Query 002095
Match_columns 967
No_of_seqs 130 out of 152
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 12:08:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.2 0.0076 2.6E-07 60.8 45.3 14 411-424 3-16 (284)
2 1c1g_A Tropomyosin; contractIl 98.0 0.019 6.6E-07 57.8 43.9 47 344-390 1-47 (284)
3 1i84_S Smooth muscle myosin he 97.8 4.2E-05 1.4E-09 96.7 10.7 23 339-361 854-876 (1184)
4 1i84_S Smooth muscle myosin he 97.7 8.7E-05 3E-09 93.8 10.3 21 467-487 879-899 (1184)
5 3na7_A HP0958; flagellar bioge 96.8 0.54 1.8E-05 49.8 26.0 80 553-635 108-187 (256)
6 3o0z_A RHO-associated protein 96.5 0.22 7.4E-06 50.3 19.2 140 563-706 6-155 (168)
7 2v71_A Nuclear distribution pr 96.0 1.8 6E-05 44.6 24.1 120 568-691 22-148 (189)
8 3na7_A HP0958; flagellar bioge 95.9 1.7 5.8E-05 45.9 23.7 128 342-474 11-140 (256)
9 2efr_A General control protein 95.9 1.7 5.7E-05 43.4 22.5 59 578-640 60-118 (155)
10 2efr_A General control protein 95.7 2 6.8E-05 42.9 25.6 37 600-647 26-62 (155)
11 3vkg_A Dynein heavy chain, cyt 95.5 5.1 0.00017 55.9 31.6 89 650-745 2012-2100(3245)
12 2v71_A Nuclear distribution pr 94.7 3.3 0.00011 42.5 20.3 53 552-604 52-104 (189)
13 3tnu_B Keratin, type II cytosk 94.0 1 3.4E-05 43.2 14.1 104 639-752 2-105 (129)
14 3tnu_A Keratin, type I cytoske 93.6 0.97 3.3E-05 43.5 13.2 105 638-752 3-107 (131)
15 2dfs_A Myosin-5A; myosin-V, in 93.3 3.2 0.00011 52.5 20.6 12 338-349 753-764 (1080)
16 2dfs_A Myosin-5A; myosin-V, in 93.2 1.9 6.4E-05 54.6 18.4 24 592-615 925-948 (1080)
17 3vkg_A Dynein heavy chain, cyt 91.8 45 0.0015 47.0 29.9 26 925-950 2380-2405(3245)
18 2v66_B Nuclear distribution pr 87.6 19 0.00066 34.1 17.1 41 557-597 4-44 (111)
19 3mq7_A Bone marrow stromal ant 87.6 11 0.00037 36.0 13.5 49 568-616 51-99 (121)
20 3o0z_A RHO-associated protein 86.8 29 0.00098 35.1 24.3 110 620-747 6-115 (168)
21 3mq7_A Bone marrow stromal ant 86.3 6.7 0.00023 37.4 11.3 78 859-943 27-105 (121)
22 3ghg_A Fibrinogen alpha chain; 85.6 19 0.00064 42.1 16.7 42 650-691 115-156 (562)
23 3ol1_A Vimentin; structural ge 85.4 8 0.00027 36.7 11.7 96 863-958 19-118 (119)
24 2fxo_A Myosin heavy chain, car 84.7 24 0.00083 33.7 14.8 111 854-964 10-127 (129)
25 3oja_B Anopheles plasmodium-re 84.5 5.4 0.00018 46.1 12.1 21 568-588 454-474 (597)
26 3bas_A Myosin heavy chain, str 80.5 8.6 0.00029 34.7 9.3 47 854-900 11-57 (89)
27 3mq9_A Bone marrow stromal ant 80.5 36 0.0012 38.2 16.7 40 668-707 399-438 (471)
28 3ol1_A Vimentin; structural ge 80.2 40 0.0014 31.8 14.3 22 727-748 88-109 (119)
29 2v66_B Nuclear distribution pr 79.8 42 0.0014 31.8 16.0 32 568-600 75-106 (111)
30 2b9c_A Striated-muscle alpha t 79.6 50 0.0017 32.5 16.2 90 651-740 23-112 (147)
31 3u1c_A Tropomyosin alpha-1 cha 78.6 41 0.0014 31.0 15.8 56 651-706 8-63 (101)
32 3ghg_A Fibrinogen alpha chain; 78.4 25 0.00086 41.0 14.3 107 573-704 49-155 (562)
33 3trt_A Vimentin; cytoskeleton, 77.4 29 0.00098 30.0 11.4 66 625-690 7-73 (77)
34 2ocy_A RAB guanine nucleotide 75.7 22 0.00076 35.4 11.3 90 857-946 51-145 (154)
35 3q8t_A Beclin-1; autophagy, AT 75.6 49 0.0017 30.3 13.5 81 343-432 5-85 (96)
36 3u59_A Tropomyosin beta chain; 75.6 49 0.0017 30.3 15.7 56 652-707 9-64 (101)
37 2jee_A YIIU; FTSZ, septum, coi 75.1 19 0.00064 32.4 9.6 61 549-609 6-76 (81)
38 1ic2_A Tropomyosin alpha chain 74.5 45 0.0015 29.4 12.1 55 650-704 4-58 (81)
39 2oto_A M protein; helical coil 74.0 69 0.0024 31.3 16.9 10 438-447 96-105 (155)
40 3u59_A Tropomyosin beta chain; 74.0 54 0.0018 30.0 13.9 74 344-419 4-77 (101)
41 2fxo_A Myosin heavy chain, car 72.6 68 0.0023 30.6 19.3 44 669-712 23-66 (129)
42 1ic2_A Tropomyosin alpha chain 71.2 25 0.00084 31.1 9.5 72 345-418 2-73 (81)
43 3u1c_A Tropomyosin alpha-1 cha 71.0 64 0.0022 29.6 14.4 49 344-392 4-52 (101)
44 3a7o_A Autophagy protein 16; c 70.1 15 0.00051 32.3 7.4 50 854-903 22-71 (75)
45 3tnu_A Keratin, type I cytoske 70.1 18 0.00063 34.6 9.1 48 904-951 61-112 (131)
46 3mq9_A Bone marrow stromal ant 69.5 95 0.0033 34.8 16.4 46 570-615 425-470 (471)
47 3q8t_A Beclin-1; autophagy, AT 67.1 77 0.0026 29.0 12.8 47 854-900 8-54 (96)
48 2ocy_A RAB guanine nucleotide 66.5 1.1E+02 0.0037 30.5 20.7 28 553-580 119-146 (154)
49 3tnu_B Keratin, type II cytosk 66.1 37 0.0013 32.3 10.3 48 904-951 59-110 (129)
50 2jee_A YIIU; FTSZ, septum, coi 65.1 46 0.0016 30.0 9.8 67 858-924 7-77 (81)
51 2lw1_A ABC transporter ATP-bin 64.8 17 0.0006 32.5 7.3 55 594-648 21-84 (89)
52 1deq_A Fibrinogen (alpha chain 63.4 63 0.0022 36.4 12.7 45 646-690 114-158 (390)
53 3a7p_A Autophagy protein 16; c 63.1 1.1E+02 0.0037 30.5 13.0 66 625-701 66-131 (152)
54 2e7s_A RAB guanine nucleotide 62.6 9.5 0.00032 37.3 5.4 88 859-946 41-133 (135)
55 3s4r_A Vimentin; alpha-helix, 61.2 91 0.0031 28.4 11.4 62 367-432 20-81 (93)
56 3swk_A Vimentin; cytoskeleton, 61.0 37 0.0013 30.5 8.7 30 363-392 7-36 (86)
57 3a7p_A Autophagy protein 16; c 60.0 1.1E+02 0.0039 30.4 12.6 60 682-741 70-129 (152)
58 3ni0_A Bone marrow stromal ant 58.6 88 0.003 28.9 10.6 44 568-611 44-90 (99)
59 1d7m_A Cortexillin I; coiled-c 58.4 1.1E+02 0.0038 28.0 12.2 40 453-492 14-58 (101)
60 3swk_A Vimentin; cytoskeleton, 56.4 1.1E+02 0.0038 27.4 11.9 37 671-707 5-41 (86)
61 2v4h_A NF-kappa-B essential mo 56.2 1.4E+02 0.0047 28.3 11.8 12 628-639 25-36 (110)
62 1deq_A Fibrinogen (alpha chain 53.8 2.3E+02 0.0078 32.1 15.1 54 645-705 106-159 (390)
63 2eqb_B RAB guanine nucleotide 52.2 1.5E+02 0.0051 27.5 14.6 20 684-703 44-63 (97)
64 3hnw_A Uncharacterized protein 51.8 78 0.0027 30.8 9.9 23 367-389 65-87 (138)
65 2v4h_A NF-kappa-B essential mo 49.2 99 0.0034 29.3 9.6 34 342-375 24-57 (110)
66 3oja_A Leucine-rich immune mol 47.4 3.1E+02 0.011 30.7 15.5 36 443-478 440-475 (487)
67 2eqb_B RAB guanine nucleotide 46.3 1.6E+02 0.0056 27.2 10.5 24 868-891 9-32 (97)
68 3s4r_A Vimentin; alpha-helix, 46.3 1.7E+02 0.0058 26.5 12.1 31 670-700 13-43 (93)
69 3s9g_A Protein hexim1; cyclin 46.2 90 0.0031 29.1 8.7 78 343-431 7-89 (104)
70 3uun_A Dystrophin; triple heli 43.1 1.3E+02 0.0045 26.4 9.5 39 904-942 80-118 (119)
71 3nmd_A CGMP dependent protein 42.5 46 0.0016 29.4 5.9 47 853-899 22-68 (72)
72 4dzn_A Coiled-coil peptide CC- 42.1 41 0.0014 24.8 4.5 27 864-890 2-28 (33)
73 3ni0_A Bone marrow stromal ant 42.1 1.7E+02 0.0058 27.1 9.7 62 860-921 21-86 (99)
