Query 002097
Match_columns 967
No_of_seqs 634 out of 5112
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.4E-76 8.3E-81 720.0 45.2 670 22-891 50-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 3E-70 1E-74 666.3 43.7 674 1-856 57-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-57 1.3E-61 547.2 50.1 580 225-891 25-635 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-56 4.2E-61 542.7 49.6 590 198-860 25-627 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-53 3.9E-58 525.9 42.8 549 225-893 24-594 (844)
6 3t6q_A CD180 antigen; protein- 100.0 3.3E-51 1.1E-55 488.4 46.6 514 254-859 34-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-51 4.2E-56 492.1 39.6 516 225-835 33-564 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-51 1.4E-55 503.1 45.1 532 228-886 7-567 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-50 1.7E-54 478.3 42.2 518 226-860 33-563 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 6.6E-50 2.2E-54 477.2 37.6 534 255-886 13-565 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 5.8E-46 2E-50 440.2 38.8 490 254-860 29-536 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1E-44 3.5E-49 427.1 33.4 488 224-860 4-515 (549)
13 4eco_A Uncharacterized protein 100.0 5.8E-46 2E-50 441.6 21.2 361 413-859 193-604 (636)
14 2z63_A TOLL-like receptor 4, v 100.0 7.7E-44 2.6E-48 422.0 38.4 487 330-887 10-539 (570)
15 4eco_A Uncharacterized protein 100.0 4.7E-45 1.6E-49 433.8 17.4 445 379-882 82-603 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.5E-44 1.5E-48 418.2 24.2 457 228-860 3-486 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 3.6E-43 1.2E-47 422.5 30.5 380 437-883 435-870 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 5.8E-43 2E-47 412.1 31.1 467 225-835 26-514 (549)
19 4ecn_A Leucine-rich repeat pro 100.0 1.2E-42 4E-47 418.2 29.1 437 353-856 323-865 (876)
20 4g8a_A TOLL-like receptor 4; l 100.0 4.1E-41 1.4E-45 404.7 39.8 512 226-859 53-584 (635)
21 4g8a_A TOLL-like receptor 4; l 100.0 8.9E-41 3E-45 401.7 42.0 519 198-834 52-583 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 2E-42 6.7E-47 404.3 23.4 439 378-887 21-489 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.5E-41 2.9E-45 393.5 24.8 462 224-860 30-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.3E-39 4.5E-44 373.8 29.8 371 431-860 14-413 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-38 6E-43 373.7 24.9 436 378-885 31-516 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 1.2E-37 4E-42 357.6 31.1 373 454-884 12-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.5E-38 8.4E-43 358.9 25.0 262 252-611 10-271 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2E-36 6.9E-41 343.2 28.7 247 353-633 11-270 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 2.3E-36 7.9E-41 348.6 25.4 348 455-884 14-361 (477)
30 1o6v_A Internalin A; bacterial 100.0 1.8E-34 6E-39 331.0 32.6 347 401-857 44-390 (466)
31 1o6v_A Internalin A; bacterial 100.0 2.8E-34 9.7E-39 329.3 34.3 346 376-832 44-389 (466)
32 3o6n_A APL1; leucine-rich repe 100.0 1.5E-34 5.1E-39 323.9 27.0 335 475-883 44-378 (390)
33 2id5_A Lingo-1, leucine rich r 100.0 1.4E-34 4.7E-39 333.8 25.4 347 431-860 15-361 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-34 9.3E-39 326.0 26.2 357 373-861 37-393 (457)
35 3oja_B Anopheles plasmodium-re 100.0 4E-34 1.4E-38 338.1 27.1 335 475-883 50-384 (597)
36 3bz5_A Internalin-J, INLJ; leu 100.0 3.1E-33 1.1E-37 317.3 26.5 356 352-840 41-396 (457)
37 1ogq_A PGIP-2, polygalacturona 100.0 7.5E-34 2.6E-38 306.7 19.4 260 549-888 50-313 (313)
38 3o6n_A APL1; leucine-rich repe 100.0 5.1E-32 1.7E-36 303.4 28.7 335 426-859 44-378 (390)
39 4fmz_A Internalin; leucine ric 100.0 1.6E-31 5.5E-36 294.5 29.0 304 451-855 43-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 3.6E-31 1.2E-35 291.7 28.8 307 423-831 40-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.8E-31 6.1E-36 315.5 27.7 314 426-836 50-363 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 5E-32 1.7E-36 292.5 15.9 251 526-856 51-306 (313)
43 1xku_A Decorin; proteoglycan, 100.0 4E-30 1.4E-34 280.8 28.4 291 477-853 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 2E-30 6.7E-35 283.4 25.2 288 477-853 34-331 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-33 5.3E-38 324.0 -3.7 280 427-706 3-326 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-29 4E-34 277.2 27.0 251 453-715 34-286 (332)
47 1xku_A Decorin; proteoglycan, 100.0 2.3E-29 7.8E-34 274.8 27.7 230 477-714 53-284 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-32 5.8E-37 315.4 -3.6 390 379-836 4-445 (461)
49 2z66_A Variable lymphocyte rec 100.0 4.9E-28 1.7E-32 261.3 19.6 250 529-859 11-265 (306)
50 2z80_A TOLL-like receptor 2, v 100.0 1.8E-28 6.1E-33 270.3 15.1 283 475-860 30-319 (353)
51 2z80_A TOLL-like receptor 2, v 100.0 3E-28 1E-32 268.6 15.2 256 550-883 53-318 (353)
52 2z66_A Variable lymphocyte rec 99.9 9.2E-28 3.1E-32 259.1 15.1 169 640-861 121-293 (306)
53 3zyi_A Leucine-rich repeat-con 99.9 2.2E-26 7.7E-31 262.5 25.5 233 549-860 75-308 (452)
54 3zyj_A Leucine-rich repeat-con 99.9 2.9E-26 9.9E-31 260.6 26.0 252 527-860 45-297 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 3.3E-26 1.1E-30 261.1 26.0 252 551-884 56-308 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 3E-26 1E-30 260.5 25.2 251 502-834 44-295 (440)
57 1ozn_A Reticulon 4 receptor; N 99.9 9E-27 3.1E-31 248.4 19.6 89 771-859 154-242 (285)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-26 4.8E-31 246.9 20.4 253 528-861 14-267 (285)
59 3ogk_B Coronatine-insensitive 99.9 3.6E-29 1.2E-33 297.5 -0.3 378 400-833 109-528 (592)
60 3ogk_B Coronatine-insensitive 99.9 1E-28 3.6E-33 293.4 1.7 412 394-857 64-528 (592)
61 4fcg_A Uncharacterized protein 99.9 2.3E-26 7.8E-31 249.5 19.4 234 524-854 80-313 (328)
62 4fcg_A Uncharacterized protein 99.9 3.1E-26 1.1E-30 248.5 20.0 226 500-807 80-314 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-27 5.6E-32 257.9 7.2 246 548-860 33-281 (317)
64 1wwl_A Monocyte differentiatio 99.9 1.5E-27 5.3E-32 257.5 5.0 81 771-856 229-310 (312)
65 1wwl_A Monocyte differentiatio 99.9 4.6E-27 1.6E-31 253.7 6.8 134 471-610 38-186 (312)
66 3oja_A Leucine-rich immune mol 99.9 1.7E-26 5.8E-31 264.5 11.5 235 549-850 34-270 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-27 1.1E-31 255.6 3.8 268 478-837 12-282 (317)
68 3oja_A Leucine-rich immune mol 99.9 3.8E-26 1.3E-30 261.6 12.2 234 502-826 35-270 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-24 7.3E-29 251.5 26.7 268 453-842 41-308 (622)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-24 9E-29 250.7 25.9 268 476-865 40-307 (622)
71 2z62_A TOLL-like receptor 4, v 99.9 7.4E-24 2.5E-28 224.6 20.6 209 574-860 29-242 (276)
72 2p1m_B Transport inhibitor res 99.9 2.3E-27 7.8E-32 282.1 -7.5 207 399-607 101-324 (594)
73 2p1m_B Transport inhibitor res 99.9 3.2E-26 1.1E-30 272.2 -1.6 111 449-560 429-542 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 2.7E-23 9.3E-28 220.3 20.4 212 549-835 28-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5.3E-27 213.4 23.8 186 621-860 38-223 (270)
76 2o6q_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 211.0 24.2 206 550-835 17-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 2.8E-22 9.7E-27 212.9 21.2 180 621-858 32-211 (290)
78 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4E-27 214.5 17.5 208 569-864 37-244 (272)
79 3rfs_A Internalin B, repeat mo 99.9 6.3E-23 2.2E-27 216.5 14.4 228 525-842 19-246 (272)
80 1p9a_G Platelet glycoprotein I 99.9 1.5E-21 5.2E-26 207.3 21.5 203 472-706 6-208 (290)
81 3m19_A Variable lymphocyte rec 99.9 2.5E-21 8.5E-26 201.7 19.3 163 645-860 35-197 (251)
82 2ca6_A RAN GTPase-activating p 99.9 2.9E-23 9.9E-28 231.7 2.1 167 640-859 117-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 3.9E-23 1.3E-27 228.1 2.8 68 771-838 226-304 (362)
84 3goz_A Leucine-rich repeat-con 99.9 8.7E-23 3E-27 225.3 4.0 261 530-859 3-301 (362)
85 2xwt_C Thyrotropin receptor; s 99.9 3.5E-21 1.2E-25 199.1 15.7 131 550-706 32-169 (239)
86 1h6u_A Internalin H; cell adhe 99.9 2.8E-21 9.5E-26 207.6 15.2 193 547-832 39-231 (308)
87 2xwt_C Thyrotropin receptor; s 99.9 3.9E-21 1.3E-25 198.8 14.6 197 573-852 31-236 (239)
88 2ast_B S-phase kinase-associat 99.8 3.1E-22 1E-26 219.2 6.1 165 641-862 138-313 (336)
89 2ca6_A RAN GTPase-activating p 99.8 7.4E-23 2.5E-27 228.4 0.2 138 645-835 159-320 (386)
90 2ast_B S-phase kinase-associat 99.8 3.1E-22 1.1E-26 219.2 4.9 234 526-840 71-315 (336)
91 4glp_A Monocyte differentiatio 99.8 2.1E-21 7.2E-26 209.3 11.0 159 643-856 143-308 (310)
92 3m19_A Variable lymphocyte rec 99.8 4.8E-20 1.7E-24 191.9 20.3 161 621-835 36-196 (251)
93 4glp_A Monocyte differentiatio 99.8 4.7E-21 1.6E-25 206.5 12.4 56 771-831 252-307 (310)
94 1h6u_A Internalin H; cell adhe 99.8 6.3E-20 2.2E-24 197.0 16.6 196 569-857 37-232 (308)
95 4ay9_X Follicle-stimulating ho 99.8 1.8E-19 6.1E-24 197.6 18.9 242 430-703 12-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 2.3E-19 8E-24 196.7 16.7 206 479-713 12-222 (350)
97 2o6s_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 178.5 15.6 160 644-863 27-186 (208)
98 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 205.4 14.9 115 574-707 60-174 (571)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-19 1.1E-23 181.0 13.4 157 648-860 14-171 (220)
100 2v9t_B SLIT homolog 2 protein 99.8 7.7E-19 2.6E-23 178.2 13.7 156 648-859 14-169 (220)
101 2o6s_A Variable lymphocyte rec 99.8 1.8E-18 6.3E-23 174.3 15.4 161 502-670 29-190 (208)
102 3cvr_A Invasion plasmid antige 99.8 3.1E-18 1.1E-22 196.9 17.4 194 550-817 60-253 (571)
103 2v9t_B SLIT homolog 2 protein 99.8 4.5E-18 1.5E-22 172.5 14.8 158 672-885 14-171 (220)
104 2xot_A Amphoterin-induced prot 99.8 3.8E-18 1.3E-22 187.8 14.4 162 645-859 39-206 (361)
105 2xot_A Amphoterin-induced prot 99.8 3E-18 1E-22 188.6 13.4 181 648-884 21-207 (361)
106 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.7E-22 171.0 16.3 157 647-860 21-177 (229)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 8.2E-18 2.8E-22 170.6 14.5 158 672-885 14-172 (220)
108 1m9s_A Internalin B; cell inva 99.7 1.9E-17 6.5E-22 192.9 15.1 150 522-707 40-189 (605)
109 3e6j_A Variable lymphocyte rec 99.7 5.1E-17 1.7E-21 166.0 16.3 157 670-883 20-176 (229)
110 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4E-22 177.6 11.9 145 526-706 25-169 (291)
111 1h6t_A Internalin B; cell adhe 99.7 4.6E-17 1.6E-21 172.9 16.2 172 594-856 43-214 (291)
112 1w8a_A SLIT protein; signaling 99.7 3.1E-17 1.1E-21 162.4 12.1 111 771-883 55-166 (192)
113 1m9s_A Internalin B; cell inva 99.7 1.5E-16 5.1E-21 185.3 18.1 198 477-715 22-219 (605)
114 1w8a_A SLIT protein; signaling 99.7 6.5E-17 2.2E-21 160.1 12.8 175 648-882 11-186 (192)
115 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.6E-21 158.8 12.9 155 641-856 40-195 (197)
116 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.1E-24 208.2 -10.0 77 771-849 487-567 (567)
117 1xeu_A Internalin C; cellular 99.7 1.2E-16 4.2E-21 166.8 11.3 168 622-858 21-188 (263)
118 3sb4_A Hypothetical leucine ri 99.7 2E-16 6.8E-21 171.8 12.1 76 771-848 251-327 (329)
119 1xeu_A Internalin C; cellular 99.7 2.8E-16 9.6E-21 164.0 11.6 176 523-713 17-192 (263)
120 3sb4_A Hypothetical leucine ri 99.6 2.2E-16 7.5E-21 171.4 10.7 284 475-825 24-328 (329)
121 4ezg_A Putative uncharacterize 99.6 5.7E-16 1.9E-20 154.3 11.5 151 451-610 43-194 (197)
122 1dce_A Protein (RAB geranylger 99.6 6E-17 2E-21 187.6 1.5 153 513-700 397-567 (567)
123 2wfh_A SLIT homolog 2 protein 99.6 2.3E-15 7.7E-20 148.8 11.6 89 771-859 55-143 (193)
124 4fdw_A Leucine rich hypothetic 99.6 3.8E-14 1.3E-18 156.7 21.6 77 527-606 159-235 (401)
125 4fdw_A Leucine rich hypothetic 99.6 4E-14 1.4E-18 156.6 21.6 241 550-854 136-382 (401)
126 4b8c_D Glucose-repressible alc 99.6 2.5E-16 8.6E-21 188.4 3.9 224 525-831 173-404 (727)
127 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 146.0 9.5 85 771-855 72-160 (168)
128 4fs7_A Uncharacterized protein 99.6 4.5E-14 1.5E-18 157.3 21.2 324 450-846 69-392 (394)
129 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 142.2 13.8 90 771-860 53-142 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 9.9E-15 3.4E-19 144.2 13.0 115 771-886 32-146 (193)
131 2ell_A Acidic leucine-rich nuc 99.6 5E-15 1.7E-19 143.3 10.7 139 643-837 22-165 (168)
132 4b8c_D Glucose-repressible alc 99.6 3.9E-16 1.3E-20 186.8 3.3 144 467-615 215-359 (727)
133 2je0_A Acidic leucine-rich nuc 99.6 5E-15 1.7E-19 140.1 9.6 80 771-850 65-148 (149)
134 2je0_A Acidic leucine-rich nuc 99.6 3.8E-15 1.3E-19 140.9 7.5 129 644-827 16-149 (149)
135 2o6r_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 138.9 13.8 133 647-835 9-141 (177)
136 4fs7_A Uncharacterized protein 99.5 1.7E-13 5.8E-18 152.6 20.7 327 399-823 67-393 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 9.2E-14 3.1E-18 135.4 9.4 66 640-708 14-79 (176)
138 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4.2E-20 152.0 -6.4 156 641-856 14-186 (198)
139 3g39_A Variable lymphocyte rec 99.4 5.1E-13 1.8E-17 128.9 12.1 90 771-860 31-120 (170)
140 1a9n_A U2A', U2A'; complex (nu 99.4 2.8E-13 9.6E-18 131.9 9.9 134 665-856 15-154 (176)
141 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 125.4 12.0 90 771-860 34-123 (174)
142 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 125.6 11.2 110 771-883 10-119 (170)
143 4gt6_A Cell surface protein; l 99.4 4.4E-11 1.5E-15 133.1 23.0 147 454-607 66-215 (394)
144 4gt6_A Cell surface protein; l 99.3 9.7E-11 3.3E-15 130.2 24.0 226 469-715 107-332 (394)
145 2r9u_A Variable lymphocyte rec 99.3 4.2E-12 1.4E-16 122.8 11.2 109 772-883 14-122 (174)
146 1ds9_A Outer arm dynein; leuci 99.3 1.6E-14 5.3E-19 144.0 -6.2 154 522-706 15-185 (198)
147 2ifg_A High affinity nerve gro 99.2 1.5E-11 5.2E-16 134.5 10.1 110 771-883 32-145 (347)
148 3un9_A NLR family member X1; l 99.2 1.7E-12 5.8E-17 142.0 -0.6 164 645-856 72-253 (372)
149 2ifg_A High affinity nerve gro 99.2 7.3E-11 2.5E-15 129.0 10.7 109 773-884 11-121 (347)
150 3un9_A NLR family member X1; l 99.2 5.5E-12 1.9E-16 138.0 1.7 195 46-267 72-284 (372)
151 4h09_A Hypothetical leucine ri 99.1 9.3E-09 3.2E-13 113.7 23.7 144 640-841 212-355 (379)
152 4h09_A Hypothetical leucine ri 99.0 2E-08 6.9E-13 111.0 22.6 297 452-851 46-342 (379)
153 2ra8_A Uncharacterized protein 98.6 4.2E-08 1.4E-12 106.1 7.3 188 39-264 132-341 (362)
154 2ra8_A Uncharacterized protein 98.6 2E-08 6.8E-13 108.6 4.5 163 640-853 167-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 1.5E-07 5.3E-12 91.5 5.0 126 38-163 28-166 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 2.7E-07 9.1E-12 89.8 3.4 120 17-136 31-165 (185)
157 3rw6_A Nuclear RNA export fact 98.2 1.4E-06 4.7E-11 89.0 5.3 65 769-835 169-237 (267)
158 3rw6_A Nuclear RNA export fact 98.1 7E-07 2.4E-11 91.1 2.8 63 44-108 168-232 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.5E-11 83.0 2.6 83 47-133 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 3.4E-06 1.2E-10 79.4 3.2 85 71-159 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00069 2.4E-08 65.0 6.6 122 40-161 35-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0012 3.9E-08 63.5 6.9 53 116-168 64-118 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.3E-08 58.4 6.8 60 798-859 12-72 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0033 1.1E-07 56.3 6.4 58 773-832 11-69 (130)
165 2lz0_A Uncharacterized protein 50.2 14 0.00047 30.6 3.8 43 61-105 10-52 (100)
166 2lz0_A Uncharacterized protein 37.6 60 0.0021 26.6 5.8 40 542-582 13-52 (100)
167 2k1k_A Ephrin type-A receptor 25.6 24 0.00082 23.1 1.0 16 914-929 14-29 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-76 Score=720.00 Aligned_cols=670 Identities=31% Similarity=0.434 Sum_probs=400.2
Q ss_pred CCccEEECCCCccCcc---chhhhcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCcccccc--CccCCC
Q 002097 22 SKLKKLDLRGNLCNNS---ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSR--GYRGLR 96 (967)
Q Consensus 22 ~~L~~L~Ls~~~~~~~---~~~~l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~~l~ 96 (967)
.+++.|||+++.+.+. +++++.++++|+.++++.+.+. .++. .|+.+++|++|||++|.+.+..+ . .+++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~ 126 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCS 126 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGG-GGGGGGGCT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCC-ChHHHhCCC
Confidence 3566666666666655 5566666666666666666544 2222 34666666666666666554433 2 455555
Q ss_pred CccEEECCCCCCCCCchhhhhc-CCCCcccEEeccCCccccccccc-hhhcCCCCCcEEEcCCCCCchhhhhhhhccccc
Q 002097 97 KLKSLDLSGVGIRDGNKLLQSM-GSFPSLNTLHLESNNFTATLTTT-QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPS 174 (967)
Q Consensus 97 ~L~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~ 174 (967)
+|++|++++|.+ .+..+..+ .++++|++|++++|.+.+..... ..+.++++|++|++++|.+
T Consensus 127 ~L~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-------------- 190 (768)
T 3rgz_A 127 GLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-------------- 190 (768)
T ss_dssp TCCEEECCSSEE--ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE--------------
T ss_pred CCCEEECcCCcc--CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc--------------
Confidence 555555555554 22222222 44455555555555444332000 0033344444444443322
Q ss_pred chhhcccCcccccccCCCCCCCccccceecccccccccccchhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCC
Q 002097 175 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 254 (967)
Q Consensus 175 l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~ 254 (967)
.+..+. .. +++|++|++++|.+.+ .++ .+..+++
T Consensus 191 --------------------------------------~~~~~~--~~-l~~L~~L~Ls~n~l~~---~~~--~l~~l~~ 224 (768)
T 3rgz_A 191 --------------------------------------SGDVDV--SR-CVNLEFLDVSSNNFST---GIP--FLGDCSA 224 (768)
T ss_dssp --------------------------------------ESCCBC--TT-CTTCCEEECCSSCCCS---CCC--BCTTCCS
T ss_pred --------------------------------------cccCCc--cc-CCcCCEEECcCCcCCC---CCc--ccccCCC
Confidence 111111 11 4555555555555544 222 1555555
Q ss_pred CcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEec
Q 002097 255 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 334 (967)
Q Consensus 255 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 334 (967)
|++|++++|.+++..|..++.+++|++|++++|.+++.+|. . .+++|++|++++|++.+.++.
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~L~~n~l~~~ip~-------------- 287 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQYLSLAENKFTGEIPD-------------- 287 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCEEECCSSEEEESCCC--------------
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-ccCCCCEEECcCCccCCccCH--------------
Confidence 55555555555555555555555555555555555544443 1 445555555555544432221
Q ss_pred cCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccC-CCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCC
Q 002097 335 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH-QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 413 (967)
Q Consensus 335 s~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n 413 (967)
.+.. +++|++|++++|.+.+.+|..
T Consensus 288 --------------------------------------~~~~~~~~L~~L~Ls~n~l~~~~p~~---------------- 313 (768)
T 3rgz_A 288 --------------------------------------FLSGACDTLTGLDLSGNHFYGAVPPF---------------- 313 (768)
T ss_dssp --------------------------------------CSCTTCTTCSEEECCSSEEEECCCGG----------------
T ss_pred --------------------------------------HHHhhcCcCCEEECcCCcCCCccchH----------------
Confidence 1111 133444444444444444443
Q ss_pred cccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCC-CCCEEEccCCcCCCcc
Q 002097 414 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVI-FLQFLDLSNNKLTGEI 492 (967)
Q Consensus 414 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~i 492 (967)
+..+++|++|++++|.+.|.+|...+..+++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+
T Consensus 314 ---------~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 314 ---------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp ---------GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred ---------HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 344444455555555554455544333355555555555555555555555554 5555555555555544
Q ss_pred chhHhh-cCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccC
Q 002097 493 PDHLAM-CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN 571 (967)
Q Consensus 493 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 571 (967)
|..+.. .+++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|..+..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 444322 1345556666666555555555555566666666666665555555555666666666666665555655555
Q ss_pred CCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcC-CCcccEEEccCCcCcccCCcccccCCCCCcEE
Q 002097 572 LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 650 (967)
Q Consensus 572 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 650 (967)
+++|++|++++|++++.+|..+.++++|++|++++|++++.+|..+. +++|+.|++++|.+.+.+|. .+..+++|+.|
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L 543 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWL 543 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEE
Confidence 66666666666666555555566666666666666666555554433 44455555555555455554 55556666666
Q ss_pred ECcCccCCCCcchhhhCCCCCCEEEcCCC----------------------cCcccCChhccCCCCCCEEECCCCcCccc
Q 002097 651 DLSYNYLNGSIPDWIDGLSQLSHLNLAHN----------------------NLEGEVPIQLCRLNQLQLLDLSDNNLHGL 708 (967)
Q Consensus 651 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 708 (967)
++++|+++|.+|.++.....+..+++..+ .+.+..+..+..++.++.++++.|.+.|.
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 66666666666655554444333332221 12344455555666666677777777777
Q ss_pred CCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcc
Q 002097 709 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 788 (967)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 788 (967)
+|..+..+ +.|+.|||++|+++|.+|.
T Consensus 624 ~~~~~~~l-----------------------------------------------------~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 624 TSPTFDNN-----------------------------------------------------GSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CCCSCSSS-----------------------------------------------------BCCCEEECCSSCCBSCCCG
T ss_pred Cchhhhcc-----------------------------------------------------ccccEEECcCCcccccCCH
Confidence 77666553 4899999999999999999
Q ss_pred cccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCccccccc
Q 002097 789 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATF 868 (967)
Q Consensus 789 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~ 868 (967)
.|+++++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+..+++|++||+++|+++|.||.. ++|.++
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~ 729 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETF 729 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGS
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 899999
Q ss_pred CcccccCCcCCCCCCCCCCCCcC
Q 002097 869 NKSSYDGNPFLCGLPLPICRSLA 891 (967)
Q Consensus 869 ~~~~~~~n~~lc~~~l~~c~~~~ 891 (967)
...+|.|||++||.|+..|....
T Consensus 730 ~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 730 PPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp CGGGGCSCTEEESTTSCCCCSCC
T ss_pred CHHHhcCCchhcCCCCcCCCCCc
Confidence 99999999999999988886443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-70 Score=666.32 Aligned_cols=674 Identities=29% Similarity=0.410 Sum_probs=448.9
Q ss_pred CCCCCccccc--cccchhhhhcCCCccEEECCCCccCccchhhhcCCCCCCEEECCCCcCCCCCCh-hhhcCCCCCCEEE
Q 002097 1 MSGNEIDNLV--VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDA-KEFDSLSNLEELD 77 (967)
Q Consensus 1 l~~~~~~~~~--~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~i~~-~~~~~l~~L~~L~ 77 (967)
|+++++.|.. +| +++.++++|+.++++.+.+. ..|+.++++++|++|+|++|.+.+.+|. ..++++++|++|+
T Consensus 57 L~~~~l~g~~~~l~---~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 132 (768)
T 3rgz_A 57 LSSKPLNVGFSAVS---SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132 (768)
T ss_dssp CTTSCCCEEHHHHH---HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEE
T ss_pred CCCCCcCCccCccC---hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEE
Confidence 4566777641 33 36788899999999998764 3567899999999999999999976665 2569999999999
Q ss_pred cCCCCCCccccccCccCCCCccEEECCCCCCCCCchhhhh---cCCCCcccEEeccCCccccccccchhhcCCCCCcEEE
Q 002097 78 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQS---MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLT 154 (967)
Q Consensus 78 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~---l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~ 154 (967)
|++|.+.+..+...+.++++|++|++++|.+ .+..+.. +.++++|++|++++|.+.+.. .+..+++|++|+
T Consensus 133 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~ 206 (768)
T 3rgz_A 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSI--SGANVVGWVLSDGCGELKHLAISGNKISGDV----DVSRCVNLEFLD 206 (768)
T ss_dssp CCSSEEECCSSCCSCCCCTTCSEEECCSSCC--EEETHHHHHHTTCCTTCCEEECCSSEEESCC----BCTTCTTCCEEE
T ss_pred CcCCccCCcCCHHHhccCCCCCEEECCCCcc--CCcCChhhhhhccCCCCCEEECCCCcccccC----CcccCCcCCEEE
Confidence 9999998777633458999999999999998 4444444 889999999999999988654 347899999999
Q ss_pred cCCCCCchhhhhhhhcccccchhhcccCcccccccCCCCCCCccccceecccccccccccchhhhhhcccCcccEEecCC
Q 002097 155 LDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 234 (967)
Q Consensus 155 L~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 234 (967)
+++|.+.+.. + .+.++++|++|++ ++|.+.+.++..+.. +++|++|++++
T Consensus 207 Ls~n~l~~~~-------------------------~--~l~~l~~L~~L~L--s~n~l~~~~~~~l~~-l~~L~~L~Ls~ 256 (768)
T 3rgz_A 207 VSSNNFSTGI-------------------------P--FLGDCSALQHLDI--SGNKLSGDFSRAIST-CTELKLLNISS 256 (768)
T ss_dssp CCSSCCCSCC-------------------------C--BCTTCCSCCEEEC--CSSCCCSCHHHHTTT-CSSCCEEECCS
T ss_pred CcCCcCCCCC-------------------------c--ccccCCCCCEEEC--cCCcCCCcccHHHhc-CCCCCEEECCC
Confidence 9998765321 1 2566777777777 666677777776666 77777777777
Q ss_pred CCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccC-CCCcEEecccCcccCCCCcccccCCCCCcEEEcccCC
Q 002097 235 STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT-TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 313 (967)
Q Consensus 235 ~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 313 (967)
|.+.+ .++. ..+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|. .|+++++|++|++++|+
T Consensus 257 n~l~~---~~~~---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 257 NQFVG---PIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNN 329 (768)
T ss_dssp SCCEE---SCCC---CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSE
T ss_pred CcccC---ccCc---cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCc
Confidence 77654 3332 156677777777777776666666554 6777777777777666665 56667777777777666
Q ss_pred CCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCccc
Q 002097 314 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGE 393 (967)
Q Consensus 314 l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 393 (967)
+.+.++...+. .+++|++|++++|.+.+.
T Consensus 330 l~~~ip~~~l~---------------------------------------------------~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 330 FSGELPMDTLL---------------------------------------------------KMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp EEEECCHHHHT---------------------------------------------------TCTTCCEEECCSSEEEEC
T ss_pred ccCcCCHHHHh---------------------------------------------------cCCCCCEEeCcCCccCcc
Confidence 65443332222 333444444444444445
Q ss_pred CchHHhhcCC-CCcEEEccCCcccCcCCCCcCC--CCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcc
Q 002097 394 FPNWLLENNT-KLEFLYLVNDSLAGPFRLPIHS--HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 470 (967)
Q Consensus 394 ~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 470 (967)
+|..+. +++ +|++|++++|.+.+..+..+.. +++|++|++++| .+++.+|.
T Consensus 359 ~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-------------------------~l~~~~p~ 412 (768)
T 3rgz_A 359 LPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-------------------------GFTGKIPP 412 (768)
T ss_dssp CCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-------------------------EEEEECCG
T ss_pred ccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-------------------------ccccccCH
Confidence 555542 333 6666666666665544444333 444444444444 44444444
Q ss_pred cccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCC
Q 002097 471 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 550 (967)
Q Consensus 471 ~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 550 (967)
.++++++|++|++++|++++.+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.++++
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 455555555555555555444444332 2455555555555555555555555555555555555555555555555555
Q ss_pred CcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcC-CCcccEEEccC
Q 002097 551 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSK 629 (967)
Q Consensus 551 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~ 629 (967)
|++|++++|++++.+|.+++.+++|++|++++|++.+.+|..++.+++|+.|++++|+++|.+|..+. ...+..+.+..
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 55555555555555555555555555555555555555555555555555555555555555554332 22221111111
Q ss_pred CcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccC
Q 002097 630 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 709 (967)
Q Consensus 630 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 709 (967)
..-...+............... -.+.+..+..+..++.++.+++..|.+.|.+|..+..+++|+.|||++|+++|.+
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred cccccccccccccccccccccc---cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 0000000000000011111111 1244566777788888889999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCccc
Q 002097 710 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 789 (967)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 789 (967)
|..++.++ .|+.|+|++|+++|.+|..
T Consensus 649 p~~l~~l~-----------------------------------------------------~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 649 PKEIGSMP-----------------------------------------------------YLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CGGGGGCT-----------------------------------------------------TCCEEECCSSCCCSCCCGG
T ss_pred CHHHhccc-----------------------------------------------------cCCEEeCcCCccCCCCChH
Confidence 99887754 8999999999999999999
Q ss_pred ccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCc-Ccc
Q 002097 790 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN-LSG 856 (967)
Q Consensus 790 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~-l~~ 856 (967)
|+++++|+.|||++|+++|.+|..++.+++|++||+++|+++|.+|.. ..+.++....+.+|+ +.|
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999999999999999999999999999999999999975 445566667778886 444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-57 Score=547.19 Aligned_cols=580 Identities=20% Similarity=0.233 Sum_probs=433.3
Q ss_pred CcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCC
Q 002097 225 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 304 (967)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L 304 (967)
+++++|++++|.+++ +++.+|..+++|++|++++|.+.+..|..|+++++|++|++++|.++ .+|...|+++++|
T Consensus 25 ~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCC
Confidence 478888888888764 44456777888888888888888777888888888888888888887 6666568888888
Q ss_pred cEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEE
Q 002097 305 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 384 (967)
Q Consensus 305 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~ 384 (967)
++|++++|++.+ ++...+.++++|++|++++|.+... .+..+..+++|++|+
T Consensus 100 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 100 TELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSST---------------------------KLGTQVQLENLQELL 151 (680)
T ss_dssp SEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCC---------------------------CCCSSSCCTTCCEEE
T ss_pred CEEECCCCccCc-cChhHccccCCCCEEECCCCccccc---------------------------CchhhcccccCCEEE
Confidence 888888887763 4445667777777777777766542 233455667777777
Q ss_pred ccCCcCcccCchHHh-hcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhh--cCCCCcEEECcC
Q 002097 385 LSHIKMIGEFPNWLL-ENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD--ILPSLVYFNISM 461 (967)
Q Consensus 385 l~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~l~~ 461 (967)
+++|.+.+..+..+. ..+++|++|++++|.+.+..+..+..+++|+.++++++.+.+.....+.. ..++|++|++++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 777777665555431 24578888888888888777777778888888888887765322222111 136788888888
Q ss_pred CCCCCCCcccccCCCC--CCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccc
Q 002097 462 NALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 539 (967)
Q Consensus 462 n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 539 (967)
|.+++..|..|.+++. |++|++++|+++ .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|...+
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 8888877878877755 888888888887 4444445568888888888888888888888888888888888765443
Q ss_pred -----cCCc----cCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCcccc--CCCccccC--CCCCCEEeCcC
Q 002097 540 -----EIPQ----SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--PIPVEFCR--LDSLQILDISD 606 (967)
Q Consensus 540 -----~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~--l~~L~~L~L~~ 606 (967)
.+|. .|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .....|.. .++|+.|++++
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~ 390 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCC
Confidence 2222 67778888888888888888777788888888888888886432 22233333 25788888888
Q ss_pred CcCCcCCCCCcC-CCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCc--c
Q 002097 607 NNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--G 683 (967)
Q Consensus 607 n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~ 683 (967)
|++++..|..+. +++|+.|++++|.+.+.++...|.++++|++|++++|++.+..+..|..+++|++|++++|.+. +
T Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 888887777665 7788888888888887777667888888888888888888777788888888888888888876 5
Q ss_pred cCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccc
Q 002097 684 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 763 (967)
Q Consensus 684 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (967)
..|..+..+++|++|++++|++++..+..|..++
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~---------------------------------------------- 504 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE---------------------------------------------- 504 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------------------------------
T ss_pred cCCcccccCCCCCEEECCCCCCCcCChhhhcccc----------------------------------------------
Confidence 6777888888888888888888877777676543
Q ss_pred cchhhhcccceEECCCCcccCCCc--------ccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCC
Q 002097 764 YQGRVLSLLAGLDLSCNKLVGHIP--------PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 835 (967)
Q Consensus 764 ~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 835 (967)
+|++|++++|++++..+ ..|.++++|+.|+|++|+++...+..|+.+++|+.|||++|++++..+
T Consensus 505 -------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 505 -------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp -------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 78888888888875421 236778888888888888886656678888888888888888886666
Q ss_pred ccccCCCcCCeEecCCCcCccCCCCCcc-cccccCcccccCCcCCCCCCC-CCCCCcC
Q 002097 836 RQLVDLNTLAIFIVAYNNLSGKIPEWTA-QFATFNKSSYDGNPFLCGLPL-PICRSLA 891 (967)
Q Consensus 836 ~~l~~l~~L~~l~ls~N~l~~~~p~~~~-~~~~~~~~~~~~n~~lc~~~l-~~c~~~~ 891 (967)
..+..+++|+.|++++|++++..|..+. .+.++....+.+||+.|+|+. .|...|.
