Query 002096
Match_columns 967
No_of_seqs 302 out of 1546
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 2.5E-54 8.4E-59 478.2 16.8 280 680-960 4-283 (351)
2 3k49_A MRNA-binding protein PU 100.0 5.7E-54 1.9E-58 478.2 14.3 286 678-964 2-305 (369)
3 3k62_A FEM-3 mRNA-binding fact 100.0 8.9E-52 3E-56 468.8 20.7 278 663-956 4-315 (412)
4 3v71_A PUF (pumilio/FBF) domai 100.0 6.5E-50 2.2E-54 449.2 19.5 262 695-956 11-295 (382)
5 3bwt_A Protein PUF4; pumilio, 100.0 1.7E-48 5.8E-53 427.1 18.5 260 694-956 5-269 (333)
6 3gvo_A Pumilio 2, pumilio homo 100.0 1E-46 3.6E-51 417.2 16.1 267 674-941 67-343 (351)
7 3k62_A FEM-3 mRNA-binding fact 100.0 6.5E-42 2.2E-46 388.1 18.5 267 673-940 73-402 (412)
8 3v71_A PUF (pumilio/FBF) domai 100.0 2.8E-41 9.5E-46 379.3 18.0 267 674-941 65-382 (382)
9 3k49_A MRNA-binding protein PU 100.0 6.2E-40 2.1E-44 365.3 15.3 278 676-953 38-336 (369)
10 3bwt_A Protein PUF4; pumilio, 100.0 2E-38 6.9E-43 347.4 21.5 280 675-956 19-313 (333)
11 2of3_A ZYG-9; multifunctional 77.0 50 0.0017 35.4 15.5 49 898-952 212-260 (266)
12 2ilr_A Protein FACE, fanconi a 75.1 89 0.0031 33.6 16.7 165 716-891 39-214 (264)
13 3hjl_A Flagellar motor switch 57.9 2.2E+02 0.0076 31.3 16.9 184 749-954 23-223 (329)
14 2ilr_A Protein FACE, fanconi a 55.6 2.2E+02 0.0076 30.6 18.7 181 751-947 38-238 (264)
15 1k1a_A B-cell lymphoma 3-encod 53.5 22 0.00075 34.8 6.6 186 709-906 5-195 (241)
16 3u0r_A Apoptosis inhibitor 5; 50.9 3.6E+02 0.012 31.6 17.1 76 704-781 89-167 (507)
17 3pkr_A FLIG, flagellar motor s 50.9 1E+02 0.0035 33.2 11.7 154 715-869 64-227 (279)
18 1k1a_A B-cell lymphoma 3-encod 46.1 23 0.00077 34.7 5.3 190 744-945 4-198 (241)
19 2pnn_A Transient receptor pote 44.8 17 0.00058 36.9 4.3 87 820-907 147-246 (273)
20 1wdy_A 2-5A-dependent ribonucl 44.0 13 0.00045 37.1 3.3 16 818-833 102-117 (285)
21 3jxi_A Vanilloid receptor-rela 43.4 37 0.0013 33.9 6.5 63 889-951 171-246 (260)
22 2etb_A Transient receptor pote 43.0 40 0.0014 33.7 6.7 63 889-951 167-242 (256)
23 2f8y_A Notch homolog 1, transl 42.3 44 0.0015 32.3 6.7 92 745-841 54-145 (223)
24 2yvy_A MGTE, Mg2+ transporter 41.9 72 0.0025 33.3 8.7 20 719-738 38-57 (278)
25 3pkr_A FLIG, flagellar motor s 41.2 2.1E+02 0.0071 30.9 12.2 109 756-883 57-168 (279)
26 2rfa_A Transient receptor pote 38.9 51 0.0018 32.2 6.6 63 889-951 149-218 (232)
27 3jxi_A Vanilloid receptor-rela 38.7 47 0.0016 33.2 6.4 200 712-915 4-246 (260)
28 4fhr_B Flagellar motor switch 38.1 1.6E+02 0.0056 30.4 10.4 12 857-868 86-97 (216)
29 2etb_A Transient receptor pote 38.0 34 0.0012 34.2 5.3 168 745-916 39-243 (256)
30 2pnn_A Transient receptor pote 37.1 52 0.0018 33.3 6.5 125 818-951 98-254 (273)
31 3eu9_A Huntingtin-interacting 35.8 20 0.00067 34.9 3.0 54 893-950 176-230 (240)
32 4fhr_B Flagellar motor switch 35.8 1.5E+02 0.005 30.8 9.6 90 720-809 11-110 (216)
33 3hjl_A Flagellar motor switch 34.7 5E+02 0.017 28.5 17.6 52 831-883 169-224 (329)
34 2fv2_A RCD1 required for cell 33.9 1.8E+02 0.0062 31.3 10.1 27 912-938 210-236 (268)
35 4ady_A RPN2, 26S proteasome re 33.9 6.8E+02 0.023 31.5 16.6 58 897-955 200-258 (963)
36 3ljn_A Hypothetical protein; a 33.4 58 0.002 34.4 6.4 149 745-907 49-224 (364)
37 3tpo_A Importin subunit alpha- 32.6 5.8E+02 0.02 28.7 17.8 274 678-951 98-418 (529)
38 3aji_A 26S proteasome non-ATPa 31.4 83 0.0028 30.5 6.7 178 713-907 6-185 (231)
39 2rfa_A Transient receptor pote 28.3 1.1E+02 0.0038 29.7 7.0 163 746-914 34-217 (232)
40 3b7b_A Euchromatic histone-lys 27.6 20 0.0007 35.1 1.5 61 890-954 173-234 (237)
41 3utm_A Tankyrase-1; tankyrase, 27.6 63 0.0021 33.3 5.3 17 890-906 243-259 (351)
42 2f8y_A Notch homolog 1, transl 26.4 74 0.0025 30.7 5.3 190 746-957 22-214 (223)
43 2dzn_A Probable 26S proteasome 26.2 79 0.0027 30.6 5.5 153 745-907 32-187 (228)
44 2bpt_A Importin beta-1 subunit 25.9 8.5E+02 0.029 28.5 16.0 10 910-919 751-760 (861)
45 3opb_A SWI5-dependent HO expre 25.3 1E+03 0.035 29.2 16.1 117 808-927 256-387 (778)
46 2xes_A Protein PAT1 homolog 1; 24.6 4.1E+02 0.014 28.1 10.9 43 775-817 72-114 (248)
47 3hra_A Ankyrin repeat family p 24.1 79 0.0027 29.9 4.9 154 746-906 36-190 (201)
48 1oy3_D Transcription factor in 23.5 78 0.0027 31.6 5.0 25 817-841 154-178 (282)
49 1fyh_A Interferon-gamma; cytok 23.1 5.2E+02 0.018 27.6 11.0 154 712-890 26-183 (258)
50 1wdy_A 2-5A-dependent ribonucl 22.5 1.2E+02 0.0041 30.0 6.1 16 818-833 179-194 (285)
51 4ady_A RPN2, 26S proteasome re 21.6 7.3E+02 0.025 31.2 13.8 19 825-843 237-255 (963)
52 3hra_A Ankyrin repeat family p 21.5 91 0.0031 29.5 4.8 155 781-945 35-193 (201)
53 3d9h_A CDNA FLJ77766, highly s 21.3 1.1E+02 0.0037 31.5 5.6 181 708-907 54-235 (285)
54 3aji_A 26S proteasome non-ATPa 21.3 1.5E+02 0.0052 28.6 6.5 145 709-867 36-182 (231)
55 2fv2_A RCD1 required for cell 21.0 2.1E+02 0.0071 30.9 7.6 35 832-867 184-218 (268)
56 3v31_A Ankyrin repeat family A 20.9 2.7E+02 0.0093 25.4 7.9 158 717-891 7-164 (167)
57 3d9h_A CDNA FLJ77766, highly s 20.1 1.2E+02 0.0041 31.1 5.7 175 709-902 88-263 (285)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=2.5e-54 Score=478.16 Aligned_cols=280 Identities=56% Similarity=0.967 Sum_probs=271.2
Q ss_pred hhHHHhhhcCcccccchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhcc
Q 002096 680 ASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH 759 (967)
Q Consensus 680 ~S~lLqef~snk~r~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~ 759 (967)
+|.++++|++++.+.++|++|.|+++++|+||+|||+||++|+.+++++++.||+++.+++.+||+|+||||||||+|++
T Consensus 4 ~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~ 83 (351)
T 3gvo_A 4 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEF 83 (351)
T ss_dssp CCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred ccHHHHHHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHH
Q 002096 760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQF 839 (967)
Q Consensus 760 ~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~ 839 (967)
++++++..|++.+.+++++|+.|+|||||||++|+.++.+++..|++||.+++..|++|++||||||+||++++++.+++
T Consensus 84 ~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~ 163 (351)
T 3gvo_A 84 GSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF 163 (351)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHH
T ss_pred CCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002096 840 IVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG 919 (967)
Q Consensus 840 IId~L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~pkeRk~IIk~Lkg 919 (967)
|++.+.+++..|++|+|||+|||+||++|.. +.+..|+++|.+++..|++|+|||||||++|++++++.|+.|++.|++
T Consensus 164 i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~-~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~ 242 (351)
T 3gvo_A 164 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRG 242 (351)
T ss_dssp HHHHTTTTHHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHCCH-HHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999875 456789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCC
Q 002096 920 QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEEN 960 (967)
Q Consensus 920 nIveLS~nKfGS~VVEKcL~~~d~~eRk~II~ELl~~~Den 960 (967)
++.+||+|||||+||||||+++++++|+.|++||+...++.
T Consensus 243 ~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~ 283 (351)
T 3gvo_A 243 KVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 283 (351)
T ss_dssp CHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETT
T ss_pred HHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999865443
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=5.7e-54 Score=478.20 Aligned_cols=286 Identities=43% Similarity=0.745 Sum_probs=268.9
Q ss_pred hhhhHHHhhhcCccc-----ccchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchh
Q 002096 678 SFASSLLDEFKSNKT-----KCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752 (967)
Q Consensus 678 ~~~S~lLqef~snk~-----r~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~V 752 (967)
.++|.+||+|+++.. +.+.+++|.|+++++|+|++|||+||++|+.+++++++.||+||.+++.+||+|+|||||
T Consensus 2 ~~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~v 81 (369)
T 3k49_A 2 YHRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYV 81 (369)
T ss_dssp ---CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHH
T ss_pred CCcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccH
Confidence 367899999998874 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcC
Q 002096 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECV 832 (967)
Q Consensus 753 VQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~ 832 (967)
|||+|++++++++..|++.+.+++.+|+.|+|||||||++++.++++++..|+.||.+++..|++|++||||||+||+++
T Consensus 82 vQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~ 161 (369)
T 3k49_A 82 IQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETI 161 (369)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCHHH---
Q 002096 833 PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--- 909 (967)
Q Consensus 833 ~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~pke--- 909 (967)
+++.+++|++.+.+++..|++|+|||+|||+||++++.+ .++.|+++|.+.+..|++|+|||||||++|+.++++.
T Consensus 162 ~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~-~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~ 240 (369)
T 3k49_A 162 PIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSE-DQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEM 240 (369)
T ss_dssp CGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHH-HHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHH-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhh
Confidence 999999999999999999999999999999999998754 5678999999999999999999999999999998754
Q ss_pred ---HHHHHHHHHHHHHHHhcCccHHHHHHHHHhhCCHHHHHHHHHHHhcCC-------CCCCccc
Q 002096 910 ---RSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSI-------EENEPLQ 964 (967)
Q Consensus 910 ---Rk~IIk~LkgnIveLS~nKfGS~VVEKcL~~~d~~eRk~II~ELl~~~-------Den~~l~ 964 (967)
++.|++.|++++++|+++||||+||||||+++++++|+.|++||+... +++++|.
T Consensus 241 ~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~ 305 (369)
T 3k49_A 241 VDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMI 305 (369)
T ss_dssp HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHH
T ss_pred HhHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHH
Confidence 678999999999999999999999999999999999999999999864 4556654
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=8.9e-52 Score=468.77 Aligned_cols=278 Identities=27% Similarity=0.560 Sum_probs=256.1
Q ss_pred CCCCCCCcCCCCCChhhhhHHHhhhcCcccccchHHHH--HHHHHHHhhCcccCHHHHHhhhcC-CHHHHHHHHHHHHHH
Q 002096 663 VMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEI--AGHVVEFSADQYGSRFIQQKLETA-TTEEKNMVFQEIMPQ 739 (967)
Q Consensus 663 ~~~~w~~d~g~~m~d~~~S~lLqef~snk~r~~~L~eI--~G~IveLa~Dq~GSRVLQklLE~~-S~Eer~~IfeEI~~~ 739 (967)
+++.|+.|+.+++... +.|.+| +|++++||+||+||||||++|+.+ ++++++.||+||.++
T Consensus 4 ~~~~w~~~~~~~~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~ 67 (412)
T 3k62_A 4 VLPTWSLDSNGEMRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGR 67 (412)
T ss_dssp -CCGGGBCTTSSBCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSS
T ss_pred cCccchhcccCCCCCC----------------CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 5788999998887643 467787 599999999999999999999997 899999999999875
Q ss_pred ---HHHhhhccccchhHhhhhccCCH-------HHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHH-
Q 002096 740 ---ALSLMTDVFGNYVIQKFFEHGTA-------SQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKEL- 808 (967)
Q Consensus 740 ---lleLmtD~fGN~VVQKLLE~~s~-------Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL- 808 (967)
+.+||+|+||||||||+|+++++ +++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|++||
T Consensus 68 ~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~ 147 (412)
T 3k62_A 68 KDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 147 (412)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSC
T ss_pred hhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 89999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred -hhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHH--HHHHHhhcCcchhHHHHHHHhhcCCH-----------HHH
Q 002096 809 -DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY--DQVVTLSTHPYGCRVIQRVLEHCHDE-----------KTQ 874 (967)
Q Consensus 809 -~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~--~~lv~LS~hkyGSrVIQkILE~csde-----------~~r 874 (967)
.+++..|++|++|||||||||++++++.+++|++.+. +++++|++|+|||+|||+||++|.++ +++
T Consensus 148 ~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr 227 (412)
T 3k62_A 148 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLR 227 (412)
T ss_dssp CSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHH
T ss_pred ccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHH
Confidence 7899999999999999999999999999999999998 69999999999999999999999753 233
Q ss_pred H----HHHHHHHHHHHHHhcCccHHHHHHHHHhcCCHH-HHHHHHH-HHHHHHHHHhcCccHHHHHHHHHhhCCHHHHHH
Q 002096 875 S----IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH-ERSAIIK-KLTGQIVQMSQQKFASNVIEKCLSFGTPAERQA 948 (967)
Q Consensus 875 ~----~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~pk-eRk~IIk-~LkgnIveLS~nKfGS~VVEKcL~~~d~~eRk~ 948 (967)
. .|+++|..++..|++|+|||||||++|+++.++ .|+.|++ .|++++++||+|||||+||||||+++++++|+.
