.1 16 648-663 14-29 (307)
239 PRK06975 bifunctional uroporph 43.2 2.6E+02 0.0057 35.2 12.9 56 595-661 378-436 (656)
240 TIGR02977 phageshock_pspA phag 43.2 4.6E+02 0.0099 28.3 23.1 20 593-612 118-137 (219)
241 PLN02678 seryl-tRNA synthetase 43.1 1.1E+02 0.0024 36.8 9.4 53 406-458 32-84 (448)
242 KOG0239 Kinesin (KAR3 subfamil 43.0 2.3E+02 0.005 35.9 12.4 33 866-898 243-275 (670)
243 PF04871 Uso1_p115_C: Uso1 / p 42.8 3.1E+02 0.0067 27.8 11.1 30 912-941 80-109 (136)
244 KOG4593 Mitotic checkpoint pro 42.7 8.4E+02 0.018 31.2 64.0 47 442-491 137-183 (716)
245 PF09744 Jnk-SapK_ap_N: JNK_SA 42.6 4.2E+02 0.0091 27.7 13.5 103 367-475 47-151 (158)
246 PF10186 Atg14: UV radiation r 42.4 4.9E+02 0.011 28.4 20.3 17 854-870 256-272 (302)
247 PF04912 Dynamitin: Dynamitin 42.3 6.3E+02 0.014 29.6 15.8 132 375-525 244-388 (388)
248 PRK10869 recombination and rep 42.0 7.6E+02 0.016 30.5 28.3 72 345-417 153-225 (553)
249 PRK05431 seryl-tRNA synthetase 41.5 1.2E+02 0.0026 36.0 9.3 71 406-490 27-97 (425)
250 KOG0804 Cytoplasmic Zn-finger 41.2 7.4E+02 0.016 30.2 18.2 23 682-704 377-399 (493)
251 PF15358 TSKS: Testis-specific 41.2 7.2E+02 0.016 30.0 18.7 52 909-961 347-398 (558)
252 TIGR02449 conserved hypothetic 40.7 2.3E+02 0.0051 25.6 8.7 43 577-619 17-59 (65)
253 PRK03947 prefoldin subunit alp 40.4 3.7E+02 0.0081 26.7 11.3 39 859-897 8-46 (140)
254 PF01442 Apolipoprotein: Apoli 40.1 3.9E+02 0.0085 26.6 23.9 16 646-661 149-164 (202)
255 KOG1962 B-cell receptor-associ 40.0 3.6E+02 0.0078 29.7 11.7 21 685-705 149-169 (216)
256 COG4026 Uncharacterized protei 39.9 2.8E+02 0.0062 30.7 10.8 32 673-704 135-166 (290)
257 TIGR03752 conj_TIGR03752 integ 39.7 2.6E+02 0.0057 34.0 11.5 72 883-961 71-143 (472)
258 PF10212 TTKRSYEDQ: Predicted 38.3 6.9E+02 0.015 30.9 14.7 95 400-500 413-514 (518)
259 PF06428 Sec2p: GDP/GTP exchan 38.2 55 0.0012 31.7 4.8 76 870-948 7-83 (100)
260 PF07058 Myosin_HC-like: Myosi 38.2 4.8E+02 0.01 30.3 12.5 49 341-392 34-88 (351)
261 COG4985 ABC-type phosphate tra 37.9 3.9E+02 0.0085 29.9 11.5 81 646-745 162-244 (289)
262 PF07139 DUF1387: Protein of u 37.5 2E+02 0.0044 33.0 9.7 68 869-939 162-252 (302)
263 KOG0249 LAR-interacting protei 37.3 1E+03 0.022 30.7 26.3 17 407-423 70-86 (916)
264 PF06810 Phage_GP20: Phage min 37.2 3.3E+02 0.0071 28.2 10.5 44 444-487 1-48 (155)
265 KOG4403 Cell surface glycoprot 37.1 8.4E+02 0.018 29.6 15.0 59 595-666 309-368 (575)
266 PF05335 DUF745: Protein of un 36.9 5.7E+02 0.012 27.5 15.1 63 625-698 107-169 (188)
267 COG3883 Uncharacterized protei 36.3 6.9E+02 0.015 28.4 26.3 50 438-487 52-101 (265)
268 PF04102 SlyX: SlyX; InterPro 36.2 1.8E+02 0.0039 26.1 7.4 42 650-691 2-43 (69)
269 PF05266 DUF724: Protein of un 36.1 3.9E+02 0.0085 28.6 11.2 77 865-944 97-173 (190)
270 PF04642 DUF601: Protein of un 36.1 1E+02 0.0023 34.4 7.0 54 652-705 186-242 (311)
271 PRK10920 putative uroporphyrin 36.0 5.8E+02 0.013 30.4 13.5 57 593-660 90-150 (390)
272 KOG0239 Kinesin (KAR3 subfamil 35.8 1E+03 0.023 30.3 17.7 77 401-478 235-312 (670)
273 PF01486 K-box: K-box region; 35.8 2.9E+02 0.0063 26.1 9.2 44 367-417 16-59 (100)
274 PRK13428 F0F1 ATP synthase sub 35.8 8.5E+02 0.018 29.3 15.4 12 617-628 160-171 (445)
275 TIGR03752 conj_TIGR03752 integ 35.0 3.5E+02 0.0076 33.0 11.6 52 371-431 74-126 (472)
276 PF11902 DUF3422: Protein of u 34.9 2E+02 0.0043 34.5 9.6 111 854-964 213-347 (420)
277 COG0419 SbcC ATPase involved i 34.5 1.2E+03 0.025 30.5 75.1 10 628-637 482-491 (908)
278 PF15294 Leu_zip: Leucine zipp 34.4 7.5E+02 0.016 28.3 15.0 135 318-452 108-274 (278)
279 PF10234 Cluap1: Clusterin-ass 34.0 7.5E+02 0.016 28.1 14.4 54 644-704 161-214 (267)
280 COG4026 Uncharacterized protei 34.0 2.6E+02 0.0056 31.0 9.4 44 566-609 159-205 (290)
281 TIGR01000 bacteriocin_acc bact 33.6 8.9E+02 0.019 28.9 23.7 9 571-579 105-113 (457)
282 PF05911 DUF869: Plant protein 33.6 1.2E+03 0.026 30.4 34.1 130 343-493 18-147 (769)
283 PRK00409 recombination and DNA 33.4 1.2E+03 0.026 30.3 17.5 21 5-25 60-80 (782)
284 COG3206 GumC Uncharacterized p 33.3 8.9E+02 0.019 28.8 25.6 66 593-658 200-270 (458)
285 PF06785 UPF0242: Uncharacteri 32.9 8.8E+02 0.019 28.6 16.8 53 371-423 100-157 (401)
286 PF10234 Cluap1: Clusterin-ass 32.8 4E+02 0.0086 30.2 11.0 17 512-528 225-241 (267)
287 KOG0946 ER-Golgi vesicle-tethe 32.7 1.3E+03 0.027 30.4 27.9 17 371-387 700-716 (970)
288 PRK12704 phosphodiesterase; Pr 32.7 1E+03 0.022 29.3 24.1 13 881-893 313-325 (520)
289 PRK00888 ftsB cell division pr 32.5 1E+02 0.0022 29.9 5.7 27 365-391 36-62 (105)
290 TIGR02209 ftsL_broad cell divi 32.3 1.2E+02 0.0027 27.3 5.9 30 362-391 30-59 (85)
291 PRK06231 F0F1 ATP synthase sub 32.2 6.7E+02 0.015 27.0 15.4 8 593-600 164-171 (205)
292 KOG0963 Transcription factor/C 31.6 1.2E+03 0.025 29.6 43.8 26 721-746 316-341 (629)
293 KOG1853 LIS1-interacting prote 31.6 8.2E+02 0.018 27.8 22.3 14 731-744 166-179 (333)
294 PRK04325 hypothetical protein; 31.1 3.7E+02 0.008 24.6 8.7 49 554-606 7-55 (74)
295 PF13094 CENP-Q: CENP-Q, a CEN 31.1 4.3E+02 0.0094 26.9 10.3 76 328-426 6-81 (160)
296 TIGR00414 serS seryl-tRNA synt 30.4 2.4E+02 0.0052 33.5 9.4 71 406-490 29-100 (418)
297 PLN02678 seryl-tRNA synthetase 30.3 1.4E+02 0.0031 35.9 7.6 35 858-892 34-68 (448)
298 cd07606 BAR_SFC_plant The Bin/ 30.1 7.4E+02 0.016 26.8 12.6 86 876-961 75-167 (202)
299 TIGR03495 phage_LysB phage lys 30.0 5.9E+02 0.013 26.1 10.7 23 406-428 74-96 (135)
300 PRK00295 hypothetical protein; 29.9 4.1E+02 0.0089 23.9 8.6 48 555-606 4-51 (68)
301 PRK13182 racA polar chromosome 29.7 2.1E+02 0.0046 30.2 7.9 65 855-919 83-149 (175)
302 PRK13169 DNA replication intia 29.7 2.2E+02 0.0048 28.2 7.4 47 344-390 10-56 (110)
303 PF04582 Reo_sigmaC: Reovirus 29.7 98 0.0021 35.8 5.8 110 594-746 27-136 (326)
304 PF14931 IFT20: Intraflagellar 29.5 5.9E+02 0.013 25.5 12.9 98 369-471 19-120 (120)
305 PF13851 GAS: Growth-arrest sp 29.5 7.4E+02 0.016 26.7 22.2 105 648-752 23-137 (201)
306 KOG2751 Beclin-like protein [S 29.4 9.8E+02 0.021 29.0 13.8 42 446-487 177-218 (447)
307 PRK05431 seryl-tRNA synthetase 29.4 1.5E+02 0.0033 35.2 7.6 34 859-892 30-63 (425)
308 KOG1937 Uncharacterized conser 29.4 1.1E+03 0.025 28.8 24.0 191 558-750 233-431 (521)
309 TIGR01069 mutS2 MutS2 family p 29.0 4.1E+02 0.009 34.2 11.7 29 930-958 561-589 (771)
310 TIGR02132 phaR_Bmeg polyhydrox 28.8 6.7E+02 0.015 27.1 11.1 70 869-941 84-153 (189)
311 PF04102 SlyX: SlyX; InterPro 28.6 2.8E+02 0.0061 24.8 7.4 48 555-606 3-50 (69)
312 KOG2072 Translation initiation 28.5 1.5E+03 0.032 29.9 43.2 78 584-666 666-743 (988)
313 PF07795 DUF1635: Protein of u 28.4 1.2E+02 0.0025 33.3 5.8 39 856-894 25-63 (214)
314 PF02044 Bombesin: Bombesin-li 28.3 23 0.00049 22.9 0.3 12 59-70 3-14 (14)
315 PF14662 CCDC155: Coiled-coil 28.2 8.1E+02 0.017 26.7 27.2 21 371-391 9-29 (193)
316 PRK00736 hypothetical protein; 28.2 4.5E+02 0.0097 23.7 8.6 48 555-606 4-51 (68)
317 PRK15422 septal ring assembly 27.4 5.3E+02 0.012 24.3 9.6 69 854-925 8-76 (79)
318 PRK13182 racA polar chromosome 27.4 4.9E+02 0.011 27.6 10.1 58 560-617 89-147 (175)
319 PRK14127 cell division protein 27.4 3E+02 0.0065 27.2 7.9 48 369-417 43-102 (109)
320 PF15066 CAGE1: Cancer-associa 27.3 1.2E+03 0.027 28.5 28.6 47 461-507 326-372 (527)
321 PRK00295 hypothetical protein; 27.2 3.7E+02 0.0081 24.2 7.9 24 650-673 3-26 (68)
322 PF09311 Rab5-bind: Rabaptin-l 27.2 33 0.00072 36.0 1.5 36 866-901 10-45 (181)
323 PLN02320 seryl-tRNA synthetase 26.8 2.6E+02 0.0057 34.3 8.9 23 468-490 139-161 (502)
324 PF07765 KIP1: KIP1-like prote 26.6 2.4E+02 0.0052 26.2 6.6 48 905-952 14-72 (74)
325 KOG0979 Structural maintenance 26.5 1.7E+03 0.037 29.9 33.1 73 369-449 656-728 (1072)
326 PF05700 BCAS2: Breast carcino 26.4 6.7E+02 0.014 27.2 11.2 71 567-641 147-217 (221)
327 PF05546 She9_MDM33: She9 / Md 26.2 9E+02 0.02 26.6 13.8 65 341-405 31-98 (207)
328 KOG0979 Structural maintenance 26.1 1.7E+03 0.038 29.8 33.1 50 437-486 628-677 (1072)
329 TIGR02449 conserved hypothetic 25.9 3.7E+02 0.0081 24.4 7.5 42 859-900 2-43 (65)
330 PF03915 AIP3: Actin interacti 25.9 1.2E+03 0.027 28.1 17.5 119 341-474 150-275 (424)
331 PF09755 DUF2046: Uncharacteri 25.9 1.1E+03 0.024 27.4 36.7 29 682-710 256-284 (310)
332 KOG4302 Microtubule-associated 25.8 1.1E+03 0.024 30.2 14.0 98 860-960 64-193 (660)
333 PRK03947 prefoldin subunit alp 25.7 6.7E+02 0.015 24.9 12.6 44 443-486 92-135 (140)
334 PRK02793 phi X174 lysis protei 25.6 4.6E+02 0.01 23.9 8.3 25 649-673 5-29 (72)
335 COG1382 GimC Prefoldin, chaper 25.5 7.1E+02 0.015 25.1 12.3 28 624-651 10-37 (119)
336 PRK06568 F0F1 ATP synthase sub 25.4 7.9E+02 0.017 25.6 15.8 25 573-600 103-127 (154)
337 TIGR01069 mutS2 MutS2 family p 25.2 1.6E+03 0.034 29.1 17.0 18 7-24 59-76 (771)
338 PF00769 ERM: Ezrin/radixin/mo 25.0 9.7E+02 0.021 26.5 18.2 28 863-890 174-201 (246)
339 PF10883 DUF2681: Protein of u 25.0 1.2E+02 0.0025 28.9 4.5 27 364-390 24-50 (87)
340 PF11629 Mst1_SARAH: C termina 25.0 1.2E+02 0.0027 26.0 4.1 16 905-920 22-37 (49)
341 PF04375 HemX: HemX; InterPro 24.9 1.1E+03 0.025 27.5 13.5 22 639-660 123-144 (372)
342 TIGR02231 conserved hypothetic 24.9 7E+02 0.015 30.3 12.2 19 642-660 128-146 (525)
343 KOG4552 Vitamin-D-receptor int 24.9 9.7E+02 0.021 26.5 14.5 85 399-487 7-95 (272)
344 PF06657 Cep57_MT_bd: Centroso 24.9 4.1E+02 0.0088 24.7 7.9 47 854-900 14-72 (79)
345 PF15066 CAGE1: Cancer-associa 24.8 1.4E+03 0.03 28.2 25.8 88 376-463 361-461 (527)
346 TIGR00414 serS seryl-tRNA synt 24.7 4.2E+02 0.009 31.6 10.0 68 858-925 31-106 (418)
347 PRK00736 hypothetical protein; 24.6 4E+02 0.0087 24.0 7.6 19 649-667 2-20 (68)
348 PRK02119 hypothetical protein; 24.6 4.7E+02 0.01 23.9 8.1 19 649-667 6-24 (73)
349 PRK14143 heat shock protein Gr 24.2 1E+03 0.022 26.5 12.2 77 335-418 60-136 (238)
350 PF08826 DMPK_coil: DMPK coile 24.2 4.6E+02 0.0099 23.5 7.7 24 405-428 37-60 (61)
351 PF13863 DUF4200: Domain of un 24.1 6.6E+02 0.014 24.2 15.8 32 627-658 7-38 (126)
352 PRK04406 hypothetical protein; 23.9 5E+02 0.011 23.9 8.2 19 649-667 8-26 (75)
353 PF06818 Fez1: Fez1; InterPro 23.8 9.9E+02 0.021 26.2 15.3 117 649-765 35-174 (202)
354 PF13514 AAA_27: AAA domain 23.8 1.9E+03 0.041 29.5 72.7 526 340-960 172-813 (1111)
355 cd07639 BAR_ACAP1 The Bin/Amph 23.7 9E+02 0.02 26.3 11.4 60 901-960 100-163 (200)
356 PRK08476 F0F1 ATP synthase sub 23.7 7.7E+02 0.017 24.9 16.2 16 521-536 57-72 (141)
357 PF03962 Mnd1: Mnd1 family; I 23.7 9.1E+02 0.02 25.7 12.7 26 595-620 110-135 (188)
358 PF12777 MT: Microtubule-bindi 23.5 2.8E+02 0.0061 31.9 8.2 44 347-390 219-262 (344)
359 TIGR02894 DNA_bind_RsfA transc 23.5 9E+02 0.02 25.6 11.1 44 903-953 105-148 (161)
360 PF09403 FadA: Adhesion protei 23.5 7.9E+02 0.017 24.9 13.1 67 340-409 25-95 (126)
361 PRK04406 hypothetical protein; 23.3 5.9E+02 0.013 23.5 8.6 49 553-605 8-56 (75)
362 KOG4451 Uncharacterized conser 23.2 7.5E+02 0.016 27.7 10.6 84 864-947 40-123 (286)
363 PRK11546 zraP zinc resistance 23.2 4.3E+02 0.0093 27.4 8.4 72 846-920 40-114 (143)
364 KOG2077 JNK/SAPK-associated pr 23.0 4.5E+02 0.0097 32.9 9.7 75 414-495 301-379 (832)
365 PRK02793 phi X174 lysis protei 23.0 5.4E+02 0.012 23.4 8.2 49 554-606 6-54 (72)
366 KOG0972 Huntingtin interacting 22.8 1.2E+03 0.027 27.0 15.8 39 666-704 266-304 (384)
367 PRK00106 hypothetical protein; 22.8 1.5E+03 0.034 28.1 26.0 165 516-691 25-199 (535)
368 PF05837 CENP-H: Centromere pr 22.7 6E+02 0.013 24.6 9.0 67 855-921 1-70 (106)
369 PRK00846 hypothetical protein; 22.7 5.3E+02 0.012 24.1 8.1 18 649-666 10-27 (77)
370 PF01920 Prefoldin_2: Prefoldi 22.6 6.2E+02 0.013 23.4 9.9 22 439-460 56-77 (106)
371 CHL00118 atpG ATP synthase CF0 22.5 8.3E+02 0.018 24.9 15.8 15 522-536 73-87 (156)
372 PF00170 bZIP_1: bZIP transcri 22.3 3.4E+02 0.0074 23.6 6.6 36 864-899 26-61 (64)
373 PF08172 CASP_C: CASP C termin 22.2 8E+02 0.017 27.4 11.0 25 367-391 10-34 (248)
374 PF11559 ADIP: Afadin- and alp 22.2 8.1E+02 0.018 24.6 17.8 23 682-704 61-83 (151)
375 PF08581 Tup_N: Tup N-terminal 22.0 6.6E+02 0.014 23.5 12.1 30 721-750 38-67 (79)
376 PRK04325 hypothetical protein; 22.0 5.8E+02 0.012 23.4 8.2 19 649-667 6-24 (74)
377 PF06705 SF-assemblin: SF-asse 21.9 1.1E+03 0.023 25.9 26.7 31 864-894 204-234 (247)
378 PF15369 KIAA1328: Uncharacter 21.7 5.5E+02 0.012 29.9 9.7 61 570-641 8-68 (328)
379 PF12001 DUF3496: Domain of un 21.7 7.3E+02 0.016 24.8 9.3 31 678-708 5-36 (111)
380 KOG4809 Rab6 GTPase-interactin 21.7 1.7E+03 0.036 28.1 41.1 62 595-658 394-455 (654)
381 PF10018 Med4: Vitamin-D-recep 21.6 5.9E+02 0.013 26.9 9.5 56 437-496 4-59 (188)
382 PF07227 DUF1423: Protein of u 21.6 1.3E+03 0.028 28.2 12.9 101 356-490 322-422 (446)
383 PRK02119 hypothetical protein; 21.1 3.8E+02 0.0082 24.5 6.8 11 409-419 39-49 (73)
384 PF10224 DUF2205: Predicted co 21.0 4.7E+02 0.01 24.6 7.4 51 341-391 15-65 (80)
385 PF12808 Mto2_bdg: Micro-tubul 20.9 2.6E+02 0.0057 24.3 5.4 42 350-391 5-50 (52)
386 PRK13729 conjugal transfer pil 20.9 3.4E+02 0.0073 33.1 8.2 53 555-607 68-123 (475)
387 KOG3119 Basic region leucine z 20.8 3.4E+02 0.0073 30.5 7.9 16 136-151 42-57 (269)
388 PF07058 Myosin_HC-like: Myosi 20.8 1.4E+03 0.03 26.8 15.4 64 623-693 10-86 (351)
389 smart00502 BBC B-Box C-termina 20.7 6.9E+02 0.015 23.2 13.3 8 593-600 44-51 (127)
390 PF12761 End3: Actin cytoskele 20.6 1.1E+03 0.024 25.6 11.3 46 339-384 93-142 (195)
391 TIGR03794 NHPM_micro_HlyD NHPM 20.6 1.4E+03 0.03 26.8 19.5 10 729-738 241-250 (421)
392 PF03961 DUF342: Protein of un 20.5 3.3E+02 0.0072 32.4 8.2 78 867-948 330-407 (451)
393 PRK10722 hypothetical protein; 20.5 3E+02 0.0065 30.8 7.1 57 568-653 156-212 (247)
394 PF06156 DUF972: Protein of un 20.4 3.3E+02 0.0072 26.7 6.7 44 858-901 9-52 (107)
395 PF10211 Ax_dynein_light: Axon 20.4 1.1E+03 0.023 25.3 14.9 104 344-485 86-189 (189)
396 TIGR03185 DNA_S_dndD DNA sulfu 20.4 1.7E+03 0.038 27.8 45.3 21 406-426 208-228 (650)
397 PF04899 MbeD_MobD: MbeD/MobD 20.3 6.8E+02 0.015 23.0 8.6 52 906-961 18-69 (70)
398 PF15397 DUF4618: Domain of un 20.3 1.3E+03 0.028 26.2 30.1 19 682-700 202-220 (258)
399 PF02181 FH2: Formin Homology 20.2 6.1E+02 0.013 29.0 10.0 45 902-946 323-369 (370)
400 PF08647 BRE1: BRE1 E3 ubiquit 20.1 7.6E+02 0.016 23.5 12.9 75 349-439 3-77 (96)
401 PRK05892 nucleoside diphosphat 20.1 2.5E+02 0.0053 29.2 6.1 61 682-742 13-74 (158)
No 1
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=100.00 E-value=1.9e-129 Score=1097.32 Aligned_cols=900 Identities=52% Similarity=0.676 Sum_probs=701.8
Q ss_pred Cccccc-cccCCCCCchhhhhhhhHHHHHhHHhhhhcccCcccccccCCCCCCCCCCCCcch-----------hhhhccc
Q 002095 1 MAWFSG-KVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWP-----------VMSFMGH 68 (967)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 68 (967)
|+||+| |++||+|||+.|+||||+++||||.+|||+++||+++++.+..+. ++.+|| ||+||||
T Consensus 1 MsWF~~Ak~sl~~~lDiq~~~~~~~~~~k~~p~~~~~~~Gg~d~s~~~~~~n----a~~~~Pp~a~tka~~~Pv~~~~~~ 76 (961)
T KOG4673|consen 1 MSWFSGAKVSLGGFLDIQGAVNKFQESVKNIPKNFDNALGGDDKSDSAAEDN----ASSMWPPAADTKALFDPVMSFMGN 76 (961)
T ss_pred CchhhhhhhhhcccccccccchhhhhcccCCcccCCcccCCCCccccccccc----CCCCCCCCCCcccccccHHHhccc
Confidence 999999 999999999999999999999999999999999999999988876 667787 9999999
Q ss_pred CCCCCCCC-cCCCCCCCCCCCCCcccccccccccccccccccchhhhccCC---CCCCcCC-CCCcccccccchhccCCC
Q 002095 69 KSEGSSPT-ESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKAS---PKTEKDD-EHPDTAENLDFVVSEHGK 143 (967)
Q Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 143 (967)
.+.+.|++ +.+--...|-+-+-|++..+ ++|-...+ ..++.-++ +..+-|+ ..|.+.+ .|+.++..
T Consensus 77 t~f~~P~~~~~~vvt~pPs~~~~peee~~-----S~~~g~~q-s~~~ds~~~~s~~~~a~~~~sP~~~e---~~~~vP~v 147 (961)
T KOG4673|consen 77 TSFEKPDTLEDSVVTEPPSQIEQPEEEAG-----SVKLGTEQ-SVSVDSNKETSVRREADQADSPEVTE---TVVLVPKV 147 (961)
T ss_pred ccccCcccccccccccCCCcccCchhhcc-----cchhccch-hhhhhhhhhhcccccccCCCCCCCcc---ccCcCccc
Confidence 99999733 22222233333333332211 22222221 11111111 1112222 1222222 25555555
Q ss_pred CCCCCCcccCCCCchhhhccCCCCccchhhhhhhccCCCCcccccccccCCCC-----------ccccccccccccccCc
Q 002095 144 VDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPF-----------EADQIEISSSLRDESD 212 (967)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 212 (967)
.+..|+++.-..++-..+..+++ ++.++-...-..++.+..-+.|. +-+.-|+++..+.+-.
T Consensus 148 ~~~~Se~~lE~is~ts~qt~~~~-------~~~~~l~P~~~ps~p~S~~s~~~~~tSd~ee~d~Ed~~~e~~~~~r~~t~ 220 (961)
T KOG4673|consen 148 DEPQSEILLEEISETSLQTPESS-------GYKTSLQPNEKPSMPASQDSQPEQPTSDAEESDPEDSEAEEVTVERKDTV 220 (961)
T ss_pred chhhhHHHHHHHHhhhccCcccc-------ccccccCCCCCCCCCccccccCCCCcchhhhcCcccchhhhhhhhhcccc
Confidence 55555554222222222211111 01111000000001111111111 1123344444444444
Q ss_pred ccccccccccccccccchhHHhhhhhhhhccCCCcccccchhhhhccC---CCCCCCccchhhhhhhhhhcccccCCCCc
Q 002095 213 NVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVG---TESSDSQSVSAEETERVRELLSSSASSPK 289 (967)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (967)
...+.....++.++.++....++.+.....+.|+..||..+|+.+..| +.+.++|+..++ ..+.+.+++|.+||
T Consensus 221 hs~~s~~~mk~~~~~~~~~a~~~~n~~~d~~~Ss~~FE~i~~~~~~~gkSr~~s~v~~~d~~~---~s~~s~~eiiin~n 297 (961)
T KOG4673|consen 221 HSPVSDGQMKITYMDETTNAQEILNENLDGRTSSKNFEVIPDINHVNGKSRIESPVAHPDLIF---ESDGSPYEIIINKN 297 (961)
T ss_pred cCccchhhHHHHHHHhhhhhhhhhccccccccccchhhhchhhhhccCCCCCCCCCCChhhhc---cCCCCcceeecCCC
Confidence 444555667789999999999999999999999999999999999884 455555555444 44566788888887
Q ss_pred ccccc------cccCCCCCCCCccchhhhhhhccccCcccccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 290 AVSET------VCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAAR 363 (967)
Q Consensus 290 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~kl~~~~~~~~~~l~~~~r 363 (967)
+.|++ ++++|++.-+......+-. . +++-++..|.+++.+.+.||+|++++|+||+.+|+ +|
T Consensus 298 g~SsT~e~ser~s~~v~~el~~~~~~~e~~---------e-s~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~le--aR 365 (961)
T KOG4673|consen 298 GRSSTDEISERISDFVSRELDSRLDTSELN---------E-SQRSSSATNVSDSDDVQLELDKTKKEIKMLNNALE--AR 365 (961)
T ss_pred CCccccccccccchHHHHHhccchhhHHhh---------h-ccCCCCCccccCchhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 76655 5566666655554443321 1 45557888888886669999999999999999999 56
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHH----
Q 002095 364 QAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQN--KKSDAA---- 437 (967)
Q Consensus 364 ~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~--k~s~~~---- 437 (967)
++|.+++++++++-.++++....+.++++++++.+++|+++|+|||++||+|||++|||||+||++.+ +...+.
T Consensus 366 eaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~ 445 (961)
T KOG4673|consen 366 EAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK 445 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 66777788888888888888888999999999999999999999999999999999999999999988 443333
Q ss_pred HHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 002095 438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKG---LVTKLQVEENKVESIKRDKTATEKLLQETI 514 (967)
Q Consensus 438 a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~---Lk~KlE~e~~klesikr~~~a~EK~lqe~i 514 (967)
+.|+|||++|++||+|||||||++|++++||||||+|+++.+.-... +-.+++.+.+++..+.+.++++||.+++.|
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I 525 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI 525 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999998843333 446889999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 515 EKHQVELGEQKDYYTN--ALAAAKEAEELAEARANNEARAEL--ESRLR--EAGERETMLVQALEELRQTLSRTEQQAVF 588 (967)
Q Consensus 515 ek~q~eL~a~k~~~~~--~L~~AKe~e~lAE~ra~~Ea~~~L--e~~lk--Eaeere~~L~qqIedLRe~L~Raeq~a~~ 588 (967)
.+++.++..++.+|.+ .+..+.++..+|+-+++..++-.| +.+++ ++.++..+|.++|.|||.+|+++++.+++
T Consensus 526 ~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 526 EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 555667767778888888887655 44566 78888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE 668 (967)
Q Consensus 589 rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erE 668 (967)
||++||+||.+|++||+++|.|+++++++||.+|||||||||+||.++..++.+|+..|++|+.||.+.+..++.++.+|
T Consensus 606 rEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~e 685 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEE 685 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQE 748 (967)
Q Consensus 669 r~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~~~e 748 (967)
+.....+..++-.+-....+++++|+++.+|+++|+.+++|+.+++++|.+++++++.+++++.+|+.++..++.+++++
T Consensus 686 qgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~ 765 (961)
T KOG4673|consen 686 QGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQE 765 (961)
T ss_pred hhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhh-hhhhhccccCCccccccccccCCCccccCCCCCCCCcchhhhhhccccCC
Q 002095 749 LQEALMHRELLQQEIEREKTARVDLERRA-SAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDS 827 (967)
Q Consensus 749 lqea~~~~~~Lqq~lE~Ek~~r~elE~~~-~~~s~~~s~q~~~~~~~s~f~~~s~tr~lSs~sS~gs~~~s~~lq~s~d~ 827 (967)
++....+.++.++.++.++..+.++++.. +.++ ++.+|..+|+++.+ ..+.+.+|.
T Consensus 766 lq~~ll~ve~~~k~~e~~~~~~~~lers~a~i~S---------------------sp~~s~~~SgSnee-~ag~~~~f~- 822 (961)
T KOG4673|consen 766 LQEVLLHVELIQKDLEREKASRLDLERSTARINS---------------------SPVSSQLPSGSNEE-IAGQNSAFE- 822 (961)
T ss_pred hhHHHHHHHHHHHHhhhCHHHHhhcccccCccCC---------------------CCchhhCCCCchHh-Hhcccchhh-
Confidence 99998888888888887777666666531 1111 22222233333222 222223322
Q ss_pred CCcccccCCCC--CCCCCcccccCCCh----h-HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 828 SDSLSDRKNTV--EPTMSPYYVKSMTP----S-AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (967)
Q Consensus 828 sd~~s~~~~~g--~~s~S~~~~~s~tp----S-~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e 900 (967)
.|..+...++| +.+|+||++...+| + ++++.|||||||++||||+|++|+++|+.|++|||+||++||.|+.+
T Consensus 823 ~dd~s~~~s~gqq~~~~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek 902 (961)
T KOG4673|consen 823 NDDFSEKRSMGQQEATMSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREK 902 (961)
T ss_pred ccchhhhhcCCCCCcccchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444555 44677887665554 3 89999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002095 901 AAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKIQ 958 (967)
Q Consensus 901 ~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeLlkQi~ 958 (967)
++++++++.+|++|++||+|+|||||||+|+.||||+||.|||+|||.|||+||.++.
T Consensus 903 ~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeLl~~~~ 960 (961)
T KOG4673|consen 903 ADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKEQIDELLNKIQ 960 (961)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999998763
No 2
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=99.96 E-value=2.9e-29 Score=240.94 Aligned_cols=103 Identities=50% Similarity=0.712 Sum_probs=101.1
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhH
Q 002095 852 PSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEE 931 (967)
Q Consensus 852 pS~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEe 931 (967)
.++|+++||++|||+++++++|++|+++|+.|++|||+||.+|+.++...++++.|+.++++|+.||+|+|+|||||+|+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 002095 932 LEELRADIMDLKEMYREQVNLLV 954 (967)
Q Consensus 932 VEELraDV~DVKeMYR~QIdeLl 954 (967)
||||++||+|||+|||.||++||
T Consensus 98 veEL~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 98 VEELRADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999985
No 3
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=99.56 E-value=9.5e-15 Score=130.19 Aligned_cols=68 Identities=47% Similarity=0.603 Sum_probs=61.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Q 002095 434 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKR 501 (967)
Q Consensus 434 s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~KlE~e~~klesikr 501 (967)
+++.++|+|||++|++||+||++||+++++|+++|||||++++++++.+..|+.+++.....+.++..
T Consensus 1 ~sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 1 SSLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999888877666665554
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.12 E-value=0.00025 Score=93.50 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002095 855 FESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAI 903 (967)
Q Consensus 855 LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~ 903 (967)
+...+..+...+..+...+..+.+....|..+|..|+....++...+..
T Consensus 1468 ~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~e 1516 (1930)
T KOG0161|consen 1468 LSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHE 1516 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666677778888888888888888888887765533
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.09 E-value=0.00018 Score=89.66 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=50.2
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 002095 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAA 921 (967)
Q Consensus 853 S~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTl 921 (967)
..+...+.++...+..+...+..+...++.+..+|-.+-...+.+.....++..+...+..|..+|+.+
T Consensus 649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~ 717 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEA 717 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777777778888888888888888777777777666666777777777777766553
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=0.00053 Score=89.42 Aligned_cols=86 Identities=8% Similarity=0.107 Sum_probs=46.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKM--TAQCEKLRAEAAI---------LPGIQAELDALRRRHSAAL 922 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrL--t~EnEel~~e~~~---------v~~Le~eleeLqqRYeTlL 922 (967)
.+++.+..+..++..+..+|..+...+..+.+.|-.+ ..++..+...+.. .+.+..++..|..+++.+-
T Consensus 988 ~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~ 1067 (1311)
T TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIK 1067 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666667777777777777666666666 4444444444422 2334445555555554444
Q ss_pred -------HHhccchhHHHHHHHhH
Q 002095 923 -------ELMGERDEELEELRADI 939 (967)
Q Consensus 923 -------ELLGEKsEeVEELraDV 939 (967)
--++....++..|+.+|
T Consensus 1068 ~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1068 RNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555444
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.96 E-value=0.001 Score=88.14 Aligned_cols=77 Identities=30% Similarity=0.352 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 407 QRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 407 qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk 486 (967)
+.|..+++.+..+...+..+..+. ..+...|+.=.+.|.+|-+-..||+|.-..++..|+.|-..+...++..++|+
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek---~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~ 1012 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEK---NAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLN 1012 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444332222 12222233333333333333334444333444455555555555555444444
No 8
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.89 E-value=0.00058 Score=81.20 Aligned_cols=197 Identities=28% Similarity=0.282 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHhccCCcCchHHHHH
Q 002095 558 LREAGERETMLVQALEELRQTLS---RTE-QQAVFREDMLRRDIEDLQRRYQASER---RCE-ELVTQVPESTRPLLRQI 629 (967)
Q Consensus 558 lkEaeere~~L~qqIedLRe~L~---Rae-q~a~~rEeeLR~EIs~Le~RLEeaEs---RaE-ELSssvseATrPLLRQI 629 (967)
..+++.+-..++...+.++-.|+ |++ ..++.++..|-..+.+|...|+-.|. |-| .+.- -|
T Consensus 546 ~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~-----------Ei 614 (961)
T KOG4673|consen 546 AAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRG-----------EI 614 (961)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 33444444456666777776553 333 35566777888888888888775432 222 2222 23
Q ss_pred HHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 002095 630 EAIQETTAR----RAEAWAAV---ERSLNLRLQEAEAKA---AASEER-ERSVNERLS--QTLSRINVLEAQISCLRAEQ 696 (967)
Q Consensus 630 EtLQ~q~as----qsenWe~i---E~sL~~RL~elE~kl---~~A~er-Er~~~ekl~--~~~~ri~~LE~els~lr~E~ 696 (967)
+.||.-|-. +.+.-+.+ =+-|...|..++..+ ..|-+| |+.++++|. .+..++..++++-. ++++
T Consensus 615 ~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqge--kqEl 692 (961)
T KOG4673|consen 615 EDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGE--KQEL 692 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh--HHHH
Confidence 333333332 22222222 244777787777543 444455 889999998 67777888777432 2222
Q ss_pred HHHHHHH-----H--HHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 697 TQLTKSL-----E--KERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREK 767 (967)
Q Consensus 697 ~~L~~qL-----E--~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~~~elqea~~~~~~Lqq~lE~Ek 767 (967)
-.+..+| + --|+.....+..+..++..+..++..+..+++++.+++.++.+-.++....+..+.++++...