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 6677888888888888888877766544 567777778888888888875 4544443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-56 Score=542.70 Aligned_cols=590 Identities=23% Similarity=0.210 Sum_probs=405.9
Q ss_pred cccceecccccccccccchhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCC
Q 002097 198 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 277 (967)
Q Consensus 198 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 277 (967)
+++++|++ +++.+.+..+..+.. +++|++|++++|.+.+ +.+.++..+++|++|++++|.+++..+..|++++
T Consensus 25 ~~l~~L~L--s~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNL--THNQLRRLPAANFTR-YSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEEC--CSSCCCCCCGGGGGG-GTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEC--CCCCCCCcCHHHHhC-CCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 67888999 677777766666776 8999999999998875 4445778889999999999998877666789999
Q ss_pred CCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeE
Q 002097 278 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 357 (967)
Q Consensus 278 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 357 (967)
+|++|++++|+++ .+++..|+++++|++|++++|.+.+. ....+.++++|++|++++|.+++.+..........+|++
T Consensus 98 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 98 NLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp TCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 9999999999987 56655789999999999999988753 445677889999999999988775544333333457778
Q ss_pred EEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHh--hcCCCCcEEEccCCcccCcCCCCcCCCCC--ccEEE
Q 002097 358 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL--ENNTKLEFLYLVNDSLAGPFRLPIHSHKR--LRFLD 433 (967)
Q Consensus 358 L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~ 433 (967)
|++++| ...+..|..+..+.+|+.+++.++.+.+.....+. -..++|+.|++++|.+.+..+..+..++. |++|+
T Consensus 176 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 176 LELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 888444 44555566677777778887777765543322211 12356667777766666665555555433 66666
Q ss_pred ecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccc
Q 002097 434 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 513 (967)
Q Consensus 434 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 513 (967)
+++|.+.+..|..+ ..+++|++|++++|.+++..|..|.++++|++|++++|...+.++.. .+
T Consensus 255 Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~----------------~l 317 (680)
T 1ziw_A 255 LSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA----------------SL 317 (680)
T ss_dssp CTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------------C
T ss_pred CCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc----------------cc
Confidence 66666654333322 33556666666666666555666666666666666655433211100 00
Q ss_pred cccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCC--CCccccC--CCCCCEEECCCCccccCC
Q 002097 514 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK--IPRWLGN--LKGLQHIVMPKNHLEGPI 589 (967)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~--l~~L~~L~l~~n~l~~~~ 589 (967)
.......|..+++|++|++++|.+.+..+..|.++++|++|++++|.+... .+..+.. .++|+.|++++|++.+..
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence 000111344455555555555555555455555555555555555543211 1112221 135555566555555555
Q ss_pred CccccCCCCCCEEeCcCCcCCcCCCC-CcC-CCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCC--CCcchhh
Q 002097 590 PVEFCRLDSLQILDISDNNISGSLPS-CFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWI 665 (967)
Q Consensus 590 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~ 665 (967)
|..|..+++|+.|++++|.+.+.+|. .+. +++|++|++++|.+.+..+. .|..+++|+.|++++|.+. +..|.++
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-hhhcCcccccchhccccccccccCCccc
Confidence 55555555666666666655554442 222 55566666666655443333 7888999999999999886 5678899
Q ss_pred hCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCch
Q 002097 666 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 745 (967)
Q Consensus 666 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (967)
..+++|++|++++|++++..+..+.++++|++|++++|++++..+..+.....
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~--------------------------- 529 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI--------------------------- 529 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC---------------------------
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc---------------------------
Confidence 99999999999999999888888999999999999999998765443321100
Q ss_pred hhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEEC
Q 002097 746 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 825 (967)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 825 (967)
.....+++|++|+|++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|+|
T Consensus 530 ------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 530 ------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp ------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEEC
Confidence 00012458999999999999555557999999999999999999888888999999999999
Q ss_pred cCCcCcccCCcccc-CCCcCCeEecCCCcCccCCCC
Q 002097 826 SYNKLSGKIPRQLV-DLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 826 s~N~l~~~~p~~l~-~l~~L~~l~ls~N~l~~~~p~ 860 (967)
++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus 592 ~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999998888887 789999999999999999874
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-53 Score=525.86 Aligned_cols=549 Identities=22% Similarity=0.180 Sum_probs=371.4
Q ss_pred CcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCcccccc-CchhccCCCCcEEecccCcccCCCCcccccCCCC
Q 002097 225 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL-PWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 303 (967)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 303 (967)
+++++|+|++|.+++ +.+.+|..+++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|. .|.++++
T Consensus 24 ~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSS
T ss_pred CCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcc
Confidence 455555555555542 32334555555555555555333322 44555555555555555555533233 4555555
Q ss_pred CcEEEcccCCCCCCCCc-ccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccE
Q 002097 304 IEELRLSNNHFRIPVSL-EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 382 (967)
Q Consensus 304 L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~ 382 (967)
|++|++++|.+.+..+. ..+.++++|++|++++|.+. ....+..++++++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~--------------------------~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR--------------------------SLYLHPSFGKLNSLKS 152 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC--------------------------CCCCCGGGGTCSSCCE
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc--------------------------ccccchhHhhCCCCCE
Confidence 55555555555432221 12344444444444444332 2222345666677777
Q ss_pred EEccCCcCcccCchHHhhcC--CCCcEEEccCCcccCcCCCCcCCCCC------ccEEEecCCcCCcCCChhhhhcC--C
Q 002097 383 AELSHIKMIGEFPNWLLENN--TKLEFLYLVNDSLAGPFRLPIHSHKR------LRFLDVSNNNFQGHIPVEIGDIL--P 452 (967)
Q Consensus 383 L~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~l~~n~l~~~~~~~~~~~~--~ 452 (967)
|++++|.+.+..+..+ ..+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+.+.++..+...+ .
T Consensus 153 L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 7777777666655543 333 66677777777666655554444433 66666666665555554443321 3
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhc--CCCCcEEEcccccccccccccccCCccccce
Q 002097 453 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC--CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 530 (967)
Q Consensus 453 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 530 (967)
+++.+.+..+..... +..+.+. ......+.+ .++|+.|++++|.+.+..+..|..+++|+.|
T Consensus 232 ~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 295 (844)
T 3j0a_A 232 QAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295 (844)
T ss_dssp CBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred cccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence 444555443322110 1122333 222222322 3678899999998888888888888999999
Q ss_pred eccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCC
Q 002097 531 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 610 (967)
Q Consensus 531 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 610 (967)
++++|.+.+..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|.++++|+.|++++|.++
T Consensus 296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 99999988888888888999999999999998888888889999999999999988888888888999999999999887
Q ss_pred cCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCc-chhhhCCCCCCEEEcCCCcCcccCCh-h
Q 002097 611 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPI-Q 688 (967)
Q Consensus 611 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~ 688 (967)
+. +. .++|+.+++++|++. .+|. ...+++.|++++|++++.. +..+..+++|++|+|++|++++..+. .
T Consensus 376 ~i-~~---~~~L~~L~l~~N~l~-~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 376 TI-HF---IPSIPDIFLSGNKLV-TLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp CC-SS---CCSCSEEEEESCCCC-CCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred cc-cC---CCCcchhccCCCCcc-cccc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 43 22 678889999999886 4444 2468999999999998653 24566899999999999999865443 4
Q ss_pred ccCCCCCCEEECCCCcCcccCC-----CcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccc
Q 002097 689 LCRLNQLQLLDLSDNNLHGLIP-----SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 763 (967)
Q Consensus 689 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (967)
+..+++|+.|++++|.+++..+ ..|..
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~------------------------------------------------ 478 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEG------------------------------------------------ 478 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC------------------------------------------------
T ss_pred cccCCccccccCCCCccccccccccchhhhcC------------------------------------------------
Confidence 5678999999999999874433 22322
Q ss_pred cchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCc
Q 002097 764 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 843 (967)
Q Consensus 764 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 843 (967)
+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++.+|..+. ++|+.|||++|++++.+|..+ .+
T Consensus 479 -----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~ 548 (844)
T 3j0a_A 479 -----LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VS 548 (844)
T ss_dssp -----BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SS
T ss_pred -----cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CC
Confidence 44899999999999998998999999999999999999988888777 899999999999999999775 47
Q ss_pred CCeEecCCCcCccCCCCCcccccccCcccccCCcCCCCCCCC-CCCCcCCC
Q 002097 844 LAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATM 893 (967)
Q Consensus 844 L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l~-~c~~~~~~ 893 (967)
|+.+++++|++.|.++. ..|.. +....+..+|+.+.. .|..+...
T Consensus 549 L~~l~l~~Np~~C~c~~--~~f~~---~~~~~~~~~~~~~~~~~C~~p~~~ 594 (844)
T 3j0a_A 549 LSVLDITHNKFICECEL--STFIN---WLNHTNVTIAGPPADIYCVYPDSF 594 (844)
T ss_dssp CCEEEEEEECCCCSSSC--CSHHH---HHHHTTTTTCCCGGGCCCSSCSSS
T ss_pred cCEEEecCCCccccccc--HHHHH---HHHhcCcccccccccCccCCchhh
Confidence 88999999999998874 23322 233456667776655 77655443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-51 Score=488.42 Aligned_cols=514 Identities=21% Similarity=0.180 Sum_probs=309.2
Q ss_pred CCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEe
Q 002097 254 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 333 (967)
Q Consensus 254 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 333 (967)
++++|++++|.+++..|..|+++++|++|++++|++.+..|. .|.++++|++|++++|++.+ .....+.++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChh-hccCccccCeeeCCCCcccc-cChhhhcccccccEee
Confidence 455555555555555555555555555555555555532222 45555555555555555542 2223344445555555
Q ss_pred ccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcc-cCchHHhhcCCCCcEEEccC
Q 002097 334 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG-EFPNWLLENNTKLEFLYLVN 412 (967)
Q Consensus 334 ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~ 412 (967)
+++|.+..... ..+..+++|++|++++|.+.+ ..|.. ..+++|++|++++
T Consensus 112 L~~n~i~~l~~---------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 112 FIQTGISSIDF---------------------------IPLHNQKTLESLYLGSNHISSIKLPKG--FPTEKLKVLDFQN 162 (606)
T ss_dssp CTTSCCSCGGG---------------------------SCCTTCTTCCEEECCSSCCCCCCCCTT--CCCTTCCEEECCS
T ss_pred ccccCcccCCc---------------------------chhccCCcccEEECCCCcccccCcccc--cCCcccCEEEccc
Confidence 55444432211 112333444555555554444 22322 2367777777777
Q ss_pred CcccCcCCCCcCCCCCcc--EEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCC-
Q 002097 413 DSLAGPFRLPIHSHKRLR--FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT- 489 (967)
Q Consensus 413 n~l~~~~~~~~~~~~~L~--~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 489 (967)
|.+.+..+..+..+++|+ .|++++|.+.+..|.. +. ..+|++|++++|. ..+..+.++.+++...+....+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-FD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT-TT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT
T ss_pred CcccccChhhhhhhcccceeEEecCCCccCccChhH-hh-hccccccccCCch---hHHHHhhhccccchhheechhhcc
Confidence 777766666666666666 6777777776543333 32 2467777777665 33444444444443333322221
Q ss_pred ---CccchhHhhcCC--CCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCC
Q 002097 490 ---GEIPDHLAMCCV--NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK 564 (967)
Q Consensus 490 ---~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 564 (967)
..++...+.++. +|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+.++++|++|++++|++.+.
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG
T ss_pred ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC
Confidence 123333333332 5777777777777666666777777777777777776 5666677777777777777777766
Q ss_pred CCccccCCCCCCEEECCCCccccCCCc-cccCCCCCCEEeCcCCcCCcCC--CCCcC-CCcccEEEccCCcCcccCCccc
Q 002097 565 IPRWLGNLKGLQHIVMPKNHLEGPIPV-EFCRLDSLQILDISDNNISGSL--PSCFY-PLSIKQVHLSKNMLHGQLKEGT 640 (967)
Q Consensus 565 ~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~-~~~L~~L~l~~n~~~~~~~~~~ 640 (967)
.|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+. +++|++|++++|.+.+..+. .
T Consensus 317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~ 395 (606)
T 3t6q_A 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-A 395 (606)
T ss_dssp GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-T
T ss_pred chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-H
Confidence 666777777777777777776644443 3667777777777777776543 33333 66677777777766655444 6
Q ss_pred ccCCCCCcEEECcCccCCCCcc-hhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCC---Cccccc
Q 002097 641 FFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP---SCFDNT 716 (967)
Q Consensus 641 ~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~ 716 (967)
|..+++|+.|++++|++.+..| .++..+++|++|++++|.+.+..|..+..+++|++|++++|++++... ..+..
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~- 474 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT- 474 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-
Confidence 6666777777777777665544 336666777777777777766666666667777777777776654211 12222
Q ss_pred ccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCC
Q 002097 717 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 796 (967)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 796 (967)
+++|++|++++|++++..|..|..+++|
T Consensus 475 ----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 475 ----------------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp ----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ----------------------------------------------------CCCccEEECCCCccCccChhhhccccCC
Confidence 3367777777777776666667777777
Q ss_pred CEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCC
Q 002097 797 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 859 (967)
Q Consensus 797 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 859 (967)
+.|+|++|++++.+|..|+.+++| .||+++|++++..|..+..+++|+.+++++|+++|.++
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 777777777777777777777777 77777777776666666666777777777777776665
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-51 Score=492.10 Aligned_cols=516 Identities=21% Similarity=0.236 Sum_probs=434.1
Q ss_pred CcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCC
Q 002097 225 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 304 (967)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L 304 (967)
+.+++|++++|.+++ +++.+|..+++|++|++++|.+.+..|..|+++++|++|++++|++++..|. .|+++++|
T Consensus 33 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTC
T ss_pred CcCcEEEccCCccCc----CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccc
Confidence 378999999998874 5556888999999999999999888888999999999999999998854454 78999999
Q ss_pred cEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEE
Q 002097 305 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 384 (967)
Q Consensus 305 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~ 384 (967)
++|++++|++.+ +....+.++++|++|++++|.+..+. .|... .+++|+.|+
T Consensus 108 ~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~--------------------------~~~~~-~l~~L~~L~ 159 (606)
T 3t6q_A 108 KHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIK--------------------------LPKGF-PTEKLKVLD 159 (606)
T ss_dssp CEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCC--------------------------CCTTC-CCTTCCEEE
T ss_pred cEeeccccCccc-CCcchhccCCcccEEECCCCcccccC--------------------------ccccc-CCcccCEEE
Confidence 999999998884 33345778888888888888776432 12222 266788888
Q ss_pred ccCCcCcccCchHHhhcCCCCc--EEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCC
Q 002097 385 LSHIKMIGEFPNWLLENNTKLE--FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 462 (967)
Q Consensus 385 l~~~~~~~~~~~~~~~~~~~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 462 (967)
+++|.+.+..|.. ++.+++|+ .|++++|.+.+..+..+.. .+|+.|++++|.. ++..+ ..+.++....+...
T Consensus 160 L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~-~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 160 FQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIF-KGLKNSTIQSLWLG 233 (606)
T ss_dssp CCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHH-HHTTTCEEEEEECC
T ss_pred cccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHh-hhccccchhheech
Confidence 8888887665655 47899999 8999999999887776654 6899999999862 23222 23445444444333
Q ss_pred CCC-----CCCcccccCCC--CCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCc
Q 002097 463 ALD-----GSIPSSFGNVI--FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 535 (967)
Q Consensus 463 ~l~-----~~~~~~~~~l~--~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 535 (967)
.+. ...+..|..+. +|++|++++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccC
Confidence 222 23334455444 7999999999998 677777778999999999999998 67888999999999999999
Q ss_pred cccccCCccCcCCCCCcEEECcCCcCCCCCCc-cccCCCCCCEEECCCCccccCC--CccccCCCCCCEEeCcCCcCCcC
Q 002097 536 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPI--PVEFCRLDSLQILDISDNNISGS 612 (967)
Q Consensus 536 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~ 612 (967)
.+.+..|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+.
T Consensus 312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 99988888999999999999999999876665 5899999999999999998766 77899999999999999999988
Q ss_pred CCCCcC-CCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCccc---CChh
Q 002097 613 LPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE---VPIQ 688 (967)
Q Consensus 613 ~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~ 688 (967)
.|..+. +++|++|++++|.+.+..+...+..+++|++|++++|.+.+..|.++..+++|++|++++|++.+. .+..
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence 887776 889999999999999887776799999999999999999999999999999999999999999863 3467
Q ss_pred ccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhh
Q 002097 689 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 768 (967)
Q Consensus 689 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (967)
+..+++|++|++++|++++..|..|..++
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------------------------------------------------- 500 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLK--------------------------------------------------- 500 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTTCT---------------------------------------------------
T ss_pred hccCCCccEEECCCCccCccChhhhcccc---------------------------------------------------
Confidence 89999999999999999999988887644
Q ss_pred hcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCC
Q 002097 769 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 835 (967)
Q Consensus 769 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 835 (967)
.|++|+|++|++++..|..+..++.| .|++++|++++.+|..++.+++|+.|++++|++.+..+
T Consensus 501 --~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 501 --MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp --TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred --CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 89999999999999999999999999 99999999999999999999999999999999998665
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-51 Score=503.12 Aligned_cols=532 Identities=20% Similarity=0.216 Sum_probs=404.6
Q ss_pred cEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEE
Q 002097 228 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 307 (967)
Q Consensus 228 ~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L 307 (967)
+..+.+++.++. +|. ..+++++|+|++|.+++..|..|.++++|++|++++|...+.+++..|.++++|++|
T Consensus 7 ~~~dcs~~~L~~----vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNLTQ----VPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCSSC----CCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCCCCC----CCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 466777888774 443 346899999999999988888899999999999999977678866688999999999
Q ss_pred EcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccC
Q 002097 308 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH 387 (967)
Q Consensus 308 ~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~ 387 (967)
+|++|++.+. ....+.++++|++|++++|.+.+.... ..++..+++|+.|++++
T Consensus 79 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 79 DLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLK-------------------------DGYFRNLKALTRLDLSK 132 (844)
T ss_dssp ECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCST-------------------------TCCCSSCSSCCEEEEES
T ss_pred ECCCCcCccc-CHhHccCCcccCEeeCcCCCCCccccc-------------------------CccccccCCCCEEECCC
Confidence 9999988743 334566666666666666655421000 01233444555555555
Q ss_pred CcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcC--CCCcEEECcCCCCC
Q 002097 388 IKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL--PSLVYFNISMNALD 465 (967)
Q Consensus 388 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~l~ 465 (967)
|.+.+..+.. .+..+++|++|++++|.+.+..+..+.. + ++|+.|+++.|.+.
T Consensus 133 N~l~~~~~~~------------------------~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 133 NQIRSLYLHP------------------------SFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCCCCCCCCG------------------------GGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSC
T ss_pred Ccccccccch------------------------hHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccc
Confidence 5544433322 3445555555555555555444444332 2 46666666666666
Q ss_pred CCCcccccCCCC------CCEEEccCCcCCCccchhHhhc--CCCCcEEEccc---------ccccccccccccCC--cc
Q 002097 466 GSIPSSFGNVIF------LQFLDLSNNKLTGEIPDHLAMC--CVNLEFLSLSN---------NSLKGHIFSRIFSL--RN 526 (967)
Q Consensus 466 ~~~~~~~~~l~~------L~~L~L~~n~l~~~i~~~~~~~--l~~L~~L~L~~---------n~l~~~~~~~~~~l--~~ 526 (967)
+..|..++.+.+ |++|++++|.+++.++..+... ..+++.+.++. +.+.+.....|.++ ++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 555555554444 6777777776665555554432 24566666653 33444445555554 78
Q ss_pred ccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcC
Q 002097 527 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 606 (967)
Q Consensus 527 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 606 (967)
|+.|++++|.+.+..|..|..+++|++|+|++|++.+..|..|..+++|++|++++|.+.+..|..|.++++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 99999999999998899999999999999999999988899999999999999999999988899999999999999999
Q ss_pred CcCCcCCCCCcC-CCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccC
Q 002097 607 NNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 685 (967)
Q Consensus 607 n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 685 (967)
|.+.+..+..+. +++|+.|++++|.+.+ +..+++|+.|++++|+++ .+|.. ..+++.|++++|++++..
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLD 417 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSST
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCc
Confidence 999877777666 8899999999999863 344789999999999998 44543 568999999999998643
Q ss_pred -ChhccCCCCCCEEECCCCcCcccCCCcc-cccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccc
Q 002097 686 -PIQLCRLNQLQLLDLSDNNLHGLIPSCF-DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 763 (967)
Q Consensus 686 -~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (967)
+..+..+++|+.|+|++|++++..+... ..
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------------------------------------------ 449 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSE------------------------------------------------ 449 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCS------------------------------------------------
T ss_pred hhhhhhcCCccceeeCCCCccccccccccccc------------------------------------------------
Confidence 2345689999999999999987654322 11
Q ss_pred cchhhhcccceEECCCCccc-----CCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccc
Q 002097 764 YQGRVLSLLAGLDLSCNKLV-----GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 838 (967)
Q Consensus 764 ~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 838 (967)
+++|+.|+|++|.++ +..|..|.++++|+.|+|++|++++.+|..|..+++|+.|||++|++++..|..+
T Consensus 450 -----~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 450 -----NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp -----CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred -----CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 348999999999997 4455679999999999999999999999999999999999999999998777766
Q ss_pred cCCCcCCeEecCCCcCccCCCCCcccccccCcccccCCcCCCCCCCCC
Q 002097 839 VDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 886 (967)
Q Consensus 839 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l~~ 886 (967)
. ++|+.|++++|++++.+|.. +..+....+.+||+.|+|++.+
T Consensus 525 ~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 525 P--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELST 567 (844)
T ss_dssp C--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCCS
T ss_pred h--ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCcccccccHH
Confidence 5 89999999999999999874 4577778999999999998753
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-50 Score=478.31 Aligned_cols=518 Identities=21% Similarity=0.184 Sum_probs=317.3
Q ss_pred cccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCc
Q 002097 226 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 305 (967)
Q Consensus 226 ~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 305 (967)
++++|++++|.+++ +++.+|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|. .|+++++|+
T Consensus 33 ~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~ 107 (606)
T 3vq2_A 33 STKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLE 107 (606)
T ss_dssp TCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCC
T ss_pred CcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCC
Confidence 45555555555442 3333444555555555555555544444555555555555555555422232 455555555
Q ss_pred EEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEc
Q 002097 306 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 385 (967)
Q Consensus 306 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l 385 (967)
+|++++|++.+ .+...+.++++ |++|++++|......+|..++.+++|+.|++
T Consensus 108 ~L~L~~n~l~~-~~~~~~~~l~~--------------------------L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 108 NLVAVETKLAS-LESFPIGQLIT--------------------------LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp EEECTTSCCCC-SSSSCCTTCTT--------------------------CCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred EEEccCCcccc-ccccccCCCCC--------------------------CCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 55555555442 12122334444 4444443333223345666777777777777
Q ss_pred cCCcCcccCchHHhhcCCCC----cEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcC
Q 002097 386 SHIKMIGEFPNWLLENNTKL----EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 461 (967)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 461 (967)
++|.+.+..|..+ +.+++| .+|++++|.+.+..+..+... +|+.|++++|.+.+.........+++++.+++..
T Consensus 161 s~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 161 SYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp CSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred cCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 7777766544432 333333 367777777666555554443 6777777776665433333344456666666544
Q ss_pred CCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCC--CCcEEEc-ccccccccccccccCCccccceeccCcccc
Q 002097 462 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV--NLEFLSL-SNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 538 (967)
Q Consensus 462 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 538 (967)
+.+.+... +. .++...+..+. .++.+++ ..+.+.+..|. +..+++|+.|++++|.+.
T Consensus 239 ~~~~~~~~------------------l~-~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 298 (606)
T 3vq2_A 239 GEFKDERN------------------LE-IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK 298 (606)
T ss_dssp ECCTTSCC------------------CS-CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC
T ss_pred cccccCCc------------------cc-ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch
Confidence 33321100 00 01111111111 2344444 34444444444 555555555555555554
Q ss_pred ccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcC--CCCC
Q 002097 539 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS--LPSC 616 (967)
Q Consensus 539 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~ 616 (967)
.+| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|+.|++++|.+++. +|..
T Consensus 299 -~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~ 371 (606)
T 3vq2_A 299 -YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYS 371 (606)
T ss_dssp -CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred -hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhh
Confidence 233 455555555555555555 34442 2 5555555555555332222 344555555555555555433 1222
Q ss_pred c-CCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcc-hhhhCCCCCCEEEcCCCcCcccCChhccCCCC
Q 002097 617 F-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 694 (967)
Q Consensus 617 ~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 694 (967)
+ .+++|++|++++|.+.+ ++. .+..+++|+.|++++|++.+..| ..+..+++|++|++++|++.+..|..+..+++
T Consensus 372 ~~~~~~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAII-MSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HHCCSCCCEEECCSCSEEE-ECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred hccCCcccEeECCCCcccc-chh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 2 24455555555555443 343 78888999999999999988777 67888999999999999999888888999999
Q ss_pred CCEEECCCCcCcc-cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccc
Q 002097 695 LQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 773 (967)
Q Consensus 695 L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 773 (967)
|++|++++|++++ .+|..+..++ +|+
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~-----------------------------------------------------~L~ 476 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTT-----------------------------------------------------NLT 476 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCT-----------------------------------------------------TCC
T ss_pred CCEEECCCCcCCCcchHHhhccCC-----------------------------------------------------CCC
Confidence 9999999999887 4677666543 899
Q ss_pred eEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCC-cCCeEecCCC
Q 002097 774 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYN 852 (967)
Q Consensus 774 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~l~ls~N 852 (967)
+|++++|++++..|..|..+++|+.|+|++|++++.+|..|+.+++|+.||+++|+++ .+|..+..++ +|+++++++|
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 9999999999888888999999999999999999999999999999999999999998 6777788886 5999999999
Q ss_pred cCccCCCC
Q 002097 853 NLSGKIPE 860 (967)
Q Consensus 853 ~l~~~~p~ 860 (967)
++.|.++.
T Consensus 556 ~~~c~c~~ 563 (606)
T 3vq2_A 556 SVACICEH 563 (606)
T ss_dssp CCCCSSTT
T ss_pred CcccCCcc
Confidence 99998875
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.6e-50 Score=477.19 Aligned_cols=534 Identities=19% Similarity=0.164 Sum_probs=438.7
Q ss_pred CcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEec
Q 002097 255 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 334 (967)
Q Consensus 255 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 334 (967)
-++++.++++++. +|..+. +++++|++++|.++ .++...|.++++|++|++++|++.+ ++...+.++++|++|++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCccc-CCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeEC
Confidence 4678999988874 455443 78999999999998 5555579999999999999998874 44456778888888888
Q ss_pred cCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCc
Q 002097 335 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 414 (967)
Q Consensus 335 s~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 414 (967)
++|.+... .|..++.+++|++|++++|.+.+..+.. ++++++|++|++++|.
T Consensus 88 s~n~l~~~---------------------------~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 88 TGNPIQSF---------------------------SPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNF 139 (606)
T ss_dssp TTCCCCCC---------------------------CTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSC
T ss_pred CCCccccc---------------------------ChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCc
Confidence 87766542 3556778889999999999887655444 4789999999999999
Q ss_pred ccC-cCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCC----CcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCC
Q 002097 415 LAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS----LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 489 (967)
Q Consensus 415 l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~----L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 489 (967)
+.+ ..+..+..+++|++|++++|.+++..+..+.. +.+ ++++++++|.+++..+..+... +|++|++++|.++
T Consensus 140 l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS 217 (606)
T ss_dssp CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred ccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccc
Confidence 986 45778889999999999999998655544432 333 5589999999997666666555 8999999999887
Q ss_pred CccchhHhhcCCCCcEEEccccccccc------ccccccCCc--cccceec-cCccccccCCccCcCCCCCcEEECcCCc
Q 002097 490 GEIPDHLAMCCVNLEFLSLSNNSLKGH------IFSRIFSLR--NLRWLLL-EGNHFVGEIPQSLSKCSSLKGLYLNNNN 560 (967)
Q Consensus 490 ~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 560 (967)
+......+..+++++.+++..+.+.+. .+..+.++. .++.+++ ..|.+.+..|. +..+++|+.|++++|.
T Consensus 218 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 296 (606)
T 3vq2_A 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS 296 (606)
T ss_dssp HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC
T ss_pred hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCcc
Confidence 555555566789999988876654321 122222222 4566666 66778877776 8999999999999999
Q ss_pred CCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccC--Cc
Q 002097 561 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL--KE 638 (967)
Q Consensus 561 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~ 638 (967)
+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.+ ....+++|++|++++|.+.+.. +.
T Consensus 297 ~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~ 370 (606)
T 3vq2_A 297 IK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSY 370 (606)
T ss_dssp CC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCH
T ss_pred ch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhh
Confidence 97 566 889999999999999999 5677 55 9999999999999766555 3345889999999999987653 55
Q ss_pred ccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCC-hhccCCCCCCEEECCCCcCcccCCCcccccc
Q 002097 639 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 717 (967)
Q Consensus 639 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 717 (967)
.+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..++
T Consensus 371 -~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 371 -SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp -HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred -hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 78899999999999999985 66889999999999999999998877 6899999999999999999998888877644
Q ss_pred cccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccC-CCcccccCCCCC
Q 002097 718 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRI 796 (967)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L 796 (967)
+|++|++++|.+++ .+|..|+.+++|
T Consensus 449 -----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 449 -----------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp -----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred -----------------------------------------------------CCCEEECCCCcCCCcchHHhhccCCCC
Confidence 89999999999997 478899999999
Q ss_pred CEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCccccc-ccCcccccC
Q 002097 797 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA-TFNKSSYDG 875 (967)
Q Consensus 797 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~~~~~~~~~ 875 (967)
+.|+|++|.+++.+|..|+.+++|++|++++|++++.+|..+..+++|++|++++|+++ .+|.++..+. ++....+.+
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCS
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999 5776566665 488889999
Q ss_pred CcCCCCCCCCC
Q 002097 876 NPFLCGLPLPI 886 (967)
Q Consensus 876 n~~lc~~~l~~ 886 (967)
||+.|+|+..|
T Consensus 555 N~~~c~c~~~~ 565 (606)
T 3vq2_A 555 NSVACICEHQK 565 (606)
T ss_dssp CCCCCSSTTHH
T ss_pred CCcccCCccHH
Confidence 99999998753
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-46 Score=440.20 Aligned_cols=490 Identities=21% Similarity=0.277 Sum_probs=326.0
Q ss_pred CCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEe
Q 002097 254 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 333 (967)
Q Consensus 254 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 333 (967)
++++|++++|.+++..+..|.++++|++|++++|+++ .+++..|.++++|++|++++|++.+ ++...+..+++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 4566666666666555555666666666666666655 3443355666666666666665542 2223444555555555
Q ss_pred ccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcc-cCchHHhhcCCCCcEEEccC
Q 002097 334 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG-EFPNWLLENNTKLEFLYLVN 412 (967)
Q Consensus 334 ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~ 412 (967)
+++|.+...+.. .++.+++|++|++++|.+.+ .+|..+ +++++|++|++++
T Consensus 107 L~~n~l~~l~~~---------------------------~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~ 158 (570)
T 2z63_A 107 AVETNLASLENF---------------------------PIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSS 158 (570)
T ss_dssp CTTSCCCCSTTC---------------------------SCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTT
T ss_pred ccccccccCCCc---------------------------cccccccccEEecCCCccceecChhhh-cccCCCCEEeCcC
Confidence 555544322110 12233444444444444433 234332 3455555555555
Q ss_pred CcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCC----cEEECcCCCCCCCCcccccCCCCCCEEEccCCcC
Q 002097 413 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL----VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 488 (967)
Q Consensus 413 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 488 (967)
|.+.+..+..+.. +++| +++++++|.+++..|..|... +|++|++++|..
T Consensus 159 n~l~~~~~~~~~~-------------------------l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~ 212 (570)
T 2z63_A 159 NKIQSIYCTDLRV-------------------------LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212 (570)
T ss_dssp SCCCEECGGGGHH-------------------------HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS
T ss_pred CccceecHHHccc-------------------------hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccc
Confidence 5444333333333 3344 555666665555555555444 566666666543
Q ss_pred CCccchhHhhcCCCCcEEEccccccc------ccccccccCCc--cccceeccCc-cccccCCccCcCCCCCcEEECcCC
Q 002097 489 TGEIPDHLAMCCVNLEFLSLSNNSLK------GHIFSRIFSLR--NLRWLLLEGN-HFVGEIPQSLSKCSSLKGLYLNNN 559 (967)
Q Consensus 489 ~~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 559 (967)
....-......+++++.+.+....+. ......+.+++ .++.++++++ .+.+..|..+..+++|++|++++|
T Consensus 213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292 (570)
T ss_dssp CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence 32211222233555555444332211 11122222222 2456666666 566667777777788888888888
Q ss_pred cCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccC--C
Q 002097 560 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL--K 637 (967)
Q Consensus 560 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~--~ 637 (967)
.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+.. +
T Consensus 293 ~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~ 366 (570)
T 2z63_A 293 TIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCS 366 (570)
T ss_dssp EEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEE
T ss_pred cch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccccc
Confidence 777 567777777 8888888888776 3443 3577788888888877766555 45777888888888776543 3
Q ss_pred cccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCC-hhccCCCCCCEEECCCCcCcccCCCccccc
Q 002097 638 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 716 (967)
Q Consensus 638 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 716 (967)
. .+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..|..|..+
T Consensus 367 ~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 367 Q-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp H-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred c-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 3 678899999999999999865555 8899999999999999987665 568899999999999999998888777664
Q ss_pred ccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCccc-CCCcccccCCCC
Q 002097 717 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV-GHIPPQIGNLTR 795 (967)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~ 795 (967)
+ +|++|++++|.++ +.+|..+..+++
T Consensus 445 ~-----------------------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 445 S-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp T-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred C-----------------------------------------------------cCcEEECcCCcCccccchhhhhcccC
Confidence 4 8999999999997 578889999999
Q ss_pred CCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 796 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 796 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
|+.|+|++|++++..|..|+.+++|++|++++|++++..|..+..+++|+.+++++|+++|.+|.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999899999999999999999999988888899999999999999999999986
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-44 Score=427.07 Aligned_cols=488 Identities=20% Similarity=0.199 Sum_probs=310.0
Q ss_pred cCcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCC
Q 002097 224 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 303 (967)
Q Consensus 224 l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 303 (967)
|+.....+.+++.++. +|. .+. ++|++|++++|.+++..|..|.++++|++|++++|++++ +++..|.++++
T Consensus 4 C~~~~~c~~~~~~l~~----ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~ 75 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS----IPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGS 75 (549)
T ss_dssp ECTTSEEECTTSCCSS----CCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTT
T ss_pred CCCCceEECCCCcccc----ccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhcccccc
Confidence 3334445667777763 544 232 678888888888888778888888888888888888874 44447888888
Q ss_pred CcEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEE
Q 002097 304 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 383 (967)
Q Consensus 304 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L 383 (967)
|++|++++|++.+ .+...+.++++|++|++++|.+...