T Consensus 228 ~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ 307 (412)
T 3k62_A 228 ERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAE 307 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHH
Confidence 3 466777888899999999999999999999875 5888887 599999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 002096 949 LVNEMLGS 956 (967)
Q Consensus 949 II~ELl~~ 956 (967)
|++||+..
T Consensus 308 ii~ei~~~ 315 (412)
T 3k62_A 308 MMDEIFDG 315 (412)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhh
Confidence 99999964
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=6.5e-50 Score=449.24 Aligned_cols=262 Identities=27% Similarity=0.533 Sum_probs=241.0
Q ss_pred chHHHH--HHHHHHHhhCcccCHHHHHhhhcCCHHH-HHHHHHHHH---HHHHHhhhccccchhHhhhhccCCHHHHHHH
Q 002096 695 FELSEI--AGHVVEFSADQYGSRFIQQKLETATTEE-KNMVFQEIM---PQALSLMTDVFGNYVIQKFFEHGTASQVREL 768 (967)
Q Consensus 695 ~~L~eI--~G~IveLa~Dq~GSRVLQklLE~~S~Ee-r~~IfeEI~---~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~I 768 (967)
+.|.++ +|++++||+||+||||||++|+.+++++ ++.||++|. +++.+||+|+||||||||+|++++++++..|
T Consensus 11 ~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~l 90 (382)
T 3v71_A 11 ISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQREL 90 (382)
T ss_dssp CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHH
T ss_pred CcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHH
Confidence 468888 6999999999999999999999998655 789999985 7899999999999999999999999999999
Q ss_pred HHH-HHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhh-HHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHH-
Q 002096 769 ADQ-LTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG-HIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY- 845 (967)
Q Consensus 769 ie~-L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g-~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~- 845 (967)
+.. +.++++.|+.|+|||||||++|+.++.+++..|+++|.+ +++.|++|++|||||||||++.+++.+++|++.+.
T Consensus 91 i~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~ 170 (382)
T 3v71_A 91 LRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSS 170 (382)
T ss_dssp HHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHS
T ss_pred HHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhc
Confidence 887 689999999999999999999999999999999999998 89999999999999999999999999999999998
Q ss_pred -HHHHHhhcCcchhHHHHHHHhhcCCHHH------H----HHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCH--HHHHH
Q 002096 846 -DQVVTLSTHPYGCRVIQRVLEHCHDEKT------Q----SIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKP--HERSA 912 (967)
Q Consensus 846 -~~lv~LS~hkyGSrVIQkILE~csde~~------r----~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~p--keRk~ 912 (967)
++++++++|+|||+|||+||++|.++.+ + ..|+++|..++..|++|+|||||||++|+++.+ +.|..
T Consensus 171 ~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ 250 (382)
T 3v71_A 171 GDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDT 250 (382)
T ss_dssp TTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHH
T ss_pred ccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHH
Confidence 6999999999999999999999976421 1 246677777788999999999999999999874 56899
Q ss_pred HHHH-HHHHHHHHhcCccHHHHHHHHHhhCCHHHHHHHHHHHhcC
Q 002096 913 IIKK-LTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGS 956 (967)
Q Consensus 913 IIk~-LkgnIveLS~nKfGS~VVEKcL~~~d~~eRk~II~ELl~~ 956 (967)
|+++ |.+++++||+|||||+||||||+++++++|+.|++||+..
T Consensus 251 ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~ 295 (382)
T 3v71_A 251 IIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSG 295 (382)
T ss_dssp HHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9985 9999999999999999999999999999999999999973
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.7e-48 Score=427.11 Aligned_cols=260 Identities=33% Similarity=0.512 Sum_probs=243.9
Q ss_pred cchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccCCHHHHHHHHHHHH
Q 002096 694 CFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT 773 (967)
Q Consensus 694 ~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~ 773 (967)
...+++++|+++++|+||+|||+||++|+.++++++..||+|+.+++.+||+|+||||||||+|++++++++..|++.+.
T Consensus 5 ~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~ 84 (333)
T 3bwt_A 5 DAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISS 84 (333)
T ss_dssp TCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHG
T ss_pred cCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccchhhhhhhhhcC-HHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHhh
Q 002096 774 GHVLTLSLQMYGCRVIQKAIEVVE-LDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLS 852 (967)
Q Consensus 774 g~IveLA~hkyGcrVLQklLE~as-~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~LS 852 (967)
+++.+|+.|+|||||||++++.++ ++++..|+++|.+++..|++|++||||||+||++++++.+++|++.+.+++.+|+
T Consensus 85 ~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~ 164 (333)
T 3bwt_A 85 PHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIA 164 (333)
T ss_dssp GGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHH
T ss_pred hHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999985 5566778999999999999999999999999999999999999999999999999
Q ss_pred cCcchhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHhcCc
Q 002096 853 THPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH----ERSAIIKKLTGQIVQMSQQK 928 (967)
Q Consensus 853 ~hkyGSrVIQkILE~csde~~r~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~pk----eRk~IIk~LkgnIveLS~nK 928 (967)
+|+|||+|||+||++++. +.++.|++++.+++..|++|+|||||||++|++++++ .++.|++.|++++.+|+++|
T Consensus 165 ~~~~Gs~Vvq~~l~~~~~-~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k 243 (333)
T 3bwt_A 165 THRHGCCVLQRCLDHGTT-EQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHK 243 (333)
T ss_dssp TSTTHHHHHHHHHHHCCH-HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTST
T ss_pred cCchhHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHccc
Confidence 999999999999999864 5578899999999999999999999999999988764 36899999999999999999
Q ss_pred cHHHHHHHHHhhCCHHHHHHHHHHHhcC
Q 002096 929 FASNVIEKCLSFGTPAERQALVNEMLGS 956 (967)
Q Consensus 929 fGS~VVEKcL~~~d~~eRk~II~ELl~~ 956 (967)
|||+||+|||+.++ .++.|+.||+..
T Consensus 244 ~gs~Vvek~l~~~~--~~~~ii~ell~~ 269 (333)
T 3bwt_A 244 FGSNVIEKILKTAI--VSEPMILEILNN 269 (333)
T ss_dssp THHHHHHHHHTSHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccc--hhHHHHHHHHhc
Confidence 99999999999754 477888898864
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=1e-46 Score=417.16 Aligned_cols=267 Identities=28% Similarity=0.492 Sum_probs=252.1
Q ss_pred CCChhhhhHHHhh---hcCcccccchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccc
Q 002096 674 SLDESFASSLLDE---FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGN 750 (967)
Q Consensus 674 ~m~d~~~S~lLqe---f~snk~r~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN 750 (967)
.|.|.|+++++|+ +.+.+++..+++++.+++++++.|++||||||++|+.++.+++..|++|+.+++.+|++|+|||
T Consensus 67 L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn 146 (351)
T 3gvo_A 67 LMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGN 146 (351)
T ss_dssp HHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHH
T ss_pred HHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhh
Confidence 3678889999884 5567778888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhh
Q 002096 751 YVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIE 830 (967)
Q Consensus 751 ~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE 830 (967)
|||||+|++++++++..|++.+.+++.+|+.|+|||+|||++|+.++++++..|+++|.+++..|++|++||||||++|+
T Consensus 147 ~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~ 226 (351)
T 3gvo_A 147 HVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLE 226 (351)
T ss_dssp HHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHH-------HHHHHhcCccHHHHHHHHHh
Q 002096 831 CVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ-------SVCMLAQDQYGNYVVQHVLE 903 (967)
Q Consensus 831 ~~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle-------~L~~La~DqyGNYVVQ~ILe 903 (967)
+.+++.+++|++.+.+++..|++|+|||+|||+||+++++ +.++.|+++++. .+..|++|+|||||||++|+
T Consensus 227 ~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~-~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~ 305 (351)
T 3gvo_A 227 HGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASR-AERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMID 305 (351)
T ss_dssp HSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHH
T ss_pred hCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCH-HHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 457789999986 79999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhhC
Q 002096 904 HGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFG 941 (967)
Q Consensus 904 ~~~pkeRk~IIk~LkgnIveLS~nKfGS~VVEKcL~~~ 941 (967)
.+++++|+.|++.|++++..|++++||++|++|+-++.
T Consensus 306 ~~~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 306 MAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp HCCHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999988764
No 7
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=6.5e-42 Score=388.09 Aligned_cols=267 Identities=19% Similarity=0.269 Sum_probs=238.8
Q ss_pred CCCChhhhhHHHhh---hcCc-------ccccchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHH--HHHH
Q 002096 673 GSLDESFASSLLDE---FKSN-------KTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEI--MPQA 740 (967)
Q Consensus 673 ~~m~d~~~S~lLqe---f~sn-------k~r~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI--~~~l 740 (967)
..|.|.|+++++|+ +.+. +++..+++.+.+++++++.|++|||+||++|+.++++++..|++++ .+++
T Consensus 73 ~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i 152 (412)
T 3k62_A 73 KLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARL 152 (412)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHH
T ss_pred HHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccH
Confidence 35789999999995 4455 5677788999999999999999999999999999999999999999 7999
Q ss_pred HHhhhccccchhHhhhhccCCHHHHHHHHHHHH--hhHHHhhhccccchhhhhhhhhcCH------------HHHH----
Q 002096 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLT--GHVLTLSLQMYGCRVIQKAIEVVEL------------DQQT---- 802 (967)
Q Consensus 741 leLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~--g~IveLA~hkyGcrVLQklLE~as~------------eq~~---- 802 (967)
.+|++|+||||||||+|++++++++.+|++.+. +++.+|++|+|||||||+||+.++. +++.
T Consensus 153 ~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~ 232 (412)
T 3k62_A 153 IAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQ 232 (412)
T ss_dssp HHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999998 6999999999999999999999863 4554
Q ss_pred HHHHHHhhHHhHhhcccCCCchhhhhhhcCChh-hHHHHHH-HHHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHHHHHH
Q 002096 803 QMVKELDGHIMRCVRDQNGNHVIQKCIECVPED-AIQFIVL-TFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDE 880 (967)
Q Consensus 803 ~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e-~iq~IId-~L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~LLde 880 (967)
.|++++..++..|+.|+|||||||++|+++.++ .+..|++ .+.+++++||+|||||+|||+||++++ ++.++.|+++
T Consensus 233 ~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~-~~~r~~ii~e 311 (412)
T 3k62_A 233 RLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAP-LELLAEMMDE 311 (412)
T ss_dssp HHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCC-HHHHHHHHHH
Confidence 356777888899999999999999999998765 4677887 589999999999999999999999986 4567789999
Q ss_pred HHH-----------HHHHHhcCccHHHHHHHHHhcCCHH--------------------HHHHHHHHHHHHHHHHhcCcc
Q 002096 881 ILQ-----------SVCMLAQDQYGNYVVQHVLEHGKPH--------------------ERSAIIKKLTGQIVQMSQQKF 929 (967)
Q Consensus 881 Lle-----------~L~~La~DqyGNYVVQ~ILe~~~pk--------------------eRk~IIk~LkgnIveLS~nKf 929 (967)
|+. .+..|++|+|||||||++|+.++.. .++.|+.+++++...|...++
T Consensus 312 i~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~ 391 (412)
T 3k62_A 312 IFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSS 391 (412)
T ss_dssp HHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHH
T ss_pred HHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 986 4889999999999999999998543 257899999999999999999
Q ss_pred HHHHHHHHHhh
Q 002096 930 ASNVIEKCLSF 940 (967)
Q Consensus 930 GS~VVEKcL~~ 940 (967)
|++|++++-+.