74 2rjz_A PILO protein; structura 41.4 24 0.00083 34.4 4.6 53 889-942 2-54 (147)
75 1m1j_A Fibrinogen alpha subuni 40.3 4.1E+02 0.014 30.8 14.6 50 642-691 108-157 (491)
76 1f5n_A Interferon-induced guan 40.3 2.5E+02 0.0084 33.3 13.7 120 344-481 461-582 (592)
77 1wt6_A Myotonin-protein kinase 40.0 1.4E+02 0.0049 26.8 8.7 23 593-615 36-58 (81)
78 3jsv_C NF-kappa-B essential mo 39.8 2E+02 0.0069 26.5 9.9 13 650-662 7-19 (94)
79 1dh3_A Transcription factor CR 38.0 1.2E+02 0.0041 25.0 7.5 42 351-392 7-51 (55)
80 1l8d_A DNA double-strand break 38.0 1.9E+02 0.0066 26.1 9.9 37 862-898 8-44 (112)
81 3cve_A Homer protein homolog 1 37.6 2.1E+02 0.0073 25.1 10.9 61 555-615 6-66 (72)
82 3cvf_A Homer-3, homer protein 36.4 2.3E+02 0.008 25.3 10.3 61 555-615 12-72 (79)
83 3i00_A HIP-I, huntingtin-inter 36.3 1.3E+02 0.0045 28.7 8.5 47 564-610 16-62 (120)
84 3bas_A Myosin heavy chain, str 36.2 2.4E+02 0.0081 25.3 10.1 50 559-612 38-87 (89)
85 1fxk_C Protein (prefoldin); ar 35.2 2.1E+02 0.0071 26.8 9.9 40 859-898 3-42 (133)
86 1gk4_A Vimentin; intermediate 34.5 1.2E+02 0.0041 26.9 7.5 48 904-951 10-61 (84)
87 2k48_A Nucleoprotein; viral pr 34.2 1.6E+02 0.0055 27.7 8.4 68 341-426 34-101 (107)
88 3m91_A Proteasome-associated A 33.9 97 0.0033 25.5 6.2 41 857-897 9-49 (51)
89 2yy0_A C-MYC-binding protein; 32.9 41 0.0014 27.8 3.9 27 591-617 22-48 (53)
90 2e7s_A RAB guanine nucleotide 32.8 3.5E+02 0.012 26.4 10.9 20 684-703 64-83 (135)
91 3nmd_A CGMP dependent protein 32.4 1.3E+02 0.0043 26.6 7.0 20 369-388 46-65 (72)
92 4h22_A Leucine-rich repeat fli 31.0 1.1E+02 0.0036 28.8 6.7 63 371-449 24-90 (103)
93 3cvf_A Homer-3, homer protein 30.8 2.7E+02 0.0091 24.9 9.0 26 680-705 13-38 (79)
94 2lw1_A ABC transporter ATP-bin 29.8 1.3E+02 0.0044 26.8 7.0 24 557-580 23-46 (89)
95 3i00_A HIP-I, huntingtin-inter 29.6 2.6E+02 0.009 26.6 9.4 16 935-950 104-119 (120)
96 2pnv_A Small conductance calci 29.5 50 0.0017 26.4 3.7 27 397-423 13-39 (43)
97 3qne_A Seryl-tRNA synthetase, 29.4 73 0.0025 37.0 6.6 36 857-892 33-68 (485)
98 1m1j_A Fibrinogen alpha subuni 28.7 7.4E+02 0.025 28.7 15.5 24 457-480 56-79 (491)
99 2dq0_A Seryl-tRNA synthetase; 27.8 1.4E+02 0.0047 34.3 8.5 36 857-892 31-66 (455)
100 2dq0_A Seryl-tRNA synthetase; 26.5 1.4E+02 0.0047 34.2 8.2 71 406-490 30-100 (455)
101 1t6f_A Geminin; coiled-coil, c 26.4 1.1E+02 0.0039 23.6 4.9 22 436-457 12-33 (37)
102 2wt7_B Transcription factor MA 26.1 2.4E+02 0.0083 25.7 8.1 58 860-921 31-88 (90)
103 2yy0_A C-MYC-binding protein; 25.7 88 0.003 25.8 4.7 34 340-387 17-50 (53)
104 1wle_A Seryl-tRNA synthetase; 25.7 2.2E+02 0.0074 33.2 9.7 35 858-892 71-105 (501)
105 3qne_A Seryl-tRNA synthetase, 25.6 1.6E+02 0.0056 34.1 8.6 71 406-490 32-102 (485)
106 3efg_A Protein SLYX homolog; x 25.3 1.8E+02 0.0062 25.7 7.0 52 553-608 11-62 (78)
107 3s84_A Apolipoprotein A-IV; fo 25.2 6.4E+02 0.022 26.8 25.8 10 570-579 176-185 (273)
108 1x8y_A Lamin A/C; structural p 25.1 1.3E+02 0.0046 26.7 6.2 48 904-951 12-63 (86)
109 3b5n_B Protein SSO1; snare com 24.8 68 0.0023 27.3 4.1 35 922-957 2-36 (69)
110 3uul_A Utrophin; spectrin repe 24.7 3.6E+02 0.012 23.7 9.8 75 866-940 38-116 (118)
111 4etp_A Kinesin-like protein KA 24.3 1.5E+02 0.0053 33.3 8.0 35 866-900 5-39 (403)
112 1jth_B Syntaxin 1A; coiled-coi 23.9 71 0.0024 27.7 4.1 35 922-957 2-36 (77)
113 1wle_A Seryl-tRNA synthetase; 23.6 3.9E+02 0.013 31.0 11.3 23 468-490 125-147 (501)
114 1gd2_E Transcription factor PA 22.9 1E+02 0.0035 26.9 4.8 16 864-879 29-44 (70)
115 4gkw_A Spindle assembly abnorm 22.7 5.4E+02 0.019 25.1 18.3 115 648-773 21-138 (167)
116 3he5_B Synzip2; heterodimeric 22.7 2.1E+02 0.0071 22.9 6.0 36 447-482 12-47 (52)
117 2ic6_A Nucleocapsid protein; h 22.5 2.8E+02 0.0095 24.8 7.5 68 341-426 4-71 (78)
118 1go4_E MAD1 (mitotic arrest de 22.2 3.3E+02 0.011 25.3 8.3 29 553-581 16-44 (100)
119 2b9c_A Striated-muscle alpha t 22.2 5.6E+02 0.019 25.0 16.3 81 553-648 42-122 (147)
120 3rkg_A Magnesium transporter M 22.1 5.1E+02 0.017 27.6 11.0 69 349-424 123-191 (261)
121 3s84_A Apolipoprotein A-IV; fo 21.7 7.4E+02 0.025 26.3 30.7 33 609-641 132-168 (273)
122 1n7s_B Syntaxin 1A; neuronal s 21.1 90 0.0031 26.4 4.1 36 921-957 3-38 (68)
123 2ovc_A Potassium voltage-gated 21.1 55 0.0019 24.9 2.3 24 902-925 10-33 (33)
124 1l8d_A DNA double-strand break 21.0 4.6E+02 0.016 23.6 12.4 25 367-391 21-45 (112)
125 3htk_A Structural maintenance 20.8 3.4E+02 0.012 22.0 7.9 60 623-693 1-60 (60)
126 2xdj_A Uncharacterized protein 20.7 4E+02 0.014 23.8 8.3 19 879-897 28-46 (83)
127 1go4_E MAD1 (mitotic arrest de 20.6 3.8E+02 0.013 24.9 8.4 32 865-896 13-44 (100)
128 3cl3_D NF-kappa-B essential mo 20.4 2.8E+02 0.0095 26.9 7.6 56 649-704 6-65 (130)
129 1t2k_D Cyclic-AMP-dependent tr 20.2 2.6E+02 0.0089 23.1 6.6 34 865-898 23-56 (61)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.19 E-value=0.0076 Score=60.76 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 002095 411 TLERKVYALTKERD 424 (967)
Q Consensus 411 aLErKlq~L~KErD 424 (967)
++.+|+..+..+.+
T Consensus 3 ~~~~~~~~l~~~~~ 16 (284)
T 1c1g_A 3 AIKKKMQMLKLDKE 16 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHH
Confidence 34444444444444
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.98 E-value=0.019 Score=57.78 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLK 390 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~ 390 (967)
|+.|++.|..|...+.....++..+..+++.|......+...+..+.
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 47 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQ 47 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776655555555555555555555554444433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.81 E-value=4.2e-05 Score=96.69 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 002095 339 DSVCELEKLKREMKMMETALQGA 361 (967)
Q Consensus 339 ~~~~e~~kl~~~~~~~~~~l~~~ 361 (967)
....|+..|.+++..+...|...
T Consensus 854 ~~~~El~~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 854 RQEEEMQAKDEELQRTKERQQKA 876 (1184)
T ss_dssp THHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666655543
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.66 E-value=8.7e-05 Score=93.83 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002095 467 QIRKLRAQIRELEEEKKGLVT 487 (967)
Q Consensus 467 iIKKLRakikElEee~k~Lk~ 487 (967)
.++.|+.++..++.++..+..