T Consensus 76 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------------------- 113 (549)
T 2z81_A 76 LEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL----------------------------------------- 113 (549)
T ss_dssp CCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSS-----------------------------------------
T ss_pred CCEEECCCCccCc-cCHHHhccCCCCcEEECCCCccccc-----------------------------------------
Confidence 8888888887763 2222233344444444433332210
Q ss_pred EccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCC
Q 002097 384 ELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 463 (967)
Q Consensus 384 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 463 (967)
..|.. ++++++|++|++++|. +.+.+|...+..+++|++|++++|.
T Consensus 114 ---------~~~~~-~~~l~~L~~L~L~~n~------------------------~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 114 ---------GVTSL-FPNLTNLQTLRIGNVE------------------------TFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ---------CSSCS-CTTCTTCCEEEEEESS------------------------SCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ---------chhhh-hhccCCccEEECCCCc------------------------cccccCHhhhhcccccCeeeccCCc
Confidence 11111 1344455555555554 3233333333334455555555555
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccc---cccccCCccccceeccCcccccc
Q 002097 464 LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI---FSRIFSLRNLRWLLLEGNHFVGE 540 (967)
Q Consensus 464 l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~ 540 (967)
+++..|..++.+++|++|+++.|.+. .+|..++..+++|++|++++|++.+.. ......+++|+.|++++|.+.+.
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 55445555555555555555555554 444444444555555555555554421 11122345555555555555432
Q ss_pred CC----ccCcCCCCCcEEECcCCcCCCCC------CccccCCCCCCEEECCCCccccC-----CCccccCCCCCCEEeCc
Q 002097 541 IP----QSLSKCSSLKGLYLNNNNLSGKI------PRWLGNLKGLQHIVMPKNHLEGP-----IPVEFCRLDSLQILDIS 605 (967)
Q Consensus 541 ~~----~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~ 605 (967)
.+ ..+..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+... .+..+...++|+.|+++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 22 22334455555555555544321 12234455666666665554321 11122334566777777
Q ss_pred CCcCCcCCCCCc--CCCcccEEEccCCcCcccCCc--ccccCCCCCcEEECcCccCCCCcc--hhhhCCCCCCEEEcCCC
Q 002097 606 DNNISGSLPSCF--YPLSIKQVHLSKNMLHGQLKE--GTFFNCSSLVTLDLSYNYLNGSIP--DWIDGLSQLSHLNLAHN 679 (967)
Q Consensus 606 ~n~l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n 679 (967)
+|.+. .+|..+ .+++|++|++++|.+.+.++. ..+..+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 319 ~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred cCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 77665 444433 266677777777776665532 246788999999999999986543 56889999999999999
Q ss_pred cCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccc
Q 002097 680 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 759 (967)
Q Consensus 680 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (967)
+++ .+|..+..+++|++|++++|++++... .+
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~---------------------------------------------- 429 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-CI---------------------------------------------- 429 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-TS----------------------------------------------
T ss_pred CCc-cCChhhcccccccEEECCCCCcccccc-hh----------------------------------------------
Confidence 998 678888999999999999999874322 11
Q ss_pred cccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCcccc
Q 002097 760 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 839 (967)
Q Consensus 760 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 839 (967)
.+.|++|++++|++++.+ ..+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+.
T Consensus 430 ---------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 430 ---------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp ---------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred ---------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 127999999999998653 57899999999999999 5665 46789999999999999999999999
Q ss_pred CCCcCCeEecCCCcCccCCCC
Q 002097 840 DLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 840 ~l~~L~~l~ls~N~l~~~~p~ 860 (967)
.+++|+.|++++|+++|.+|.
T Consensus 495 ~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCBCCCHHH
T ss_pred cCcccCEEEecCCCccCCCcc
Confidence 999999999999999999884
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-46 Score=441.65 Aligned_cols=361 Identities=19% Similarity=0.264 Sum_probs=221.8
Q ss_pred CcccCcCCCCcCCCCCccEEEecCCcCCcC-----------------CChhhh-hcCCCCcEEECcCCCCCCCCcccccC
Q 002097 413 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGH-----------------IPVEIG-DILPSLVYFNISMNALDGSIPSSFGN 474 (967)
Q Consensus 413 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----------------~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~ 474 (967)
|.+++ +|..+..+++|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..|++
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34444 344445555555555555555542 444433 12445555555555555555555555
Q ss_pred CCCCCEEEccCCc-CCC-ccchhHhh-----cCCCCcEEEcccccccccccc--cccCCccccceeccCccccccCCccC
Q 002097 475 VIFLQFLDLSNNK-LTG-EIPDHLAM-----CCVNLEFLSLSNNSLKGHIFS--RIFSLRNLRWLLLEGNHFVGEIPQSL 545 (967)
Q Consensus 475 l~~L~~L~L~~n~-l~~-~i~~~~~~-----~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~ 545 (967)
+++|++|++++|+ ++| .+|..+.. .+++|++|++++|.++ .+|. .+..+++|++|++++|.++|.+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 5555555555554 544 44444432 1144555555555554 3444 44444555555555555444444 44
Q ss_pred cCCCCCcEEECcCCcCCCCCCccccCCCC-CCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccE
Q 002097 546 SKCSSLKGLYLNNNNLSGKIPRWLGNLKG-LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 624 (967)
Q Consensus 546 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~ 624 (967)
..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..+. .++|+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~---------------------l~~L~~ 406 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS---------------------VSVMSA 406 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC---------------------SSCEEE
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc---------------------cCccCE
Confidence 44444555555544444 44444444444 444444444444 3343333322 113444
Q ss_pred EEccCCcCcccCCccccc-------CCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChh-ccCCC---
Q 002097 625 VHLSKNMLHGQLKEGTFF-------NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLN--- 693 (967)
Q Consensus 625 L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~--- 693 (967)
|++++|.+.+.+|. .+. .+++|++|+|++|+++...+..+..+++|++|+|++|+++ .+|.. +....
T Consensus 407 L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 407 IDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENF 484 (636)
T ss_dssp EECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEEC
T ss_pred EECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccc
Confidence 44444444444443 333 5678888999999888555556677888999999999888 45543 33332
Q ss_pred ----CCCEEECCCCcCcccCCCccc--ccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchh
Q 002097 694 ----QLQLLDLSDNNLHGLIPSCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 767 (967)
Q Consensus 694 ----~L~~L~Ls~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (967)
+|++|+|++|+++ .+|..+. .
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~---------------------------------------------------- 511 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATT---------------------------------------------------- 511 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTT----------------------------------------------------
T ss_pred cccCCccEEECcCCcCC-ccChhhhhcc----------------------------------------------------
Confidence 8999999999888 4554443 3
Q ss_pred hhcccceEECCCCcccCCCcccccCCCCCCEEEC------cCccccccCcccccCCCCCCEEECcCCcCcccCCccccCC
Q 002097 768 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL------SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 841 (967)
Q Consensus 768 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 841 (967)
+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..++.+++|++|||++|++ +.+|..+.
T Consensus 512 -l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-- 586 (636)
T 4eco_A 512 -LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-- 586 (636)
T ss_dssp -CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred -CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--
Confidence 3478999999999987 8888889999999999 56888889999999999999999999999 68888765
Q ss_pred CcCCeEecCCCcCccCCC
Q 002097 842 NTLAIFIVAYNNLSGKIP 859 (967)
Q Consensus 842 ~~L~~l~ls~N~l~~~~p 859 (967)
++|+.|++++|++.+.-+
T Consensus 587 ~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 587 PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TTCCEEECCSCTTCEEEC
T ss_pred CcCCEEECcCCCCccccH
Confidence 789999999998876443
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-44 Score=421.98 Aligned_cols=487 Identities=21% Similarity=0.189 Sum_probs=400.7
Q ss_pred cEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEE
Q 002097 330 KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLY 409 (967)
Q Consensus 330 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 409 (967)
..+++++..++.++... ...++.|++++| ...+..+..+..+++|++|++++|.+.+..|. .++++++|++|+
T Consensus 10 ~~~~c~~~~l~~ip~~l-----~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~ 82 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-----PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLI 82 (570)
T ss_dssp TEEECCSSCCSSCCSSS-----CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred cEEEeCCCCccccCCCc-----cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcc-cccCchhCCEEe
Confidence 34555555555554432 236899999555 44555566788999999999999987764444 457899999999
Q ss_pred ccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCC-CCcccccCCCCCCEEEccCCcC
Q 002097 410 LVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKL 488 (967)
Q Consensus 410 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l 488 (967)
+++|.+.+..+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++ .+|..|+++++|++|++++|++
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred CcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 99999998888889999999999999999984 554334458899999999999987 4688999999999999999999
Q ss_pred CCccchhHhhcCCCC----cEEEcccccccccccccccCCccccceeccCccccc-------------------------
Q 002097 489 TGEIPDHLAMCCVNL----EFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG------------------------- 539 (967)
Q Consensus 489 ~~~i~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------- 539 (967)
+ .++...+..+++| +.+++++|.+.+..+..+... +|+.|++++|....
T Consensus 162 ~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 162 Q-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp C-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred c-eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 8 5554444457777 899999999998888877665 79999998874221
Q ss_pred ------cCCccCcCCC--CCcEEECcCC-cCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCC
Q 002097 540 ------EIPQSLSKCS--SLKGLYLNNN-NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 610 (967)
Q Consensus 540 ------~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 610 (967)
.....+.++. .++.++++++ .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+.
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc
Confidence 1111122222 2455666666 667778889999999999999999998 578888888 9999999999998
Q ss_pred cCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCc--chhhhCCCCCCEEEcCCCcCcccCChh
Q 002097 611 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHNNLEGEVPIQ 688 (967)
Q Consensus 611 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~ 688 (967)
.+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. |..+.++++|++|++++|++.+..+.
T Consensus 318 -~l~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 391 (570)
T 2z63_A 318 -QFPT-LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN- 391 (570)
T ss_dssp -SCCB-CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-
T ss_pred -ccCc-ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-
Confidence 5555 4678999999999998776654 67899999999999998664 78899999999999999999865554
Q ss_pred ccCCCCCCEEECCCCcCcccCC-CcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchh
Q 002097 689 LCRLNQLQLLDLSDNNLHGLIP-SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 767 (967)
Q Consensus 689 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (967)
+..+++|++|++++|.+.+..| ..+..
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------------------------------------------- 419 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLS---------------------------------------------------- 419 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTT----------------------------------------------------
T ss_pred ccccCCCCEEEccCCccccccchhhhhc----------------------------------------------------
Confidence 9999999999999999987765 34444
Q ss_pred hhcccceEECCCCcccCCCcccccCCCCCCEEECcCcccc-ccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCe
Q 002097 768 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 846 (967)
Q Consensus 768 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 846 (967)
+++|++|++++|.+.+..|..|..+++|+.|++++|.++ +.+|..++.+++|++|++++|++++..|..+..+++|++
T Consensus 420 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 420 -LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp -CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 348999999999999999999999999999999999998 689999999999999999999999999999999999999
Q ss_pred EecCCCcCccCCCCCcccccccCcccccCCcCCCCCCCCCC
Q 002097 847 FIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 887 (967)
Q Consensus 847 l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l~~c 887 (967)
|++++|++++.+|..+..+..+....+.+||+.|.||..++
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 99999999998888778888999999999999999886544
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-45 Score=433.78 Aligned_cols=445 Identities=18% Similarity=0.228 Sum_probs=344.4
Q ss_pred CccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcC----------CCCcCCCCCccEEEecCCcCCcCCChhhh
Q 002097 379 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF----------RLPIHSHKRLRFLDVSNNNFQGHIPVEIG 448 (967)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 448 (967)
.++.|+++++.+.|.+|+.+ +++++|++|++++|.+.... ..+...+..++ ++++.+.+.+.+|..+.
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSC
T ss_pred CEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHH
Confidence 46666666666666666554 56666666666666541100 00000123444 55555555554444333
Q ss_pred hcCC------------------CCcEEEC--cCCCCCCCCcccccCCCCCCEEEccCCcCCCc-----------------
Q 002097 449 DILP------------------SLVYFNI--SMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE----------------- 491 (967)
Q Consensus 449 ~~~~------------------~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 491 (967)
..+. .++.+.+ ..|.+++ +|..++++++|++|++++|++++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 2111 1222222 2577887 888899999999999999998864
Q ss_pred cchhHh-hcCCCCcEEEcccccccccccccccCCccccceeccCcc-ccc-cCCccCcCC------CCCcEEECcCCcCC
Q 002097 492 IPDHLA-MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH-FVG-EIPQSLSKC------SSLKGLYLNNNNLS 562 (967)
Q Consensus 492 i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~ 562 (967)
+|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 787765 248899999999999888889889999999999999998 887 788777665 88999999999998
Q ss_pred CCCCc--cccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcC-CCc-ccEEEccCCcCcccCCc
Q 002097 563 GKIPR--WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLS-IKQVHLSKNMLHGQLKE 638 (967)
Q Consensus 563 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~-L~~L~l~~n~~~~~~~~ 638 (967)
.+|. .++++++|++|++++|++.|.+| .+..+++|+.|++++|.+. .+|..+. +++ |++|++++|.+. .+|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 7887 88899999999999999988888 8888899999999999988 6666555 677 999999999987 6776
Q ss_pred ccccCCC--CCcEEECcCccCCCCcchhhh-------CCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccC
Q 002097 639 GTFFNCS--SLVTLDLSYNYLNGSIPDWID-------GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 709 (967)
Q Consensus 639 ~~~~~~~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 709 (967)
.+..++ +|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|++|+|++|+++...
T Consensus 395 -~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 395 -IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp -CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred -hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 565544 899999999999999998888 7889999999999999554455667999999999999999544
Q ss_pred CCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCccc
Q 002097 710 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 789 (967)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 789 (967)
+..+.... .....+++|++|+|++|+++ .+|..
T Consensus 474 ~~~~~~~~----------------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 474 KNSLKDEN----------------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp SSSSEETT----------------------------------------------EECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred HHHhcccc----------------------------------------------ccccccCCccEEECcCCcCC-ccChh
Confidence 44443211 00011448999999999999 78888
Q ss_pred cc--CCCCCCEEECcCccccccCcccccCCCCCCEEEC------cCCcCcccCCccccCCCcCCeEecCCCcCccCCCCC
Q 002097 790 IG--NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL------SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 861 (967)
Q Consensus 790 ~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 861 (967)
+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 87 99999999999999998 8999999999999999 56889999999999999999999999999 788885
Q ss_pred cccccccCcccccCCcCCCCC
Q 002097 862 TAQFATFNKSSYDGNPFLCGL 882 (967)
Q Consensus 862 ~~~~~~~~~~~~~~n~~lc~~ 882 (967)
+ +.++....+.+|+..|-.
T Consensus 585 ~--~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 585 I--TPNISVLDIKDNPNISID 603 (636)
T ss_dssp C--CTTCCEEECCSCTTCEEE
T ss_pred H--hCcCCEEECcCCCCcccc
Confidence 3 378888899999998843
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-44 Score=418.15 Aligned_cols=457 Identities=20% Similarity=0.180 Sum_probs=279.6
Q ss_pred cEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEE
Q 002097 228 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 307 (967)
Q Consensus 228 ~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L 307 (967)
+++++++|.++. +|. .+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..|. .|.++++|++|
T Consensus 3 ~~l~ls~n~l~~----ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIH----VPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSS----CCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEE
T ss_pred ceEecCCCCccc----ccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEE
Confidence 467888888764 443 333 6788888888888877777788888888888888888743343 67788888888
Q ss_pred EcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccC
Q 002097 308 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH 387 (967)
Q Consensus 308 ~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~ 387 (967)
++++|+++. ++.. .+ ++|++|++++
T Consensus 75 ~Ls~N~l~~-lp~~---~l---------------------------------------------------~~L~~L~L~~ 99 (520)
T 2z7x_B 75 DLSHNKLVK-ISCH---PT---------------------------------------------------VNLKHLDLSF 99 (520)
T ss_dssp ECCSSCCCE-EECC---CC---------------------------------------------------CCCSEEECCS
T ss_pred ecCCCceee-cCcc---cc---------------------------------------------------CCccEEeccC
Confidence 888777652 2211 22 3344444444
Q ss_pred CcCcc-cCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCc--cEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCC
Q 002097 388 IKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL--RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 464 (967)
Q Consensus 388 ~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 464 (967)
|.+.+ .+|..+ +++++|++|++++|.+.+ ..+..+++| ++|++++|.+.+
T Consensus 100 N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~----------------------- 152 (520)
T 2z7x_B 100 NAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG----------------------- 152 (520)
T ss_dssp SCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-----------------------
T ss_pred Cccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-----------------------
Confidence 44443 234433 566666666666666654 223334444 555555555500
Q ss_pred CCCCcccccCCC-CCCEEEccCCcCCCccchhHhhcCCCCcEEEccccc-------ccccccccccCCccccceeccCcc
Q 002097 465 DGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS-------LKGHIFSRIFSLRNLRWLLLEGNH 536 (967)
Q Consensus 465 ~~~~~~~~~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~ 536 (967)
.+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 333333333322 112334444444444444433444444444444443 333332 34445555555555554
Q ss_pred ccccCCccCc---CCCCCcEEECcCCcCCCCCCccc-----cCCCCCCEEECCCCccccCCC-ccccCC---CCCCEEeC
Q 002097 537 FVGEIPQSLS---KCSSLKGLYLNNNNLSGKIPRWL-----GNLKGLQHIVMPKNHLEGPIP-VEFCRL---DSLQILDI 604 (967)
Q Consensus 537 l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~L 604 (967)
+.+..+..+. ..++|++|++++|++++.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 4432111100 12355555555555555555544 4555555555555554 222 222222 34555555
Q ss_pred cCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcc-
Q 002097 605 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG- 683 (967)
Q Consensus 605 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 683 (967)
++|.+.+. . .+..+++|++|++++|++++..|.+++.+++|++|++++|++++
T Consensus 310 ~~n~l~~~-----------------------~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 310 SGTRMVHM-----------------------L---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp ESSCCCCC-----------------------C---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred CCCccccc-----------------------c---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 55544311 0 12466778888888888887777778888888888888888875
Q ss_pred -cCChhccCCCCCCEEECCCCcCcccCCC-cccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccc
Q 002097 684 -EVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 761 (967)
Q Consensus 684 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (967)
.+|..+..+++|++|++++|++++.+|. .+..
T Consensus 364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~---------------------------------------------- 397 (520)
T 2z7x_B 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---------------------------------------------- 397 (520)
T ss_dssp HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC----------------------------------------------
T ss_pred ccchHHHhhCCCCCEEECCCCcCCcccccchhcc----------------------------------------------
Confidence 4556788888888888888888774443 3433
Q ss_pred cccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCcc-ccC
Q 002097 762 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVD 840 (967)
Q Consensus 762 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~ 840 (967)
++.|++|++++|.+++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. +..
T Consensus 398 -------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~ 466 (520)
T 2z7x_B 398 -------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR 466 (520)
T ss_dssp -------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred -------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhcc
Confidence 23788888888888877776664 78999999999998 67777778999999999999998 45654 888
Q ss_pred CCcCCeEecCCCcCccCCCC
Q 002097 841 LNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 841 l~~L~~l~ls~N~l~~~~p~ 860 (967)
+++|+++++++|+++|.++.
T Consensus 467 l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CTTCCEEECCSSCBCCCHHH
T ss_pred CCcccEEECcCCCCcccCCc
Confidence 99999999999999988774
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-43 Score=422.54 Aligned_cols=380 Identities=20% Similarity=0.241 Sum_probs=302.8
Q ss_pred CcCCcCCChhhhhcCCCCcEEECcCCCCCC-----------------CCccccc--CCCCCCEEEccCCcCCCccchhHh
Q 002097 437 NNFQGHIPVEIGDILPSLVYFNISMNALDG-----------------SIPSSFG--NVIFLQFLDLSNNKLTGEIPDHLA 497 (967)
Q Consensus 437 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~i~~~~~ 497 (967)
|.+++ +|..+.. +++|++|++++|.+++ .+|..++ ++++|++|+|++|++.+.+|..+.
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 66776 7876655 7889999999999887 2788777 899999999999988888886654
Q ss_pred hcCCCCcEEEccccc-ccc-cccccccCCc-------cccceeccCccccccCCc--cCcCCCCCcEEECcCCcCCCCCC
Q 002097 498 MCCVNLEFLSLSNNS-LKG-HIFSRIFSLR-------NLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKIP 566 (967)
Q Consensus 498 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~ 566 (967)
.+++|++|++++|+ +++ .+|..+..++ +|++|++++|.++ .+|. .+.++++|++|++++|+++ .+|
T Consensus 513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 48899999999998 887 7777666655 8999999999998 7787 8889999999999999988 777
Q ss_pred ccccCCCCCCEEECCCCccccCCCccccCCCC-CCEEeCcCCcCCcCCCCCcCC---CcccEEEccCCcCcccCCcc--c
Q 002097 567 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDISDNNISGSLPSCFYP---LSIKQVHLSKNMLHGQLKEG--T 640 (967)
Q Consensus 567 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~--~ 640 (967)
.++.+++|+.|++++|++. .+|..+.++++ |+.|++++|.+. .+|..+.. ++|+.|++++|.+.+.+|.- .
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 7888999999999999988 77888888888 999999999988 67766552 34899999999988766531 1
Q ss_pred cc--CCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCC--------CCCCEEECCCCcCcccCC
Q 002097 641 FF--NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL--------NQLQLLDLSDNNLHGLIP 710 (967)
Q Consensus 641 ~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~Ls~n~l~~~~~ 710 (967)
+. .+++|+.|+|++|+++...+..+..+++|+.|+|++|++. .+|..+... ++|+.|+|++|+++ .+|
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 22 4468999999999999444445568999999999999998 566554432 38999999999998 455
Q ss_pred Cccc--ccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcc
Q 002097 711 SCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 788 (967)
Q Consensus 711 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 788 (967)
..+. . +++|+.|+|++|.+++ +|.
T Consensus 745 ~~l~~~~-----------------------------------------------------l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 745 DDFRATT-----------------------------------------------------LPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp GGGSTTT-----------------------------------------------------CTTCCEEECCSSCCSS-CCC
T ss_pred HHhhhcc-----------------------------------------------------CCCcCEEEeCCCCCCc-cch
Confidence 5443 3 3489999999999997 788
Q ss_pred cccCCCCCCEEECcC------ccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCc
Q 002097 789 QIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT 862 (967)
Q Consensus 789 ~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 862 (967)
.+..+++|+.|+|++ |++.+.+|..|+.+++|+.|+|++|++ +.+|..+. ++|+.|++++|++...-+..+
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 899999999999976 888999999999999999999999999 78898765 689999999999886555544
Q ss_pred ccccccCcccccCCcCCC--CCC
Q 002097 863 AQFATFNKSSYDGNPFLC--GLP 883 (967)
Q Consensus 863 ~~~~~~~~~~~~~n~~lc--~~~ 883 (967)
..........+.+|+..+ |||
T Consensus 848 ~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 848 CPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp HHHHHTTCCEEECCTTSEEESCG
T ss_pred cccccchheeecCCCccccCCCC
Confidence 333333444555555544 554
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.8e-43 Score=412.12 Aligned_cols=467 Identities=22% Similarity=0.218 Sum_probs=328.0
Q ss_pred CcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCC
Q 002097 225 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 304 (967)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L 304 (967)
++|++|++++|.+++ +++.++..+++|++|++++|.+.+..|..|.++++|++|++++|+++ .+++..|+++++|
T Consensus 26 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCC
Confidence 588999999998874 44457889999999999999999888888999999999999999998 5565468999999
Q ss_pred cEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEE
Q 002097 305 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 384 (967)
Q Consensus 305 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~ 384 (967)
++|++++|++.+......+.++++|++|++++|.
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~---------------------------------------------- 134 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE---------------------------------------------- 134 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS----------------------------------------------
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCc----------------------------------------------
Confidence 9999999988753222345556666666655553
Q ss_pred ccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCC
Q 002097 385 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 464 (967)
Q Consensus 385 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 464 (967)
..+.+|...++++++|++|++++|.+.+..+..+..+++|++|+++.|.+. .+|......+++|++|++++|.+
T Consensus 135 -----~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 135 -----TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp -----SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred -----cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence 222233222345666667777777776666667777888888888888875 56666666678899999999888
Q ss_pred CCCC--c-ccccCCCCCCEEEccCCcCCCccchhHh---hcCCCCcEEEcccccccccc------cccccCCccccceec
Q 002097 465 DGSI--P-SSFGNVIFLQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLSNNSLKGHI------FSRIFSLRNLRWLLL 532 (967)
Q Consensus 465 ~~~~--~-~~~~~l~~L~~L~L~~n~l~~~i~~~~~---~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L 532 (967)
++.. + .....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+.. ...+..+++|+.|++
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 8642 1 2234567888888888887754444332 34667788888877765431 122344555566666
Q ss_pred cCccccccC-----CccCcCCCCCcEEECcCCcCCCCCCccc-cCCCCCCEEECCCCccccCCC---ccccCCCCCCEEe
Q 002097 533 EGNHFVGEI-----PQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIP---VEFCRLDSLQILD 603 (967)
Q Consensus 533 ~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ 603 (967)
.++.+.... +..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++.+..| ..++.+++|+.|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 555443210 111112334555555555554 344333 345555555555555544332 1244455555555
Q ss_pred CcCCcCCcCCCCCcCCCcccEEEccCCcCcccCC-cccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCc
Q 002097 604 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK-EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 682 (967)
Q Consensus 604 L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 682 (967)
+++|+++ +..+ ...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 368 Ls~N~l~-----------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 368 LSQNHLR-----------------------SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CTTSCCC-----------------------CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccCCccc-----------------------ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 5555443 2211 124778899999999999998 67888889999999999999998
Q ss_pred ccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeecccccc
Q 002097 683 GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 762 (967)
Q Consensus 683 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (967)
+ +|..+ .++|++|++++|++++.++ .
T Consensus 424 ~-l~~~~--~~~L~~L~Ls~N~l~~~~~----~----------------------------------------------- 449 (549)
T 2z81_A 424 V-VKTCI--PQTLEVLDVSNNNLDSFSL----F----------------------------------------------- 449 (549)
T ss_dssp C-CCTTS--CTTCSEEECCSSCCSCCCC----C-----------------------------------------------
T ss_pred c-ccchh--cCCceEEECCCCChhhhcc----c-----------------------------------------------
Confidence 3 44433 3689999999999886531 1
Q ss_pred ccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCC
Q 002097 763 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 835 (967)
Q Consensus 763 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 835 (967)
++.|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..|+.+++|+.|++++|++++..|
T Consensus 450 ------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 450 ------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ------CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ------CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 348999999999998 6776 5789999999999999999999999999999999999999998887
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-42 Score=418.17 Aligned_cols=437 Identities=18% Similarity=0.218 Sum_probs=366.0
Q ss_pred cceeEEEccCCCCCCCCcChhccCCCCccEEEc-cCCcCcccCchHHh--------------------------------
Q 002097 353 FQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL-SHIKMIGEFPNWLL-------------------------------- 399 (967)
Q Consensus 353 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~-------------------------------- 399 (967)
.+++.|+| .++.+.|.+|..++.++.|+.|++ ++|.+.|..|....
T Consensus 323 ~~V~~L~L-s~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSL-AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEEC-TTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEC-ccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 36888888 566777888888899999999999 77766555221100
Q ss_pred ------------------hcCCCCcEEEcc--CCcccCcCCCCcCCCCCccEEEecCCcCCc-----------------C
Q 002097 400 ------------------ENNTKLEFLYLV--NDSLAGPFRLPIHSHKRLRFLDVSNNNFQG-----------------H 442 (967)
Q Consensus 400 ------------------~~~~~L~~L~L~--~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------~ 442 (967)
.....++.+.+. .|.+++ +|..+..+++|++|++++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 011122223333 367777 67789999999999999999997 3
Q ss_pred CChhhh-hcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCc-CCC-ccchhHhh------cCCCCcEEEcccccc
Q 002097 443 IPVEIG-DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK-LTG-EIPDHLAM------CCVNLEFLSLSNNSL 513 (967)
Q Consensus 443 ~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~i~~~~~~------~l~~L~~L~L~~n~l 513 (967)
+|..+. ..+++|++|++++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+.. .+++|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888773 358999999999999999999999999999999999998 987 78876643 245999999999999
Q ss_pred cccccc--cccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCC-CCEEECCCCccccCCC
Q 002097 514 KGHIFS--RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG-LQHIVMPKNHLEGPIP 590 (967)
Q Consensus 514 ~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~ 590 (967)
. .+|. .+..+++|++|++++|.++ .+| .|..+++|++|++++|++. .+|..+..+++ |+.|++++|.+. .+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 9 7888 8999999999999999999 788 8999999999999999999 88989999999 999999999998 678
Q ss_pred ccccCCCC--CCEEeCcCCcCCcCCCCCc------CCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcc
Q 002097 591 VEFCRLDS--LQILDISDNNISGSLPSCF------YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 662 (967)
Q Consensus 591 ~~~~~l~~--L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 662 (967)
..+..++. |+.|++++|.+.+.+|... ...+|+.|++++|.+. .+|...+..+++|+.|+|++|+++ .+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 88877654 9999999999998777543 3568999999999998 677766779999999999999999 555
Q ss_pred hhh-hC-------CCCCCEEEcCCCcCcccCChhcc--CCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCc
Q 002097 663 DWI-DG-------LSQLSHLNLAHNNLEGEVPIQLC--RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF 732 (967)
Q Consensus 663 ~~~-~~-------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (967)
..+ .. +++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L---------------- 775 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS---------------- 775 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC----------------
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC----------------
Confidence 443 32 239999999999999 7888887 99999999999999998 56666553
Q ss_pred ccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCC------CcccCCCcccccCCCCCCEEECcCccc
Q 002097 733 KTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC------NKLVGHIPPQIGNLTRIQTLNLSHNNL 806 (967)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~p~~~~~l~~L~~L~Ls~N~l 806 (967)
++|+.|+|++ |.+.+.+|..|..+++|+.|+|++|.+
T Consensus 776 -------------------------------------~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 776 -------------------------------------SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp -------------------------------------TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred -------------------------------------CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 3899999976 889999999999999999999999999
Q ss_pred cccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCcc
Q 002097 807 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 856 (967)
Q Consensus 807 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 856 (967)
+.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|++..
T Consensus 819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 819 -RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp -CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred -CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 68888776 699999999999998888887777778888888887664
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.1e-41 Score=404.70 Aligned_cols=512 Identities=21% Similarity=0.219 Sum_probs=334.8
Q ss_pred cccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCc
Q 002097 226 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 305 (967)
Q Consensus 226 ~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 305 (967)
.+++|||++|.|+ .+++.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|+++ .+|...|.++++|+
T Consensus 53 ~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCC
Confidence 4555555555554 233344555555555555555555444445555555555555555554 34443455555555
Q ss_pred EEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEc
Q 002097 306 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 385 (967)
Q Consensus 306 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l 385 (967)
+|++++|++++ ++...+ +.+++|++|++
T Consensus 128 ~L~Ls~N~l~~-l~~~~~---------------------------------------------------~~L~~L~~L~L 155 (635)
T 4g8a_A 128 KLVAVETNLAS-LENFPI---------------------------------------------------GHLKTLKELNV 155 (635)
T ss_dssp EEECTTSCCCC-STTCCC---------------------------------------------------TTCTTCCEEEC
T ss_pred EEECCCCcCCC-CChhhh---------------------------------------------------hcCcccCeecc
Confidence 55555554442 222223 33444555555
Q ss_pred cCCcCcc-cCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCC----ccEEEecCCcCCcCCChhhhhcCCCCcEEECc
Q 002097 386 SHIKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR----LRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 460 (967)
Q Consensus 386 ~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~----L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 460 (967)
++|.+.+ ..|.. ++.+++|++|++++|.+.+..+..+..+.+ ...++++.|.+. .++...+. ...++.+++.
T Consensus 156 s~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~ 232 (635)
T 4g8a_A 156 AHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLR 232 (635)
T ss_dssp CSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEE
T ss_pred ccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhh
Confidence 5555443 23333 467889999999999988776666544333 346788888877 34444444 2356777777
Q ss_pred CCCCCC-CCcccccCCCCCCEEEccCCcCCC-----ccchhHhhcCCCCcEEEcccccccc---cccccccCCcccccee
Q 002097 461 MNALDG-SIPSSFGNVIFLQFLDLSNNKLTG-----EIPDHLAMCCVNLEFLSLSNNSLKG---HIFSRIFSLRNLRWLL 531 (967)
Q Consensus 461 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-----~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~ 531 (967)
+|.... ..+..+..+..++...+..+.... ......+.....+....+..+.... ..+..+..+.+++.+.
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence 776553 234456677777766654332211 1222223335556666665544332 2234455677788888
Q ss_pred ccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCc
Q 002097 532 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 611 (967)
Q Consensus 532 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 611 (967)
+.++.+.... .+.....++.|++.+|.+.+..+. .++.|+.+++..|..... .....+++|+.+++++|.+..
T Consensus 313 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 313 LVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp EESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhcccccc
Confidence 8888776443 355667888899888888754333 456788888888876533 334568888999999888753
Q ss_pred C--CCCC-cCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcc-hhhhCCCCCCEEEcCCCcCcccCCh
Q 002097 612 S--LPSC-FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPI 687 (967)
Q Consensus 612 ~--~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 687 (967)
. .+.. ....+|+.+++..+..... +. .+..+++|+.++++.++.....+ ..+..+++++.++++.|.+.+..+.
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITM-SS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEE-CS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ccccccchhhhhhhhhhhccccccccc-cc-cccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 3 2222 2366788888888776543 33 57778888888888877665544 5577788888888888888888888
Q ss_pred hccCCCCCCEEECCCCcCc-ccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccch
Q 002097 688 QLCRLNQLQLLDLSDNNLH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 766 (967)
Q Consensus 688 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (967)
.+..+++|++|++++|++. +.+|..|..+
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-------------------------------------------------- 493 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTEL-------------------------------------------------- 493 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTC--------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhc--------------------------------------------------
Confidence 8888888888888888743 4456666553
Q ss_pred hhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCC-CcCC
Q 002097 767 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLA 845 (967)
Q Consensus 767 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~ 845 (967)
++|++|||++|++++..|..|+++++|++|+|++|+|++.+|..|+.+++|++|||++|++++..|..+..+ ++|+
T Consensus 494 ---~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 494 ---RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp ---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred ---cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 378888888888888888888888888888888888888888888888888888888888888888888887 6788
Q ss_pred eEecCCCcCccCCC
Q 002097 846 IFIVAYNNLSGKIP 859 (967)
Q Consensus 846 ~l~ls~N~l~~~~p 859 (967)
+|++++|+++|.+.
T Consensus 571 ~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 571 FLNLTQNDFACTCE 584 (635)
T ss_dssp EEECTTCCBCCSGG
T ss_pred EEEeeCCCCcccCC
Confidence 88888888888775
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.9e-41 Score=401.74 Aligned_cols=519 Identities=21% Similarity=0.172 Sum_probs=398.9
Q ss_pred cccceecccccccccccchhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCC
Q 002097 198 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 277 (967)
Q Consensus 198 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 277 (967)
+++++|+| ++|.+++..+..+.. +++|++|+|++|.++ .+++++|..+++|++|+|++|++++..+.+|.+++
T Consensus 52 ~~~~~LdL--s~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDL--SFNPLRHLGSYSFFS-FPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEEC--TTSCCCEECTTTTTT-CTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEe--eCCCCCCCCHHHHhC-CCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 47999999 778888777777777 999999999999997 47777899999999999999999988888999999
Q ss_pred CCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeE
Q 002097 278 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 357 (967)
Q Consensus 278 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 357 (967)
+|++|++++|+++ .+|...|+++++|++|++++|.+.+......+..+++|++|++++|.++......