T Consensus 392 Gk~i~~~l~~~ 402 (412)
T 3k62_A 392 GKKMIETLANL 402 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred ccHHHHHHHHh
Confidence 99999988664
No 8
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-41 Score=379.28 Aligned_cols=267 Identities=18% Similarity=0.273 Sum_probs=237.7
Q ss_pred CCChhhhhHHHhh---hcCcccccchHHH-HHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHH-HHHHhhhccc
Q 002096 674 SLDESFASSLLDE---FKSNKTKCFELSE-IAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMP-QALSLMTDVF 748 (967)
Q Consensus 674 ~m~d~~~S~lLqe---f~snk~r~~~L~e-I~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~-~lleLmtD~f 748 (967)
.|.|.|+++++|+ +.+.+++..++.+ +.+++++++.|++|||+||++|++++.+++..|++++.+ +++.|++|++
T Consensus 65 L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~ 144 (382)
T 3v71_A 65 LCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQI 144 (382)
T ss_dssp HHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTT
T ss_pred HhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcc
Confidence 4689999999995 4555666677777 589999999999999999999999999999999999998 8999999999
Q ss_pred cchhHhhhhccCCHHHHHHHHHHHH--hhHHHhhhccccchhhhhhhhhcCHHH-------H----HHHHHHHhhHHhHh
Q 002096 749 GNYVIQKFFEHGTASQVRELADQLT--GHVLTLSLQMYGCRVIQKAIEVVELDQ-------Q----TQMVKELDGHIMRC 815 (967)
Q Consensus 749 GN~VVQKLLE~~s~Eqr~~Iie~L~--g~IveLA~hkyGcrVLQklLE~as~eq-------~----~~Lv~EL~g~il~L 815 (967)
|||||||||++++++++.+|++.+. +++.+|+.|+|||+|||+||+.+++++ + ..|++++.+++..|
T Consensus 145 GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L 224 (382)
T 3v71_A 145 SIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRL 224 (382)
T ss_dssp THHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 699999999999999999999886532 2 34677888899999
Q ss_pred hcccCCCchhhhhhhcCCh--hhHHHHHHH-HHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHH---------
Q 002096 816 VRDQNGNHVIQKCIECVPE--DAIQFIVLT-FYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ--------- 883 (967)
Q Consensus 816 v~DqnGNhVIQkLLE~~~~--e~iq~IId~-L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle--------- 883 (967)
+.|+|||||||++|++... +.+..|++. +.+++++|++|||||+||++||+++++ +.++.|+++|+.
T Consensus 225 ~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~-~~r~~ii~el~~~~~~~~~~~ 303 (382)
T 3v71_A 225 SSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPP-ALLHEMMEEIFSGYVKDVESN 303 (382)
T ss_dssp HTSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCH-HHHHHHHHHHCC--CCCSSSC
T ss_pred hhCccccHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCH-HHHHHHHHHHHhhcccccccc
Confidence 9999999999999999753 457888874 999999999999999999999998864 567899999985
Q ss_pred --HHHHHhcCccHHHHHHHHHhcCCHH-------------------HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhhC
Q 002096 884 --SVCMLAQDQYGNYVVQHVLEHGKPH-------------------ERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFG 941 (967)
Q Consensus 884 --~L~~La~DqyGNYVVQ~ILe~~~pk-------------------eRk~IIk~LkgnIveLS~nKfGS~VVEKcL~~~ 941 (967)
.+..|++|+|||||||++|+.+++. .+++|+.++++++..|...++|.+||+++-+++
T Consensus 304 ~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~~ 382 (382)
T 3v71_A 304 RDALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRHG 382 (382)
T ss_dssp CCHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC-
T ss_pred chHHHHHHCCCCccHHHHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhcC
Confidence 6889999999999999999998752 357899999999999999999999999987764
No 9
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=6.2e-40 Score=365.31 Aligned_cols=278 Identities=24% Similarity=0.342 Sum_probs=171.6
Q ss_pred ChhhhhHHHhh---hcCcccccchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchh
Q 002096 676 DESFASSLLDE---FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752 (967)
Q Consensus 676 ~d~~~S~lLqe---f~snk~r~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~V 752 (967)
-|+++++++|+ ..+.+++..++.+|.++++++++|++|++|||++|++++++++..|++++.+++.+|++|+||++|
T Consensus 38 ~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rV 117 (369)
T 3k49_A 38 KDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRV 117 (369)
T ss_dssp TSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHH
T ss_pred cCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHH
Confidence 56667777773 233455666666677777777777777777777777766666666666666666666666666666
Q ss_pred HhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcC
Q 002096 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECV 832 (967)
Q Consensus 753 VQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~ 832 (967)
||+++++++++++..|++++.+++..|+.|.||++|||++|+.++++.+..|++.+.+++..++.|++|++|||+||+++
T Consensus 118 lQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~ 197 (369)
T 3k49_A 118 IQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFG 197 (369)
T ss_dssp HHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhC
Confidence 66666666666666666666666666666666666666666666555555666666666666666666666666666666
Q ss_pred ChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCH
Q 002096 833 PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEK-----TQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKP 907 (967)
Q Consensus 833 ~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE~csde~-----~r~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~p 907 (967)
+++.++.|++.+..++..|++++||++|||++|+.+.+.. .++.|++.+.+++..|++++||++||+++|+.+++
T Consensus 198 ~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~ 277 (369)
T 3k49_A 198 SSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSK 277 (369)
T ss_dssp CHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhCCH
Confidence 6555566666666666666666666666666666654432 23455555555666666666666666666666666
Q ss_pred HHHHHHHHHHHH-------------HHHHHhcCccHHHHHHHHHhhCCHHHHHHHHHHH
Q 002096 908 HERSAIIKKLTG-------------QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953 (967)
Q Consensus 908 keRk~IIk~Lkg-------------nIveLS~nKfGS~VVEKcL~~~d~~eRk~II~EL 953 (967)
+.|+.|++.|.+ .+..|++|+||++||+++|+.+++++|+.|+++|
T Consensus 278 ~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~~~i 336 (369)
T 3k49_A 278 NQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAI 336 (369)
T ss_dssp HHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666666655532 2455666666666666666666666665555554
No 10
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2e-38 Score=347.36 Aligned_cols=280 Identities=17% Similarity=0.279 Sum_probs=254.5
Q ss_pred CChhhhhHHHhh---hcCcccccchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccch
Q 002096 675 LDESFASSLLDE---FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNY 751 (967)
Q Consensus 675 m~d~~~S~lLqe---f~snk~r~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~ 751 (967)
.-|.++++++|+ +.+.+++..++.++.++++++++|++|+++||++|++++++++..|++++.+++.+|++|+||++
T Consensus 19 ~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~r 98 (333)
T 3bwt_A 19 CKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTR 98 (333)
T ss_dssp TSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHH
T ss_pred hcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccH
Confidence 478899999994 45667788889999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhccCC-HHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhh
Q 002096 752 VIQKFFEHGT-ASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIE 830 (967)
Q Consensus 752 VVQKLLE~~s-~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE 830 (967)
|||+++++++ ++++..|+++|.+++..|+.+.||++|||++|+..+++.+..|++.+.+++..++.|++|++|||+||+
T Consensus 99 viQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq~~l~ 178 (333)
T 3bwt_A 99 ALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLD 178 (333)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 9999999974 667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHH---HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCH
Q 002096 831 CVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEK---TQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKP 907 (967)
Q Consensus 831 ~~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE~csde~---~r~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~p 907 (967)
+++++.++.|++++.+++..|++++||++|||++|+.+.+.. .+..|++.+.+++..|++++||++||+++|+.++
T Consensus 179 ~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~~~~- 257 (333)
T 3bwt_A 179 HGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI- 257 (333)
T ss_dssp HCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHTSHH-
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccc-
Confidence 999999999999999999999999999999999999875432 3467889999999999999999999999999754
Q ss_pred HHHHHHHHHHH-----HHHHHHhcCccHHHHHHHHHhhCCHH---HHHHHHHHHhcC
Q 002096 908 HERSAIIKKLT-----GQIVQMSQQKFASNVIEKCLSFGTPA---ERQALVNEMLGS 956 (967)
Q Consensus 908 keRk~IIk~Lk-----gnIveLS~nKfGS~VVEKcL~~~d~~---eRk~II~ELl~~ 956 (967)
.++.|++++. +++..|+.|.||++||+++|+.++++ .++.|+++|...
T Consensus 258 -~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~ 313 (333)
T 3bwt_A 258 -VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPL 313 (333)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGG
T ss_pred -hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHh
Confidence 4667777765 57999999999999999999987654 688999998765
No 11
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=76.96 E-value=50 Score=35.39 Aligned_cols=49 Identities=12% Similarity=0.056 Sum_probs=22.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhhCCHHHHHHHHHH
Q 002096 898 VQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNE 952 (967)
Q Consensus 898 VQ~ILe~~~pkeRk~IIk~LkgnIveLS~nKfGS~VVEKcL~~~d~~eRk~II~E 952 (967)
|-++|.-.+...|+.-+..+..-+... |..| -+++-..+++++..|-+.
T Consensus 212 ia~ll~D~d~~VR~aAl~~lve~y~~~-----Gd~v-~k~lg~L~~~~~~~l~er 260 (266)
T 2of3_A 212 VAPFVGDKDVNVRNAAINVLVACFKFE-----GDQM-WKAAGRMADKDKSLVEER 260 (266)
T ss_dssp HGGGGGCSSHHHHHHHHHHHHHHHHHH-----TTHH-HHHHCCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHh-----hHHH-HHHHhcCCHHHHHHHHHH
Confidence 333444445555666665555444332 3332 233333455555554443
No 12
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=75.10 E-value=89 Score=33.59 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=75.7
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccC---CHHHHHHHHH-HHHhhHHHhhhccccchhhhh
Q 002096 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHG---TASQVRELAD-QLTGHVLTLSLQMYGCRVIQK 791 (967)
Q Consensus 716 VLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~---s~Eqr~~Iie-~L~g~IveLA~hkyGcrVLQk 791 (967)
..=++|..|++.+.+.+.+++.-+ .|....+.. +++.++... +-..-..++. .+.+++..| ..-++|++..
T Consensus 39 ~~l~~L~~~sp~q~e~lc~~L~l~--~lsd~~l~~-lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L--~~~ASR~L~s 113 (264)
T 2ilr_A 39 VELQLLHECSPSQMDLLCAQLQLP--QLSDLGLLR-LCTWLLALSPDLSLSNATVLTRSLFLGRILSL--TSSASRLLTT 113 (264)
T ss_dssp HHHHGGGGCCHHHHHHHHHHHTGG--GCCHHHHHH-HHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC--SSCCCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc--cCCHHHHHH-HHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc--cCcchhHHHH
Confidence 333466669999999999886532 111111111 223444432 1223333333 345666666 7777888776
Q ss_pred hhhhcCHHHHHHHHHHHhhHHhHhhcccCCC---chhhhhh--hcCChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHh
Q 002096 792 AIEVVELDQQTQMVKELDGHIMRCVRDQNGN---HVIQKCI--ECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLE 866 (967)
Q Consensus 792 lLE~as~eq~~~Lv~EL~g~il~Lv~DqnGN---hVIQkLL--E~~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE 866 (967)
++..+-...-..+++.+...++ ..-..|+ -+|.+++ ++.+++....++..+ .++.-...-..|+|.+++
T Consensus 114 al~~f~k~~p~a~~~all~PLL--~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~i----L~l~WtE~~~~Vlq~lL~ 187 (264)
T 2ilr_A 114 ALTSFAAKYTYPVCSALLDPVL--QAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQI----LELPWKEETFLVLQSLLE 187 (264)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHH--HSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHH----HHSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCcHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHH----HhccchHHHHHHHHHHHh
Confidence 6654333333344444332221 1112222 2455555 345555544443333 334444455566677776
Q ss_pred hcC--CHHHHHHHHHHHHHHHHHHhcC
Q 002096 867 HCH--DEKTQSIMMDEILQSVCMLAQD 891 (967)
Q Consensus 867 ~cs--de~~r~~LLdeLle~L~~La~D 891 (967)
... +++....+++.+.+....+.++
T Consensus 188 ~k~~L~~~~i~~Lv~~L~~~a~~~skS 214 (264)
T 2ilr_A 188 RQVEMTPEKFSVLMEKLCKKGLAATTS 214 (264)
T ss_dssp TCCCCCHHHHHHHHHHHHC-----CCS
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHhhcc
Confidence 532 2333333444443333333333
No 13
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=57.95 E-value=2.2e+02 Score=31.30 Aligned_cols=184 Identities=11% Similarity=0.118 Sum_probs=97.7
Q ss_pred cchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhc-ccCCCchhhh
Q 002096 749 GNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVR-DQNGNHVIQK 827 (967)
Q Consensus 749 GN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~-DqnGNhVIQk 827 (967)
|.-.--++++|.++++.+.|..++ .-+...+.++...+++||...+..-.. ...| --++.