T Consensus 879 ~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 879 ELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.76 E-value=0.54 Score=49.78 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHH
Q 002095 553 ELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAI 632 (967)
Q Consensus 553 ~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtL 632 (967)
.++..+.++.++.+.+...+..+...+............++...+..+...+..+..+-+++..+++ .+||..|+.+
T Consensus 108 ~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~---~~lL~~Yeri 184 (256)
T 3na7_A 108 QANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTE---PKIYSFYERI 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 3455555555555566666777777777776666777778888888888888888888889988887 5899999887
Q ss_pred HHH
Q 002095 633 QET 635 (967)
Q Consensus 633 Q~q 635 (967)
...
T Consensus 185 r~~ 187 (256)
T 3na7_A 185 RRW 187 (256)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.46 E-value=0.22 Score=50.29 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHH
Q 002095 563 ERETMLVQALEELRQTLSRTEQQAVF---REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARR 639 (967)
Q Consensus 563 ere~~L~qqIedLRe~L~Raeq~a~~---rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asq 639 (967)
+++..|..++.+++.+|....+.+.+ .--++..-++.++..+.++..++--|. ..--.|=+++-.||+++..=
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~----~~k~~Leke~~~LQa~L~qE 81 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILE----NSKSQTDKDYYQLQAILEAE 81 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888654433332 222333333333333333333333331 22234567899999999999
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 002095 640 AEAWAAVER---SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLR----AEQTQLTKSLEKE 706 (967)
Q Consensus 640 senWe~iE~---sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr----~E~~~L~~qLE~E 706 (967)
..+|....- -|..|+..++..++....++..+......+..++..+|-+.+++. .++..|+..++.+
T Consensus 82 r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 988877664 677888888888888888888777777777778888887777665 5566666555543
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.97 E-value=1.8 Score=44.56 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CcCchHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVP-------ESTRPLLRQIEAIQETTARRA 640 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvs-------eATrPLLRQIEtLQ~q~asqs 640 (967)
+++.+.+|+..|.-=.+.....|.+|..++..++.++..+..++..|..-+- .+..-...+|..||..+..-.
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444444455555555555555555555555544433111 111111224555555444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 641 EAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISC 691 (967)
Q Consensus 641 enWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~ 691 (967)
..-.+|..+|.++|-.-+...+.+|.+...+.++..+++.+-+.+..
T Consensus 102 ----~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~al 148 (189)
T 2v71_A 102 ----AIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAF 148 (189)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666665555555554444444444443
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.86 E-value=1.7 Score=45.95 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002095 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL-- 419 (967)
Q Consensus 342 ~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L-- 419 (967)
.+|..+-.+|..+...+...-..+..+..+++.|......++..+..+...- ..++.--+.+..||...+.++...
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~--~~~e~~i~~~~~ri~~~~~~l~~v~~ 88 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV--SKNEQTLQDTNAKIASIQKKMSEIKS 88 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3555555566666655555455555666666677766666666666666643 233334455566777777666432
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 002095 420 TKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (967)
Q Consensus 420 ~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRak 474 (967)
.||.++|.+++. .+...+..-.+.|..+|+.=+.+....-.....+..+++.
T Consensus 89 ~kE~~aL~kEie---~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 89 ERELRSLNIEED---IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp SSHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233343433332 2233444445555555555555444333333333333333
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.86 E-value=1.7 Score=43.43 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHH
Q 002095 578 TLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRA 640 (967)
Q Consensus 578 ~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqs 640 (967)
.|...+..+..|++.+...|..|..++.++++|++.+.-+|. +|-+.|..|...+....
T Consensus 60 sLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~----kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 60 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT----KLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 366778888899999999999999999999999999966443 34444544444444333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.67 E-value=2 Score=42.91 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 600 LQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (967)
Q Consensus 600 Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE 647 (967)
++.-|+-++.|++.+-+ +|-.|...+.....|+..+|
T Consensus 26 ~E~dLEraEERae~aE~-----------k~~eLEeeL~~v~~nlKsLE 62 (155)
T 2efr_A 26 LKKLLERAEERAELSEG-----------KSAELEEELKTVTNNLKSLE 62 (155)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhccch
Confidence 55566666666665544 45555666665555555544
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.51 E-value=5.1 Score=55.88 Aligned_cols=89 Identities=11% Similarity=0.168 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 002095 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEG 729 (967)
Q Consensus 650 L~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~ 729 (967)
+..+|+.++.+++.+..+-..++.++..+..++..|..+++.+..+...|+.+++....|+. +|..=+.-|.+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~-------rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD-------RSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhh
Confidence 33444555555555555555556666666666777777777777777777766665443322 22222233334
Q ss_pred HHHHHHHHHHHHHHHH
Q 002095 730 RANQLEEEIKELRRKH 745 (967)
Q Consensus 730 r~~~LEeeL~eLr~k~ 745 (967)
...+..+.+..++..+
T Consensus 2085 Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2085 ERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 4444555555554444
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.70 E-value=3.3 Score=42.54 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 552 AELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRY 604 (967)
Q Consensus 552 ~~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RL 604 (967)
.+++++...+..+...|...++.+|.++......+......|..+|..|...+
T Consensus 52 ~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 52 VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677778888888888888776666555555555555544333
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.00 E-value=1 Score=43.23 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002095 639 RAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYL 718 (967)
Q Consensus 639 qsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~ 718 (967)
+.-||..+|.-+..|+.++..........-+..+..+.+++..+..|+.++..++.....|...|..-..+.
T Consensus 2 a~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~-------- 73 (129)
T 3tnu_B 2 ANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG-------- 73 (129)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------
Confidence 456899999999999999988766555555566777888888888899999888888777777765433221
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 719 AAKEEADTQEGRANQLEEEIKELRRKHKQELQEA 752 (967)
Q Consensus 719 aakee~~~le~r~~~LEeeL~eLr~k~~~elqea 752 (967)
..++...+..+..|+.+|..+|.+...++++.
T Consensus 74 --~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 74 --ELALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 13445566678888999988888876655443
No 14
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.61 E-value=0.97 Score=43.49 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002095 638 RRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEY 717 (967)
Q Consensus 638 sqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~ 717 (967)
.+..||..+|.-+..|+.++..........-+..+..+.+++..+..|+.++..++.....|...|..-..+.
T Consensus 3 ia~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~------- 75 (131)
T 3tnu_A 3 TAEKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY------- 75 (131)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------
Confidence 4567899999999999999988776655555666777778888888888888888877777776665332221
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 718 LAAKEEADTQEGRANQLEEEIKELRRKHKQELQEA 752 (967)
Q Consensus 718 ~aakee~~~le~r~~~LEeeL~eLr~k~~~elqea 752 (967)
..++...+..+..++.+|..+|.+...++++.
T Consensus 76 ---~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 76 ---CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13445566678888899988888876655443
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.26 E-value=3.2 Score=52.53 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=7.7
Q ss_pred cccHHHHHHHHH
Q 002095 338 ADSVCELEKLKR 349 (967)
Q Consensus 338 ~~~~~e~~kl~~ 349 (967)
.+....||+++.
T Consensus 753 ~g~l~~LE~~R~ 764 (1080)
T 2dfs_A 753 AGQVAYLEKIRA 764 (1080)
T ss_dssp TTHHHHHHHHHH
T ss_pred cchhhHHHHHHH
Confidence 355667887754
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.20 E-value=1.9 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 592 MLRRDIEDLQRRYQASERRCEELV 615 (967)
Q Consensus 592 eLR~EIs~Le~RLEeaEsRaEELS 615 (967)
.|...+.+|+.|+++.+.++.+|.
T Consensus 925 ~LE~kl~eLq~rL~~~e~~n~~L~ 948 (1080)
T 2dfs_A 925 GLENKIMQLQRKIDEQNKEYKSLL 948 (1080)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444443
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.83 E-value=45 Score=46.98 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=19.1
Q ss_pred hccchhHHHHHHHhHHHHHHHHHHHH
Q 002095 925 MGERDEELEELRADIMDLKEMYREQV 950 (967)
Q Consensus 925 LGEKsEeVEELraDV~DVKeMYR~QI 950 (967)
+-+|.++.++.+.+|....+-||---
T Consensus 2380 I~~kl~~a~~te~~I~~~R~~YrpvA 2405 (3245)
T 3vkg_A 2380 IALKVEETETVMQEISEVSALYNPMA 2405 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34666777888888888888887644
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.64 E-value=19 Score=34.08 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 557 RLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDI 597 (967)
Q Consensus 557 ~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EI 597 (967)
+..++..+..+|...++.|+.++......+...-..|..|+
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El 44 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDL 44 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566777777777777766544444333333333
No 19
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.63 E-value=11 Score=36.02 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSs 616 (967)
-.+.+..|+..|.....+...+..+|++||..|.++|+++....|.|..
T Consensus 51 CNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 51 ANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3357778888888776666777888888888888888888887777764
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.75 E-value=29 Score=35.11 Aligned_cols=110 Identities=22% Similarity=0.235 Sum_probs=72.3
Q ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 620 ESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQL 699 (967)
Q Consensus 620 eATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L 699 (967)
+-..-|=||++-++.-|..-+++-..+=++- +++.+.+..+.. .++++..++..|+..-..+..++..|
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~----tEl~k~~~~~E~-------~~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSH----TEMSKSISQLES-------LNRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999998888777655443322 344444433333 34555566777888888888888999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002095 700 TKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQ 747 (967)
Q Consensus 700 ~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~~~ 747 (967)
+.+|+.||... ..+.+.+..+++|+..|+.+++.++..+.+
T Consensus 75 Qa~L~qEr~~r-------~q~se~~~elq~ri~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 75 QAILEAERRDR-------GHDSEMIGDLQARITSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887322 233455677888888888888887776644
No 21
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.30 E-value=6.7 Score=37.39 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=57.5
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 002095 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA-AILPGIQAELDALRRRHSAALELMGERDEELEELRA 937 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~-~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELra 937 (967)
-+.++.++...|+-+..-+.+-..-+.=+|.|+..++..++.. +++.+|+.++..|+ +.|-+.+++||.||.