T Consensus 125 ~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------- 192 (635)
T 4g8a_A 125 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD----------- 192 (635)
T ss_dssp TCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-----------
T ss_pred CCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-----------
Confidence 9999999999998 6777689999999999999999875444455677778888888777766432211
Q ss_pred EEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcC-CCCcEEEccCCcccCcCCCCcCCCCCccEEEecC
Q 002097 358 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN-TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN 436 (967)
Q Consensus 358 L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 436 (967)
+..+ ..+ .....++++.|.+....+..+ ....++.+++.+
T Consensus 193 ----------------l~~L----------------------~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~ 233 (635)
T 4g8a_A 193 ----------------LRVL----------------------HQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRN 233 (635)
T ss_dssp ----------------GHHH----------------------HTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEES
T ss_pred ----------------ccch----------------------hhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhc
Confidence 1000 011 112344555555544333332 234556677777
Q ss_pred CcCCcCCChhhhhcCCCCcEEECcCCC------CCCCCcccccCCCCCCEEEccCCcCCCccc--hhHhhcCCCCcEEEc
Q 002097 437 NNFQGHIPVEIGDILPSLVYFNISMNA------LDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVNLEFLSL 508 (967)
Q Consensus 437 n~l~~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~--~~~~~~l~~L~~L~L 508 (967)
|.....++...+..++.++...+..+. +.......+..+..+...++..+....... ...+....+++.+++
T Consensus 234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 313 (635)
T 4g8a_A 234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL 313 (635)
T ss_dssp CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence 765544444445556666666554322 222334455566666666665554331111 122334678888888
Q ss_pred ccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCcccc-
Q 002097 509 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG- 587 (967)
Q Consensus 509 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 587 (967)
.++.+.... .+.....|+.|++.+|.+.+..+ ..+..|+.+++..|.+... .....+++|+.+++++|.+..
T Consensus 314 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 314 VSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp ESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccc
Confidence 888776533 34566788999999988875443 3456788899988887643 234568899999999997753
Q ss_pred -CCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhh
Q 002097 588 -PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 666 (967)
Q Consensus 588 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 666 (967)
..+..+..+.+|+.++++.|......+.....++|+.+++..+......+...|..+++++.++++.|.+.+..+..+.
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 4566677888999999999988766666666889999999998888777777899999999999999999999999999
Q ss_pred CCCCCCEEEcCCCcCc-ccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCch
Q 002097 667 GLSQLSHLNLAHNNLE-GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 745 (967)
Q Consensus 667 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (967)
.+++|++|++++|++. +..|..|..+++|++|+|++|++++.+|..|.+++
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~---------------------------- 518 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS---------------------------- 518 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------------------------
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC----------------------------
Confidence 9999999999999854 45788999999999999999999999999888754
Q ss_pred hhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCC-CCCCEEE
Q 002097 746 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL-RHIESLD 824 (967)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ 824 (967)
+|++|+|++|++++..|..|..+++|++|+|++|++++.+|+.|..+ ++|+.|+
T Consensus 519 -------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 519 -------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp -------------------------TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred -------------------------CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 89999999999999889999999999999999999999999999998 7899999
Q ss_pred CcCCcCcccC
Q 002097 825 LSYNKLSGKI 834 (967)
Q Consensus 825 Ls~N~l~~~~ 834 (967)
|++|++++.-
T Consensus 574 L~~Np~~C~C 583 (635)
T 4g8a_A 574 LTQNDFACTC 583 (635)
T ss_dssp CTTCCBCCSG
T ss_pred eeCCCCcccC
Confidence 9999998754
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-42 Score=404.31 Aligned_cols=439 Identities=20% Similarity=0.207 Sum_probs=357.3
Q ss_pred CCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEE
Q 002097 378 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 457 (967)
Q Consensus 378 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 457 (967)
++++.|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 56777777777776655544 478889999999999988887888889999999999999988 57765 47899999
Q ss_pred ECcCCCCCC-CCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCC--cEEEcccccc--cccccccccCCc-ccccee
Q 002097 458 NISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNL--EFLSLSNNSL--KGHIFSRIFSLR-NLRWLL 531 (967)
Q Consensus 458 ~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~ 531 (967)
++++|.+++ .+|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..+..+. +...++
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999999987 468899999999999999999874 223457788 9999999999 777787777665 344678
Q ss_pred ccCccccccCCc-cCcCCCCCcEEECcCCc-------CCCCCCccccCCCCCCEEECCCCccccCCCcccc---CCCCCC
Q 002097 532 LEGNHFVGEIPQ-SLSKCSSLKGLYLNNNN-------LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC---RLDSLQ 600 (967)
Q Consensus 532 L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~ 600 (967)
+++|.+.+.++. .+.++++|+.|++++|. +.+.+| .++.+++|+.|++++|.+.+..+..+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 888888776554 67788999999999987 555555 678899999999999887654322221 246899
Q ss_pred EEeCcCCcCCcCCCCCc-----C-CCcccEEEccCCcCcccCCcccccCC---CCCcEEECcCccCCCCcchhhhCCCCC
Q 002097 601 ILDISDNNISGSLPSCF-----Y-PLSIKQVHLSKNMLHGQLKEGTFFNC---SSLVTLDLSYNYLNGSIPDWIDGLSQL 671 (967)
Q Consensus 601 ~L~L~~n~l~~~~~~~~-----~-~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L 671 (967)
.|++++|++.|.+|..+ . +++|+.+++++|.+ .+|...+..+ .+|+.|++++|.+.... .+..+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence 99999999998888765 3 78899999999988 5663344443 67999999999987432 23688999
Q ss_pred CEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcc--cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhh
Q 002097 672 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG--LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 749 (967)
Q Consensus 672 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (967)
++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~---------------------------------- 372 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ---------------------------------- 372 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----------------------------------
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh----------------------------------
Confidence 999999999999899999999999999999999986 33444544
Q ss_pred heeeeeeccccccccchhhhcccceEECCCCcccCCCccc-ccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCC
Q 002097 750 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 828 (967)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 828 (967)
+++|++|++++|.+++.+|.. +..+++|+.|++++|.+++.+|..+. ++|+.||+++|
T Consensus 373 -------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 373 -------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp -------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred -------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence 348999999999999856664 88999999999999999998888775 79999999999
Q ss_pred cCcccCCccccCCCcCCeEecCCCcCccCCCCC-cccccccCcccccCCcCCCCCCCCCC
Q 002097 829 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW-TAQFATFNKSSYDGNPFLCGLPLPIC 887 (967)
Q Consensus 829 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~~n~~lc~~~l~~c 887 (967)
+++ .+|..+..+++|++|++++|+++. +|.. +..+..+....+.+||+.|.|+..|.
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 999 889888899999999999999995 6653 66778888889999999998876443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.5e-41 Score=393.48 Aligned_cols=462 Identities=19% Similarity=0.180 Sum_probs=280.3
Q ss_pred cCcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCC
Q 002097 224 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 303 (967)
Q Consensus 224 l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 303 (967)
+...++++++++.++. +|. .+. ++|++|++++|.+.+..|..|.++++|++|++++|+++ .+++..|.++++
T Consensus 30 ~~~~~~l~ls~~~L~~----ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNLTH----VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSCCCS----CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTT
T ss_pred cCCCcEEEcCCCCCcc----CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCC
Confidence 4445788888888774 443 222 67888888888888777777888888888888888887 443336778888
Q ss_pred CcEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEE
Q 002097 304 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 383 (967)
Q Consensus 304 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L 383 (967)
|++|++++|+++ .++.. .+++|++|++
T Consensus 102 L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L------------------------------------------------- 128 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISCC---PMASLRHLDL------------------------------------------------- 128 (562)
T ss_dssp CCEEECTTSCCC-EECSC---CCTTCSEEEC-------------------------------------------------
T ss_pred CCEEECCCCcCC-ccCcc---ccccCCEEEC-------------------------------------------------
Confidence 888888887766 22221 3333333333
Q ss_pred EccCCcCcc-cCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCc--cEEEecCCcC--CcCCChhhhhcCC-CCcEE
Q 002097 384 ELSHIKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL--RFLDVSNNNF--QGHIPVEIGDILP-SLVYF 457 (967)
Q Consensus 384 ~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~~~-~L~~L 457 (967)
++|.+.+ .+|.. ++++++|++|++++|.+.+.. +..+++| ++|++++|.+ ++..|..+.. +. ..-.+
T Consensus 129 --s~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l 201 (562)
T 3a79_B 129 --SFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHL 201 (562)
T ss_dssp --CSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEE
T ss_pred --CCCCccccCchHh-hcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccc-cCcceEEE
Confidence 3333332 22333 356777777777777766432 2233333 6666666665 4444433221 11 11133
Q ss_pred ECcCCCCCCCCcc-cccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCcc
Q 002097 458 NISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 536 (967)
Q Consensus 458 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 536 (967)
++++|.+.+.++. .+..+++|+.+++++|+..-. .+. .....+..+++|+.|++.++.
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~l~-~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ--------------------RLM-TFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH--------------------HHH-HHHHHHHSCSSCEEEEEEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccc--------------------hHH-HHHHHHhccCcceEEEecCCc
Confidence 4444444443322 333444555555555431000 011 111223334444444444443
Q ss_pred cccc----CCccCcCCCCCcEEECcCCcCCCCCCccc-----cCCCCCCEEECCCCccccCCC-ccccC---CCCCCEEe
Q 002097 537 FVGE----IPQSLSKCSSLKGLYLNNNNLSGKIPRWL-----GNLKGLQHIVMPKNHLEGPIP-VEFCR---LDSLQILD 603 (967)
Q Consensus 537 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~ 603 (967)
+.+. .+..+ ..++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..+|+.|+
T Consensus 261 l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 261 TTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp ECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred CcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 3221 01111 12355556666665555555544 3344444444444443 122 11111 13455555
Q ss_pred CcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcc
Q 002097 604 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 683 (967)
Q Consensus 604 L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 683 (967)
+++|.+... . ....+++|++|++++|++++..|.+++++++|++|++++|++++
T Consensus 338 l~~n~~~~~-----------------------~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 338 ISDTPFIHM-----------------------V---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp EESSCCCCC-----------------------C---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ccCCCcccc-----------------------c---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 555554311 0 12567788888888888888788888888888999998888886
Q ss_pred c--CChhccCCCCCCEEECCCCcCcccCCC-cccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeecccc
Q 002097 684 E--VPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 760 (967)
Q Consensus 684 ~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (967)
. +|..+..+++|++|++++|++++.+|. .+..
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--------------------------------------------- 426 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--------------------------------------------- 426 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC---------------------------------------------
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcC---------------------------------------------
Confidence 3 356688889999999999988874443 3443
Q ss_pred ccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCcc-cc
Q 002097 761 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LV 839 (967)
Q Consensus 761 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~ 839 (967)
+++|++|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +.
T Consensus 427 --------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 427 --------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp --------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred --------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 23789999999999877776654 78999999999998 56666669999999999999999 56655 88
Q ss_pred CCCcCCeEecCCCcCccCCCC
Q 002097 840 DLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 840 ~l~~L~~l~ls~N~l~~~~p~ 860 (967)
.+++|+++++++|+++|.+|.
T Consensus 495 ~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TCTTCCCEECCSCCBCCCHHH
T ss_pred cCCCCCEEEecCCCcCCCcch
Confidence 999999999999999998874
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-39 Score=373.83 Aligned_cols=371 Identities=21% Similarity=0.242 Sum_probs=303.0
Q ss_pred EEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEccc
Q 002097 431 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 510 (967)
Q Consensus 431 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 510 (967)
.++.+++.++ .+|. + .+++++|++++|.+++..|..|+++++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4566666665 5665 2 367888888888888777888888888888888888887677776677788888888888
Q ss_pred ccccccccccccCCccccceeccCccccccCCcc--CcCCCCCcEEECcCCcCCCCCCcc-ccCCCCCCEEECCCCcccc
Q 002097 511 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS--LSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEG 587 (967)
Q Consensus 511 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ 587 (967)
|.+.+..|..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+++..|.. +.++++|++|++++|++.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8888777888888888888888888887644443 788888888888888888776765 7888888888888888888
Q ss_pred CCCccccCC--CCCCEEeCcCCcCCcCCCCC---------cCCCcccEEEccCCcCcccCCcccccC---CCCCcEEECc
Q 002097 588 PIPVEFCRL--DSLQILDISDNNISGSLPSC---------FYPLSIKQVHLSKNMLHGQLKEGTFFN---CSSLVTLDLS 653 (967)
Q Consensus 588 ~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~ 653 (967)
..+..+..+ .+|+.|++++|.+.+..+.. +..++|++|++++|.+.+..+. .+.. .++|+.|+++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEECT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEeec
Confidence 777777665 67888888888887654432 2346788888888888776665 3322 3788888888
Q ss_pred CccCCCC----------cchhhhC--CCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccc
Q 002097 654 YNYLNGS----------IPDWIDG--LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES 721 (967)
Q Consensus 654 ~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 721 (967)
+|.+.+. .+..+.+ .++|++|++++|++.+..|..+..+++|++|++++|++++..|..|..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---- 323 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---- 323 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc----
Confidence 8865432 2222333 36899999999999999999999999999999999999998888877644
Q ss_pred cCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEEC
Q 002097 722 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 801 (967)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 801 (967)
+|++|+|++|.+++..|..|..+++|++|+|
T Consensus 324 -------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 324 -------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp -------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred -------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 8999999999999888999999999999999
Q ss_pred cCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 802 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 802 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
++|++++..|..|+.+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999999999999999999999987777889999999999999999999996
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=373.71 Aligned_cols=436 Identities=23% Similarity=0.250 Sum_probs=295.6
Q ss_pred CCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEE
Q 002097 378 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 457 (967)
Q Consensus 378 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 457 (967)
...+.++++++.+.+ +|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..|.. +..+++|++|
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTCCEE
T ss_pred CCCcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCCCEE
Confidence 344778888887764 66543 267888888888888777777788888888888888887544433 3447788888
Q ss_pred ECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccch-hHhhcCCCCcEEEcccccccccccccccCCccc--cceeccC
Q 002097 458 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD-HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL--RWLLLEG 534 (967)
Q Consensus 458 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~ 534 (967)
++++|.++ .+|.. .+++|++|++++|+++ .++. ..+..+++|++|++++|.+.+.. +..+++| ++|++++
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEE
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeec
Confidence 88888887 44544 6788888888888887 4431 33445788888888888877533 3344444 8888888
Q ss_pred ccc--cccCCccCcCCC-CCcEEECcCCcCCCCCCc-cccCCCCCCEEECCCCc-----cccCCCccccCCCCCCEEeCc
Q 002097 535 NHF--VGEIPQSLSKCS-SLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNH-----LEGPIPVEFCRLDSLQILDIS 605 (967)
Q Consensus 535 n~l--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~L~ 605 (967)
|.+ ++..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|+ +.+ ....+..+++|+.++++
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEec
Confidence 877 666666665543 111446666666554443 34456667777776663 111 11223333443333333
Q ss_pred CCcCCcC----CCCCcCCCcccEEEccCCcCcccCCcccc----cCC--------------------------CCCcEEE
Q 002097 606 DNNISGS----LPSCFYPLSIKQVHLSKNMLHGQLKEGTF----FNC--------------------------SSLVTLD 651 (967)
Q Consensus 606 ~n~l~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~--------------------------~~L~~L~ 651 (967)
++.+.+. ++......+|++|++++|.+.+.+|...| ..+ .+|+.|+
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence 3333211 01111122444444444444444443211 122 4577777
Q ss_pred CcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccC--CCcccccccccccCCCCCCC
Q 002097 652 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI--PSCFDNTTLHESYNNNSSPD 729 (967)
Q Consensus 652 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~~~~~~~~~ 729 (967)
+++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++.. |..+..
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------- 401 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-------------- 401 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT--------------
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC--------------
Confidence 7777665321 1256788888888888888778888888888888888888887643 333443
Q ss_pred CCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcc-cccCCCCCCEEECcCccccc
Q 002097 730 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP-QIGNLTRIQTLNLSHNNLTG 808 (967)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~ 808 (967)
+++|++|++++|.+++.+|. .+..+++|+.|++++|++++
T Consensus 402 ---------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 402 ---------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp ---------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred ---------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 44899999999999985665 48999999999999999998
Q ss_pred cCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCC-cccccccCcccccCCcCCCCCCCC
Q 002097 809 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW-TAQFATFNKSSYDGNPFLCGLPLP 885 (967)
Q Consensus 809 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~~n~~lc~~~l~ 885 (967)
.+|..+. ++|+.|||++|+++ .+|..+..+++|++|++++|++++ +|.. +..+..+....+.+||+.|+|+..
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 8887765 79999999999999 788888899999999999999995 6654 677888888899999999988754
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-37 Score=357.64 Aligned_cols=373 Identities=23% Similarity=0.277 Sum_probs=321.7
Q ss_pred CcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccc-cccccCCccccceec
Q 002097 454 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI-FSRIFSLRNLRWLLL 532 (967)
Q Consensus 454 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 532 (967)
-+.++.+++.++ .+|. + .++|++|++++|.++ .++...+..+++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 446788888887 4555 3 378999999999998 554444566999999999999997554 677999999999999
Q ss_pred cCccccccCCccCcCCCCCcEEECcCCcCCCCCCcc--ccCCCCCCEEECCCCccccCCCcc-ccCCCCCCEEeCcCCcC
Q 002097 533 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--LGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNI 609 (967)
Q Consensus 533 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l 609 (967)
++|.+++..|..|.++++|++|++++|.+++..|.. +..+++|++|++++|++.+..|.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998755554 899999999999999999887876 88999999999999999
Q ss_pred CcCCCCCcC---CCcccEEEccCCcCcccCCc-------ccccCCCCCcEEECcCccCCCCcchhhhCC---CCCCEEEc
Q 002097 610 SGSLPSCFY---PLSIKQVHLSKNMLHGQLKE-------GTFFNCSSLVTLDLSYNYLNGSIPDWIDGL---SQLSHLNL 676 (967)
Q Consensus 610 ~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~-------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L 676 (967)
.+..+..+. ..+++.+++++|.+.+..+. ..+..+++|++|++++|++++..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 988887665 37899999999998754432 123466899999999999999888877654 89999999
Q ss_pred CCCcCcccC----------ChhccC--CCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCc
Q 002097 677 AHNNLEGEV----------PIQLCR--LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS 744 (967)
Q Consensus 677 ~~n~l~~~~----------~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (967)
++|.+.+.. +..+.. .++|++|++++|.+++.+|..+..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------- 299 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT--------------------------- 299 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT---------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC---------------------------
Confidence 999665432 222222 36899999999999999888887644
Q ss_pred hhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEE
Q 002097 745 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 824 (967)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 824 (967)
+|++|++++|.+++..|..|..+++|+.|+|++|.+++..|..|+.+++|++||
T Consensus 300 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 300 --------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp --------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred --------------------------CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 899999999999998899999999999999999999999999999999999999
Q ss_pred CcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCcccccccCcccccCCcCCCCCCC
Q 002097 825 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 884 (967)
Q Consensus 825 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l 884 (967)
|++|++++..|..+..+++|++|++++|++++..+..+..+..+....+.+||+.|.||.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999999987776667888899999999999999884
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-38 Score=358.89 Aligned_cols=262 Identities=26% Similarity=0.317 Sum_probs=150.2
Q ss_pred CCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccE
Q 002097 252 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 331 (967)
Q Consensus 252 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 331 (967)
..+|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|. .++++++|+.+++..|.. .+++.
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~------------~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLD------------RQAHE 75 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHH------------HTCSE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhc------------cCCCE
Confidence 46788888888888 67788888888888888888888877877 677777776666665531 23344
Q ss_pred EeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEcc
Q 002097 332 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 411 (967)
Q Consensus 332 L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 411 (967)
|++++|.++++ |. ..++|++|+++
T Consensus 76 L~l~~~~l~~l----------------------------------------------------p~----~~~~L~~L~l~ 99 (454)
T 1jl5_A 76 LELNNLGLSSL----------------------------------------------------PE----LPPHLESLVAS 99 (454)
T ss_dssp EECTTSCCSCC----------------------------------------------------CS----CCTTCSEEECC
T ss_pred EEecCCccccC----------------------------------------------------CC----CcCCCCEEEcc
Confidence 44444333221 11 11345555555
Q ss_pred CCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCc
Q 002097 412 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 491 (967)
Q Consensus 412 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 491 (967)
+|.+++. +. .+++|++|++++|.+.+ ++.. .++|++|++++|.+++ +| .|+++++|++|++++|+++ .
T Consensus 100 ~n~l~~l-p~---~~~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~ 167 (454)
T 1jl5_A 100 CNSLTEL-PE---LPQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-K 167 (454)
T ss_dssp SSCCSSC-CC---CCTTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-C
T ss_pred CCcCCcc-cc---ccCCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-c
Confidence 5555542 21 23677788888877763 3321 2578888888888885 55 5788888888888888887 4
Q ss_pred cchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccC
Q 002097 492 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN 571 (967)
Q Consensus 492 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 571 (967)
+|.. ..+|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|... ++|++|++++|.+. .+|. ++.
T Consensus 168 lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~ 235 (454)
T 1jl5_A 168 LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQN 235 (454)
T ss_dssp CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTT
T ss_pred cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCC
Confidence 6643 3577777777777775 34 46777777777777777764 33322 46777777777766 4553 666
Q ss_pred CCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCc
Q 002097 572 LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 611 (967)
Q Consensus 572 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 611 (967)
+++|++|++++|++++ +|. .+++|+.|++++|.+.+
T Consensus 236 l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC
T ss_pred CCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc
Confidence 7777777777776664 232 13566666666666653
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-36 Score=343.17 Aligned_cols=247 Identities=23% Similarity=0.262 Sum_probs=102.1
Q ss_pred cceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCC-------------cEEEccCCcccCcC
Q 002097 353 FQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL-------------EFLYLVNDSLAGPF 419 (967)
Q Consensus 353 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------~~L~L~~n~l~~~~ 419 (967)
..|+++++++|. . +.+|..++++++|++|++++|.+.|.+|..+ +++++| ++|++++|.+++..
T Consensus 11 ~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccCc-h-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 356677774443 3 5667667777777777777776666666553 344433 55555555544422
Q ss_pred CCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhc
Q 002097 420 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 499 (967)
Q Consensus 420 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~ 499 (967)
. ..++|++|++++|.+++ +|.. +++|++|++++|.+++. +.. .++|++|++++|+++ .+|. +..
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~-~lp~--~~~ 151 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE-KLPE--LQN 151 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS-SCCC--CTT
T ss_pred C----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC-CCcc--cCC
Confidence 1 12445555555555543 3321 23455555555544431 111 134555555555554 2442 233
Q ss_pred CCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEE
Q 002097 500 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 579 (967)
Q Consensus 500 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 579 (967)
+++|++|++++|++++ +|.. .++|++|++++|.+++ +| .+.++++|++|++++|++++ +|... ++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEE
Confidence 4555555555555443 2221 1345555555555443 23 34445555555555555442 22211 3445555
Q ss_pred CCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCc
Q 002097 580 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 633 (967)
Q Consensus 580 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 633 (967)
+++|.+. .+| .+..+++|++|++++|++++ +|.. +.+|+.|++++|.+.
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC--CTTCCEEECCSSCCS
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc--ccccCEEECCCCccc
Confidence 5555444 233 24445555555555554443 2221 234444444444443
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=348.63 Aligned_cols=348 Identities=20% Similarity=0.175 Sum_probs=226.1
Q ss_pred cEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccC
Q 002097 455 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEG 534 (967)
Q Consensus 455 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 534 (967)
+.++.+++.++ .+|..+ .+++++|++++|+++ .++...+..+++|++|++++|.+.+..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 333332 134555555555555 33333333455555555555555544445555555555555555
Q ss_pred ccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCC
Q 002097 535 NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 614 (967)
Q Consensus 535 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 614 (967)
|.+++..+..|.++++|++|+|++|++.+..|..|..+++|++|++++|.+.+..+..|.++++|+.|++++|.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------ 163 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN------ 163 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC------
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc------
Confidence 55543333344455555555555555544444444555555555555555544444444455555555554444
Q ss_pred CCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCC
Q 002097 615 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 694 (967)
Q Consensus 615 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 694 (967)
+.+ ++...+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.+|.......+
T Consensus 164 -----------------l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 164 -----------------LTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp -----------------CSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred -----------------Ccc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 432 33336778888888888888888777777888888888888888877777777766778
Q ss_pred CCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccce
Q 002097 695 LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 774 (967)
Q Consensus 695 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 774 (967)
|+.|++++|++++..+..|..+ ++|+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHL-----------------------------------------------------VYLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTC-----------------------------------------------------TTCCE
T ss_pred ccEEECcCCcccccCHHHhcCc-----------------------------------------------------cccCe
Confidence 8888888888876554455443 37888
Q ss_pred EECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcC
Q 002097 775 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 854 (967)
Q Consensus 775 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 854 (967)
|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 88988888877777888889999999999999988888899999999999999999877777788888999999999999
Q ss_pred ccCCCCCcccccccCcccccCCcCCCCCCC
Q 002097 855 SGKIPEWTAQFATFNKSSYDGNPFLCGLPL 884 (967)
Q Consensus 855 ~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l 884 (967)
.|.++.. ..+.......+.++...|..|.
T Consensus 333 ~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 333 ACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp ECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred cCccchH-hHHhhhhccccCccCceeCCch
Confidence 8877641 1222333455677777887653
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-34 Score=331.02 Aligned_cols=347 Identities=25% Similarity=0.350 Sum_probs=220.7
Q ss_pred cCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCE
Q 002097 401 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 480 (967)
Q Consensus 401 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 480 (967)
.+++++.|++.++.+.... .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++..+ ++++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 3455666666666655422 24455566666666666553 332 2335556666666665554333 555556666
Q ss_pred EEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCc
Q 002097 481 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 560 (967)
Q Consensus 481 L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 560 (967)
|++++|.++ .++. +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+.++++|++|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 666666555 3333 33455555555555555532 1 24555555555554 2332221 24555555555555555
Q ss_pred CCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCccc
Q 002097 561 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 640 (967)
Q Consensus 561 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 640 (967)
+.+. ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+. +. ..
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~~---~~ 238 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------DI---GT 238 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------CC---GG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------cc---hh
Confidence 5432 224455555555555555544333 344455555555555443 21 15
Q ss_pred ccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccccccccc
Q 002097 641 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 720 (967)
Q Consensus 641 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 720 (967)
+..+++|+.|++++|.+++..| +..+++|++|++++|++.+..+ +..+++|+.|++++|++++..+ +..
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~----- 307 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN----- 307 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----
Confidence 6778888888888888886654 7888889999999888886544 7788889999999888876544 222
Q ss_pred ccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEE
Q 002097 721 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 800 (967)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 800 (967)
+++|+.|++++|++++..| +..+++|+.|+
T Consensus 308 ------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 308 ------------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp ------------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred ------------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 3478899999998887655 77889999999
Q ss_pred CcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccC
Q 002097 801 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 857 (967)
Q Consensus 801 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 857 (967)
+++|.+++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999998865 468888999999999999988777 78889999999999998873
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-34 Score=329.30 Aligned_cols=346 Identities=25% Similarity=0.345 Sum_probs=286.1
Q ss_pred CCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCc
Q 002097 376 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV 455 (967)
Q Consensus 376 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 455 (967)
.+++++.+++.++.+.. +|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence 35689999999998764 564 4689999999999999988765 8899999999999999985 443 44589999
Q ss_pred EEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCc
Q 002097 456 YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 535 (967)
Q Consensus 456 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 535 (967)
+|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++|+++ |.+.+.. .+..+++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 99999999996544 899999999999999998 5664 4569999999997 5555433 3889999999999999
Q ss_pred cccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCC
Q 002097 536 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 615 (967)
Q Consensus 536 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 615 (967)
.+.+. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|++.+. ..+..+++|+.|++++|.+.+..
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~-- 259 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA-- 259 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--
Confidence 98854 358899999999999999987655 77899999999999999854 46788999999999999886431
Q ss_pred CcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCC
Q 002097 616 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 695 (967)
Q Consensus 616 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 695 (967)
.+..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|
T Consensus 260 ------------------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 260 ------------------------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp ------------------------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred ------------------------hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 25667888888888888886544 7788888888888888886544 7788889
Q ss_pred CEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceE
Q 002097 696 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 775 (967)
Q Consensus 696 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 775 (967)
+.|++++|++++..| +.. +++|++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L 336 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRL 336 (466)
T ss_dssp SEEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEE
T ss_pred CEEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEe
Confidence 999999988877654 322 3478899
Q ss_pred ECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcc
Q 002097 776 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 832 (967)
Q Consensus 776 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 832 (967)
++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999988864 468889999999999999998877 8889999999999999886
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-34 Score=323.92 Aligned_cols=335 Identities=23% Similarity=0.220 Sum_probs=234.0
Q ss_pred CCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEE
Q 002097 475 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 554 (967)
Q Consensus 475 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 554 (967)
++++++|++++|.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 345666666666655 5665555556666666666666665555566666666666666666665555556666666666
Q ss_pred ECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcc
Q 002097 555 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 634 (967)
Q Consensus 555 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 634 (967)
++++|+++...+..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+++.. ...+++|+.+++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~- 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS- 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS-
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc-
Confidence 66666666443344566666666666666666655666666666666666666665431 222456666666666554
Q ss_pred cCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccc
Q 002097 635 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 714 (967)
Q Consensus 635 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 714 (967)
.+...++|+.|++++|.+... |. ...++|++|++++|++++. ..+..+++|++|++++|.+++..|..|.
T Consensus 200 -----~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 -----TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp -----EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred -----ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 233446788888888888744 32 2247888888888888753 5678888888888888888887777776
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCC
Q 002097 715 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 794 (967)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 794 (967)
.++ +|++|+|++|++++ +|..+..++
T Consensus 270 ~l~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 270 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp TCS-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCT
T ss_pred ccc-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCC
Confidence 533 78888888888884 566677889
Q ss_pred CCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCcccccccCccccc
Q 002097 795 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD 874 (967)
Q Consensus 795 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~ 874 (967)
+|+.|+|++|+++ .+|..++.+++|+.|++++|+++.. | +..+++|+.|++++|+++|.... ..+..+....+.
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~ 369 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD 369 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccc
Confidence 9999999999998 4566788889999999999998854 3 66788999999999999986543 456667777788
Q ss_pred CCcCCCCCC
Q 002097 875 GNPFLCGLP 883 (967)
Q Consensus 875 ~n~~lc~~~ 883 (967)
+++..|.++
T Consensus 370 ~~~~~c~~~ 378 (390)
T 3o6n_A 370 DADQHCKID 378 (390)
T ss_dssp CCCSCCCTT
T ss_pred ccCceeccc
Confidence 888888654
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=333.80 Aligned_cols=347 Identities=21% Similarity=0.186 Sum_probs=217.6
Q ss_pred EEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEccc
Q 002097 431 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 510 (967)
Q Consensus 431 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 510 (967)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|+|++|.++ .++...+..+++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence 4455555554 455433 246667777777776666666777777777777777766 34333344567777777777
Q ss_pred ccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCC
Q 002097 511 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 590 (967)
Q Consensus 511 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 590 (967)
|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|++++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 77765555566677777777777777776666677777777777777777776666677777777777777777776666
Q ss_pred ccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCC
Q 002097 591 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 670 (967)
Q Consensus 591 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 670 (967)
..+.++++|+.|++++|.+.+..+. .|..+++|+.|++++|...+.+|.......+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT------------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh------------------------hcccCcccceeeCCCCccccccCcccccCcc
Confidence 6677777777777777776543322 4445555555555555555444444444446
Q ss_pred CCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhh
Q 002097 671 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 750 (967)
Q Consensus 671 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (967)
|++|++++|++++..+..+..+++|+.|+|++|++++..+..|..++
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------------------------------- 272 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL--------------------------------- 272 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT---------------------------------
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc---------------------------------
Confidence 66666666666643334566666666666666666655555554422
Q ss_pred eeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcC
Q 002097 751 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 830 (967)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 830 (967)
.|++|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++
T Consensus 273 --------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 273 --------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp --------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred --------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 566666666666666666677777777777777777766666677777777777777777
Q ss_pred cccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 831 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 831 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
.+..+... -......+++.++...|..|.
T Consensus 333 ~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 333 ACDCRLLW-VFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp ECSGGGHH-HHTTTTSSCCTTCCCBEEESG
T ss_pred cCccchHh-HHhhhhccccCccCceeCCch
Confidence 65433211 112223344455555554443
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.7e-34 Score=326.00 Aligned_cols=357 Identities=16% Similarity=0.146 Sum_probs=191.2
Q ss_pred hccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCC
Q 002097 373 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 452 (967)
Q Consensus 373 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 452 (967)
.++.+++|++|++++|.+.+. | . ++.+++|++|++++|.+++. ++..+++|++|++++|.+++ ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~-------- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD-------- 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--------
T ss_pred ChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--------
Confidence 344455555555555554432 3 1 24455555555555555442 14444445555555554442 22
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceec
Q 002097 453 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 532 (967)
Q Consensus 453 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 532 (967)
++++++|++|++++|+++ .+| +..+++|++|++++|++++. .+..+++|++|++
T Consensus 102 -------------------~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l 155 (457)
T 3bz5_A 102 -------------------VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDC 155 (457)
T ss_dssp -------------------CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEEC
T ss_pred -------------------cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEEC
Confidence 444444444444444444 232 22344444444444444432 1334444444444
Q ss_pred cCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcC
Q 002097 533 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 612 (967)
Q Consensus 533 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 612 (967)
++|...+.+ .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++. .+..+++|+.|++++|++++
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 444333222 23444455555555555443 22 44444555555555544432 24444555555555555544
Q ss_pred CCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCC
Q 002097 613 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 692 (967)
Q Consensus 613 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 692 (967)
+| ...+++|+.|++++|.+.+. + +..+++|+.|++++| +|+.|++++|.+.+.+| ++.+
T Consensus 227 ip-~~~l~~L~~L~l~~N~l~~~-~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 227 ID-VTPLTQLTYFDCSVNPLTEL-D---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp CC-CTTCTTCSEEECCSSCCSCC-C---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTC
T ss_pred cC-ccccCCCCEEEeeCCcCCCc-C---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccc
Confidence 22 22244444444444444432 1 233455555555443 34455566666555554 3456
Q ss_pred CCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhccc
Q 002097 693 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 772 (967)
Q Consensus 693 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 772 (967)
++|+.|++++|+..+.+|.....+.. +. ....++|
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~----------------------------------L~-----------l~~~~~L 320 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITE----------------------------------LD-----------LSQNPKL 320 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSC----------------------------------CC-----------CTTCTTC
T ss_pred ccCCEEECCCCcccceeccCCCcceE----------------------------------ec-----------hhhcccC
Confidence 66666666666655555432221110 00 0012379
Q ss_pred ceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCC
Q 002097 773 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 852 (967)
Q Consensus 773 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 852 (967)
++|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|.++|. ..+..|..+++++|
T Consensus 321 ~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 321 VYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN 384 (457)
T ss_dssp CEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred CEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence 9999999999974 3 8999999999999999986 24677788999999986 34567888999999
Q ss_pred cCccCCCCC
Q 002097 853 NLSGKIPEW 861 (967)
Q Consensus 853 ~l~~~~p~~ 861 (967)
+++|.+|..
T Consensus 385 ~l~g~ip~~ 393 (457)
T 3bz5_A 385 SLTIAVSPD 393 (457)
T ss_dssp BEEEECCTT
T ss_pred cEEEEcChh
Confidence 999999974
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4e-34 Score=338.12 Aligned_cols=335 Identities=23% Similarity=0.223 Sum_probs=239.0
Q ss_pred CCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEE
Q 002097 475 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 554 (967)
Q Consensus 475 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 554 (967)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345556666666555 5555555556666666666666665555566666666666666666665555556666666666
Q ss_pred ECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcc
Q 002097 555 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 634 (967)
Q Consensus 555 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 634 (967)
+|++|.+++..+..|+++++|++|++++|.+.+..|..|.++++|+.|++++|.+++.. ...+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~- 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS- 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS-
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc-
Confidence 66666666444444566666666666666666666666666666666666666665431 122456666666666554
Q ss_pred cCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccc
Q 002097 635 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 714 (967)
Q Consensus 635 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 714 (967)
.+...++|+.|++++|.+....+. + .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|.