T Consensus 23 Gee~Aa~vlk~L~~~ei~~l~~~m------------------a~l~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg-~~~~~ 83 (329)
T 3hjl_A 23 PEEVSMNIVKELSEEELQKLFALA------------------KDLESVPEEEIENIAEELLDEIKKAGIKIKKP-EEFIE 83 (329)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHH------------------HTCCCCCHHHHHHHHHHHHHHHHHTTCCCSCH-HHHHH
T ss_pred ChHhHHHHHHcCCHHHHHHHHHHH------------------HccCCCCHHHHHHHHHHHHHHHHhcCCCCCch-HHHHH
Confidence 333444556666665555444432 334567788888899998765443322 2233 45566
Q ss_pred hhhc-CChhhHHHHHHHHHHHHH-----HhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHH----HHHHHhcCccHHHH
Q 002096 828 CIEC-VPEDAIQFIVLTFYDQVV-----TLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ----SVCMLAQDQYGNYV 897 (967)
Q Consensus 828 LLE~-~~~e~iq~IId~L~~~lv-----~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle----~L~~La~DqyGNYV 897 (967)
+|+. ..++....|++.+..... .| .+.-...|-.+|..-+ +++...|+..+-. .+....-+..-+-|
T Consensus 84 ~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L--~~~dp~~la~~i~~Eh-PQtiAlILs~L~p~~AA~vL~~Lp~~~r~ev 160 (329)
T 3hjl_A 84 NIKKVIPPTLAEKFRGILELGDAEKILKEI--EKVDSRILASLLKNEH-PQTIALFLSQLSPKKSAEIIQNLPEELKKEV 160 (329)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--HTSCHHHHHHHHTTSC-HHHHHHHHTTSCHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhccccCCHHHHH--HCCCHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHHhCCHHHHHHH
Confidence 6654 667777788888765321 11 1122333444444322 1122222211111 23334444455667
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHHHHHHh----cCccHHHHHHHHHhhCCHHHHHHHHHHHh
Q 002096 898 VQHVLEHG--KPHERSAIIKKLTGQIVQMS----QQKFASNVIEKCLSFGTPAERQALVNEML 954 (967)
Q Consensus 898 VQ~ILe~~--~pkeRk~IIk~LkgnIveLS----~nKfGS~VVEKcL~~~d~~eRk~II~ELl 954 (967)
+.++.... .|+.-+.|=+.|...+..+. ...-|...+-.+++..+....+.|++.|-
T Consensus 161 ~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~~L~ 223 (329)
T 3hjl_A 161 VKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIG 223 (329)
T ss_dssp HHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHHHHHHHHH
Confidence 77766654 35555555555555544432 23556777778888887777777776654
No 14
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=55.59 E-value=2.2e+02 Score=30.56 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=107.1
Q ss_pred hhHhhhhccCCHHHHHHHHHHHH------hhHHHhhhccccchhhhhhhhhc---CHHHHHHHHHH-HhhHHhHhhcccC
Q 002096 751 YVIQKFFEHGTASQVRELADQLT------GHVLTLSLQMYGCRVIQKAIEVV---ELDQQTQMVKE-LDGHIMRCVRDQN 820 (967)
Q Consensus 751 ~VVQKLLE~~s~Eqr~~Iie~L~------g~IveLA~hkyGcrVLQklLE~a---s~eq~~~Lv~E-L~g~il~Lv~Dqn 820 (967)
-+.-+++..+++.|.+.+.+++. +.+..+| +.++... +-.....+++. |.+++..+ ..-
T Consensus 38 ~~~l~~L~~~sp~q~e~lc~~L~l~~lsd~~l~~lc---------~~ll~ls~dlS~~~a~v~~~~l~LPkil~L--~~~ 106 (264)
T 2ilr_A 38 PVELQLLHECSPSQMDLLCAQLQLPQLSDLGLLRLC---------TWLLALSPDLSLSNATVLTRSLFLGRILSL--TSS 106 (264)
T ss_dssp CHHHHGGGGCCHHHHHHHHHHHTGGGCCHHHHHHHH---------HHHHHCSSCCCHHHHHHHHHHHHHHHHHHC--SSC
T ss_pred hHHHHHHHhCCHHHHHHHHHHHhhccCCHHHHHHHH---------HHHHcCCcchhhhhHHHHHHHHHHHHHHhc--cCc
Confidence 34556777799999999988875 3344443 2333321 23344455554 55777777 444
Q ss_pred CCchhhh-hhhcCChhhHHHHHHHHH-HHHHHhhcCcchhHHHHHHHh-hcCCHHHHHHHHHHHHHHHHHHhcCccHHHH
Q 002096 821 GNHVIQK-CIECVPEDAIQFIVLTFY-DQVVTLSTHPYGCRVIQRVLE-HCHDEKTQSIMMDEILQSVCMLAQDQYGNYV 897 (967)
Q Consensus 821 GNhVIQk-LLE~~~~e~iq~IId~L~-~~lv~LS~hkyGSrVIQkILE-~csde~~r~~LLdeLle~L~~La~DqyGNYV 897 (967)
+..++.. +++++ ...-..+++.+. .-+..-.....=|-+|.++++ .|-+.+.+..++..++ ++.-+..---|
T Consensus 107 ASR~L~sal~~f~-k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE~~~~V 181 (264)
T 2ilr_A 107 ASRLLTTALTSFA-AKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL----ELPWKEETFLV 181 (264)
T ss_dssp CCHHHHHHHHHHH-HHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCHHHHHH
T ss_pred chhHHHHHHHHHH-HhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hccchHHHHHH
Confidence 5555444 44443 333344455433 333334445556889999998 7777777665665554 46666667789
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHhh---CCHHHHH
Q 002096 898 VQHVLEHG---KPHERSAIIKKLTGQIVQMSQQ-KFASNVIEKCLSF---GTPAERQ 947 (967)
Q Consensus 898 VQ~ILe~~---~pkeRk~IIk~LkgnIveLS~n-KfGS~VVEKcL~~---~d~~eRk 947 (967)
+|.+|+.. +++....++..|...-..++++ |||..++.-+=++ ..+.+|.
T Consensus 182 lq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~itky~~~i~~~~~~ 238 (264)
T 2ilr_A 182 LQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVMTKYQANITETQRL 238 (264)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHHHHTGGGCCHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHHHHhHHhcCHHHHH
Confidence 99999976 4666778888888877777764 6776655444333 4555553
No 15
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.51 E-value=22 Score=34.84 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=92.0
Q ss_pred hCcccCHHHHHhhhcCCHHHHHHHHHHHHHHH-HHhhhccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccch
Q 002096 709 ADQYGSRFIQQKLETATTEEKNMVFQEIMPQA-LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCR 787 (967)
Q Consensus 709 ~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~l-leLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcr 787 (967)
.|..|.-.|...++.+..+..+.+++.+...- .--..|..|.-.+...+..+..+..+.|++.= ...-..+..|..
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t 81 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG---ASPMALDRHGQT 81 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCC
Confidence 46677777777777777776666666443221 11234566777777777777666555554421 111123556666
Q ss_pred hhhhhhhhcCHHHHHHHHHHHhh-HHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHh-hcC-cchhHHHHHH
Q 002096 788 VIQKAIEVVELDQQTQMVKELDG-HIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTL-STH-PYGCRVIQRV 864 (967)
Q Consensus 788 VLQklLE~as~eq~~~Lv~EL~g-~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~L-S~h-kyGSrVIQkI 864 (967)
.+..++.....+....|++.... .+..-..+..|...+..++.....+..+.+++. -..+ ..+ ..|...+..+
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER----GADIDAVDIKSGRSPLIHA 157 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc----CCCcccccccCCCcHHHHH
Confidence 66666666555444444333210 011123455676667666665554444444332 1111 112 4555555555
Q ss_pred HhhcCCHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHHhcCC
Q 002096 865 LEHCHDEKTQSIMMDEILQS-VCMLAQDQYGNYVVQHVLEHGK 906 (967)
Q Consensus 865 LE~csde~~r~~LLdeLle~-L~~La~DqyGNYVVQ~ILe~~~ 906 (967)
+.... ..+++.|++. ...-..|..|...+......+.
T Consensus 158 ~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 195 (241)
T 1k1a_A 158 VENNS-----LSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195 (241)
T ss_dssp HHTTC-----HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC
T ss_pred HHcCC-----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 54432 1233333332 1112345566666666665554
No 16
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=50.91 E-value=3.6e+02 Score=31.55 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=35.3
Q ss_pred HHHHhhCcccCHHH---HHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhh
Q 002096 704 VVEFSADQYGSRFI---QQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLS 780 (967)
Q Consensus 704 IveLa~Dq~GSRVL---QklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA 780 (967)
+..+|+|.+-+|+. =++|......|+..|=+.+...+..=.+..++....| + ..+.+..|+.++..|..++..|-
T Consensus 89 Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~-i-~~~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 89 LPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ-I-LQGEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp GGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-H-HHSCHHHHHHHHHHHHHHGGGSC
T ss_pred hHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHH-H-cccchHHHHHHHHHHHHHHhhcc
Confidence 55566665555543 3344444555555554444333221112222221111 1 11355566777777766665544
Q ss_pred h
Q 002096 781 L 781 (967)
Q Consensus 781 ~ 781 (967)
.
T Consensus 167 ~ 167 (507)
T 3u0r_A 167 D 167 (507)
T ss_dssp T
T ss_pred h
Confidence 4
No 17
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=50.91 E-value=1e+02 Score=33.25 Aligned_cols=154 Identities=8% Similarity=0.117 Sum_probs=85.5
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHH----HHHhhhccccchhHhhhhc--cCCHHHHHHHHHHHHhhHHHh---hhcccc
Q 002096 715 RFIQQKLETATTEEKNMVFQEIMPQ----ALSLMTDVFGNYVIQKFFE--HGTASQVRELADQLTGHVLTL---SLQMYG 785 (967)
Q Consensus 715 RVLQklLE~~S~Eer~~IfeEI~~~----lleLmtD~fGN~VVQKLLE--~~s~Eqr~~Iie~L~g~IveL---A~hkyG 785 (967)
+.|-.+|+...+..+..|+..+.+. ++...-...-.-|+.++.. ..+++..+.|-+.|...+..+ ....-|
T Consensus 64 ~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG 143 (279)
T 3pkr_A 64 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGG 143 (279)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCc
Confidence 3455566666666666666554432 2333333344455555543 345666666666665555433 234456
Q ss_pred chhhhhhhhhcCHHHHHHHHHHHhhHHhHhhccc-CCCchhhhhhhcCChhhHHHHHHHHHHHHHHhhcCcchhHHHHHH
Q 002096 786 CRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQ-NGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRV 864 (967)
Q Consensus 786 crVLQklLE~as~eq~~~Lv~EL~g~il~Lv~Dq-nGNhVIQkLLE~~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkI 864 (967)
...+-.+|...+......|++.|...=..++..- .--||...++ ..++..++.|+..+-...+.++..--.--+-+++
T Consensus 144 ~~~vA~ILN~~d~~~e~~iL~~L~~~dpelAe~Ir~~MF~FeDl~-~lddr~iq~llreV~~~~L~~ALKGa~~elreki 222 (279)
T 3pkr_A 144 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIV-KLDNFAIREILKVADKKDLSLALKTSTKDLTDKF 222 (279)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGGG-GSCHHHHHHHHHHSCHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCHHHHHHHHHhccCHHHHh-cCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHH
Confidence 6777788888888877778777653322222211 1123444444 4466677777777766666666554445566666
Q ss_pred HhhcC
Q 002096 865 LEHCH 869 (967)
Q Consensus 865 LE~cs 869 (967)
|...+
T Consensus 223 l~nmS 227 (279)
T 3pkr_A 223 LNNMS 227 (279)
T ss_dssp HTTSC
T ss_pred HHhcC
Confidence 66554
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.10 E-value=23 Score=34.75 Aligned_cols=190 Identities=11% Similarity=0.026 Sum_probs=104.4
Q ss_pred hhccccchhHhhhhccCCHHHHHHHHHHHHhhHHH-hhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCC
Q 002096 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLT-LSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGN 822 (967)
Q Consensus 744 mtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~Ive-LA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGN 822 (967)
.+|..|.-.+...++++..+..+.|++.+...-.. -..+..|.-.+..++.....+....|++. ....-..|..|.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~ 80 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA---GASPMALDRHGQ 80 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCC
Confidence 35788888999999999888888888765432222 23456677777777777666544444432 111123577788
Q ss_pred chhhhhhhcCChhhHHHHHHHHHHHH-HHhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-HhcC-ccHHHHHH
Q 002096 823 HVIQKCIECVPEDAIQFIVLTFYDQV-VTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCM-LAQD-QYGNYVVQ 899 (967)
Q Consensus 823 hVIQkLLE~~~~e~iq~IId~L~~~l-v~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~L~~-La~D-qyGNYVVQ 899 (967)
..+..++.....+..+.+++.....- ..-..+..|...+...+.... ..+++.+++.-.. -..+ ..|...+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLI 155 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHH
Confidence 88888887776665555554321100 111234556666665555432 2344444443111 1233 66777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHhhCCHHH
Q 002096 900 HVLEHGKPHERSAIIKKLTGQIVQM-SQQKFASNVIEKCLSFGTPAE 945 (967)
Q Consensus 900 ~ILe~~~pkeRk~IIk~LkgnIveL-S~nKfGS~VVEKcL~~~d~~e 945 (967)
..+..+..+.-+.|++ +-..+ ..++.|.-.+..+...+..+.