T Consensus 693 L~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~l 770 (961)
T KOG4673|consen 693 LSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEVL 770 (961)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 2222221 1 111111222333445555666677778889999999999888766666655555556655543
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=98.83 E-value=0.0015 Score=81.63 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q 002095 373 AKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMA 452 (967)
Q Consensus 373 a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmE 452 (967)
..+..+.+.|+.+|..... .++.......-.+|+.++..+..+..+...++++..........+..+-..|..|..
T Consensus 183 ~~~~~~~~~~~~~l~~~~~----~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~ 258 (880)
T PRK02224 183 SDQRGSLDQLKAQIEEKEE----KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEA 258 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554211 222333334444455555555444444444444433332222333333344444444
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 453 EGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (967)
Q Consensus 453 EGEKLSKkELq~sniIKKLRakikElEee~k~L 485 (967)
+=+.|-.+--..+..+..++.++.+++..+..+
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~l 291 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEEL 291 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444443333333
No 10
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.69 E-value=0.0052 Score=79.86 Aligned_cols=62 Identities=31% Similarity=0.431 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 642 AWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSL 703 (967)
Q Consensus 642 nWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qL 703 (967)
.|..-|..|..++..++.++..+..+...+.+.+.....++..+..++..++.+..+....+
T Consensus 597 d~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1201)
T PF12128_consen 597 DYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDL 658 (1201)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46666667777777777766666666666666665555566666655555555544444433
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.65 E-value=0.0052 Score=77.84 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=4.6
Q ss_pred HHHHHHHhHHHH
Q 002095 931 ELEELRADIMDL 942 (967)
Q Consensus 931 eVEELraDV~DV 942 (967)
++..|+..+.++
T Consensus 916 ~l~~l~~~~~~~ 927 (1179)
T TIGR02168 916 ELEELREKLAQL 927 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 333334333333
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=0.0072 Score=79.20 Aligned_cols=139 Identities=16% Similarity=0.233 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CcCchHHHHHHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVP--ESTRPLLRQIEAIQETTARRAEAWAA 645 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvs--eATrPLLRQIEtLQ~q~asqsenWe~ 645 (967)
+...+.++...|......+ ....+..+|......+..++.....|...+. ..+..+.-++.-++..+......+..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 553 (1311)
T TIGR00606 476 LDQELRKAERELSKAEKNS--LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRK 553 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333222 2233344444444444444444333333221 33444555666677777777666666
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 646 VERSLNLRLQEA----------EAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQ 708 (967)
Q Consensus 646 iE~sL~~RL~el----------E~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~ 708 (967)
+-.....++..+ +..+......-..++++...+...+..++..+..++.++..+..+|+....
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~ 626 (1311)
T TIGR00606 554 IKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYED 626 (1311)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555443 333333333334455555555555666666666666666666666665443
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.63 E-value=0.0014 Score=72.32 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 623 RPLLRQIEAIQETTA-RRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTK 701 (967)
Q Consensus 623 rPLLRQIEtLQ~q~a-sqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~ 701 (967)
..|-.-|..++.+|. ....+|..+|..+..++.++..........-..++..+..+...+..+..++..++..+..|..
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 346666778888887 5679999999999999999999888777777788888889999999999999999988888877
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002095 702 SLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQEL 749 (967)
Q Consensus 702 qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~~~el 749 (967)
++..-..+.. .+...++..+..++.++..++..+...+
T Consensus 245 ~l~~le~~~~----------~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 245 QLRELEQRLD----------EEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH----------HHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 7764332222 3344556667788888888877776544
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.60 E-value=0.01 Score=78.13 Aligned_cols=297 Identities=21% Similarity=0.251 Sum_probs=157.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL 419 (967)
Q Consensus 340 ~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L 419 (967)
...|++.|+.+=.+|-..-...-+.+.+++.+.-.|+-.+.+|+.....+... ....+.-|-+||..|++-++.|
T Consensus 743 le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s-----~~~~k~~~e~~i~eL~~el~~l 817 (1822)
T KOG4674|consen 743 LEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEES-----EMATKDKCESRIKELERELQKL 817 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788777777766655556777788888888888888887777655442 2345777778888888887777
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh--H
Q 002095 420 TKERDTLRREQN-KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENK--V 496 (967)
Q Consensus 420 ~KErD~LKke~~-k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~KlE~e~~k--l 496 (967)
.+....-..... -.++...-|..=--+|..++.+-..|...--..++.|-+|-.++.++++.++....+.....++ .
T Consensus 818 k~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~ 897 (1822)
T KOG4674|consen 818 KKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSN 897 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchh
Confidence 665431111111 0112233444445566667777777766666677778888888888888777666533322211 1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHh-------hhhHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 002095 497 ESIKRDKTATEKLLQETIEKHQVELG-------EQKDYYT---NALAAAKEAEELAEARANNEARA-ELESRLREAGERE 565 (967)
Q Consensus 497 esikr~~~a~EK~lqe~iek~q~eL~-------a~k~~~~---~~L~~AKe~e~lAE~ra~~Ea~~-~Le~~lkEaeere 565 (967)
.+.......+.+. .+.+..++..|. ..+..|. ..|..-+ ..+.+.+-+.+++. .+...+..++.+.
T Consensus 898 ~d~~~~~~~Lr~~-~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~k--s~lde~~~~~ea~ie~~~~k~tslE~~l 974 (1822)
T KOG4674|consen 898 EDATILEDTLRKE-LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVK--SELDETRLELEAKIESLHKKITSLEEEL 974 (1822)
T ss_pred hhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1110000111111 111211122221 1111111 1111100 11223332222211 1223333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHH
Q 002095 566 TMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAA 645 (967)
Q Consensus 566 ~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~ 645 (967)
..|..++.+|+..+..+..-...+-..|.++++.|+.-+........++ .++|.++|.++......|..
T Consensus 975 s~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~-----------~~~~~~~k~dl~~~~~~~~~ 1043 (1822)
T KOG4674|consen 975 SELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQA-----------NEQIEDLQNDLKTETEQLRK 1043 (1822)
T ss_pred HHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655544444445556666666666666555555544 34777788888888788877
Q ss_pred HHHHHHHHHH
Q 002095 646 VERSLNLRLQ 655 (967)
Q Consensus 646 iE~sL~~RL~ 655 (967)
.....-..+.
T Consensus 1044 a~~~Ye~el~ 1053 (1822)
T KOG4674|consen 1044 AQSKYESELV 1053 (1822)
T ss_pred HHHHHHHHHH
Confidence 7776665554
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=98.52 E-value=0.0099 Score=74.26 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 002095 873 LASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRR 917 (967)
Q Consensus 873 LarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqR 917 (967)
+..+......+...|-.+..+.+.++....++.....++..++..
T Consensus 675 l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~l~~~ 719 (880)
T PRK03918 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444443333444444444444433
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.32 E-value=0.032 Score=70.88 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=19.9
Q ss_pred HHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 856 ESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLR 898 (967)
Q Consensus 856 qA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~ 898 (967)
+..+..+..++..++.++..+...+..+..++..+..+...+.
T Consensus 865 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 907 (1179)
T TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907 (1179)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455455555555554444444444433
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.31 E-value=0.045 Score=72.40 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH
Q 002095 469 RKLRAQIRELEEEKKGLVTKLQVEENKVESI 499 (967)
Q Consensus 469 KKLRakikElEee~k~Lk~KlE~e~~klesi 499 (967)
.++-.+|.+++.++..|+.+++....++..+
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l 831 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLREL 831 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777777777777766555554433
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.13 E-value=0.087 Score=68.60 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
+-+..++....+..|+....-+..+.+-+.+|..+.+.|+.+.+.+.+
T Consensus 167 v~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~ 214 (1163)
T COG1196 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER 214 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444445555555555555555555544333
No 19
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.00 E-value=0.1 Score=64.49 Aligned_cols=271 Identities=19% Similarity=0.242 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHH
Q 002095 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKEL---RRKHKQ 747 (967)
Q Consensus 671 ~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eL---r~k~~~ 747 (967)
+++.+.+.+.|-.++-..++.+..++-.|++++-.-| .+.-+|...|.++..++..+..|...++++ |...++
T Consensus 81 lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk----~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ 156 (717)
T PF09730_consen 81 LREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK----QSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEK 156 (717)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666677777777777777777776544 345577778888877777766665555443 444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhccccCCccccccccccCCCcc---ccCCCCCCCCcchhhhhhcc-
Q 002095 748 ELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLS---RKLSSASSLGSMEESHFLQA- 823 (967)
Q Consensus 748 elqea~~~~~~Lqq~lE~Ek~~r~elE~~~~~~s~~~s~q~~~~~~~s~f~~~s~t---r~lSs~sS~gs~~~s~~lq~- 823 (967)
++.++.. .|+.+.+...+.|.++.... +..+.. .. ..+...+.+.++. +....+...++....++...
T Consensus 157 qleEALe---sl~~EReqk~~LrkEL~~~~--~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 228 (717)
T PF09730_consen 157 QLEEALE---SLKSEREQKNALRKELDQHL--NIESIS-YL--SNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGP 228 (717)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhc--Cccccc-cc--cchhhcccccccccccccccCCCCchhhhcchhhccc
Confidence 6666652 45555554444444443311 110000 00 0000000000000 00000100000000000000
Q ss_pred -ccCC-CC-cccccCCCCCCCCCcc----cccCCC---hhHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002095 824 -SLDS-SD-SLSDRKNTVEPTMSPY----YVKSMT---PSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQ 893 (967)
Q Consensus 824 -s~d~-sd-~~s~~~~~g~~s~S~~----~~~s~t---pS~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~E 893 (967)
.... .| ..+.++.+...+..|. .|.-+. .-.|..+|-+.|.|.+.|..-|.-.+.+-+....+|...+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~ek 308 (717)
T PF09730_consen 229 GLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEK 308 (717)
T ss_pred hhcccccccccCCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0000000100011110 000000 126889999999999999999988888888877777777776
Q ss_pred HHHHHHHHhhhhhHHH----------------------------HHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHH
Q 002095 894 CEKLRAEAAILPGIQA----------------------------ELDALRRRHSAALELMGERDEELEELRADIMDLKEM 945 (967)
Q Consensus 894 nEel~~e~~~v~~Le~----------------------------eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeM 945 (967)
+..|.+.+.-+..+.. .++-|+.||..+..=++.--.++..|+..+..++.-
T Consensus 309 i~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~ 388 (717)
T PF09730_consen 309 INRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEER 388 (717)
T ss_pred HHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666544444311 023456788877766666666666666655555666
Q ss_pred HHHHHHHH
Q 002095 946 YREQVNLL 953 (967)
Q Consensus 946 YR~QIdeL 953 (967)
|+...+.+
T Consensus 389 ~~~ek~~~ 396 (717)
T PF09730_consen 389 YKQEKDRL 396 (717)
T ss_pred HHHHHHHH
Confidence 65554433
No 20
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.93 E-value=0.16 Score=64.32 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=49.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 362 ARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRRE 429 (967)
Q Consensus 362 ~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke 429 (967)
.+.|.++.++.-.|....-+|+.+++.++...-...+++++.-| ++...+++.+-..+.+.+++..+
T Consensus 1266 ~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~-~~s~ea~~r~~~s~~~l~s~~~~ 1332 (1758)
T KOG0994|consen 1266 GKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAY-EQSAEAERRVDASSRELASLVDQ 1332 (1758)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHH-HHHHHHHHhhhhhhhcccchhhh
Confidence 46677777888888888888999999888876667776666555 55666688887777777665444
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=97.93 E-value=0.15 Score=64.01 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 591 DMLRRDIEDLQRRYQASERRCEELV 615 (967)
Q Consensus 591 eeLR~EIs~Le~RLEeaEsRaEELS 615 (967)
..++.++..+..++..++...+.+.
T Consensus 408 ~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 408 SKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.86 E-value=0.19 Score=62.87 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002095 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVI 386 (967)
Q Consensus 343 e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~ 386 (967)
.+++....|.-|.+.++.+++.+..+.+.+-+|+...+.|+..+
T Consensus 108 ~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l 151 (775)
T PF10174_consen 108 ELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTL 151 (775)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555544444444444444333
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.84 E-value=0.2 Score=62.66 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHH
Q 002095 913 ALRRRHSAALELMGERDEELEELRADIMDLKEMYREQV 950 (967)
Q Consensus 913 eLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QI 950 (967)
++..|+..+=.-.....+.+..-+++|.=|-.|.+...
T Consensus 545 e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E 582 (775)
T PF10174_consen 545 ELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE 582 (775)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666666666554
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.83 E-value=0.16 Score=61.02 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHHH
Q 002095 728 EGRANQLEEEIKEL 741 (967)
Q Consensus 728 e~r~~~LEeeL~eL 741 (967)
..-+.+|+..|..+
T Consensus 444 ~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 444 LEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHh
Confidence 33466777777766
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.81 E-value=0.059 Score=58.20 Aligned_cols=84 Identities=24% Similarity=0.329 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHH
Q 002095 551 RAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIE 630 (967)
Q Consensus 551 ~~~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIE 630 (967)
+..++.+.....++...|..++.+.+..+..+. ++=++...-+..++..|+.++.|++.+-+ .|.
T Consensus 80 ~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e----~k~~E~~rkl~~~E~~Le~aEeR~e~~E~-----------ki~ 144 (237)
T PF00261_consen 80 RKVLENREQSDEERIEELEQQLKEAKRRAEEAE----RKYEEVERKLKVLEQELERAEERAEAAES-----------KIK 144 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHCHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhch-----------hHH
Confidence 345566655556666666666666665554433 22333444555566666666666666644 566
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 631 AIQETTARRAEAWAAVERS 649 (967)
Q Consensus 631 tLQ~q~asqsenWe~iE~s 649 (967)
.|+..+..-..++..+|.+
T Consensus 145 eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 6666666655555554443
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.78 E-value=0.34 Score=63.53 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 396 AELETLREEYHQRVATLERKVYALTKERDTLR 427 (967)
Q Consensus 396 ~~~~~L~eEy~qRI~aLErKlq~L~KErD~LK 427 (967)
..+..++++|..+++++...+.....+.+.+.
T Consensus 302 ~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~ 333 (1201)
T PF12128_consen 302 DEIKELRDELNKELSALNADLARIKSELDEIE 333 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666778888888888888877777776553
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.77 E-value=0.026 Score=60.88 Aligned_cols=71 Identities=27% Similarity=0.437 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 582 TEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQE 656 (967)
Q Consensus 582 aeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~e 656 (967)
....+..+++.+...|..|..+|..++.|++.+-..+. +|-++|..|...+.........+...|-.=+.+
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~----~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVK----KLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666778999999999999999999999999976554 678888888888887777777777666554443
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.72 E-value=0.4 Score=62.64 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=21.0
Q ss_pred HHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002095 439 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (967)
Q Consensus 439 ~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEe 480 (967)
.+.+.+..|..+...=..+-.........++++..++...+.
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444444444444444444333
No 29
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.60 E-value=0.33 Score=58.36 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 348 KREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLR 427 (967)
Q Consensus 348 ~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LK 427 (967)
+++|..|+--|- .-=+.|-.|..+|--|..+|..|+..-. .+...++.=|---|..+=+-+....+++..+.
T Consensus 41 K~El~~LNDRLA-------~YIekVR~LEaqN~~L~~di~~lr~~~~-~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e 112 (546)
T KOG0977|consen 41 KKELQELNDRLA-------VYIEKVRFLEAQNRKLEHDINLLRGVVG-RETSGIKAKYEAELATARKLLDETARERAKLE 112 (546)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 467777776554 3456677888899999999998888652 55667888888888888877777777776554
Q ss_pred HHh
Q 002095 428 REQ 430 (967)
Q Consensus 428 ke~ 430 (967)
.++
T Consensus 113 ~ei 115 (546)
T KOG0977|consen 113 IEI 115 (546)
T ss_pred HHH
Confidence 443
No 30
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.59 E-value=0.52 Score=60.39 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=3.8
Q ss_pred hcccCCCCC
Q 002095 65 FMGHKSEGS 73 (967)
Q Consensus 65 ~~~~~~~~~ 73 (967)
|.|..|.+.
T Consensus 28 i~G~NGsGK 36 (1164)
T TIGR02169 28 ISGPNGSGK 36 (1164)
T ss_pred EECCCCCCH
Confidence 334444444
No 31
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.50 E-value=2.3e-05 Score=97.85 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHH---HHHHHHHHHHHHHHhc
Q 002095 903 ILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKE---MYREQVNLLVNKIQVM 960 (967)
Q Consensus 903 ~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKe---MYR~QIdeLlkQi~~L 960 (967)
+|..|+.+|+.=+.+|..+.-.+---.-.|-||...+.+=+. -|+.+|+.+-..|..+
T Consensus 751 ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~ 811 (859)
T PF01576_consen 751 RIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQL 811 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778877888888888888888888899888888774 5667777765555444
No 32
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.48 E-value=0.25 Score=59.34 Aligned_cols=106 Identities=22% Similarity=0.349 Sum_probs=52.4
Q ss_pred HHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 002095 514 IEKHQVEL-GEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFR--- 589 (967)
Q Consensus 514 iek~q~eL-~a~k~~~~~~L~~AKe~e~lAE~ra~~Ea~~~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~r--- 589 (967)
....+.+. .....+|.+.|..| +.+.|++-++-..- -.++ =+..++..|..++....+........
T Consensus 228 ~~~~~rd~t~~~r~~F~~eL~~A-----i~eiRaqye~~~~~--nR~d---iE~~Y~~kI~~i~~~~~~~~~~~~~~rEE 297 (546)
T KOG0977|consen 228 RRKARRDTTADNREYFKNELALA-----IREIRAQYEAISRQ--NRKD---IESWYKRKIQEIRTSAERANVEQNYAREE 297 (546)
T ss_pred HHHHhhcccccchHHHHHHHHHH-----HHHHHHHHHHHHHH--hHHH---HHHHHHHHHHHHHhhhccccchhHHHHHH
Confidence 33444444 33556777777553 44555554431111 1111 12245556666665544433222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHH
Q 002095 590 EDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRA 640 (967)
Q Consensus 590 EeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqs 640 (967)
-.++|..|..|..|+-++|.|+-- |.+||+.|.-++..-.
T Consensus 298 l~~~R~~i~~Lr~klselE~~n~~-----------L~~~I~dL~~ql~e~~ 337 (546)
T KOG0977|consen 298 LRRIRSRISGLRAKLSELESRNSA-----------LEKRIEDLEYQLDEDQ 337 (546)
T ss_pred HHHHHhcccchhhhhccccccChh-----------HHHHHHHHHhhhhhhh
Confidence 122345666666666655555544 4558888877766533
No 33
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.47 E-value=0.73 Score=59.27 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQ 430 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~ 430 (967)
.+....++|.+....|+.+...|++.. .+=...-..+|.++++..+.+.+-|.++.-+++.+.
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q-~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eel 524 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQ-KALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEEL 524 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777666511 111111234555677777777766666665555543
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.47 E-value=0.47 Score=57.06 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 449 QVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 449 qLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk 486 (967)
.|+.+-..+-....+++..|+-|..+..+.++.+..++
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555566666666655555555544
No 35
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.46 E-value=0.58 Score=57.70 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 610 RCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQI 689 (967)
Q Consensus 610 RaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~el 689 (967)
+.++...=+..+-.+|-|||-.+|-.+-.+.-+-++ |..++.++|++++.|...-|.++++... .+.++
T Consensus 313 dseqatkylh~enmkltrqkadirc~LlEarrk~eg----fddk~~eLEKkrd~al~dvr~i~e~k~n-------ve~el 381 (1265)
T KOG0976|consen 313 DSEQATKYLHLENMKLTRQKADIRCALLEARRKAEG----FDDKLNELEKKRDMALMDVRSIQEKKEN-------VEEEL 381 (1265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHH
Confidence 444444434455567778998998888888877765 5667789999999888776666665443 33444
Q ss_pred HHHHHHHHHHHHHHH
Q 002095 690 SCLRAEQTQLTKSLE 704 (967)
Q Consensus 690 s~lr~E~~~L~~qLE 704 (967)
..+...+..++.|++
T Consensus 382 qsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 382 QSLLELQAERQEQID 396 (1265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.82 Score=58.62 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHH
Q 002095 863 EGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDL 942 (967)
Q Consensus 863 EGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DV 942 (967)
.+-++..+..+.++++.+..+..|+-.|+.+. .+++....+++.+|..+.+.+-|--++...|+.++.++
T Consensus 934 ~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~----------~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i 1003 (1293)
T KOG0996|consen 934 DRNIAKAQKKLSELEREIEDTEKELDDLTEEL----------KGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENI 1003 (1293)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667766666666666666433 33444445577777777777777666666666666666
Q ss_pred HHHHHHH
Q 002095 943 KEMYREQ 949 (967)
Q Consensus 943 KeMYR~Q 949 (967)
+.+|...
T Consensus 1004 ~k~~~~l 1010 (1293)
T KOG0996|consen 1004 KKSENEL 1010 (1293)
T ss_pred HHHHHHH
Confidence 6666554
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.41 E-value=0.71 Score=57.65 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002095 652 LRLQEAEAKAAASEERER---SVNERLSQTLSRINVLEAQISCL 692 (967)
Q Consensus 652 ~RL~elE~kl~~A~erEr---~~~ekl~~~~~ri~~LE~els~l 692 (967)
..|++++.+.++|.=-|. -+.++-.++..|++.||+.+..+
T Consensus 431 s~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dl 474 (1243)
T KOG0971|consen 431 STIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDL 474 (1243)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHH
Confidence 345666666666555443 12223344566667777666543
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.86 Score=58.43 Aligned_cols=89 Identities=24% Similarity=0.321 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002095 402 REEYHQRVATLERKVYALTKERDTLRREQN-KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (967)
Q Consensus 402 ~eEy~qRI~aLErKlq~L~KErD~LKke~~-k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEe 480 (967)
+..|..-|..+.+.|-.|...+..-..-.. ......++=..|++-|.-|+.|-+-+=++-.....+|=-.|+++.....
T Consensus 262 T~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~ 341 (1293)
T KOG0996|consen 262 TNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQE 341 (1293)
T ss_pred ccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544431111000 0012223445677888888888888766655555556557777777776
Q ss_pred HHHHHHhHHH
Q 002095 481 EKKGLVTKLQ 490 (967)
Q Consensus 481 e~k~Lk~KlE 490 (967)
++..+...+.
T Consensus 342 ~~~~~~e~lk 351 (1293)
T KOG0996|consen 342 ELEKIEEGLK 351 (1293)
T ss_pred HHHHHHhHHH
Confidence 6666655433
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.23 E-value=1.1 Score=55.90 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--h----HHHHHHh-hHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002095 407 QRVATLERKVYALTKERDTLRREQNKK--S----DAAALLK-EKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELE 479 (967)
Q Consensus 407 qRI~aLErKlq~L~KErD~LKke~~k~--s----~~~a~Lk-EKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElE 479 (967)
+=|..||+||....+-|..+-+++... . ...+.-+ -.-.-+.+ +-|+-+=....++++-||+||..++..|
T Consensus 488 q~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~--e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 488 QSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ--ECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999988887777665554311 1 0000000 00000111 4555565566777788888888888888
Q ss_pred HHHHHHHhHH
Q 002095 480 EEKKGLVTKL 489 (967)
Q Consensus 480 ee~k~Lk~Kl 489 (967)
+.+..|...+
T Consensus 566 e~~~~~e~~~ 575 (697)
T PF09726_consen 566 EQIRELESEL 575 (697)
T ss_pred HHHHHHHHHH
Confidence 8777776544
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.18 E-value=1.2 Score=56.96 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=25.8
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 002095 431 NKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRA 473 (967)
Q Consensus 431 ~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRa 473 (967)
.+...+...|.++..+|..++.|+..-...-......++.+|.
T Consensus 309 ~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 309 GKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3444555677788888888888877665544444344444333
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.09 E-value=0.8 Score=56.98 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 002095 463 AQEAQIRKLRAQIREL 478 (967)
Q Consensus 463 q~sniIKKLRakikEl 478 (967)
+++.-|||||+.+.-.
T Consensus 422 rLE~dvkkLraeLq~~ 437 (697)
T PF09726_consen 422 RLEADVKKLRAELQSS 437 (697)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6778888888876543
No 42
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.07 E-value=1.9 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=21.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 002095 901 AAILPGIQAELDALRRRHSAALELMGE 927 (967)
Q Consensus 901 ~~~v~~Le~eleeLqqRYeTlLELLGE 927 (967)
+..+.+|+.-+..+.-||+..++|+-.
T Consensus 1023 v~~L~qlr~~l~k~~l~~q~~~d~~~~ 1049 (1317)
T KOG0612|consen 1023 VMELSQLRTKLNKLRLKNQKELDLQAQ 1049 (1317)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 556777777888888888888887776
No 43
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.06 E-value=1.7 Score=55.15 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=17.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 363 RQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 363 r~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
.++.-|+..+-.|.++.|+|++++..|+-
T Consensus 191 qElEEK~enll~lr~eLddleae~~klrq 219 (1195)
T KOG4643|consen 191 QELEEKFENLLRLRNELDDLEAEISKLRQ 219 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345565666666666666666666554
No 44
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.01 E-value=0.92 Score=51.20 Aligned_cols=132 Identities=24% Similarity=0.363 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 345 EKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERD 424 (967)
Q Consensus 345 ~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD 424 (967)
+-|..+|..|.+..---...+...--..+.|.+.|..|+..-..+..+. +. -+||+- -.|=+|++.|.+|.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a-Eq-----EEE~is--N~LlKkl~~l~keKe 94 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA-EQ-----EEEFIS--NTLLKKLQQLKKEKE 94 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHH--HHHHHHHHHHHHHHH
Confidence 6666777777664332233444444556667777777776666555543 12 356653 345667777777777
Q ss_pred HHHHHhhhhhH-HHHHHhhHHHHHHHHHHHhHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 425 TLRREQNKKSD-AAALLKEKDEIINQVMAEGEELSKK-QAAQEAQIRKLRAQIRELEEEKKGLVT 487 (967)
Q Consensus 425 ~LKke~~k~s~-~~a~LkEKDE~IaqLmEEGEKLSKk-ELq~sniIKKLRakikElEee~k~Lk~ 487 (967)
.|-..+.+... +...|-- .|.+|+.|--.|-.+ +..++..|-||+.+|..++.+...+..
T Consensus 95 ~L~~~~e~EEE~ltn~L~r---kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~ 156 (310)
T PF09755_consen 95 TLALKYEQEEEFLTNDLSR---KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQE 156 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 76554443211 1111111 233333333333222 223556677777777777766655443
No 45
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.87 E-value=0.00025 Score=88.79 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e 900 (967)
.+...++.+.+|+..++..+...++.|..+..|+..+..++..+...
T Consensus 606 ~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~ 652 (859)
T PF01576_consen 606 VSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQ 652 (859)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667778889999999989888888888888888887777776543
No 46
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.86 E-value=0.012 Score=72.72 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=16.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002095 931 ELEELRADIMDLKEMYREQVNLLVNKIQ 958 (967)
Q Consensus 931 eVEELraDV~DVKeMYR~QIdeLlkQi~ 958 (967)
+|+.+..-..=||++|...+.+.-.=+-
T Consensus 614 ~~~~~ekr~~RLkevf~~ks~eFr~av~ 641 (722)
T PF05557_consen 614 ELASAEKRNQRLKEVFKAKSQEFREAVY 641 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445577788777766644443
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=2.2 Score=52.79 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=56.3
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hh----HHHHHHHHHHHHHHHHHHhcc
Q 002095 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAIL-PG----IQAELDALRRRHSAALELMGE 927 (967)
Q Consensus 853 S~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v-~~----Le~eleeLqqRYeTlLELLGE 927 (967)
+.|.+..+.++-=+.++++.+..|+.+...--.||-.+-++..+|++.+... -. .+.+..-|.+-.--.|+|+|+
T Consensus 531 s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ 610 (1118)
T KOG1029|consen 531 SELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGE 610 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777778877888899999999888888888888888888888766331 11 222333444444568899998
Q ss_pred chhH
Q 002095 928 RDEE 931 (967)
Q Consensus 928 KsEe 931 (967)
|..+
T Consensus 611 ke~e 614 (1118)
T KOG1029|consen 611 KEAE 614 (1118)
T ss_pred hhhc
Confidence 8765
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.81 E-value=2 Score=52.14 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQ 585 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~ 585 (967)
+..+...|...+.+..+.
T Consensus 322 ~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 322 AKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 333444444444444333
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.78 E-value=1.3 Score=49.27 Aligned_cols=89 Identities=16% Similarity=0.289 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002095 647 ERSLNLRLQEAEAKAAASEER-----ERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAK 721 (967)
Q Consensus 647 E~sL~~RL~elE~kl~~A~er-----Er~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aak 721 (967)
...|..-|.+...+-+....+ +.....++..+..........+..++.++..++..+..-.
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~-------------- 229 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQ-------------- 229 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhh--------------
Confidence 334556666655444433322 2233445555555555555555556666555555554322
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002095 722 EEADTQEGRANQLEEEIKELRRKHKQEL 749 (967)
Q Consensus 722 ee~~~le~r~~~LEeeL~eLr~k~~~el 749 (967)
.++..+..+...|+..+..++..+..++
T Consensus 230 ~el~~l~~~~~~Le~~l~~le~~~~~~~ 257 (312)
T PF00038_consen 230 AELESLRAKNASLERQLRELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhhhhhHHHHHHHHHHHH
Confidence 3333444444455555555544444433
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.72 E-value=2.3 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 002095 339 DSVCELEKLKREMKMMETALQGA 361 (967)
Q Consensus 339 ~~~~e~~kl~~~~~~~~~~l~~~ 361 (967)
....+|.++++++..+...|..+
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~ 53 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAA 53 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888777777766
No 51
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.71 E-value=2.5 Score=51.83 Aligned_cols=120 Identities=28% Similarity=0.441 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKS 702 (967)
Q Consensus 623 rPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~q 702 (967)
-.+++||+.|..+-..-....+.+=.-|..+-.+++.+++.....-|...-.......+++.++..+..+|. +
T Consensus 530 e~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK-------q 602 (786)
T PF05483_consen 530 EKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK-------Q 602 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH-------H
Confidence 357899999999888888888877777777778888877765555454444444444455555555555554 3
Q ss_pred HHHHHHHHHHhHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002095 703 LEKERQRAAENRQEYLAAK-------EEADTQEGRANQLEEEIKELRRKHKQEL 749 (967)
Q Consensus 703 LE~Er~r~~~~r~e~~aak-------ee~~~le~r~~~LEeeL~eLr~k~~~el 749 (967)
++.........+++-.+.+ ..+..++.++..|+.++..++..|....
T Consensus 603 vEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~ 656 (786)
T PF05483_consen 603 VENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEET 656 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3322222222222222222 2334455666677777777666665433
No 52
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.57 E-value=3.6 Score=51.83 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 002095 340 SVCELEKLKREMKMMETALQGA 361 (967)
Q Consensus 340 ~~~e~~kl~~~~~~~~~~l~~~ 361 (967)
|-.+++ |+..++.|+.-|+..
T Consensus 223 skte~e-Lr~QvrdLtEkLetl 243 (1243)
T KOG0971|consen 223 SKTEEE-LRAQVRDLTEKLETL 243 (1243)
T ss_pred ccchHH-HHHHHHHHHHHHHHH
Confidence 444555 999999999999974
No 53
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=2.8 Score=50.38 Aligned_cols=97 Identities=29% Similarity=0.384 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHH
Q 002095 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKE---LRRKHKQ 747 (967)
Q Consensus 671 ~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~e---Lr~k~~~ 747 (967)
++..+.+.+-|-.+|-.+++.+-.++-.|+.++-.-| .+.-+|.-+|.++..++..+.-|...+++ |+..-.+
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR----~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAek 229 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR----QSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEK 229 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555433 34456677777777666665444444433 2333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002095 748 ELQEALMHRELLQQEIEREKTARVDLE 774 (967)
Q Consensus 748 elqea~~~~~~Lqq~lE~Ek~~r~elE 774 (967)
++.++. .-++++.+...+.+.++.
T Consensus 230 QlEEAL---eTlq~EReqk~alkkEL~ 253 (772)
T KOG0999|consen 230 QLEEAL---ETLQQEREQKNALKKELS 253 (772)
T ss_pred HHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 444443 224444444333333443
No 54
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.42 E-value=0.62 Score=47.12 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 595 RDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNER 674 (967)
Q Consensus 595 ~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ek 674 (967)
.+|..|+.|+..++...+.+.. ++..++..+......-...| +|+.||.-++..++.+..+-+.+.++
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~-----------~l~~~k~~lee~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ek 102 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEE-----------QLKEAKEKLEESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEK 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544 23333333333333333334 89999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 675 LSQTLSRINVLEAQISCLR 693 (967)
Q Consensus 675 l~~~~~ri~~LE~els~lr 693 (967)
++.+..++..++-+...+.
T Consensus 103 l~e~d~~ae~~eRkv~~le 121 (143)
T PF12718_consen 103 LREADVKAEHFERKVKALE 121 (143)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 8888877777776665543
No 55
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=4.1 Score=50.69 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 648 RSLNLRLQEAEAKAAASEERERSVNERLSQT 678 (967)
Q Consensus 648 ~sL~~RL~elE~kl~~A~erEr~~~ekl~~~ 678 (967)
..|.+||.+++.++--..-.-..++.++...
T Consensus 489 ~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 489 DQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 4577888888776655555445566655444
No 56
>PRK11637 AmiB activator; Provisional
Probab=96.39 E-value=3 Score=48.85 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 407 QRVATLERKVYALTKERD 424 (967)
Q Consensus 407 qRI~aLErKlq~L~KErD 424 (967)
++|..+++.++.+.++..