T Consensus 27 T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Ln-------q~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 27 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLN-------HKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 3557788888888888888888888899999998877766543 23444555555554 556677889999999
Q ss_pred hHHHHH
Q 002095 938 DIMDLK 943 (967)
Q Consensus 938 DV~DVK 943 (967)
+.++++
T Consensus 100 ~~~~~~ 105 (121)
T 3mq7_A 100 ENQVLS 105 (121)
T ss_dssp HHHHHH
T ss_pred hchhhh
Confidence 888775
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.55 E-value=19 Score=42.10 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISC 691 (967)
Q Consensus 650 L~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~ 691 (967)
|..+|..++.+++.-..+.+.|+.-+++...+|..||-.+..
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455555555555666666666643
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.41 E-value=8 Score=36.71 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHh
Q 002095 863 EGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA----AILPGIQAELDALRRRHSAALELMGERDEELEELRAD 938 (967)
Q Consensus 863 EGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~----~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraD 938 (967)
++++..|+.+|..+...+..+.-||-.+...++.++.+. .....++.++..|..=.+.+--.--+-.-+++-|+.+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555554332 2223334444333333332222222223468888999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002095 939 IMDLKEMYREQVNLLVNKIQ 958 (967)
Q Consensus 939 V~DVKeMYR~QIdeLlkQi~ 958 (967)
|.=+|..|.+-|..|-.||+
T Consensus 99 l~FLKk~heeEl~eLq~qi~ 118 (119)
T 3ol1_A 99 IAFLKKLHEEEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999988877755543
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.71 E-value=24 Score=33.66 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=69.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHH---HHHHHHHHhc
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGI----QAELDALRR---RHSAALELMG 926 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~L----e~eleeLqq---RYeTlLELLG 926 (967)
+-...++.++-++..++..+...+..|..|....+.|..+...+...+..-..+ +..+..|.. ..+.-|.=+-
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888999999999999999999999999999998887776554332221 111111111 1112222233
Q ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 002095 927 ERDEELEELRADIMDLKEMYREQVNLLVNKIQVMGSSM 964 (967)
Q Consensus 927 EKsEeVEELraDV~DVKeMYR~QIdeLlkQi~~L~~~~ 964 (967)
++-|..++--.++..-|.=....|+.|=++|+.+..+.
T Consensus 90 ~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 90 KRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455555555556677777777777766543
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.48 E-value=5.4 Score=46.06 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQAVF 588 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~ 588 (967)
++.++.+++..+...+++...
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~ 474 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQ 474 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556666555554444333
No 26
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.55 E-value=8.6 Score=34.72 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=41.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e 900 (967)
+....++.++-++..++..+.+.+..|..|....+.|+.+...|...
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888999999999999999999999999999999888887755
No 27
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.50 E-value=36 Score=38.20 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 668 ERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (967)
Q Consensus 668 Er~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er 707 (967)
-+.+++++.++...+..++.|.+......-.|+..|+++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 438 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 3445556666666666777777776667777888888654
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.22 E-value=40 Score=31.84 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=10.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 002095 727 QEGRANQLEEEIKELRRKHKQE 748 (967)
Q Consensus 727 le~r~~~LEeeL~eLr~k~~~e 748 (967)
++.++..|.++|.=++.-|..+
T Consensus 88 LE~~iesL~eEl~FLKk~heeE 109 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLHEEE 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444443
No 29
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.82 E-value=42 Score=31.80 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDL 600 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~L 600 (967)
....+.|+..++..+=++.++.|.+|. |-..|
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~-EKe~L 106 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELD-EKESL 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 335788999999999999999888886 33333
No 30
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=79.60 E-value=50 Score=32.52 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhH
Q 002095 651 NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGR 730 (967)
Q Consensus 651 ~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r 730 (967)
+.||.++++.++...+.-..+..+......++..|+.++..++.-....-...+..-.++.-...++..+...+...+.+
T Consensus 23 ~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k 102 (147)
T 2b9c_A 23 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGK 102 (147)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777776665556666666667778888888876664444333333322112222222333333444444444
Q ss_pred HHHHHHHHHH
Q 002095 731 ANQLEEEIKE 740 (967)
Q Consensus 731 ~~~LEeeL~e 740 (967)
+..|+.+|..
T Consensus 103 ~~eLEeeL~~ 112 (147)
T 2b9c_A 103 CAELEEELKT 112 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=78.59 E-value=41 Score=30.96 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 651 NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKE 706 (967)
Q Consensus 651 ~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~E 706 (967)
-.++..+....+.|..|--.+..++..+..+...++.++.++...+..+...|+..
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666777777777777766666666555543
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.36 E-value=25 Score=41.04 Aligned_cols=107 Identities=9% Similarity=0.221 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 573 EELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNL 652 (967)
Q Consensus 573 edLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~ 652 (967)
..|+..|.+.+..-..+...||+.+.++++....+..-...+ ++.|+..+.... ..+...++
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~--------------~E~Lr~rq~q~~----dNdNtynE 110 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNI--------------MEILRGDFSSAN----NRDNTYNR 110 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------------HHTTSSHHHHHH----HHHHHHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHH--------------HHHHHHHHHhhh----ccchhHHH
Confidence 357777888888888888888888877766555555554444 333333333322 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 653 RLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 653 RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE 704 (967)
--.+|+.+. ..+++++.....+|+.|+.-|..++.++.+|...+.
T Consensus 111 ~S~ELRRrI-------qyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 111 VSEDLRSRI-------EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp TTHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444433 345555555556777788777777777777665554
No 33
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=77.37 E-value=29 Score=30.01 Aligned_cols=66 Identities=8% Similarity=0.147 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 625 LLRQIEAIQETTA-RRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQIS 690 (967)
Q Consensus 625 LLRQIEtLQ~q~a-sqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els 690 (967)
|-.=|..+++||. .+..|+..+|.-+..|+.++......-...-+..+..+.++.-.+..|+.++.
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677774 46678999999999999988876654444433334444444444444444443
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.66 E-value=22 Score=35.43 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=69.0
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHhccchhH
Q 002095 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA-----AILPGIQAELDALRRRHSAALELMGERDEE 931 (967)
Q Consensus 857 A~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~-----~~v~~Le~eleeLqqRYeTlLELLGEKsEe 931 (967)
..+...+.|+..|+.++..-...|..+..+..++..++|+|-+.. .-|..-+.+-..++.|...+=.-++++.-.
T Consensus 51 ~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 51 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777877777777777777777777777777765433 446667777888888888888999999999
Q ss_pred HHHHHHhHHHHHHHH
Q 002095 932 LEELRADIMDLKEMY 946 (967)
Q Consensus 932 VEELraDV~DVKeMY 946 (967)
++-|+.-|.+||.++
T Consensus 131 l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 131 LDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.58 E-value=49 Score=30.30 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (967)
Q Consensus 343 e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KE 422 (967)
+++.|..++..|...=....+.|..+.++.+.|..+...|..+...|. .--..|...-.++.+.+.....+
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~---------~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD---------QEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666555554443344444545555555555555544444333 33466777777777777777777
Q ss_pred HHHHHHHhhh
Q 002095 423 RDTLRREQNK 432 (967)
Q Consensus 423 rD~LKke~~k 432 (967)
++++..+..-
T Consensus 76 ~~Sl~~q~~~ 85 (96)
T 3q8t_A 76 LKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 36
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.57 E-value=49 Score=30.29 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 652 LRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (967)
Q Consensus 652 ~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er 707 (967)
.++..+....+.|..+--.+..++..+..+...++.++..+...+..+..+++...
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667766666666666777777777777777777766666666665433
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.07 E-value=19 Score=32.45 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 002095 549 EARAELESRLREAGERETMLVQALEELRQTLSRTEQQAV----------FREDMLRRDIEDLQRRYQASER 609 (967)
Q Consensus 549 Ea~~~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~----------~rEeeLR~EIs~Le~RLEeaEs 609 (967)
+....|+.++..+-+.+..|+..|++|+++-....+... ..-..|+.|+..++.|++.+=.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667666666777777777776554332221 2334566666666666665443
No 38
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.51 E-value=45 Score=29.37 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (967)
Q Consensus 650 L~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE 704 (967)
+..|+..++...+.+..+--.+..++.....+...++.++..+...+..|..+|+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666666665555555544444
No 39
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=73.99 E-value=69 Score=31.28 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=4.3
Q ss_pred HHHhhHHHHH
Q 002095 438 ALLKEKDEII 447 (967)
Q Consensus 438 a~LkEKDE~I 447 (967)
..|+++.+.+
T Consensus 96 ~~L~e~~e~~ 105 (155)
T 2oto_A 96 KELEEKKEAL 105 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.97 E-value=54 Score=30.01 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL 419 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L 419 (967)
|+.+++.|.+|....+.|...+.....++-.+...+.++-.+|..|+++- .-++.-.+.|..++..+..++...
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi--q~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL--KGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999888865555555566666667777777777666654 223333444555555555555443
No 41
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=72.58 E-value=68 Score=30.56 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAE 712 (967)
Q Consensus 669 r~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~ 712 (967)
..+.+++.........++..+..+..+...|..+|+.++..+.+
T Consensus 23 ~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e 66 (129)
T 2fxo_A 23 TRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLAD 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555666778888888888999999999887755443
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.20 E-value=25 Score=31.05 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 345 EKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYA 418 (967)
Q Consensus 345 ~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~ 418 (967)
+.+++.|..|..-.+.|.-.+.....++-.....+.++-.+|..|+++- .-++.-.+.+.+|+..+..||..