T Consensus 156 ~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~ 198 (241)
T 1k1a_A 156 HAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGLLPL 198 (241)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 7777766543333333 21111 345566666666666655543
No 19
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=44.75 E-value=17 Score=36.93 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCchhhhhhhcCChhhHHHHHHHHHHH-HHHhhcCcchhHHHHHHHhhcCCHHHH----HHHHHHHHHHHHHH------
Q 002096 820 NGNHVIQKCIECVPEDAIQFIVLTFYDQ-VVTLSTHPYGCRVIQRVLEHCHDEKTQ----SIMMDEILQSVCML------ 888 (967)
Q Consensus 820 nGNhVIQkLLE~~~~e~iq~IId~L~~~-lv~LS~hkyGSrVIQkILE~csde~~r----~~LLdeLle~L~~L------ 888 (967)
+|...+...+.....+..+.+++... + ..--..+..|...+....+........ ..+++.|++.-..+
T Consensus 147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~ 225 (273)
T 2pnn_A 147 FGELPLSLAACTNQLAIVKFLLQNSW-QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225 (273)
T ss_dssp SCBSHHHHHHHTTCHHHHHHHHHCSS-CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccc-CCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccc
Confidence 46666666665554444333333100 1 011134455666665555543321111 23334444433333
Q ss_pred --hcCccHHHHHHHHHhcCCH
Q 002096 889 --AQDQYGNYVVQHVLEHGKP 907 (967)
Q Consensus 889 --a~DqyGNYVVQ~ILe~~~p 907 (967)
+.|..|.-.+......+..
T Consensus 226 ~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 226 EEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp GGCCCTTSCCHHHHHHHTTCH
T ss_pred ccccCCCCCCHHHHHHHhChH
Confidence 3566776666666665553
No 20
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.05 E-value=13 Score=37.14 Aligned_cols=16 Identities=13% Similarity=-0.026 Sum_probs=7.1
Q ss_pred ccCCCchhhhhhhcCC
Q 002096 818 DQNGNHVIQKCIECVP 833 (967)
Q Consensus 818 DqnGNhVIQkLLE~~~ 833 (967)
|.+|...+..++....
T Consensus 102 ~~~g~t~L~~A~~~~~ 117 (285)
T 1wdy_A 102 DFYGFTAFMEAAVYGK 117 (285)
T ss_dssp CTTCCBHHHHHHHTTC
T ss_pred CcccCCHHHHHHHhCC
Confidence 3444444444444433
No 21
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.36 E-value=37 Score=33.91 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=39.7
Q ss_pred hcCccHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHH--------hcCccHHHHHHHHHhhCCHHHHHHHHH
Q 002096 889 AQDQYGNYVVQHVLEHGK--P---HERSAIIKKLTGQIVQM--------SQQKFASNVIEKCLSFGTPAERQALVN 951 (967)
Q Consensus 889 a~DqyGNYVVQ~ILe~~~--p---keRk~IIk~LkgnIveL--------S~nKfGS~VVEKcL~~~d~~eRk~II~ 951 (967)
+.|..|...+......+. . +....+++.|..+-..+ ..++.|.-.+..+...+..+.-+.+++
T Consensus 171 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246 (260)
T ss_dssp CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 457778877777776554 1 11245666666665655 577778777777777776665444444
No 22
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=43.04 E-value=40 Score=33.70 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=36.6
Q ss_pred hcCccHHHHHHHHHh--cCCHH---HHHHHHHHHHHHHHHH--------hcCccHHHHHHHHHhhCCHHHHHHHHH
Q 002096 889 AQDQYGNYVVQHVLE--HGKPH---ERSAIIKKLTGQIVQM--------SQQKFASNVIEKCLSFGTPAERQALVN 951 (967)
Q Consensus 889 a~DqyGNYVVQ~ILe--~~~pk---eRk~IIk~LkgnIveL--------S~nKfGS~VVEKcL~~~d~~eRk~II~ 951 (967)
+.|..|...+..... ....+ ....+++.|..+-..+ ..++.|.-.+..+...+..+.-+.+++
T Consensus 167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 242 (256)
T 2etb_A 167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242 (256)
T ss_dssp CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence 457777777777766 33332 1223666666655554 467777777776666666554444443
No 23
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=42.31 E-value=44 Score=32.32 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=41.4
Q ss_pred hccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCch
Q 002096 745 TDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHV 824 (967)
Q Consensus 745 tD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhV 824 (967)
.|..|.-.+...+.....+..+.|++.-. ...-..+..|...+..++.....+....|++. ....-..|..|...
T Consensus 54 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~ 128 (223)
T 2f8y_A 54 QDNMGRTPLHAAVSADAQGVFQILIRNRA--TDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSA 128 (223)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHBTT--SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTTSCBH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc---CCCCcCcCCCCCcH
Confidence 45556666666666665554444443211 01112244555555555544444332222221 01111345566666
Q ss_pred hhhhhhcCChhhHHHHH
Q 002096 825 IQKCIECVPEDAIQFIV 841 (967)
Q Consensus 825 IQkLLE~~~~e~iq~II 841 (967)
+..++.....+..+.++
T Consensus 129 L~~A~~~~~~~~v~~Ll 145 (223)
T 2f8y_A 129 LHWAAAVNNVDAAVVLL 145 (223)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 66666655544444433
No 24
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=41.94 E-value=72 Score=33.28 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=11.5
Q ss_pred HhhhcCCHHHHHHHHHHHHH
Q 002096 719 QKLETATTEEKNMVFQEIMP 738 (967)
Q Consensus 719 klLE~~S~Eer~~IfeEI~~ 738 (967)
.+|+..+++++..||+.+-+
T Consensus 38 ~~l~~L~~~~~~~v~~~l~~ 57 (278)
T 2yvy_A 38 ALWDELKGEHRYVVLTLLPK 57 (278)
T ss_dssp HGGGGSCHHHHHHHHHHSCH
T ss_pred HHHHhCCHHHHHHHHHhCCh
Confidence 35566666666666655433
No 25
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=41.16 E-value=2.1e+02 Score=30.89 Aligned_cols=109 Identities=7% Similarity=0.148 Sum_probs=49.4
Q ss_pred hhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChh
Q 002096 756 FFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835 (967)
Q Consensus 756 LLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e 835 (967)
.++..++++...++..=.+++..+.+.+--...--++|...+.+.+..++..+. -++..+++
T Consensus 57 ~L~~~dp~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~Ria------------------~l~~v~p~ 118 (279)
T 3pkr_A 57 YLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMA------------------NLGEISPQ 118 (279)
T ss_dssp GGGGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHH------------------TCCCCCHH
T ss_pred HHhCCCHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHH------------------ccCCCCHH
Confidence 444556666555555444554444333322222223333344444433333321 12334555
Q ss_pred hHHHHHHHHHHHHHHhh---cCcchhHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002096 836 AIQFIVLTFYDQVVTLS---THPYGCRVIQRVLEHCHDEKTQSIMMDEILQ 883 (967)
Q Consensus 836 ~iq~IId~L~~~lv~LS---~hkyGSrVIQkILE~csde~~r~~LLdeLle 883 (967)
..+.|-+.+...+..+. ...-|...+-.+|+.... .+.+.|++.|.+
T Consensus 119 ~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~-~~e~~iL~~L~~ 168 (279)
T 3pkr_A 119 VVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQ-KSAKTTLARIES 168 (279)
T ss_dssp HHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCCh-HHHHHHHHHHHh
Confidence 55555555555444332 233456666677776543 233445555443
No 26
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.88 E-value=51 Score=32.16 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=39.3
Q ss_pred hcCccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------HhcCccHHHHHHHHHhhCCHHHHHHHHH
Q 002096 889 AQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ-------MSQQKFASNVIEKCLSFGTPAERQALVN 951 (967)
Q Consensus 889 a~DqyGNYVVQ~ILe~~~pkeRk~IIk~LkgnIve-------LS~nKfGS~VVEKcL~~~d~~eRk~II~ 951 (967)
+.|..|...+...+..+..+.-..|++.|..+-.. -..++.|.-.+..+...+..+.-+.+++
T Consensus 149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 45777888888877777766555566665544322 2456777777777776666554444443
No 27
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.66 E-value=47 Score=33.15 Aligned_cols=200 Identities=12% Similarity=0.118 Sum_probs=100.7
Q ss_pred ccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHh-----hhccccchhHhhhh---ccCCHHHHHHHHHHHHh--hHHHh--
Q 002096 712 YGSRFIQQKLETATTEEKNMVFQEIMPQALSL-----MTDVFGNYVIQKFF---EHGTASQVRELADQLTG--HVLTL-- 779 (967)
Q Consensus 712 ~GSRVLQklLE~~S~Eer~~IfeEI~~~lleL-----mtD~fGN~VVQKLL---E~~s~Eqr~~Iie~L~g--~IveL-- 779 (967)
++-..|-..++.+..+....+++.+..+-..+ ..|..|.-.+...+ +.+..+..+.|++.-.. .+..+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 34444555555555555555555433322111 12344666666555 44555555555554221 11111
Q ss_pred ----hhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcc--------------cCCCchhhhhhhcCChhhHHHHH
Q 002096 780 ----SLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRD--------------QNGNHVIQKCIECVPEDAIQFIV 841 (967)
Q Consensus 780 ----A~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~D--------------qnGNhVIQkLLE~~~~e~iq~II 841 (967)
..+..|.-.|..++.....+....|++. + .-.-..+ .+|...+...+.....+..+.++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEK--G-ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhC--C-CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 1123666677777766665544333332 0 0011122 46777777777766655444444
Q ss_pred HHHHHHHHH-hhcCcchhHHHHHHHhhcCCHHH----HHHHHHHHHHHHHHH--------hcCccHHHHHHHHHhcCCHH
Q 002096 842 LTFYDQVVT-LSTHPYGCRVIQRVLEHCHDEKT----QSIMMDEILQSVCML--------AQDQYGNYVVQHVLEHGKPH 908 (967)
Q Consensus 842 d~L~~~lv~-LS~hkyGSrVIQkILE~csde~~----r~~LLdeLle~L~~L--------a~DqyGNYVVQ~ILe~~~pk 908 (967)
+.-. .-.. -..+..|...+..+......... ...+++.|++.-..+ +.|..|.-.+......+..+
T Consensus 161 ~~~~-~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 239 (260)
T 3jxi_A 161 ENGH-KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239 (260)
T ss_dssp HCSS-CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred hccc-cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence 3100 1111 23466777777777655432111 124555565554444 68899998888888887754
Q ss_pred HHHHHHH
Q 002096 909 ERSAIIK 915 (967)
Q Consensus 909 eRk~IIk 915 (967)
.-+.|++
T Consensus 240 ~v~~Ll~ 246 (260)
T 3jxi_A 240 IFQHIIR 246 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 28
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=38.06 E-value=1.6e+02 Score=30.40 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=5.5
Q ss_pred hhHHHHHHHhhc
Q 002096 857 GCRVIQRVLEHC 868 (967)
Q Consensus 857 GSrVIQkILE~c 868 (967)
|...+-.+|+..
T Consensus 86 G~~~~A~IlN~~ 97 (216)
T 4fhr_B 86 GIDTAAEIMNNL 97 (216)
T ss_dssp SHHHHHHHHHHS
T ss_pred cHHHHHHHHHcC
Confidence 344444455544
No 29
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=38.03 E-value=34 Score=34.16 Aligned_cols=168 Identities=16% Similarity=0.131 Sum_probs=84.4
Q ss_pred hccccchhHhhhhcc---CCHHHHHHHHHHHHhh--H---HHh---hhccccchhhhhhhhhcCHHHHHHHHHHHhhHHh
Q 002096 745 TDVFGNYVIQKFFEH---GTASQVRELADQLTGH--V---LTL---SLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIM 813 (967)
Q Consensus 745 tD~fGN~VVQKLLE~---~s~Eqr~~Iie~L~g~--I---veL---A~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il 813 (967)
.|..|.-.+...+.. +..+..+.|++.-... + +.. ..+..|.-.|..++.....+....|++. + ..
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g-a~ 115 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--G-AD 115 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--T-CC
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc--C-CC
Confidence 466777667666665 5555555555432110 0 000 0124566666666666555443333332 0 00
Q ss_pred Hhhccc-------------CCCchhhhhhhcCChhhHHHHHHHHHHHHH-HhhcCcchhHHHHHHHhhcC-CHHH---HH
Q 002096 814 RCVRDQ-------------NGNHVIQKCIECVPEDAIQFIVLTFYDQVV-TLSTHPYGCRVIQRVLEHCH-DEKT---QS 875 (967)
Q Consensus 814 ~Lv~Dq-------------nGNhVIQkLLE~~~~e~iq~IId~L~~~lv-~LS~hkyGSrVIQkILE~cs-de~~---r~ 875 (967)
.-..+. +|...+..++.....+..+.+++... +=. --..+..|.-.+..++.... ..+. ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~ 194 (256)
T 2etb_A 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH-QPASLEATDSLGNTVLHALVMIADNSPENSALVI 194 (256)
T ss_dssp TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHH
Confidence 011222 27777777777665554444443100 111 12345677777766665322 1111 11
Q ss_pred HHHHHHHHHHHHH--------hcCccHHHHHHHHHhcCCHHHHHHHHHH
Q 002096 876 IMMDEILQSVCML--------AQDQYGNYVVQHVLEHGKPHERSAIIKK 916 (967)
Q Consensus 876 ~LLdeLle~L~~L--------a~DqyGNYVVQ~ILe~~~pkeRk~IIk~ 916 (967)
.+++.|++.-..+ +.|..|...+......+..+.-+.|++.