T Consensus 206 -----~l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 -----TLAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp -----EEECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred -----cccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 234456788888888888744322 2 3678899999998885 36788889999999999999888887776
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCC
Q 002097 715 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 794 (967)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 794 (967)
.++ +|+.|+|++|.+++ +|..+..++
T Consensus 276 ~l~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 276 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp TCS-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCT
T ss_pred Ccc-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCC
Confidence 644 78999999999985 577778899
Q ss_pred CCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCcccccccCccccc
Q 002097 795 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD 874 (967)
Q Consensus 795 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~ 874 (967)
+|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|+++|.++. ..+..+....+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~ 375 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD 375 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccc
Confidence 9999999999999 5777888899999999999999855 3 56788999999999999987654 467777778889
Q ss_pred CCcCCCCCC
Q 002097 875 GNPFLCGLP 883 (967)
Q Consensus 875 ~n~~lc~~~ 883 (967)
+++..|+.+
T Consensus 376 ~~~~~C~~~ 384 (597)
T 3oja_B 376 DADQHCKID 384 (597)
T ss_dssp CCCCCCCTT
T ss_pred cccccCCcc
Confidence 999999864
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.1e-33 Score=317.26 Aligned_cols=356 Identities=19% Similarity=0.179 Sum_probs=289.1
Q ss_pred ccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccE
Q 002097 352 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 431 (967)
Q Consensus 352 ~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 431 (967)
.++|++|++++|.. .+ +| .+..+++|++|++++|.+.+. | ++.+++|++|++++|.+++. ++..+++|++
T Consensus 41 l~~L~~L~Ls~n~l-~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSI-TD-MT-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCC-CC-CT-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCE
T ss_pred cCCCCEEEccCCCc-cc-Ch-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee---ecCCCCcCCE
Confidence 46899999966643 33 35 588999999999999998874 4 47899999999999999985 3788999999
Q ss_pred EEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccc
Q 002097 432 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 511 (967)
Q Consensus 432 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n 511 (967)
|++++|.+++ ++ ...+++|++|++++|.+++. + ++.+++|++|++++|+..+.++ +..+++|++|++++|
T Consensus 111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN 180 (457)
T ss_dssp EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred EECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence 9999999985 55 34578999999999999974 3 8889999999999996655664 345899999999999
Q ss_pred cccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCc
Q 002097 512 SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 591 (967)
Q Consensus 512 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 591 (967)
++++. | +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++..
T Consensus 181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence 99874 3 78899999999999999865 38889999999999999997 56 888999999999999998754
Q ss_pred cccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCC
Q 002097 592 EFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 671 (967)
Q Consensus 592 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 671 (967)
+..+++|+.|++++|+ |+.+++++|.+.+.+| +..+++|+.|++++|...+.+|. ..++|
T Consensus 250 -~~~l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQTD-------------LLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp -CTTCTTCCEEECTTCC-------------CSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred -HHHCCCCCEEeccCCC-------------CCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc---CCCcc
Confidence 4567889999988764 4567788888777775 46788999999999988777764 34556
Q ss_pred CEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhhe
Q 002097 672 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 751 (967)
Q Consensus 672 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (967)
+.|++++| ++|++|++++|++++. + +..
T Consensus 310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~------------------------------------ 337 (457)
T 3bz5_A 310 TELDLSQN-------------PKLVYLYLNNTELTEL-D--VSH------------------------------------ 337 (457)
T ss_dssp SCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTT------------------------------------
T ss_pred eEechhhc-------------ccCCEEECCCCccccc-c--ccc------------------------------------
Confidence 66655554 6889999999998874 2 433
Q ss_pred eeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCc
Q 002097 752 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 831 (967)
Q Consensus 752 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 831 (967)
++.|+.|++++|++++ ++.|+.|++++|.++|. ..+..|+.+++++|+++
T Consensus 338 -----------------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 338 -----------------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp -----------------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred -----------------CCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence 3379999999999985 24677788999999876 34566888899999999
Q ss_pred ccCCccccC
Q 002097 832 GKIPRQLVD 840 (967)
Q Consensus 832 ~~~p~~l~~ 840 (967)
|.+|..+..
T Consensus 388 g~ip~~~~~ 396 (457)
T 3bz5_A 388 IAVSPDLLD 396 (457)
T ss_dssp EECCTTCBC
T ss_pred EEcChhHhc
Confidence 999976544
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.5e-34 Score=306.71 Aligned_cols=260 Identities=34% Similarity=0.559 Sum_probs=220.9
Q ss_pred CCCcEEECcCCcCCC--CCCccccCCCCCCEEECCC-CccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEE
Q 002097 549 SSLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 625 (967)
Q Consensus 549 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 625 (967)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence 356777777777776 6677777777777777774 77777777777777777777777777664433
Q ss_pred EccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCC-CCCEEECCCCc
Q 002097 626 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN-QLQLLDLSDNN 704 (967)
Q Consensus 626 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~ 704 (967)
. .+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus 119 ------------~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 119 ------------D-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ------------G-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ------------H-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 3 667788888888888888888888899999999999999999888899998888 89999999999
Q ss_pred CcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccC
Q 002097 705 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 784 (967)
Q Consensus 705 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 784 (967)
+++.+|..+..+ .|++|++++|.+++
T Consensus 186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG 211 (313)
T ss_dssp EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence 988888776542 38899999999999
Q ss_pred CCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCccc
Q 002097 785 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 864 (967)
Q Consensus 785 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 864 (967)
.+|..|..+++|+.|+|++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. ..
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 9999999999999999999999987776 888999999999999999999999999999999999999999999996 78
Q ss_pred ccccCcccccCCcCCCCCCCCCCC
Q 002097 865 FATFNKSSYDGNPFLCGLPLPICR 888 (967)
Q Consensus 865 ~~~~~~~~~~~n~~lc~~~l~~c~ 888 (967)
+.++....+.+||++||.|+..|.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred ccccChHHhcCCCCccCCCCCCCC
Confidence 999999999999999998877773
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.1e-32 Score=303.35 Aligned_cols=335 Identities=22% Similarity=0.251 Sum_probs=232.0
Q ss_pred CCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcE
Q 002097 426 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 505 (967)
Q Consensus 426 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 505 (967)
+++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|+++ .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 466777777777776 566666666777777777777777666667777777777777777776 444444455677777
Q ss_pred EEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCcc
Q 002097 506 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 585 (967)
Q Consensus 506 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 585 (967)
|++++|.+....+..|..+++|++|++++|.+.+..|..+.++++|++|++++|++++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777776644444456666666666666666655555566666666666666666532 134455566666666555
Q ss_pred ccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhh
Q 002097 586 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 665 (967)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 665 (967)
.+. ...++|+.|++++|.+. .. +. ...++|+.|++++|.+++. .++
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~-----------------------~~-~~---~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSIN-----------------------VV-RG---PVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCC-----------------------EE-EC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred ccc-----CCCCcceEEECCCCeee-----------------------ec-cc---cccccccEEECCCCCCccc--HHH
Confidence 421 22334555555555443 22 22 2246899999999999864 578
Q ss_pred hCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCch
Q 002097 666 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 745 (967)
Q Consensus 666 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (967)
..+++|++|++++|.+++..|..+..+++|+.|++++|++++.. ..+..
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~------------------------------ 293 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQP------------------------------ 293 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE-CSSSC------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC-cccCC------------------------------
Confidence 88999999999999999888999999999999999999987643 22222
Q ss_pred hhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEEC
Q 002097 746 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 825 (967)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 825 (967)
+++|++|++++|+++ .+|..+..+++|+.|+|++|.+++. | +..+++|+.|++
T Consensus 294 -----------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 294 -----------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp -----------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred -----------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 348999999999998 5777889999999999999999865 3 777899999999
Q ss_pred cCCcCcccCCccccCCCcCCeEecCCCcCccCCC
Q 002097 826 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 859 (967)
Q Consensus 826 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 859 (967)
++|++.+.....+ +..+....+..+...|..|
T Consensus 347 ~~N~~~~~~~~~~--~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 347 SHNDWDCNSLRAL--FRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSSCEEHHHHHHH--TTTCCTTTBCCCCSCCCTT
T ss_pred CCCCccchhHHHH--HHHHHhhcccccCceeccc
Confidence 9999987543322 2333333445555444443
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-31 Score=294.54 Aligned_cols=304 Identities=22% Similarity=0.342 Sum_probs=224.2
Q ss_pred CCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccce
Q 002097 451 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 530 (967)
Q Consensus 451 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 530 (967)
+++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++. +..+++|++|++++|.+... ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 5788888888888774 33 3777888888888888887 5555 45578888888888877753 357777777777
Q ss_pred eccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCC
Q 002097 531 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 610 (967)
Q Consensus 531 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 610 (967)
++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 7777777643 22 6677777777777775553333 36777777777777777664433 666777777777777664
Q ss_pred cCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhcc
Q 002097 611 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 690 (967)
Q Consensus 611 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 690 (967)
+. + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +.
T Consensus 191 ~~------------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 DI------------------------S--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred cc------------------------c--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 21 1 25667888888888888876544 7788888888888888875443 78
Q ss_pred CCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhc
Q 002097 691 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 770 (967)
Q Consensus 691 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 770 (967)
.+++|++|++++|.+++. +.+.. ++
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~ 265 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT 265 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence 888888888888887653 12222 34
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
+|++|++++|.+++. +.+..+++|+.|++++|.+++..|..++.+++|+.|++++|++++..| +..+++|+.++++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 788899999988854 458888999999999999998888889999999999999999987666 7888999999999
Q ss_pred CCcCc
Q 002097 851 YNNLS 855 (967)
Q Consensus 851 ~N~l~ 855 (967)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 99875
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.6e-31 Score=291.72 Aligned_cols=307 Identities=26% Similarity=0.362 Sum_probs=254.4
Q ss_pred cCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCC
Q 002097 423 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN 502 (967)
Q Consensus 423 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 502 (967)
+..+++|++|+++++.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence 346789999999999997 4553 3448999999999999996544 899999999999999998 6653 556999
Q ss_pred CcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCC
Q 002097 503 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 582 (967)
Q Consensus 503 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 582 (967)
|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 9999999999986544 8899999999999997665544 48999999999999999985544 88999999999999
Q ss_pred CccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcc
Q 002097 583 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 662 (967)
Q Consensus 583 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 662 (967)
|.+.+..+ +..+++|+.+++++|.+.+.. .+..+++|++|++++|++++..+
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDIT--------------------------PVANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------------------------GGGGCTTCCEEECCSSCCCCCGG
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCc--------------------------hhhcCCcCCEEEccCCccCCCcc
Confidence 99986544 888999999999999886321 25667888888888888886544
Q ss_pred hhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCC
Q 002097 663 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 742 (967)
Q Consensus 663 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (967)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------------------------- 285 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN--------------------------- 285 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG---------------------------
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC---------------------------
Confidence 88889999999999988853 4688899999999999988764 12322
Q ss_pred CchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCE
Q 002097 743 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 822 (967)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 822 (967)
+++|++|++++|.+++..|..+..+++|+.|++++|.+++..| ++.+++|++
T Consensus 286 --------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 286 --------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp --------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred --------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 3489999999999998888889999999999999999998776 888999999
Q ss_pred EECcCCcCc
Q 002097 823 LDLSYNKLS 831 (967)
Q Consensus 823 L~Ls~N~l~ 831 (967)
||+++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999886
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.8e-31 Score=315.47 Aligned_cols=314 Identities=22% Similarity=0.263 Sum_probs=231.3
Q ss_pred CCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcE
Q 002097 426 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 505 (967)
Q Consensus 426 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 505 (967)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|+.+++|++|+|++|.++ .+|...+..+++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 456777777777776 566666666778888888888887777777777888888888888777 455555556777777
Q ss_pred EEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCcc
Q 002097 506 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 585 (967)
Q Consensus 506 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 585 (967)
|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++.. ++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 777777777555555666777777777777776666666667777777777777666432 34456666666666655
Q ss_pred ccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhh
Q 002097 586 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 665 (967)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 665 (967)
.+ +...++|+.|++++|.+.. . +. ...++|+.|+|++|.+++ +.++
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~-----------------------~-~~---~~~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINV-----------------------V-RG---PVNVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCE-----------------------E-EC---SCCSCCCEEECCSSCCCC--CGGG
T ss_pred cc-----ccCCchhheeeccCCcccc-----------------------c-cc---ccCCCCCEEECCCCCCCC--Chhh
Confidence 43 2233456666666655542 1 11 112578999999999886 3678
Q ss_pred hCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCch
Q 002097 666 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 745 (967)
Q Consensus 666 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (967)
..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+++. |..+..
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~------------------------------ 299 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQP------------------------------ 299 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSC------------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cccccc------------------------------
Confidence 8999999999999999988899999999999999999998874 332222
Q ss_pred hhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEEC
Q 002097 746 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 825 (967)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 825 (967)
+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.. ++.+++|+.|++
T Consensus 300 -----------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 300 -----------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp -----------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred -----------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 348999999999998 68888999999999999999998653 677889999999
Q ss_pred cCCcCcccCCc
Q 002097 826 SYNKLSGKIPR 836 (967)
Q Consensus 826 s~N~l~~~~p~ 836 (967)
++|++++..+.
T Consensus 353 ~~N~~~~~~~~ 363 (597)
T 3oja_B 353 SHNDWDCNSLR 363 (597)
T ss_dssp CSSCEEHHHHH
T ss_pred eCCCCCChhHH
Confidence 99999876443
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5e-32 Score=292.45 Aligned_cols=251 Identities=30% Similarity=0.504 Sum_probs=178.8
Q ss_pred cccceeccCccccc--cCCccCcCCCCCcEEECcC-CcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEE
Q 002097 526 NLRWLLLEGNHFVG--EIPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 602 (967)
Q Consensus 526 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 602 (967)
+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++++.+|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555555 5555555566666666653 55555566666666666666666666665666666666666666
Q ss_pred eCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCC-CCCEEEcCCCcC
Q 002097 603 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS-QLSHLNLAHNNL 681 (967)
Q Consensus 603 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 681 (967)
++++|.+.+.+|. .+..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus 131 ~Ls~N~l~~~~p~------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLPP------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCCG------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCCh------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 6666665543332 455556666666666666666666666666 777777777777
Q ss_pred cccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccc
Q 002097 682 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 761 (967)
Q Consensus 682 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (967)
++.+|..+..++ |++|++++|.+++.+|..|..++
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------------------- 221 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-------------------------------------------- 221 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence 777777777776 77777777777777666665533
Q ss_pred cccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCC
Q 002097 762 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 841 (967)
Q Consensus 762 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 841 (967)
+|+.|++++|.+++.+|. +..+++|++|+|++|.+++.+|..|+.+++|+.|+|++|+++|.+|.. ..+
T Consensus 222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 778888888888766555 788899999999999999999999999999999999999999999987 888
Q ss_pred CcCCeEecCCCc-Ccc
Q 002097 842 NTLAIFIVAYNN-LSG 856 (967)
Q Consensus 842 ~~L~~l~ls~N~-l~~ 856 (967)
++|+.+++++|+ +.|
T Consensus 291 ~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGSCGGGTCSSSEEES
T ss_pred cccChHHhcCCCCccC
Confidence 999999999998 554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4e-30 Score=280.82 Aligned_cols=291 Identities=24% Similarity=0.322 Sum_probs=207.8
Q ss_pred CCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEEC
Q 002097 477 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 556 (967)
Q Consensus 477 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 556 (967)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4666666666666 566544 356777777777777666666777777777777777777666777777777888888
Q ss_pred cCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccC
Q 002097 557 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 636 (967)
Q Consensus 557 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 636 (967)
++|+++ .+|..+. ++|++|++++|++.+..+..|.++++|+.|++++|.+... + +
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~-~ 162 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------G-I 162 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------G-B
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------C-c
Confidence 877776 4555443 6788888888887777777777788888888887776521 1 1
Q ss_pred CcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccccc
Q 002097 637 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 716 (967)
Q Consensus 637 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 716 (967)
....+..+++|++|++++|.++. +|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 11256667777777777777764 343332 678888888888877777778888888888888888877766655543
Q ss_pred ccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCC
Q 002097 717 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 796 (967)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 796 (967)
++|++|++++|+++ .+|..+..+++|
T Consensus 240 -----------------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 240 -----------------------------------------------------PHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp -----------------------------------------------------TTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred -----------------------------------------------------CCCCEEECCCCcCc-cCChhhccCCCc
Confidence 37888888888887 677778888888
Q ss_pred CEEECcCccccccCcccccCC------CCCCEEECcCCcCcc--cCCccccCCCcCCeEecCCCc
Q 002097 797 QTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLSG--KIPRQLVDLNTLAIFIVAYNN 853 (967)
Q Consensus 797 ~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~l~ls~N~ 853 (967)
++|++++|++++..+..|... ++|+.|++++|++.. ..|..+..+..++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888887777777543 678888888888864 556777888888888888874
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2e-30 Score=283.37 Aligned_cols=288 Identities=22% Similarity=0.289 Sum_probs=199.9
Q ss_pred CCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEEC
Q 002097 477 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 556 (967)
Q Consensus 477 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 556 (967)
+++.++++++.++ .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777776 677655 357788888888877766777778888888888888887777777888888888888
Q ss_pred cCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCc--CCCCCcCCCcccEEEccCCcCcc
Q 002097 557 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG--SLPSCFYPLSIKQVHLSKNMLHG 634 (967)
Q Consensus 557 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~l~~n~~~~ 634 (967)
++|+++ .+|..+. ++|++|++++|++.+..+..|.++++|+.|++++|.+.. ..+.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------- 167 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG------------------- 167 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-------------------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-------------------
Confidence 888887 4555444 778888888888877666777888888888888887752 2222
Q ss_pred cCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccc
Q 002097 635 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 714 (967)
Q Consensus 635 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 714 (967)
.+..+ +|++|++++|++++ +|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 168 -----~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 168 -----AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -----SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -----cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 33444 56666666666653 333222 5666677777777666666666777777777777777666555554
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCC
Q 002097 715 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 794 (967)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 794 (967)
.+ ++|++|++++|+++ .+|..+..++
T Consensus 239 ~l-----------------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 239 FL-----------------------------------------------------PTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp GC-----------------------------------------------------TTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred CC-----------------------------------------------------CCCCEEECCCCcCe-ecChhhhcCc
Confidence 42 26777777777776 5666777777
Q ss_pred CCCEEECcCccccccCcccccCC------CCCCEEECcCCcCc--ccCCccccCCCcCCeEecCCCc
Q 002097 795 RIQTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNN 853 (967)
Q Consensus 795 ~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~l~ls~N~ 853 (967)
+|+.|++++|.+++..+..|... .+|+.|++++|++. +..|..+..++.|+.+++++|.
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 78888888888777766666553 56778888888776 5666777777888888887774
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.6e-33 Score=323.99 Aligned_cols=280 Identities=21% Similarity=0.170 Sum_probs=172.2
Q ss_pred CCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCC----CCcccccCCCCCCEEEccCCcCCCccchhHhhcCC-
Q 002097 427 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV- 501 (967)
Q Consensus 427 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~- 501 (967)
+++++|++++|.++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5678888888887754444445567889999999998874 34667778889999999999887545555555566
Q ss_pred ---CCcEEEcccccccc----cccccccCCccccceeccCccccccCCccC-----cCCCCCcEEECcCCcCCCCC----
Q 002097 502 ---NLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQSL-----SKCSSLKGLYLNNNNLSGKI---- 565 (967)
Q Consensus 502 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~---- 565 (967)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 457778888888888888888765433222 23567888888888887533
Q ss_pred CccccCCCCCCEEECCCCccccCCCcccc-----CCCCCCEEeCcCCcCCcC----CCCCcC-CCcccEEEccCCcCccc
Q 002097 566 PRWLGNLKGLQHIVMPKNHLEGPIPVEFC-----RLDSLQILDISDNNISGS----LPSCFY-PLSIKQVHLSKNMLHGQ 635 (967)
Q Consensus 566 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~-~~~L~~L~l~~n~~~~~ 635 (967)
+..+..+++|++|++++|.+....+..+. ..++|+.|++++|.+++. ++..+. +++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44556678888888888887654444433 356788888888877642 122111 34455555555444321
Q ss_pred C----CcccccCCCCCcEEECcCccCCCC----cchhhhCCCCCCEEEcCCCcCcccCChhccC-----CCCCCEEECCC
Q 002097 636 L----KEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-----LNQLQLLDLSD 702 (967)
Q Consensus 636 ~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~ 702 (967)
. ....+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 111122344555555555554432 3334444455555555555544332222221 13455555555
Q ss_pred CcCc
Q 002097 703 NNLH 706 (967)
Q Consensus 703 n~l~ 706 (967)
|.++
T Consensus 323 n~l~ 326 (461)
T 1z7x_W 323 CSFT 326 (461)
T ss_dssp SCCB
T ss_pred CCCc
Confidence 5443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-29 Score=277.20 Aligned_cols=251 Identities=29% Similarity=0.336 Sum_probs=182.0
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceec
Q 002097 453 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 532 (967)
Q Consensus 453 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 532 (967)
+++.++++++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666666 444443 256777777777776 454444455777777777777777666777777778888888
Q ss_pred cCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccc--cCCCccccCCCCCCEEeCcCCcCC
Q 002097 533 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISDNNIS 610 (967)
Q Consensus 533 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~ 610 (967)
++|.++ .+|..+. ++|++|++++|++.+..+..+..+++|++|++++|.++ +..+..+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 888777 4454443 68888888888888666667888888888888888885 3667777777 8888888888887
Q ss_pred cCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhcc
Q 002097 611 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 690 (967)
Q Consensus 611 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 690 (967)
+ +|..+. ++|++|++++|.+.+..+. .+..+++|+.|++++|++++..+.++..+++|++|++++|+++ .+|..+.
T Consensus 186 ~-l~~~~~-~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP-ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC-SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc-CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 5 443332 5677777777777654444 6777888888888888888777777888888888888888887 6777778
Q ss_pred CCCCCCEEECCCCcCcccCCCcccc
Q 002097 691 RLNQLQLLDLSDNNLHGLIPSCFDN 715 (967)
Q Consensus 691 ~l~~L~~L~Ls~n~l~~~~~~~~~~ 715 (967)
.+++|++|++++|++++..+..|..
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccc
Confidence 8888888888888887766666544
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.3e-29 Score=274.82 Aligned_cols=230 Identities=25% Similarity=0.314 Sum_probs=143.4
Q ss_pred CCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEEC
Q 002097 477 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 556 (967)
Q Consensus 477 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 556 (967)
.+++|++++|+++ .++...+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+. ++|++|++
T Consensus 53 ~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 4444445444444 333333333455555555555555444555555555666666665555 3343332 56777777
Q ss_pred cCCcCCCCCCccccCCCCCCEEECCCCcccc--CCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcc
Q 002097 557 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 634 (967)
Q Consensus 557 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 634 (967)
++|++++..+..+.++++|++|++++|.+.. ..+..+.++++|+.|++++|.+.+ +|.... ++|++|++++|.+.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITK 206 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCE
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCc
Confidence 7777766555666777777777777776642 556667777777777777777763 333222 456666666666554
Q ss_pred cCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccc
Q 002097 635 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 714 (967)
Q Consensus 635 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 714 (967)
..+. .+..+++|++|++++|.+++..+.++..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 207 ~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 207 VDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp ECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred cCHH-HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 4443 6677777777777777777666667777777777777777777 5666777777777777777777766655554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.7e-32 Score=315.36 Aligned_cols=390 Identities=18% Similarity=0.107 Sum_probs=254.6
Q ss_pred CccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCc----CCCCcCCCCCccEEEecCCcCCcCCChhhhhcCC--
Q 002097 379 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP----FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP-- 452 (967)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-- 452 (967)
+++.|+++++.+.......++..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 3455555555554433333345666677777777666532 2334556677888888888876544555555555
Q ss_pred --CCcEEECcCCCCCC----CCcccccCCCCCCEEEccCCcCCCccchhHhh----cCCCCcEEEcccccccccc----c
Q 002097 453 --SLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM----CCVNLEFLSLSNNSLKGHI----F 518 (967)
Q Consensus 453 --~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~----~l~~L~~L~L~~n~l~~~~----~ 518 (967)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 69999999998884 45778888999999999999887443433332 2457999999999887643 4
Q ss_pred ccccCCccccceeccCccccccCCccCc-----CCCCCcEEECcCCcCCCC----CCccccCCCCCCEEECCCCccccCC
Q 002097 519 SRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGK----IPRWLGNLKGLQHIVMPKNHLEGPI 589 (967)
Q Consensus 519 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~ 589 (967)
..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 5566678888888888887654333332 255788888888888753 4566667788888888888776432
Q ss_pred -----CccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchh
Q 002097 590 -----PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 664 (967)
Q Consensus 590 -----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 664 (967)
+..+..+++|+.|++++|.+++... ..++. .+..+++|++|++++|.+++..+..
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHHH
Confidence 2223356777777777777653100 01232 4666888999999999887654444
Q ss_pred hhC-----CCCCCEEEcCCCcCccc----CChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccc
Q 002097 665 IDG-----LSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS 735 (967)
Q Consensus 665 ~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (967)
+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+...-
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l------------------ 365 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL------------------ 365 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH------------------
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH------------------
Confidence 433 36899999999998865 456677789999999999988755433322100
Q ss_pred cccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccC----CCcccccCCCCCCEEECcCccccccCc
Q 002097 736 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG----HIPPQIGNLTRIQTLNLSHNNLTGTIP 811 (967)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p 811 (967)
....+.|++|++++|.+++ .+|..+..+++|++|++++|++++...
T Consensus 366 ------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 366 ------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp ------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred ------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 0002367777777777775 566667777777777777777765422
Q ss_pred cccc-----CCCCCCEEECcCCcCcccCCc
Q 002097 812 LTFS-----NLRHIESLDLSYNKLSGKIPR 836 (967)
Q Consensus 812 ~~~~-----~l~~L~~L~Ls~N~l~~~~p~ 836 (967)
..+. ....|+.|++.++.+....++
T Consensus 416 ~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 416 LQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred HHHHHHhccCCcchhheeecccccCHHHHH
Confidence 2221 234566666666665544333
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.9e-28 Score=261.30 Aligned_cols=250 Identities=22% Similarity=0.295 Sum_probs=179.5
Q ss_pred ceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccC--CCccccCCCCCCEEeCcC
Q 002097 529 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP--IPVEFCRLDSLQILDISD 606 (967)
Q Consensus 529 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~ 606 (967)
.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|++... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4455555554 3343332 4566666666666644444456666666666666666522 244555566666666666
Q ss_pred CcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcc-hhhhCCCCCCEEEcCCCcCcccC
Q 002097 607 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEV 685 (967)
Q Consensus 607 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 685 (967)
|.+.+ ++. .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus 88 n~i~~------------------------l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVIT------------------------MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEEE------------------------EEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred Ccccc------------------------Chh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 66541 222 45667777777777777775544 56777788888888888887777
Q ss_pred ChhccCCCCCCEEECCCCcCcc-cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeecccccccc
Q 002097 686 PIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 764 (967)
Q Consensus 686 ~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (967)
+..+..+++|++|++++|.+++ ..|..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------------------------------------------------ 174 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL------------------------------------------------ 174 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTC------------------------------------------------
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhC------------------------------------------------
Confidence 7778888888888888888776 455555543
Q ss_pred chhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCC-Cc
Q 002097 765 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NT 843 (967)
Q Consensus 765 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~ 843 (967)
++|++|++++|.+++..|..|..+++|+.|+|++|.+++..+..++.+++|+.||+++|++++..|..+..+ ++
T Consensus 175 -----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 175 -----RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp -----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred -----cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 378888888888887778888888899999999999988877788888999999999999998888888888 48
Q ss_pred CCeEecCCCcCccCCC
Q 002097 844 LAIFIVAYNNLSGKIP 859 (967)
Q Consensus 844 L~~l~ls~N~l~~~~p 859 (967)
|++|++++|+++|.++
T Consensus 250 L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 250 LAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCEEECTTCCEECSGG
T ss_pred CCEEEccCCCeecccC
Confidence 9999999999988765
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=270.35 Aligned_cols=283 Identities=22% Similarity=0.232 Sum_probs=179.4
Q ss_pred CCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEE
Q 002097 475 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 554 (967)
Q Consensus 475 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 554 (967)
++.....+.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344445677777776 677654 3567777777777776555567777777777777777776666667777777777
Q ss_pred ECcCCcCCCCCCccccCCCCCCEEECCCCccccCCC-ccccCCCCCCEEeCcCCc-CCcCCCCCcCCCcccEEEccCCcC
Q 002097 555 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNN-ISGSLPSCFYPLSIKQVHLSKNML 632 (967)
Q Consensus 555 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~l~~n~~ 632 (967)
++++|++++..+..++++++|++|++++|++.+..+ ..+.++++|++|++++|. +.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------- 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------- 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence 777777775444456677777777777777764433 356666777777776663 32
Q ss_pred cccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCc
Q 002097 633 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 712 (967)
Q Consensus 633 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 712 (967)
.++...|..+++|++|++++|++++..|..+..+++|++|++++|++....+..+..+++|+.|++++|.+++..+..
T Consensus 164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 222225666777777777777777766777777777777777777776433333445777777777777776544332
Q ss_pred ccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccC
Q 002097 713 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 792 (967)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 792 (967)
+.. ...
T Consensus 242 l~~--------------------------------------------------------------------------~~~ 247 (353)
T 2z80_A 242 LST--------------------------------------------------------------------------GET 247 (353)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ccc--------------------------------------------------------------------------ccc
Confidence 211 011
Q ss_pred CCCCCEEECcCccccc----cCcccccCCCCCCEEECcCCcCcccCCcc-ccCCCcCCeEecCCCcCccCCCC
Q 002097 793 LTRIQTLNLSHNNLTG----TIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 793 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
...++.++|+++.+++ .+|..++.+++|++||+++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 2233344444444333 35566666777777777777776 44444 46677777777777777776663
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3e-28 Score=268.57 Aligned_cols=256 Identities=21% Similarity=0.239 Sum_probs=152.9
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccC
Q 002097 550 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 629 (967)
Q Consensus 550 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 629 (967)
+|++|++++|.+++..+..+.++++|++|++++|++++..+..|.++++|++|++++|.+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------ 114 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN------------------ 114 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS------------------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc------------------
Confidence 45555555555544333345555555555555555554444555555555555555555442
Q ss_pred CcCcccCCcccccCCCCCcEEECcCccCCCCcc-hhhhCCCCCCEEEcCCC-cCcccCChhccCCCCCCEEECCCCcCcc
Q 002097 630 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHN-NLEGEVPIQLCRLNQLQLLDLSDNNLHG 707 (967)
Q Consensus 630 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 707 (967)
++...|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+++
T Consensus 115 ------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 115 ------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp ------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 111124444445555555554443222 24455555555555555 2443344455555555555555555555
Q ss_pred cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCc
Q 002097 708 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 787 (967)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 787 (967)
..|..+..++ +|++|++++|.+....+
T Consensus 189 ~~~~~l~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 189 YEPKSLKSIQ-----------------------------------------------------NVSHLILHMKQHILLLE 215 (353)
T ss_dssp ECTTTTTTCS-----------------------------------------------------EEEEEEEECSCSTTHHH
T ss_pred cCHHHHhccc-----------------------------------------------------cCCeecCCCCccccchh
Confidence 5555444322 55566666666543222
Q ss_pred ccccCCCCCCEEECcCccccccCccccc---CCCCCCEEECcCCcCcc----cCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 788 PQIGNLTRIQTLNLSHNNLTGTIPLTFS---NLRHIESLDLSYNKLSG----KIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 788 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
..+..+++|+.|++++|.+++..+..+. ..+.++.+++++|.+++ .+|..+..+++|+.|++++|+++ .+|.
T Consensus 216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~ 294 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD 294 (353)
T ss_dssp HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT
T ss_pred hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH
Confidence 2244566777777777777765554433 46778999999999987 47888999999999999999999 5665
Q ss_pred C-cccccccCcccccCCcCCCCCC
Q 002097 861 W-TAQFATFNKSSYDGNPFLCGLP 883 (967)
Q Consensus 861 ~-~~~~~~~~~~~~~~n~~lc~~~ 883 (967)
+ +..+.++....+.+||+.|.||
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCCCCCEEEeeCCCccCcCC
Confidence 4 4678888999999999999886
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=9.2e-28 Score=259.12 Aligned_cols=169 Identities=22% Similarity=0.302 Sum_probs=118.2
Q ss_pred cccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcc-cCChhccCCCCCCEEECCCCcCcccCCCccccccc
Q 002097 640 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 718 (967)
Q Consensus 640 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 718 (967)
.+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 199 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS- 199 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-
Confidence 34455566666666666665556666666777777777777665 4566677777777777777777766666655433
Q ss_pred ccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCE
Q 002097 719 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 798 (967)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 798 (967)
+|++|++++|.+++..+..+..+++|+.
T Consensus 200 ----------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 200 ----------------------------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp ----------------------------------------------------TCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred ----------------------------------------------------CCCEEECCCCccCccChhhccCcccCCE
Confidence 6777777777777666667888888888
Q ss_pred EECcCccccccCcccccCC-CCCCEEECcCCcCcccCC--ccccCCCcCCeEecCCCcCccCCCCC
Q 002097 799 LNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLSGKIP--RQLVDLNTLAIFIVAYNNLSGKIPEW 861 (967)
Q Consensus 799 L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~l~ls~N~l~~~~p~~ 861 (967)
|+|++|.+++..|..+..+ ++|++|+|++|++++..+ .....+...+.+.+..+.+.|..|..
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 8888888888888888887 488888898888886543 11223344555667778888887764
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.2e-26 Score=262.51 Aligned_cols=233 Identities=22% Similarity=0.194 Sum_probs=156.0
Q ss_pred CCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEcc
Q 002097 549 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 628 (967)
Q Consensus 549 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 628 (967)
+++++|+|++|.+++..|..|.++++|++|++++|++.+..+..|.++++|++|+|++|.+++.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------- 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI---------------- 138 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC----------------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc----------------
Confidence 3556666666666555555566666666666666666555555666666666666666655422
Q ss_pred CCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCC-cCcccCChhccCCCCCCEEECCCCcCcc
Q 002097 629 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN-NLEGEVPIQLCRLNQLQLLDLSDNNLHG 707 (967)
Q Consensus 629 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 707 (967)
+...|..+++|++|+|++|+++...+..|..+++|++|++++| .+....+..|..+++|++|++++|++++
T Consensus 139 --------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 139 --------PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp --------CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred --------ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 2224555666666666666666555556666667777777663 3333333456677777777777777664
Q ss_pred cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCc
Q 002097 708 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 787 (967)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 787 (967)
. | .+.. +++|++|+|++|.+++..|
T Consensus 211 ~-~-~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 211 M-P-NLTP-----------------------------------------------------LVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp C-C-CCTT-----------------------------------------------------CTTCCEEECTTSCCSEECG
T ss_pred c-c-cccc-----------------------------------------------------cccccEEECcCCcCcccCc
Confidence 3 1 1221 3367788888888887777
Q ss_pred ccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 788 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 788 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
..|.++++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 7888888888888888888888888888888888888888888877777777888888888888888877653
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=260.59 Aligned_cols=252 Identities=21% Similarity=0.243 Sum_probs=210.8
Q ss_pred ccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcC
Q 002097 527 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 606 (967)
Q Consensus 527 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 606 (967)
.+.++..+..++ .+|..+. ++++.|+|++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456677777776 5565554 5788888888888777777788888888888888888777777788888888888888
Q ss_pred CcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCc-CcccC
Q 002097 607 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN-LEGEV 685 (967)
Q Consensus 607 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 685 (967)
|++++ ++...|..+++|++|+|++|+++...+..|..+++|++|++++|+ +....