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi--q~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL--KGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887744444444444444455555555555555543 22333344445555555555543
No 43
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.98 E-value=64 Score=29.64 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRK 392 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~ 392 (967)
|+.+++.|.+|....+.|...+.....++-.+...+.++-.+|..|+++
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk 52 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQ 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7888888998888888875444444445555555555555555555554
No 44
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=70.15 E-value=15 Score=32.26 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=43.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAI 903 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~ 903 (967)
.|+..|+-+|-|+..|+..+.=-.+--..|++||+.|.-+|.=|+.+...
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 78889999999999999999887888889999999999999988866443
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.14 E-value=18 Score=34.58 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhc----cchhHHHHHHHhHHHHHHHHHHHHH
Q 002095 904 LPGIQAELDALRRRHSAALELMG----ERDEELEELRADIMDLKEMYREQVN 951 (967)
Q Consensus 904 v~~Le~eleeLqqRYeTlLELLG----EKsEeVEELraDV~DVKeMYR~QId 951 (967)
...|+..+.+++.||...|.-|. ....++..++.|++..-.=|..+.+
T Consensus 61 ~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 61 KASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899988887554 4445555666666655555555443
No 46
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.55 E-value=95 Score=34.76 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 570 QALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (967)
Q Consensus 570 qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELS 615 (967)
..|--|...|+....++..|..+|.++|..|..+|+++++..+++.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 425 HTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777776666777899999999999999999988887763
No 47
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.10 E-value=77 Score=29.01 Aligned_cols=47 Identities=28% Similarity=0.363 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (967)
Q Consensus 854 ~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e 900 (967)
.+...|+.+.-+-+.+..+|..|++.+..+..||..+..+.+.+...
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 56777777777777778888888888888888888777766666543
No 48
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.51 E-value=1.1e+02 Score=30.54 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 553 ELESRLREAGERETMLVQALEELRQTLS 580 (967)
Q Consensus 553 ~Le~~lkEaeere~~L~qqIedLRe~L~ 580 (967)
.|+.++++.......++.++.+|+.-+.
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777778888888876543
No 49
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.13 E-value=37 Score=32.32 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHhHHHHHHHHHHHHH
Q 002095 904 LPGIQAELDALRRRHSAALELMGER----DEELEELRADIMDLKEMYREQVN 951 (967)
Q Consensus 904 v~~Le~eleeLqqRYeTlLELLGEK----sEeVEELraDV~DVKeMYR~QId 951 (967)
...|+..+.+++.||...|.-|..+ ..++..++.|++..-.=|..+.+
T Consensus 59 ~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 59 CANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999888766544 34444566666555555554443
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.15 E-value=46 Score=29.97 Aligned_cols=67 Identities=9% Similarity=0.141 Sum_probs=47.9
Q ss_pred HHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHH
Q 002095 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRA----EAAILPGIQAELDALRRRHSAALEL 924 (967)
Q Consensus 858 ~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~----e~~~v~~Le~eleeLqqRYeTlLEL 924 (967)
.|-++|.-|..+-+.|.-|+-.-+.|.++-..|..++++++. ...++..|+.+...-+.|..++|--
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666677777777777777777777777777665 3345677888888889998888754
No 51
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=64.79 E-value=17 Score=32.50 Aligned_cols=55 Identities=27% Similarity=0.454 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC---------cCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 594 RRDIEDLQRRYQASERRCEELVTQVPE---------STRPLLRQIEAIQETTARRAEAWAAVER 648 (967)
Q Consensus 594 R~EIs~Le~RLEeaEsRaEELSssvse---------ATrPLLRQIEtLQ~q~asqsenWe~iE~ 648 (967)
++|+..|..+++.+|.+..++-..+.+ -...|+.++..++..+...-+-|.-+|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666554322 2568999999999999999999987764
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=63.37 E-value=63 Score=36.44 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 646 VERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQIS 690 (967)
Q Consensus 646 iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els 690 (967)
+=..|..||..++.+.+.-..+.+.|+.-++....+|..||..+.
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555665555555555555666666666666666666663
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.07 E-value=1.1e+02 Score=30.51 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 625 LLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTK 701 (967)
Q Consensus 625 LLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~ 701 (967)
+...|..|+..++. |..||.+++..+..-...--.++..+..+..+++.++..+..+..+...|-.
T Consensus 66 ~~~~I~~L~~El~~-----------l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 66 LLNTLAILQKELKS-----------KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655543 4445555554444333333345555555666666666666666655555443
No 54
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.65 E-value=9.5 Score=37.32 Aligned_cols=88 Identities=22% Similarity=0.306 Sum_probs=50.6
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 002095 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA-----AILPGIQAELDALRRRHSAALELMGERDEELE 933 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~-----~~v~~Le~eleeLqqRYeTlLELLGEKsEeVE 933 (967)
+.-.+.|+..|+..+..-...|..+..+..++-.++|+|-+.. .-|..-+.+-..++.|..-+=.-+++|...++
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~ 120 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLD 120 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566666666666655566666666666666666654332 44556677778888888888889999999999
Q ss_pred HHHHhHHHHHHHH
Q 002095 934 ELRADIMDLKEMY 946 (967)
Q Consensus 934 ELraDV~DVKeMY 946 (967)
-|+.-|.+||.++
T Consensus 121 ~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 121 TLTLQLKNLKKVM 133 (135)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.18 E-value=91 Score=28.36 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002095 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNK 432 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k 432 (967)
+--+.|-.|+.+|..|..++..+..+. ...+..-|-.-|..|-+++..++.++..|-.+..+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~~----~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQG----KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888877643 23567778888999999999999999877666554
No 56
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.03 E-value=37 Score=30.52 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=23.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 002095 363 RQAQAKADEIAKMMNENEHLKAVIEDLKRK 392 (967)
Q Consensus 363 r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~ 392 (967)
+|+.....+.+.|.-+.++++..++.++.+
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~K 36 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREK 36 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455678888999999999999888876
No 57
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.02 E-value=1.1e+02 Score=30.36 Aligned_cols=60 Identities=12% Similarity=0.260 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002095 682 INVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKEL 741 (967)
Q Consensus 682 i~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eL 741 (967)
+..|+.++..++.++.+|...|..-..-.....+++.+..-++..++.++..|+.+-..|
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666665555543333333344455555555455555544444444433
No 58
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=58.65 E-value=88 Score=28.94 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 568 LVQALEELRQTLSRTEQQA---VFREDMLRRDIEDLQRRYQASERRC 611 (967)
Q Consensus 568 L~qqIedLRe~L~Raeq~a---~~rEeeLR~EIs~Le~RLEeaEsRa 611 (967)
-.+.+..|+..|....... ..+..+|++||..|.++|+++....
T Consensus 44 CNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 44 CNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888765443 4678899999999999999988544
No 59
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=58.45 E-value=1.1e+02 Score=27.99 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=28.2
Q ss_pred HhHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002095 453 EGEELSKKQA-----AQEAQIRKLRAQIRELEEEKKGLVTKLQVE 492 (967)
Q Consensus 453 EGEKLSKkEL-----q~sniIKKLRakikElEee~k~Lk~KlE~e 492 (967)
||+|+|..+| .+++.+..||.+...-++-+..|..|+...
T Consensus 14 e~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 14 ESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888887765 456667777777777777777777666643
No 60
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.36 E-value=1.1e+02 Score=27.36 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (967)
Q Consensus 671 ~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er 707 (967)
++.++..+...-..++.++..++....+++...+.|.
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~ 41 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 41 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555555555555555544
No 61
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=56.16 E-value=1.4e+02 Score=28.32 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 002095 628 QIEAIQETTARR 639 (967)
Q Consensus 628 QIEtLQ~q~asq 639 (967)
+|..|+.++..+
T Consensus 25 ei~~L~~~L~~A 36 (110)
T 2v4h_A 25 QLEDLRQQLQQA 36 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 676666665553
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.80 E-value=2.3e+02 Score=32.06 Aligned_cols=54 Identities=9% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 645 AVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (967)
Q Consensus 645 ~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~ 705 (967)
..+..+++=..+|+.+... ++++.......|+.|..-|..++.++.+|...++.