T Consensus 195 ~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 2555555543333 6788999888888888775554444443
No 30
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=37.14 E-value=52 Score=33.28 Aligned_cols=125 Identities=12% Similarity=0.112 Sum_probs=72.3
Q ss_pred ccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHhh-cC--------------cchhHHHHHHHhhcCCHHHHHHHHHHHH
Q 002096 818 DQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLS-TH--------------PYGCRVIQRVLEHCHDEKTQSIMMDEIL 882 (967)
Q Consensus 818 DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~LS-~h--------------kyGSrVIQkILE~csde~~r~~LLdeLl 882 (967)
|.+|...+..++.....+..+.+++. -..+- .+ .+|...+........ ..+++.|+
T Consensus 98 d~~g~tpL~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll 168 (273)
T 2pnn_A 98 YYKGQTALHIAIERRNMTLVTLLVEN----GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ-----LAIVKFLL 168 (273)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC-----HHHHHHHH
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHHC----CCCcCccccccccccccccccccCCCCHHHHHHHcCC-----HHHHHHHH
Confidence 44677777777666655544444432 11111 11 146555555555432 23444544
Q ss_pred H---H-HHHHhcCccHHHHHHHHHhcCCH--HH---HHHHHHHHHHHHHHH--------hcCccHHHHHHHHHhhCCHHH
Q 002096 883 Q---S-VCMLAQDQYGNYVVQHVLEHGKP--HE---RSAIIKKLTGQIVQM--------SQQKFASNVIEKCLSFGTPAE 945 (967)
Q Consensus 883 e---~-L~~La~DqyGNYVVQ~ILe~~~p--ke---Rk~IIk~LkgnIveL--------S~nKfGS~VVEKcL~~~d~~e 945 (967)
+ . ...-+.|..|...+......+.. .. ...+++.|..+-..+ ..++.|.-.+..+...+..+.
T Consensus 169 ~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 169 QNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred hcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHH
Confidence 4 1 12235688898888888876642 11 246677777776666 378889888888888777665
Q ss_pred HHHHHH
Q 002096 946 RQALVN 951 (967)
Q Consensus 946 Rk~II~ 951 (967)
-+.+++
T Consensus 249 v~~Ll~ 254 (273)
T 2pnn_A 249 LAYILQ 254 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.76 E-value=20 Score=34.88 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=26.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHhhCCHHHHHHHH
Q 002096 893 YGNYVVQHVLEHGKPHERSAIIKKLTGQIVQM-SQQKFASNVIEKCLSFGTPAERQALV 950 (967)
Q Consensus 893 yGNYVVQ~ILe~~~pkeRk~IIk~LkgnIveL-S~nKfGS~VVEKcL~~~d~~eRk~II 950 (967)
.|...+..+...+..+ +++.|..+-..+ ..++.|...+..+...+..+.-+.++
T Consensus 176 ~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 176 HKNTALHWAVLAGNTT----VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp TCCCHHHHHHHHTCHH----HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 4555555555555433 333333321111 34556656666666665555444443
No 32
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=35.75 E-value=1.5e+02 Score=30.76 Aligned_cols=90 Identities=13% Similarity=0.252 Sum_probs=42.3
Q ss_pred hhhcCCHHHHHHHHHHHHH----HHHHhhhccccchhHhhhh--ccCCHHHHHHHHHHHHhhHHHhhhc----cccchhh
Q 002096 720 KLETATTEEKNMVFQEIMP----QALSLMTDVFGNYVIQKFF--EHGTASQVRELADQLTGHVLTLSLQ----MYGCRVI 789 (967)
Q Consensus 720 lLE~~S~Eer~~IfeEI~~----~lleLmtD~fGN~VVQKLL--E~~s~Eqr~~Iie~L~g~IveLA~h----kyGcrVL 789 (967)
+|+...+.....|+..+.+ .++...-...-.-|+.++. +..+++-.+.|-+.|...+...... .-|...+
T Consensus 11 ~l~~EhPQ~iA~iLs~L~~~~AA~VL~~Lp~~~~~ev~~Ria~l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~ 90 (216)
T 4fhr_B 11 FLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTA 90 (216)
T ss_dssp HHTTSCHHHHHHHHHTSCHHHHHHHHHTSCGGGHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHH
T ss_pred HHHcCCHHHHHHHHHhCCHHHHHHHHHHCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHH
Confidence 4444444444444443322 1222333333444444433 3345665555555555444333221 2345556
Q ss_pred hhhhhhcCHHHHHHHHHHHh
Q 002096 790 QKAIEVVELDQQTQMVKELD 809 (967)
Q Consensus 790 QklLE~as~eq~~~Lv~EL~ 809 (967)
-.++...+......+++.|.
T Consensus 91 A~IlN~~~~~~e~~il~~L~ 110 (216)
T 4fhr_B 91 AEIMNNLDRTTEKKIMDKLV 110 (216)
T ss_dssp HHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHH
Confidence 66666666666666666554
No 33
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=34.66 E-value=5e+02 Score=28.53 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=29.6
Q ss_pred cCChhhHHHHHHHHHHHHHHhh----cCcchhHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002096 831 CVPEDAIQFIVLTFYDQVVTLS----THPYGCRVIQRVLEHCHDEKTQSIMMDEILQ 883 (967)
Q Consensus 831 ~~~~e~iq~IId~L~~~lv~LS----~hkyGSrVIQkILE~csde~~r~~LLdeLle 883 (967)
..+++..+.|-+.+...+..+. ...-|...+-.+|+.... ...+.|++.|.+
T Consensus 169 ~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~-~~e~~il~~L~~ 224 (329)
T 3hjl_A 169 NVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDK-ETRELILQSIGQ 224 (329)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCH-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCCh-HHHHHHHHHHHH
Confidence 3566666666555555554432 234567778888887643 333455555544
No 34
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=33.94 E-value=1.8e+02 Score=31.30 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHH
Q 002096 912 AIIKKLTGQIVQMSQQKFASNVIEKCL 938 (967)
Q Consensus 912 ~IIk~LkgnIveLS~nKfGS~VVEKcL 938 (967)
++++.+...+..|+.+..+...+.+|+
T Consensus 210 RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 210 RLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 566666666677777777777666665
No 35
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=33.86 E-value=6.8e+02 Score=31.53 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 002096 897 VVQHVLEHGKPH-ERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG 955 (967)
Q Consensus 897 VVQ~ILe~~~pk-eRk~IIk~LkgnIveLS~nKfGS~VVEKcL~~~d~~eRk~II~ELl~ 955 (967)
++..+-....+. .|..+++.+..-+.++-...| ..++..++.-.+.+.-..|+++++.
T Consensus 200 lls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy-~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 200 LLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDY-LTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCH-HHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333333333444 477888887777766532222 2233333333566666666666653
No 36
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.42 E-value=58 Score=34.44 Aligned_cols=149 Identities=14% Similarity=0.140 Sum_probs=68.3
Q ss_pred hccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhh---HHhH-------
Q 002096 745 TDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG---HIMR------- 814 (967)
Q Consensus 745 tD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g---~il~------- 814 (967)
.|.+|.-.+...+..+..+..+.|++.-. -.....|...+..++.....+....|++.... ....
T Consensus 49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 123 (364)
T 3ljn_A 49 QNRFGCTALHLACKFGCVDTAKYLASVGE-----VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE 123 (364)
T ss_dssp CCTTCCCHHHHHHHHCCHHHHHHHHHHCC-----CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCC-----CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence 45566666666666665555555544322 11123455555555555555444444433110 0000
Q ss_pred --------hhcccCCCchhhhhhhcC--ChhhHHHHHHHHHHHHHH-hhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002096 815 --------CVRDQNGNHVIQKCIECV--PEDAIQFIVLTFYDQVVT-LSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ 883 (967)
Q Consensus 815 --------Lv~DqnGNhVIQkLLE~~--~~e~iq~IId~L~~~lv~-LS~hkyGSrVIQkILE~csde~~r~~LLdeLle 883 (967)
-..|..|...+..+.... ..+..+.+++. -.. -..+..|...+........ ..+++.|++
T Consensus 124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~ 194 (364)
T 3ljn_A 124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL----GASPTAKDKADETPLMRAMEFRN-----REALDLMMD 194 (364)
T ss_dssp CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHH
T ss_pred HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCC-----HHHHHHHHh
Confidence 014556666666666665 33333333332 111 1334455555555554432 123444443
Q ss_pred HHH------HHhcCccHHHHHHHHHhcCCH
Q 002096 884 SVC------MLAQDQYGNYVVQHVLEHGKP 907 (967)
Q Consensus 884 ~L~------~La~DqyGNYVVQ~ILe~~~p 907 (967)
.-. .-..|..|...+......+..
T Consensus 195 ~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 224 (364)
T 3ljn_A 195 TVPSKSSLRLDYANKQGNSHLHWAILINWE 224 (364)
T ss_dssp HCSCSSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred cccccccccccccCCCCCcHHHHHHHcCCH
Confidence 211 123455666655555555543
No 37
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=32.55 E-value=5.8e+02 Score=28.70 Aligned_cols=274 Identities=15% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhhHHHhhhcCcccccchHHHHHHHHHHHhhCcccCHHHHHhhh------cCCHHHHHHHHHH-HHHHHHHhhhccccc
Q 002096 678 SFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLE------TATTEEKNMVFQE-IMPQALSLMTDVFGN 750 (967)
Q Consensus 678 ~~~S~lLqef~snk~r~~~L~eI~G~IveLa~Dq~GSRVLQklLE------~~S~Eer~~IfeE-I~~~lleLmtD~fGN 750 (967)
....++|..-.++....++-..+...++++.....-..+...... .++.+++..|++. ..+.++.|..+....
T Consensus 98 ~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~ 177 (529)
T 3tpo_A 98 QAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH 177 (529)
T ss_dssp HHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred HHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Q ss_pred hhHhhh-----hccCCHHHHHHHHHH-HHhhHHHhhhccc-----------cchhhhhhhhhcCHHHHHHHHHHHhhHHh
Q 002096 751 YVIQKF-----FEHGTASQVRELADQ-LTGHVLTLSLQMY-----------GCRVIQKAIEVVELDQQTQMVKELDGHIM 813 (967)
Q Consensus 751 ~VVQKL-----LE~~s~Eqr~~Iie~-L~g~IveLA~hky-----------GcrVLQklLE~as~eq~~~Lv~EL~g~il 813 (967)
..-+.+ |-..+++.+..+++. ....++.+..... .++.+..+.....+......+..+.+.+.
T Consensus 178 v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 257 (529)
T 3tpo_A 178 ISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 257 (529)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHH
Q ss_pred HhhcccC------CCchhhhhhhcCChhhHHHHHHHHHHHHHHhhcCcchhHHHHHH-----HhhcCCHHHHHHHHHHHH
Q 002096 814 RCVRDQN------GNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRV-----LEHCHDEKTQSIMMDEIL 882 (967)
Q Consensus 814 ~Lv~Dqn------GNhVIQkLLE~~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkI-----LE~csde~~r~~LLdeLl 882 (967)
.|+.+.. +...+..+...........+-..+...++.+..+.........+ |-...+......+-...+
T Consensus 258 ~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l 337 (529)
T 3tpo_A 258 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 337 (529)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccH
Q ss_pred HHHHHHhcCccHHHHHHHHHhcC-----CHHHHHHHHHH-HHHHHHHHhcCcc------HHHHHHHHHhhCCHHHHHHHH
Q 002096 883 QSVCMLAQDQYGNYVVQHVLEHG-----KPHERSAIIKK-LTGQIVQMSQQKF------ASNVIEKCLSFGTPAERQALV 950 (967)
Q Consensus 883 e~L~~La~DqyGNYVVQ~ILe~~-----~pkeRk~IIk~-LkgnIveLS~nKf------GS~VVEKcL~~~d~~eRk~II 950 (967)
..+..|+.++.-.-..+.++..+ .+..+..+++. +.+.++.+..+.. +..++..+...++++.+..|+
T Consensus 338 ~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~ 417 (529)
T 3tpo_A 338 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLV 417 (529)
T ss_dssp GGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q ss_pred H
Q 002096 951 N 951 (967)
Q Consensus 951 ~ 951 (967)
+
T Consensus 418 ~ 418 (529)
T 3tpo_A 418 H 418 (529)
T ss_dssp H
T ss_pred H
No 38
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.43 E-value=83 Score=30.53 Aligned_cols=178 Identities=12% Similarity=0.023 Sum_probs=84.8
Q ss_pred cCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhh
Q 002096 713 GSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKA 792 (967)
Q Consensus 713 GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQkl 792 (967)
+...|......+..+....+++.-.. ..-..|..|.-.+...+..+..+..+.|++.= ..--..+..|.-.+..+
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGG--GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCSCCCCTTSCCHHHHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchh--hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC---CCCCCcCCCCCCHHHHH
Confidence 44556666666666655555543211 12234667777777777766655555554420 00112345566666666
Q ss_pred hhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHH-hhcCcchhHHHHHHHhhcCCH
Q 002096 793 IEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVT-LSTHPYGCRVIQRVLEHCHDE 871 (967)
Q Consensus 793 LE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~-LS~hkyGSrVIQkILE~csde 871 (967)
+.....+....|++. ....-..|..|...+..++.....+..+.+++. -.. -..+.+|...+........
T Consensus 81 ~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~-- 151 (231)
T 3aji_A 81 ASAGXDEIVKALLVK---GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG----GANPDAKDHYDATAMHRAAAKGN-- 151 (231)
T ss_dssp HHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHTC--
T ss_pred HHcCHHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCC--
Confidence 655554433333221 001112455666667666666555444444331 111 1234455555555554432
Q ss_pred HHHHHHHHHHHHHH-HHHhcCccHHHHHHHHHhcCCH
Q 002096 872 KTQSIMMDEILQSV-CMLAQDQYGNYVVQHVLEHGKP 907 (967)
Q Consensus 872 ~~r~~LLdeLle~L-~~La~DqyGNYVVQ~ILe~~~p 907 (967)
..+++.+++.- ..-..|..|...+......+..