T Consensus 47 ~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 57
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.38 E-value=4.1 Score=50.31 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHH
Q 002095 874 ASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLL 953 (967)
Q Consensus 874 arLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeL 953 (967)
.++...|+....|+-.|......|+..+. .-...+..+.....++-.=|.|..+...+||-++.-..+.|-.=.+.-
T Consensus 503 qeV~~ArEqgeaE~~~Lse~aqqLE~~Lq---~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqek 579 (739)
T PF07111_consen 503 QEVGRAREQGEAERQQLSEVAQQLEQELQ---EKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEK 579 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888999999988888887654 346667788889999999999999999999999999999987555544
Q ss_pred HHH
Q 002095 954 VNK 956 (967)
Q Consensus 954 lkQ 956 (967)
|..
T Consensus 580 vse 582 (739)
T PF07111_consen 580 VSE 582 (739)
T ss_pred HHH
Confidence 443
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.21 E-value=3.8 Score=48.22 Aligned_cols=42 Identities=33% Similarity=0.359 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 445 EIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 445 E~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk 486 (967)
.++.+...+=++++++.-.....-.||..+|++++.++..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~ 79 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLE 79 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443
No 59
>PRK01156 chromosome segregation protein; Provisional
Probab=96.11 E-value=6.6 Score=50.04 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 591 DMLRRDIEDLQRRYQASERRCEELV 615 (967)
Q Consensus 591 eeLR~EIs~Le~RLEeaEsRaEELS 615 (967)
+.|..++..|..+...++....++.
T Consensus 419 ~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 419 QDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444444
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.10 E-value=7.2 Score=50.45 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 627 RQIEAIQETTARRAEAWAAVERSLNL 652 (967)
Q Consensus 627 RQIEtLQ~q~asqsenWe~iE~sL~~ 652 (967)
.||+.|-.+...+-++-..++.-|..
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~ 1536 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSR 1536 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 58888888888888888888877753
No 61
>PRK11637 AmiB activator; Provisional
Probab=96.07 E-value=4.3 Score=47.55 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=8.7
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 002095 725 DTQEGRANQLEEEIKELRR 743 (967)
Q Consensus 725 ~~le~r~~~LEeeL~eLr~ 743 (967)
..++.....|...|..+..
T Consensus 236 ~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 236 SELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444445555554433
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.03 E-value=7.2 Score=49.87 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002095 349 REMKMMETALQGAARQAQAKADEIAKMMNENEH 381 (967)
Q Consensus 349 ~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~ 381 (967)
..|+.+.+-+.|++.|...|.--|+.++..+=+
T Consensus 43 e~ik~ll~llLg~avqcp~kelfi~riq~ldle 75 (1195)
T KOG4643|consen 43 EAIKQLLQLLLGSAVQCPTKELFIQRIQILDLE 75 (1195)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHhhhhH
Confidence 567888889999999988888888877655443
No 63
>PRK11281 hypothetical protein; Provisional
Probab=96.03 E-value=8.4 Score=50.61 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-C-----CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 592 MLRRDIEDLQRRYQASERRCEELVTQV-P-----ESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASE 665 (967)
Q Consensus 592 eLR~EIs~Le~RLEeaEsRaEELSssv-s-----eATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~ 665 (967)
.|+..+.+.-++++.+..+.+.+.... + -...++ +|+|+..++....-..|+.-=..++++|..++++-+.|+
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl-~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ 162 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ 162 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 344444444445555555555444321 1 123334 889999999999999999999999999999998777766
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 666 ERERSVNERLSQTLSRIN 683 (967)
Q Consensus 666 erEr~~~ekl~~~~~ri~ 683 (967)
.+-.+.+.++.++..+++
T Consensus 163 ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 163 AALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 665556666655554443
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.03 E-value=9.9 Score=51.39 Aligned_cols=97 Identities=25% Similarity=0.334 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 588 FREDMLRRDIEDLQRRYQA---SERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAAS 664 (967)
Q Consensus 588 ~rEeeLR~EIs~Le~RLEe---aEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A 664 (967)
.+...++....+|+++++. ++....++....+ .+-+=--.++.|+.. +-.+|.++......+
T Consensus 513 ~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 577 (1486)
T PRK04863 513 EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLG-KNLDDEDELEQLQEE--------------LEARLESLSESVSEA 577 (1486)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 3456677777888876653 5555555544211 000001233333332 233456666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 665 EERERSVNERLSQTLSRINVLEAQISCLRAEQTQL 699 (967)
Q Consensus 665 ~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L 699 (967)
.++-..++.++..+..++..++.....+.+-...|
T Consensus 578 ~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al 612 (1486)
T PRK04863 578 RERRMALRQQLEQLQARIQRLAARAPAWLAAQDAL 612 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHH
Confidence 66667777788888888888877776665544443
No 65
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.00 E-value=1.1 Score=44.42 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 553 ELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEE 613 (967)
Q Consensus 553 ~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEE 613 (967)
.++..+..+......|+..++..+..|...+..|..++..|..+|..++.||.++...|-=
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~l 123 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKL 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555567778888888888888888888888889998888888877765543
No 66
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.87 E-value=7.4 Score=48.68 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHhhHHHHHH
Q 002095 410 ATLERKVYALTKERDTLRREQNKKS-DAAALLKEKDEIIN 448 (967)
Q Consensus 410 ~aLErKlq~L~KErD~LKke~~k~s-~~~a~LkEKDE~Ia 448 (967)
-.++..|+.+..|+..++++...+. .+...+.+||++-.
T Consensus 179 t~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sl 218 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSL 218 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 3334444444444444444333221 23345556665443
No 67
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.77 E-value=6.7 Score=47.43 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=18.0
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 002095 930 EELEELRADIMDLKEMYREQVNLLVNKIQVMG 961 (967)
Q Consensus 930 EeVEELraDV~DVKeMYR~QIdeLlkQi~~L~ 961 (967)
++-+.|.--+.+.-++-+.-|.--+.||+...
T Consensus 463 eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak 494 (522)
T PF05701_consen 463 EEYESLSKKAEEAEELAEKKVAAAMAQVEAAK 494 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666665555555555555554443
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.61 E-value=6.8 Score=46.85 Aligned_cols=15 Identities=13% Similarity=0.260 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhh
Q 002095 509 LLQETIEKHQVELGE 523 (967)
Q Consensus 509 ~lqe~iek~q~eL~a 523 (967)
...+.+..++.++..
T Consensus 171 ~~k~~~~e~~~~i~~ 185 (562)
T PHA02562 171 LNKDKIRELNQQIQT 185 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444455555543
No 69
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.49 E-value=7.3 Score=45.95 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTK 421 (967)
Q Consensus 342 ~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~K 421 (967)
-.|+..+++|..++..|.....+.+.+.++++.+...+..+..++-..... ..++-.+|+.++..+..|-.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~---------l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD---------LKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHhhHHHHHHHHHHHHH
Confidence 457788888888888888877777788888888888888887777654332 34556888888888876655
Q ss_pred HH
Q 002095 422 ER 423 (967)
Q Consensus 422 Er 423 (967)
+.
T Consensus 109 q~ 110 (420)
T COG4942 109 QE 110 (420)
T ss_pred HH
Confidence 54
No 70
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.47 E-value=0.008 Score=74.14 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002095 351 MKMMETALQGAARQAQAKADEIAKMMN 377 (967)
Q Consensus 351 ~~~~~~~l~~~~r~~~~k~~~~a~L~e 377 (967)
|.-|=.-+.|+|.+-..|..-|..++.
T Consensus 111 l~kLL~LlLgcAV~c~~ke~yI~~I~~ 137 (713)
T PF05622_consen 111 LKKLLQLLLGCAVQCENKEEYIQRIME 137 (713)
T ss_dssp HHHHHHHHHHHTTSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHC
Confidence 333444566777666666666666654
No 71
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.26 E-value=5.7 Score=43.28 Aligned_cols=101 Identities=21% Similarity=0.364 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cCchHHHHHHHHHHHHHHHHHHHHHH
Q 002095 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPE----STRPLLRQIEAIQETTARRAEAWAAV 646 (967)
Q Consensus 571 qIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvse----ATrPLLRQIEtLQ~q~asqsenWe~i 646 (967)
.|..++..+ +.....+...+..-+..|..||..++....+-....+. -...|.++|..|+..+..-..+|..-
T Consensus 71 ~i~~~~~~v---~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~er 147 (247)
T PF06705_consen 71 QINNMQERV---ENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREER 147 (247)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333 23344455556666666666666666655555544332 24568889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 647 ERSLNLRLQEAEAKAAASEERERSVNER 674 (967)
Q Consensus 647 E~sL~~RL~elE~kl~~A~erEr~~~ek 674 (967)
|..+..||.+....+.....+|+..++.
T Consensus 148 E~~i~krl~e~~~~l~~~i~~Ek~~Re~ 175 (247)
T PF06705_consen 148 EENILKRLEEEENRLQEKIEKEKNTRES 175 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877773
No 72
>PRK09039 hypothetical protein; Validated
Probab=95.13 E-value=1.9 Score=49.35 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRC 611 (967)
Q Consensus 554 Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRa 611 (967)
|...+...+.....|..+|.+|-+.|.-...+. ..|..++..|+.++..++.+-
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~----~~l~~~l~~l~~~l~~a~~~r 97 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGN----QDLQDSVANLRASLSAAEAER 97 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555444443322221 223444444444444444433
No 73
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.88 E-value=14 Score=45.78 Aligned_cols=94 Identities=14% Similarity=0.346 Sum_probs=49.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELE 933 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVE 933 (967)
.|+..+..+++-...+..+.+.|.-....|.--++.|..+.|.....+.-+..-+ .-+..|+.--=+.++-=+..-|
T Consensus 411 aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly~~qr---~~~k~r~~e~~~~i~~l~~~~e 487 (617)
T PF15070_consen 411 ALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLYQSQR---AVLKQRHQEKEEYISRLAQDRE 487 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccccccc---cccchhHHHHHHHHHHHHHHHH
Confidence 4566666666656666666666666666666666666666666665543322211 2333343322112222233445
Q ss_pred HHHHhHHHHHHHHHHHH
Q 002095 934 ELRADIMDLKEMYREQV 950 (967)
Q Consensus 934 ELraDV~DVKeMYR~QI 950 (967)
+++.-|..|.+|.-.++
T Consensus 488 ~mk~kl~elq~lv~~l~ 504 (617)
T PF15070_consen 488 EMKVKLLELQELVLRLV 504 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666766665555
No 74
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.85 E-value=18 Score=46.92 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002095 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKEL 741 (967)
Q Consensus 671 ~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eL 741 (967)
+.+++..+..++..++.++..|+.+...+...+.....++. ..+.....+..+++.-...|+.+
T Consensus 399 ~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~-------~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 399 RENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE-------HIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666667777778887777777776665544332211 12233344444444454555544
No 75
>PRK01156 chromosome segregation protein; Provisional
Probab=94.73 E-value=18 Score=46.26 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALE 923 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLE 923 (967)
.+...+..+.+++..+...++.+......+...|-.+-.+.+.++.....+..++.-+..| .+|..+|.
T Consensus 678 ~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~~l-~~~r~~l~ 746 (895)
T PRK01156 678 DIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDL-KRLREAFD 746 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 3445555566666666666666666666666666666666665555555555555444443 34444444
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.56 E-value=5.2 Score=42.63 Aligned_cols=137 Identities=26% Similarity=0.344 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHH---HHHHHHH
Q 002095 342 CELEKLKREMKMMETALQGA---ARQAQAKADEIAKMMNENEHLKAVIEDLKRK--TNDAELETLREEYH---QRVATLE 413 (967)
Q Consensus 342 ~e~~kl~~~~~~~~~~l~~~---~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~--~~~~~~~~L~eEy~---qRI~aLE 413 (967)
.|+..|++.++++...++.| .-.+..+---...|++.|..|.++.-.+.+. +=.+.|..|.++-. .-++-+.
T Consensus 43 ~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 43 EEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 47888888888888888877 3334443334445566666665555544442 11234445554433 4456677
Q ss_pred HHHHHHHHHHHHHHHHhh----hhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 414 RKVYALTKERDTLRREQN----KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (967)
Q Consensus 414 rKlq~L~KErD~LKke~~----k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~L 485 (967)
++...|+.+.++|++++- -.+...+.+-++...|.. |-+.--..+.++--||.+|..+|+.+..+
T Consensus 123 ~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e-------L~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 123 KRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE-------LKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777888888888877762 123334566666666655 55666778888899999999998877543
No 77
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.25 E-value=18 Score=44.39 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002095 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQ 727 (967)
Q Consensus 670 ~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~l 727 (967)
...+........|+.++.++...+.++..|..+|+. +..|...|.++..|
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~--------~sDYeeIK~ELsiL 356 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKEKLNS--------RSDYEEIKKELSIL 356 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccHHHHHHHHHHH
Confidence 344444555667788888888888887777777764 24455555555443
No 78
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.06 E-value=0.042 Score=68.04 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=37.5
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhH
Q 002095 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEE 931 (967)
Q Consensus 857 A~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEe 931 (967)
++|..+..|+..|...|..|+..-... ..++-. ..+......+..|+.++..++.|..-+-++|+.|+-+
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~-~~~~p~----~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~e 635 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQP-VDAVPT----SSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQE 635 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCC-cccccc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443322211 112211 1122222357889999999999999999999988754
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.00 E-value=6.5 Score=39.89 Aligned_cols=119 Identities=17% Similarity=0.303 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHH
Q 002095 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQ 633 (967)
Q Consensus 554 Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ 633 (967)
++.+++.+..+...+-.+|..|..++... ..++..++.++..+....++.....+.+. -|-|-|..|.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~l-----------E~eld~~~~~l~~~k~~lee~~~~~~~~E-~l~rriq~LE 86 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQL-----------EEELDKLEEQLKEAKEKLEESEKRKSNAE-QLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHhhHHHHH
Confidence 44444555554445555666666666443 33344444444444444444433222111 4445554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 634 ETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKS 702 (967)
Q Consensus 634 ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~q 702 (967)
..+ ..++..+..+..+-+.+..++....-++..|+.+...+-..+..|..+
T Consensus 87 eel------------------e~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 87 EEL------------------EEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHH------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 443 444444455555555555555555555666666665555554444433
No 80
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.95 E-value=21 Score=44.76 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRT 582 (967)
Q Consensus 568 L~qqIedLRe~L~Ra 582 (967)
|..++.++|..|..+
T Consensus 199 L~~ql~~l~~~l~~a 213 (754)
T TIGR01005 199 LAPEIADLSKQSRDA 213 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555544
No 81
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.94 E-value=10 Score=40.51 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHH
Q 002095 578 TLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAV 646 (967)
Q Consensus 578 ~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~i 646 (967)
.|...++.+..+++.+..+|..|-.||.++++|++-+.-+| ++|-++|+-|+.-+.....-+..+
T Consensus 127 ~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsV----akLeke~DdlE~kl~~~k~ky~~~ 191 (205)
T KOG1003|consen 127 SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRV----AKLEKERDDLEEKLEEAKEKYEEA 191 (205)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHH----HHHcccHHHHHHhhHHHHHHHHHH
Confidence 34566777788899999999999999999999999987544 356666766665555544443333
No 82
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.80 E-value=7.8 Score=38.52 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 594 RRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (967)
Q Consensus 594 R~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL 650 (967)
+.++..|+..+..+..+...+.. ++..++.-+......|...+.++
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~-----------~~~~~~~dl~~q~~~a~~Aq~~Y 47 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEE-----------QLQSLREDLESQAKIAQEAQQKY 47 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555433 56666666677777776666665
No 83
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.67 E-value=16 Score=41.65 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHH----------------
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTN--DAELETLREEY---------------- 405 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~--~~~~~~L~eEy---------------- 405 (967)
++-+-+=+.+.+.-|+.|||-=|++..++..|++.|..|-.++......-. .-+| ++++++
T Consensus 64 idavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL-~~kdeLL~~ys~~~ee~~~~~~ 142 (306)
T PF04849_consen 64 IDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL-SMKDELLQIYSNDDEESEPESS 142 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHhhhcccccC
Confidence 333444466678888888888888888888888888776655533222100 0000 011111
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---------------HHHHhhHHHHHHHHHHHh
Q 002095 406 ----------------HQRVATLERKVYALTKERDTLRREQNKKSDA---------------AALLKEKDEIINQVMAEG 454 (967)
Q Consensus 406 ----------------~qRI~aLErKlq~L~KErD~LKke~~k~s~~---------------~a~LkEKDE~IaqLmEEG 454 (967)
.--+++|++|++.|-.|+..||.+..+...- .+.|.+-..+|+.|-+|=
T Consensus 143 ~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseEL 222 (306)
T PF04849_consen 143 ESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEEL 222 (306)
T ss_pred CCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 1237999999999999999999987754321 235555566666666654
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 455 EELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 455 EKLSKkELq~sniIKKLRakikElEee~k~Lk 486 (967)
.+-.-.-..+..-|-.|.++|-+++..++.+.
T Consensus 223 a~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~ 254 (306)
T PF04849_consen 223 ARKTEENRRQQEEITSLLSQIVDLQQRCKQLA 254 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555566666666666666555554
No 84
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.42 E-value=25 Score=43.07 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTA 637 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~a 637 (967)
...++..++..|... ...+..-|.+|..|..+++.++...-.-+-+-|.|-.+|=.|+..+...+.
T Consensus 117 ~e~~~~~i~~~l~~l----~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~ 182 (569)
T PRK04778 117 IEEDIEQILEELQEL----LESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFS 182 (569)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHH
Confidence 334455555555322 333556777888888888888777777777777776666555555555443
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.28 E-value=16 Score=40.39 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHH
Q 002095 551 RAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIE 630 (967)
Q Consensus 551 ~~~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIE 630 (967)
...|+..+.++.+....|..++.+|+..+.+.+.....-+..+..++..+.+..+.....-++|...++ ..||.=||
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~---~ell~~ye 181 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD---PELLSEYE 181 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 345666777777777778888888888888888888888888888888888888887777777776555 23444444
Q ss_pred H
Q 002095 631 A 631 (967)
Q Consensus 631 t 631 (967)
.
T Consensus 182 r 182 (239)
T COG1579 182 R 182 (239)
T ss_pred H
Confidence 3
No 86
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.19 E-value=20 Score=42.19 Aligned_cols=23 Identities=48% Similarity=0.637 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 403 EEYHQRVATLERKVYALTKERDTLR 427 (967)
Q Consensus 403 eEy~qRI~aLErKlq~L~KErD~LK 427 (967)
+||++- .|=+|+|+|-||..+|-
T Consensus 98 eEfisn--tLlkkiqal~keketla 120 (552)
T KOG2129|consen 98 EEFISN--TLLKKIQALFKEKETLA 120 (552)
T ss_pred HHHHHH--HHHHHHHHhhccccccc
Confidence 466642 57788899988888763
No 87
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.94 E-value=29 Score=42.51 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ 617 (967)
Q Consensus 554 Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSss 617 (967)
..+.+.........+..+...|...+.|..+....-+.++ ..+..+..++..++.+.+.+...
T Consensus 304 V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~-~~~~~l~~~l~~l~~~~~~~~~~ 366 (560)
T PF06160_consen 304 VEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNEL-EIVRELEKQLKELEKRYEDLEER 366 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555556666666666555544333222 23344555555555555555543
No 88
>PRK09039 hypothetical protein; Validated
Probab=92.76 E-value=15 Score=42.26 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 567 MLVQALEELRQTLSRTEQ 584 (967)
Q Consensus 567 ~L~qqIedLRe~L~Raeq 584 (967)
.|...|.+|+..+.-++.
T Consensus 78 ~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 78 DLQDSVANLRASLSAAEA 95 (343)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 566677777777764433
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.51 E-value=34 Score=42.34 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIE 387 (967)
Q Consensus 340 ~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e 387 (967)
...||+.|..+|..+...+......+..+...+..+.++..+.+..+.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~ 373 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENE 373 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666665544444444444444444444444433
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.37 E-value=24 Score=40.18 Aligned_cols=101 Identities=25% Similarity=0.315 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHH
Q 002095 641 EAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT----KSLEKERQRAAENRQE 716 (967)
Q Consensus 641 enWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~----~qLE~Er~r~~~~r~e 716 (967)
...+++-..|...+..++...+........+..-+-.+..+...|..++..+++-...+. ..|+.-|+++.....+
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 344778888888888888877777777777777667777777777777777665444321 2233333333333333
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 002095 717 YLAAKEEADTQEGRANQLEEEIKEL 741 (967)
Q Consensus 717 ~~aakee~~~le~r~~~LEeeL~eL 741 (967)
+.+-+.++..++.++..+...++.+
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.04 E-value=3.5 Score=41.94 Aligned_cols=87 Identities=23% Similarity=0.330 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHH
Q 002095 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKE 944 (967)
Q Consensus 865 Ela~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKe 944 (967)
++..|+.+|.-+.+.+..|..||+.++.+.+.+... +...+.++.+|..+...++.++.++ ..+-..+++
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~---lq~~q~kv~eLE~~~~~~~~~l~~~-------E~ek~q~~e 122 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKE---LQKKQEKVSELESLNSSLENLLQEK-------EQEKVQLKE 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHH
Confidence 667777788888888888888888888777777633 5556666777777777666665433 344677777
Q ss_pred HHHHHHHHHHHHHHhcc
Q 002095 945 MYREQVNLLVNKIQVMG 961 (967)
Q Consensus 945 MYR~QIdeLlkQi~~L~ 961 (967)
-++..|.+|..++..|.
T Consensus 123 ~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 123 ESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 78888888877776653
No 92
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.02 E-value=40 Score=41.97 Aligned_cols=59 Identities=24% Similarity=0.331 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 350 EMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (967)
Q Consensus 350 ~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~ 420 (967)
-|+.+...++.-+.++ ..++|.+...+.+|..++..|+.. ++..+.||..||+.|.-|.
T Consensus 5 ~l~qlq~Erd~ya~~l---k~e~a~~qqr~~qmseev~~L~eE---------k~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQL---KEESAQWQQRMQQMSEEVRTLKEE---------KEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 3455555555444443 347888888888888888776652 5566789999999987653
No 93
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.02 E-value=37 Score=41.57 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 466 AQIRKLRAQIRELEEEKK 483 (967)
Q Consensus 466 niIKKLRakikElEee~k 483 (967)
+.|--|.++..++++.+.
T Consensus 235 ~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 94
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.93 E-value=46 Score=42.56 Aligned_cols=50 Identities=28% Similarity=0.313 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 002095 552 AELESRLREAGERETMLVQALEELRQTLS---RTEQQAVFREDMLRRDIEDLQ 601 (967)
Q Consensus 552 ~~Le~~lkEaeere~~L~qqIedLRe~L~---Raeq~a~~rEeeLR~EIs~Le 601 (967)
..+.+...++...+..++.++.+|.-.+. |..+.++...+.||.|...|.
T Consensus 347 ~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~ 399 (980)
T KOG0980|consen 347 AQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLL 399 (980)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666677777777776665 455666666667777666553
No 95
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.85 E-value=16 Score=42.97 Aligned_cols=165 Identities=28% Similarity=0.338 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHH-----HHHHH--HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 002095 343 ELEKLKREMKMMETALQGA-ARQAQAKADEIAK-----MMNEN--EHLKAVIEDLKRKTNDAELETLREEYHQRVATLER 414 (967)
Q Consensus 343 e~~kl~~~~~~~~~~l~~~-~r~~~~k~~~~a~-----L~e~n--~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLEr 414 (967)
.+.+|+.+-=.|++-|+-- +=+.+-+-+.|-+ +.++| .||+.+.-.|-+.. +.+-+.|-.-...||+.||.
T Consensus 137 kl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentl-EQEqEalvN~LwKrmdkLe~ 215 (552)
T KOG2129|consen 137 KLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTL-EQEQEALVNSLWKRMDKLEQ 215 (552)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4566654443444444432 1222333333333 34555 77777766666654 35556777777899999998
Q ss_pred HHHHHHHHHHH------HHHHhhhh----hHHHHHHhhHHHHHHHHHHHhHH----hhHHHHHHHHHHHHHHHHHHHHHH
Q 002095 415 KVYALTKERDT------LRREQNKK----SDAAALLKEKDEIINQVMAEGEE----LSKKQAAQEAQIRKLRAQIRELEE 480 (967)
Q Consensus 415 Klq~L~KErD~------LKke~~k~----s~~~a~LkEKDE~IaqLmEEGEK----LSKkELq~sniIKKLRakikElEe 480 (967)
--.||.+-.|+ +=+.+++. .|.++. + --.|.-|..|=+. |+.-|+.+...+-.+|+.-++..+
T Consensus 216 ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~--~-~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~re 292 (552)
T KOG2129|consen 216 EKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAA--E-KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHRE 292 (552)
T ss_pred HHHHHHHHhcCcccCCCchhhhhcCccccCchHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888887774 12222221 111111 1 1356666667666 566677777777788999999999
Q ss_pred HHHHHHhHHHHHHHhHHHHHHhHHHHHHHHH
Q 002095 481 EKKGLVTKLQVEENKVESIKRDKTATEKLLQ 511 (967)
Q Consensus 481 e~k~Lk~KlE~e~~klesikr~~~a~EK~lq 511 (967)
+..+|+.|+..+..+.++++|...+.++.++
T Consensus 293 en~rlQrkL~~e~erRealcr~lsEsessle 323 (552)
T KOG2129|consen 293 ENERLQRKLINELERREALCRMLSESESSLE 323 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999988888888888877766654
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.83 E-value=35 Score=40.92 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002095 463 AQEAQIRKLRAQIRELEEEKKG 484 (967)
Q Consensus 463 q~sniIKKLRakikElEee~k~ 484 (967)
.....|++|+.++..++.++..
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~ 199 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKT 199 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 97
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.56 E-value=2 Score=52.22 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHH
Q 002095 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKE 944 (967)
Q Consensus 865 Ela~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKe 944 (967)
-+..|+.+++.|...-..+..||-.|-.+++.++..+..-.....++..++.|-..+=-=|-|+...+++|+..+..++.
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555554333455666777777777766778999999999999999999
Q ss_pred HHH
Q 002095 945 MYR 947 (967)
Q Consensus 945 MYR 947 (967)
||+
T Consensus 510 ~~~ 512 (652)
T COG2433 510 MRK 512 (652)
T ss_pred HHh
Confidence 999
No 98
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.55 E-value=29 Score=39.49 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEEL 614 (967)
Q Consensus 571 qIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEEL 614 (967)
.-..|+.+|.-.-++...||..+-.-+....-..+-++++++..
T Consensus 136 eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~ 179 (309)
T PF09728_consen 136 ENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQ 179 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444555554444455555555544444444444444444444
No 99
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.40 E-value=0.057 Score=66.82 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002095 339 DSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLK 383 (967)
Q Consensus 339 ~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~ 383 (967)
+....++.|+.++-.++.++.-..-.+..+.+++.+|...|+.|.
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~ 287 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQ 287 (713)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667666666665555433333344445555555554443
No 100
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.10 E-value=20 Score=36.65 Aligned_cols=71 Identities=25% Similarity=0.387 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 627 RQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKE 706 (967)
Q Consensus 627 RQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~E 706 (967)
..|++|...+.....|-+.++. +++...+ --..+..++..+....+.|+.+|..++.+...|...|+..
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~-------daEn~k~----eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLIL-------DAENSKA----EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777766665544432 2232222 2234566677777777778888888887777777777655
Q ss_pred HH
Q 002095 707 RQ 708 (967)
Q Consensus 707 r~ 708 (967)
+.
T Consensus 93 q~ 94 (140)
T PF10473_consen 93 QE 94 (140)
T ss_pred HH
Confidence 43
No 101
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.80 E-value=53 Score=41.10 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEH-LKAVIEDLKRK-TNDAELETLREEYHQRVATLERKVYA 418 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~-L~~~~e~l~~~-~~~~~~~~L~eEy~qRI~aLErKlq~ 418 (967)
.....|+..++..+..++.++..-+|. ++-+..+.+.+ ++...+.+..+ .+-+++..|+.-|-.+++.++.++..
T Consensus 100 ~dr~~~~~~~l~~~q~a~~~~e~~lq~---q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~ 176 (716)
T KOG4593|consen 100 VDRKHKLLTRLRQLQEALKGQEEKLQE---QLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVML 176 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777666665444433 44444433333 33444444433 23466777888888888888877754
Q ss_pred H
Q 002095 419 L 419 (967)
Q Consensus 419 L 419 (967)
.
T Consensus 177 ~ 177 (716)
T KOG4593|consen 177 Q 177 (716)
T ss_pred H
Confidence 3
No 102
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.76 E-value=7.1 Score=45.27 Aligned_cols=127 Identities=16% Similarity=0.267 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (967)
Q Consensus 571 qIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL 650 (967)
...+|+..++|...+... ..|.+..++...++.|..-...+...++++.. |+..|+..+...-+-=..-|+.|
T Consensus 192 d~~eWklEvERV~PqLKv---~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~----~L~kl~~~i~~~lekI~sREk~i 264 (359)
T PF10498_consen 192 DPAEWKLEVERVLPQLKV---TIRADAKDWRSHLEQMKQHKKSIESALPETKS----QLDKLQQDISKTLEKIESREKYI 264 (359)
T ss_pred CHHHHHHHHHHHhhhhee---eccCCcchHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889888766643 24566688888888877777777666665543 66679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 651 NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 651 ~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE 704 (967)
|.++..+-.+.+.+..+-..++++.......+..+..+|+.+-.++.+.+.+++
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888877777777777777666666666666655555555554444
No 103
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.60 E-value=6.5 Score=38.99 Aligned_cols=90 Identities=24% Similarity=0.375 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 339 DSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYA 418 (967)
Q Consensus 339 ~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~ 418 (967)
-++.-+++|...|+.++..+.... .+++.|..+-+.|..+|-.|-... .+ ......++..|+..+..
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~-------~el~~l~~~r~~l~~Eiv~l~~~~--e~----~~~~~~~~~~L~~el~~ 79 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQ-------EELARLEAERDELREEIVKLMEEN--EE----LRALKKEVEELEQELEE 79 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHH
Confidence 356789999999999999888653 345555555555555555443322 11 12223455555555554
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHH
Q 002095 419 LTKERDTLRREQNKKSDAAALLKEKDEIINQVM 451 (967)
Q Consensus 419 L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLm 451 (967)
|...-+ .+-.+|=||.|.+..|.
T Consensus 80 l~~ry~----------t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 80 LQQRYQ----------TLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHH----------HHHHHhcchHHHHHHHH
Confidence 433332 34467788888888764
No 104
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.53 E-value=29 Score=37.59 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKA 661 (967)
Q Consensus 589 rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl 661 (967)
-|+-|+.-+.+...++...+.|++-|-.-. -+.+..+...|..+.+...+.+..++..+
T Consensus 112 NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA--------------eekL~~ANeei~~v~~~~~~e~~aLqa~l 170 (207)
T PF05010_consen 112 NEETLKKCIEEYEERLKKEEQRYQALKAHA--------------EEKLEKANEEIAQVRSKHQAELLALQASL 170 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 478889999999999998888888885421 24446777777777777766666655554
No 105
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.44 E-value=37 Score=38.76 Aligned_cols=127 Identities=22% Similarity=0.320 Sum_probs=74.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002095 338 ADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (967)
Q Consensus 338 ~~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq 417 (967)
.|-...|-|.-.-|..+..-|+-..|-|.--++=.-.|.+.|..|. +|..+++..|.
T Consensus 51 ~~rv~qmtkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~-----------------------~~~~~le~~L~ 107 (306)
T PF04849_consen 51 SDRVSQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLS-----------------------ERNEALEEQLG 107 (306)
T ss_pred ccchhhhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHH-----------------------HHHHHHHHHHH
Confidence 3445556666667777766666555555443333344455554442 67777888888
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 418 ALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEEL----SKKQAAQEAQIRKLRAQIRELEEEKKGLVT 487 (967)
Q Consensus 418 ~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKL----SKkELq~sniIKKLRakikElEee~k~Lk~ 487 (967)
.......+|+-++..+.++-....-=++...--......| |.-.....-.+.-|+.|++.+|.+-..|..
T Consensus 108 ~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~ 181 (306)
T PF04849_consen 108 AALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRS 181 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766555443333333222111111111 222345556678888899999988888875
No 106
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.40 E-value=45 Score=39.63 Aligned_cols=7 Identities=14% Similarity=0.382 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002095 654 LQEAEAK 660 (967)
Q Consensus 654 L~elE~k 660 (967)
|.+++.+
T Consensus 256 l~~l~~~ 262 (498)
T TIGR03007 256 IEALEKQ 262 (498)
T ss_pred HHHHHHH
Confidence 3333333
No 107
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.24 E-value=11 Score=43.25 Aligned_cols=85 Identities=29% Similarity=0.411 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCcCchHHHHHHHH
Q 002095 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ-VPESTRPLLRQIEAI 632 (967)
Q Consensus 554 Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSss-vseATrPLLRQIEtL 632 (967)
|..-+.+..++...|..+|.+||.+|. +++++|.-|..++...+.....+... .+..-..|++|+|.+
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~-----------E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~ 138 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLN-----------EAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKL 138 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHH
Confidence 444556666677788888999988883 46788888877777655555444333 234456688888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 633 QETTARRAEAWAAVERSLNLRLQE 656 (967)
Q Consensus 633 Q~q~asqsenWe~iE~sL~~RL~e 656 (967)
+.++.. +|+.|.+-+++
T Consensus 139 ~~q~~q-------Le~d~qs~lDE 155 (319)
T PF09789_consen 139 REQIEQ-------LERDLQSLLDE 155 (319)
T ss_pred HHHHHH-------HHHHHHHHHHH
Confidence 777654 55555555544
No 108
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.64 E-value=59 Score=39.87 Aligned_cols=115 Identities=17% Similarity=0.371 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc----cchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--HHHhhhh
Q 002095 369 ADEIAKMMNENEH-----LKAVIEDLKRK----TNDAELETLREEYH----QRVATLERKVYALTKERDTL--RREQNKK 433 (967)
Q Consensus 369 ~~~~a~L~e~n~~-----L~~~~e~l~~~----~~~~~~~~L~eEy~----qRI~aLErKlq~L~KErD~L--Kke~~k~ 433 (967)
.++|.+|...-.. +..++..++.- .+..-++.++..|. ..+..++..+..+-.-.+.. ++.....
T Consensus 24 ~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i 103 (560)
T PF06160_consen 24 YKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAI 103 (560)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3455555555555 33445544442 12333555555553 45566666665554444432 2222233
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 434 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKK 483 (967)
Q Consensus 434 s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k 483 (967)
..+...|..-++.|..+..+=..|=..+-+++..|..|+.+..++.+.+-
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566888888888888888888888888888888887777666655443
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.35 E-value=65 Score=39.98 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 629 IEAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (967)
Q Consensus 629 IEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~ 662 (967)
|++-..-+..=..-|+....-|...+..++....