T Consensus 106 dndn~~~e~s~eLe~~i~~-------lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 106 NNDNTFKQINEDLRSRIEI-------LRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred cchHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555565555544 33334443346777777777777777777666654
No 63
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.18 E-value=1.5e+02 Score=27.52 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002095 684 VLEAQISCLRAEQTQLTKSL 703 (967)
Q Consensus 684 ~LE~els~lr~E~~~L~~qL 703 (967)
.+|.....+..++..|...|
T Consensus 44 ~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555
No 64
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.81 E-value=78 Score=30.77 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 002095 367 AKADEIAKMMNENEHLKAVIEDL 389 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l 389 (967)
+.+++.-++...++.|..+++.+
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~ 87 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK 87 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=49.20 E-value=99 Score=29.27 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002095 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKM 375 (967)
Q Consensus 342 ~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L 375 (967)
.+++-|..++...+.+|....++...+..+++.+
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~ 57 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH 57 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777776666666664444433333344443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.40 E-value=3.1e+02 Score=30.72 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 002095 443 KDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREL 478 (967)
Q Consensus 443 KDE~IaqLmEEGEKLSKkELq~sniIKKLRakikEl 478 (967)
.-+.|..|.+|.++|-|.-.+....|.+-+++.+++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 344555555555555554444444444444444433
No 67
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.33 E-value=1.6e+02 Score=27.25 Aligned_cols=24 Identities=4% Similarity=0.127 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 002095 868 SYMSRLASMESIRDSLAEELVKMT 891 (967)
Q Consensus 868 ~Lq~ELarLes~Rd~L~eELVrLt 891 (967)
.++.+|.+|+........|+.+|+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444444444444444443
No 68
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.29 E-value=1.7e+02 Score=26.53 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLT 700 (967)
Q Consensus 670 ~~~ekl~~~~~ri~~LE~els~lr~E~~~L~ 700 (967)
.+|+++..--.++..||.++..+..++..++
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666777788888877766665544
No 69
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=46.24 E-value=90 Score=29.06 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002095 343 ELEKLKREMKMMETALQGAARQAQAKADE-----IAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (967)
Q Consensus 343 e~~kl~~~~~~~~~~l~~~~r~~~~k~~~-----~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq 417 (967)
+-++|.++|+..=.-+. +-.|++.+++ -=.|+....+|..+..+|+. +...|..||-+|+.++.
T Consensus 7 ~eeFl~KdFSe~YE~~h--~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~---------~~~~~~~~v~eLe~eve 75 (104)
T 3s9g_A 7 GSEFLQRDFSETYERYH--TESLQNMSKQELIKEYLELEKSLSRMEDENNRLRL---------ESKRLDARVRELELELD 75 (104)
T ss_dssp -------CCHHHHHHHH--HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhccchhhHHHHHHHHH
Confidence 44566666665433222 3334443332 22233333344434433333 34566789999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002095 418 ALTKERDTLRREQN 431 (967)
Q Consensus 418 ~L~KErD~LKke~~ 431 (967)
.|..|+-.|+.+..
T Consensus 76 rL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 76 RLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877654
No 70
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=43.08 E-value=1.3e+02 Score=26.43 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHH
Q 002095 904 LPGIQAELDALRRRHSAALELMGERDEELEELRADIMDL 942 (967)
Q Consensus 904 v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DV 942 (967)
...++..+.+|+.||+.+..+..++-..+++--.++++.
T Consensus 80 ~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q~~ 118 (119)
T 3uun_A 80 ETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQNQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999888877765555543
No 71
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.52 E-value=46 Score=29.37 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=42.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRA 899 (967)
Q Consensus 853 S~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~ 899 (967)
-.|+..|+.++-|+......|..++..-+...++|-.|..+++.++.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 37999999999999999999999999999999999999999988864
No 72
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.08 E-value=41 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002095 864 GELASYMSRLASMESIRDSLAEELVKM 890 (967)
Q Consensus 864 GEla~Lq~ELarLes~Rd~L~eELVrL 890 (967)
||++.|+++|+.|..+...|.=||..|
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887777666666665554
No 73
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=42.08 E-value=1.7e+02 Score=27.11 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=40.0
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHH
Q 002095 860 RQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA----AILPGIQAELDALRRRHSAA 921 (967)
Q Consensus 860 RrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~----~~v~~Le~eleeLqqRYeTl 921 (967)
+.++.++...++-+.+-+.+-.--+.=+|.|+..++.-++.. +++.+|+.++..|++..+-+
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777788888887666554432 34555555555555544433
No 74
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=41.41 E-value=24 Score=34.40 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHH
Q 002095 889 KMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDL 942 (967)
Q Consensus 889 rLt~EnEel~~e~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DV 942 (967)
.|..+....+..+..++.|++++++|+.++..++..|-.+. ++..|=.||.++
T Consensus 2 ~L~~~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~LP~~~-em~~LL~~i~~~ 54 (147)
T 2rjz_A 2 SLKQQFSTKAFQAANLEAYKAQMKEMEESFGALLRQLPSDT-EVPGLLEDITRT 54 (147)
T ss_dssp CHHHHHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTTTGGG-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCChh-HHHHHHHHHHHH
Confidence 35556667777788899999999999999999999999555 455665666443
No 75
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.31 E-value=4.1e+02 Score=30.76 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 642 AWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISC 691 (967)
Q Consensus 642 nWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~ 691 (967)
....+=..|..||..++.+.+.-..+.+.|+.-++....+|..||..+..
T Consensus 108 ~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 108 NYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445666666666666666666667777777777777777766643
No 76
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=40.28 E-value=2.5e+02 Score=33.31 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAE--LETLREEYHQRVATLERKVYALTK 421 (967)
Q Consensus 344 ~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~--~~~L~eEy~qRI~aLErKlq~L~K 421 (967)
|..-.+....++..+.-+-..|-.+.++++.=...++....+...|+.+...-+ ++.=...|-++|..|..|+. +
T Consensus 461 l~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme---~ 537 (592)
T 1f5n_A 461 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME---N 537 (592)
T ss_dssp HHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 422 ERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEE 481 (967)
Q Consensus 422 ErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee 481 (967)
||..+.++ ....|.-|=..=+.|+.|| ..+.++.|..+|.++.+.
T Consensus 538 ~~~~~~~e------~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 538 DRVQLLKE------QERTLALKLQEQEQLLKEG---------FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHT---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHh
No 77
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.02 E-value=1.4e+02 Score=26.78 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002095 593 LRRDIEDLQRRYQASERRCEELV 615 (967)
Q Consensus 593 LR~EIs~Le~RLEeaEsRaEELS 615 (967)
.|..+-.++.+|++++.|+++|-
T Consensus 36 vr~~ni~~eskL~eae~rn~eL~ 58 (81)
T 1wt6_A 36 IRTDNQNFASQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667778888888888873
No 78
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.78 E-value=2e+02 Score=26.51 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 002095 650 LNLRLQEAEAKAA 662 (967)
Q Consensus 650 L~~RL~elE~kl~ 662 (967)
|..+|..++..+.
T Consensus 7 L~~~L~~aEeaL~ 19 (94)
T 3jsv_C 7 LRQQLQQAEEALV 19 (94)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 79
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.03 E-value=1.2e+02 Score=25.04 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 002095 351 MKMMETALQGAARQ---AQAKADEIAKMMNENEHLKAVIEDLKRK 392 (967)
Q Consensus 351 ~~~~~~~l~~~~r~---~~~k~~~~a~L~e~n~~L~~~~e~l~~~ 392 (967)
|+-=+.+...+.|. +..+..+++.|..+|..|+.++..|...
T Consensus 7 ~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 7 MKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333 5666777888888888888888776653
No 80
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.99 E-value=1.9e+02 Score=26.13 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 862 KEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLR 898 (967)
Q Consensus 862 rEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~ 898 (967)
.+.++..+..+|..|...+..+..+|-.+......+.
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555555555555555544443
No 81
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.58 E-value=2.1e+02 Score=25.13 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 555 ESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (967)
Q Consensus 555 e~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELS 615 (967)
-.++++++.+...|..+|..|+..|+....+......+|+.=+..|-.|+.++----+.|+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456666666667888899999999888877777777888888888888887655555554
No 82
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.41 E-value=2.3e+02 Score=25.27 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 555 ESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (967)
Q Consensus 555 e~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELS 615 (967)
-.++++++.+...|..+|..|+..|+....+......+|+.=+..|-.|+.++----+.|+
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456666666667888888999999888777777777788777777788876654444443
No 83
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.30 E-value=1.3e+02 Score=28.70 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 564 RETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERR 610 (967)
Q Consensus 564 re~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsR 610 (967)
.+..|+..|+.||..|++....+......|++-|..|+.-|...+.-
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999998888888888888888887777754433
No 84
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.19 E-value=2.4e+02 Score=25.25 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 559 REAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCE 612 (967)
Q Consensus 559 kEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaE 612 (967)
++++.+...|.+...+|...+..++ -+-..|-....+|+.++.+++.|.+
T Consensus 38 kele~~~~~l~~ek~~L~~ql~eaE----e~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 38 KELEEQNVTLLEQKNDLFGSMKQLE----DKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444445555555555533332 2333455555566667766666654
No 85
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.18 E-value=2.1e+02 Score=26.80 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=21.1
Q ss_pred HhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLR 898 (967)
Q Consensus 859 LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~ 898 (967)
++++...+..++.++..+..++..+...+-.+..-.+.++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666655555555544444333
No 86
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=34.50 E-value=1.2e+02 Score=26.88 Aligned_cols=48 Identities=6% Similarity=0.248 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhc----cchhHHHHHHHhHHHHHHHHHHHHH
Q 002095 904 LPGIQAELDALRRRHSAALELMG----ERDEELEELRADIMDLKEMYREQVN 951 (967)
Q Consensus 904 v~~Le~eleeLqqRYeTlLELLG----EKsEeVEELraDV~DVKeMYR~QId 951 (967)
...|+..+.++..||...+.-|. ....++..++.|++..-.=|..+.+
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888776664 3344555666666655555555443
No 87
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.20 E-value=1.6e+02 Score=27.67 Aligned_cols=68 Identities=25% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~ 420 (967)
|..|++|.++|...|..|-- +|| +|...+.+.-..=++++..+ -.--..-+++++.|+..|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~i-ArQ---------KLkdAe~~~E~DPDevNK~t--------l~~R~~~Vsalq~KiaeLK 95 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVT-ARQ---------KLKDAEKAVEVDPDDVNKST--------LQNRRAAVSTLETKLGELK 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 002095 421 KERDTL 426 (967)
Q Consensus 421 KErD~L 426 (967)
+..+.+
T Consensus 96 rqLAd~ 101 (107)
T 2k48_A 96 RQLADL 101 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 88
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.94 E-value=97 Score=25.54 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=25.5
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002095 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKL 897 (967)
Q Consensus 857 A~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel 897 (967)
..++.+..++..|..+-.+|...=..++++|++|-.+++.+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455556666666666666667777777776666654
No 89
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.85 E-value=41 Score=27.77 Aligned_cols=27 Identities=19% Similarity=0.514 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 591 DMLRRDIEDLQRRYQASERRCEELVTQ 617 (967)
Q Consensus 591 eeLR~EIs~Le~RLEeaEsRaEELSss 617 (967)
+-|+.|+.+|+.|+..+..+++|+.+.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777766553
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.82 E-value=3.5e+02 Score=26.45 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002095 684 VLEAQISCLRAEQTQLTKSL 703 (967)
Q Consensus 684 ~LE~els~lr~E~~~L~~qL 703 (967)
..|.+...+..++..|...|
T Consensus 64 ~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 64 KAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.39 E-value=1.3e+02 Score=26.62 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002095 369 ADEIAKMMNENEHLKAVIED 388 (967)
Q Consensus 369 ~~~~a~L~e~n~~L~~~~e~ 388 (967)
.+++.+......+|+.++..