T Consensus 152 ---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 185 (231)
T 3aji_A 152 ---LKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185 (231)
T ss_dssp ---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred ---HHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCH
Confidence 12333333321 1113456676666666666553
No 39
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.28 E-value=1.1e+02 Score=29.71 Aligned_cols=163 Identities=10% Similarity=0.036 Sum_probs=77.3
Q ss_pred ccccchhHhhhhccCCHHHHHHHHHHHHhhHHH--hhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhH---------
Q 002096 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLT--LSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMR--------- 814 (967)
Q Consensus 746 D~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~Ive--LA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~--------- 814 (967)
|..|.-.+...+..+..+..+.|++.-..-... -..+..|...+..++.....+....|++.-. .+..
T Consensus 34 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~~~~ 112 (232)
T 2rfa_A 34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA-SVSARATGSVFHY 112 (232)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCCSGGGSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCC-CCCcccCCcceee
Confidence 555665666566555555444444432111000 1233455555555555555443333332200 0000
Q ss_pred --hhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHH-hhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHHHHH----
Q 002096 815 --CVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVT-LSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCM---- 887 (967)
Q Consensus 815 --Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~-LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~L~~---- 887 (967)
-..|.+|...+..++.....+..+.+++. -.. -..+..|...+..++..... +....+++.+++.-..
T Consensus 113 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~~~~-~~~~~i~~~Ll~~g~~~~~~ 187 (232)
T 2rfa_A 113 RPHNLIYYGEHPLSFAACVGSEEIVRLLIEH----GADIRAQDSLGNTVLHILILQPNK-TFACQMYNLLLSYDGGDHLK 187 (232)
T ss_dssp CTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHTCSCH-HHHHHHHHHHHHTTCSCSSC
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcCCh-HHHHHHHHHHHhcCCchhhh
Confidence 00122566666666666555544444432 111 23456777777766665432 2222344444442111
Q ss_pred ---HhcCccHHHHHHHHHhcCCHHHHHHHH
Q 002096 888 ---LAQDQYGNYVVQHVLEHGKPHERSAII 914 (967)
Q Consensus 888 ---La~DqyGNYVVQ~ILe~~~pkeRk~II 914 (967)
-..|..|...+......+..+.-+.|+
T Consensus 188 ~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll 217 (232)
T 2rfa_A 188 SLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217 (232)
T ss_dssp CGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hhhccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 366788888888888777644433333
No 40
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.63 E-value=20 Score=35.14 Aligned_cols=61 Identities=3% Similarity=-0.044 Sum_probs=27.1
Q ss_pred cCccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHhhCCHHHHHHHHHHHh
Q 002096 890 QDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQM-SQQKFASNVIEKCLSFGTPAERQALVNEML 954 (967)
Q Consensus 890 ~DqyGNYVVQ~ILe~~~pkeRk~IIk~LkgnIveL-S~nKfGS~VVEKcL~~~d~~eRk~II~ELl 954 (967)
.|..|...+...+..+..+ +++.|..+-..+ ..++.|.-.+..+...+....-.+++++|.
T Consensus 173 ~~~~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 173 VNIHGDSPLHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CCTTCCCHHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555544432 233332221111 235555555555544444444445555543
No 41
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=27.63 E-value=63 Score=33.29 Aligned_cols=17 Identities=6% Similarity=-0.066 Sum_probs=8.1
Q ss_pred cCccHHHHHHHHHhcCC
Q 002096 890 QDQYGNYVVQHVLEHGK 906 (967)
Q Consensus 890 ~DqyGNYVVQ~ILe~~~ 906 (967)
.|..|...+......+.
T Consensus 243 ~~~~g~t~L~~A~~~g~ 259 (351)
T 3utm_A 243 KNKDFMTPLHVAAERAH 259 (351)
T ss_dssp CCTTCCCHHHHHHHTTC
T ss_pred cCCCCCCHHHHHHHcCC
Confidence 34455545544444444
No 42
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=26.37 E-value=74 Score=30.71 Aligned_cols=190 Identities=8% Similarity=-0.023 Sum_probs=95.0
Q ss_pred ccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchh
Q 002096 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVI 825 (967)
Q Consensus 746 D~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVI 825 (967)
|..|.-.+...+.++..+..+.|++.- ...-..+..|...+..++.....+....|++.- ....-..+..|...+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~t~L 96 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPL 96 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT--TSCTTCCCTTCCCHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCcHH
Confidence 445555555555555555444444321 001123456666666666665554433333321 001123456777777
Q ss_pred hhhhhcCChhhHHHHHHHHHHHHHH-hhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHHh
Q 002096 826 QKCIECVPEDAIQFIVLTFYDQVVT-LSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQS-VCMLAQDQYGNYVVQHVLE 903 (967)
Q Consensus 826 QkLLE~~~~e~iq~IId~L~~~lv~-LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~-L~~La~DqyGNYVVQ~ILe 903 (967)
..++.....+..+.+++ +-.. -..+..|...+..++.... ..+++.+++. ...-..|..|...+.....
T Consensus 97 ~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 167 (223)
T 2f8y_A 97 ILAARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNN-----VDAAVVLLKNGANKDMQNNREETPLFLAAR 167 (223)
T ss_dssp HHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHH----cCCCCcCcCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCcCCCCcCHHHHHHH
Confidence 77777665554444443 2111 1335566666666655432 1234444432 1112456778777777777
Q ss_pred cCCHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHhhCCHHHHHHHHHHHhcCC
Q 002096 904 HGKPHERSAIIKKLTGQIVQM-SQQKFASNVIEKCLSFGTPAERQALVNEMLGSI 957 (967)
Q Consensus 904 ~~~pkeRk~IIk~LkgnIveL-S~nKfGS~VVEKcL~~~d~~eRk~II~ELl~~~ 957 (967)
.+..+ +++.|..+-... ..++.|...+..+...+..+ |++-|+...
T Consensus 168 ~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----i~~~L~~~g 214 (223)
T 2f8y_A 168 EGSYE----TAKVLLDHFANRDITDHMDRLPRDIAQERMHHD----IVRLLDEYN 214 (223)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTT
T ss_pred cCCHH----HHHHHHHcCCCCccccccCCCHHHHHHHhcchH----HHHHHHHcC
Confidence 66643 344433332222 34566766666666665544 455555443
No 43
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.23 E-value=79 Score=30.55 Aligned_cols=153 Identities=12% Similarity=0.010 Sum_probs=69.2
Q ss_pred hccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCch
Q 002096 745 TDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHV 824 (967)
Q Consensus 745 tD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhV 824 (967)
.|..|.-.+...+..+..+..+.|++.-...-.....+..|...+..++.....+....+++.-. ....-..+..|...
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~g~t~ 110 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL-KPDLNKITNQGVTC 110 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSS-CCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CcccccCCcCCCCH
Confidence 56677777777776666555555544321111111144556655655555554432222221100 01112345556666
Q ss_pred hhhhhhcCChhhHHHHHHHHHHHHHH-hhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHHH-H-HHhcCccHHHHHHHH
Q 002096 825 IQKCIECVPEDAIQFIVLTFYDQVVT-LSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSV-C-MLAQDQYGNYVVQHV 901 (967)
Q Consensus 825 IQkLLE~~~~e~iq~IId~L~~~lv~-LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~L-~-~La~DqyGNYVVQ~I 901 (967)
+..++.....+..+.+++. -.. -..+..|...+........ ..+++.+++.- . .-..|..|...+...
T Consensus 111 L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A 181 (228)
T 2dzn_A 111 LHLAVGKKWFEVSQFLIEN----GASVRIKDKFNQIPLHRAASVGS-----LKLIELLCGLGKSAVNWQDKQGWTPLFHA 181 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTC-----HHHHHHHHTTTCCCSCCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHhHHHHHHHc----CCCccccCCCCCCHHHHHHHcCC-----HHHHHHHHhcCcccccCcCCCCCCHHHHH
Confidence 6666665554444444332 111 1234455555555544432 12333333321 1 112456666666666
Q ss_pred HhcCCH
Q 002096 902 LEHGKP 907 (967)
Q Consensus 902 Le~~~p 907 (967)
+..+..
T Consensus 182 ~~~~~~ 187 (228)
T 2dzn_A 182 LAEGHG 187 (228)
T ss_dssp HHTTCH
T ss_pred HHcCCH
Confidence 665554
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=25.88 E-value=8.5e+02 Score=28.45 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002096 910 RSAIIKKLTG 919 (967)
Q Consensus 910 Rk~IIk~Lkg 919 (967)
|+.+++.+.+
T Consensus 751 r~~~l~~~~~ 760 (861)
T 2bpt_A 751 LEAVLDAYVG 760 (861)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 45
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=25.33 E-value=1e+03 Score=29.22 Aligned_cols=117 Identities=9% Similarity=0.085 Sum_probs=61.9
Q ss_pred HhhHHhHhhcccCCCchhhhhhhc-----CChhhHHHHHHHHHHHHHHhhcCc----chhHHHHHHHhhcCCHHHHHHHH
Q 002096 808 LDGHIMRCVRDQNGNHVIQKCIEC-----VPEDAIQFIVLTFYDQVVTLSTHP----YGCRVIQRVLEHCHDEKTQSIMM 878 (967)
Q Consensus 808 L~g~il~Lv~DqnGNhVIQkLLE~-----~~~e~iq~IId~L~~~lv~LS~hk----yGSrVIQkILE~csde~~r~~LL 878 (967)
+...+.+.+.......+.+.|++. .....|++|.+.....+..+.... ++..++-|+......... .+
T Consensus 256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~--si- 332 (778)
T 3opb_A 256 LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCI--NL- 332 (778)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTC--CH-
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcC--cH-
Confidence 444555555555555566777763 456667778777776666655432 233445554443322111 12
Q ss_pred HHHHHHHHHHhcC-ccH--HHHHHHHHhcC-CHHHHHHHHHH--HHHHHHHHhcC
Q 002096 879 DEILQSVCMLAQD-QYG--NYVVQHVLEHG-KPHERSAIIKK--LTGQIVQMSQQ 927 (967)
Q Consensus 879 deLle~L~~La~D-qyG--NYVVQ~ILe~~-~pkeRk~IIk~--LkgnIveLS~n 927 (967)
..+.+.+..+..+ ..+ .+.|+.+-... +++.|+.|.+. +...++++..+
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~ 387 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS 387 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC
Confidence 2233444433333 433 34444444433 57777777653 67778888775
No 46
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=24.61 E-value=4.1e+02 Score=28.08 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=29.0
Q ss_pred hHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhc
Q 002096 775 HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVR 817 (967)
Q Consensus 775 ~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~ 817 (967)
.|+.+....-|-++|-+++.+.+.+++..++..+..++..|++
T Consensus 72 ~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~ 114 (248)
T 2xes_A 72 HFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIK 114 (248)
T ss_dssp HHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHH
T ss_pred ceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhh
Confidence 3555556666777777777777777777777777666666653
No 47
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.10 E-value=79 Score=29.95 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=63.1
Q ss_pred ccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchh
Q 002096 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVI 825 (967)
Q Consensus 746 D~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVI 825 (967)
|..|.-.+...+..+..+..+.|++.= ..--..+..|...+..++.....+....+++.-. ...-..|.+|...+
T Consensus 36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~--~~~~~~~~~g~t~L 110 (201)
T 3hra_A 36 DTEGNTPLNIAVHNNDIEIAKALIDRG---ADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT--PDLNKHNRYGGNAL 110 (201)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC--CCTTCCCTTSCCSH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccC--cccccccCCCCcHH
Confidence 445555555555555544444443320 0001233445555555555544443333332210 01122455566666
Q ss_pred hhhhhcCChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHHhc
Q 002096 826 QKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQS-VCMLAQDQYGNYVVQHVLEH 904 (967)
Q Consensus 826 QkLLE~~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~-L~~La~DqyGNYVVQ~ILe~ 904 (967)
..++.....+..+.+++.-. ...-..+..|...+...+...........+++.|++. ...-..|..|...+......
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 188 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGR--EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCC--CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCC--CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Confidence 66665555444444333210 0111234455555555544433222122344444332 11123445555555555544
Q ss_pred CC
Q 002096 905 GK 906 (967)
Q Consensus 905 ~~ 906 (967)
+.
T Consensus 189 ~~ 190 (201)
T 3hra_A 189 GY 190 (201)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 48
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=23.50 E-value=78 Score=31.56 Aligned_cols=25 Identities=4% Similarity=0.238 Sum_probs=12.5
Q ss_pred cccCCCchhhhhhhcCChhhHHHHH
Q 002096 817 RDQNGNHVIQKCIECVPEDAIQFIV 841 (967)
Q Consensus 817 ~DqnGNhVIQkLLE~~~~e~iq~II 841 (967)
.+..|...+..++.....+..+.++
T Consensus 154 ~~~~g~t~L~~A~~~g~~~~v~~Ll 178 (282)
T 1oy3_D 154 ENYDGHTPLHVAVIHKDAEMVRLLR 178 (282)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCcCHHHHHHHcCCHHHHHHHH
Confidence 3455655565555554444333333
No 49
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=23.13 E-value=5.2e+02 Score=27.59 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=78.4
Q ss_pred ccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccCCHHHHHHHHHHH---HhhHHHhhhccccchh
Q 002096 712 YGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQL---TGHVLTLSLQMYGCRV 788 (967)
Q Consensus 712 ~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L---~g~IveLA~hkyGcrV 788 (967)
.|.-|+..+=.+..+.++..|...|..-..+|..+--.|..||+-++...++....++..= ...+.+|+.