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKAS 436 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3333333444445577777777666666665433
No 110
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.30 E-value=79 Score=40.87 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002095 401 LREEYHQRVATLERKVYALTK 421 (967)
Q Consensus 401 L~eEy~qRI~aLErKlq~L~K 421 (967)
..+.+.+++..|+.-...+.+
T Consensus 233 e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 233 EIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444
No 111
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.26 E-value=78 Score=40.71 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 586 AVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERS 649 (967)
Q Consensus 586 a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~s 649 (967)
+...-+++.+.+...+.|++.+-..+.++.+ -+.-|||++-..|.|+.++..+-..+++-
T Consensus 408 a~~~~ee~e~~~l~~e~ry~klkek~t~l~~----~h~~lL~K~~di~kQle~~~~s~~~~~~~ 467 (980)
T KOG0980|consen 408 AQVLVEEAENKALAAENRYEKLKEKYTELRQ----EHADLLRKYDDIQKQLESAEQSIDDVEEE 467 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333445555555566666655555555543 46678999999999999888877765553
No 112
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.94 E-value=66 Score=39.49 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=52.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHH
Q 002095 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEI 446 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~ 446 (967)
..+.+++.|...|+.|-..|.+..... .-+++|++.|. +|-.=..|++..-.... .++..+..+|.....-
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~e~ek~~--~~~eslre~~~-~L~~D~nK~~~y~~~~~------~k~~~~~~~l~~l~~E 302 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMINEREKDP--GKEESLREKKA-RLQDDVNKFQAYVSQMK------SKKQHMEKKLEMLKSE 302 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHH-HHHhHHHHHHHHHHHHH------hhhHHHHHHHHHHHHH
Confidence 456789999999999998888555433 33444554332 23332334443222221 1223344555555556
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHH
Q 002095 447 INQVMAEGEELSKKQAAQEAQIRKLR 472 (967)
Q Consensus 447 IaqLmEEGEKLSKkELq~sniIKKLR 472 (967)
|..--+|-|+|.+..-.+.++|.+-+
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~~Ie~Q~ 328 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKKQIELQG 328 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66555565666665555555554443
No 113
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.64 E-value=45 Score=37.18 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSs 616 (967)
+++-....|+.|..-.+-.+.-|.+|..++.+++.|+.++++|++.|..
T Consensus 25 ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~ 73 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTT 73 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666667888888899999999999999988865
No 114
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.04 E-value=45 Score=36.49 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 588 FREDMLRRDIEDLQRRYQASERRCEELVTQ--VPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (967)
Q Consensus 588 ~rEeeLR~EIs~Le~RLEeaEsRaEELSss--vseATrPLLRQIEtLQ~q~asqsenWe~iE 647 (967)
...+.|+..+..|+.|+..++++.+.+... +..++.++-+.|-..-+ .++..+++.+|
T Consensus 113 ~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~--~sa~~~fer~e 172 (225)
T COG1842 113 EQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS--SSAMAAFERME 172 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhHHHHHHHH
Confidence 334446666666666666666655555433 33455555555544433 34444444444
No 115
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.00 E-value=1.1e+02 Score=40.82 Aligned_cols=36 Identities=8% Similarity=-0.061 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 626 LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKA 661 (967)
Q Consensus 626 LRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl 661 (967)
+.|+|..-.+...+-..|+......++|+.++...+
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l 139 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSL 139 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 478888888888888888888888888886655554
No 116
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.48 E-value=1.1e+02 Score=40.25 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=35.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHH
Q 002095 872 RLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVN 951 (967)
Q Consensus 872 ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QId 951 (967)
+++..+..+..|...|.-+..+.+.++ ..++.++.++ ++|+..+.++|.+.= +++.+|.+...-++.+..
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k---~~l~~~~~El----~~~~~~i~~~~p~i~---~i~r~l~~~e~~~~~L~~ 746 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLK---RSLEQNELEL----QRTESEIDEFGPEIS---EIKRKLQNREGEMKELEE 746 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHhhCchHH---HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443 1222222222 456666677776654 555577666665555543
Q ss_pred H
Q 002095 952 L 952 (967)
Q Consensus 952 e 952 (967)
.
T Consensus 747 ~ 747 (1141)
T KOG0018|consen 747 R 747 (1141)
T ss_pred H
Confidence 3
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.31 E-value=59 Score=37.05 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 587 VFREDMLRRDIEDLQRRYQASERRCEELVT 616 (967)
Q Consensus 587 ~~rEeeLR~EIs~Le~RLEeaEsRaEELSs 616 (967)
.||-.-+.+=+..|...+..+.....-|..
T Consensus 141 eWR~~ll~gl~~~L~~~~~~L~~D~~~L~~ 170 (325)
T PF08317_consen 141 EWRMQLLEGLKEGLEENLELLQEDYAKLDK 170 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777777777766666644
No 118
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.16 E-value=56 Score=36.59 Aligned_cols=41 Identities=29% Similarity=0.315 Sum_probs=32.3
Q ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 620 ESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEER 667 (967)
Q Consensus 620 eATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~er 667 (967)
...|.||.|++.+.+..+ .+|++-..++..++..+.+..++
T Consensus 38 ~~Vr~lLqqy~~~~~~i~-------~le~~~~~~l~~ak~eLqe~eek 78 (258)
T PF15397_consen 38 LKVRKLLQQYDIYRTAID-------ILEYSNHKQLQQAKAELQEWEEK 78 (258)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHccChHHHHHHHHHHHHHHHH
Confidence 446889999987766554 48888899999999888776665
No 119
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=87.03 E-value=95 Score=39.10 Aligned_cols=93 Identities=23% Similarity=0.308 Sum_probs=62.2
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHhhHHHHHHHHHHHhHHhhHH
Q 002095 382 LKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQ-NKKSDAAALLKEKDEIINQVMAEGEELSKK 460 (967)
Q Consensus 382 L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~-~k~s~~~a~LkEKDE~IaqLmEEGEKLSKk 460 (967)
.+.+++.+.+.. ...+..|+..|-.-++.|-+|..-|.+....+-... .-.+.++..-+|.|..-.+|-.-|+.|..
T Consensus 138 ~q~ELee~q~~H-qeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~- 215 (739)
T PF07111_consen 138 SQRELEEAQRLH-QEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA- 215 (739)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 455666666655 588999999999999999999998888765542211 11245566667777766665555554443
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 461 QAAQEAQIRKLRAQIRELE 479 (967)
Q Consensus 461 ELq~sniIKKLRakikElE 479 (967)
+.+.+-.||..|.+.-
T Consensus 216 ---q~tlv~~LR~YvGeq~ 231 (739)
T PF07111_consen 216 ---QVTLVEQLRKYVGEQV 231 (739)
T ss_pred ---HHHHHHHHHHHHhhhC
Confidence 2344788998887643
No 120
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.84 E-value=85 Score=38.38 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHH
Q 002095 339 DSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKT-NDAELETLREEYHQRVATLERKVY 417 (967)
Q Consensus 339 ~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~-~~~~~~~L~eEy~qRI~aLErKlq 417 (967)
|...-+..++.+++..-..+....++++.+..+...+..+.+-|+.+++++..-. ...+.+.|..+| .||...++-..
T Consensus 151 D~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~-~~L~n~e~i~~ 229 (563)
T TIGR00634 151 DTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQ-QRLSNLEKLRE 229 (563)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHH-HHHhCHHHHHH
Confidence 3444455677888888888888888888888888999999999999999988842 345556666665 45655554444
Q ss_pred HH
Q 002095 418 AL 419 (967)
Q Consensus 418 ~L 419 (967)
.+
T Consensus 230 ~~ 231 (563)
T TIGR00634 230 LS 231 (563)
T ss_pred HH
Confidence 33
No 121
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.59 E-value=55 Score=35.02 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 590 EDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERER 669 (967)
Q Consensus 590 EeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr 669 (967)
.-+|++++.+|+.+++++..-+.= |+++ |.-...+-.-+++-+..|-.-|..-....+....+-|
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~------------Lk~l---q~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKT------------LKQL---QKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLR 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655554443322 2222 2222233344445555555555554444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLTK 701 (967)
Q Consensus 670 ~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~ 701 (967)
...++...+..+++..+.++..++..+..|..
T Consensus 79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 79 KSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555444443
No 122
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.53 E-value=72 Score=36.34 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 646 VERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAEN 713 (967)
Q Consensus 646 iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~ 713 (967)
.|..|..+|..+++.+..+..- -..+.++..+..++..+-.+...+..++..|..+.+.+.+.+.++
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~-~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~ 198 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKA-LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKL 198 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776654332 224445555555555566666666666666655555554444433
No 123
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.08 E-value=76 Score=40.28 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 667 RERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (967)
Q Consensus 667 rEr~~~ekl~~~~~ri~~LE~els~lr~E~~~ 698 (967)
.||.|.+.+..+..++..+...++.++.....
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666655555555555555444443
No 124
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.82 E-value=85 Score=39.85 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHhhHHHHHHHHHHHhHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002095 437 AALLKEKDEIINQVMAEGEE-LSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVE 492 (967)
Q Consensus 437 ~a~LkEKDE~IaqLmEEGEK-LSKkELq~sniIKKLRakikElEee~k~Lk~KlE~e 492 (967)
.+.|..+=+.+-+++..... ||.-|.+...-++.++.+++.+...++.++.|++..
T Consensus 609 Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 609 QEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333334444 888887777777777777777776666666665543
No 125
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.68 E-value=86 Score=36.45 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h----ccCCcCchHH
Q 002095 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV------T----QVPESTRPLL 626 (967)
Q Consensus 567 ~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELS------s----svseATrPLL 626 (967)
.+..+.+.||.+++|.+.+. ..|+.|...|..-..++|+.++-++ - +-+.+|-|||
T Consensus 249 EfdiEre~LRAel~ree~r~----K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk~pvtvskgtateplm 314 (561)
T KOG1103|consen 249 EFDIEREFLRAELEREEKRQ----KMLKEEMESLKEIVKDLEADHQHLRPNEQLKGPVTVSKGTATEPLM 314 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhhcCccccccCceeeccccccchhH
Confidence 34456777888887765443 4566677777666666666544443 2 2247799996
No 126
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.66 E-value=1.1e+02 Score=38.60 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 630 EAIQETTARRAEAWAAVERSLNLRLQEAEAKAAA 663 (967)
Q Consensus 630 EtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~ 663 (967)
|-||-.+.....+-+.+|+ |.+-+..+.+++++
T Consensus 202 ErlqlhlkermaAle~kn~-L~~e~~s~kk~l~~ 234 (916)
T KOG0249|consen 202 ERLQLHLKERMAALEDKNR-LEQELESVKKQLEE 234 (916)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7777766666666666654 33344444444443
No 127
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.33 E-value=21 Score=38.55 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 622 TRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAK 660 (967)
Q Consensus 622 TrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~k 660 (967)
+.++--++..||.++......-..+...+.++.++++.+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~ 126 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK 126 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455555666666666554443333444443444444333
No 128
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.17 E-value=99 Score=36.78 Aligned_cols=62 Identities=23% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 002095 876 MESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRA 937 (967)
Q Consensus 876 Les~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELra 937 (967)
++.+...+...+..|..+.+.++.....++..+.++..|+..|+..=.+|-.=....++.+.
T Consensus 322 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 322 AEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444445555555556666666666666665555555444445555443
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.82 E-value=11 Score=39.57 Aligned_cols=72 Identities=25% Similarity=0.327 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002095 674 RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (967)
Q Consensus 674 kl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~ 745 (967)
++.....++..++.++..++.++.++...|..-..-.....+++.+..-++..++.++..|+.+-.+|=.+|
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666666666666666543333444555666666666666666666665555553333
No 130
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.69 E-value=1.7e+02 Score=39.10 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=23.7
Q ss_pred HHHHhhHHHHHHHHHHHhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002095 437 AALLKEKDEIINQVMAEGEELSKKQAA-QEAQIRKLRAQIRELEEEKKGL 485 (967)
Q Consensus 437 ~a~LkEKDE~IaqLmEEGEKLSKkELq-~sniIKKLRakikElEee~k~L 485 (967)
...+.+-+.++...-.+|+.|+.-+.. +.+...-|.+++..++.++...
T Consensus 150 ~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~ 199 (1109)
T PRK10929 150 RRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSA 199 (1109)
T ss_pred HHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555554554545566777765432 2222333444555555544433
No 131
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.95 E-value=3.4 Score=43.49 Aligned_cols=84 Identities=25% Similarity=0.277 Sum_probs=34.3
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 002095 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELR 936 (967)
Q Consensus 857 A~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELr 936 (967)
..|..++.++......|+.|+..+..|..+|..|..++.+.. +-+..|..++..|+-.| .-|.
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~---k~~e~l~DE~~~L~l~~--------------~~~e 164 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN---KANEILQDELQALQLQL--------------NMLE 164 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------HHHH
Confidence 334444444444444444444444444444444443332222 22333444444444333 2334
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 002095 937 ADIMDLKEMYREQVNLLVNKI 957 (967)
Q Consensus 937 aDV~DVKeMYR~QIdeLlkQi 957 (967)
.-+..|+.=++.+|+++|...
T Consensus 165 ~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 165 EKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777776654
No 132
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.79 E-value=98 Score=39.32 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 002095 398 LETLREEYHQRVAT------LERKVYALTKER 423 (967)
Q Consensus 398 ~~~L~eEy~qRI~a------LErKlq~L~KEr 423 (967)
++.|++||-+||++ |..|+..|..+-
T Consensus 513 ~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 513 IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 88899999999997 888888775554
No 133
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.55 E-value=96 Score=35.42 Aligned_cols=75 Identities=20% Similarity=0.381 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHH-HHHHHHHHHHHHH
Q 002095 407 QRVATLERKVYALTKERDTLRREQNKKSDA----AALLKEKDEIINQVMAEGEELSKKQAAQEAQI-RKLRAQIRELEEE 481 (967)
Q Consensus 407 qRI~aLErKlq~L~KErD~LKke~~k~s~~----~a~LkEKDE~IaqLmEEGEKLSKkELq~sniI-KKLRakikElEee 481 (967)
.++..+++++..+.+++|.++.+..+...+ ..+=+|=.-....|++|...++..+-..+..+ -|+...|.+....
T Consensus 43 k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~ 122 (309)
T PF09728_consen 43 KQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQ 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888999888887754433 33446666667777777777777765555444 4555555554443
No 134
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.54 E-value=85 Score=34.81 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 590 EDMLRRDIEDLQRRYQASERRCEEL 614 (967)
Q Consensus 590 EeeLR~EIs~Le~RLEeaEsRaEEL 614 (967)
-+.|+++++.++..+++++.|..-+
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666544433
No 135
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=82.51 E-value=96 Score=35.39 Aligned_cols=153 Identities=20% Similarity=0.303 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE 647 (967)
|...+.+++.+..-.. -..+--..++.+|..|+-..+ .+.-.|.--+.|+..|.-|...|..+. .+.
T Consensus 88 L~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~--------T~~L~~e~E~~lvq~I~~L~k~le~~~----k~~ 154 (294)
T COG1340 88 LRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQ--------TSVLTPEEERELVQKIKELRKELEDAK----KAL 154 (294)
T ss_pred HHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHH--------hcCCChHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4444555555544222 112223334455555444433 122244556778888877777665533 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002095 648 RSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQ 727 (967)
Q Consensus 648 ~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~l 727 (967)
. .+..+.++..+++. ++.++.+...++..|-.+.+..-.++..+-...+..|.++-..+.++......++.+
T Consensus 155 e-~~~~~~el~aei~~-------lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 155 E-ENEKLKELKAEIDE-------LKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred H-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1 23344555555444 333334444444444445444444445555555555555555555544444443333
Q ss_pred HhHHHHHHHHHHHH
Q 002095 728 EGRANQLEEEIKEL 741 (967)
Q Consensus 728 e~r~~~LEeeL~eL 741 (967)
...+..+..+|..+
T Consensus 227 ~ee~~~~~~elre~ 240 (294)
T COG1340 227 HEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 136
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.52 E-value=1e+02 Score=35.16 Aligned_cols=105 Identities=19% Similarity=0.321 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE 647 (967)
|...-.-|..+|....+. .++|..||.....||-+|-..+++--.+- -.|.-+|-....-|-.+=
T Consensus 68 L~aENt~L~SkLe~EKq~----kerLEtEiES~rsRLaaAi~d~dqsq~sk-----------rdlelafqr~rdEw~~lq 132 (305)
T PF14915_consen 68 LKAENTMLNSKLEKEKQN----KERLETEIESYRSRLAAAIQDHDQSQTSK-----------RDLELAFQRARDEWVRLQ 132 (305)
T ss_pred HHHHHHHHhHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHhhH-----------HHHHHHHHHHhhHHHHHH
Confidence 334444455555444333 45677888888888888877777643321 234455666777888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 648 RSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRA 694 (967)
Q Consensus 648 ~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~ 694 (967)
-.++.-+.++.-.- -.+..+|..+..+++.|+.++..++-
T Consensus 133 dkmn~d~S~lkd~n-------e~LsQqLskaesK~nsLe~elh~trd 172 (305)
T PF14915_consen 133 DKMNSDVSNLKDNN-------EILSQQLSKAESKFNSLEIELHHTRD 172 (305)
T ss_pred HHhcchHHhHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666554332 23555677777777778877766553
No 137
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.21 E-value=27 Score=31.90 Aligned_cols=72 Identities=26% Similarity=0.440 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHH
Q 002095 552 AELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEA 631 (967)
Q Consensus 552 ~~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEt 631 (967)
..|+.+++.+-+-+..|+..|++|+++-. .|-.|.++++...++++.+++.+.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn-----------~l~~e~q~~q~~reaL~~eneqlk---------------- 59 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNN-----------SLSQEVQNAQHQREALERENEQLK---------------- 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HhHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 34555566666666667777777776643 355566666666666666666552
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 632 IQETTARRAEAWAAVERSLNLRLQE 656 (967)
Q Consensus 632 LQ~q~asqsenWe~iE~sL~~RL~e 656 (967)
....+|+.-=++|..|+.+
T Consensus 60 ------~e~~~WQerlrsLLGkme~ 78 (79)
T COG3074 60 ------EEQNGWQERLRALLGKMEE 78 (79)
T ss_pred ------HHHHHHHHHHHHHHhhhcc
Confidence 3345777777777666543
No 138
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=80.70 E-value=1.3e+02 Score=35.63 Aligned_cols=258 Identities=19% Similarity=0.235 Sum_probs=122.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 339 DSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYA 418 (967)
Q Consensus 339 ~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~ 418 (967)
|++ +-|+++|..|.+.+++- -.+-..+...+..+..+. -.+...++..|-+-++++|.--|.
T Consensus 291 D~~---~~L~k~vQ~L~AQle~~--------------R~q~e~~q~~~~s~~d~~-~~~~~~~qatCERgfAaMEetHQk 352 (593)
T KOG4807|consen 291 DGH---EALEKEVQALRAQLEAW--------------RLQGEAPQSALRSQEDGH-IPPGYISQATCERGFAAMEETHQK 352 (593)
T ss_pred cch---HHHHHHHHHHHHHHHHH--------------HHhccCchhhHhhhhhcc-CCccHHHHHHHHhhHHHHHHHHHH
Confidence 555 45677899999888853 112233444444444433 244556667777777777765554
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Q 002095 419 LTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVES 498 (967)
Q Consensus 419 L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~KlE~e~~kles 498 (967)
.+.+. .++..+ .+.++-.|||-.++. |.- .+|-.+-+ -.+.....++.+..+..+
T Consensus 353 kiEdL---QRqHqR--ELekLreEKdrLLAE---ETA----------ATiSAIEA-------MKnAhrEEmeRELeKsqS 407 (593)
T KOG4807|consen 353 KIEDL---QRQHQR--ELEKLREEKDRLLAE---ETA----------ATISAIEA-------MKNAHREEMERELEKSQS 407 (593)
T ss_pred HHHHH---HHHHHH--HHHHHHHHHHhhhhh---hhh----------hhhHHHHH-------HHHHHHHHHHHHHHhhhc
Confidence 43322 222211 334444455543332 211 11111111 111112233344444445
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 002095 499 IKRDKTATEKLLQETIEKHQVELGEQKDYYT-NALAAAKEAEELAEARANNEARAELESRLREA-GERETMLVQALEELR 576 (967)
Q Consensus 499 ikr~~~a~EK~lqe~iek~q~eL~a~k~~~~-~~L~~AKe~e~lAE~ra~~Ea~~~Le~~lkEa-eere~~L~qqIedLR 576 (967)
+....+++.+...+.+...+.+|..+.+.|. ..|.-+--..++.+.+.....+....+.+..- .+-..+|..+|..||
T Consensus 408 vnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLR 487 (593)
T KOG4807|consen 408 VNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLR 487 (593)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555666667777777788888888777775 33322111111101111111111111111100 011126667777777
Q ss_pred HHHHH---------HH--------HHHHHH---HHHHHHHHHHHHHHHHHHHHH-----------HHHHHhccCCcCchH
Q 002095 577 QTLSR---------TE--------QQAVFR---EDMLRRDIEDLQRRYQASERR-----------CEELVTQVPESTRPL 625 (967)
Q Consensus 577 e~L~R---------ae--------q~a~~r---EeeLR~EIs~Le~RLEeaEsR-----------aEELSssvseATrPL 625 (967)
.-|.. +. ==.+.+ ..+|+.||+-|...|+.|-.. +-|||- +-.+-
T Consensus 488 tlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSi----aKaka 563 (593)
T KOG4807|consen 488 TLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSI----AKAKA 563 (593)
T ss_pred HHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH----HHHhh
Confidence 66541 11 111122 457888999988888864431 233332 22222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 626 LRQIEAIQETTARRAEAW 643 (967)
Q Consensus 626 LRQIEtLQ~q~asqsenW 643 (967)
=+-|+.|..++..+.++.
T Consensus 564 dcdIsrLKEqLkaAteAL 581 (593)
T KOG4807|consen 564 DCDISRLKEQLKAATEAL 581 (593)
T ss_pred hccHHHHHHHHHHHHHHh
Confidence 345777777777666543
No 139
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.26 E-value=1.1e+02 Score=34.52 Aligned_cols=145 Identities=17% Similarity=0.303 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKT--NDAELETLREEYHQRVATLERKVYALTK 421 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~--~~~~~~~L~eEy~qRI~aLErKlq~L~K 421 (967)
+.+--..++.++....+++-+++++-.+|-.++...+.++.+|..++..- -..+|..+++--.+|=.-|.+++..+-.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778888888888888888888888888777777777777666532 2234444444333333333322221100
Q ss_pred HH------HHHHH-H-----hhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002095 422 ER------DTLRR-E-----QNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTK 488 (967)
Q Consensus 422 Er------D~LKk-e-----~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~K 488 (967)
-- |.+=. . +.+.+.+..++.==-.+|.++.+.-..|+.++-.....+.+|-+-..+++..+..|..+
T Consensus 113 nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~q 191 (265)
T COG3883 113 NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQ 191 (265)
T ss_pred cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 0 00111122233333357788888888899999999999999999999998888888753
No 140
>PRK11281 hypothetical protein; Provisional
Probab=79.81 E-value=2.3e+02 Score=37.99 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=18.4
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002095 453 EGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQ 490 (967)
Q Consensus 453 EGEKLSKkELq~sniIKKLRakikElEee~k~Lk~KlE 490 (967)
...++|..+ ++..+-.+...+.+.+..+..++..+-
T Consensus 117 ~~~~~Sl~q--LEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 117 TLSTLSLRQ--LESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred cccccCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655 344455555555555555555554433
No 141
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.54 E-value=93 Score=33.34 Aligned_cols=76 Identities=29% Similarity=0.458 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 404 EYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKK 483 (967)
Q Consensus 404 Ey~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k 483 (967)
+..-.|..++.+++.+..|...||.-..+...+-...-. -...|+.--..|++-|+-||.+++.......
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~----------~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r 85 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYED----------TEAELPQLLQRHNEEVRVLRERLRKSQEQER 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888888888888887755442221111111 1123555556778888888887777666665
Q ss_pred HHHhHH
Q 002095 484 GLVTKL 489 (967)
Q Consensus 484 ~Lk~Kl 489 (967)
.+..++
T Consensus 86 ~~~~kl 91 (194)
T PF15619_consen 86 ELERKL 91 (194)
T ss_pred HHHHHH
Confidence 555443
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.52 E-value=1.8e+02 Score=36.68 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcCch---HHHHHHHHHHHH
Q 002095 596 DIEDLQRRYQASERRCEELVTQVPESTRP---LLRQIEAIQETT 636 (967)
Q Consensus 596 EIs~Le~RLEeaEsRaEELSssvseATrP---LLRQIEtLQ~q~ 636 (967)
-|.+|..++..++.+..+++...++.+-. |-+||+.|+.++
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666554433222 234565555554
No 143
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=79.47 E-value=1.9e+02 Score=36.78 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 002095 408 RVATLERKVYALTKERDTLRREQN 431 (967)
Q Consensus 408 RI~aLErKlq~L~KErD~LKke~~ 431 (967)
.+.+++.++....++.+.++....
T Consensus 228 ~~~~lee~~~~~~~e~~~l~~~~e 251 (698)
T KOG0978|consen 228 KVIKLEEKLAQCVKEYEMLRKEFE 251 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHH
Confidence 378899999999999998877543
No 144
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.90 E-value=2.3e+02 Score=37.48 Aligned_cols=140 Identities=28% Similarity=0.384 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHHHH---HHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 002095 339 DSVCELEKLKREMKM---METALQGAARQ------AQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRV 409 (967)
Q Consensus 339 ~~~~e~~kl~~~~~~---~~~~l~~~~r~------~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI 409 (967)
|-..|++||++++.- .+.+|..-.|. .+.++.+|-+|..+.+++..++..+...- .-...++.....+.
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~--~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY--MNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence 456789999988753 34444432232 55667777777778888887777777654 22334567778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002095 410 ATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKL 489 (967)
Q Consensus 410 ~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~Kl 489 (967)
..++++|+.-+++...++.+... +.+.|++++++|.++-.=-.+|... -.+||..+.+....+..|-.|+
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~---~~~~l~~~e~ii~~~~~se~~l~~~-------a~~l~~~~~~s~~d~s~l~~kl 555 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQ---AKATLKEEEEIISQQEKSEEKLVDR-------ATKLRRSLEESQDDLSSLFEKL 555 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877776543 5567999999999866544444433 5678888888777777776655
Q ss_pred H
Q 002095 490 Q 490 (967)
Q Consensus 490 E 490 (967)
.
T Consensus 556 d 556 (1041)
T KOG0243|consen 556 D 556 (1041)
T ss_pred h
Confidence 5
No 145
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.34 E-value=1.7e+02 Score=35.74 Aligned_cols=136 Identities=20% Similarity=0.244 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------------------Hhcccc---h---HHHHHH----H
Q 002095 351 MKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIED------------------LKRKTN---D---AELETL----R 402 (967)
Q Consensus 351 ~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~------------------l~~~~~---~---~~~~~L----~ 402 (967)
+-..+-.|+.|||-=|++-+.+..|++.|.-|-.+++. |+-.+. + +.+.+. -
T Consensus 71 le~k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~ 150 (596)
T KOG4360|consen 71 LEEKRRDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSN 150 (596)
T ss_pred HhcccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccC
Confidence 33444566667776677777777777777766554421 111110 0 000000 0
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHhhh-----------h----hHHHHHHhhHHHHHHHHHHHhHHhhHHHHH
Q 002095 403 EEYH----QRVATLERKVYALTKERDTLRREQNK-----------K----SDAAALLKEKDEIINQVMAEGEELSKKQAA 463 (967)
Q Consensus 403 eEy~----qRI~aLErKlq~L~KErD~LKke~~k-----------~----s~~~a~LkEKDE~IaqLmEEGEKLSKkELq 463 (967)
++|+ .-+.+|..||.-+.+|+.+||.+..- . ++.-+.|++-+.+|.-+.+|=+.+++.--+
T Consensus 151 ~s~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~ 230 (596)
T KOG4360|consen 151 ESRSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSR 230 (596)
T ss_pred cchhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 23678888888888888888775431 1 233457777777888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002095 464 QEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 464 ~sniIKKLRakikElEee~k~Lk 486 (967)
+-.-+-||=.+|.++.+.++.+.
T Consensus 231 q~Ee~skLlsql~d~qkk~k~~~ 253 (596)
T KOG4360|consen 231 QQEENSKLLSQLVDLQKKIKYLR 253 (596)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777888888887777666654
No 146
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=78.08 E-value=1.5e+02 Score=34.76 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 002095 650 LNLRLQEAEAKAAA 663 (967)
Q Consensus 650 L~~RL~elE~kl~~ 663 (967)
|..+|.+++.++..
T Consensus 259 l~~~l~~le~~l~~ 272 (444)
T TIGR03017 259 LKTDIARAESKLAE 272 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555554444
No 147
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=77.96 E-value=34 Score=36.62 Aligned_cols=84 Identities=23% Similarity=0.316 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccc--------------------
Q 002095 345 EKLKREMKMMETALQGA-----------ARQAQAKADEIAKMMNENEHLKAVIEDLKRKT-------------------- 393 (967)
Q Consensus 345 ~kl~~~~~~~~~~l~~~-----------~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~-------------------- 393 (967)
+-|+++++..+..--++ -|++|-..-+|-.|.+.|.-|+.++.+|+.-.
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrF 98 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRF 98 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHh
Confidence 44556666555542221 27788888888888888888888887776531
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 394 ---NDAELETLREEYHQRVATLERKVYALTKERDTLRR 428 (967)
Q Consensus 394 ---~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKk 428 (967)
+..-+..--..|.++|..||.|.+.|++|...||-
T Consensus 99 Gryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 99 GRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 01112222346889999999999999999987764
No 148
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.74 E-value=35 Score=38.92 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHH
Q 002095 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKE 944 (967)
Q Consensus 865 Ela~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKe 944 (967)
++..+..++..++.+...+..||-.|..+.+++..+ +..|+.+..+|+..-......+-...=+.-++..+...|+.
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~e---l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQE---LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555543 33344444444444443333333333334444555555544
Q ss_pred HHHH
Q 002095 945 MYRE 948 (967)
Q Consensus 945 MYR~ 948 (967)
.|.-
T Consensus 121 q~~~ 124 (314)
T PF04111_consen 121 QYEY 124 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 149
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.54 E-value=2.1e+02 Score=35.73 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHH
Q 002095 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRK--TNDAELETLREEYHQRVATLERKVY 417 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~--~~~~~~~~L~eEy~qRI~aLErKlq 417 (967)
..+++.|.+++..+...++ .+..+++.+..+.+.+...+..+... ....++...++..-.++..++..+.
T Consensus 208 ~~~~~~le~el~~l~~~~e-------~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYE-------DLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444 44555666666666666666655552 2223333333344444444444443
No 150
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.28 E-value=53 Score=30.01 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002095 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq 417 (967)
+..+++|-..|..+-..+.. +..++.+|.+.|..|..++..|+... .-+..-+..+..||.+|=.|+.
T Consensus 3 ~E~l~~LE~ki~~aveti~~-------Lq~e~eeLke~n~~L~~e~~~L~~en--~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIAL-------LQMENEELKEKNNELKEENEELKEEN--EQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 34566666666655555553 33355555555444444444444332 2222335666788887766654
No 151
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=76.02 E-value=17 Score=43.73 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 002095 861 QKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA----AILPGIQAELDALRRRHSAALELMGERDEELEELR 936 (967)
Q Consensus 861 rrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~----~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELr 936 (967)
.+--|+..++.++..|.++--.+..++--+.-+++++.+-. +.-..|..++.+|+.||--.++|+-|-.|++..||
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444444444444444444444444443332 22345888999999999999999999999999887
Q ss_pred H
Q 002095 937 A 937 (967)
Q Consensus 937 a 937 (967)
.
T Consensus 303 s 303 (596)
T KOG4360|consen 303 S 303 (596)
T ss_pred c
Confidence 5
No 152
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.96 E-value=77 Score=32.88 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHH
Q 002095 902 AILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLL 953 (967)
Q Consensus 902 ~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeL 953 (967)
.++..+...+.++...+.-+...+.+--+.+++++-.+.++..-|..+.+.+
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666665555556666777777777777766666665443
No 153
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.61 E-value=38 Score=36.59 Aligned_cols=37 Identities=5% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 626 LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (967)
Q Consensus 626 LRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~ 662 (967)
-+|+..|++.++.....|...-..|..+++.+.....
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVIN 135 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777778888888888888887555533
No 154
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.46 E-value=58 Score=37.21 Aligned_cols=94 Identities=29% Similarity=0.481 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (967)
Q Consensus 343 e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KE 422 (967)
-+..|+-.+.+++.-+..|-..-.-+--+++.|+=+.|-|++.++++.. .+..+.-+|-+.+.++|+- .+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE-----~~~~~~re~~eK~~elEr~----K~~ 148 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEE-----TLAQLQREYREKIRELERQ----KRA 148 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH----HHH
Confidence 4556688888888888877322222334888888888888888887543 4556677776666665432 222
Q ss_pred HHHHHHHhhhhhHHHHHHhhHHHHHH
Q 002095 423 RDTLRREQNKKSDAAALLKEKDEIIN 448 (967)
Q Consensus 423 rD~LKke~~k~s~~~a~LkEKDE~Ia 448 (967)
.|.|+.+. ..+...|+++|+.|+
T Consensus 149 ~d~L~~e~---~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 149 HDSLREEL---DELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 23333322 345667788888884
No 155
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.08 E-value=40 Score=34.67 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=56.5
Q ss_pred HHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc---hhHH
Q 002095 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQ--CEKLRAEAAILPGIQAELDALRRRHSAALELMGER---DEEL 932 (967)
Q Consensus 858 ~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~E--nEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEK---sEeV 932 (967)
.+..++.++..|+.++..+......|..||-.|... ++++.. .+..|+.++..|..|...+=. |-+ .+++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~---~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~ 147 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELRE---EIEELEEEIEELEEKLEKLRS--GSKPVSPEEK 147 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHH
Confidence 356677778888888888888888888888888663 355553 467778888888888777665 322 3444
Q ss_pred HHHHHhHHHHHHHHH
Q 002095 933 EELRADIMDLKEMYR 947 (967)
Q Consensus 933 EELraDV~DVKeMYR 947 (967)
+.+......+..+|+
T Consensus 148 ~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 148 EKLEKEYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 156
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.99 E-value=1.2e+02 Score=31.56 Aligned_cols=123 Identities=23% Similarity=0.273 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHhcc--cchHHHHHHHHHHH---HHHHHHHHH
Q 002095 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKM-MNENEHLKAVIEDLKRK--TNDAELETLREEYH---QRVATLERK 415 (967)
Q Consensus 342 ~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L-~e~n~~L~~~~e~l~~~--~~~~~~~~L~eEy~---qRI~aLErK 415 (967)
.++++++-...-+...+.-...++..+..=.--| ....++|+.++..+..+ ....++..|+.-|. +-|.-.-.|
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667776666666666655444444432211112 23444455444444443 12355555555443 555555666
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 002095 416 VYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (967)
Q Consensus 416 lq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRak 474 (967)
+..+..+.. .+...|..+++.+..+.++-..+-..--+....+++||.+
T Consensus 86 l~~~~~~~~----------~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 86 LHFLSEELE----------RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666655555 3344566777777777777666666666666666667665
No 157
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.50 E-value=1.9e+02 Score=33.30 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 644 AAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQL 699 (967)
Q Consensus 644 e~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L 699 (967)
+|+...|..-+..++.........+..+..-+-.+..+...|..++..+++-...+
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56777777777777766666666666666655666666666776666665544443
No 158
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=71.43 E-value=1.7e+02 Score=32.30 Aligned_cols=71 Identities=24% Similarity=0.330 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 407 QRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 407 qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk 486 (967)
.+|..++..+..|..+.+.|..+...... .+..|-...+..-..=..+...|+.++..|.++-..+..|.
T Consensus 45 ~~~~~~e~~l~~L~~d~~~L~~k~~~~~~----------~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~ 114 (264)
T PF06008_consen 45 QQLDPLEKELESLEQDVENLQEKATKVSR----------KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLN 114 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56777777777777777766665543322 22333445555555556666778888888888877777776
Q ss_pred h
Q 002095 487 T 487 (967)
Q Consensus 487 ~ 487 (967)
.