T Consensus 122 n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 77763 333378889999999999999998777899999999999999954 55444
Q ss_pred ChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccc
Q 002097 686 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 765 (967)
Q Consensus 686 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (967)
+..|.++++|++|++++|.++... . +..
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~-------------------------------------------------- 205 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLREIP-N-LTP-------------------------------------------------- 205 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSSCC-C-CTT--------------------------------------------------
T ss_pred cchhhcccccCeecCCCCcCcccc-c-cCC--------------------------------------------------
Confidence 557999999999999999987442 1 222
Q ss_pred hhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCC
Q 002097 766 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 845 (967)
Q Consensus 766 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 845 (967)
+++|++|+|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+
T Consensus 206 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 206 ---LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp ---CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred ---CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 34899999999999998899999999999999999999999999999999999999999999988888899999999
Q ss_pred eEecCCCcCccCCCC
Q 002097 846 IFIVAYNNLSGKIPE 860 (967)
Q Consensus 846 ~l~ls~N~l~~~~p~ 860 (967)
.|++++|++.|.+..
T Consensus 283 ~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 283 RIHLHHNPWNCNCDI 297 (440)
T ss_dssp EEECCSSCEECSSTT
T ss_pred EEEcCCCCccCCCCc
Confidence 999999999998764
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.3e-26 Score=261.13 Aligned_cols=252 Identities=23% Similarity=0.282 Sum_probs=218.4
Q ss_pred CcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCC
Q 002097 551 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 630 (967)
Q Consensus 551 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 630 (967)
...++.++..++ .+|..+. +++++|++++|++++..+..|.++++|+.|++++|.+.+..
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----------------- 115 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE----------------- 115 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-----------------
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-----------------
Confidence 456777777776 5666554 68899999999998888888889999999999888886432
Q ss_pred cCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCc-CcccC
Q 002097 631 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN-LHGLI 709 (967)
Q Consensus 631 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 709 (967)
...|.++++|++|+|++|++++..+..|.++++|++|+|++|++.+..+..|..+++|+.|++++|+ +....
T Consensus 116 -------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 116 -------VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred -------hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 2378889999999999999998888889999999999999999998777889999999999999954 44444
Q ss_pred CCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCccc
Q 002097 710 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 789 (967)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 789 (967)
+..|.. +++|++|+|++|++++ +| .
T Consensus 189 ~~~~~~-----------------------------------------------------l~~L~~L~L~~n~l~~-~~-~ 213 (452)
T 3zyi_A 189 EGAFEG-----------------------------------------------------LFNLKYLNLGMCNIKD-MP-N 213 (452)
T ss_dssp TTTTTT-----------------------------------------------------CTTCCEEECTTSCCSS-CC-C
T ss_pred hhhccC-----------------------------------------------------CCCCCEEECCCCcccc-cc-c
Confidence 445554 3489999999999995 44 5
Q ss_pred ccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCcccccccC
Q 002097 790 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 869 (967)
Q Consensus 790 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~ 869 (967)
+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..+..+..+..+.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999987777677788889
Q ss_pred cccccCCcCCCCCCC
Q 002097 870 KSSYDGNPFLCGLPL 884 (967)
Q Consensus 870 ~~~~~~n~~lc~~~l 884 (967)
...+.+||+.|+|.+
T Consensus 294 ~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 294 ELHLHHNPWNCDCDI 308 (452)
T ss_dssp EEECCSSCEECSTTT
T ss_pred EEEccCCCcCCCCCc
Confidence 999999999999975
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=260.53 Aligned_cols=251 Identities=27% Similarity=0.272 Sum_probs=217.5
Q ss_pred CCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECC
Q 002097 502 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 581 (967)
Q Consensus 502 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 581 (967)
..+.++..+..++ .+|..+. ++++.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678888888887 4555543 689999999999998888899999999999999999998888899999999999999
Q ss_pred CCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCcc-CCCC
Q 002097 582 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY-LNGS 660 (967)
Q Consensus 582 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 660 (967)
+|++++..+..|..+++|++|++++|.+.+ ++...|..+++|++|++++|+ +...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCccee
Confidence 999998777889999999999999998863 333378889999999999954 4444
Q ss_pred cchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCC
Q 002097 661 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 740 (967)
Q Consensus 661 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (967)
.+..|.++++|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..|..++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------- 231 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM----------------------- 231 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----------------------
T ss_pred CcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-----------------------
Confidence 4467899999999999999998 455 488899999999999999998888887644
Q ss_pred CCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCC
Q 002097 741 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 820 (967)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 820 (967)
+|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|
T Consensus 232 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 232 ------------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp ------------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ------------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 89999999999998889999999999999999999999888899999999
Q ss_pred CEEECcCCcCcccC
Q 002097 821 ESLDLSYNKLSGKI 834 (967)
Q Consensus 821 ~~L~Ls~N~l~~~~ 834 (967)
+.|+|++|++...-
T Consensus 282 ~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 282 ERIHLHHNPWNCNC 295 (440)
T ss_dssp CEEECCSSCEECSS
T ss_pred CEEEcCCCCccCCC
Confidence 99999999987543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9e-27 Score=248.42 Aligned_cols=89 Identities=22% Similarity=0.212 Sum_probs=42.2
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
+|++|++++|++++..+..|..+++|+.|++++|.+++..|..|+.+++|+.|++++|++++..|..+..+++|++++++
T Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 34444444444443333334444445555555555554444445555555555555555554433444445555555555
Q ss_pred CCcCccCCC
Q 002097 851 YNNLSGKIP 859 (967)
Q Consensus 851 ~N~l~~~~p 859 (967)
+|+++|.++
T Consensus 234 ~N~~~c~~~ 242 (285)
T 1ozn_A 234 DNPWVCDCR 242 (285)
T ss_dssp SSCEECSGG
T ss_pred CCCccCCCC
Confidence 555554443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-26 Score=246.89 Aligned_cols=253 Identities=23% Similarity=0.230 Sum_probs=204.7
Q ss_pred cceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCC
Q 002097 528 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 607 (967)
Q Consensus 528 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 607 (967)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45667777666 345433 357777777777777666667777777777777777777666777777777777777777
Q ss_pred c-CCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCC
Q 002097 608 N-ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 686 (967)
Q Consensus 608 ~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 686 (967)
. +. .++...+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+
T Consensus 91 ~~l~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLR------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCC------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcc------------------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 6 43 2323378889999999999999998888999999999999999999998777
Q ss_pred hhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccch
Q 002097 687 IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 766 (967)
Q Consensus 687 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (967)
..+..+++|++|++++|++++..+..|..++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------------------------- 177 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLH------------------------------------------------- 177 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------------------------
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCcc-------------------------------------------------
Confidence 7899999999999999999987777676543
Q ss_pred hhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCe
Q 002097 767 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 846 (967)
Q Consensus 767 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 846 (967)
+|++|++++|.+++..|..|..+++|+.|++++|.+++..+..++.+++|+.|++++|++.+..+.. .-...++.
T Consensus 178 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~ 252 (285)
T 1ozn_A 178 ----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK 252 (285)
T ss_dssp ----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred ----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence 8999999999999988999999999999999999999988888999999999999999998765532 12234555
Q ss_pred EecCCCcCccCCCCC
Q 002097 847 FIVAYNNLSGKIPEW 861 (967)
Q Consensus 847 l~ls~N~l~~~~p~~ 861 (967)
+..+.+.+.|..|..
T Consensus 253 ~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 253 FRGSSSEVPCSLPQR 267 (285)
T ss_dssp CCSEECCCBEEESGG
T ss_pred cccccCccccCCchH
Confidence 667788888888864
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.6e-29 Score=297.45 Aligned_cols=378 Identities=12% Similarity=0.061 Sum_probs=203.7
Q ss_pred hcCCCCcEEEccCCcccCcCCCCcCC-CC-CccEEEecCCc-CCcCCChhhhhcCCCCcEEECcCCCCCCC----Ccccc
Q 002097 400 ENNTKLEFLYLVNDSLAGPFRLPIHS-HK-RLRFLDVSNNN-FQGHIPVEIGDILPSLVYFNISMNALDGS----IPSSF 472 (967)
Q Consensus 400 ~~~~~L~~L~L~~n~l~~~~~~~~~~-~~-~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~ 472 (967)
..+++|++|++++|.+.+.....+.. ++ +|++|++++|. +.......+...+++|++|++++|.+++. ++..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 35666777777666555433332222 23 37777777665 11111112223467777777777776554 33344
Q ss_pred cCCCCCCEEEccCCcCCC----ccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCcccc---ccCCccC
Q 002097 473 GNVIFLQFLDLSNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV---GEIPQSL 545 (967)
Q Consensus 473 ~~l~~L~~L~L~~n~l~~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~ 545 (967)
..+++|++|++++|.+++ .++. ++..+++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 566777777777777652 1222 23346777777777777764 4566677777777777653322 2233456
Q ss_pred cCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCC-ccccCCCCCCEEeCcCCcCCc-CCCCCcC-CCcc
Q 002097 546 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNNISG-SLPSCFY-PLSI 622 (967)
Q Consensus 546 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-~~~L 622 (967)
..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|+.|+++ +.+.+ .++.... +++|
T Consensus 267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 6677777777776543 3566666677777777777777543332 335667777777777 33321 1221111 4556
Q ss_pred cEEEccC-----------CcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhC-CCCCCEEEcC----CCcCccc--
Q 002097 623 KQVHLSK-----------NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG-LSQLSHLNLA----HNNLEGE-- 684 (967)
Q Consensus 623 ~~L~l~~-----------n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-- 684 (967)
++|++++ +.+++.........+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 6666652 23322211112334566666666666665554444443 6666666664 4455432
Q ss_pred ---CChhccCCCCCCEEECCCCc--CcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccc
Q 002097 685 ---VPIQLCRLNQLQLLDLSDNN--LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 759 (967)
Q Consensus 685 ---~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (967)
++..+..+++|++|++++|. +++..+..+.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--------------------------------------------- 459 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--------------------------------------------- 459 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH---------------------------------------------
Confidence 22234456666666665432 2221111110
Q ss_pred cccccchhhhcccceEECCCCcccCC-CcccccCCCCCCEEECcCcccccc-CcccccCCCCCCEEECcCCcCccc
Q 002097 760 IAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGK 833 (967)
Q Consensus 760 ~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ 833 (967)
..+++|++|++++|.+++. ++..+..+++|+.|+|++|.+++. ++..+..+++|++|+|++|+++..
T Consensus 460 -------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 460 -------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp -------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred -------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 1133566666666666542 233345566666666666665543 233334556666666666666544
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1e-28 Score=293.42 Aligned_cols=412 Identities=12% Similarity=0.033 Sum_probs=293.0
Q ss_pred CchHHhhcCCCCcEEEccCCccc---CcCCCCcC------------CCCCccEEEecCCcCCcCCChhhhhcCCC-CcEE
Q 002097 394 FPNWLLENNTKLEFLYLVNDSLA---GPFRLPIH------------SHKRLRFLDVSNNNFQGHIPVEIGDILPS-LVYF 457 (967)
Q Consensus 394 ~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L 457 (967)
.|..++..+++|++|+++++... +..+..+. .+++|++|++++|.+++..+..+...++. |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 34455566777777777664321 12222222 67899999999998876655555554455 9999
Q ss_pred ECcCCCC-CC-CCcccccCCCCCCEEEccCCcCCCccch---hHhhcCCCCcEEEccccccc----ccccccccCCcccc
Q 002097 458 NISMNAL-DG-SIPSSFGNVIFLQFLDLSNNKLTGEIPD---HLAMCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLR 528 (967)
Q Consensus 458 ~l~~n~l-~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~ 528 (967)
++++|.- +. .++.....+++|++|++++|.+++.-.. .+...+++|++|++++|.++ +.++..+..+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 9999872 21 1222334789999999999988754221 23445899999999999987 33455567889999
Q ss_pred ceeccCccccccCCccCcCCCCCcEEECcCCcCC---CCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCc
Q 002097 529 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS---GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 605 (967)
Q Consensus 529 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 605 (967)
+|++++|.+.+ +|..+.++++|++|+++.+... +..+..+..+++|+.|+++++.. +.+|..+..+++|++|+++
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecC
Confidence 99999999885 5677888999999999864332 23445677889999999988643 3567778889999999999
Q ss_pred CCcCCcCCCC--CcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcC-----------ccCCCCc-chhhhCCCCC
Q 002097 606 DNNISGSLPS--CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-----------NYLNGSI-PDWIDGLSQL 671 (967)
Q Consensus 606 ~n~l~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~-~~~~~~l~~L 671 (967)
+|.+++.... ...+++|+.|+++++...+.++. .+..+++|++|++++ +.+++.. +....++++|
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 9997643332 12378999999984332222322 456788999999993 5665432 2334568999
Q ss_pred CEEEcCCCcCcccCChhccC-CCCCCEEECC----CCcCcccCCC-cccccccccccCCCCCCCCCcccccccCCCCCch
Q 002097 672 SHLNLAHNNLEGEVPIQLCR-LNQLQLLDLS----DNNLHGLIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 745 (967)
Q Consensus 672 ~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (967)
++|+++.|++++..+..+.. +++|+.|+++ .|.+++.+.+ .+..
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~------------------------------ 430 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS------------------------------ 430 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH------------------------------
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH------------------------------
Confidence 99999999998777777765 8999999996 4555543111 0000
Q ss_pred hhhhheeeeeeccccccccchhhhcccceEECCCCc--ccCCCccccc-CCCCCCEEECcCccccc-cCcccccCCCCCC
Q 002097 746 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK--LVGHIPPQIG-NLTRIQTLNLSHNNLTG-TIPLTFSNLRHIE 821 (967)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 821 (967)
....+++|++|+++.|. +++..+..+. .+++|+.|+|++|++++ .++..+..+++|+
T Consensus 431 -------------------~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 431 -------------------LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp -------------------HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred -------------------HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 01225589999998654 6655555554 48999999999999987 4456668899999
Q ss_pred EEECcCCcCccc-CCccccCCCcCCeEecCCCcCccC
Q 002097 822 SLDLSYNKLSGK-IPRQLVDLNTLAIFIVAYNNLSGK 857 (967)
Q Consensus 822 ~L~Ls~N~l~~~-~p~~l~~l~~L~~l~ls~N~l~~~ 857 (967)
+|++++|++++. ++.....+++|++|++++|+++..
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999999998765 444556799999999999998864
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.3e-26 Score=249.50 Aligned_cols=234 Identities=22% Similarity=0.319 Sum_probs=150.8
Q ss_pred CccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEe
Q 002097 524 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 603 (967)
Q Consensus 524 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 603 (967)
.++++.|++++|.+. .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|++. .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888887 66777778888888888888887 77888888888888888888887 6677788888888888
Q ss_pred CcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcc
Q 002097 604 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 683 (967)
Q Consensus 604 L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 683 (967)
+++|++.+.+|..+.. . .+. +.+.++++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~~-----~---------~~~-~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS-----T---------DAS-GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE-----E---------C-C-CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh-----c---------cch-hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 8887777666653321 0 001 13445566666666666665 555556666666666666666653
Q ss_pred cCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccc
Q 002097 684 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 763 (967)
Q Consensus 684 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (967)
+|..+..+++|++|++++|++.
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~--------------------------------------------------------- 242 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTAL--------------------------------------------------------- 242 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTC---------------------------------------------------------
T ss_pred -CchhhccCCCCCEEECcCCcch---------------------------------------------------------
Confidence 4444555555555555555544
Q ss_pred cchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCc
Q 002097 764 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 843 (967)
Q Consensus 764 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 843 (967)
+.+|..|+.+++|+.|+|++|.+.+.+|..++.+++|+.|||++|++.+.+|..+..+++
T Consensus 243 --------------------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 243 --------------------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp --------------------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred --------------------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 445555555555555555555555555555555555666666665555556655556655
Q ss_pred CCeEecCCCcC
Q 002097 844 LAIFIVAYNNL 854 (967)
Q Consensus 844 L~~l~ls~N~l 854 (967)
|+.+++..|.+
T Consensus 303 L~~l~l~~~~~ 313 (328)
T 4fcg_A 303 NCIILVPPHLQ 313 (328)
T ss_dssp TCEEECCGGGS
T ss_pred ceEEeCCHHHH
Confidence 65555554443
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.1e-26 Score=248.46 Aligned_cols=226 Identities=20% Similarity=0.236 Sum_probs=185.2
Q ss_pred CCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEE
Q 002097 500 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 579 (967)
Q Consensus 500 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 579 (967)
...++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 578999999999998 67888888999999999999999 88999999999999999999999 7899999999999999
Q ss_pred CCCCccccCCCccccC---------CCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEE
Q 002097 580 MPKNHLEGPIPVEFCR---------LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 650 (967)
Q Consensus 580 l~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 650 (967)
+++|++.+.+|..+.. +++|++|++++|.++ .+|. .+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~-~l~~l~~L~~L 211 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPA-SIANLQNLKSL 211 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCG-GGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchH-hhcCCCCCCEE
Confidence 9999888888877654 666666666666554 4454 68889999999
Q ss_pred ECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCC
Q 002097 651 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 730 (967)
Q Consensus 651 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (967)
+|++|++++ +|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..++
T Consensus 212 ~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~------------- 277 (328)
T 4fcg_A 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT------------- 277 (328)
T ss_dssp EEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-------------
T ss_pred EccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-------------
Confidence 999999995 566799999999999999999999999999999999888888877766665554422
Q ss_pred CcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCcccc
Q 002097 731 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 807 (967)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 807 (967)
+|++|+|++|.+.+.+|..++++++|+.+++..+.+.
T Consensus 278 ----------------------------------------~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 278 ----------------------------------------QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ----------------------------------------TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ----------------------------------------CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 5666666666666666666666666666666555443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-27 Score=257.91 Aligned_cols=246 Identities=21% Similarity=0.206 Sum_probs=166.0
Q ss_pred CCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEc
Q 002097 548 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 627 (967)
Q Consensus 548 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l 627 (967)
+++|++|++++|.+++..|..+..+++|++|++++|++++..+ +..+++|++|++++|.+++.. ..++|+.|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence 3344444444444444333444444444444444444443222 444444444444444443221 1134444555
Q ss_pred cCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhcc-CCCCCCEEECCCCcCc
Q 002097 628 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLH 706 (967)
Q Consensus 628 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~ 706 (967)
++|.+.+..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.++
T Consensus 107 ~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 5544443322 2357789999999999887777888889999999999999877776664 6889999999999887
Q ss_pred ccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCC
Q 002097 707 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 786 (967)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 786 (967)
+..+..+ +++|++|+|++|.+++ +
T Consensus 183 ~~~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~-l 206 (317)
T 3o53_A 183 DVKGQVV-------------------------------------------------------FAKLKTLDLSSNKLAF-M 206 (317)
T ss_dssp EEECCCC-------------------------------------------------------CTTCCEEECCSSCCCE-E
T ss_pred ccccccc-------------------------------------------------------cccCCEEECCCCcCCc-c
Confidence 6532211 3378899999999985 4
Q ss_pred cccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCc-ccCCccccCCCcCCeEecCCC-cCccCCCC
Q 002097 787 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS-GKIPRQLVDLNTLAIFIVAYN-NLSGKIPE 860 (967)
Q Consensus 787 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~ls~N-~l~~~~p~ 860 (967)
|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++| .++|..|.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 555888999999999999998 46778888999999999999998 777888888888888888854 56766554
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-27 Score=257.49 Aligned_cols=81 Identities=31% Similarity=0.439 Sum_probs=52.1
Q ss_pred ccceEECCCCcccCCCc-ccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEec
Q 002097 771 LLAGLDLSCNKLVGHIP-PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 849 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 849 (967)
+|++|++++|.+++.+| ..+..+++|+.|+|++|.++ .+|..+. ++|++|||++|++++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 56666666666665553 34555666777777777776 4555554 6677777777777654 54 666777777777
Q ss_pred CCCcCcc
Q 002097 850 AYNNLSG 856 (967)
Q Consensus 850 s~N~l~~ 856 (967)
++|++++
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 7777664
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.6e-27 Score=253.71 Aligned_cols=134 Identities=25% Similarity=0.302 Sum_probs=85.1
Q ss_pred cccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEccccccc-cccccccc-------CCccccceeccCccccccCC
Q 002097 471 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK-GHIFSRIF-------SLRNLRWLLLEGNHFVGEIP 542 (967)
Q Consensus 471 ~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~ 542 (967)
.++..++|++|++++|.+ .+|..+... |+.|++++|.+. ..++..+. ++++|++|++++|.+++..|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 455667788888888888 677766542 777777777773 33444433 56677777777777766666
Q ss_pred ccC--cCCCCCcEEECcCCcCCCCCCccccCC-----CCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCC
Q 002097 543 QSL--SKCSSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 610 (967)
Q Consensus 543 ~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 610 (967)
..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++.+..+..|+++++|++|++++|++.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 654 6666777777777776654 5555544 56666666666665555555555555555555555543
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-26 Score=264.49 Aligned_cols=235 Identities=21% Similarity=0.185 Sum_probs=133.9
Q ss_pred CCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEcc
Q 002097 549 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 628 (967)
Q Consensus 549 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 628 (967)
++|++|+|++|.+++..|..|+.+++|++|++++|.+++..| +..+++|+.|++++|.+++..+ .++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 356666666666665555566666666666666666654443 5566666666666666553211 1344444444
Q ss_pred CCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhcc-CCCCCCEEECCCCcCcc
Q 002097 629 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHG 707 (967)
Q Consensus 629 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~ 707 (967)
+|.+.+..+ ..+++|+.|+|++|.+++..|..++.+++|++|+|++|.+++..|..+. .+++|++|+|++|.+++
T Consensus 108 ~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 444433222 2245666777777777666666666666677777777766666665554 56666666666666655
Q ss_pred cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCc
Q 002097 708 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 787 (967)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 787 (967)
..+..+ +++|+.|+|++|.+++..
T Consensus 184 ~~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~~~- 207 (487)
T 3oja_A 184 VKGQVV-------------------------------------------------------FAKLKTLDLSSNKLAFMG- 207 (487)
T ss_dssp EECCCC-------------------------------------------------------CTTCCEEECCSSCCCEEC-
T ss_pred cccccc-------------------------------------------------------CCCCCEEECCCCCCCCCC-
Confidence 422111 225666666666666433
Q ss_pred ccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCc-ccCCccccCCCcCCeEecC
Q 002097 788 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS-GKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 788 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~ls 850 (967)
..+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 335666666666666666664 4455566666666666666665 4445555555555544443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-27 Score=255.56 Aligned_cols=268 Identities=22% Similarity=0.215 Sum_probs=198.5
Q ss_pred CCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECc
Q 002097 478 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 557 (967)
Q Consensus 478 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 557 (967)
++..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 455666777665 5555666666778888888888877767777777777777777777765543 6677777777777
Q ss_pred CCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCC
Q 002097 558 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 637 (967)
Q Consensus 558 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 637 (967)
+|++++. ...++|++|++++|++++..+.. +++|+.|++++|++++ ..+
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~-----------------------~~~ 137 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITM-----------------------LRD 137 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCS-----------------------GGG
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCC-----------------------ccc
Confidence 7776532 12366777777777666443322 4556666666665543 222
Q ss_pred cccccCCCCCcEEECcCccCCCCcchhh-hCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccccc
Q 002097 638 EGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 716 (967)
Q Consensus 638 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 716 (967)
..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++. + ....+++|++|++++|++++.++. +..
T Consensus 138 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~- 212 (317)
T 3o53_A 138 -LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQS- 212 (317)
T ss_dssp -BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGG-
T ss_pred -hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcc-
Confidence 267778899999999999998777666 4789999999999999865 3 234589999999999999876554 443
Q ss_pred ccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCC
Q 002097 717 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 796 (967)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 796 (967)
+++|+.|++++|.++ .+|..+..+++|
T Consensus 213 ----------------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 213 ----------------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp ----------------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred ----------------------------------------------------cCcccEEECcCCccc-chhhHhhcCCCC
Confidence 348999999999999 578889999999
Q ss_pred CEEECcCcccc-ccCcccccCCCCCCEEECc-CCcCcccCCcc
Q 002097 797 QTLNLSHNNLT-GTIPLTFSNLRHIESLDLS-YNKLSGKIPRQ 837 (967)
Q Consensus 797 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~ 837 (967)
+.|++++|.++ +.+|..++.+++|+.|+++ .+.+.|..|..
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 99999999999 8888999999999999999 44566655543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.8e-26 Score=261.58 Aligned_cols=234 Identities=24% Similarity=0.221 Sum_probs=167.0
Q ss_pred CCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECC
Q 002097 502 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 581 (967)
Q Consensus 502 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 581 (967)
+|++|++++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 56666666666665555555555566666666655554433 555555555555555554221 11455555555
Q ss_pred CCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCc
Q 002097 582 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 661 (967)
Q Consensus 582 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 661 (967)
+|.+++..+. .+ ++|+.|++++|.+.+..+. .+..+++|+.|+|++|.+++..
T Consensus 108 ~N~l~~~~~~---~l-----------------------~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 108 NNNISRVSCS---RG-----------------------QGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SSCCCCEEEC---CC-----------------------SSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCCCCCcc---cc-----------------------CCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcC
Confidence 5555433322 12 3455555555555444444 7788999999999999999988
Q ss_pred chhhh-CCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCC
Q 002097 662 PDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 740 (967)
Q Consensus 662 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (967)
|..+. .+++|++|+|++|.+++..+ ...+++|++|+|++|.+++.+|. +..
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~------------------------- 212 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQS------------------------- 212 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGG-------------------------
T ss_pred hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcC-------------------------
Confidence 88876 79999999999999997633 44699999999999999987664 443
Q ss_pred CCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCcccc-ccCcccccCCCC
Q 002097 741 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRH 819 (967)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~ 819 (967)
+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ +.+|..+..++.
T Consensus 213 ----------------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 213 ----------------------------AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp ----------------------------GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred ----------------------------CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 3489999999999995 7888999999999999999998 778888998888
Q ss_pred CCEEECc
Q 002097 820 IESLDLS 826 (967)
Q Consensus 820 L~~L~Ls 826 (967)
|+.++++
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 8888876
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.1e-24 Score=251.47 Aligned_cols=268 Identities=26% Similarity=0.306 Sum_probs=138.4
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceec
Q 002097 453 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 532 (967)
Q Consensus 453 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 532 (967)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 3555555555555 3343332 45555555555555 4444 24555555555555542 222 3445555555
Q ss_pred cCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcC
Q 002097 533 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 612 (967)
Q Consensus 533 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 612 (967)
++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++. |. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-
Confidence 5555543 222 33455555555555542 3322 24555555555554432 21 12344444444444432
Q ss_pred CCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCC
Q 002097 613 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 692 (967)
Q Consensus 613 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 692 (967)
+| ..+++|+.|++++|++++ +|. .+++|+.|++++|.++ .+|. .+
T Consensus 176 -----------------------l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~ 220 (622)
T 3g06_A 176 -----------------------LP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LP 220 (622)
T ss_dssp -----------------------CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CC
T ss_pred -----------------------Cc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CC
Confidence 22 223556666666666553 222 2355666666666665 2332 23
Q ss_pred CCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhccc
Q 002097 693 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 772 (967)
Q Consensus 693 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 772 (967)
++|+.|++++|.+++.. . . +++|
T Consensus 221 ~~L~~L~Ls~N~L~~lp-~---~-----------------------------------------------------l~~L 243 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP-V---L-----------------------------------------------------PSEL 243 (622)
T ss_dssp TTCCEEECCSSCCSCCC-C---C-----------------------------------------------------CTTC
T ss_pred CCCCEEEccCCccCcCC-C---C-----------------------------------------------------CCcC
Confidence 56666666666665422 1 0 1256
Q ss_pred ceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCC
Q 002097 773 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 842 (967)
Q Consensus 773 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 842 (967)
+.|+|++|.++ .+|. .+++|+.|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..++
T Consensus 244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 66666666666 3444 4566667777777766 4566666677777777777777666666555443
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.6e-24 Score=250.68 Aligned_cols=268 Identities=27% Similarity=0.321 Sum_probs=196.0
Q ss_pred CCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEE
Q 002097 476 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 555 (967)
Q Consensus 476 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 555 (967)
.+++.|++++|.++ .+|..++ ++|++|++++|.++. +|. .+++|++|++++|++++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35778888888877 7776553 677777777777763 333 45667777777777663 443 456677777
Q ss_pred CcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCccc
Q 002097 556 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 635 (967)
Q Consensus 556 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 635 (967)
+++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~------------------------ 155 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS------------------------ 155 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC------------------------
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC------------------------
Confidence 77776663 333 34566666666666654 2322 3555666666555542
Q ss_pred CCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccc
Q 002097 636 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 715 (967)
Q Consensus 636 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 715 (967)
+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|++++ +|. .+++|+.|++++|.++...+ .
T Consensus 156 l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~-~--- 219 (622)
T 3g06_A 156 LPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA-L--- 219 (622)
T ss_dssp CCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC-C---
T ss_pred cCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC-C---
Confidence 222 24689999999999985 55 557899999999999985 443 35899999999999874321 1
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCC
Q 002097 716 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 795 (967)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 795 (967)
+++|+.|++++|.+++ +| ..+++
T Consensus 220 -----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 220 -----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp -----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred -----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCc
Confidence 2379999999999995 66 45689
Q ss_pred CCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCcccc
Q 002097 796 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF 865 (967)
Q Consensus 796 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 865 (967)
|+.|+|++|.+++ +|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 243 L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 243 LKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 9999999999995 555 6789999999999999 889999999999999999999999888654433
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.4e-24 Score=224.61 Aligned_cols=209 Identities=25% Similarity=0.295 Sum_probs=122.7
Q ss_pred CCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECc
Q 002097 574 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 653 (967)
Q Consensus 574 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 653 (967)
+|++|++++|++++..+..|.++++|++|++++|.+.+..+ ..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED------------------------GAYQSLSHLSTLILT 84 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT------------------------TTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH------------------------HHccCCcCCCEEECC
Confidence 44555555555544444445555555555555554432211 134444555555555
Q ss_pred CccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCccc-CCCcccccccccccCCCCCCCCCc
Q 002097 654 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPF 732 (967)
Q Consensus 654 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 732 (967)
+|.+++..+..|.++++|++|++++|++.+..+..+..+++|++|++++|.+++. +|..+..+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l---------------- 148 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---------------- 148 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------
Confidence 5555544444555555555555555555544444455555555555555555442 24444332
Q ss_pred ccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCC----EEECcCccccc
Q 002097 733 KTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ----TLNLSHNNLTG 808 (967)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~ 808 (967)
++|++|++++|++++..+..+..+++|+ .|++++|.+++
T Consensus 149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 2555666666666555555555555555 78888888887
Q ss_pred cCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 809 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 809 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
..+..+.. .+|+.|++++|++++..+..+..+++|+.+++++|+++|.+|.
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 66666554 3788888888888866666678888888888888888888875
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.3e-27 Score=282.08 Aligned_cols=207 Identities=18% Similarity=0.143 Sum_probs=119.7
Q ss_pred hhcCCCCcEEEccCCcccCcCCCCcC-CCCCccEEEecCC-cCCcCCChhhhhcCCCCcEEECcCCCCCCCCccccc---
Q 002097 399 LENNTKLEFLYLVNDSLAGPFRLPIH-SHKRLRFLDVSNN-NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--- 473 (967)
Q Consensus 399 ~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--- 473 (967)
...+++|++|++++|.+++.....+. .+++|++|++++| .+.+.....+...+++|++|++++|.+++..+..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34667777777777766554433332 4677777777777 343222223333467888888888776654444333
Q ss_pred -CCCCCCEEEccCCc--CCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCc-------cccccCCc
Q 002097 474 -NVIFLQFLDLSNNK--LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN-------HFVGEIPQ 543 (967)
Q Consensus 474 -~l~~L~~L~L~~n~--l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~ 543 (967)
.+++|++|++++|. +.......+...+++|++|++++|.-.+.++..+..+++|++|+++.+ .+.+ ++.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence 55678888888776 221111222334678888888877332235666667777777775443 3332 233
Q ss_pred cCcCCCCCcEE-ECcCCcCCCCCCccccCCCCCCEEECCCCccccCCC-ccccCCCCCCEEeCcCC
Q 002097 544 SLSKCSSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDN 607 (967)
Q Consensus 544 ~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n 607 (967)
.+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|+.|++++|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 56677777777 3333222 2344444456777777777776543222 22446677777777766
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=3.2e-26 Score=272.21 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=68.7
Q ss_pred hcCCCCcEEECcCCCCCCCCcccccC-CCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccc-cccCCcc
Q 002097 449 DILPSLVYFNISMNALDGSIPSSFGN-VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFS-RIFSLRN 526 (967)
Q Consensus 449 ~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 526 (967)
..+++|++|++++ .+++..+..+.. +++|++|++++|.+++.....+...+++|++|++++|.+++.... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3467777777766 555444444444 677888888888776544444445577888888888877544333 3345778
Q ss_pred ccceeccCccccccCCccC-cCCCCCcEEECcCCc
Q 002097 527 LRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNN 560 (967)
Q Consensus 527 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~ 560 (967)
|++|++++|+++......+ ..++.|+...+..+.
T Consensus 508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 8888888887743322223 345666666555543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.7e-23 Score=220.28 Aligned_cols=212 Identities=25% Similarity=0.222 Sum_probs=156.1
Q ss_pred CCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEcc
Q 002097 549 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 628 (967)
Q Consensus 549 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 628 (967)
++|++|++++|.+++..+..+.++++|++|++++|++.+..+..|.++++|++|++++|.+.+..+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------- 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG------------- 94 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-------------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-------------
Confidence 3677777777777766666777777777777777777766666777777777777777776633222
Q ss_pred CCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCccc-CChhccCCCCCCEEECCCCcCcc
Q 002097 629 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE-VPIQLCRLNQLQLLDLSDNNLHG 707 (967)
Q Consensus 629 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 707 (967)
.|.++++|++|++++|.+.+..+..++.+++|++|++++|++.+. +|..+..+++|++|++++|++++
T Consensus 95 -----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 95 -----------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp -----------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred -----------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 566667777777777777766555677778888888888887753 47778888888888888888877
Q ss_pred cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccc-eEECCCCcccCCC
Q 002097 708 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA-GLDLSCNKLVGHI 786 (967)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~ 786 (967)
..+..+..+. .++.+. +|++++|.+++..
T Consensus 164 ~~~~~~~~l~--------------------------------------------------~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 164 IYCTDLRVLH--------------------------------------------------QMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ECGGGGHHHH--------------------------------------------------TCTTCCEEEECCSSCCCEEC
T ss_pred CCHHHhhhhh--------------------------------------------------hccccceeeecCCCcccccC
Confidence 7665554422 011222 7889999998655
Q ss_pred cccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCC
Q 002097 787 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 835 (967)
Q Consensus 787 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 835 (967)
+..+. ..+|+.|+|++|.+++..+..|+.+++|+.|++++|++.+..|
T Consensus 194 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 194 PGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 55554 4589999999999998888888999999999999999987655
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.5e-22 Score=213.37 Aligned_cols=186 Identities=25% Similarity=0.267 Sum_probs=157.5
Q ss_pred cccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEC
Q 002097 621 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 700 (967)
Q Consensus 621 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 700 (967)
++++|++++|.+.+ ++...|..+++|++|++++|.++...+..|.++++|++|++++|++.+..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 44444444444432 33337888899999999999998776677888999999999999999777778889999999999
Q ss_pred CCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCC
Q 002097 701 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 780 (967)
Q Consensus 701 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 780 (967)
++|.+++..+..|..++ +|++|+|++|
T Consensus 117 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n 143 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLT-----------------------------------------------------KLTYLSLGYN 143 (270)
T ss_dssp CSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCccCeeCHHHhCcCc-----------------------------------------------------CCCEEECCCC
Confidence 99999888877776543 8999999999
Q ss_pred cccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 781 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 781 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 99977777799999999999999999988888899999999999999999977777788999999999999999998864
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.2e-22 Score=210.98 Aligned_cols=206 Identities=26% Similarity=0.321 Sum_probs=153.9
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccC
Q 002097 550 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 629 (967)
Q Consensus 550 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 629 (967)
..++++++++.++ .+|..+. +++++|++++|++.+..+..|.++++|++|++++|.+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------ 75 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT------------------ 75 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC------------------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe------------------
Confidence 3556666666665 3454443 466667777776666555666677777777777766652
Q ss_pred CcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccC
Q 002097 630 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 709 (967)
Q Consensus 630 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 709 (967)
++...|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..