T Consensus 26 gg~lfl~il~nW~e~~dkkIi~SQIVSfY~klfe~lkdn~~iq~si~~ik~~l~~~f~n~s~~K~~df~~l~k------- 98 (258)
T 1fyh_A 26 NGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTN------- 98 (258)
T ss_dssp SCCSSHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-------
T ss_pred CCcchHHHHHhhhhcccceeHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHc-------
Confidence 4566666444444556677777778888888888877888888877654333211111100 112222222
Q ss_pred hhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHhhcC-cchhHHHHHHHhh
Q 002096 789 IQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTH-PYGCRVIQRVLEH 867 (967)
Q Consensus 789 LQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~LS~h-kyGSrVIQkILE~ 867 (967)
+.+-+...+.+-+.||...+- ..|+|+=-.+++ . ++.++.++-.--.+ --|-.++-+++..
T Consensus 99 ----~~v~d~~vQrkAi~EL~~VM~-----~sG~y~q~~~~k-----e----Ie~LK~yfNasn~Dv~dggplFl~ilkn 160 (258)
T 1fyh_A 99 ----YSVTDLNVQRKAIDELIQVMA-----ELGANVSGEFVK-----E----AENLKKYFNAGHSDVADNGTLFLGILKN 160 (258)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHH-----HTTCCCCHHHHH-----H----HHHHHHHHC-------CCCCSSHHHHHH
T ss_pred ----cCCCcHHHHHHHHHHHHHHHH-----HcCcccchhHHH-----H----HHHHHHHhccCCccccCCCcchHHhhhh
Confidence 123445555666666653322 234443222221 1 23334333211000 1244556666666
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Q 002096 868 CHDEKTQSIMMDEILQSVCMLAQ 890 (967)
Q Consensus 868 csde~~r~~LLdeLle~L~~La~ 890 (967)
+..+..++.|+..|++....|..
T Consensus 161 wkee~dkkIi~SQIvs~Y~KlFe 183 (258)
T 1fyh_A 161 WKEESDRKIMQSQIVSFYFKLFK 183 (258)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhhHHHHHHHHHHHHHH
Confidence 66666667777777776555443
No 50
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=22.49 E-value=1.2e+02 Score=29.99 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=7.8
Q ss_pred ccCCCchhhhhhhcCC
Q 002096 818 DQNGNHVIQKCIECVP 833 (967)
Q Consensus 818 DqnGNhVIQkLLE~~~ 833 (967)
|..|...+..++....
T Consensus 179 ~~~g~t~l~~a~~~~~ 194 (285)
T 1wdy_A 179 DNMGRNALIHALLSSD 194 (285)
T ss_dssp CTTSCCHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHccc
Confidence 4445555555554444
No 51
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=21.61 E-value=7.3e+02 Score=31.25 Aligned_cols=19 Identities=0% Similarity=-0.148 Sum_probs=8.0
Q ss_pred hhhhhhcCChhhHHHHHHH
Q 002096 825 IQKCIECVPEDAIQFIVLT 843 (967)
Q Consensus 825 IQkLLE~~~~e~iq~IId~ 843 (967)
++.++.....+.+..|++.
T Consensus 237 ~~~ai~LnD~~li~~if~~ 255 (963)
T 4ady_A 237 NKVVVNLNDAGLALQLFKK 255 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444443
No 52
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.54 E-value=91 Score=29.50 Aligned_cols=155 Identities=8% Similarity=0.048 Sum_probs=82.4
Q ss_pred hccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHhhcCcchhHH
Q 002096 781 LQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860 (967)
Q Consensus 781 ~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~LS~hkyGSrV 860 (967)
.+..|...+..++.....+....|++. ....-..+..|...+..++.....+..+.+++... ...-..+..|...
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~--~~~~~~~~~g~t~ 109 (201)
T 3hra_A 35 VDTEGNTPLNIAVHNNDIEIAKALIDR---GADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT--PDLNKHNRYGGNA 109 (201)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC--CCTTCCCTTSCCS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccC--cccccccCCCCcH
Confidence 345666666666666555443333332 01112356677777777777766655555543211 0111234455555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHH--HHHhcCccHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH-hcCccHHHHHHH
Q 002096 861 IQRVLEHCHDEKTQSIMMDEILQSV--CMLAQDQYGNYVVQHVLEHGK-PHERSAIIKKLTGQIVQM-SQQKFASNVIEK 936 (967)
Q Consensus 861 IQkILE~csde~~r~~LLdeLle~L--~~La~DqyGNYVVQ~ILe~~~-pkeRk~IIk~LkgnIveL-S~nKfGS~VVEK 936 (967)
+........ ..+++.|++.- ..-..|.+|...+......+. ......+++.|..+=..+ ..++.|.-.+..
T Consensus 110 L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 184 (201)
T 3hra_A 110 LIPAAEKGH-----IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184 (201)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHcCC-----HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHH
Confidence 555554432 13444444431 223457788888887777765 334456666665543322 356667666666
Q ss_pred HHhhCCHHH
Q 002096 937 CLSFGTPAE 945 (967)
Q Consensus 937 cL~~~d~~e 945 (967)
+...+..+.
T Consensus 185 A~~~~~~~~ 193 (201)
T 3hra_A 185 ANQKGYTEI 193 (201)
T ss_dssp HHHHTCHHH
T ss_pred HHHcCCHhH
Confidence 666665543
No 53
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.29 E-value=1.1e+02 Score=31.47 Aligned_cols=181 Identities=9% Similarity=-0.050 Sum_probs=80.6
Q ss_pred hhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccch
Q 002096 708 SADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCR 787 (967)
Q Consensus 708 a~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcr 787 (967)
..|..|.-.|......+..+..+.+++. ..---..|..|.-.+...+..+..+..+.|++. + ..--..+..|..
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g-a~~~~~~~~g~t 127 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQ---GWAVNIITADHVSPLHEACLGGHLSCVKILLKH--G-AQVNGVTADWHT 127 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHT---TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHT--T-CCSSCCCTTCCC
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--C-CCCCCCCCCCCC
Confidence 3666776667767777666544444431 011113455666666666666655544444432 0 001123445555
Q ss_pred hhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHh-hcCcchhHHHHHHHh
Q 002096 788 VIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTL-STHPYGCRVIQRVLE 866 (967)
Q Consensus 788 VLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~L-S~hkyGSrVIQkILE 866 (967)
.+..++.....+. ++.|..+-..+-.+..|...+..++.....+..+.+++ .-..+ ..+..|...+...+.
T Consensus 128 ~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~ 199 (285)
T 3d9h_A 128 PLFNACVSGSWDC----VNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA----YGGNIDHKISHLGTPLYLACE 199 (285)
T ss_dssp HHHHHHHHTCHHH----HHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHH----TTCCTTCCBTTTBCHHHHHHH
T ss_pred HHHHHHHcCHHHH----HHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHH
Confidence 5555554444332 22222221122223345555555555444333333322 11111 233445444444444
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCH
Q 002096 867 HCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKP 907 (967)
Q Consensus 867 ~csde~~r~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~p 907 (967)
... ..+++.|++.-..+-.|..|...+......+..
T Consensus 200 ~~~-----~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~ 235 (285)
T 3d9h_A 200 NQQ-----RACVKKLLESGADVNQGKGQDSPLHAVVRTASE 235 (285)
T ss_dssp TTC-----HHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCH
T ss_pred cCc-----HHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 322 123444444322233456666666666655543
No 54
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.27 E-value=1.5e+02 Score=28.58 Aligned_cols=145 Identities=10% Similarity=0.066 Sum_probs=73.3
Q ss_pred hCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccCCHHHHHHHHHHHHhhHHHh-hhccccch
Q 002096 709 ADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTL-SLQMYGCR 787 (967)
Q Consensus 709 ~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveL-A~hkyGcr 787 (967)
.|..|.-.|...+..+..+..+.+++. ..---..|..|.-.+...+.....+..+.|++. -.++ ..+..|..
T Consensus 36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t 108 (231)
T 3aji_A 36 TDQDSRTALHWACSAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK----GAHVNAVNQNGCT 108 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHh---CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHc----CCCCCCCCCCCCC
Confidence 356676677777777666555444432 000113456677677767666665544444432 1111 23556666
Q ss_pred hhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHh-hcCcchhHHHHHHHh
Q 002096 788 VIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTL-STHPYGCRVIQRVLE 866 (967)
Q Consensus 788 VLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~L-S~hkyGSrVIQkILE 866 (967)
.+..++.....+....+++. ....-..|.+|...+..++.....+..+.+++ +-..+ ..+..|...+...+.
T Consensus 109 ~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~ 181 (231)
T 3aji_A 109 PLHYAASKNRHEIAVMLLEG---GANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKASTNIQDTEGNTPLHLACD 181 (231)
T ss_dssp HHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCccccCCCCCCHHHHHHH
Confidence 67666666555433333321 01112345667777777776655554444433 11111 234455555555554
Q ss_pred h
Q 002096 867 H 867 (967)
Q Consensus 867 ~ 867 (967)
.
T Consensus 182 ~ 182 (231)
T 3aji_A 182 E 182 (231)
T ss_dssp T
T ss_pred C
Confidence 4
No 55
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=20.95 E-value=2.1e+02 Score=30.86 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=17.4
Q ss_pred CChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHhh
Q 002096 832 VPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEH 867 (967)
Q Consensus 832 ~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE~ 867 (967)
...+.+..|...+..-+..+..++ ..|++.+++.+
T Consensus 184 ~t~eRF~av~~vL~~mV~~l~~~p-s~RLLKhiirc 218 (268)
T 2fv2_A 184 QTYERFSHVAMILGKMVLQLSKEP-SARLLKHVVRC 218 (268)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTSC-CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 345544444444444444454443 45666665554
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.94 E-value=2.7e+02 Score=25.42 Aligned_cols=158 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhc
Q 002096 717 IQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVV 796 (967)
Q Consensus 717 LQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~a 796 (967)
|......+..+....+++. ...--..|..|...+...+..+..+..+.|++. ....-..+..|...+..++...
T Consensus 7 L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQ---ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN---GADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHH---SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHc---CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHcC
Q ss_pred CHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHH
Q 002096 797 ELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSI 876 (967)
Q Consensus 797 s~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~ 876 (967)
..+....+++. ....-..|.+|...+..++.....+..+.+++ .....-..+..|...+........ ..
T Consensus 81 ~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~-----~~ 149 (167)
T 3v31_A 81 YTDIVKMLLDC---GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE---SGADPTIETDSGYNSMDLAVALGY-----RS 149 (167)
T ss_dssp CHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTSCCHHHHHHHHTC-----HH
T ss_pred CHHHHHHHHHC---CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH---cCCCCCCcCCCCCCHHHHHHHcCc-----HH
Q ss_pred HHHHHHHHHHHHhcC
Q 002096 877 MMDEILQSVCMLAQD 891 (967)
Q Consensus 877 LLdeLle~L~~La~D 891 (967)
+++.|++....+...
T Consensus 150 ~~~~L~~~~~~~~~~ 164 (167)
T 3v31_A 150 VQQVIESHLLKLLQN 164 (167)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHH
No 57
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.13 E-value=1.2e+02 Score=31.14 Aligned_cols=175 Identities=7% Similarity=-0.069 Sum_probs=89.3
Q ss_pred hCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhccCCHHHHHHHHHHHHhhHHHhhhccccchh
Q 002096 709 ADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRV 788 (967)
Q Consensus 709 ~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~~s~Eqr~~Iie~L~g~IveLA~hkyGcrV 788 (967)
.|..|.-.|......+..+-.+.+++. ..---..|..|.-.+...+..+..+..+.|++ +-.++.....|...
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~g~t~ 160 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSCVKILLKH---GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ----HGASVQPESDLASP 160 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSSCSCTTSCH
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHH----CCCCCCCCCCCCCH
Confidence 355666666666666666544444332 01111346667777777776666554444443 22223334446666
Q ss_pred hhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHHHHHHHHHHHHHhhcCcchhHHHHHHHhhc
Q 002096 789 IQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHC 868 (967)
Q Consensus 789 LQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~IId~L~~~lv~LS~hkyGSrVIQkILE~c 868 (967)
+..++.....+....|++. ....-..|..|...+..++.....+..+.+++ .-..+-.+..|...+...+...
T Consensus 161 L~~A~~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~g~t~L~~A~~~~ 233 (285)
T 3d9h_A 161 IHEAARRGHVECVNSLIAY---GGNIDHKISHLGTPLYLACENQQRACVKKLLE----SGADVNQGKGQDSPLHAVVRTA 233 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT---TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTBCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHcC
Confidence 6666555554433333321 01112356778888888887766555544443 2233334667777776666654
Q ss_pred CCHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHH
Q 002096 869 HDEKTQSIMMDEILQS-VCMLAQDQYGNYVVQHVL 902 (967)
Q Consensus 869 sde~~r~~LLdeLle~-L~~La~DqyGNYVVQ~IL 902 (967)
.. .+++.|++. ...-+.|..|.-.+..+.
T Consensus 234 ~~-----~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 234 SE-----ELACLLMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp CH-----HHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred CH-----HHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence 31 344444442 112245666655544433
Done!