T Consensus 115 ~ 115 (264)
T PF06008_consen 115 E 115 (264)
T ss_pred c
Confidence 4
No 159
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.94 E-value=3.2e+02 Score=35.31 Aligned_cols=114 Identities=24% Similarity=0.378 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Q 002095 632 IQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE---------------------RSVNERLSQTLSRINVLEAQIS 690 (967)
Q Consensus 632 LQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erE---------------------r~~~ekl~~~~~ri~~LE~els 690 (967)
++......+.-|+.+=.-|-.+|.++.+++..+.-.- ..+...+..+..|+..+|-++.
T Consensus 72 i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~ 151 (769)
T PF05911_consen 72 IHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENS 151 (769)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666655543322211 1122244566778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHH
Q 002095 691 CLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEG--RANQLEEEIKELRRKHKQ 747 (967)
Q Consensus 691 ~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~--r~~~LEeeL~eLr~k~~~ 747 (967)
.|+.++.-+...|+-.-....-++....++-. .+++. ++..||.++.-||.=.++
T Consensus 152 ~Lkye~~~~~keleir~~E~~~~~~~ae~a~k--qhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 152 SLKYELHVLSKELEIRNEEREYSRRAAEAASK--QHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988888888887432222212222222211 12222 467788888777665543
No 160
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.89 E-value=43 Score=31.21 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 549 EARAELESRLREAGERETMLVQALEELRQTLSRTEQQ----------AVFREDMLRRDIEDLQRRYQASERRCE 612 (967)
Q Consensus 549 Ea~~~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~----------a~~rEeeLR~EIs~Le~RLEeaEsRaE 612 (967)
+....|+.++..+-+.+..|+..|++|+++=....+. ....-..|+.|...++.|+..+-.+.+
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445667777777777777777888887764433332 222445677777777777776655443
No 161
>PRK11519 tyrosine kinase; Provisional
Probab=70.36 E-value=1.8e+02 Score=36.75 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=5.5
Q ss_pred ccCCCCccccccc
Q 002095 283 SSASSPKAVSETV 295 (967)
Q Consensus 283 ~~~~~~~~~~~~~ 295 (967)
-...|-+.++-+|
T Consensus 50 ~~~~PvY~a~a~l 62 (719)
T PRK11519 50 FFATPIYSADALV 62 (719)
T ss_pred HhCCceeeeeEEE
Confidence 3334444444443
No 162
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.20 E-value=2.9e+02 Score=35.04 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 002095 625 LLRQIEAIQETTA 637 (967)
Q Consensus 625 LLRQIEtLQ~q~a 637 (967)
++.||..|++|+.
T Consensus 309 ~l~~~~~l~~ql~ 321 (726)
T PRK09841 309 VLEQIVNVDNQLN 321 (726)
T ss_pred HHHHHHHHHHHHH
Confidence 4455554444433
No 163
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.92 E-value=45 Score=37.14 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=53.7
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 002095 335 SVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMN--ENEHLKAVIEDLKRKTNDAELETLREEYHQRVATL 412 (967)
Q Consensus 335 ~~s~~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e--~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aL 412 (967)
.++-|.|+-+.+|+.||..|..-|----..+..|-++|..|-- +|+ ..+..-.-+|++.|
T Consensus 218 ~~~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~------------------~~~ek~Hke~v~qL 279 (305)
T KOG3990|consen 218 RDPGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQ------------------KELEKKHKERVQQL 279 (305)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHH------------------HHHHHHHHHHHHHH
Confidence 3455899999999999999998876544445555555555522 222 11233345789999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002095 413 ERKVYALTKERDTLRR 428 (967)
Q Consensus 413 ErKlq~L~KErD~LKk 428 (967)
.+|...+.|+.++|++
T Consensus 280 ~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 280 QKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999984
No 164
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=69.35 E-value=2.8e+02 Score=34.00 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 395 DAELETLREEYHQRVATLERKVYALTKERD 424 (967)
Q Consensus 395 ~~~~~~L~eEy~qRI~aLErKlq~L~KErD 424 (967)
..+...+-..+..+|.+|.+++..+....+
T Consensus 246 ~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~ 275 (582)
T PF09731_consen 246 ESDLNSLIAHAKERIDALQKELAELKEEEE 275 (582)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888888888876655443
No 165
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.82 E-value=1e+02 Score=33.71 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=35.6
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA 901 (967)
Q Consensus 853 S~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~ 901 (967)
..+....++.-.--...|.++..+..++..|..++-.|..+.+.++...
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~ 72 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYN 72 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555567788888888888888888888888888777653
No 166
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=68.59 E-value=3.8e+02 Score=35.37 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=49.3
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHH------
Q 002095 859 LRQKEGELASYMSRLASMESIRD-------SLAEELVKMTAQCEKLRAEA----AILPGIQAELDALRRRHSAA------ 921 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd-------~L~eELVrLt~EnEel~~e~----~~v~~Le~eleeLqqRYeTl------ 921 (967)
|+..+.++.++...+.+++..|. .+..|+..+..+.-.+.... ..+..+...+..++..-++.
T Consensus 694 i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~s 773 (1200)
T KOG0964|consen 694 IEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGS 773 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Confidence 33444555555555555555544 45555555544443333222 23444444444444443332
Q ss_pred ---HHHhccchhHHHHHHHhHHHHHHHHHHHHH
Q 002095 922 ---LELMGERDEELEELRADIMDLKEMYREQVN 951 (967)
Q Consensus 922 ---LELLGEKsEeVEELraDV~DVKeMYR~QId 951 (967)
.||--|-.|++.-|..+|.+++.=++....
T Consensus 774 el~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~ 806 (1200)
T KOG0964|consen 774 ELFSQLTPEELERLSKLNKEINKLSVKLRALRE 806 (1200)
T ss_pred HHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445567777778888888777775553
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.42 E-value=73 Score=36.37 Aligned_cols=54 Identities=28% Similarity=0.509 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 374 KMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRRE 429 (967)
Q Consensus 374 ~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke 429 (967)
.|+.++++|..++..+.... ..+...-.+|-.....++..+.....+++.+..+
T Consensus 68 ~LE~e~~~l~~el~~le~e~--~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 68 ELEKEREELDQELEELEEEL--EELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433322 2233333455555555555555555555555444
No 168
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=68.36 E-value=42 Score=30.58 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=47.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAA----ILPGIQAELDALRRRH 918 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~----~v~~Le~eleeLqqRY 918 (967)
.|...|+-++-.|++|+.+-..|..+--.++.-|-+|...+.++...+. ++..+..++..|+.|+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788899999999999999999998888888888777766665442 2344455555555554
No 169
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=68.16 E-value=1.9e+02 Score=31.56 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 730 RANQLEEEIKELRRKHKQ 747 (967)
Q Consensus 730 r~~~LEeeL~eLr~k~~~ 747 (967)
.+..+..++..++..+..
T Consensus 144 kL~~ANeei~~v~~~~~~ 161 (207)
T PF05010_consen 144 KLEKANEEIAQVRSKHQA 161 (207)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 344444455555554443
No 170
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.00 E-value=1.6e+02 Score=30.62 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 371 EIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTL 426 (967)
Q Consensus 371 ~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~L 426 (967)
++..+.+.+..+...+..++..- .........+.+|+.+++..+..+.++...+
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDL--QELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443322 1222445666677777777766666655533
No 171
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=67.96 E-value=38 Score=34.94 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=53.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHH
Q 002095 866 LASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLK 943 (967)
Q Consensus 866 la~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVK 943 (967)
+...+.++..+..+|+.+..+|-..-.+++.|+....-+..|+.++++|+..|.+. .++.++++.+++
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~----------~~~~e~~l~~~~ 82 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTA----------KEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44467777778889999999999999999999988888899999999999988763 445555555554
No 172
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.66 E-value=3.6e+02 Score=34.70 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHH
Q 002095 410 ATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQ 449 (967)
Q Consensus 410 ~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~Iaq 449 (967)
..|+.|...|.|-.+.+|-+-.+ +...+.|||..+-.
T Consensus 451 e~lq~kneellk~~e~q~~Enk~---~~~~~~ekd~~l~~ 487 (861)
T PF15254_consen 451 ELLQSKNEELLKVIENQKEENKR---LRKMFQEKDQELLE 487 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 34455555555555544433222 34456666665543
No 173
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=67.23 E-value=63 Score=29.49 Aligned_cols=59 Identities=15% Similarity=0.388 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 624 PLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQI 689 (967)
Q Consensus 624 PLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~el 689 (967)
-||-=+|.||..|..+...|+.-=..|...+. .+.+++..++.+...+..++..|.+++
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~-------~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFE-------QTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666999999999999999987555555544 444444445555444444444444444
No 174
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.67 E-value=83 Score=39.04 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=6.6
Q ss_pred HHHHhhHHHHHHHH
Q 002095 437 AALLKEKDEIINQV 450 (967)
Q Consensus 437 ~a~LkEKDE~IaqL 450 (967)
...|.||...|.+|
T Consensus 487 ~~~L~e~~~~ve~L 500 (652)
T COG2433 487 EKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555554
No 175
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.49 E-value=5.1e+02 Score=36.00 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=70.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------hhhHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAI-----------------------LPGIQAE 910 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~-----------------------v~~Le~e 910 (967)
.+...|.+.+.+...++.++...+.+...+..++..+...++.+....+. -..|...
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~ 1068 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHAR 1068 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHH
Confidence 66777777777777777777777777777766666665544433333211 1345666
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 002095 911 LDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLV 954 (967)
Q Consensus 911 leeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeLl 954 (967)
|..-..|-..+..=+|=.-.+++.|..+|.+++.-|+..-..+.
T Consensus 1069 l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~ 1112 (1486)
T PRK04863 1069 LSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVV 1112 (1486)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788888899999999999999999999977665543
No 176
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.28 E-value=66 Score=34.66 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHH
Q 002095 585 QAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAI 632 (967)
Q Consensus 585 ~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtL 632 (967)
-..|.|.+|++|+.+|+.++..++..++.-........+.+=+|.|.|
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL 140 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL 140 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH
Confidence 345777888888888888888776666554222333344455566554
No 177
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.97 E-value=99 Score=36.66 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 570 QALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERS 649 (967)
Q Consensus 570 qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~s 649 (967)
.++.++|....+.+.........+..++.-+.+.|++-+-|++-|-..+-+.|.=-..-|.+|+..++. -|+++++.
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~---~EEK~~Yq 295 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELAS---MEEKMAYQ 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHH
Confidence 344444444444444444445555666666666677666665555444444433344456666655543 34455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLE 686 (967)
Q Consensus 650 L~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE 686 (967)
...|. |++.+-+.....|+..+|
T Consensus 296 s~eRa--------------Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 296 SYERA--------------RDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHH--------------hHHHHHHHHHHHHHHHHH
Confidence 44443 445555666666677776
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.73 E-value=2.4e+02 Score=34.09 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (967)
Q Consensus 669 r~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er 707 (967)
..+..++.....+++....++...+.....|...+..-+
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~ 416 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWR 416 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344445555555666666666665544444444444333
No 179
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.69 E-value=80 Score=28.87 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=41.4
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 002095 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM 925 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELL 925 (967)
+.++|.-+..+-+.|.-|+..-..|.++-..|..+++.|+.+ ...|+.+....+.|..++|.-+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e---n~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE---NEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666666666666666666666666654 4455677777777877777543
No 180
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=65.65 E-value=32 Score=32.65 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=48.9
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHh----hhhhHHHHHHHHHHHHHHHHH
Q 002095 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQ---CEKLRAEAA----ILPGIQAELDALRRRHSAALE 923 (967)
Q Consensus 857 A~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~E---nEel~~e~~----~v~~Le~eleeLqqRYeTlLE 923 (967)
..|..++.+...++.++..|.+.|+.++.+|-.++.. .+.+.++++ ++..++.++.+++.+++.+|-
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888899999999999999999999999873 455555443 355566666666666666653
No 181
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.42 E-value=59 Score=28.93 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002095 594 RRDIEDLQRRYQASERRCEELVT 616 (967)
Q Consensus 594 R~EIs~Le~RLEeaEsRaEELSs 616 (967)
+..+-.+++||++++.|+.+|..
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ 46 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQ 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666544
No 182
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.01 E-value=65 Score=30.63 Aligned_cols=50 Identities=22% Similarity=0.487 Sum_probs=38.4
Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHH
Q 002095 395 DAELETLR----EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV 450 (967)
Q Consensus 395 ~~~~~~L~----eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqL 450 (967)
+.-|..|+ ..|-.||+.|+..+..+.+|.+.|+++... .-.||.+.|+.|
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~------e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT------EREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhh
Confidence 45577778 667789999999999999999988887543 344777777654
No 183
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=63.91 E-value=2.1e+02 Score=30.98 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002095 627 RQIEAIQETTARRAEAWAAVE 647 (967)
Q Consensus 627 RQIEtLQ~q~asqsenWe~iE 647 (967)
..-|.+=..|..++..|..+|
T Consensus 84 ~~AE~~Y~~F~~Qt~~LA~~e 104 (192)
T PF11180_consen 84 ARAEAIYRDFAQQTARLADVE 104 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777766
No 184
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.90 E-value=2.7e+02 Score=31.97 Aligned_cols=49 Identities=27% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 438 a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk 486 (967)
.+...=++.+..|..+-+.|.+..-....++-.||.+...+..++..|+
T Consensus 144 gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 144 GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556777777888888888887777777888877777766666654
No 185
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.70 E-value=3e+02 Score=31.97 Aligned_cols=108 Identities=23% Similarity=0.321 Sum_probs=60.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hhhhhHHHH
Q 002095 363 RQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRR-E---QNKKSDAAA 438 (967)
Q Consensus 363 r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKk-e---~~k~s~~~a 438 (967)
|+|+||..-+--|....+.-+.+-+.++.. .+.+..|-.++.++...+..+.+.--. . ......++.
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlM---------AEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~ 72 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLM---------AEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQ 72 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHH
Confidence 567787777777766666655444444332 222334555555555444333220000 0 002245566
Q ss_pred HHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002095 439 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELE 479 (967)
Q Consensus 439 ~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElE 479 (967)
+|.+=-+....|-.|++.|=.+-.....-||=||.++....
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 77777777777777777776666666666666776666543
No 186
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.40 E-value=3.3e+02 Score=32.44 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=38.9
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 002095 859 LRQKEGELASYMSRLASMESIRDSLAEELV-KMTAQCEKLRAEAAILPGIQAELDALRRRHSA 920 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd~L~eELV-rLt~EnEel~~e~~~v~~Le~eleeLqqRYeT 920 (967)
+...-.|+..++....+|+..-+.|.+.+- .+.--++.|+++--+...|+.++.|+-+-|+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~ 276 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQN 276 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666666666666665433 23334556666667777888888888877775
No 187
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=61.99 E-value=3.7e+02 Score=32.83 Aligned_cols=81 Identities=26% Similarity=0.251 Sum_probs=47.6
Q ss_pred hhhhccccCcccccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 312 VEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
|+...-||-+++--.-|-...+-+++ .+.|+.+|......| ..+++.|..+|++|-..+-+...
T Consensus 229 Vek~lfdY~~~~Y~~fl~~~~~~~~~------e~Elk~~f~~~~~~i----------~~~i~~lk~~n~~l~e~i~ea~k 292 (622)
T COG5185 229 VEKLLFDYFTESYKSFLKLEDNYEPS------EQELKLGFEKFVHII----------NTDIANLKTQNDNLYEKIQEAMK 292 (622)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCch------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677666655554443333332 334555555544444 46899999999999777765333
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 392 KTNDAELETLREEYHQRVATLERKVYALTK 421 (967)
Q Consensus 392 ~~~~~~~~~L~eEy~qRI~aLErKlq~L~K 421 (967)
..+.|..|+.|...|.+
T Consensus 293 -------------~s~~i~~l~ek~r~l~~ 309 (622)
T COG5185 293 -------------ISQKIKTLREKWRALKS 309 (622)
T ss_pred -------------HHHHHHHHHHHHHHHhh
Confidence 33566666666665543
No 188
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=61.79 E-value=44 Score=37.66 Aligned_cols=90 Identities=26% Similarity=0.271 Sum_probs=59.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHH
Q 002095 365 AQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKD 444 (967)
Q Consensus 365 ~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKD 444 (967)
+.+...+|..++.+.+++.-+|+-++-.-..+|+ -.++.|++|++.|..=. +.+.+.|++|+
T Consensus 49 l~s~L~QIt~iQaeI~q~nlEielLkleKeTADl--------tH~~~L~~K~~~Lq~m~----------shLe~VLk~K~ 110 (277)
T PF15003_consen 49 LFSRLRQITNIQAEIDQLNLEIELLKLEKETADL--------THPDYLAEKCEALQSMN----------SHLEAVLKEKD 110 (277)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHhh--------hCHHHHHHHHHHHHHHH----------HHHHHHHHhHH
Confidence 3344557777788888888888877775555664 45677888888775333 36789999999
Q ss_pred HHHHHHHH--HhHHhhHHHHHHHHHHHHHH
Q 002095 445 EIINQVMA--EGEELSKKQAAQEAQIRKLR 472 (967)
Q Consensus 445 E~IaqLmE--EGEKLSKkELq~sniIKKLR 472 (967)
.+|+-|++ =|+.|-..---|+..+.=|.
T Consensus 111 ~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~ 140 (277)
T PF15003_consen 111 RLRQRLQKPYCQENLPVEAQYHRYVVELLE 140 (277)
T ss_pred HHHHHHHhhhhhcCccchhhhhHHHHHHHH
Confidence 99999885 24444443333444444333
No 189
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=61.69 E-value=2.4e+02 Score=30.63 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 626 LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINV 684 (967)
Q Consensus 626 LRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~ 684 (967)
+.+++..-.+....-..|+.-=..++.+|.........+...-.+++.++.++..++..
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666666666777777777777777777777776666666666666666665555544
No 190
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=61.31 E-value=4.5e+02 Score=33.59 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 625 LLRQIEAIQETTARRAEAWAAVERSLNLRL 654 (967)
Q Consensus 625 LLRQIEtLQ~q~asqsenWe~iE~sL~~RL 654 (967)
+.--|-.|+.+...-+.+-.+++..|..+-
T Consensus 522 ~~~~i~~leeq~~~lt~~~~~l~~el~~~~ 551 (698)
T KOG0978|consen 522 LELKIGKLEEQERGLTSNESKLIKELTTLT 551 (698)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Confidence 333445555555555555555554444333
No 191
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=60.78 E-value=4e+02 Score=32.84 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 674 RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEAL 753 (967)
Q Consensus 674 kl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~~~elqea~ 753 (967)
++.++..++...+++.-....+...|...|...-. +......++....+++..|+++|...|.-|+.++.-..
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~-------ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEK-------EKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444444444444555555555555543211 11222355566677789999999999999999888777
Q ss_pred HHHHHHHHHHHH
Q 002095 754 MHRELLQQEIER 765 (967)
Q Consensus 754 ~~~~~Lqq~lE~ 765 (967)
.+.-.+..++..
T Consensus 494 EHLasmNeqL~~ 505 (518)
T PF10212_consen 494 EHLASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHHHH
Confidence 776656555543
No 192
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.62 E-value=2.7e+02 Score=30.78 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 626 LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (967)
Q Consensus 626 LRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~ 705 (967)
..+++-+-..+....++|+..+.-| .++.+........-...-+.|+.+..-++.||.-+..++.+..+....+.
T Consensus 10 ~~~lek~k~~i~~e~~~~e~ee~~L----~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~- 84 (230)
T PF10146_consen 10 TLELEKLKNEILQEVESLENEEKCL----EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQ- 84 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002095 706 ERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (967)
Q Consensus 706 Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~ 745 (967)
.+.+.+..|..+++.+|..+
T Consensus 85 --------------------r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 85 --------------------RLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHH
No 193
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.54 E-value=2.6e+02 Score=30.70 Aligned_cols=57 Identities=28% Similarity=0.425 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 560 EAGERETMLVQALEELRQTLSRTEQQAVF---REDMLRRDIEDLQRRYQASERRCEELVT 616 (967)
Q Consensus 560 Eaeere~~L~qqIedLRe~L~Raeq~a~~---rEeeLR~EIs~Le~RLEeaEsRaEELSs 616 (967)
..++-+.+|.+-|.|.+..|..+.+..+. +...|..++..++.+.+..+.++..+-+
T Consensus 21 k~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 21 KAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456777788888877766655443 3444555666666666666666665544
No 194
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=58.65 E-value=89 Score=27.62 Aligned_cols=32 Identities=41% Similarity=0.494 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 002095 903 ILPGIQAELDALRRRHSAALELMGERDEELEE 934 (967)
Q Consensus 903 ~v~~Le~eleeLqqRYeTlLELLGEKsEeVEE 934 (967)
..+.++..+..|+.||+.+..++.++-..++|
T Consensus 74 ~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 74 DSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45779999999999999999999988877765
No 195
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.31 E-value=4.2e+02 Score=32.30 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC-C-cCchHHHHHHHHHHHHHHHHHHHHH
Q 002095 569 VQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ-VP-E-STRPLLRQIEAIQETTARRAEAWAA 645 (967)
Q Consensus 569 ~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSss-vs-e-ATrPLLRQIEtLQ~q~asqsenWe~ 645 (967)
.+++.++...++.........+.+|..=-.-...-|+.-+.+.+.|..+ +. . ...+.-=.++.|+.......+-++.
T Consensus 213 l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~ 292 (511)
T PF09787_consen 213 LRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQL 292 (511)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHH
Confidence 3344444444444433333322222221111233455566677777662 22 1 1111101234455556666666777
Q ss_pred HHHHH
Q 002095 646 VERSL 650 (967)
Q Consensus 646 iE~sL 650 (967)
++..+
T Consensus 293 l~~Qi 297 (511)
T PF09787_consen 293 LERQI 297 (511)
T ss_pred HHHHH
Confidence 77666
No 196
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=57.68 E-value=5.3e+02 Score=33.32 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=13.1
Q ss_pred CCCcchh---hhhcccCCCCCCCCcCCC
Q 002095 56 NEGLWPV---MSFMGHKSEGSSPTESSG 80 (967)
Q Consensus 56 ~~~~~~~---~~~~~~~~~~~~~~~~~~ 80 (967)
--+.|.+ +-.+||-.-+..++.+.|
T Consensus 334 kl~i~s~vA~vLHLGNieFEE~~ddsrG 361 (1259)
T KOG0163|consen 334 KLFIWSTVAAVLHLGNIEFEEIPDDSRG 361 (1259)
T ss_pred HHHHHHHHHHHHHccccchhcccCcCCC
Confidence 4466773 335677654444444444
No 197
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.49 E-value=6.1e+02 Score=33.91 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHH
Q 002095 371 EIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV 450 (967)
Q Consensus 371 ~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqL 450 (967)
++..|+..-+.|..+|.++..... ++ .+-.-.|.-||.+++++..+..++|+.+ .....|.--.+.++
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~~~~--e~----~~v~~~i~~le~~~~~~~~~~~~~k~~l------~~~~~El~~~~~~i 720 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQKRRK--EV----SSVESKIHGLEMRLKYSKLDLEQLKRSL------EQNELELQRTESEI 720 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 444555555555555555554221 32 2334577888999998888888766543 22333555555666
Q ss_pred HHHhHHhh
Q 002095 451 MAEGEELS 458 (967)
Q Consensus 451 mEEGEKLS 458 (967)
-+.|-++|
T Consensus 721 ~~~~p~i~ 728 (1141)
T KOG0018|consen 721 DEFGPEIS 728 (1141)
T ss_pred HhhCchHH
Confidence 66777766
No 198
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=56.82 E-value=4.6e+02 Score=32.32 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 625 LLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEER 667 (967)
Q Consensus 625 LLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~er 667 (967)
|==|+.+|-.-+.....-|.+.++....+|+..+.........
T Consensus 374 ld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~ 416 (531)
T PF15450_consen 374 LDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKE 416 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347777777778888888888888888888777776654443
No 199
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.06 E-value=83 Score=32.35 Aligned_cols=67 Identities=28% Similarity=0.380 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL 419 (967)
Q Consensus 340 ~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L 419 (967)
+..|+..+..+|..|...+. .|...+..|..++..|...-...++...-..+.+.|..++.||..|
T Consensus 70 s~eel~~ld~ei~~L~~el~--------------~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELA--------------ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred CchhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555444 6677777788788777776655666666666666666666666655
Q ss_pred H
Q 002095 420 T 420 (967)
Q Consensus 420 ~ 420 (967)
.
T Consensus 136 ~ 136 (169)
T PF07106_consen 136 R 136 (169)
T ss_pred H
Confidence 4
No 200
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=55.91 E-value=3e+02 Score=29.93 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 675 LSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (967)
Q Consensus 675 l~~~~~ri~~LE~els~lr~E~~~L~~qLE~ 705 (967)
+....++|..|+.++..+...+..|...-+.
T Consensus 104 aE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~ 134 (205)
T KOG1003|consen 104 AEAAESQSEELEEDLRILDSNLKSLSAKEEK 134 (205)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 4444455666666666555555555444443
No 201
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=55.83 E-value=6.3e+02 Score=33.61 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHH
Q 002095 904 LPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYR 947 (967)
Q Consensus 904 v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR 947 (967)
+..++..+..++..++++...+|.-...+..++.....++.++.
T Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 867 (1047)
T PRK10246 824 VEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQ 867 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666555555555554444444443
No 202
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.43 E-value=4.3e+02 Score=31.49 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 721 KEEADTQEGRANQLEEEIKELRRKHK 746 (967)
Q Consensus 721 kee~~~le~r~~~LEeeL~eLr~k~~ 746 (967)
..++...+.++..++..+..++..+.
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566666677766655543
No 203
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.26 E-value=1.3e+02 Score=30.49 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHH
Q 002095 877 ESIRDSLAEELVKMTAQCEKLRAEAAIL-PGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEM 945 (967)
Q Consensus 877 es~Rd~L~eELVrLt~EnEel~~e~~~v-~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeM 945 (967)
=.+|..|++=+..++.+++.+-+.+... ..|..+++-|..+.+...++-+.=-++|.+++.||.+++.-
T Consensus 35 ~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~d 104 (126)
T PF07889_consen 35 FVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDD 104 (126)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455556666666666666665555442 33666777777777777777777777778888777776543
No 204
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=54.78 E-value=1.1e+02 Score=27.81 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002095 863 EGELASYMSRLASMESIRDSLAEELVKMTAQCE 895 (967)
Q Consensus 863 EGEla~Lq~ELarLes~Rd~L~eELVrLt~EnE 895 (967)
+.++..|+..+.++...-...-.++-.|+.+.+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd 36 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERD 36 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 205
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.33 E-value=3.9e+02 Score=30.76 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=74.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 002095 855 FESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEE 934 (967)
Q Consensus 855 LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEE 934 (967)
+...|...+.++...+..|...+..-..+.+.|..|..+.+.... +...|+.++...+.|.+.+-.|++-=+.+..-
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~---e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R 295 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQK---EKQELEEEIEETERKLERAEKLISGLSGEKER 295 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccHHHHHhhhcchhhh
Confidence 456677777888888888888888888888888888887776553 46778888999999999888888777777666
Q ss_pred HHHhHHHHHHHHHHHH-HHH
Q 002095 935 LRADIMDLKEMYREQV-NLL 953 (967)
Q Consensus 935 LraDV~DVKeMYR~QI-deL 953 (967)
=...+.+++.-+...+ |-+
T Consensus 296 W~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 296 WSEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp CHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHH
Confidence 6777777777766666 443
No 206
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=53.92 E-value=3e+02 Score=29.30 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 592 MLRRDIEDLQRRYQASERRCEELV 615 (967)
Q Consensus 592 eLR~EIs~Le~RLEeaEsRaEELS 615 (967)
.|+..+..|+.++..++.+...+.
T Consensus 116 ~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 116 KLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445554444444443
No 207
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.89 E-value=1.4e+02 Score=32.66 Aligned_cols=93 Identities=26% Similarity=0.300 Sum_probs=49.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHH-----H
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDA----LRRRHSAALE-----L 924 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~elee----LqqRYeTlLE-----L 924 (967)
.|.+.++++..|+..++..+..+++.-+....+|..|..+.+.+ ...+.++.- +-.+++..++ +
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~-------~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~ 125 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI-------EETRQELVPLMEQMIDELEQFVELDLPFL 125 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34455555555555555555555555555555555554444444 444444332 2333333333 4
Q ss_pred hccchhHHHHHHHhHH----HHHHHHHHHHHHH
Q 002095 925 MGERDEELEELRADIM----DLKEMYREQVNLL 953 (967)
Q Consensus 925 LGEKsEeVEELraDV~----DVKeMYR~QIdeL 953 (967)
.-|+.++++.|+.-+. .+-+-||..++-+
T Consensus 126 ~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~ 158 (251)
T PF11932_consen 126 LEERQERLARLRAMLDDADVSLAEKFRRVLEAY 158 (251)
T ss_pred hHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHH
Confidence 5568888888887773 3456677776544
No 208
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.87 E-value=1.4e+02 Score=34.70 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=66.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHhccch
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAAL----ELMGERD 929 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlL----ELLGEKs 929 (967)
+|...+++++-|.+.++-.|..+..+..+..+|-..|.+++.+..+- ...|..-|++++ .|+--+-
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~lay----------qq~L~~eyQatf~eq~~ml~kRQ 200 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAY----------QQELNDEYQATFVEQHSMLDKRQ 200 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH----------HHHHHHHhhcccccchhhhHHHH
Confidence 78888999999999999999999999888888888887766554422 234455565555 4666666
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002095 930 EELEELRADIMDLKEMYREQVNLLVNKIQVM 960 (967)
Q Consensus 930 EeVEELraDV~DVKeMYR~QIdeLlkQi~~L 960 (967)
.-+-.|+..|+||---+|...+--....+.+
T Consensus 201 ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~ 231 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNLLQLESDMKESM 231 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 7777777777777555565554333333333
No 209
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=53.62 E-value=6.1e+02 Score=32.77 Aligned_cols=247 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002095 509 LLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAV- 587 (967)
Q Consensus 509 ~lqe~iek~q~eL~a~k~~~~~~L~~AKe~e~lAE~ra~~Ea~~~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~- 587 (967)
..|+.|+..|.+|+.+...+..+-.-.. ..++...+-+-+....+.....|+.++.|.++.|.-..-++-
T Consensus 345 R~QEKI~RYQ~Dl~Elt~RLEEQ~~VVe---------eA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQ 415 (1480)
T COG3096 345 RQQEKIERYQADLEELTIRLEEQNEVVE---------EANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQ 415 (1480)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hccC
Q 002095 588 ---------------------------------FREDMLRRDIEDLQRRYQASERRCEELV---------------TQVP 619 (967)
Q Consensus 588 ---------------------------------~rEeeLR~EIs~Le~RLEeaEsRaEELS---------------ssvs 619 (967)
..++.+-..+=.|++|+--+.+-+.++- +..-
T Consensus 416 YQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~ 495 (1480)
T COG3096 416 YQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAW 495 (1480)
T ss_pred HHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHH
Q ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 620 ESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNE--RLSQTLSRINVLEAQISCLRAEQT 697 (967)
Q Consensus 620 eATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~e--kl~~~~~ri~~LE~els~lr~E~~ 697 (967)
+..+-|||++-+-|.+... ...|..|+.+++-+++.-+.-++-+++ +-.........+|..-...-+-+.
T Consensus 496 ~~A~~llR~~p~q~~~aq~--------~~~lr~~l~eLEqr~~qQqsa~~Ll~~f~kr~~~~l~ae~lE~~~~e~eal~E 567 (1480)
T COG3096 496 DVARELLREGPDQRHLAEQ--------VQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIE 567 (1480)
T ss_pred HHHHHHHHhChhhHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002095 698 QLTKSLEKERQRAAENRQEYLAAKEEADTQEGRA---NQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVD 772 (967)
Q Consensus 698 ~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~---~~LEeeL~eLr~k~~~elqea~~~~~~Lqq~lE~Ek~~r~e 772 (967)
.|...+...+.+....|++....+..++....+. =..+..|+.|+..--..+.....-..-+++.++.++....+
T Consensus 568 ~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~AP~Wl~Aq~ALe~L~eQSGe~~~dSq~V~~~MQ~~L~~Ere~t~~ 645 (1480)
T COG3096 568 SLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVE 645 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH
No 210
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=53.13 E-value=3.3e+02 Score=29.73 Aligned_cols=50 Identities=34% Similarity=0.477 Sum_probs=28.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhhh------------hHHHHHHhhHHHHHHHHHHHhHHhhHH
Q 002095 411 TLERKV-YALTKERDTLRREQNKK------------SDAAALLKEKDEIINQVMAEGEELSKK 460 (967)
Q Consensus 411 aLErKl-q~L~KErD~LKke~~k~------------s~~~a~LkEKDE~IaqLmEEGEKLSKk 460 (967)
.+|+|| -.|-+|.+.||.+.... ..+...|+||+++|=.|-.+=-|+=.+
T Consensus 24 ~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqk 86 (205)
T PF12240_consen 24 QLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQK 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 34556666666654311 234567888888887776665554433
No 211
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.11 E-value=49 Score=32.32 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 349 REMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 349 ~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
..|..|+..+..--.++..+.+++..|.++|..|+-++..|+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655566666666666777766666666666554
No 212
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=52.93 E-value=1.8e+02 Score=36.02 Aligned_cols=85 Identities=12% Similarity=0.233 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 626 LRQIEAIQETTARRAEAWAAVERSL--NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSL 703 (967)
Q Consensus 626 LRQIEtLQ~q~asqsenWe~iE~sL--~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qL 703 (967)
.+.++.++..|.....-|.+.-..| -..+.+++.+........-.--..+......+..+-.++...+.....+..+|
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999888888 67778887777766653100001233333444555555555555555555555
Q ss_pred HHHHHHH
Q 002095 704 EKERQRA 710 (967)
Q Consensus 704 E~Er~r~ 710 (967)
+..+..+
T Consensus 243 ~~~~~~~ 249 (555)
T TIGR03545 243 QNDKKQL 249 (555)
T ss_pred HHhHHHH
Confidence 5544433
No 213
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=52.75 E-value=2.4e+02 Score=27.87 Aligned_cols=88 Identities=16% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 347 LKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTL 426 (967)
Q Consensus 347 l~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~L 426 (967)
+..++.-|+..|++. ---+-+|..+.++|+..+..|+... +.+++||..|++++-.+.+..+.
T Consensus 14 l~n~La~Le~slE~~-------K~S~~eL~kqkd~L~~~l~~L~~q~---------~s~~qr~~eLqaki~ea~~~le~- 76 (107)
T PF09304_consen 14 LQNRLASLERSLEDE-------KTSQGELAKQKDQLRNALQSLQAQN---------ASRNQRIAELQAKIDEARRNLED- 76 (107)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHH-------HhhHHHHHHhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHH
Q 002095 427 RREQNKKSDAAALLKEKDEIINQVM 451 (967)
Q Consensus 427 Kke~~k~s~~~a~LkEKDE~IaqLm 451 (967)
.+...-.-..--.=.+||--|=+|.