T Consensus 76 ------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 76 ------LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp ------CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ------eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 23335566777777777777777666667777888888888888888777777788888888888888887766
Q ss_pred CCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCccc
Q 002097 710 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 789 (967)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 789 (967)
+..|..+ ++|++|++++|.+++..+..
T Consensus 150 ~~~~~~l-----------------------------------------------------~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 150 KGVFDKL-----------------------------------------------------TSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp TTTTTTC-----------------------------------------------------TTCCEEECCSSCCSCCCTTT
T ss_pred HhHccCC-----------------------------------------------------cccceeEecCCcCcEeChhH
Confidence 6656553 37888888888888777777
Q ss_pred ccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCC
Q 002097 790 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 835 (967)
Q Consensus 790 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 835 (967)
|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++.+..+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 8999999999999999998888889999999999999999886543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.8e-22 Score=212.93 Aligned_cols=180 Identities=27% Similarity=0.300 Sum_probs=148.5
Q ss_pred cccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEC
Q 002097 621 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 700 (967)
Q Consensus 621 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 700 (967)
+++.|++++|.+.+..+. .|..+++|++|+|++|.+++..+. +.+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 32 ~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 444444444444433333 788889999999999998865332 67899999999999998 67778888999999999
Q ss_pred CCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCC
Q 002097 701 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 780 (967)
Q Consensus 701 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 780 (967)
++|++++..+..|..++ +|++|+|++|
T Consensus 108 ~~N~l~~l~~~~~~~l~-----------------------------------------------------~L~~L~L~~N 134 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLG-----------------------------------------------------ELQELYLKGN 134 (290)
T ss_dssp CSSCCCCCCSSTTTTCT-----------------------------------------------------TCCEEECTTS
T ss_pred CCCcCcccCHHHHcCCC-----------------------------------------------------CCCEEECCCC
Confidence 99999988877776644 8999999999
Q ss_pred cccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCC
Q 002097 781 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 858 (967)
Q Consensus 781 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 858 (967)
++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+.....|+.+++++|++.|.+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 999777777889999999999999999877778899999999999999998 78888888889999999999998866
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.2e-22 Score=214.47 Aligned_cols=208 Identities=23% Similarity=0.282 Sum_probs=174.0
Q ss_pred ccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCc
Q 002097 569 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 648 (967)
Q Consensus 569 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 648 (967)
...+++|+.|++++|.+.. ...+..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~------------------------~~--~l~~l~~L~ 88 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD------------------------IS--ALKELTNLT 88 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC------------------------CG--GGTTCTTCC
T ss_pred cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC------------------------ch--hhcCCCCCC
Confidence 4566788888888887763 2346677788888888777653 11 567888999
Q ss_pred EEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCC
Q 002097 649 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP 728 (967)
Q Consensus 649 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~ 728 (967)
+|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..++
T Consensus 89 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------- 157 (272)
T 3rfs_A 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT----------- 157 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------
T ss_pred EEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------
Confidence 999999999988888889999999999999999987777789999999999999999887777666533
Q ss_pred CCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccc
Q 002097 729 DKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 808 (967)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 808 (967)
+|++|++++|++++..+..|+.+++|+.|++++|.+++
T Consensus 158 ------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 158 ------------------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp ------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ------------------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 89999999999998777778999999999999999999
Q ss_pred cCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCccc
Q 002097 809 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 864 (967)
Q Consensus 809 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 864 (967)
..|..|+.+++|+.|++++|++.+..| .|++++++.|.++|.+|.+.+.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccc
Confidence 888889999999999999999986554 5888999999999999986543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.3e-23 Score=216.50 Aligned_cols=228 Identities=25% Similarity=0.251 Sum_probs=173.8
Q ss_pred ccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeC
Q 002097 525 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 604 (967)
Q Consensus 525 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 604 (967)
.++..+++.++.+.... ....+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 44555666666555432 24566778888888887763 2 3477788888888888887753 46778888888888
Q ss_pred cCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCccc
Q 002097 605 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 684 (967)
Q Consensus 605 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 684 (967)
++|.+++..+ ..|..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 93 ~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 93 TGNQLQSLPN------------------------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148 (272)
T ss_dssp TTSCCCCCCT------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccCh------------------------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc
Confidence 8887764322 2566777888888888888877777788888888888888888877
Q ss_pred CChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeecccccccc
Q 002097 685 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 764 (967)
Q Consensus 685 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (967)
.+..+..+++|++|++++|++++..+..|..++
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------------- 181 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT----------------------------------------------- 181 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------------------------------------
T ss_pred CHHHhccCccCCEEECCCCCcCccCHHHhcCCc-----------------------------------------------
Confidence 777778888888888888888877776665533
Q ss_pred chhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCC
Q 002097 765 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 842 (967)
Q Consensus 765 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 842 (967)
+|+.|++++|.+++..|..+..+++|+.|++++|.+.+. +++|+.|+++.|.++|.+|..+..+.
T Consensus 182 ------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 182 ------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 788899999999887777789999999999999988754 45788999999999999998876654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.5e-21 Score=207.31 Aligned_cols=203 Identities=22% Similarity=0.219 Sum_probs=165.1
Q ss_pred ccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCC
Q 002097 472 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 551 (967)
Q Consensus 472 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 551 (967)
+++++++++++++++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 566777888888888887 777665 36788888888888877778888888888888888888765332 678889
Q ss_pred cEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCc
Q 002097 552 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM 631 (967)
Q Consensus 552 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~ 631 (967)
++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|+.|++++|.+++.
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~------------------- 139 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL------------------- 139 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-------------------
Confidence 99999999887 6777888888999999999988877778888888888888888888633
Q ss_pred CcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCc
Q 002097 632 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 706 (967)
Q Consensus 632 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 706 (967)
+.+.|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 140 -----~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 140 -----PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -----CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred -----ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 3336677888888899988888766677888899999999999998 67778888889999999999875
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.5e-21 Score=201.67 Aligned_cols=163 Identities=27% Similarity=0.280 Sum_probs=144.0
Q ss_pred CCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCC
Q 002097 645 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 724 (967)
Q Consensus 645 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 724 (967)
++++.|+|++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++|++++|++++..+..|..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------- 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC-------
Confidence 5788999999999888888888999999999999999988888888999999999999999887777776533
Q ss_pred CCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCc
Q 002097 725 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 804 (967)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 804 (967)
+|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 108 ----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 108 ----------------------------------------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp ----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 8999999999999777777899999999999999
Q ss_pred cccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 805 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 805 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
++++..+..|+.+++|+.|||++|++++..|..+..+++|++|++++|+++|....
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 99988888899999999999999999988888899999999999999999987443
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.9e-23 Score=231.71 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=108.3
Q ss_pred cccCCCCCcEEECcCccCCCCcchhhh----CC---------CCCCEEEcCCCcCc-ccCC---hhccCCCCCCEEECCC
Q 002097 640 TFFNCSSLVTLDLSYNYLNGSIPDWID----GL---------SQLSHLNLAHNNLE-GEVP---IQLCRLNQLQLLDLSD 702 (967)
Q Consensus 640 ~~~~~~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L~~L~Ls~ 702 (967)
.+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++ +.++ ..+..+++|++|++++
T Consensus 117 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence 345556666666666666533332222 22 67777777777765 2333 3455667777777777
Q ss_pred CcCcc-----cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEEC
Q 002097 703 NNLHG-----LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 777 (967)
Q Consensus 703 n~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 777 (967)
|+++. ..|..+.. +++|+.|+|
T Consensus 197 n~l~~~g~~~l~~~~l~~-----------------------------------------------------~~~L~~L~L 223 (386)
T 2ca6_A 197 NGIRPEGIEHLLLEGLAY-----------------------------------------------------CQELKVLDL 223 (386)
T ss_dssp SCCCHHHHHHHHHTTGGG-----------------------------------------------------CTTCCEEEC
T ss_pred CCCCHhHHHHHHHHHhhc-----------------------------------------------------CCCccEEEC
Confidence 76652 12212222 336777777
Q ss_pred CCCccc----CCCcccccCCCCCCEEECcCcccccc----CcccccC--CCCCCEEECcCCcCcc----cCCccc-cCCC
Q 002097 778 SCNKLV----GHIPPQIGNLTRIQTLNLSHNNLTGT----IPLTFSN--LRHIESLDLSYNKLSG----KIPRQL-VDLN 842 (967)
Q Consensus 778 s~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~ 842 (967)
++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+.. +++|+.|+|++|++++ .+|..+ .+++
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 777775 45677777888888888888888765 4566633 7888888888888887 477776 5578
Q ss_pred cCCeEecCCCcCccCCC
Q 002097 843 TLAIFIVAYNNLSGKIP 859 (967)
Q Consensus 843 ~L~~l~ls~N~l~~~~p 859 (967)
+|++|++++|++++..|
T Consensus 304 ~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 304 DLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTSBSCTTSH
T ss_pred CceEEEccCCcCCcchh
Confidence 88888888888887664
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.9e-23 Score=228.08 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=44.1
Q ss_pred ccceEECCCCcccCCCc----ccccCCCCCCEEECcCccccccC-------cccccCCCCCCEEECcCCcCcccCCccc
Q 002097 771 LLAGLDLSCNKLVGHIP----PQIGNLTRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSYNKLSGKIPRQL 838 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 838 (967)
+|++|||++|.+++..+ ..+..+++|+.|+|++|.+.+.. +..+..+++|+.||+++|++....|..+
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 56777777777765433 23456677777787777744333 3456677778888888888776655443
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=8.7e-23 Score=225.25 Aligned_cols=261 Identities=18% Similarity=0.180 Sum_probs=181.7
Q ss_pred eeccCccccccCCccCcCCCCCcEEECcCCcCCCCCC----ccccCCC-CCCEEECCCCccccCCCccccCC-----CCC
Q 002097 530 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP----RWLGNLK-GLQHIVMPKNHLEGPIPVEFCRL-----DSL 599 (967)
Q Consensus 530 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 599 (967)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566677776666655555557777777777765554 5566666 67777777777766655555543 667
Q ss_pred CEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCC-CCCcEEECcCccCCCCcchhhh----C-CCCCCE
Q 002097 600 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYNYLNGSIPDWID----G-LSQLSH 673 (967)
Q Consensus 600 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~ 673 (967)
++|++++|.+++..+..+ . ..+..+ ++|++|+|++|++++..+..+. . .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l-------------------~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDEL-------------------V-KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHH-------------------H-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHH-------------------H-HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 777777766654322110 0 024445 7899999999998877665543 3 368999
Q ss_pred EEcCCCcCcccC----ChhccCCC-CCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhh
Q 002097 674 LNLAHNNLEGEV----PIQLCRLN-QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 748 (967)
Q Consensus 674 L~L~~n~l~~~~----~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (967)
|+|++|++++.. +..+..++ +|++|+|++|++++..+..+...-
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------- 191 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------- 191 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------------------
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH-------------------------------
Confidence 999999998544 34445565 899999999998876654443210
Q ss_pred hheeeeeeccccccccchhhh-cccceEECCCCcccCC----CcccccC-CCCCCEEECcCccccccCc----ccccCCC
Q 002097 749 ILEIFEFTTKNIAYAYQGRVL-SLLAGLDLSCNKLVGH----IPPQIGN-LTRIQTLNLSHNNLTGTIP----LTFSNLR 818 (967)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~ 818 (967)
... ++|++|||++|.+++. ++..+.. .++|+.|+|++|.+++..+ ..+..++
T Consensus 192 ------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 192 ------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp ------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred ------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 001 3799999999999863 4555655 4599999999999997655 4467789
Q ss_pred CCCEEECcCCcCcccCC-------ccccCCCcCCeEecCCCcCccCCC
Q 002097 819 HIESLDLSYNKLSGKIP-------RQLVDLNTLAIFIVAYNNLSGKIP 859 (967)
Q Consensus 819 ~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~l~ls~N~l~~~~p 859 (967)
+|+.|+|++|.+.+..+ ..+..+++|+.+|+++|++....|
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 99999999999654433 356778999999999999987644
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.5e-21 Score=199.08 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEECCCCc-cccCCCccccCCCCCCEEeCcC-CcCCcCCCCCcCCCcccEEEc
Q 002097 550 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH-LEGPIPVEFCRLDSLQILDISD-NNISGSLPSCFYPLSIKQVHL 627 (967)
Q Consensus 550 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~L~~L~l 627 (967)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |.+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---------------- 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---------------- 95 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----------------
Confidence 55555555555554444455555555555555554 5444444555555555555554 44432
Q ss_pred cCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCC---EEEcCCC-cCcccCChhccCCCCCC-EEECCC
Q 002097 628 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS---HLNLAHN-NLEGEVPIQLCRLNQLQ-LLDLSD 702 (967)
Q Consensus 628 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~ 702 (967)
++...|.++++|++|++++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ .|++++
T Consensus 96 --------i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 96 --------IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp --------ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred --------cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 222245555555566666555553 333 45555555 5555555 55544444455555555 555555
Q ss_pred CcCc
Q 002097 703 NNLH 706 (967)
Q Consensus 703 n~l~ 706 (967)
|+++
T Consensus 166 n~l~ 169 (239)
T 2xwt_C 166 NGFT 169 (239)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.8e-21 Score=207.57 Aligned_cols=193 Identities=23% Similarity=0.353 Sum_probs=113.5
Q ss_pred CCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEE
Q 002097 547 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 626 (967)
Q Consensus 547 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 626 (967)
.+++|++|++++|.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~------------ 101 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S------------ 101 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G------------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h------------
Confidence 45566666666666653 33 45566666666666666654333 66666666666666665421 1
Q ss_pred ccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCc
Q 002097 627 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 706 (967)
Q Consensus 627 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 706 (967)
.+..+++|++|++++|++++. + .+..+++|++|++++|++++..+ +..+++|++|++++|.++
T Consensus 102 -------------~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 102 -------------AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp -------------GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred -------------hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 344556666666666666543 2 25666666666666666654332 556666666666666665
Q ss_pred ccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCC
Q 002097 707 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 786 (967)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 786 (967)
+..+ +.. +++|+.|++++|.+++..
T Consensus 165 ~~~~--l~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 165 DLTP--LAN-----------------------------------------------------LSKLTTLKADDNKISDIS 189 (308)
T ss_dssp CCGG--GTT-----------------------------------------------------CTTCCEEECCSSCCCCCG
T ss_pred CChh--hcC-----------------------------------------------------CCCCCEEECCCCccCcCh
Confidence 4332 222 225666666666666432
Q ss_pred cccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcc
Q 002097 787 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 832 (967)
Q Consensus 787 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 832 (967)
+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 2 6666777777777777765443 6667777777777777653
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.9e-21 Score=198.76 Aligned_cols=197 Identities=20% Similarity=0.288 Sum_probs=150.3
Q ss_pred CCCCEEECCCCccccCCCccccCCCCCCEEeCcCCc-CCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEE
Q 002097 573 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN-ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 651 (967)
Q Consensus 573 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 651 (967)
++|++|++++|++++..+..|.++++|+.|++++|+ ++ .++...|.++++|++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------------~i~~~~f~~l~~L~~L~ 86 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------------QLESHSFYNLSKVTHIE 86 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------------EECTTTEESCTTCCEEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------------eeCHhHcCCCcCCcEEE
Confidence 367777777777776666677777777777777775 54 33334678888999999
Q ss_pred CcC-ccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCC---EEECCCC-cCcccCCCcccccccccccCCCC
Q 002097 652 LSY-NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ---LLDLSDN-NLHGLIPSCFDNTTLHESYNNNS 726 (967)
Q Consensus 652 L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~~ 726 (967)
+++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|..++
T Consensus 87 l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~--------- 155 (239)
T 2xwt_C 87 IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC--------- 155 (239)
T ss_dssp EEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB---------
T ss_pred CCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh---------
Confidence 998 88887777788889999999999998885 565 77888887 8999988 88877776666533
Q ss_pred CCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccc-eEECCCCcccCCCcccccCCCCCCEEECcCcc
Q 002097 727 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA-GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 805 (967)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 805 (967)
+|+ +|++++|+++...+..|.. ++|+.|+|++|+
T Consensus 156 --------------------------------------------~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~ 190 (239)
T 2xwt_C 156 --------------------------------------------NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNK 190 (239)
T ss_dssp --------------------------------------------SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCT
T ss_pred --------------------------------------------cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCC
Confidence 788 8888888888433334444 788888888884
Q ss_pred -ccccCcccccCC-CCCCEEECcCCcCcccCCccccCCCcCCeEecCCC
Q 002097 806 -LTGTIPLTFSNL-RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 852 (967)
Q Consensus 806 -l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 852 (967)
+++..+..|+.+ ++|+.||+++|++++ +|.. .++.|+.|+++++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 887777888888 888888888888884 4443 5677888888776
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.1e-22 Score=219.18 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=100.8
Q ss_pred ccCCCCCcEEECcCc-cCCCC-cchhhhCCCCCCEEEcCCC-cCccc-CChhccCCC-CCCEEECCCCc--Cc-ccCCCc
Q 002097 641 FFNCSSLVTLDLSYN-YLNGS-IPDWIDGLSQLSHLNLAHN-NLEGE-VPIQLCRLN-QLQLLDLSDNN--LH-GLIPSC 712 (967)
Q Consensus 641 ~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls~n~--l~-~~~~~~ 712 (967)
+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|..
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 444555555555555 34432 4444555666666666666 66543 345556666 66666666663 32 112221
Q ss_pred ccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCc-ccCCCccccc
Q 002097 713 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK-LVGHIPPQIG 791 (967)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~ 791 (967)
+.. +++|++|++++|. +++..+..+.
T Consensus 218 ~~~-----------------------------------------------------~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 218 VRR-----------------------------------------------------CPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHH-----------------------------------------------------CTTCSEEECTTCTTCCGGGGGGGG
T ss_pred Hhh-----------------------------------------------------CCCCCEEeCCCCCcCCHHHHHHHh
Confidence 111 3367777777777 5556666778
Q ss_pred CCCCCCEEECcCcc-ccccCcccccCCCCCCEEECcCCcCcccCCccccCC-CcCCeEecCCCcCccCCCCCc
Q 002097 792 NLTRIQTLNLSHNN-LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYNNLSGKIPEWT 862 (967)
Q Consensus 792 ~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~~~~p~~~ 862 (967)
.+++|+.|++++|. ++......++.+++|+.|++++| ++ ...+..+ ..+..|++++|++++..|...
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcc
Confidence 88888888888885 33222236778889999999988 33 2234444 347777889999999888753
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=7.4e-23 Score=228.37 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=95.3
Q ss_pred CCCcEEECcCccCC-CCcc---hhhhCCCCCCEEEcCCCcCcc-----cCChhccCCCCCCEEECCCCcCc----ccCCC
Q 002097 645 SSLVTLDLSYNYLN-GSIP---DWIDGLSQLSHLNLAHNNLEG-----EVPIQLCRLNQLQLLDLSDNNLH----GLIPS 711 (967)
Q Consensus 645 ~~L~~L~L~~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~ 711 (967)
++|++|++++|+++ +.+| ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 56667777777665 2333 345566777777777777762 23336667777777777777765 33333
Q ss_pred cccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCC----Cc
Q 002097 712 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH----IP 787 (967)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p 787 (967)
.+.. +++|++|+|++|.+++. +|
T Consensus 239 ~l~~-----------------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 239 ALKS-----------------------------------------------------WPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp HGGG-----------------------------------------------------CTTCCEEECTTCCCCHHHHHHHH
T ss_pred HHcc-----------------------------------------------------CCCcCEEECCCCCCchhhHHHHH
Confidence 3332 23677777777777654 45
Q ss_pred cccc--CCCCCCEEECcCccccc----cCcccc-cCCCCCCEEECcCCcCcccCC
Q 002097 788 PQIG--NLTRIQTLNLSHNNLTG----TIPLTF-SNLRHIESLDLSYNKLSGKIP 835 (967)
Q Consensus 788 ~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p 835 (967)
..+. .+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5663 48899999999999997 477777 668999999999999997774
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=3.1e-22 Score=219.15 Aligned_cols=234 Identities=19% Similarity=0.224 Sum_probs=122.4
Q ss_pred cccceeccCccccccCCccCcCCCCCcEEECcCCcCCCC-CCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeC
Q 002097 526 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK-IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 604 (967)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 604 (967)
+++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 344444444444433332 33445555555555555433 4444555555555555555555445555555566666666
Q ss_pred cCC-cCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCc-cCCCC-cchhhhCCC-CCCEEEcCCC-
Q 002097 605 SDN-NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGS-IPDWIDGLS-QLSHLNLAHN- 679 (967)
Q Consensus 605 ~~n-~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n- 679 (967)
++| .+++. .++. .+..+++|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus 150 ~~~~~l~~~----------------------~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 150 SGCSGFSEF----------------------ALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TTCBSCCHH----------------------HHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CCCCCCCHH----------------------HHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 655 33321 0111 3444555666666665 55533 345555566 6666666666
Q ss_pred -cCc-ccCChhccCCCCCCEEECCCCc-CcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeee
Q 002097 680 -NLE-GEVPIQLCRLNQLQLLDLSDNN-LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 756 (967)
Q Consensus 680 -~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (967)
.++ +.+|..+..+++|+.|++++|. +++..+..+..
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----------------------------------------- 245 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ----------------------------------------- 245 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-----------------------------------------
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-----------------------------------------
Confidence 333 3344555556666666666665 44333333332
Q ss_pred ccccccccchhhhcccceEECCCCc-ccCCCcccccCCCCCCEEECcCccccccCcccccCC-CCCCEEECcCCcCcccC
Q 002097 757 TKNIAYAYQGRVLSLLAGLDLSCNK-LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLSGKI 834 (967)
Q Consensus 757 ~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~ 834 (967)
+++|++|++++|. +.......+..+++|+.|++++| ++. +.+..+ .+++.|++++|++++..
T Consensus 246 ------------l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 246 ------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp ------------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTT
T ss_pred ------------CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcccc
Confidence 2256666666664 22111124667777888888777 332 233333 23666667888888777
Q ss_pred CccccC
Q 002097 835 PRQLVD 840 (967)
Q Consensus 835 p~~l~~ 840 (967)
|..+..
T Consensus 310 ~~~~~~ 315 (336)
T 2ast_B 310 RPTIGN 315 (336)
T ss_dssp CSSCSS
T ss_pred CCcccc
Confidence 766543
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=209.27 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCccc--C--ChhccCCCCCCEEECCCCcCcccCCCccccccc
Q 002097 643 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE--V--PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 718 (967)
Q Consensus 643 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 718 (967)
.+++|++|+|++|++.+..|..++.+++|++|+|++|++.+. + +..+..+++|++|++++|+++...+.... .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-l-- 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA-L-- 219 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH-H--
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH-H--
Confidence 455566666666666555555566666666666666665431 1 12234566666666666665422110000 0
Q ss_pred ccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCC---CC
Q 002097 719 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL---TR 795 (967)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~ 795 (967)
...+++|++|||++|.+++..|..+..+ ++
T Consensus 220 -----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 252 (310)
T 4glp_A 220 -----------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA 252 (310)
T ss_dssp -----------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT
T ss_pred -----------------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCc
Confidence 0113366666666666666656555555 47
Q ss_pred CCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCcc
Q 002097 796 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 856 (967)
Q Consensus 796 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 856 (967)
|+.|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..++.|+.|++++|+++.
T Consensus 253 L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 253 LNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 777777777777 4455553 6777777777777753 32 4566777777777777653
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=4.8e-20 Score=191.88 Aligned_cols=161 Identities=29% Similarity=0.318 Sum_probs=139.0
Q ss_pred cccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEC
Q 002097 621 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 700 (967)
Q Consensus 621 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 700 (967)
+++.|++++|.+.+..+. .|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+|
T Consensus 36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 445555555555443333 7888999999999999999888888999999999999999999888888999999999999
Q ss_pred CCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCC
Q 002097 701 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 780 (967)
Q Consensus 701 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 780 (967)
++|++++..+..|..++ +|++|+|++|
T Consensus 115 ~~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N 141 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLT-----------------------------------------------------KLKELRLNTN 141 (251)
T ss_dssp CSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCcCCCcChhHhccCC-----------------------------------------------------cccEEECcCC
Confidence 99999988777776543 8999999999
Q ss_pred cccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCC
Q 002097 781 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 835 (967)
Q Consensus 781 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 835 (967)
++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++...
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 9997777789999999999999999999888899999999999999999987633
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=206.51 Aligned_cols=56 Identities=29% Similarity=0.454 Sum_probs=32.9
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCc
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 831 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 831 (967)
+|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|+|++|+++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 4555555555555 4454443 5666666666666643 22 455666666666666665
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=6.3e-20 Score=196.97 Aligned_cols=196 Identities=24% Similarity=0.390 Sum_probs=161.7
Q ss_pred ccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCc
Q 002097 569 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 648 (967)
Q Consensus 569 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 648 (967)
...+++|++|++++|.+.. ++ .+..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~------------------------~~--~~~~l~~L~ 88 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD------------------------LA--PLKNLTKIT 88 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC------------------------CG--GGTTCCSCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC------------------------Ch--hHccCCCCC
Confidence 3456788888888887764 33 56777788888887777652 22 277889999
Q ss_pred EEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCC
Q 002097 649 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP 728 (967)
Q Consensus 649 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~ 728 (967)
+|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +..
T Consensus 89 ~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~------------- 149 (308)
T 1h6u_A 89 ELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG------------- 149 (308)
T ss_dssp EEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred EEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC-------------
Confidence 999999999864 3689999999999999999864 3 38999999999999999986654 333
Q ss_pred CCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccc
Q 002097 729 DKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 808 (967)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 808 (967)
+++|+.|++++|.+++. +. +..+++|+.|++++|.+++
T Consensus 150 ----------------------------------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 150 ----------------------------------------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc
Confidence 34899999999999964 43 9999999999999999997
Q ss_pred cCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccC
Q 002097 809 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 857 (967)
Q Consensus 809 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 857 (967)
..+ +..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 654 8899999999999999996654 88999999999999999863
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.8e-19 Score=197.58 Aligned_cols=242 Identities=17% Similarity=0.139 Sum_probs=147.9
Q ss_pred cEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcE-EEc
Q 002097 430 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF-LSL 508 (967)
Q Consensus 430 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~-L~L 508 (967)
++++-++++++ .+|..+ .+++++|++++|+++.+.+.+|.++++|++|+|++|++.+.+|..+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 35566666665 556543 2356666666666664444456666666666666666544455554444444433 333
Q ss_pred ccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCC-Ccccc
Q 002097 509 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEG 587 (967)
Q Consensus 509 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~ 587 (967)
..|++.. ..|..|..+++|++|++++|++.+..+..+....++..+++.+ +++..
T Consensus 88 ~~N~l~~------------------------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLY------------------------INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCE------------------------ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred cCCcccc------------------------cCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 3444444 4444455555555555555555444333444444555555543 34444
Q ss_pred CCCccccCCC-CCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhh
Q 002097 588 PIPVEFCRLD-SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 666 (967)
Q Consensus 588 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 666 (967)
..+..|..+. .++.|++++|+++...+..+...+++++++.++...+.+|...|.++++|++|||++|+++...+..
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-- 221 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-- 221 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence 4444555543 4667777777777655566666777777777655556788778999999999999999999554443
Q ss_pred CCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCC
Q 002097 667 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 703 (967)
Q Consensus 667 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 703 (967)
+.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5566777766655444666 4788999999999865
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.3e-19 Score=196.66 Aligned_cols=206 Identities=24% Similarity=0.214 Sum_probs=129.3
Q ss_pred CEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCC-ccCcCCCCCcE-EEC
Q 002097 479 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKG-LYL 556 (967)
Q Consensus 479 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L 556 (967)
++++.++++++ ++|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777778887 777765 3577888888888776555667777777777777777655444 35666666654 455
Q ss_pred cCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCC-cCCcCCCCCcCCCcccEEEccCCcCccc
Q 002097 557 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN-NISGSLPSCFYPLSIKQVHLSKNMLHGQ 635 (967)
Q Consensus 557 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 635 (967)
+.|+++...|..|..+++|++|++++|++....+..+....++..+++.++ .+. .
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence 567776666666777777777777777766555555555555555655442 232 3
Q ss_pred CCcccccCCC-CCcEEECcCccCCCCcchhhhCCCCCCEEEcCC-CcCcccCChhccCCCCCCEEECCCCcCcccCCCcc
Q 002097 636 LKEGTFFNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 713 (967)
Q Consensus 636 ~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 713 (967)
++...|..+. .++.|+|++|+++...+..| ...+|++|++.+ |.++...++.|..+++|++||+++|+++..++..|
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 3333444443 46677777777764333333 345677777764 44553334456777777777777777765554444
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5e-19 Score=178.46 Aligned_cols=160 Identities=26% Similarity=0.261 Sum_probs=137.1
Q ss_pred CCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccC
Q 002097 644 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 723 (967)
Q Consensus 644 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 723 (967)
.++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------ 100 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence 45888999999999877777788899999999999999877667788899999999999999877776665533
Q ss_pred CCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcC
Q 002097 724 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 803 (967)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 803 (967)
+|++|++++|++++..+..|..+++|+.|+|++
T Consensus 101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 899999999999977777789999999999999
Q ss_pred ccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCcc
Q 002097 804 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTA 863 (967)
Q Consensus 804 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 863 (967)
|.+++..+..|+.+++|+.|++++|++.+. ++.|++|+++.|+++|.+|.+++
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCc
Confidence 999988888899999999999999988754 44688999999999999998643
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=3e-19 Score=205.37 Aligned_cols=115 Identities=26% Similarity=0.381 Sum_probs=68.8
Q ss_pred CCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECc
Q 002097 574 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 653 (967)
Q Consensus 574 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 653 (967)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| -.+++|+.|++++|.+.+ +|. +.. +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence 78888888888876 55544 367888888888877 444 224566666666666654 443 322 56666666
Q ss_pred CccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcc
Q 002097 654 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG 707 (967)
Q Consensus 654 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 707 (967)
+|++++ +|. .+++|++|++++|++++ +|. .+++|++|+|++|++++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 666654 333 45556666666666553 333 34556666666665554
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=180.96 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=135.4
Q ss_pred cEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCC-hhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCC
Q 002097 648 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 726 (967)
Q Consensus 648 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 726 (967)
+.+++++|.++. +|..+. +.+++|+|++|++++..+ ..|..+++|++|+|++|.+++..+..|..++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------- 81 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--------- 81 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence 478888888874 555443 456889999999987654 4578899999999999999888877776644
Q ss_pred CCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccc
Q 002097 727 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 806 (967)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 806 (967)
+|++|+|++|.+++..|..|..+++|++|+|++|++
T Consensus 82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 899999999999988888899999999999999999
Q ss_pred cccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 807 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 807 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|+++|.++.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999999999999999999999999999899999999999999999999998874
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=7.7e-19 Score=178.16 Aligned_cols=156 Identities=22% Similarity=0.264 Sum_probs=128.1
Q ss_pred cEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCC
Q 002097 648 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS 727 (967)
Q Consensus 648 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~ 727 (967)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|+|++|.+++..|..|..++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~---------- 80 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR---------- 80 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence 46777777776 4454333 5788888888888877777788888888888888888888777776644
Q ss_pred CCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCcccc
Q 002097 728 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 807 (967)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 807 (967)
+|++|+|++|.++...+..|..+++|+.|+|++|.++
T Consensus 81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 7888888888888666666888999999999999999
Q ss_pred ccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCC
Q 002097 808 GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 859 (967)
Q Consensus 808 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 859 (967)
+..|..|..+++|+.|+|++|++++..+..+..+++|+.+++++|++.|.++
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 8888999999999999999999998888888889999999999999988665
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.8e-18 Score=174.33 Aligned_cols=161 Identities=22% Similarity=0.247 Sum_probs=74.1
Q ss_pred CCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECC
Q 002097 502 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 581 (967)
Q Consensus 502 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 581 (967)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333344444445555555544443333344455555555555555554444444555555555555
Q ss_pred CCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcC-CCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCC
Q 002097 582 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 660 (967)
Q Consensus 582 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 660 (967)
+|++++..+..|..+++|+.|++++|.+++..+..+. +++|+.|++++|.+. ..+++|+.|+++.|+++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCce
Confidence 5555544444445555555555555555432222111 222333333322221 1234455555555555555
Q ss_pred cchhhhCCCC
Q 002097 661 IPDWIDGLSQ 670 (967)
Q Consensus 661 ~~~~~~~l~~ 670 (967)
+|.+++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 5555554443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=3.1e-18 Score=196.94 Aligned_cols=194 Identities=28% Similarity=0.330 Sum_probs=143.9
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccC
Q 002097 550 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 629 (967)
Q Consensus 550 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 629 (967)
+++.|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence 89999999999986 666553 78999999999998 455 457899999999999987 666 333 999999999
Q ss_pred CcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccC
Q 002097 630 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 709 (967)
Q Consensus 630 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 709 (967)
|.+.+ +|. .+++|+.|+|++|.+++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+++. +
T Consensus 130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-l 195 (571)
T 3cvr_A 130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-L 195 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-C
T ss_pred CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-h
Confidence 99987 655 57899999999999986 555 57899999999999986 666 65 899999999998873 3
Q ss_pred CCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCccc
Q 002097 710 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 789 (967)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 789 (967)
|. +.. .+ ....+.|+.|+|++|.|+ .+|..
T Consensus 196 p~-~~~-~L-----------------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 196 PA-VPV-RN-----------------------------------------------HHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp CC-CC--------------------------------------------------------CCEEEECCSSCCC-CCCGG
T ss_pred hh-HHH-hh-----------------------------------------------hcccccceEEecCCCcce-ecCHH
Confidence 33 321 00 000123466677777666 45665
Q ss_pred ccCCCCCCEEECcCccccccCcccccCC
Q 002097 790 IGNLTRIQTLNLSHNNLTGTIPLTFSNL 817 (967)
Q Consensus 790 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 817 (967)
+..+++|+.|+|++|.+++.+|..++.+
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 6566666666666666666666665544
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=4.5e-18 Score=172.50 Aligned_cols=158 Identities=22% Similarity=0.305 Sum_probs=143.4
Q ss_pred CEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhhe
Q 002097 672 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 751 (967)
Q Consensus 672 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (967)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..|..++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~---------------------------------- 56 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK---------------------------------- 56 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence 67999999998 5676554 7899999999999988887776644
Q ss_pred eeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCc
Q 002097 752 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 831 (967)
Q Consensus 752 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 831 (967)
+|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|+++
T Consensus 57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 8999999999999888999999999999999999999888888999999999999999999
Q ss_pred ccCCccccCCCcCCeEecCCCcCccCCCCCcccccccCcccccCCcCCCCCCCC
Q 002097 832 GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 885 (967)
Q Consensus 832 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l~ 885 (967)
+..|..+..+++|++|++++|++++..+..+..+..+....+.+||+.|.|++.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 999999999999999999999999888876777888889999999999998764
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=3.8e-18 Score=187.78 Aligned_cols=162 Identities=29% Similarity=0.279 Sum_probs=131.5
Q ss_pred CCCcEEECcCccCCCCcchhhh-CCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccC
Q 002097 645 SSLVTLDLSYNYLNGSIPDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 723 (967)
Q Consensus 645 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 723 (967)
+.++.|+|++|++++..+.++. ++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 112 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ------ 112 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc------
Confidence 4577888888888877777777 788888888888888877777888888888888888888877777666533
Q ss_pred CCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcC
Q 002097 724 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 803 (967)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 803 (967)
+|+.|+|++|.+++..|..|..+++|+.|+|++
T Consensus 113 -----------------------------------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 113 -----------------------------------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp -----------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred -----------------------------------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 788889999988887788889999999999999
Q ss_pred ccccccCcccc---cCCCCCCEEECcCCcCcccCCccccCCCc--CCeEecCCCcCccCCC
Q 002097 804 NNLTGTIPLTF---SNLRHIESLDLSYNKLSGKIPRQLVDLNT--LAIFIVAYNNLSGKIP 859 (967)
Q Consensus 804 N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~l~ls~N~l~~~~p 859 (967)
|.+++..+..| ..+++|+.|||++|++++..+..+..++. ++.|++++|++.|.+.