T Consensus 46 Ek~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433
No 92
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=30.98 E-value=1.1e+02 Score=28.79 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHhhHHHH
Q 002095 371 EIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKDEI 446 (967)
Q Consensus 371 ~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~k~----s~~~a~LkEKDE~ 446 (967)
+++-|.=+.|-|++.++++. +-++.+.|.+...||+.+.+|+..... ..+...|+++|+.
T Consensus 24 EKsal~YqVdlLKD~LEe~e----------------E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~L 87 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELE----------------EQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEM 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776432 334455666666677777776655432 3456788999988
Q ss_pred HHH
Q 002095 447 INQ 449 (967)
Q Consensus 447 Iaq 449 (967)
|..
T Consensus 88 I~E 90 (103)
T 4h22_A 88 LEP 90 (103)
T ss_dssp C--
T ss_pred HHH
Confidence 864
No 93
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.76 E-value=2.7e+02 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 680 SRINVLEAQISCLRAEQTQLTKSLEK 705 (967)
Q Consensus 680 ~ri~~LE~els~lr~E~~~L~~qLE~ 705 (967)
.++..+|..+..+...+..|+.+|+.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 94
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.78 E-value=1.3e+02 Score=26.80 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 557 RLREAGERETMLVQALEELRQTLS 580 (967)
Q Consensus 557 ~lkEaeere~~L~qqIedLRe~L~ 580 (967)
.+..+..++..|...|..|...|.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555556666666654
No 95
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.63 E-value=2.6e+02 Score=26.61 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHH
Q 002095 935 LRADIMDLKEMYREQV 950 (967)
Q Consensus 935 LraDV~DVKeMYR~QI 950 (967)
-..-...||++|=.+|
T Consensus 104 ~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 104 NEQRYSKLKEKYSELV 119 (120)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455677777776655
No 96
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.48 E-value=50 Score=26.39 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 397 ELETLREEYHQRVATLERKVYALTKER 423 (967)
Q Consensus 397 ~~~~L~eEy~qRI~aLErKlq~L~KEr 423 (967)
++.+=.+++-.||++||.||..|....
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344446777899999999998876544
No 97
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.43 E-value=73 Score=37.01 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=26.0
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (967)
Q Consensus 857 A~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~ 892 (967)
..|-.++.+...++.++..|.+.|+.+..+|-.++.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455666777788888888888888888877654
No 98
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=28.68 E-value=7.4e+02 Score=28.71 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 002095 457 LSKKQAAQEAQIRKLRAQIRELEE 480 (967)
Q Consensus 457 LSKkELq~sniIKKLRakikElEe 480 (967)
|.|++....+.|-+||..+.++.+
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~ 79 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQN 79 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHh
Confidence 566777777888888877766543
No 99
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.82 E-value=1.4e+02 Score=34.26 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (967)
Q Consensus 857 A~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~ 892 (967)
..|-.++.+...++.++..|.+.|+.+..+|-.+..
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~ 66 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRK 66 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556677777888888888888888888876543
No 100
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.46 E-value=1.4e+02 Score=34.23 Aligned_cols=71 Identities=28% Similarity=0.331 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (967)
Q Consensus 406 ~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~L 485 (967)
+.+|-+|..+...+..+.+.|+.+.+..+. +|.+++..|+... .+-..+|.|+.++++++.++..+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk----------~i~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAV----------EIGKRRKKGEPVD----ELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHTSCCCTH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhcccccHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666766665544332 2333333443211 12233555666666666666555
Q ss_pred HhHHH
Q 002095 486 VTKLQ 490 (967)
Q Consensus 486 k~KlE 490 (967)
..++.
T Consensus 96 ~~~~~ 100 (455)
T 2dq0_A 96 KKKID 100 (455)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 101
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.42 E-value=1.1e+02 Score=23.56 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.7
Q ss_pred HHHHHhhHHHHHHHHHHHhHHh
Q 002095 436 AAALLKEKDEIINQVMAEGEEL 457 (967)
Q Consensus 436 ~~a~LkEKDE~IaqLmEEGEKL 457 (967)
+..-|..||+.|+.|.+|.+-|
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 4456678889999888887765
No 102
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.12 E-value=2.4e+02 Score=25.73 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 002095 860 RQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAA 921 (967)
Q Consensus 860 RrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~~v~~Le~eleeLqqRYeTl 921 (967)
|.+-.-.++.--+..++ .++..|..++..|..+.+.|+.+ ...+..++..+.+||+++
T Consensus 31 RtlKNRgyAq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e---~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 31 RTLKNRGYAQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQE---VSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
No 103
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.75 E-value=88 Score=25.82 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIE 387 (967)
Q Consensus 340 ~~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e 387 (967)
+..+.|+|+.++..|..-+. .|..+++.|++.++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~--------------~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYE--------------AIVEENKKLKAKLA 50 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHh
Confidence 35688888888777655444 56666666666554
No 104
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.74 E-value=2.2e+02 Score=33.15 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002095 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (967)
Q Consensus 858 ~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~ 892 (967)
.|-.++.+...++.++..|.+.|+.+..+|-.++.
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556667777777888888888877776654
No 105
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.60 E-value=1.6e+02 Score=34.12 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (967)
Q Consensus 406 ~qRI~aLErKlq~L~KErD~LKke~~k~s~~~a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~L 485 (967)
+.+|-+|..+...+..+.+.|+.+.+..+. .|.+++..|+... .+...++.|+.++++++.++..+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk----------~i~~~k~~~~~~~----~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQK----------EIGKRFKAKEDAK----DLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHTTCCCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhcCcccHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666766665544332 3444455554321 12223555666666666666666
Q ss_pred HhHHH
Q 002095 486 VTKLQ 490 (967)
Q Consensus 486 k~KlE 490 (967)
..++.
T Consensus 98 ~~~~~ 102 (485)
T 3qne_A 98 DKNLR 102 (485)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 106
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.32 E-value=1.8e+02 Score=25.67 Aligned_cols=52 Identities=29% Similarity=0.266 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 553 ELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASE 608 (967)
Q Consensus 553 ~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaE 608 (967)
.++.++.+++.+..-+...|++|...+-+. ....+.|+..+..|..|+.+++
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Q----q~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADA----RLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 355677777776655566788888877543 2234445555555555555444
No 107
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=25.17 E-value=6.4e+02 Score=26.81 Aligned_cols=10 Identities=60% Similarity=0.737 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 002095 570 QALEELRQTL 579 (967)
Q Consensus 570 qqIedLRe~L 579 (967)
..+++||..|
T Consensus 176 ~~~eeLr~~L 185 (273)
T 3s84_A 176 ASAEELRQRL 185 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 108
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.10 E-value=1.3e+02 Score=26.73 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhc----cchhHHHHHHHhHHHHHHHHHHHHH
Q 002095 904 LPGIQAELDALRRRHSAALELMG----ERDEELEELRADIMDLKEMYREQVN 951 (967)
Q Consensus 904 v~~Le~eleeLqqRYeTlLELLG----EKsEeVEELraDV~DVKeMYR~QId 951 (967)
...|+..+.+++.||..-++-|. ....++..++.|++..-.=|..+.+
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888888888887776554 3445566667766666555555543
No 109
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=24.84 E-value=68 Score=27.30 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=26.4
Q ss_pred HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 922 LELMGERDEELEELRADIMDLKEMYREQVNLLVNKI 957 (967)
Q Consensus 922 LELLGEKsEeVEELraDV~DVKeMYR~QIdeLlkQi 957 (967)
|.++-++..++..|..+|.||..||+..- .||.+.
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla-~lV~eQ 36 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDME-ELVIEQ 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 55666777888899999999999998764 444433
No 110
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.68 E-value=3.6e+02 Score=23.65 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHH
Q 002095 866 LASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAA----ILPGIQAELDALRRRHSAALELMGERDEELEELRADIM 940 (967)
Q Consensus 866 la~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e~~----~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~ 940 (967)
+..+......|...-..-...|-.+......+-.... ....++..+.+|+.||+.+..+..++-..+++--..++
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~Q 116 (118)
T 3uul_A 38 VKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMELQ 116 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 111
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.32 E-value=1.5e+02 Score=33.28 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 866 LASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (967)
Q Consensus 866 la~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e 900 (967)
+..++.+|..|+.+...+..+|-.+..++.++.+.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555433
No 112
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=23.93 E-value=71 Score=27.69 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=25.8
Q ss_pred HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 922 LELMGERDEELEELRADIMDLKEMYREQVNLLVNKI 957 (967)
Q Consensus 922 LELLGEKsEeVEELraDV~DVKeMYR~QIdeLlkQi 957 (967)
|.++-++.+++..|..+|.||.+||+..- .||.++
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla-~lV~eQ 36 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMA-MLVESQ 36 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 55566677788889999999999998764 444433
No 113
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.55 E-value=3.9e+02 Score=31.01 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 002095 468 IRKLRAQIRELEEEKKGLVTKLQ 490 (967)
Q Consensus 468 IKKLRakikElEee~k~Lk~KlE 490 (967)
+|.|+.++++++.++..+..++.