T Consensus 77 eK~ak~~l~~r~~k~~~dka~lel~ 101 (107)
T PF09304_consen 77 EKQAKLELESRLLKAQKDKAILELK 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
No 214
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.69 E-value=3.4e+02 Score=29.57 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=16.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 365 AQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 365 ~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
+..+...++.+...++.|+..++.+-.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777765443
No 215
>PF14992 TMCO5: TMCO5 family
Probab=51.79 E-value=1.2e+02 Score=34.40 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002095 410 ATLERKVYALTKERDTLRRE 429 (967)
Q Consensus 410 ~aLErKlq~L~KErD~LKke 429 (967)
+.||++-..+++-...|.++
T Consensus 73 ~~LE~~ne~l~~~~~elq~k 92 (280)
T PF14992_consen 73 AKLEKENEHLSKSVQELQRK 92 (280)
T ss_pred HHHhhhhHhhhhhhhhhhhh
Confidence 66677766666666655444
No 216
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.67 E-value=6.7e+02 Score=32.67 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 397 ELETLREEYHQRVATLERKVYALTKERD 424 (967)
Q Consensus 397 ~~~~L~eEy~qRI~aLErKlq~L~KErD 424 (967)
....+..+|++.++...-|++-++++-|
T Consensus 643 ~~~~~~~k~~e~l~~~~~kyK~lI~~lD 670 (970)
T KOG0946|consen 643 EQTQLAEKYHEELDDIQQKYKGLIRELD 670 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555544444
No 217
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=51.51 E-value=5.5e+02 Score=31.58 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 730 RANQLEEEIKELRRKHKQ 747 (967)
Q Consensus 730 r~~~LEeeL~eLr~k~~~ 747 (967)
.+..|+.++..++.++..
T Consensus 347 ~le~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDK 364 (563)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666655555533
No 218
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=50.35 E-value=1.2e+02 Score=27.58 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 002095 371 EIAKMMNENEHL 382 (967)
Q Consensus 371 ~~a~L~e~n~~L 382 (967)
+|+.|.+.+|.|
T Consensus 6 ~~~~Lr~rLd~~ 17 (69)
T PF14197_consen 6 EIATLRNRLDSL 17 (69)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 219
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=50.27 E-value=5.6e+02 Score=31.38 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=24.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~ 892 (967)
+....|+ .|.+...-.++..|...=..+...-+.-.+
T Consensus 529 rae~~l~--~gdL~~A~~~~~~L~g~~~~~a~dW~~~ar 565 (582)
T PF09731_consen 529 RAEYYLE--RGDLDKAARELNQLKGWARKLAADWLKEAR 565 (582)
T ss_pred HHHHHHH--CCCHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4445554 577777777888887776666665555444
No 220
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=49.93 E-value=1.8e+02 Score=31.96 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=6.9
Q ss_pred HHHHHHhHHhhHHHH
Q 002095 448 NQVMAEGEELSKKQA 462 (967)
Q Consensus 448 aqLmEEGEKLSKkEL 462 (967)
.+.|++++.|.++.-
T Consensus 130 ~~~~~~~~~lk~~~~ 144 (216)
T KOG1962|consen 130 EKAMKENEALKKQLE 144 (216)
T ss_pred HHHHHHHHHHHHhhh
Confidence 444444444444433
No 221
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=49.63 E-value=28 Score=33.99 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHH
Q 002095 883 LAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDL 942 (967)
Q Consensus 883 L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DV 942 (967)
+..++..|..+....+..+..++.++.++..++.+++.++..+.... ++..|=.+|.++
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~~-~~~~ll~~l~~~ 62 (144)
T PF04350_consen 4 LQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAEE-EIPSLLEDLNRL 62 (144)
T ss_dssp --------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHH
Confidence 45566777777777778888999999999999999999999999874 466666666655
No 222
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.52 E-value=5e+02 Score=30.54 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 628 QIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE 704 (967)
.|+.++.....=...+...-..|..=-.++...++-...||.-+|.++..+....+.+-.+++.++....+++..+.
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~ 297 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVS 297 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45555555555555555555555554466667777777788888887777766666666666666666555555444
No 223
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.05 E-value=5e+02 Score=30.40 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcCchH---HHHHHHHHHHHHH
Q 002095 596 DIEDLQRRYQASERRCEELVTQVPESTRPL---LRQIEAIQETTAR 638 (967)
Q Consensus 596 EIs~Le~RLEeaEsRaEELSssvseATrPL---LRQIEtLQ~q~as 638 (967)
-|..|..++..++.+..+++...++.+-++ -+||+.|+.++..
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888877655544333 3466666666543
No 224
>PRK10698 phage shock protein PspA; Provisional
Probab=48.38 E-value=4e+02 Score=29.08 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002095 638 RRAEAWAAVERSLNLRLQEAEA 659 (967)
Q Consensus 638 sqsenWe~iE~sL~~RL~elE~ 659 (967)
.+...++.+|......-+.++.
T Consensus 163 ~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 163 EAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHhH
Confidence 3344555555555555554443
No 225
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.60 E-value=1.2e+02 Score=28.81 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002095 407 QRVATLERKVYALTKERDTLRREQNKK 433 (967)
Q Consensus 407 qRI~aLErKlq~L~KErD~LKke~~k~ 433 (967)
.+|-.+-.+...+..+.+.|+.+.+..
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~ 55 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNEL 55 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444444444455555566665554443
No 226
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.53 E-value=58 Score=32.11 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 350 EMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 350 ~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
.|..|+..+..-..++..+..+++.|.++|..|+-++..|++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555555555444
No 227
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.19 E-value=1.9e+02 Score=33.21 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=42.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHH
Q 002095 901 AAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLL 953 (967)
Q Consensus 901 ~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeL 953 (967)
...+..|+.++.+++.+|..+..-||+..=.|-.|+..+..++......+..+
T Consensus 213 ~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 213 LSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999999999999988866655544433
No 228
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.54 E-value=3.2e+02 Score=27.50 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 651 NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (967)
Q Consensus 651 ~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~ 698 (967)
..+++.++.++..+..+++.+..++..+...++....++..++.-..+
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665555544444444444444433333
No 229
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.76 E-value=4e+02 Score=28.37 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcCchHHHHHHHHHHHHH
Q 002095 562 GERETMLVQALEELRQTLSRTEQQAV---FREDMLRRDIEDLQRRYQASERRCEELVTQVP-ESTRPLLRQIEAIQETTA 637 (967)
Q Consensus 562 eere~~L~qqIedLRe~L~Raeq~a~---~rEeeLR~EIs~Le~RLEeaEsRaEELSssvs-eATrPLLRQIEtLQ~q~a 637 (967)
++-+.+|.+.|.++...|..+....+ .....|..++..+...+...+.++..+-...- +.-+-.|..+..++.+..
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33345677777777777776654443 34566777777777777777777777655433 223344444444444333
Q ss_pred H
Q 002095 638 R 638 (967)
Q Consensus 638 s 638 (967)
.
T Consensus 102 ~ 102 (221)
T PF04012_consen 102 R 102 (221)
T ss_pred H
Confidence 3
No 230
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=45.73 E-value=4.6e+02 Score=29.04 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=5.8
Q ss_pred HHHHHHhhhhhhHH
Q 002095 854 AFESILRQKEGELA 867 (967)
Q Consensus 854 ~LqA~LRrrEGEla 867 (967)
+|+.+|+-+-.||.
T Consensus 186 ~lq~QL~~L~~EL~ 199 (246)
T PF00769_consen 186 RLQEQLKELKSELE 199 (246)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 231
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=45.24 E-value=77 Score=30.01 Aligned_cols=66 Identities=24% Similarity=0.352 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 624 PLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQT 697 (967)
Q Consensus 624 PLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~ 697 (967)
++..||+.|...++.-...-+.+|+.|..+-=.-+.+. .+.+.+..++.++...|.+|..+|.++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~--------~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARR--------SLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHH--------HHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 45789999999999999999999998866543322221 2335556677778888888888876554
No 232
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.93 E-value=46 Score=29.34 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 364 QAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 364 ~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
++..+..+++.|..+|+.|+.++..|+.
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556677788888888888877743
No 233
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.57 E-value=1.1e+02 Score=32.08 Aligned_cols=50 Identities=14% Similarity=0.314 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Q 002095 874 ASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMG 926 (967)
Q Consensus 874 arLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLG 926 (967)
..+..+...+..|+-.|..+++.|+.+ +..|..++..++.-|.+++..|-
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e---~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKE---LEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666677777777777654 66777788888888888887763
No 234
>PRK11519 tyrosine kinase; Provisional
Probab=44.29 E-value=7.8e+02 Score=31.29 Aligned_cols=52 Identities=8% Similarity=0.227 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (967)
Q Consensus 369 ~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~ 420 (967)
..++..+....+.....+..++.+..--++..-..-+.+.+..++.++..+.
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~ 324 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELT 324 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555444333333333444455555555554443
No 235
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=44.27 E-value=98 Score=29.38 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=49.6
Q ss_pred ccccccccccccCCcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 002095 324 EEQRLSSEANVSVSADSVC--ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETL 401 (967)
Q Consensus 324 ~~~~~~~~~~~~~s~~~~~--e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L 401 (967)
|...|-....++.+.++-. +..-|+.||+-|...++. --++++-..+|-.|+.++-.++.-....+
T Consensus 4 kI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~--------nPevtr~A~EN~rL~ee~rrl~~f~~~ge---- 71 (86)
T PF12711_consen 4 KIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH--------NPEVTRFAMENIRLREELRRLQSFYVEGE---- 71 (86)
T ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHHHHhhH----
Confidence 3444444444555555543 446788888888877774 45677888888888888888777443333
Q ss_pred HHHHHHHHHHHHHH
Q 002095 402 REEYHQRVATLERK 415 (967)
Q Consensus 402 ~eEy~qRI~aLErK 415 (967)
++--.+-|+.|+..
T Consensus 72 rE~l~~eis~L~~~ 85 (86)
T PF12711_consen 72 REMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHhh
Confidence 33334555555543
No 236
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.19 E-value=7.8e+02 Score=31.30 Aligned_cols=55 Identities=7% Similarity=0.194 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTK 421 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~K 421 (967)
=+..++..+..+.++....++.++.+.+--++..-...+.+++..++..+..+..
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~ 325 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555543333333334455666666666555433
No 237
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=43.96 E-value=8.4e+02 Score=31.55 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHh
Q 002095 373 AKMMNENEHLKAVIEDLKRKT-------NDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSD----AAALLK 441 (967)
Q Consensus 373 a~L~e~n~~L~~~~e~l~~~~-------~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~----~~a~Lk 441 (967)
..|+.+.+.|+.+|-..+..+ -..-|+-|++||-++++++=.-. -|..-.+.||-+..+... +.-.|+
T Consensus 432 ~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~-gLk~kL~~Lr~E~sKa~~~~~~~~~~L~ 510 (762)
T PLN03229 432 RELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAM-GLQERLENLREEFSKANSQDQLMHPVLM 510 (762)
T ss_pred ccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhcccccccccHHHH
Confidence 457777888888887664221 12568899999999998743222 133333344433333211 123566
Q ss_pred hHHHHHHHHHHH
Q 002095 442 EKDEIINQVMAE 453 (967)
Q Consensus 442 EKDE~IaqLmEE 453 (967)
|| |..|+.|
T Consensus 511 eK---~~kLk~E 519 (762)
T PLN03229 511 EK---IEKLKDE 519 (762)
T ss_pred HH---HHHHHHH
Confidence 66 6666555
No 238
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.29 E-value=5.6e+02 Score=29.34 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 002095 648 RSLNLRLQEAEAKAAA 663 (967)
Q Consensus 648 ~sL~~RL~elE~kl~~ 663 (967)
..-+++|.++|.+++-
T Consensus 14 ~~aLqKIqelE~Qldk 29 (307)
T PF10481_consen 14 TRALQKIQELEQQLDK 29 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445667777766654
No 239
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=43.20 E-value=2.6e+02 Score=35.17 Aligned_cols=56 Identities=11% Similarity=0.261 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 595 RDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTA---RRAEAWAAVERSLNLRLQEAEAKA 661 (967)
Q Consensus 595 ~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~a---sqsenWe~iE~sL~~RL~elE~kl 661 (967)
.-+..+..|+..+|.+..++.. |+..||..|. .....|--.|.-..-|++.-+..+
T Consensus 378 ~~~~~~~~~l~~le~~l~~~~~-----------~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L~l 436 (656)
T PRK06975 378 ASVHQLDSQFAQLDGKLADAQS-----------AQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQLQL 436 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666543 6666666663 445889988888888887655443
No 240
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.18 E-value=4.6e+02 Score=28.30 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002095 593 LRRDIEDLQRRYQASERRCE 612 (967)
Q Consensus 593 LR~EIs~Le~RLEeaEsRaE 612 (967)
|+..+..|+.+++.++++-.
T Consensus 118 l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 118 LQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333
No 241
>PLN02678 seryl-tRNA synthetase
Probab=43.11 E-value=1.1e+02 Score=36.76 Aligned_cols=53 Identities=32% Similarity=0.339 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhh
Q 002095 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELS 458 (967)
Q Consensus 406 ~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLS 458 (967)
+.+|-++..+...+..+.+.|+.+.+..+..-..++...+.+..|++++..|.
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk 84 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELK 84 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 45666666666667777777776665544322222222233445555554443
No 242
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=43.04 E-value=2.3e+02 Score=35.91 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 866 LASYMSRLASMESIRDSLAEELVKMTAQCEKLR 898 (967)
Q Consensus 866 la~Lq~ELarLes~Rd~L~eELVrLt~EnEel~ 898 (967)
+..|+.++..+.+.-..++..++.++.++++..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~ 275 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEAL 275 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 243
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=42.83 E-value=3.1e+02 Score=27.84 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHhHHH
Q 002095 912 DALRRRHSAALELMGERDEELEELRADIMD 941 (967)
Q Consensus 912 eeLqqRYeTlLELLGEKsEeVEELraDV~D 941 (967)
..++.=++-+|.|||.=.+.+..++.-|.+
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455566666677777666666666555443
No 244
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.70 E-value=8.4e+02 Score=31.22 Aligned_cols=47 Identities=17% Similarity=0.041 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002095 442 EKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQV 491 (967)
Q Consensus 442 EKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~KlE~ 491 (967)
.++..|-+|.-| +.++-+...+.|+|+-..+.+++.++...+.++..
T Consensus 137 ~~~~k~~el~~e---~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~ 183 (716)
T KOG4593|consen 137 ANLKKELELLRE---KEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKR 183 (716)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 33445555677777777777777776666554443
No 245
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=42.59 E-value=4.2e+02 Score=27.71 Aligned_cols=103 Identities=23% Similarity=0.337 Sum_probs=60.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHH
Q 002095 367 AKADEIAKMMNENEHLKAVIEDLKRK--TNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKD 444 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l~~~--~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKD 444 (967)
.-.-++..|...|.+|..+...-+.. ..+..+..+-+.|-+..-.|..++..|-.+...|.......++....| .
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rl---e 123 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRL---E 123 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc---c
Confidence 33456667788888887766544332 223445555677777777777777777777666554433323322333 3
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 002095 445 EIINQVMAEGEELSKKQAAQEAQIRKLRAQI 475 (967)
Q Consensus 445 E~IaqLmEEGEKLSKkELq~sniIKKLRaki 475 (967)
++..+||.+-..|+.. +...|+++.-.+
T Consensus 124 e~e~~l~~e~~~l~er---~~e~l~~~~e~v 151 (158)
T PF09744_consen 124 EREAELKKEYNRLHER---ERELLRKLKEHV 151 (158)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4455577777777664 445577766443
No 246
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.39 E-value=4.9e+02 Score=28.38 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=7.4
Q ss_pred HHHHHHhhhhhhHHHHH
Q 002095 854 AFESILRQKEGELASYM 870 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq 870 (967)
.|.-.|-.+---|++|.
T Consensus 256 ~f~~~v~lLn~nI~~L~ 272 (302)
T PF10186_consen 256 RFEYAVFLLNKNIAQLC 272 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 247
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=42.29 E-value=6.3e+02 Score=29.61 Aligned_cols=132 Identities=14% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHh
Q 002095 375 MMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEG 454 (967)
Q Consensus 375 L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEG 454 (967)
|....+.|..++.-|.. ..|+.++++++.|..+.+ .++..........+.+.+|.+|.+==
T Consensus 244 l~~~l~~L~~~lslL~~---------------~~Ld~i~~rl~~L~~~~~----~l~~~~~~~~~~~~~e~KI~eLy~~l 304 (388)
T PF04912_consen 244 LLPALNELERQLSLLDP---------------AKLDSIERRLKSLLSELE----ELAEKRKEAKEDAEQESKIDELYEIL 304 (388)
T ss_pred HHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHHHHH----HHHhccccccccccchhHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 455 EELSKKQAAQEAQIRKLRA-------------QIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVEL 521 (967)
Q Consensus 455 EKLSKkELq~sniIKKLRa-------------kikElEee~k~Lk~KlE~e~~klesikr~~~a~EK~lqe~iek~q~eL 521 (967)
.++..---..=.+|..||. -+..++..+..+..-+..-..-+..+......-.+.....+..+...+
T Consensus 305 ~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 305 PRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERI 384 (388)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 002095 522 GEQK 525 (967)
Q Consensus 522 ~a~k 525 (967)
+.++
T Consensus 385 ~~L~ 388 (388)
T PF04912_consen 385 AKLQ 388 (388)
T ss_pred hccC
No 248
>PRK10869 recombination and repair protein; Provisional
Probab=41.96 E-value=7.6e+02 Score=30.51 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHH
Q 002095 345 EKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKT-NDAELETLREEYHQRVATLERKVY 417 (967)
Q Consensus 345 ~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~-~~~~~~~L~eEy~qRI~aLErKlq 417 (967)
..++.+++..=..+..+.+++..+.........+.+-|+-+++++.... ...+.+.|..+| .|+...++-.+
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~-~~L~n~e~i~~ 225 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEY-KRLANSGQLLT 225 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH-HHHHHHHHHHH
Confidence 4667777777777777777777777777778888888888888887742 345555566554 45555554333
No 249
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=41.51 E-value=1.2e+02 Score=36.01 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (967)
Q Consensus 406 ~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~L 485 (967)
+.+|-++..+...+..+.+.||++.+..+..-..++-+.+....|+++ +|+|+.+++++++++..+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~--------------~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE--------------VKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 456666666666677777777776655443222211111122233333 355555666666655555
Q ss_pred HhHHH
Q 002095 486 VTKLQ 490 (967)
Q Consensus 486 k~KlE 490 (967)
..++.
T Consensus 93 ~~~~~ 97 (425)
T PRK05431 93 EAELE 97 (425)
T ss_pred HHHHH
Confidence 54443
No 250
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.22 E-value=7.4e+02 Score=30.19 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002095 682 INVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 682 i~~LE~els~lr~E~~~L~~qLE 704 (967)
...+|..+..+...+.+++.+|.
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333344444443333
No 251
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=41.18 E-value=7.2e+02 Score=29.99 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 002095 909 AELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKIQVMG 961 (967)
Q Consensus 909 ~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeLlkQi~~L~ 961 (967)
.-|.+|..|.+-+.-|.---.=-|--||.|+.-|+-| |-.++++-.|++.++
T Consensus 347 r~lqeLR~~~delct~versavs~asLrseLeglgpv-KPilEel~Rq~~~~r 398 (558)
T PF15358_consen 347 RGLQELRGRADELCTMVERSAVSVASLRSELEGLGPV-KPILEELGRQLQNSR 398 (558)
T ss_pred HHHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhcccCc-chHHHHHHHHHHhhc
Confidence 3466777777777777766666788999999988776 566788888887776
No 252
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.69 E-value=2.3e+02 Score=25.62 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002095 577 QTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVP 619 (967)
Q Consensus 577 e~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvs 619 (967)
..|.+.+...+.....+..|-..|..|.+.|++|.|-+-+.++
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555566677888889999999999999998876554
No 253
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.41 E-value=3.7e+02 Score=26.70 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=21.4
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002095 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKL 897 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel 897 (967)
|+++-..+..++.++..|...+..+...+-.+..-.+.+
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l 46 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAKETL 46 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455566666666666666666555554444333
No 254
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=40.09 E-value=3.9e+02 Score=26.63 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002095 646 VERSLNLRLQEAEAKA 661 (967)
Q Consensus 646 iE~sL~~RL~elE~kl 661 (967)
+...|..++.++...+
T Consensus 149 ~~~~i~~~~~~l~~~l 164 (202)
T PF01442_consen 149 LEAKISERLEELRESL 164 (202)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 255
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=40.01 E-value=3.6e+02 Score=29.69 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002095 685 LEAQISCLRAEQTQLTKSLEK 705 (967)
Q Consensus 685 LE~els~lr~E~~~L~~qLE~ 705 (967)
+++++.++..+...|..+++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~ 169 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEK 169 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHH
Confidence 566666666666665555554
No 256
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.89 E-value=2.8e+02 Score=30.74 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 673 ERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 673 ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE 704 (967)
+.+.+.+.++..+-.+...++.++..|+..++
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~e 166 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYE 166 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444433
No 257
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.65 E-value=2.6e+02 Score=33.97 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 002095 883 LAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM-GERDEELEELRADIMDLKEMYREQVNLLVNKIQVMG 961 (967)
Q Consensus 883 L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELL-GEKsEeVEELraDV~DVKeMYR~QIdeLlkQi~~L~ 961 (967)
++.++-.|..+|+.++++. ..|+++...+++|-+.+|+=. .+-..+.+.|+.+++.+ +.+|++|..|+..+.
T Consensus 71 ~r~~~~~l~~~N~~l~~eN---~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~----~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 71 LRKRLAKLISENEALKAEN---ERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL----QGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcc
Confidence 3445555556666666553 345666677777777777642 12222444444454444 556667766765543
No 258
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=38.33 E-value=6.9e+02 Score=30.94 Aligned_cols=95 Identities=17% Similarity=0.307 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 002095 400 TLREEYHQRVATLERKVYALT-------KERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLR 472 (967)
Q Consensus 400 ~L~eEy~qRI~aLErKlq~L~-------KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLR 472 (967)
-++.-|..||+.|=.++|..- .|...|.+. +...-++|+....+|..-+++++.-|=.+.++.+---
T Consensus 413 LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~r------L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE 486 (518)
T PF10212_consen 413 LIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKR------LESAEKEKESLEEELKEANQNISRLQDELETTRRNYE 486 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 468888888888877766442 222222211 1122335555556666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHH
Q 002095 473 AQIRELEEEKKGLVTKLQVEENKVESIK 500 (967)
Q Consensus 473 akikElEee~k~Lk~KlE~e~~klesik 500 (967)
.|+.-+-+-+-.|++++......++.+|
T Consensus 487 ~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 487 EQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666555444444443
No 259
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=38.22 E-value=55 Score=31.69 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=60.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHH
Q 002095 870 MSRLASMESIRDSLAEELVKMTAQC-EKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYRE 948 (967)
Q Consensus 870 q~ELarLes~Rd~L~eELVrLt~En-Eel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~ 948 (967)
+.....+++.++.+..||=.||..+ ++.. .-|..-+.+-..++.|...+=.-|+|+...++-|+.-|..||..+-.
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN---~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEAN---KMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999998766 4433 34566677778888999999999999999999999999999876543
No 260
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=38.16 E-value=4.8e+02 Score=30.31 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 002095 341 VCELEKLKREMKMMETALQGA------ARQAQAKADEIAKMMNENEHLKAVIEDLKRK 392 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~------~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~ 392 (967)
.+|+|||-..|.+|+.++.+- .|-.|+ ++.+|.++--.|-.++.+.+--
T Consensus 34 V~EVEKLsqTi~ELEEaiLagGaaaNavrdYqr---q~~elneEkrtLeRELARaKV~ 88 (351)
T PF07058_consen 34 VLEVEKLSQTIRELEEAILAGGAAANAVRDYQR---QVQELNEEKRTLERELARAKVS 88 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhh
Confidence 579999999999999888742 255454 7788888888888888776653
No 261
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=37.95 E-value=3.9e+02 Score=29.89 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHH
Q 002095 646 VERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT--KSLEKERQRAAENRQEYLAAKEE 723 (967)
Q Consensus 646 iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~--~qLE~Er~r~~~~r~e~~aakee 723 (967)
+++-|..||-.++.-.+.+-. -....+..+..+++.+|-+..+|+ -+|.++- .+.|. .+
T Consensus 162 l~~eLqkr~~~v~~l~~q~~k----------~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~------q~~~~---ae 222 (289)
T COG4985 162 LERELQKRLLEVETLRDQVDK----------MVEQQVRVINSQLERLRLEKRRLQLNGQLDDEF------QQHYV---AE 222 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH------HHHHH---HH
Confidence 455666677665544332111 112356777788888876655544 3344322 22232 33
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 002095 724 ADTQEGRANQLEEEIKELRRKH 745 (967)
Q Consensus 724 ~~~le~r~~~LEeeL~eLr~k~ 745 (967)
...++.|...|+++|+.|+.++
T Consensus 223 ~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 223 KSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4456777777877777665544
No 262
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=37.50 E-value=2e+02 Score=33.04 Aligned_cols=68 Identities=35% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHh
Q 002095 869 YMSRLASMESIRDSLAEEL----------------------VKMTAQCEKLRAEAAI-LPGIQAELDALRRRHSAALELM 925 (967)
Q Consensus 869 Lq~ELarLes~Rd~L~eEL----------------------VrLt~EnEel~~e~~~-v~~Le~eleeLqqRYeTlLELL 925 (967)
||.=...|.+.|-.+.+|+ |.||.+.+..+++.-. +..=++.-++|...-+-+-+|
T Consensus 162 LqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~M- 240 (302)
T PF07139_consen 162 LQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQM- 240 (302)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q ss_pred ccchhHHHHHHHhH
Q 002095 926 GERDEELEELRADI 939 (967)
Q Consensus 926 GEKsEeVEELraDV 939 (967)
..+++-|||+||
T Consensus 241 --sE~Ql~ELRadI 252 (302)
T PF07139_consen 241 --SEEQLAELRADI 252 (302)
T ss_pred --CHHHHHHHHHHH
No 263
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.30 E-value=1e+03 Score=30.71 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002095 407 QRVATLERKVYALTKER 423 (967)
Q Consensus 407 qRI~aLErKlq~L~KEr 423 (967)
.||.++|+.|-.+.+|.
T Consensus 70 ~ritt~e~rflnaqre~ 86 (916)
T KOG0249|consen 70 ERITTLEKRFLNAQRES 86 (916)
T ss_pred cccchHHHHHHhccCCC
Confidence 68888888887666554
No 264
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=37.18 E-value=3.3e+02 Score=28.23 Aligned_cols=44 Identities=27% Similarity=0.498 Sum_probs=26.0
Q ss_pred HHHHHHHHHHh-HHh--hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 444 DEIINQVMAEG-EEL--SKKQA-AQEAQIRKLRAQIRELEEEKKGLVT 487 (967)
Q Consensus 444 DE~IaqLmEEG-EKL--SKkEL-q~sniIKKLRakikElEee~k~Lk~ 487 (967)
|++|..+|.+- .-+ .|... .....++.|+.++.+..+++..|+.
T Consensus 1 ~eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 1 DEQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred ChHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46787777663 334 33222 1244566677777777777777765
No 265
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.13 E-value=8.4e+02 Score=29.63 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 595 RDIEDLQRRYQASERRCEELVT-QVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE 666 (967)
Q Consensus 595 ~EIs~Le~RLEeaEsRaEELSs-svseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~e 666 (967)
.|+..|.-.|+.||.+.+-=|+ ++|.+-+|+|+----+.-+ .++.+-.++++++..|.+
T Consensus 309 kelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q-------------~~~kkrqnaekql~~Ake 368 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQ-------------YYNKKRQNAEKQLKEAKE 368 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH-------------HHHHHhhhHHHHHHHHHH
Confidence 4666666677777777666543 3677666665433222222 234455666666665433
No 266
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=36.88 E-value=5.7e+02 Score=27.55 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 625 LLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (967)
Q Consensus 625 LLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~ 698 (967)
...|+++|+..+...+.|-..++.....=-.++.. -+.-+...+.|+..|..++...|.++..
T Consensus 107 A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e-----------K~qLLeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 107 AQQQLETLKAALKAAQANLANAEQVAEGAQQELAE-----------KTQLLEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578888888888887777766655332222222 2233566677788888888877765554
No 267
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.26 E-value=6.9e+02 Score=28.38 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=24.2
Q ss_pred HHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVT 487 (967)
Q Consensus 438 a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~ 487 (967)
..|.-.|.+|..++..-..+=++.=+...-||+|..+|+++++.|...+.
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444334444466666666666555544443
No 268
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.16 E-value=1.8e+02 Score=26.07 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISC 691 (967)
Q Consensus 650 L~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~ 691 (967)
|..||.++|.+++-....-..+++-+..-...|..|+.++..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888777665554444444444333334444433333
No 269
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.11 E-value=3.9e+02 Score=28.63 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHH
Q 002095 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKE 944 (967)
Q Consensus 865 Ela~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKe 944 (967)
++..++.....+...++.+..++..-..++..+.. .+..|+..+-+|+..-..+=.+...+.-++..|+.++..+++
T Consensus 97 kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~---~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 97 KLLSLKDDQEKLLEERKKLEKKIEEKEAELKELES---EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666555444444443 366677777777777666666777777778888777776654
No 270
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=36.09 E-value=1e+02 Score=34.40 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 652 LRLQEAEAKAAASEERE---RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (967)
Q Consensus 652 ~RL~elE~kl~~A~erE---r~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~ 705 (967)
.+|.+++.++.+..+.| ..+..++.....|+..+|.++..|--...+|.+.|+.
T Consensus 186 ~~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~ 242 (311)
T PF04642_consen 186 DQLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEP 242 (311)
T ss_pred cccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcC
Confidence 35777777777766433 3566788888999999999999998888888888864
No 271
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=35.95 E-value=5.8e+02 Score=30.40 Aligned_cols=57 Identities=16% Similarity=0.312 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 002095 593 LRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTAR----RAEAWAAVERSLNLRLQEAEAK 660 (967)
Q Consensus 593 LR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~as----qsenWe~iE~sL~~RL~elE~k 660 (967)
|...+..+..++..++.+..++.. ||..||.++.. +...|--.|.-..-|++.-+..
T Consensus 90 l~~~~~~~~~~l~~~e~~~~~l~~-----------q~~~Lq~~~~~ls~~~~~dWlLaEaeyLlrlA~qkL~ 150 (390)
T PRK10920 90 LEGILKQQAKALDQANRQQAALAK-----------QLDELQQKVATISGSDAKTWLLAQADFLVKLAGRKLW 150 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666544 88888888874 4589999999998888875543
No 272
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=35.83 E-value=1e+03 Score=30.32 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 002095 401 LREEYHQRVATLERKVYALTKERDTLRREQNKK-SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREL 478 (967)
Q Consensus 401 L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~-s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikEl 478 (967)
+...-.++|..|..+++.+.++-..|+...... ......+++=..+|..|-.....|=.+. ......|||+.+|-|+
T Consensus 235 ~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 235 LESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILEL 312 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 333333445556655555555555444433221 2233344444444555555555555544 4444555555554444
No 273
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.78 E-value=2.9e+02 Score=26.10 Aligned_cols=44 Identities=32% Similarity=0.454 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002095 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq 417 (967)
....+++.|...|+.|...+-.+.. .+++.|. ..-|..||..+.
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~G----edL~~Ls---~~eL~~LE~~Le 59 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMG----EDLESLS---LKELQQLEQQLE 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc----ccccccc---hHHHHHHHHhhh
Confidence 3344555555556655544443333 2333332 245556665554
No 274
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=35.75 E-value=8.5e+02 Score=29.29 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=7.0
Q ss_pred ccCCcCchHHHH
Q 002095 617 QVPESTRPLLRQ 628 (967)
Q Consensus 617 svseATrPLLRQ 628 (967)
+.++...|+.--
T Consensus 160 ~~~~~~~~~~~~ 171 (445)
T PRK13428 160 STADVDYPLLAK 171 (445)
T ss_pred CchhhcCchhhh
Confidence 555666776633
No 275
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.01 E-value=3.5e+02 Score=32.95 Aligned_cols=52 Identities=33% Similarity=0.537 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 002095 371 EIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVA-TLERKVYALTKERDTLRREQN 431 (967)
Q Consensus 371 ~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~-aLErKlq~L~KErD~LKke~~ 431 (967)
+++.|..+|..|+.++++|+.....-+ +||. +++..-+.+.+++++|+.+..
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id---------~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSID---------QQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH---------HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444677788888888888877542222 2332 233344556666666655543
No 276
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=34.92 E-value=2e+02 Score=34.48 Aligned_cols=111 Identities=26% Similarity=0.358 Sum_probs=82.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhh-HHHHHHH------------
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAI-------LPG-IQAELDA------------ 913 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~-------v~~-Le~elee------------ 913 (967)
.+...|.+.|.+++.+-.+|+.-...-+.+-++|..|..+.|.+.+...- +.. .+..+++
T Consensus 213 ~~~~~L~~~E~~L~~l~~~~~~~~~~~~~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~iV~~RL~eLrE~~i~g~~tl 292 (420)
T PF11902_consen 213 ELSPELSELEQRLAALTQRMASSEDTDDELLDELTRLAAEVEALAARTSYRFSASRAYYEIVEQRLAELREERIPGYQTL 292 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhcccccCCCCcH
Confidence 35677888999999999999999888889999999999999999877511 111 2333333
Q ss_pred ---HHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhcccCC
Q 002095 914 ---LRRRHSAALELMGERDEELEELRADIMDLKEMYREQVN-LLVNKIQVMGSSM 964 (967)
Q Consensus 914 ---LqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QId-eLlkQi~~L~~~~ 964 (967)
++.|+.=+..=+==-.++.+.|-.+|.-.-+|.|+.|| .+=.|.+.|=.||
T Consensus 293 ~eF~~RRl~PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM 347 (420)
T PF11902_consen 293 SEFLERRLTPAMRTCEAVERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASM 347 (420)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44556555555555577889999999999999999998 4555666666665
No 277
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.54 E-value=1.2e+03 Score=30.54 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 002095 628 QIEAIQETTA 637 (967)
Q Consensus 628 QIEtLQ~q~a 637 (967)
|+..|+.++.
T Consensus 482 el~~l~~~i~ 491 (908)
T COG0419 482 ELEELEEELS 491 (908)
T ss_pred HHHHHHHHHH
Confidence 5556666666
No 278
>PF15294 Leu_zip: Leucine zipper
Probab=34.44 E-value=7.5e+02 Score=28.28 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred ccCcccccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc----cc
Q 002095 318 DSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR----KT 393 (967)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~s~~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~----~~ 393 (967)
....+.....|.+...+..++=-+-|+.+|+.+-..|-..|..-+.+.-.-.++..+|..+...|+......+. ..
T Consensus 108 ~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~ 187 (278)
T PF15294_consen 108 KPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSF 187 (278)
T ss_pred CccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------------hHHHHHHhhHHH
Q 002095 394 NDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKK----------------------------SDAAALLKEKDE 445 (967)
Q Consensus 394 ~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~----------------------------s~~~a~LkEKDE 445 (967)
+..++..|-.-+..==+.+++.+.........|.-.+... ..+...|.-|.+
T Consensus 188 ~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~ 267 (278)
T PF15294_consen 188 KAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNE 267 (278)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccH
Q ss_pred HHHHHHH
Q 002095 446 IINQVMA 452 (967)
Q Consensus 446 ~IaqLmE 452 (967)
+|+.|+.
T Consensus 268 QiKeLRk 274 (278)
T PF15294_consen 268 QIKELRK 274 (278)
T ss_pred HHHHHHH
No 279
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=34.04 E-value=7.5e+02 Score=28.12 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 644 AAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 644 e~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE 704 (967)
..||+.|..-|..+..++.. ++..+..+...-..|+.++..-+.++.+.++.|+
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~-------~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQ-------TQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666665555443 3333444444445555555555555555444443
No 280
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.00 E-value=2.6e+02 Score=31.04 Aligned_cols=44 Identities=30% Similarity=0.448 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 002095 566 TMLVQALEELRQTLSRTEQQAVFREDMLR---RDIEDLQRRYQASER 609 (967)
Q Consensus 566 ~~L~qqIedLRe~L~Raeq~a~~rEeeLR---~EIs~Le~RLEeaEs 609 (967)
+.|+..++++++.|.+.+-...+.++.++ +++.+|..||.+++-
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 34566677777777776666666666665 466667666665443
No 281
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=33.64 E-value=8.9e+02 Score=28.85 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 002095 571 ALEELRQTL 579 (967)
Q Consensus 571 qIedLRe~L 579 (967)
++..|+..+
T Consensus 105 ~~~~~~~~~ 113 (457)
T TIGR01000 105 QLDNLKDQK 113 (457)
T ss_pred HHHHHHHHH
Confidence 333333333
No 282
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=33.63 E-value=1.2e+03 Score=30.36 Aligned_cols=130 Identities=28% Similarity=0.362 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (967)
Q Consensus 343 e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KE 422 (967)
=-||...++-.|-..|+.+..+--...+.++.|-.. |+.=+. .+...++|--|||-.+=.|. ++|
T Consensus 18 gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~a---Lkec~~---------qlr~~ree~eq~i~~~~~~~---s~e 82 (769)
T PF05911_consen 18 GWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGA---LKECMR---------QLRQVREEQEQKIHEAVAKK---SKE 82 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHH---HHHHHH---------HHHHhhHHHHHHHHHHHHHH---hHH
Confidence 356777777778777777633322333444433221 221111 12334555555554332221 223
Q ss_pred HHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002095 423 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEE 493 (967)
Q Consensus 423 rD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~KlE~e~ 493 (967)
.+.. ...+...|.|-..++..+-.|--.|++.-+..++.|-+|+......+.++..|..+++..+
T Consensus 83 ~e~~------~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~e 147 (769)
T PF05911_consen 83 WEKI------KSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTE 147 (769)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3311 2356677777788888888888888888888888888888887777777877777666433
No 283
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.44 E-value=1.2e+03 Score=30.26 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=17.5
Q ss_pred cccccCCCCCchhhhhhhhHH
Q 002095 5 SGKVSLGNFPDLAGAVNKFSE 25 (967)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (967)
.|...||+|||+...+.+++.
T Consensus 60 ~~~~~l~~~~Di~~~l~r~~~ 80 (782)
T PRK00409 60 KGLPPFEGVKDIDDALKRAEK 80 (782)
T ss_pred cCCCCCCCCccHHHHHHHHhC
Confidence 466789999999999888863
No 284
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=33.35 E-value=8.9e+02 Score=28.80 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCC--cCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 593 LRRDIEDLQRRYQASERRCEELVTQ--VPE--STRPL-LRQIEAIQETTARRAEAWAAVERSLNLRLQEAE 658 (967)
Q Consensus 593 LR~EIs~Le~RLEeaEsRaEELSss--vse--ATrPL-LRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE 658 (967)
+-..+.+|..+++.+|...+..... ..+ ....+ .++.-.+.+++...+..=...++.|........
T Consensus 200 l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~ 270 (458)
T COG3206 200 LDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLP 270 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555555555555433 222 23333 456666677776666666666666655554433
No 285
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.93 E-value=8.8e+02 Score=28.59 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 371 EIAKMMNENEHLKAVIEDLKR-----KTNDAELETLREEYHQRVATLERKVYALTKER 423 (967)
Q Consensus 371 ~~a~L~e~n~~L~~~~e~l~~-----~~~~~~~~~L~eEy~qRI~aLErKlq~L~KEr 423 (967)
+-..|.-+|++|+.++..++. +..-.-++.+---..++=.-+|-+|+.+.+|+
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456778888888888876554 12222233333333333344555555554444
No 286
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.78 E-value=4e+02 Score=30.24 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhhHHH
Q 002095 512 ETIEKHQVELGEQKDYY 528 (967)
Q Consensus 512 e~iek~q~eL~a~k~~~ 528 (967)
+..+++..+|..+-..|
T Consensus 225 dEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 225 DEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666665544444
No 287
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.73 E-value=1.3e+03 Score=30.38 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002095 371 EIAKMMNENEHLKAVIE 387 (967)
Q Consensus 371 ~~a~L~e~n~~L~~~~e 387 (967)
+++.|.++++.|+.++.
T Consensus 700 ~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 700 EHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44445555555555544
No 288
>PRK12704 phosphodiesterase; Provisional
Probab=32.72 E-value=1e+03 Score=29.32 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 002095 881 DSLAEELVKMTAQ 893 (967)
Q Consensus 881 d~L~eELVrLt~E 893 (967)
..+..+|+.|...
T Consensus 313 ~~~~~~i~~ll~~ 325 (520)
T PRK12704 313 HGLHPELIKLLGR 325 (520)
T ss_pred chhHHHHHHHHHH
Confidence 3445555555444
No 289
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.52 E-value=1e+02 Score=29.86 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 365 AQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 365 ~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
+.....++++|..+|+.|+.++..|+.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334455666777888888888877765
No 290
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.25 E-value=1.2e+02 Score=27.33 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 362 ARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 362 ~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
.++++....++..++.+|++|+.++..|..
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345556666777888888888888877664
No 291
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.17 E-value=6.7e+02 Score=26.99 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 002095 593 LRRDIEDL 600 (967)
Q Consensus 593 LR~EIs~L 600 (967)
|+.++.+|
T Consensus 164 Lk~ei~~l 171 (205)
T PRK06231 164 LQKESVEL 171 (205)
T ss_pred HHHHHHHH
Confidence 44444443
No 292
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=31.58 E-value=1.2e+03 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=15.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 721 KEEADTQEGRANQLEEEIKELRRKHK 746 (967)
Q Consensus 721 kee~~~le~r~~~LEeeL~eLr~k~~ 746 (967)
+.++..++..++..-..|++++.+++
T Consensus 316 ~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666655543
No 293
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=31.56 E-value=8.2e+02 Score=27.81 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 002095 731 ANQLEEEIKELRRK 744 (967)
Q Consensus 731 ~~~LEeeL~eLr~k 744 (967)
+..|.++...||.+
T Consensus 166 vqRLkdEardlrqe 179 (333)
T KOG1853|consen 166 VQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 294
>PRK04325 hypothetical protein; Provisional
Probab=31.13 E-value=3.7e+02 Score=24.62 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQA 606 (967)
Q Consensus 554 Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEe 606 (967)
++.++.+++.+..-....|++|...+-+.. ...+.|+..+..|-.|+.+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq----~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQ----QTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 445566666665555567888887775432 1223444555555555544
No 295
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.07 E-value=4.3e+02 Score=26.94 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=43.4
Q ss_pred ccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 002095 328 LSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQ 407 (967)
Q Consensus 328 ~~~~~~~~~s~~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~q 407 (967)
|..+.+...+.++..-.+.|.+..+.++..|.....++..+..++.++...++.- ..
T Consensus 6 l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d-----------------------~~ 62 (160)
T PF13094_consen 6 LARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERD-----------------------YE 62 (160)
T ss_pred CCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HH
Confidence 3333333333466777888988888888888765444444333333333332222 24
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 408 RVATLERKVYALTKERDTL 426 (967)
Q Consensus 408 RI~aLErKlq~L~KErD~L 426 (967)
.|..|+++.+.+.+++...
T Consensus 63 ~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 63 YLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666776666666644
No 296
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.41 E-value=2.4e+02 Score=33.52 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHH-HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEI-INQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKG 484 (967)
Q Consensus 406 ~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~-IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~ 484 (967)
+.+|-.+..+...+..+.+.|+.+.+..+..-..++.+.+- ...|++ .+|.|+.++++++.++..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~--------------~~~~l~~~~~~~~~~~~~ 94 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKK--------------ELKELKEELTELSAALKA 94 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 45666666666666777777766655433321111111011 223333 345556666666666655
Q ss_pred HHhHHH
Q 002095 485 LVTKLQ 490 (967)
Q Consensus 485 Lk~KlE 490 (967)
+..++.
T Consensus 95 ~~~~~~ 100 (418)
T TIGR00414 95 LEAELQ 100 (418)
T ss_pred HHHHHH
Confidence 554443
No 297
>PLN02678 seryl-tRNA synthetase
Probab=30.28 E-value=1.4e+02 Score=35.86 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=24.4
Q ss_pred HHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (967)
Q Consensus 858 ~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~ 892 (967)
.|-.++.+...++.++..|.++|+.++.+|-.++.
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~ 68 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKI 68 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34446667777777788888888888877766543
No 298
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.14 E-value=7.4e+02 Score=26.84 Aligned_cols=86 Identities=12% Similarity=0.158 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHhHHHHHHHHHH
Q 002095 876 MESIRDSLAEELVKM-TAQCEKLR-AEAAILPGIQAELDALRRRHSAALELMG-----ERDEELEELRADIMDLKEMYRE 948 (967)
Q Consensus 876 Les~Rd~L~eELVrL-t~EnEel~-~e~~~v~~Le~eleeLqqRYeTlLELLG-----EKsEeVEELraDV~DVKeMYR~ 948 (967)
+...|+.|...+-.+ +..+..+. ..+..+.++++.++--...|+++|.=+. -|.+.|+|...+|.=.+..|+.
T Consensus 75 i~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~ 154 (202)
T cd07606 75 IGSYKEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFET 154 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHH
Confidence 344444444444332 33333333 2334677888999999999999887776 3789999999999999999998
Q ss_pred HHHHHHHHHHhcc
Q 002095 949 QVNLLVNKIQVMG 961 (967)
Q Consensus 949 QIdeLlkQi~~L~ 961 (967)
.-=++|-+|+.+.
T Consensus 155 ~~ldyv~~ln~~q 167 (202)
T cd07606 155 ARFDLMNRLHAAD 167 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 8877887776653
No 299
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=29.96 E-value=5.9e+02 Score=26.11 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002095 406 HQRVATLERKVYALTKERDTLRR 428 (967)
Q Consensus 406 ~qRI~aLErKlq~L~KErD~LKk 428 (967)
..-+..-|+++..|..|.+.||+
T Consensus 74 ~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 74 RALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHH
Confidence 34455556677777777777766
No 300
>PRK00295 hypothetical protein; Provisional
Probab=29.90 E-value=4.1e+02 Score=23.92 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 555 ESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQA 606 (967)
Q Consensus 555 e~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEe 606 (967)
+.++.+++.+..-+...|++|...+-+.. ...+.|+..+..|..|+.+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq----~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQ----RVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34556666655545566777777775432 2224455555555555554
No 301
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.72 E-value=2.1e+02 Score=30.23 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=42.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002095 855 FESILRQKEGELASYMSRLASMESIRDSLAEELVKM--TAQCEKLRAEAAILPGIQAELDALRRRHS 919 (967)
Q Consensus 855 LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrL--t~EnEel~~e~~~v~~Le~eleeLqqRYe 919 (967)
+..-+..++..+..+..+|+.|+...+.+++.||.. ..-.-++.+-.+++..|+..+..+...|.
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~ 149 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYI 149 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334455566777778889999999999999999875 33333333333456666666666655543
No 302
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.68 E-value=2.2e+02 Score=28.16 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLK 390 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~ 390 (967)
+..|-..|..|-..+.+-..+++.+..+++.|.-+|+.|+..+..+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455566666666666667777889999999999999999999873
No 303
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=29.67 E-value=98 Score=35.81 Aligned_cols=110 Identities=15% Similarity=0.254 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 594 RRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNE 673 (967)
Q Consensus 594 R~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~e 673 (967)
++++..+..||-++|.....|..+++. +..+|.+++..+......-..++.
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~-----------------------------lss~iSdLss~L~~l~~sl~~~~s 77 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSS-----------------------------LSSTISDLSSDLQDLASSLADMTS 77 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888888776553 233344444444443333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 674 RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHK 746 (967)
Q Consensus 674 kl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~~ 746 (967)
.+..+...+..+...+..+-.....|...+-... ..+..++..+..+..++.+|+....
T Consensus 78 ~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~--------------ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 78 ELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHS--------------SSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhh--------------hhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4555555555555555555555555555444322 3344556666777777777766653
No 304
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=29.53 E-value=5.9e+02 Score=25.52 Aligned_cols=98 Identities=23% Similarity=0.331 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHhhHH
Q 002095 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQ----NKKSDAAALLKEKD 444 (967)
Q Consensus 369 ~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~----~k~s~~~a~LkEKD 444 (967)
.++-..|.+.|...-..+.+++.-. ..+-.+-+.+..+|..- |+. ++--|..|+... .....+..+|+||-
T Consensus 19 ~~~t~~Lk~ec~~F~~ki~~F~~iv--~~~~~~~~~~A~~VE~e--Klk-AIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~ 93 (120)
T PF14931_consen 19 ADQTQELKEECKEFVEKISEFQKIV--KGFIEILDELAKRVENE--KLK-AIGARNLLKSEAKQREAQQQQLQALIAEKK 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHH-HHHhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344456666666655555555433 33333344444444331 121 112222233222 12335567999999
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 002095 445 EIINQVMAEGEELSKKQAAQEAQIRKL 471 (967)
Q Consensus 445 E~IaqLmEEGEKLSKkELq~sniIKKL 471 (967)
-...-|..|=+.|-+-+..+...|-+|
T Consensus 94 ~eLERl~~E~~sL~kve~eQ~~~i~~~ 120 (120)
T PF14931_consen 94 MELERLRSEYESLQKVEQEQNELIQKL 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998888654
No 305
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.52 E-value=7.4e+02 Score=26.66 Aligned_cols=105 Identities=22% Similarity=0.226 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHHH
Q 002095 648 RSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKE----------RQRAAENRQEY 717 (967)
Q Consensus 648 ~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~E----------r~r~~~~r~e~ 717 (967)
.+-..-|..+..+.+....++......+.++......|-+-|..++.+...|+.+|..+ +.++.....++
T Consensus 23 ~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l 102 (201)
T PF13851_consen 23 LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKEL 102 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555554455555555555665566666666666666666666655432 22222222233
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 718 LAAKEEADTQEGRANQLEEEIKELRRKHKQELQEA 752 (967)
Q Consensus 718 ~aakee~~~le~r~~~LEeeL~eLr~k~~~elqea 752 (967)
...+-+...++.++..++.+..+|..+|...+++.
T Consensus 103 ~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 103 KDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666677777777766666655444
No 306
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=29.44 E-value=9.8e+02 Score=29.02 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=34.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 446 IINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVT 487 (967)
Q Consensus 446 ~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~ 487 (967)
.+..|..|=++|+..+.++-.++|+|-..-.++...+..++.
T Consensus 177 ~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 177 SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888999999999999999988777776666665554
No 307
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.42 E-value=1.5e+02 Score=35.19 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=24.7
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~ 892 (967)
|-.++.+...++.++..|.++|+.++.+|-.++.
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~ 63 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKR 63 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667777788888888888888888876543
No 308
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.40 E-value=1.1e+03 Score=28.77 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHH
Q 002095 558 LREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTA 637 (967)
Q Consensus 558 lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~a 637 (967)
+.++.+..+.. -.+...+....-+=....-+.-.++..+++|+ ++..+-.|.=++-.-.+..-++|+-+|..++.+.-
T Consensus 233 ~eel~eq~een-eel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~ 310 (521)
T KOG1937|consen 233 VEELTEQNEEN-EELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQME 310 (521)
T ss_pred HHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 002095 638 RRAEAWAAVERSLNLRLQEAEAKAAASE------ERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE--KERQR 709 (967)
Q Consensus 638 sqsenWe~iE~sL~~RL~elE~kl~~A~------erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE--~Er~r 709 (967)
.-+.-|+..=..|.++.--+...+.... .+-+.+...+..+..++..-+.....++.++..+-..+. .+.+|
T Consensus 311 ~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqr 390 (521)
T KOG1937|consen 311 ELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQR 390 (521)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002095 710 AAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQ 750 (967)
Q Consensus 710 ~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~~~elq 750 (967)
..+.---.-..+.++-...+..++|+.+++..-..+.+.+.
T Consensus 391 ikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfa 431 (521)
T KOG1937|consen 391 IKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFA 431 (521)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
No 309
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.01 E-value=4.1e+02 Score=34.19 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=13.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002095 930 EELEELRADIMDLKEMYREQVNLLVNKIQ 958 (967)
Q Consensus 930 EeVEELraDV~DVKeMYR~QIdeLlkQi~ 958 (967)
+..++++....++-...|.+++.+++.+.
T Consensus 561 ~~~~~a~~ea~~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 561 NKKLELEKEAQEALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445544444443
No 310
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=28.75 E-value=6.7e+02 Score=27.05 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=45.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHH
Q 002095 869 YMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMD 941 (967)
Q Consensus 869 Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~D 941 (967)
+-..|-+|+..-+..-+.+- .+.|...+.-..+.+|+..+..|+++.+-+|+||--.----.||+.-|+-
T Consensus 84 lE~kvD~lee~fdd~~d~l~---~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~ 153 (189)
T TIGR02132 84 LEEKVDLIEEFFDDKFDELE---AQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQK 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHH
Confidence 33444555444443333332 33444444456788999999999999999999997666666677666653
No 311
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.63 E-value=2.8e+02 Score=24.85 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 555 ESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQA 606 (967)
Q Consensus 555 e~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEe 606 (967)
+.++.+++.+..-+...|++|...+.+. ....+.|+..+..|..|+.+
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Q----q~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQ----QRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544455666666666432 23334455555555555544
No 312
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=28.50 E-value=1.5e+03 Score=29.86 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 584 QQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAA 663 (967)
Q Consensus 584 q~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~ 663 (967)
+=.++..+++-.+..+|+.||+-.+-+.+=+--..-----||++-. ++.+.....+.|+..|.. |+..+....+.
T Consensus 666 ~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~--~~~~~~~d~e~~e~~Ek~---Ri~~~~ae~e~ 740 (988)
T KOG2072|consen 666 QIKARQIEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKA--YDERQEEDRELYEAREKQ---RIEAAIAERES 740 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHH--HHHHHhhhHHHHHHHHHH---HHHHHHHHHHH
Confidence 3344556778888899999999766644433322222234887754 667778889999998875 56666665544
Q ss_pred HHH
Q 002095 664 SEE 666 (967)
Q Consensus 664 A~e 666 (967)
+..
T Consensus 741 ~vk 743 (988)
T KOG2072|consen 741 AVK 743 (988)
T ss_pred HHH
Confidence 443
No 313
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=28.39 E-value=1.2e+02 Score=33.31 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=35.5
Q ss_pred HHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 856 ESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQC 894 (967)
Q Consensus 856 qA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~En 894 (967)
+..||+++-++.+|..-|...-++||+|++.+-+|+-+.
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999999999999998544
No 314
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=28.29 E-value=23 Score=22.94 Aligned_cols=12 Identities=58% Similarity=1.013 Sum_probs=6.5
Q ss_pred cchhhhhcccCC
Q 002095 59 LWPVMSFMGHKS 70 (967)
Q Consensus 59 ~~~~~~~~~~~~ 70 (967)
.|.|=.|||.||
T Consensus 3 ~WAvGh~Mgkks 14 (14)
T PF02044_consen 3 QWAVGHFMGKKS 14 (14)
T ss_dssp TCHHHCT-----
T ss_pred ccceeeeeccCC
Confidence 699999999886
No 315
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.21 E-value=8.1e+02 Score=26.68 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 002095 371 EIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 371 ~~a~L~e~n~~L~~~~e~l~~ 391 (967)
.|+.|+..|..|.+++..|+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~ 29 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQR 29 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 566667777777777766665
No 316
>PRK00736 hypothetical protein; Provisional
Probab=28.19 E-value=4.5e+02 Score=23.70 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 555 ESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQA 606 (967)
Q Consensus 555 e~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEe 606 (967)
+.++.+++.+..-+...|++|...+-+.. ...+.|...+..|..|+.+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq----~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQW----KTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34455666555445556777777774432 2234455555555555554
No 317
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.44 E-value=5.3e+02 Score=24.33 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=47.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM 925 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELL 925 (967)
.|.+-|.+---.|+-||-+|..|...-..|..|+-.+....+.|..+ ...|+.+...-+.|..++|--+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e---n~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE---NNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555567777777777777777777766666666666544 5667788888888888887544
No 318
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.42 E-value=4.9e+02 Score=27.60 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 560 EAGERETMLVQALEELRQTLSRTEQQ-AVFREDMLRRDIEDLQRRYQASERRCEELVTQ 617 (967)
Q Consensus 560 Eaeere~~L~qqIedLRe~L~Raeq~-a~~rEeeLR~EIs~Le~RLEeaEsRaEELSss 617 (967)
-+..+...+..+|.+|...+..-... ..-+=...|.||.+|..+++.+|.|...+...
T Consensus 89 lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 89 QLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445555666666666543222 22344556789999999999999988887654
No 319
>PRK14127 cell division protein GpsB; Provisional
Probab=27.39 E-value=3e+02 Score=27.23 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHH----------HHHHHHH--HHHHHHHHHHHHH
Q 002095 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAE----------LETLREE--YHQRVATLERKVY 417 (967)
Q Consensus 369 ~~~~a~L~e~n~~L~~~~e~l~~~~~~~~----------~~~L~eE--y~qRI~aLErKlq 417 (967)
.++++.|.++|..|+..+..+........ ..+ ..- -..||+.||+.+.
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~-~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSS-ATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCC-cchHHHHHHHHHHHHHHh
Confidence 44555666666666666655554311000 000 011 2489999999885
No 320
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=27.30 E-value=1.2e+03 Score=28.55 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhHHHHH
Q 002095 461 QAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATE 507 (967)
Q Consensus 461 ELq~sniIKKLRakikElEee~k~Lk~KlE~e~~klesikr~~~a~E 507 (967)
.-++.+.|--|.-...=+|+.++.|+.|.-...--++-|.+.+..++
T Consensus 326 n~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niE 372 (527)
T PF15066_consen 326 NRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIE 372 (527)
T ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33334444444444444444455554443333223344444333333
No 321
>PRK00295 hypothetical protein; Provisional
Probab=27.21 E-value=3.7e+02 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 650 LNLRLQEAEAKAAASEERERSVNE 673 (967)
Q Consensus 650 L~~RL~elE~kl~~A~erEr~~~e 673 (967)
+..||.++|.+++-...--..+++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~ 26 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALND 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888777654444333333
No 322
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=27.20 E-value=33 Score=35.99 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=16.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 866 LASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA 901 (967)
Q Consensus 866 la~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~ 901 (967)
+..++..|..|...|..+..+|.+|..+|+.|+.+.
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el 45 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGEL 45 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999988775
No 323
>PLN02320 seryl-tRNA synthetase
Probab=26.82 E-value=2.6e+02 Score=34.27 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 002095 468 IRKLRAQIRELEEEKKGLVTKLQ 490 (967)
Q Consensus 468 IKKLRakikElEee~k~Lk~KlE 490 (967)
+|.|+.+++.+|.++..+..++.
T Consensus 139 ~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 139 GKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666655555554444
No 324
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=26.63 E-value=2.4e+02 Score=26.21 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccc----hhHHH-------HHHHhHHHHHHHHHHHHHH
Q 002095 905 PGIQAELDALRRRHSAALELMGER----DEELE-------ELRADIMDLKEMYREQVNL 952 (967)
Q Consensus 905 ~~Le~eleeLqqRYeTlLELLGEK----sEeVE-------ELraDV~DVKeMYR~QIde 952 (967)
+-|+.-+.+|+.|-.++|-|++|- .+++| +|=.=|+|+-.+||.+.++
T Consensus 14 kWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAer 72 (74)
T PF07765_consen 14 KWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAER 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 447888999999999999999873 44566 8888899999999988764
No 325
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.47 E-value=1.7e+03 Score=29.90 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHH
Q 002095 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIIN 448 (967)
Q Consensus 369 ~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~Ia 448 (967)
.-.+++....+......+-.+++.. ....+..-.|.+|..++|..+..+-+... +.. ...+++|..-++++.
T Consensus 656 ee~~~k~~k~le~~~~~~~~~~~er--~~~~~~~~~~~~r~~~ie~~~~~l~~qke----e~~--~~~~~~I~~~~~~~~ 727 (1072)
T KOG0979|consen 656 EEKKQKERKELEEEQKKLKLLKRER--TKLNSELKSYQQRKERIENLVVDLDRQEE----EYA--ASEAKKILDTEDMRI 727 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHhHHHHHH
Confidence 3455566666666666666666554 34555567888888888877655544443 221 234445555555555
Q ss_pred H
Q 002095 449 Q 449 (967)
Q Consensus 449 q 449 (967)
+
T Consensus 728 ~ 728 (1072)
T KOG0979|consen 728 Q 728 (1072)
T ss_pred H
Confidence 4
No 326
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=26.43 E-value=6.7e+02 Score=27.22 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHH
Q 002095 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAE 641 (967)
Q Consensus 567 ~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqse 641 (967)
.|...+..+|..++.....-...-.....++..|+.+|.++-.++=++-. +...|=.+|..|+.....+..
T Consensus 147 ~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~----a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 147 RLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEV----ACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666554444444555777888888888888888777743 344566778777776665543
No 327
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.19 E-value=9e+02 Score=26.58 Aligned_cols=65 Identities=32% Similarity=0.411 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHH
Q 002095 341 VCELEKLKREMKMMETALQGAA-RQAQAKADEIAKMMNENEHLKAVIEDLKRKT--NDAELETLREEY 405 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~~-r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~--~~~~~~~L~eEy 405 (967)
-..+++|++.|..++..|..+. +--+.|..-.........-=+..++-|.+|+ +..|++..++=|
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Ly 98 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELY 98 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHH
Confidence 4689999999999999999873 2223333333333344433444556667765 456765554443
No 328
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.05 E-value=1.7e+03 Score=29.84 Aligned_cols=50 Identities=24% Similarity=0.170 Sum_probs=32.7
Q ss_pred HHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 437 AALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 437 ~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk 486 (967)
..+..=+++.|..|..|=.-++-+.-.+++.+.|.|..+.+....+..++
T Consensus 628 ~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~ 677 (1072)
T KOG0979|consen 628 EELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLK 677 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567777777777777777777777777777765555544444443
No 329
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.95 E-value=3.7e+02 Score=24.37 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=28.9
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e 900 (967)
|..++.-+..|-..+.+|..+=..|+.+++.+..+...+.++
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777777777776666654
No 330
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=25.93 E-value=1.2e+03 Score=28.08 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHHHH
Q 002095 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR-------KTNDAELETLREEYHQRVATLE 413 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~-------~~~~~~~~~L~eEy~qRI~aLE 413 (967)
..|++.|+++|.-|-+.+..-.. .+......++.++..++. .++-+-++.-+..|..+-+.|-
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~----------~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll 219 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQS----------EVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLL 219 (424)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 77899999998887766654222 222223333333333333 1334456666777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 002095 414 RKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (967)
Q Consensus 414 rKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRak 474 (967)
.||-.|-.=.+.||+.+. ....+=.--++..++.+-..+.+.--++...|+.++-.
T Consensus 220 ~kVdDLQD~VE~LRkDV~-----~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~ 275 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDVV-----QRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPI 275 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 777777777777777653 22222333456666666666666655555555555543
No 331
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.88 E-value=1.1e+03 Score=27.45 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 682 INVLEAQISCLRAEQTQLTKSLEKERQRA 710 (967)
Q Consensus 682 i~~LE~els~lr~E~~~L~~qLE~Er~r~ 710 (967)
+.....+...++.++.+|+..|..+..|.
T Consensus 256 ~~~~~~eek~ireEN~rLqr~L~~E~err 284 (310)
T PF09755_consen 256 MAQYLQEEKEIREENRRLQRKLQREVERR 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455677888888888887666543
No 332
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.80 E-value=1.1e+03 Score=30.15 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=70.5
Q ss_pred hhhhhhHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 002095 860 RQKEGELASYMSRLASMESIRD--------------SLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM 925 (967)
Q Consensus 860 RrrEGEla~Lq~ELarLes~Rd--------------~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELL 925 (967)
.++.-+++..+.+|+.|++... -|.+.+.+|....+.++.. ...=.+++.+|...-+-+++-+
T Consensus 64 ~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~q---k~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 64 ARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQ---KDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566666667776666543 3667777887777777744 4455677888888888999999
Q ss_pred ccc---------------hhHHHHHHHhHHHHHHHHHHHHH---HHHHHHHhc
Q 002095 926 GER---------------DEELEELRADIMDLKEMYREQVN---LLVNKIQVM 960 (967)
Q Consensus 926 GEK---------------sEeVEELraDV~DVKeMYR~QId---eLlkQi~~L 960 (967)
|+. -+.+++|+..|..|.+-|..=++ .++..|-.|
T Consensus 141 ~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l 193 (660)
T KOG4302|consen 141 GGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSL 193 (660)
T ss_pred cCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 49999999999999988876554 444444433
No 333
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.67 E-value=6.7e+02 Score=24.90 Aligned_cols=44 Identities=32% Similarity=0.372 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 443 KDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (967)
Q Consensus 443 KDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk 486 (967)
.++-|.-|-.--+.|.+.--.+...|.+++.++......+..+.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444555555555554444444443
No 334
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.57 E-value=4.6e+02 Score=23.86 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 649 SLNLRLQEAEAKAAASEERERSVNE 673 (967)
Q Consensus 649 sL~~RL~elE~kl~~A~erEr~~~e 673 (967)
.+..||.+||.+++-...--..+++
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~ 29 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNV 29 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888777654444333333
No 335
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.49 E-value=7.1e+02 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 624 PLLRQIEAIQETTARRAEAWAAVERSLN 651 (967)
Q Consensus 624 PLLRQIEtLQ~q~asqsenWe~iE~sL~ 651 (967)
-++.|+..||.++..-.-.-+.+|..|.
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~ 37 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLK 37 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887776666666666663
No 336
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=25.38 E-value=7.9e+02 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 573 EELRQTLSRTEQQAVFREDMLRRDIEDL 600 (967)
Q Consensus 573 edLRe~L~Raeq~a~~rEeeLR~EIs~L 600 (967)
..-+..++++.+++.. +||.++.+|
T Consensus 103 ~~A~~~Ie~Ek~~Al~---elr~eva~L 127 (154)
T PRK06568 103 SDAIQLIQNQKSTASK---ELQDEFCDE 127 (154)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3344444444333333 466666665
No 337
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.21 E-value=1.6e+03 Score=29.11 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.5
Q ss_pred cccCCCCCchhhhhhhhH
Q 002095 7 KVSLGNFPDLAGAVNKFS 24 (967)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (967)
...||+|+|+...+.++.
T Consensus 59 ~~~l~~~~di~~~l~r~~ 76 (771)
T TIGR01069 59 NVRFFGFEDIRELLKRAE 76 (771)
T ss_pred cCCcCCCccHHHHHHHHh
Confidence 357899999998888776
No 338
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=25.02 E-value=9.7e+02 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002095 863 EGELASYMSRLASMESIRDSLAEELVKM 890 (967)
Q Consensus 863 EGEla~Lq~ELarLes~Rd~L~eELVrL 890 (967)
+-+...+-..-.+|+.+=..|..||-.|
T Consensus 174 EeeR~t~~EKnk~lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 174 EEERVTYAEKNKRLQEQLKELKSELEQL 201 (246)
T ss_dssp GGC---HHHH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3334444444444554444444455443
No 339
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.97 E-value=1.2e+02 Score=28.94 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=18.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 002095 364 QAQAKADEIAKMMNENEHLKAVIEDLK 390 (967)
Q Consensus 364 ~~~~k~~~~a~L~e~n~~L~~~~e~l~ 390 (967)
++....+++++|..+|++|+.+..-..
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~ 50 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAE 50 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678888888888877665433
No 340
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.95 E-value=1.2e+02 Score=26.04 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 002095 905 PGIQAELDALRRRHSA 920 (967)
Q Consensus 905 ~~Le~eleeLqqRYeT 920 (967)
+.++.++++|.+||++
T Consensus 22 ~~ME~Eieelr~RY~~ 37 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQA 37 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5689999999999987
No 341
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=24.92 E-value=1.1e+03 Score=27.46 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002095 639 RAEAWAAVERSLNLRLQEAEAK 660 (967)
Q Consensus 639 qsenWe~iE~sL~~RL~elE~k 660 (967)
....|.-.|...+-||++-...
T Consensus 123 ~~~dW~LaEaeyLlrlA~qrL~ 144 (372)
T PF04375_consen 123 SRDDWLLAEAEYLLRLANQRLQ 144 (372)
T ss_pred ChHhHHHHHHHHHHHHHHHHHH
Confidence 7788998888888888774443
No 342
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.88 E-value=7e+02 Score=30.27 Aligned_cols=19 Identities=5% Similarity=0.059 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 642 AWAAVERSLNLRLQEAEAK 660 (967)
Q Consensus 642 nWe~iE~sL~~RL~elE~k 660 (967)
.|..+-..+..++..+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444433
No 343
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=24.86 E-value=9.7e+02 Score=26.50 Aligned_cols=85 Identities=22% Similarity=0.288 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 002095 399 ETLREEYHQRVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (967)
Q Consensus 399 ~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~----s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRak 474 (967)
.++++-...-++.||--+..|+.-...-+++.--+ .++-++|--||+-|..||+ |.-.+.+-+..|.-|+++
T Consensus 7 ~StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llk----la~eq~k~e~~m~~Lea~ 82 (272)
T KOG4552|consen 7 RSTRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLK----LAPEQQKREQLMRTLEAH 82 (272)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHH----HhHhHHHHHHHHHHHHHH
Confidence 35567777777888876666654432222222111 2456788999999999995 677777777888888888
Q ss_pred HHHHHHHHHHHHh
Q 002095 475 IRELEEEKKGLVT 487 (967)
Q Consensus 475 ikElEee~k~Lk~ 487 (967)
+.--...+..|++
T Consensus 83 VEkrD~~IQqLqk 95 (272)
T KOG4552|consen 83 VEKRDEVIQQLQK 95 (272)
T ss_pred HHHhHHHHHHHHH
Confidence 7666666655553
No 344
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.86 E-value=4.1e+02 Score=24.67 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=34.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASME------------SIRDSLAEELVKMTAQCEKLRAE 900 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLe------------s~Rd~L~eELVrLt~EnEel~~e 900 (967)
.|...|+.++-|+.+++-+...|. +.|..|..+|-.|....|..-..
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQ 72 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQ 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999988888883 45667777777777655554433
No 345
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=24.77 E-value=1.4e+03 Score=28.20 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHhh
Q 002095 376 MNENEHLKAVIEDLKRK-----TNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSD--------AAALLKE 442 (967)
Q Consensus 376 ~e~n~~L~~~~e~l~~~-----~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~--------~~a~LkE 442 (967)
-+....|+.-|++|... -...|++..-.-..+=++..++-||....|.++|--+..+... ....|-+
T Consensus 361 vDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq 440 (527)
T PF15066_consen 361 VDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ 440 (527)
T ss_pred HHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445566666666553 1234555555556667788888889888888888777765432 2358889
Q ss_pred HHHHHHHHHHHhHHhhHHHHH
Q 002095 443 KDEIINQVMAEGEELSKKQAA 463 (967)
Q Consensus 443 KDE~IaqLmEEGEKLSKkELq 463 (967)
||.-|.+-++=...||+|+..