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544433
No 114
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.90 E-value=1e+02 Score=26.87 Aligned_cols=16 Identities=6% Similarity=0.347 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHhHHHH
Q 002095 864 GELASYMSRLASMESI 879 (967)
Q Consensus 864 GEla~Lq~ELarLes~ 879 (967)
.-+..|..++..|+..
T Consensus 29 ~~i~~LE~~v~~le~~ 44 (70)
T 1gd2_E 29 DHLKALETQVVTLKEL 44 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 115
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.74 E-value=5.4e+02 Score=25.09 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002095 648 RSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQ 727 (967)
Q Consensus 648 ~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~l 727 (967)
.+|+..+.+-+..++-...--++-+.+...+..|-..-..++..+|++...++..+++.-.-+. |......+..++.-
T Consensus 21 ~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk--rn~~qQnQQSlDiR 98 (167)
T 4gkw_A 21 ESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK--RNSQQQNQQSLDMR 98 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH--hhhHHHhHhhhhHH
Q ss_pred HhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 002095 728 EGRANQLEEEIKELRRKHKQ---ELQEALMHRELLQQEIEREKTARVDL 773 (967)
Q Consensus 728 e~r~~~LEeeL~eLr~k~~~---elqea~~~~~~Lqq~lE~Ek~~r~el 773 (967)
. |.+|.++++. .+..+..-+..|.++++.++-+-.+.
T Consensus 99 K---------LrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~ 138 (167)
T 4gkw_A 99 K---------LGELEADLKEKDSMVESLTETIGILRKELENEKLKAAEN 138 (167)
T ss_dssp H---------THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 116
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.69 E-value=2.1e+02 Score=22.92 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=22.5
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 447 INQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEK 482 (967)
Q Consensus 447 IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~ 482 (967)
|+-|.+..=.|-..+..++.||-.||..|.-+|.++
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444555566667777888887777666554
No 117
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.52 E-value=2.8e+02 Score=24.81 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (967)
Q Consensus 341 ~~e~~kl~~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~ 420 (967)
|..|++|..+|...|..|-- +|| +|...+.+.-..=++++... -.--..-+++++.|+..|.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~-A~Q---------KLkdA~~~~e~DPDevNK~~--------~~~R~~~V~~lq~Ki~elk 65 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVT-TRQ---------KLKDAERAVELDPDDVNKST--------LQSRRAAVSALETKLGELK 65 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 002095 421 KERDTL 426 (967)
Q Consensus 421 KErD~L 426 (967)
+..+.+
T Consensus 66 rqlAd~ 71 (78)
T 2ic6_A 66 RELADL 71 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 118
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.24 E-value=3.3e+02 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 553 ELESRLREAGERETMLVQALEELRQTLSR 581 (967)
Q Consensus 553 ~Le~~lkEaeere~~L~qqIedLRe~L~R 581 (967)
.+.+++..++....+|...++.|...|.+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444566666666666654
No 119
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=22.21 E-value=5.6e+02 Score=25.03 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHH
Q 002095 553 ELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAI 632 (967)
Q Consensus 553 ~Le~~lkEaeere~~L~qqIedLRe~L~Raeq~a~~rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtL 632 (967)
.|+.+-..-.++...|..++.+.+... +.+.++=++.-+-+..++..|+.++.|++-+-+ .|-.|
T Consensus 42 ~lE~r~~~deEr~~~lE~qLkeak~~a----eeadrKyeE~~RKl~~~E~dLeraeeRae~aE~-----------k~~eL 106 (147)
T 2b9c_A 42 VIESRAQKDEEKMEIQEIQLKEAKHIA----EDADRKYEEVARKLVIIESDLERAEERAELSEG-----------KCAEL 106 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 344444444445555555554444333 344555555666777778888888888877755 67777
Q ss_pred HHHHHHHHHHHHHHHH
Q 002095 633 QETTARRAEAWAAVER 648 (967)
Q Consensus 633 Q~q~asqsenWe~iE~ 648 (967)
...+..-..|+..+|.
T Consensus 107 EeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 107 EEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHH
Confidence 7787777777766553
No 120
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=22.13 E-value=5.1e+02 Score=27.63 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 349 REMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERD 424 (967)
Q Consensus 349 ~~~~~~~~~l~~~~r~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD 424 (967)
=||+-||.+|..+-..|.+ +...|......+.+.++ ..-+..-+..|. .+..+|.+++.|++.+....+
T Consensus 123 FEfraLEa~L~~v~~~Le~---e~~~l~~~~~~~L~~L~---~~i~~~~L~~Ll-~~~k~L~~~~~kv~~vr~~le 191 (261)
T 3rkg_A 123 YEHRALESIFINVMSALET---DFKLHSQICIQILNDLE---NEVNRLKLRHLL-IKSKDLTLFYQKTLLIRDLLD 191 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HSCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---hcCCHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Confidence 5788999999988555555 55556555555555444 344455677776 688899999999887766555
No 121
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.69 E-value=7.4e+02 Score=26.31 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=19.9
Q ss_pred HHHHHHHhc----cCCcCchHHHHHHHHHHHHHHHHH
Q 002095 609 RRCEELVTQ----VPESTRPLLRQIEAIQETTARRAE 641 (967)
Q Consensus 609 sRaEELSss----vseATrPLLRQIEtLQ~q~asqse 641 (967)
.+.+++... +.+....|-++++.|..++.....
T Consensus 132 ~~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~ 168 (273)
T 3s84_A 132 QTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAE 168 (273)
T ss_dssp HHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 235566777788887777665443
No 122
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=21.13 E-value=90 Score=26.43 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=26.8
Q ss_pred HHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095 921 ALELMGERDEELEELRADIMDLKEMYREQVNLLVNKI 957 (967)
Q Consensus 921 lLELLGEKsEeVEELraDV~DVKeMYR~QIdeLlkQi 957 (967)
+|..+-++..++..|..+|.||..||+..- .||.++
T Consensus 3 ~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla-~lV~eQ 38 (68)
T 1n7s_B 3 ALSEIETRHSEIIKLENSIRELHDMFMDMA-MLVESQ 38 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456666777888899999999999998754 444433
No 123
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=21.12 E-value=55 Score=24.87 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHh
Q 002095 902 AILPGIQAELDALRRRHSAALELM 925 (967)
Q Consensus 902 ~~v~~Le~eleeLqqRYeTlLELL 925 (967)
.++-.+++++.+++++.++++.||
T Consensus 10 ~Rl~kVE~qv~~md~KLd~l~~~~ 33 (33)
T 2ovc_A 10 GRVVKVEKQVQSIEHKLDLLLGFY 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467788999999999999999886
No 124
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.97 E-value=4.6e+02 Score=23.58 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhc
Q 002095 367 AKADEIAKMMNENEHLKAVIEDLKR 391 (967)
Q Consensus 367 ~k~~~~a~L~e~n~~L~~~~e~l~~ 391 (967)
.+...++.+.....+|...+..+..
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566677777777777777665
No 125
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.77 E-value=3.4e+02 Score=21.99 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLR 693 (967)
Q Consensus 623 rPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr 693 (967)
.|++.++..|+..+.. +..+.......+..+..+-..+.+.+..+...|..+..++...+
T Consensus 1 kP~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y~ 60 (60)
T 3htk_A 1 KPFANTKKTLENQVEE-----------LTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYYR 60 (60)
T ss_dssp CCSHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 126
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.74 E-value=4e+02 Score=23.81 Aligned_cols=19 Identities=5% Similarity=0.024 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002095 879 IRDSLAEELVKMTAQCEKL 897 (967)
Q Consensus 879 ~Rd~L~eELVrLt~EnEel 897 (967)
+-+.|..||.+|--.+|.+
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~ 46 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQEN 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3333333333333333333
No 127
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.64 E-value=3.8e+02 Score=24.91 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002095 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEK 896 (967)
Q Consensus 865 Ela~Lq~ELarLes~Rd~L~eELVrLt~EnEe 896 (967)
++..++.+|..|+.+++.|+.++-.|-.+++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777666554443
No 128
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=20.35 E-value=2.8e+02 Score=26.92 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 002095 649 SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRA----EQTQLTKSLE 704 (967)
Q Consensus 649 sL~~RL~elE~kl~~A~erEr~~~ekl~~~~~ri~~LE~els~lr~----E~~~L~~qLE 704 (967)
+|..-|.+.+.++.+|..--+.+.+++..+..++..++.++..+++ .+..|..+++
T Consensus 6 SL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~e 65 (130)
T 3cl3_D 6 GSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQ 65 (130)
T ss_dssp ---------------------------------------------CTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888887777677888888888888888888766443 3444444443
No 129
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.19 E-value=2.6e+02 Score=23.13 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002095 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLR 898 (967)
Q Consensus 865 Ela~Lq~ELarLes~Rd~L~eELVrLt~EnEel~ 898 (967)
.+..|+.++..|+..-..|..+|..|..++..|+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555554
Done!