T Consensus 441 KnksvsqclEmdk~LskKeee 461 (527)
T PF15066_consen 441 KNKSVSQCLEMDKTLSKKEEE 461 (527)
T ss_pred hhhHHHHHHHHHHHhhhhHHH
Confidence 999999999999999998764
No 346
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.67 E-value=4.2e+02 Score=31.56 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=42.5
Q ss_pred HHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHh
Q 002095 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQC----EKLRAEA----AILPGIQAELDALRRRHSAALELM 925 (967)
Q Consensus 858 ~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~En----Eel~~e~----~~v~~Le~eleeLqqRYeTlLELL 925 (967)
.|-.++.+...++.++..|.++|+.++.+|-.++... +.+.+++ +++..|+.++.+++..+..+|.-+
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445667777788888889999999888887755332 2333222 334455556666666665555443
No 347
>PRK00736 hypothetical protein; Provisional
Probab=24.64 E-value=4e+02 Score=23.99 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 649 SLNLRLQEAEAKAAASEER 667 (967)
Q Consensus 649 sL~~RL~elE~kl~~A~er 667 (967)
++..||.+||.+++-...-
T Consensus 2 ~~e~Ri~~LE~klafqe~t 20 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKT 20 (68)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4567788888777654433
No 348
>PRK02119 hypothetical protein; Provisional
Probab=24.56 E-value=4.7e+02 Score=23.91 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 649 SLNLRLQEAEAKAAASEER 667 (967)
Q Consensus 649 sL~~RL~elE~kl~~A~er 667 (967)
.+..||.+||.+++-...-
T Consensus 6 ~~e~Ri~~LE~rla~QE~t 24 (73)
T PRK02119 6 NLENRIAELEMKIAFQENL 24 (73)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3667888888777654443
No 349
>PRK14143 heat shock protein GrpE; Provisional
Probab=24.19 E-value=1e+03 Score=26.54 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=40.5
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 002095 335 SVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLER 414 (967)
Q Consensus 335 ~~s~~~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLEr 414 (967)
.++++...++..|..++..++..+. .+.+...++...++|++....+=+.......+..+-..|.-=||.|++
T Consensus 60 ~~~~~~~~~~~~l~~el~~l~~e~~-------elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLer 132 (238)
T PRK14143 60 ETAADNAARLAQLEQELESLKQELE-------ELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFER 132 (238)
T ss_pred CccccchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3445666677777666655444443 223344455555566555554433333334455555566666666666
Q ss_pred HHHH
Q 002095 415 KVYA 418 (967)
Q Consensus 415 Klq~ 418 (967)
-+..
T Consensus 133 Al~~ 136 (238)
T PRK14143 133 ARQQ 136 (238)
T ss_pred HHhc
Confidence 5553
No 350
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.16 E-value=4.6e+02 Score=23.49 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 405 YHQRVATLERKVYALTKERDTLRR 428 (967)
Q Consensus 405 y~qRI~aLErKlq~L~KErD~LKk 428 (967)
+-.|..+|+.++..|.++.+.+|.
T Consensus 37 aE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 37 AEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335666666666666666665553
No 351
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.08 E-value=6.6e+02 Score=24.24 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 627 RQIEAIQETTARRAEAWAAVERSLNLRLQEAE 658 (967)
Q Consensus 627 RQIEtLQ~q~asqsenWe~iE~sL~~RL~elE 658 (967)
|.|..+|..+..........+..+..+-..+.
T Consensus 7 re~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~ 38 (126)
T PF13863_consen 7 REMFLVQLALDTKREEIERREEQLKQREEELE 38 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444333
No 352
>PRK04406 hypothetical protein; Provisional
Probab=23.87 E-value=5e+02 Score=23.92 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 649 SLNLRLQEAEAKAAASEER 667 (967)
Q Consensus 649 sL~~RL~elE~kl~~A~er 667 (967)
.|..||.+||.+++-...-
T Consensus 8 ~le~Ri~~LE~~lAfQE~t 26 (75)
T PRK04406 8 QLEERINDLECQLAFQEQT 26 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667888887777654333
No 353
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=23.78 E-value=9.9e+02 Score=26.19 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------
Q 002095 649 SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAA-------- 720 (967)
Q Consensus 649 sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aa-------- 720 (967)
+|-..|.++...+......-..++..+..-...+...+.++.....+...|+..+..-...+..++..+..+
T Consensus 35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~ 114 (202)
T PF06818_consen 35 SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQ 114 (202)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhc
Q ss_pred ---------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 721 ---------------KEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIER 765 (967)
Q Consensus 721 ---------------kee~~~le~r~~~LEeeL~eLr~k~~~elqea~~~~~~Lqq~lE~ 765 (967)
-.....+...+..|..+|...|............++..|+.+-+.
T Consensus 115 ~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKek 174 (202)
T PF06818_consen 115 LLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEK 174 (202)
T ss_pred cccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 354
>PF13514 AAA_27: AAA domain
Probab=23.77 E-value=1.9e+03 Score=29.45 Aligned_cols=526 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHH
Q 002095 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKM---------MNENEHLKAVIEDLKR-KTNDAELETLREEYHQRV 409 (967)
Q Consensus 340 ~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L---------~e~n~~L~~~~e~l~~-~~~~~~~~~L~eEy~qRI 409 (967)
.......+++.+..++..++....++..+..+...| -....+|..++..+.. ..-..+...--.....++
T Consensus 172 ~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~ 251 (1111)
T PF13514_consen 172 RAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEEL 251 (1111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002095 410 ATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKL 489 (967)
Q Consensus 410 ~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~Kl 489 (967)
..++..+..+..+.+.++.+.....-...+|...+.+......-|. -.+....+-+++.++.....++..+...+
T Consensus 252 ~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~-----~~~~~~dl~~~~~e~~~~~~~~~~~~~~l 326 (1111)
T PF13514_consen 252 AEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGE-----YRKARQDLPRLEAELAELEAELRALLAQL 326 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred H---------------HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------HHHHHHHHHH
Q 002095 490 Q---------------VEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAA----------AKEAEELAEA 544 (967)
Q Consensus 490 E---------------~e~~klesikr~~~a~EK~lqe~iek~q~eL~a~k~~~~~~L~~----------AKe~e~lAE~ 544 (967)
- .....+..+.+........+. ..+..+......+...-.. .-....+..+
T Consensus 327 g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~----~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~ 402 (1111)
T PF13514_consen 327 GPDWDEEDLEALDPSLAARERIRELLQEREQLEQALA----QARRELEEAERELEQLQAELAALPAPPDPEALRAALEAA 402 (1111)
T ss_pred CCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 545 RANNEARAELESRLREAGERETMLVQALEELR--------------------QTLSRTEQQAVFREDMLRRDIEDLQRRY 604 (967)
Q Consensus 545 ra~~Ea~~~Le~~lkEaeere~~L~qqIedLR--------------------e~L~Raeq~a~~rEeeLR~EIs~Le~RL 604 (967)
...-.....+.............+.+.+..|. ..+.+.-.........++..+..+...+
T Consensus 403 ~~~~d~~~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1111)
T PF13514_consen 403 QRLGDLEARLQEAEQALEAAERRLAAALAALGPWSGDLDALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEEL 482 (1111)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhc--cCCcCchHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 002095 605 QASERRCEELVTQ--VPESTRPLLRQIEAIQETTARRAEAWAAVER--------------SLNLRLQEAEAKAAASEERE 668 (967)
Q Consensus 605 EeaEsRaEELSss--vseATrPLLRQIEtLQ~q~asqsenWe~iE~--------------sL~~RL~elE~kl~~A~erE 668 (967)
..++.+...+..+ ++. -+.|...-..+-..|.. . .-...|++.--.-+....+-
T Consensus 483 ~~~~~~~~~l~~~~~v~t--------~~~l~~aR~~Rd~~W~~--~~~~~~~~~~fe~a~~~aD~laD~~~~~a~~~a~~ 552 (1111)
T PF13514_consen 483 ARLEARLRRLAAAGDVPT--------EEELAAARARRDAAWQL--AALDAALAEAFEAAVREADELADRRLREAERAARL 552 (1111)
T ss_pred HHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHHHhcc--cCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhHHHHHHHHHHHHHHHh
Q 002095 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK-------------------ERQRAAENRQEYLAAKEEADTQEG 729 (967)
Q Consensus 669 r~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~-------------------Er~r~~~~r~e~~aakee~~~le~ 729 (967)
+.+..++.....++..+...+..+......+...... .+..+......+..+..++..+..
T Consensus 553 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~~p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1111)
T PF13514_consen 553 AQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPLSPAEMRDWLARREAALEAAEELRAARAELEALRA 632 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhccccCCccccccccccCCCccccCC
Q 002095 730 RANQLEEEIKELRRKHKQ--ELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLS 807 (967)
Q Consensus 730 r~~~LEeeL~eLr~k~~~--elqea~~~~~~Lqq~lE~Ek~~r~elE~~~~~~s~~~s~q~~~~~~~s~f~~~s~tr~lS 807 (967)
+...+...|...-...-. .+.........+-..++.....+..++....
T Consensus 633 ~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~----------------------------- 683 (1111)
T PF13514_consen 633 RRAAARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQ----------------------------- 683 (1111)
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q ss_pred CCCCCCcchhhhhhccccCCCCcccccCCCCCCCCCcccccCCChhHHHHHHhhhhhhHHHHHHHHHhHHHHHH------
Q 002095 808 SASSLGSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRD------ 881 (967)
Q Consensus 808 s~sS~gs~~~s~~lq~s~d~sd~~s~~~~~g~~s~S~~~~~s~tpS~LqA~LRrrEGEla~Lq~ELarLes~Rd------ 881 (967)
.+...+...+.++..++..+......-.
T Consensus 684 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~ 717 (1111)
T PF13514_consen 684 ----------------------------------------------QLEQELEEAEAELQEAQEALEEWQEEWQEALAEL 717 (1111)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHhHHHHH
Q 002095 882 ------------SLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGE------RDEELEELRADIMDLK 943 (967)
Q Consensus 882 ------------~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGE------KsEeVEELraDV~DVK 943 (967)
..-..|-.+......+.....++..++..+..+..+...++.-||. -.+.+..|+..+.+.+
T Consensus 718 gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~ 797 (1111)
T PF13514_consen 718 GLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAR 797 (1111)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhc
Q 002095 944 EMYREQVNLLVNKIQVM 960 (967)
Q Consensus 944 eMYR~QIdeLlkQi~~L 960 (967)
.. ...++.+-.++..+
T Consensus 798 ~~-~~~~~~l~~~~~~~ 813 (1111)
T PF13514_consen 798 EA-QEERERLQEQLEEL 813 (1111)
T ss_pred HH-HHHHHHHHHHHHHH
No 355
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.71 E-value=9e+02 Score=26.27 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=51.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002095 901 AAILPGIQAELDALRRRHSAALELMGE----RDEELEELRADIMDLKEMYREQVNLLVNKIQVM 960 (967)
Q Consensus 901 ~~~v~~Le~eleeLqqRYeTlLELLGE----KsEeVEELraDV~DVKeMYR~QIdeLlkQi~~L 960 (967)
+..+.+.++.++-.-..|+++|.=.+- |..+|+|...+|.=.+..|+..-=+.|-||+.+
T Consensus 100 l~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~i 163 (200)
T cd07639 100 LRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVEEAAAALLGARATFRDRALDYALQINVI 163 (200)
T ss_pred hHHHHHHhhhHhhcchhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999999999999988885 788999999999999999999887788887654
No 356
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.65 E-value=7.7e+02 Score=24.87 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=7.0
Q ss_pred HhhhhHHHHHHHHHHH
Q 002095 521 LGEQKDYYTNALAAAK 536 (967)
Q Consensus 521 L~a~k~~~~~~L~~AK 536 (967)
+...+..|...+..|+
T Consensus 57 a~~~~~e~e~~l~~Ar 72 (141)
T PRK08476 57 VSEIEHEIETILKNAR 72 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 357
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.65 E-value=9.1e+02 Score=25.74 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 002095 595 RDIEDLQRRYQASERRCEELVTQVPE 620 (967)
Q Consensus 595 ~EIs~Le~RLEeaEsRaEELSssvse 620 (967)
.++..|+.++..+....+.++..-|+
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 44444444444444444444443343
No 358
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.49 E-value=2.8e+02 Score=31.89 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 002095 347 LKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLK 390 (967)
Q Consensus 347 l~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~ 390 (967)
++..+..++..|..+..+|+.+..+++.+......|+.+.+...
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~ 262 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ 262 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666665433
No 359
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.47 E-value=9e+02 Score=25.63 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHH
Q 002095 903 ILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLL 953 (967)
Q Consensus 903 ~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeL 953 (967)
+...|+.++..|+.++..+- .+++.|..++.-+++=|+.+|.-|
T Consensus 105 e~~~l~~e~~~l~~~~e~Le-------~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELE-------KELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666776666553 357788888888888899888544
No 360
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=23.46 E-value=7.9e+02 Score=24.93 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 002095 340 SVCELEKLKREMKMMETALQGA----ARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRV 409 (967)
Q Consensus 340 ~~~e~~kl~~~~~~~~~~l~~~----~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI 409 (967)
-+.++.-|-.++..|++-=..+ .++.......++++.+..+++...+..+... +++.-.+++|-+=+
T Consensus 25 v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~---~~~r~yk~eYk~ll 95 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD---SKVRWYKDEYKELL 95 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---GGGSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---cchhHHHHHHHHHH
Confidence 3446666766666665544433 2444455556666666666665555555442 34444566665433
No 361
>PRK04406 hypothetical protein; Provisional
Probab=23.33 E-value=5.9e+02 Score=23.46 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 553 ELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQ 605 (967)
Q Consensus 553 ~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLE 605 (967)
.++.++.+++.+..-+...|++|...+-+.. ...+.|+..+..|..|+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq----~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQ----LLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3566777777766656667888877775432 122344444555544444
No 362
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=23.18 E-value=7.5e+02 Score=27.67 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHH
Q 002095 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLK 943 (967)
Q Consensus 864 GEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVK 943 (967)
-|+..+-|+-..|+-.+-+|--=|.--|.-++++++--+.+..++..++....-.+-++.|-|-|-|+-=+|+--+..|.
T Consensus 40 ~ei~a~~~ee~~leey~~em~~lL~ekm~Hveelr~iHadiN~men~ikq~k~~~~~~~~~~~r~~eey~~lk~h~d~lR 119 (286)
T KOG4451|consen 40 FEICAFTWEEENLEEYELEMGVLLLEKMGHVEELREIHADINEMENDIKQVKALEQHITSCNGRKGEEYMELKSHADELR 119 (286)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 57778888888888888777655555566666666555555555555444444445578888888888777777777777
Q ss_pred HHHH
Q 002095 944 EMYR 947 (967)
Q Consensus 944 eMYR 947 (967)
.||-
T Consensus 120 ~~~l 123 (286)
T KOG4451|consen 120 QINL 123 (286)
T ss_pred HHhc
Confidence 6663
No 363
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.17 E-value=4.3e+02 Score=27.38 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=31.7
Q ss_pred cccCCChh---HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 002095 846 YVKSMTPS---AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSA 920 (967)
Q Consensus 846 ~~~s~tpS---~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeT 920 (967)
++.++||+ .++........+...|+.+|- +.|.+|+..+..=.-.-+.+++..+++..|+.++.++.-.|+.
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~---aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLV---SKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567775 344444444444444444332 3344444433333223333344444444444444444444433
No 364
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=23.01 E-value=4.5e+02 Score=32.86 Aligned_cols=75 Identities=35% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---HHHhh-hhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002095 414 RKVYALTKERDTL---RREQN-KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKL 489 (967)
Q Consensus 414 rKlq~L~KErD~L---Kke~~-k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~Kl 489 (967)
+-+..|+.|..+| |..++ -++|+-+++.|=.---.-|+ ||.++.++.+. ||-.+|+++|++++.++.++
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLr--gElea~kqak~-----Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLR--GELEAVKQAKL-----KLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHh--hHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 002095 490 QVEENK 495 (967)
Q Consensus 490 E~e~~k 495 (967)
..-+.+
T Consensus 374 ~~ar~~ 379 (832)
T KOG2077|consen 374 EDARQK 379 (832)
T ss_pred HHHHHh
No 365
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.99 E-value=5.4e+02 Score=23.44 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQA 606 (967)
Q Consensus 554 Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEe 606 (967)
++.++.+++.+..-....|++|...+-+.. ...+.|+..+..|..|+.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq----~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHE----MEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 556677777766555667888887775432 2224445555555555543
No 366
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=22.79 E-value=1.2e+03 Score=26.99 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 666 ERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 666 erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE 704 (967)
.||..++..|..+..+.+.+..+++.+|....+++-.+.
T Consensus 266 SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~ 304 (384)
T KOG0972|consen 266 SREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 344444444444444555555555555544444443333
No 367
>PRK00106 hypothetical protein; Provisional
Probab=22.76 E-value=1.5e+03 Score=28.10 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHH
Q 002095 516 KHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRT---EQ-QAVFRED 591 (967)
Q Consensus 516 k~q~eL~a~k~~~~~~L~~AKe~e~lAE~ra~~Ea~~~Le~~lkEaeere~~L~qqIedLRe~L~Ra---eq-~a~~rEe 591 (967)
++...-.+-.-++-.+...|++.-.-|+.+++.-.............+....+..++...|..+++. +. +...+|.
T Consensus 25 ~~~~~~~~~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~ 104 (535)
T PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIES 104 (535)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 002095 592 MLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRL------QEAEAKAAASE 665 (967)
Q Consensus 592 eLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL------~elE~kl~~A~ 665 (967)
+|...-..|..|.+.++.+-.+|.. ..+.++..+..+.......+.+......+| ..-+.+---..
T Consensus 105 rL~qREE~LekRee~LekrE~eLe~--------kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~ 176 (535)
T PRK00106 105 RLTERATSLDRKDENLSSKEKTLES--------KEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILA 176 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 666 ERERSVNERLSQTLSRINVLEAQISC 691 (967)
Q Consensus 666 erEr~~~ekl~~~~~ri~~LE~els~ 691 (967)
+-+..++..+... ++..+.+...
T Consensus 177 ~~~~~~~~~~~~~---i~~~e~~a~~ 199 (535)
T PRK00106 177 ETENKLTHEIATR---IREAEREVKD 199 (535)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHH
No 368
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=22.73 E-value=6e+02 Score=24.63 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHH
Q 002095 855 FESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPG---IQAELDALRRRHSAA 921 (967)
Q Consensus 855 LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~---Le~eleeLqqRYeTl 921 (967)
|+..+-..-.+...++.+|..++..|-.+...-..|+.+..++..+.+.-.. +..++..++..|...
T Consensus 1 Ls~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~ 70 (106)
T PF05837_consen 1 LSLEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKS 70 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
No 369
>PRK00846 hypothetical protein; Provisional
Probab=22.66 E-value=5.3e+02 Score=24.09 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002095 649 SLNLRLQEAEAKAAASEE 666 (967)
Q Consensus 649 sL~~RL~elE~kl~~A~e 666 (967)
.|..||.++|.+++-...
T Consensus 10 ~le~Ri~~LE~rlAfQe~ 27 (77)
T PRK00846 10 ALEARLVELETRLSFQEQ 27 (77)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 466777777777664333
No 370
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.57 E-value=6.2e+02 Score=23.38 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=12.4
Q ss_pred HHhhHHHHHHHHHHHhHHhhHH
Q 002095 439 LLKEKDEIINQVMAEGEELSKK 460 (967)
Q Consensus 439 ~LkEKDE~IaqLmEEGEKLSKk 460 (967)
....+++.+..|-+.-+.|.+.
T Consensus 56 v~~~~~~~~~~L~~~~~~~~~~ 77 (106)
T PF01920_consen 56 VKQDKEEAIEELEERIEKLEKE 77 (106)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 3446666666665555555443
No 371
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.50 E-value=8.3e+02 Score=24.87 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=6.5
Q ss_pred hhhhHHHHHHHHHHH
Q 002095 522 GEQKDYYTNALAAAK 536 (967)
Q Consensus 522 ~a~k~~~~~~L~~AK 536 (967)
......|...+..|+
T Consensus 73 ~~~~~e~e~~L~~A~ 87 (156)
T CHL00118 73 NELTKQYEQELSKAR 87 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 372
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.31 E-value=3.4e+02 Score=23.55 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRA 899 (967)
Q Consensus 864 GEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~ 899 (967)
..+..|...+..|+..-+.|..++..|..++..|..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555555543
No 373
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.20 E-value=8e+02 Score=27.43 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 367 AKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
....+++++.+.|..|..+|..+..
T Consensus 10 ~l~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 10 ELEAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555666666666665553
No 374
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.18 E-value=8.1e+02 Score=24.62 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002095 682 INVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 682 i~~LE~els~lr~E~~~L~~qLE 704 (967)
+..+..++..+.....+|..+++
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~ 83 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLE 83 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 375
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.05 E-value=6.6e+02 Score=23.51 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002095 721 KEEADTQEGRANQLEEEIKELRRKHKQELQ 750 (967)
Q Consensus 721 kee~~~le~r~~~LEeeL~eLr~k~~~elq 750 (967)
..++......+-.||..-..++..|+.++.
T Consensus 38 i~Em~~ir~~v~eLE~~h~kmK~~YEeEI~ 67 (79)
T PF08581_consen 38 IQEMQQIRQKVYELEQAHRKMKQQYEEEIA 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666655543
No 376
>PRK04325 hypothetical protein; Provisional
Probab=22.03 E-value=5.8e+02 Score=23.38 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 649 SLNLRLQEAEAKAAASEER 667 (967)
Q Consensus 649 sL~~RL~elE~kl~~A~er 667 (967)
++..||.+||.+++-...-
T Consensus 6 ~~e~Ri~~LE~klAfQE~t 24 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDL 24 (74)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3566777777776643333
No 377
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.94 E-value=1.1e+03 Score=25.89 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 864 GELASYMSRLASMESIRDSLAEELVKMTAQC 894 (967)
Q Consensus 864 GEla~Lq~ELarLes~Rd~L~eELVrLt~En 894 (967)
.|+++++.-|..-...|...-++||.-++..
T Consensus 204 ~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~y 234 (247)
T PF06705_consen 204 EEIAALKNALALESQEREQSDDDIVQALNHY 234 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6888888999988999999999999877643
No 378
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=21.74 E-value=5.5e+02 Score=29.94 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHH
Q 002095 570 QALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAE 641 (967)
Q Consensus 570 qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqse 641 (967)
..|.+|=..|-|..+....-+.+|+.|.+.++.|+..++.+++=+ ++--+.||-||...++
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~-----------~~~~~~~~~qyrecqe 68 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELI-----------IKEREDLQQQYRECQE 68 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHH
Confidence 356667777777777788889999999999999999999888755 4467788888877654
No 379
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=21.74 E-value=7.3e+02 Score=24.75 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 002095 678 TLSRINVLEAQISCLRAEQTQL-TKSLEKERQ 708 (967)
Q Consensus 678 ~~~ri~~LE~els~lr~E~~~L-~~qLE~Er~ 708 (967)
+..+|+.||.+++..+..+.+. ..+||.+++
T Consensus 5 mElrIkdLeselsk~Ktsq~d~~~~eLEkYkq 36 (111)
T PF12001_consen 5 MELRIKDLESELSKMKTSQEDSNKTELEKYKQ 36 (111)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHH
Confidence 4457899999999988777766 677887764
No 380
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=1.7e+03 Score=28.08 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 595 RDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAE 658 (967)
Q Consensus 595 ~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE 658 (967)
.+|..|+..|-.|-.+..++. +.--+..++||+|-=-+-|.--..--++.+.-|+.=+.+.+
T Consensus 394 Eec~kme~qLkkAh~~~ddar--~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeve 455 (654)
T KOG4809|consen 394 EECSKMEAQLKKAHNIEDDAR--MNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVE 455 (654)
T ss_pred HHHHHHHHHHHHHHHhhHhhh--cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444432 22334455555555555554444444444444444444443
No 381
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.61 E-value=5.9e+02 Score=26.90 Aligned_cols=56 Identities=27% Similarity=0.483 Sum_probs=37.0
Q ss_pred HHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhH
Q 002095 437 AALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKV 496 (967)
Q Consensus 437 ~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~KlE~e~~kl 496 (967)
...|-++|..+..++++ -.........|..||+.+..++..++.+-.+|......+
T Consensus 4 ~~~L~~~d~~L~~~L~~----l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 4 AEDLIEADDELSSALEE----LQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777776654 344666677788888888888877777766555444333
No 382
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=21.61 E-value=1.3e+03 Score=28.21 Aligned_cols=101 Identities=30% Similarity=0.387 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002095 356 TALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSD 435 (967)
Q Consensus 356 ~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~s~ 435 (967)
..++.-.|.|..+.++++.|.-.-..=+.+ +++|-. +=||-.+|++..+ .-+|..|+++. .
T Consensus 322 ~~~~~~~~~l~~k~k~~~e~~~~~~~kk~~------------~eeLES--IVRiKqAEA~MFQ--~kAdEARrEAE---~ 382 (446)
T PF07227_consen 322 LALETCDRELEDKAKEVAELQFERQRKKPQ------------IEELES--IVRIKQAEAKMFQ--LKADEARREAE---G 382 (446)
T ss_pred hhhhhhhhHHHhhhhhhhhhhHHhhhcccc------------hHHHHH--HHHHHHHHHHHHH--HHHHHHHHHHH---H
Confidence 444444566666666666665433222222 222222 5789999999875 34455555542 2
Q ss_pred HHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002095 436 AAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQ 490 (967)
Q Consensus 436 ~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~Lk~KlE 490 (967)
+...+.-|.++|.+ .+-+.|-|||-. |.|++.+.+=.++.
T Consensus 383 LqrI~~aK~~k~EE-------------EYas~~~kl~l~--eaee~r~~~~eelk 422 (446)
T PF07227_consen 383 LQRIALAKSEKIEE-------------EYASRYLKLRLN--EAEEERKKKFEELK 422 (446)
T ss_pred HHHHHHHhHHHHHH-------------HHHHHHHhhhhH--HHHHHHHHHHHHHH
Confidence 44455556666653 344556677743 55544444444444
No 383
>PRK02119 hypothetical protein; Provisional
Probab=21.10 E-value=3.8e+02 Score=24.52 Aligned_cols=11 Identities=0% Similarity=0.229 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 002095 409 VATLERKVYAL 419 (967)
Q Consensus 409 I~aLErKlq~L 419 (967)
|+.|++.+..|
T Consensus 39 id~L~~ql~~L 49 (73)
T PRK02119 39 IDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 384
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.96 E-value=4.7e+02 Score=24.63 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
..+=+.|.++|..|...|++---....--.+..+|..+|+-|+.=|..|-.
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888888888888865333334444555566666666555555543
No 385
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=20.92 E-value=2.6e+02 Score=24.32 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 350 EMKMMETALQG----AARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 350 ~~~~~~~~l~~----~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
+|.+|+..+-+ +-.--..-...|++|..+|..|+++++.++.
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555554443 3212234567899999999999999987654
No 386
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.87 E-value=3.4e+02 Score=33.14 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 555 ESRLREAGERETMLVQALEELRQTLS---RTEQQAVFREDMLRRDIEDLQRRYQAS 607 (967)
Q Consensus 555 e~~lkEaeere~~L~qqIedLRe~L~---Raeq~a~~rEeeLR~EIs~Le~RLEea 607 (967)
..++.+...+-..|..+|+.||..++ +..+....+-+.|..||..|+.+++++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
No 387
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.84 E-value=3.4e+02 Score=30.49 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=6.9
Q ss_pred chhccCCCCCCCCCcc
Q 002095 136 FVVSEHGKVDSESNIV 151 (967)
Q Consensus 136 ~~~~~~~~~~~~~~~~ 151 (967)
..+.|.+.......+.
T Consensus 42 ~~~~~~~~~~~~~~l~ 57 (269)
T KOG3119|consen 42 EALQDLDVGLSNVDLP 57 (269)
T ss_pred hhcccccccccccCCc
Confidence 3444444444444444
No 388
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.81 E-value=1.4e+03 Score=26.77 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 002095 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE-------------RERSVNERLSQTLSRINVLEAQI 689 (967)
Q Consensus 623 rPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~e-------------rEr~~~ekl~~~~~ri~~LE~el 689 (967)
.-|+||||.-|...-. +|+.-.+++.+.|+-.....+ --|..+.+..+++...+.||-+|
T Consensus 10 ~EL~kQiEIcqEENki-------LdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 10 QELMKQIEICQEENKI-------LDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999888876654 777777777777753322222 23334445555555555555555
Q ss_pred HHHH
Q 002095 690 SCLR 693 (967)
Q Consensus 690 s~lr 693 (967)
+.++
T Consensus 83 ARaK 86 (351)
T PF07058_consen 83 ARAK 86 (351)
T ss_pred HHhh
Confidence 4443
No 389
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.66 E-value=6.9e+02 Score=23.24 Aligned_cols=8 Identities=13% Similarity=0.625 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002095 593 LRRDIEDL 600 (967)
Q Consensus 593 LR~EIs~L 600 (967)
.+..+..|
T Consensus 44 I~~~f~~l 51 (127)
T smart00502 44 IKAAFDEL 51 (127)
T ss_pred HHHHHHHH
Confidence 33333333
No 390
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.58 E-value=1.1e+03 Score=25.65 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHH
Q 002095 339 DSVCELEKLKREMKMMETALQGAARQAQA----KADEIAKMMNENEHLKA 384 (967)
Q Consensus 339 ~~~~e~~kl~~~~~~~~~~l~~~~r~~~~----k~~~~a~L~e~n~~L~~ 384 (967)
|.--|.-.|++++..|+.-|..+.+.... -....+-+..+.++|..
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 55568889999999999999987666544 11233444556666543
No 391
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=20.57 E-value=1.4e+03 Score=26.76 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.3
Q ss_pred hHHHHHHHHH
Q 002095 729 GRANQLEEEI 738 (967)
Q Consensus 729 ~r~~~LEeeL 738 (967)
..+..++..+
T Consensus 241 ~~l~~~~~~l 250 (421)
T TIGR03794 241 YEIEELENKL 250 (421)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 392
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.54 E-value=3.3e+02 Score=32.43 Aligned_cols=78 Identities=24% Similarity=0.273 Sum_probs=42.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHH
Q 002095 867 ASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMY 946 (967)
Q Consensus 867 a~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMY 946 (967)
..++.++..|..+...+..++.++......+..... ....-.+...+|..+...+.+..+++.+|+..+..|++.+
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK----QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555444442111 1111124445555556666666666666666666666555
Q ss_pred HH
Q 002095 947 RE 948 (967)
Q Consensus 947 R~ 948 (967)
+.
T Consensus 406 ~~ 407 (451)
T PF03961_consen 406 ER 407 (451)
T ss_pred Hh
Confidence 43
No 393
>PRK10722 hypothetical protein; Provisional
Probab=20.46 E-value=3e+02 Score=30.84 Aligned_cols=57 Identities=33% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE 647 (967)
|+.++.+-|..+.|..+....+-+.||....+|+.+|.....+.|-|+. ||
T Consensus 156 l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd-----------------------------IE 206 (247)
T PRK10722 156 LQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTD-----------------------------IE 206 (247)
T ss_pred HHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HH
Q ss_pred HHHHHH
Q 002095 648 RSLNLR 653 (967)
Q Consensus 648 ~sL~~R 653 (967)
++|..|
T Consensus 207 RqLSsR 212 (247)
T PRK10722 207 RQLSSR 212 (247)
T ss_pred HHhccC
No 394
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.40 E-value=3.3e+02 Score=26.69 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=21.7
Q ss_pred HHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA 901 (967)
Q Consensus 858 ~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~ 901 (967)
.|.+++..+..+-.+|..|...-..+-+|=.+|..+|+.|+..+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555444444444455555555555555443
No 395
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.39 E-value=1.1e+03 Score=25.25 Aligned_cols=104 Identities=23% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKER 423 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KEr 423 (967)
|.+++.++.++-.+++ ....+.+.-.-++. -+-...+.+|..+|..|+.....|.++.
T Consensus 86 L~rvrde~~~~l~~y~--------------------~l~~s~~~f~~rk~--l~~e~~~~~l~~~i~~L~~e~~~L~~~~ 143 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQ--------------------TLYESSIAFGMRKA--LQAEQGKQELEEEIEELEEEKEELEKQV 143 (189)
T ss_pred HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 424 DTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (967)
Q Consensus 424 D~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~L 485 (967)
. .|..+.+.+. ..+.+.+....-.|...|..|+..+..+...++.+
T Consensus 144 ~--------------~l~~~~e~~e--k~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 144 Q--------------ELKNKCEQLE--KREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred H--------------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 396
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.36 E-value=1.7e+03 Score=27.80 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002095 406 HQRVATLERKVYALTKERDTL 426 (967)
Q Consensus 406 ~qRI~aLErKlq~L~KErD~L 426 (967)
..++..+++++..+..+.+.+
T Consensus 208 ~~~~~~le~el~~l~~~~e~l 228 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDL 228 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 397
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.26 E-value=6.8e+02 Score=22.98 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 002095 906 GIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKIQVMG 961 (967)
Q Consensus 906 ~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeLlkQi~~L~ 961 (967)
.-.+++.+.+.-|..+=-|+|.-.-+..-|.+.|..| -.||+.|-.+++.|+
T Consensus 18 ~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~L----s~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 18 SYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNL----SQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhc
Confidence 3466777888888888888888888888777777776 667777777777664
No 398
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.25 E-value=1.3e+03 Score=26.20 Aligned_cols=19 Identities=53% Similarity=0.622 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 682 INVLEAQISCLRAEQTQLT 700 (967)
Q Consensus 682 i~~LE~els~lr~E~~~L~ 700 (967)
+..++.++..|+++...|+
T Consensus 202 i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 202 IDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 399
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=20.24 E-value=6.1e+02 Score=29.03 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccch--hHHHHHHHhHHHHHHHH
Q 002095 902 AILPGIQAELDALRRRHSAALELMGERD--EELEELRADIMDLKEMY 946 (967)
Q Consensus 902 ~~v~~Le~eleeLqqRYeTlLELLGEKs--EeVEELraDV~DVKeMY 946 (967)
.++..|...+.++...|..+++.|||.. -..++.=.-|.+.-.+|
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~f 369 (370)
T PF02181_consen 323 TKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDMF 369 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999955 45555555555554444
No 400
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.10 E-value=7.6e+02 Score=23.47 Aligned_cols=75 Identities=24% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 349 REMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRR 428 (967)
Q Consensus 349 ~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKk 428 (967)
.||-.|+.++.....++..|-.+++-|++.-.-|..++. -+-+..-++.+....+.-|...|+.
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~----------------kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKA----------------KADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556666665545555555555555554444433332 1124444555555555555555555
Q ss_pred HhhhhhHHHHH
Q 002095 429 EQNKKSDAAAL 439 (967)
Q Consensus 429 e~~k~s~~~a~ 439 (967)
...+.++.-..
T Consensus 67 ~~~Ks~~~i~~ 77 (96)
T PF08647_consen 67 QLSKSSELIEQ 77 (96)
T ss_pred HHHHhHHHHHH
Confidence 55555443333
No 401
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=20.06 E-value=2.5e+02 Score=29.18 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002095 682 INVLEAQISCLRAEQTQLTKSLEKERQRAAENRQ-EYLAAKEEADTQEGRANQLEEEIKELR 742 (967)
Q Consensus 682 i~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~-e~~aakee~~~le~r~~~LEeeL~eLr 742 (967)
...|+.+|..++.+...+...+..-|..=--+.. +|.+++.+...++.|+..|+..|..++
T Consensus 13 ~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~ 74 (158)
T PRK05892 13 RDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGP 74 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCE
Done!