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 99987666666 56889999999999998666677777776 4889999999988654
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=3e-18 Score=188.59 Aligned_cols=181 Identities=25% Similarity=0.246 Sum_probs=152.3
Q ss_pred cEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhcc-CCCCCCEEECCCCcCcccCCCcccccccccccCCCC
Q 002097 648 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 726 (967)
Q Consensus 648 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 726 (967)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------- 88 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--------- 88 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC---------
Confidence 57899999988 4565443 4689999999999988888887 999999999999999998888887644
Q ss_pred CCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccc
Q 002097 727 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 806 (967)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 806 (967)
+|++|+|++|++++..+..|..+++|+.|+|++|.+
T Consensus 89 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 89 --------------------------------------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp --------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence 899999999999988888899999999999999999
Q ss_pred cccCcccccCCCCCCEEECcCCcCcccCCccc---cCCCcCCeEecCCCcCccCCCCCccccccc--CcccccCCcCCCC
Q 002097 807 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL---VDLNTLAIFIVAYNNLSGKIPEWTAQFATF--NKSSYDGNPFLCG 881 (967)
Q Consensus 807 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~--~~~~~~~n~~lc~ 881 (967)
++..|..|..+++|+.|+|++|++++..+..+ ..+++|+.|++++|++++..+..+..+..+ ....+.+||+.|+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99999999999999999999999996544445 579999999999999996544433444432 5568899999999
Q ss_pred CCC
Q 002097 882 LPL 884 (967)
Q Consensus 882 ~~l 884 (967)
|.+
T Consensus 205 C~l 207 (361)
T 2xot_A 205 CKL 207 (361)
T ss_dssp HHH
T ss_pred cCc
Confidence 864
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.1e-17 Score=171.03 Aligned_cols=157 Identities=25% Similarity=0.253 Sum_probs=125.4
Q ss_pred CcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCC
Q 002097 647 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 726 (967)
Q Consensus 647 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 726 (967)
-+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..|..++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--------- 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT--------- 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence 456777777776 4454332 7788888888888877777888888888888888888766666665533
Q ss_pred CCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccc
Q 002097 727 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 806 (967)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 806 (967)
+|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 788888888888877677788899999999999999
Q ss_pred cccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002097 807 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 807 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
+ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 8 6788888899999999999999877777788899999999999999988763
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=8.2e-18 Score=170.58 Aligned_cols=158 Identities=18% Similarity=0.287 Sum_probs=141.9
Q ss_pred CEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCC-CcccccccccccCCCCCCCCCcccccccCCCCCchhhhhh
Q 002097 672 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 750 (967)
Q Consensus 672 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (967)
+.+++++|.++ .+|..+. +.+++|+|++|.+++..+ ..|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~----------------------------------- 55 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK----------------------------------- 55 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGG-----------------------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhcc-----------------------------------
Confidence 58999999998 4676553 467999999999998865 34554
Q ss_pred eeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcC
Q 002097 751 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 830 (967)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 830 (967)
+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|++
T Consensus 56 ------------------l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 56 ------------------LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred ------------------CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 34899999999999988888999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCcCCeEecCCCcCccCCCCCcccccccCcccccCCcCCCCCCCC
Q 002097 831 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 885 (967)
Q Consensus 831 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l~ 885 (967)
++..|..+..+++|++|++++|++++..|..+..+..+....+.+||+.|.|++.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 9999999999999999999999999998988888889999999999999998754
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.9e-17 Score=192.85 Aligned_cols=150 Identities=25% Similarity=0.388 Sum_probs=81.3
Q ss_pred cCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCE
Q 002097 522 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 601 (967)
Q Consensus 522 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 601 (967)
..+++|+.|++++|.+... + .+..+++|+.|+|++|++.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 3455555555555555422 2 34555555555555555554332 45555555555555555431 13444444555
Q ss_pred EeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcC
Q 002097 602 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 681 (967)
Q Consensus 602 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 681 (967)
|+|++|.+.+ ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++
T Consensus 114 L~Ls~N~l~~------------------------l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 114 LSLEHNGISD------------------------IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp EECTTSCCCC------------------------CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred EEecCCCCCC------------------------Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 5544444431 11 355566666666666666644 4466666666666666666
Q ss_pred cccCChhccCCCCCCEEECCCCcCcc
Q 002097 682 EGEVPIQLCRLNQLQLLDLSDNNLHG 707 (967)
Q Consensus 682 ~~~~~~~~~~l~~L~~L~Ls~n~l~~ 707 (967)
.+..| +..+++|+.|+|++|++++
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCchh--hccCCCCCEEECcCCCCCC
Confidence 65444 6666666666666666654
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=5.1e-17 Score=165.99 Aligned_cols=157 Identities=25% Similarity=0.343 Sum_probs=140.5
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhh
Q 002097 670 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 749 (967)
Q Consensus 670 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (967)
+-+.++.++++++ .+|..+. ++|++|+|++|.+++..|..|..++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-------------------------------- 64 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-------------------------------- 64 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence 3568999999998 6666553 8999999999999999888887644
Q ss_pred heeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCc
Q 002097 750 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 829 (967)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 829 (967)
+|++|+|++|+++...+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 89999999999987666778999999999999999998888889999999999999999
Q ss_pred CcccCCccccCCCcCCeEecCCCcCccCCCCCcccccccCcccccCCcCCCCCC
Q 002097 830 LSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 883 (967)
Q Consensus 830 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~ 883 (967)
++ .+|..+..+++|++|++++|++++..+..+..+..+....+.+||+.|.|+
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99 889999999999999999999998777667778888889999999999885
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1.2e-17 Score=177.58 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=73.6
Q ss_pred cccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCc
Q 002097 526 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 605 (967)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 605 (967)
++..+.+..+.+.+..+ +..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 34444455554443322 23456666777777666532 2 35566666666666666654333 5566666666666
Q ss_pred CCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccC
Q 002097 606 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 685 (967)
Q Consensus 606 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 685 (967)
+|.+.+ ++ .+..+++|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 99 ~n~l~~------------------------~~--~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 99 ENKVKD------------------------LS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI- 149 (291)
T ss_dssp SSCCCC------------------------GG--GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-
T ss_pred CCcCCC------------------------Ch--hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-
Confidence 665542 11 244455555555555555532 2344455555555555555432
Q ss_pred ChhccCCCCCCEEECCCCcCc
Q 002097 686 PIQLCRLNQLQLLDLSDNNLH 706 (967)
Q Consensus 686 ~~~~~~l~~L~~L~Ls~n~l~ 706 (967)
..+..+++|++|++++|+++
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCC
T ss_pred -hhhccCCCCCEEEccCCccc
Confidence 23444444444444444433
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.6e-17 Score=172.90 Aligned_cols=172 Identities=24% Similarity=0.370 Sum_probs=127.3
Q ss_pred cCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCE
Q 002097 594 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH 673 (967)
Q Consensus 594 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 673 (967)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~------------------------~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~ 94 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS------------------------VQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94 (291)
T ss_dssp HHHHTCCEEECTTSCCCC------------------------CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc------------------------Ch--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCE
Confidence 456677777777776652 21 35667788888888888876544 777888888
Q ss_pred EEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheee
Q 002097 674 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF 753 (967)
Q Consensus 674 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (967)
|++++|++++ ++ .+..+++|++|++++|++++. ..+..
T Consensus 95 L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~-------------------------------------- 132 (291)
T 1h6t_A 95 LFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVH-------------------------------------- 132 (291)
T ss_dssp EECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGG--------------------------------------
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcC--------------------------------------
Confidence 8888888874 33 477888888888888887653 12222
Q ss_pred eeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCccc
Q 002097 754 EFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 833 (967)
Q Consensus 754 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 833 (967)
+++|+.|++++|++++. ..+..+++|+.|++++|.+++..| ++.+++|+.|++++|++++
T Consensus 133 ---------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 133 ---------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp ---------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred ---------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence 34788888888888754 568888888888888888887655 8888888888888888875
Q ss_pred CCccccCCCcCCeEecCCCcCcc
Q 002097 834 IPRQLVDLNTLAIFIVAYNNLSG 856 (967)
Q Consensus 834 ~p~~l~~l~~L~~l~ls~N~l~~ 856 (967)
+| .+..+++|+.|++++|+++.
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred Ch-hhccCCCCCEEECcCCcccC
Confidence 34 37888888888888888875
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.1e-17 Score=162.42 Aligned_cols=111 Identities=30% Similarity=0.432 Sum_probs=82.7
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
+|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 67777777777777777778888888888888888888777778888888888888888888888888888888888888
Q ss_pred CCcCccCCCCCcccccc-cCcccccCCcCCCCCC
Q 002097 851 YNNLSGKIPEWTAQFAT-FNKSSYDGNPFLCGLP 883 (967)
Q Consensus 851 ~N~l~~~~p~~~~~~~~-~~~~~~~~n~~lc~~~ 883 (967)
+|+++|.++. .++.. +....+.++...|+.|
T Consensus 135 ~N~l~c~c~l--~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 135 SNPFNCNCHL--AWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TCCBCCSGGG--HHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCccCcCcc--hHHHHHHHHcCCCCCCCCCCCC
Confidence 8888887764 22222 2333455566667655
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.5e-16 Score=185.28 Aligned_cols=198 Identities=23% Similarity=0.307 Sum_probs=159.1
Q ss_pred CCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEEC
Q 002097 477 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 556 (967)
Q Consensus 477 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 556 (967)
.+..+.+..+.+.+.++. ..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..| +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345567777777744443 2378999999999999854 3 58899999999999999997654 889999999999
Q ss_pred cCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccC
Q 002097 557 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 636 (967)
Q Consensus 557 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 636 (967)
++|.+.+ +| .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l------------------------ 146 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI------------------------ 146 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC------------------------
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc------------------------
Confidence 9999985 34 689999999999999999863 4688999999999999988742
Q ss_pred CcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccc
Q 002097 637 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 715 (967)
Q Consensus 637 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 715 (967)
..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++.+. ..+..+++|+.|+|++|++.+.+...+..
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccccc
Confidence 156777888888888888887665 78888888888888888853 35788888888888888887655444433
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=6.5e-17 Score=160.14 Aligned_cols=175 Identities=23% Similarity=0.273 Sum_probs=130.6
Q ss_pred cEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCCh-hccCCCCCCEEECCCCcCcccCCCcccccccccccCCCC
Q 002097 648 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 726 (967)
Q Consensus 648 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 726 (967)
+.+++++|.++ .+|..+. .+|++|++++|++++..+. .+..+++|++|+|++|.+++..|..|..++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------- 78 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------- 78 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence 57788888886 5555443 3788888888888866654 478889999999999999888888777644
Q ss_pred CCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccc
Q 002097 727 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 806 (967)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 806 (967)
+|++|+|++|++++..|..|..+++|+.|+|++|++
T Consensus 79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 789999999999988888899999999999999999
Q ss_pred cccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCcccccccCcccccCCcCCCCC
Q 002097 807 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGL 882 (967)
Q Consensus 807 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~ 882 (967)
++.+|..|+.+++|+.|+|++|++.+..+.... ...++...+..+...|..|.. +....-.++..+...|..
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~---l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCC
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChH---HcCCChhhCcHhhcCcCC
Confidence 999999999999999999999999987663210 112233345566666666653 233333445556666654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.3e-16 Score=158.84 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=123.6
Q ss_pred ccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccccccccc
Q 002097 641 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 720 (967)
Q Consensus 641 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 720 (967)
...+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l---- 111 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGL---- 111 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTC----
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCC----
Confidence 355678888999998888 455 5888889999999999765 33478888999999999998887777666553
Q ss_pred ccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEE
Q 002097 721 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 800 (967)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 800 (967)
++|++|++++|.+++..|..+..+++|+.|+
T Consensus 112 -------------------------------------------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 112 -------------------------------------------------TSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp -------------------------------------------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred -------------------------------------------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 3789999999999887888899999999999
Q ss_pred CcCcc-ccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCcc
Q 002097 801 LSHNN-LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 856 (967)
Q Consensus 801 Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 856 (967)
+++|. ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99998 55 455 68889999999999999985 44 77888999999999998764
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.1e-19 Score=208.18 Aligned_cols=77 Identities=25% Similarity=0.234 Sum_probs=46.6
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccC-cccccCCCCCCEEECcCCcCcccCCcc---ccCCCcCCe
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGKIPRQ---LVDLNTLAI 846 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~ 846 (967)
+|+.|+|++|.+++ +| .|+.+++|+.|+|++|++++.+ |..|+.+++|+.|+|++|++++..|.. +..+++|++
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 55555555555554 44 5666666666666666666665 666666666777777777666554421 233566666
Q ss_pred Eec
Q 002097 847 FIV 849 (967)
Q Consensus 847 l~l 849 (967)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 653
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.2e-16 Score=166.78 Aligned_cols=168 Identities=20% Similarity=0.243 Sum_probs=131.5
Q ss_pred ccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECC
Q 002097 622 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 701 (967)
Q Consensus 622 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 701 (967)
+..++++++.+.+.. .+..+++|+.|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 344444444443222 46677889999999998884 44 68888999999999999986544 8889999999999
Q ss_pred CCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCc
Q 002097 702 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 781 (967)
Q Consensus 702 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 781 (967)
+|++++..+... ++|+.|++++|.
T Consensus 94 ~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N~ 117 (263)
T 1xeu_A 94 RNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNNE 117 (263)
T ss_dssp SSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSSC
T ss_pred CCccCCcCcccc--------------------------------------------------------CcccEEEccCCc
Confidence 998876432111 278999999999
Q ss_pred ccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCC
Q 002097 782 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 858 (967)
Q Consensus 782 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 858 (967)
+++. + .+..+++|+.|++++|++++. | .++.+++|+.|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 118 l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 118 LRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 9853 3 588999999999999999875 3 688899999999999999876 67888999999999999988763
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=2e-16 Score=171.76 Aligned_cols=76 Identities=16% Similarity=0.070 Sum_probs=42.6
Q ss_pred ccceEECCCCcccCCCcccccCCCCCC-EEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEe
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 848 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 848 (967)
+|++++|++| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|++....+..|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 4555555554 4434444555566665 666655 55545555566666666666666666555555555555555554
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.8e-16 Score=164.03 Aligned_cols=176 Identities=19% Similarity=0.238 Sum_probs=126.7
Q ss_pred CCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEE
Q 002097 523 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 602 (967)
Q Consensus 523 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 602 (967)
.+.++..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3455666666666665332 35566677777777776663 34 56667777777777777765443 6677777777
Q ss_pred eCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCc
Q 002097 603 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 682 (967)
Q Consensus 603 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 682 (967)
++++|++++ +|.... .+|+.|++++|.+.+. + .+..+++|+.|++++|++++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIPS-ACLSRLFLDNNELRDT-D--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTCCC-SSCCEEECCSSCCSBS-G--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCcccc-CcccEEEccCCccCCC-h--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777765 333333 6777777777777653 2 588899999999999999865 3 6889999999999999999
Q ss_pred ccCChhccCCCCCCEEECCCCcCcccCCCcc
Q 002097 683 GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 713 (967)
Q Consensus 683 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 713 (967)
+. ..+..+++|+.|++++|++++.....+
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~~~~~~ 192 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNEPVKYQ 192 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECCCEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCCccccc
Confidence 66 678899999999999999887644433
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.2e-16 Score=171.40 Aligned_cols=284 Identities=14% Similarity=0.123 Sum_probs=187.6
Q ss_pred CCCCCEEEccCCcCCCccchhHhhcCCCCcEEEccccccc--ccccccccCCccccceeccCccccccCCccCcC-----
Q 002097 475 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK--GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK----- 547 (967)
Q Consensus 475 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 547 (967)
+.+++.|.++++- ...--..+...+++|++|||++|++. ..... .++.++.+.+..|.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 5678889888642 21111122222778999999999887 22222 223345555555532 2346666
Q ss_pred ---CCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcC----CcCCCCCcC-C
Q 002097 548 ---CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI----SGSLPSCFY-P 619 (967)
Q Consensus 548 ---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~-~ 619 (967)
|++|+.++|.+ .++.+.+.+|.+|++|+.+++.+|.+..+.+.+|.++.++..+....+.. .......+. +
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 88999999988 77766677888899999999998888777888888888777777665322 111111121 3
Q ss_pred Cccc-EEEccCCcCcccCCcccc---cCCCCCcEEECcCccCCCCcchhh-hCCCCCCEEEcCCCcCcccCChhccCCCC
Q 002097 620 LSIK-QVHLSKNMLHGQLKEGTF---FNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 694 (967)
Q Consensus 620 ~~L~-~L~l~~n~~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 694 (967)
..|+ .+.+.... .++...+ ....+++.+.+.++-.. .....+ ..+++|+.++|++|+++...+.+|.++++
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 3443 23332211 1111111 12345556665554211 111222 24788999999999888777778899999
Q ss_pred CCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccc-
Q 002097 695 LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA- 773 (967)
Q Consensus 695 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~- 773 (967)
|+.+++.+| ++.+.+.+|.++. +|+
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~-----------------------------------------------------~L~~ 277 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCG-----------------------------------------------------RLAG 277 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCT-----------------------------------------------------TCCE
T ss_pred CCEEECCcc-cceehHHHhhCCh-----------------------------------------------------hccE
Confidence 999999887 7777777787754 788
Q ss_pred eEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEEC
Q 002097 774 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 825 (967)
Q Consensus 774 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 825 (967)
.+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 889988 777667788999999999999999999888889999999998864
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=5.7e-16 Score=154.30 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=89.2
Q ss_pred CCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccce
Q 002097 451 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 530 (967)
Q Consensus 451 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 530 (967)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 345666666666655 333 4556666666666666554 333 2 2336666666666666665556666666666666
Q ss_pred eccCccccccCCccCcCCCCCcEEECcCCc-CCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcC
Q 002097 531 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNN-LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 609 (967)
Q Consensus 531 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 609 (967)
++++|.+++..|..+..+++|++|++++|+ ++ .+| .+..+++|++|++++|++++.. .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 666666665555566666666666666666 43 333 4666666666666666665422 556666666666666665
Q ss_pred C
Q 002097 610 S 610 (967)
Q Consensus 610 ~ 610 (967)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=6e-17 Score=187.59 Aligned_cols=153 Identities=21% Similarity=0.176 Sum_probs=111.9
Q ss_pred ccccccccccCCcccccee-ccCc-------------cccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEE
Q 002097 513 LKGHIFSRIFSLRNLRWLL-LEGN-------------HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 578 (967)
Q Consensus 513 l~~~~~~~~~~l~~L~~L~-L~~n-------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 578 (967)
..+..|..+..+++|+.|+ ++.| .++...+ ..|+.|++++|.+++ +|. ++.+++|+.|
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L 468 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHL 468 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEE
T ss_pred cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEe
Confidence 3445566666666777666 4444 3332211 248888888888885 565 8888888888
Q ss_pred ECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCC
Q 002097 579 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 658 (967)
Q Consensus 579 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 658 (967)
++++|+++ .+|..++++++|+.|+|++|.+++ +| .+..+++|+.|+|++|+++
T Consensus 469 ~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~------------------------lp--~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALEN------------------------VD--GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC------------------------CG--GGTTCSSCCEEECCSSCCC
T ss_pred ecCccccc-ccchhhhcCCCCCEEECCCCCCCC------------------------Cc--ccCCCCCCcEEECCCCCCC
Confidence 88888887 667788888888888888888763 22 4677888888888888888
Q ss_pred CCc-chhhhCCCCCCEEEcCCCcCcccCCh---hccCCCCCCEEEC
Q 002097 659 GSI-PDWIDGLSQLSHLNLAHNNLEGEVPI---QLCRLNQLQLLDL 700 (967)
Q Consensus 659 ~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L 700 (967)
+.. |..++.+++|+.|+|++|++++..|. .+..+++|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 776 88888888888888888888866542 2345788888864
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=148.85 Aligned_cols=89 Identities=29% Similarity=0.305 Sum_probs=71.3
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
+|+.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.++++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 56667777777776666678888888888888888888878888888888888888888886666678888888888888
Q ss_pred CCcCccCCC
Q 002097 851 YNNLSGKIP 859 (967)
Q Consensus 851 ~N~l~~~~p 859 (967)
+|++.|.+.
T Consensus 135 ~N~~~C~c~ 143 (193)
T 2wfh_A 135 ANPLYCDCN 143 (193)
T ss_dssp SSCEECSGG
T ss_pred CCCeecCCc
Confidence 888887665
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=3.8e-14 Score=156.71 Aligned_cols=77 Identities=13% Similarity=0.244 Sum_probs=37.6
Q ss_pred ccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcC
Q 002097 527 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 606 (967)
Q Consensus 527 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 606 (967)
|+.+.+.. .+..+-+.+|.+|++|+.+++.+|.++......|. +.+|+.+.+..+ +..+...+|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44444443 23333344555555555555555555533333333 355555555532 4444455555555555555554
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=4e-14 Score=156.56 Aligned_cols=241 Identities=17% Similarity=0.213 Sum_probs=154.7
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccC
Q 002097 550 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 629 (967)
Q Consensus 550 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 629 (967)
+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+.+.+|.+|++|+.++++.|.+.......|...+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 3444444433 332333344442 355555543 3333444455555555555555555554444444455555555553
Q ss_pred CcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCc---
Q 002097 630 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH--- 706 (967)
Q Consensus 630 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--- 706 (967)
+ + ..++..+|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++.....+|.++++|+.+++.+|.+.
T Consensus 213 ~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 213 T-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp T-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred c-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 3 2 3566668888888888888874 55556677777 788888884 4566566778888889999988887664
Q ss_pred --ccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccC
Q 002097 707 --GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 784 (967)
Q Consensus 707 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 784 (967)
.+.+.+|.++. +|+.++|. +.++.
T Consensus 288 ~~~I~~~aF~~c~-----------------------------------------------------~L~~l~l~-~~i~~ 313 (401)
T 4fdw_A 288 EAMIHPYCLEGCP-----------------------------------------------------KLARFEIP-ESIRI 313 (401)
T ss_dssp TCEECTTTTTTCT-----------------------------------------------------TCCEECCC-TTCCE
T ss_pred ccEECHHHhhCCc-----------------------------------------------------cCCeEEeC-CceEE
Confidence 34444554433 78888887 44665
Q ss_pred CCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCC-CcCCeEecCCCcC
Q 002097 785 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYNNL 854 (967)
Q Consensus 785 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~ls~N~l 854 (967)
+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|..+ ..+..+++..+.+
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 66677888888888888554 776777888888 88888888888876666667666 3667777766553
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.5e-16 Score=188.44 Aligned_cols=224 Identities=21% Similarity=0.143 Sum_probs=98.1
Q ss_pred ccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeC
Q 002097 525 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 604 (967)
Q Consensus 525 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 604 (967)
+.++.|+|.+|.+... +.. .++.++|+.|.+.+. ++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~--------------~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDED--------------DDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCc--------------ccccccee-cChhhhccCCCCcEEEC
Confidence 4567777777776642 222 234444444443321 22223332 33444555555555555
Q ss_pred cCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCccc
Q 002097 605 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 684 (967)
Q Consensus 605 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 684 (967)
++|.+....+..+.+++|+.|+|++|.+. .+|. .|..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 55555422222333445555555555554 5554 6788888999999999988 67888888999999999999887 6
Q ss_pred CChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeecccccccc
Q 002097 685 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 764 (967)
Q Consensus 685 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (967)
+|..|+.+++|++|+|++|++++.+|..+....
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~----------------------------------------------- 340 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS----------------------------------------------- 340 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH-----------------------------------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcc-----------------------------------------------
Confidence 777888899999999999998888877665422
Q ss_pred chhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCc--------cccccCcccccCCCCCCEEECcCCcCc
Q 002097 765 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN--------NLTGTIPLTFSNLRHIESLDLSYNKLS 831 (967)
Q Consensus 765 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 831 (967)
.....++|++|.+++.+|.. |+.|++++| .+.+..+..+..+..++...+++|-+.
T Consensus 341 -----~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 341 -----VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----HHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred -----hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 01224677788888777753 455666666 444444455556666666777777664
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.1e-15 Score=146.00 Aligned_cols=85 Identities=24% Similarity=0.208 Sum_probs=45.2
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCc-ccccCCCCCCEEECcCCcCcccCC---ccccCCCcCCe
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIP---RQLVDLNTLAI 846 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~ 846 (967)
+|++|++++|.+++.+|..+..+++|+.|+|++|.+++..+ ..++.+++|+.|++++|++++..+ ..+..+++|++
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 44555555555554444444455555555555555554321 455555556666666665554433 34555556666
Q ss_pred EecCCCcCc
Q 002097 847 FIVAYNNLS 855 (967)
Q Consensus 847 l~ls~N~l~ 855 (967)
|++++|.+.
T Consensus 152 L~l~~n~~~ 160 (168)
T 2ell_A 152 LDGYDREDQ 160 (168)
T ss_dssp ETTEETTSC
T ss_pred ecCCCCChh
Confidence 666665554
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=4.5e-14 Score=157.31 Aligned_cols=324 Identities=14% Similarity=0.130 Sum_probs=184.7
Q ss_pred cCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccc
Q 002097 450 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 529 (967)
Q Consensus 450 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 529 (967)
.+.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+ +......+|.++..++.
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 3444444444322 33333445555555555555433 33 455555555555555544433 22233444444433322
Q ss_pred eeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcC
Q 002097 530 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 609 (967)
Q Consensus 530 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 609 (967)
....... ..-..+|.++++|+.+.+.++.. .+...+|.++++|+.+.+..+ +..+....|.++..|+.+.+..+..
T Consensus 145 ~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 145 TIPEGVT--VIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp ECCTTCC--EECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccCcccc--ccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 2222221 12334677777777777765432 244556777777777777665 4445566677777777777665543
Q ss_pred CcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhc
Q 002097 610 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 689 (967)
Q Consensus 610 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 689 (967)
. .....+...+|+.+.+.... ..+....|.++..++.+.+..+... .....|..+..++.+....+.+. ...|
T Consensus 221 ~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F 293 (394)
T 4fs7_A 221 Y-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTF 293 (394)
T ss_dssp E-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTT
T ss_pred E-eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccc
Confidence 2 22233445566766665432 2344557777888888887766443 45566777777887777665432 3456
Q ss_pred cCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhh
Q 002097 690 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 769 (967)
Q Consensus 690 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 769 (967)
..+.+|+.+.+.++ ++.+...+|.++.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~---------------------------------------------------- 320 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCT---------------------------------------------------- 320 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCT----------------------------------------------------
T ss_pred cccccccccccccc-cceechhhhcCCC----------------------------------------------------
Confidence 67777877777654 4444455555433
Q ss_pred cccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCe
Q 002097 770 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 846 (967)
Q Consensus 770 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 846 (967)
+|+.++|..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+- . .+...|.+.++|+.
T Consensus 321 -~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 321 -SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp -TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred -CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 6777777543 55445566777777777777766 665666777777777777776542 2 23345555555543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.1e-14 Score=142.19 Aligned_cols=90 Identities=23% Similarity=0.250 Sum_probs=71.4
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
+|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|+.+++|++|++++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 67777777777776666667788888888888888887777778888888888888888886666666778888888888
Q ss_pred CCcCccCCCC
Q 002097 851 YNNLSGKIPE 860 (967)
Q Consensus 851 ~N~l~~~~p~ 860 (967)
+|+++|.+|.
T Consensus 133 ~N~~~~~~~~ 142 (177)
T 2o6r_A 133 TNPWDCSCPR 142 (177)
T ss_dssp SSCBCCCHHH
T ss_pred CCCeeccCcc
Confidence 8888887763
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=9.9e-15 Score=144.23 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=106.4
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
.+++|+|++|.++ .+|..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 6899999999998 788899999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCcCccCCCCCcccccccCcccccCCcCCCCCCCCC
Q 002097 851 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 886 (967)
Q Consensus 851 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l~~ 886 (967)
+|.+++..+..+..+..+....+.+||+.|+|++.|
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence 999997776666778888999999999999987543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5e-15 Score=143.32 Aligned_cols=139 Identities=24% Similarity=0.254 Sum_probs=120.0
Q ss_pred CCCCCcEEECcCccCC-CCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccc
Q 002097 643 NCSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES 721 (967)
Q Consensus 643 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 721 (967)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 3478999999999998 67888889999999999999999865 78899999999999999998876655543
Q ss_pred cCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCC-cccccCCCCCCEEE
Q 002097 722 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI-PPQIGNLTRIQTLN 800 (967)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ 800 (967)
+++|++|++++|.+++.. +..+..+++|+.|+
T Consensus 94 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 94 -----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp -----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred -----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 348999999999998642 27899999999999
Q ss_pred CcCccccccCc---ccccCCCCCCEEECcCCcCcccCCcc
Q 002097 801 LSHNNLTGTIP---LTFSNLRHIESLDLSYNKLSGKIPRQ 837 (967)
Q Consensus 801 Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~ 837 (967)
+++|.+++..+ ..+..+++|+.||+++|.+. .+|.+
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999997766 58999999999999999987 55543
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=3.9e-16 Score=186.76 Aligned_cols=144 Identities=29% Similarity=0.308 Sum_probs=96.7
Q ss_pred CCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCc
Q 002097 467 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 546 (967)
Q Consensus 467 ~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 546 (967)
..+..|..++.|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 45667777777888888888877 77777663 777777777777777 56677777777777777777777 5677777
Q ss_pred CCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCC-CCEEeCcCCcCCcCCCC
Q 002097 547 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDISDNNISGSLPS 615 (967)
Q Consensus 547 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~ 615 (967)
++++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 7777777777777776 56666777777777777777777666666544321 22356677777666554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=5e-15 Score=140.08 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=51.5
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCcccccc-CcccccCCCCCCEEECcCCcCcccCC---ccccCCCcCCe
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIP---RQLVDLNTLAI 846 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~ 846 (967)
+|++|++++|.+++.+|..+..+++|+.|++++|.+++. .|..++.+++|++|++++|++++..+ ..+..+++|++
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 566666666666655666666666677777777776653 33566667777777777777765554 45666677777
Q ss_pred EecC
Q 002097 847 FIVA 850 (967)
Q Consensus 847 l~ls 850 (967)
|+++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 6665
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=3.8e-15 Score=140.94 Aligned_cols=129 Identities=26% Similarity=0.282 Sum_probs=100.5
Q ss_pred CCCCcEEECcCccCC-CCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccccccccccc
Q 002097 644 CSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 722 (967)
Q Consensus 644 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 722 (967)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 367788888888887 66777777888888888888888755 66778888888888888887765554433
Q ss_pred CCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCC-CcccccCCCCCCEEEC
Q 002097 723 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQTLNL 801 (967)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L 801 (967)
+++|++|++++|.+++. .+..+..+++|+.|++
T Consensus 87 ----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 87 ----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 33788888888888753 3477888999999999
Q ss_pred cCccccccCc---ccccCCCCCCEEECcC
Q 002097 802 SHNNLTGTIP---LTFSNLRHIESLDLSY 827 (967)
Q Consensus 802 s~N~l~~~~p---~~~~~l~~L~~L~Ls~ 827 (967)
++|.+++..+ ..++.+++|+.||+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999987766 5788899999998874
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=3.3e-14 Score=138.85 Aligned_cols=133 Identities=27% Similarity=0.277 Sum_probs=108.2
Q ss_pred CcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCC
Q 002097 647 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 726 (967)
Q Consensus 647 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 726 (967)
.+.+++++++++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT--------- 76 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence 4567777777773 44322 36788888888888876666778888899999999888877766665533
Q ss_pred CCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccc
Q 002097 727 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 806 (967)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 806 (967)
+|++|++++|++++..+..|..+++|+.|++++|.+
T Consensus 77 --------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 77 --------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 789999999999977777789999999999999999
Q ss_pred cccCcccccCCCCCCEEECcCCcCcccCC
Q 002097 807 TGTIPLTFSNLRHIESLDLSYNKLSGKIP 835 (967)
Q Consensus 807 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 835 (967)
++..+..|..+++|+.|++++|++.+..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 98877788999999999999999998665
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.7e-13 Score=152.59 Aligned_cols=327 Identities=14% Similarity=0.172 Sum_probs=168.2
Q ss_pred hhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCC
Q 002097 399 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 478 (967)
Q Consensus 399 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 478 (967)
|.+|++|+.+.+..+ ++.....+|..+++|+.+++..+ +. .++...+..+++|+.+.+..+ +......+|.++..+
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 445555555555422 44344445555555555555433 22 344444444555555444433 222333444444332
Q ss_pred CEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcC
Q 002097 479 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 558 (967)
Q Consensus 479 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 558 (967)
+..... ... .+....|..+.+|+.+.+..+. .......|.++.+|+.+.+..+ +......+|.++..|+.+.+..
T Consensus 143 ~~~~~~--~~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 143 EITIPE--GVT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EEECCT--TCC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCc--ccc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 222211 112 3444555556666666665432 2244455556666666666554 3334444556666666655554
Q ss_pred CcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCc
Q 002097 559 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 638 (967)
Q Consensus 559 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 638 (967)
+... +.+.......|+.+.+... +..+....|.++..|+.+.+..+.. .+..
T Consensus 218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-------------------------~i~~ 269 (394)
T 4fs7_A 218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-------------------------RIGG 269 (394)
T ss_dssp TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-------------------------EECS
T ss_pred CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-------------------------eeec
Confidence 4321 2223333455666555432 2223344555555666555544432 2333
Q ss_pred ccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccccccc
Q 002097 639 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 718 (967)
Q Consensus 639 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 718 (967)
..|..+..++.+....+.+. ...|.++.+|+.+.+.++ ++.....+|.++.+|+.++|.++ ++.+...+|.+++
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~- 343 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT- 343 (394)
T ss_dssp CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT-
T ss_pred cccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC-
Confidence 35566666666655544322 244566666666666544 44344555666677777766543 4444455555433
Q ss_pred ccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCE
Q 002097 719 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 798 (967)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 798 (967)
+|+.+++..+ ++.+...+|.++++|+.
T Consensus 344 ----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 344 ----------------------------------------------------SLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp ----------------------------------------------------TCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred ----------------------------------------------------CCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 5666666655 55455567888888888
Q ss_pred EECcCccccccCcccccCCCCCCEE
Q 002097 799 LNLSHNNLTGTIPLTFSNLRHIESL 823 (967)
Q Consensus 799 L~Ls~N~l~~~~p~~~~~l~~L~~L 823 (967)
+++..+ ++ .+..+|.+.++|+.+
T Consensus 371 i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 371 VELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEECCC-CE-EhhheecCCCCCcEE
Confidence 888655 33 345677777777654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.2e-14 Score=135.39 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=36.8
Q ss_pred cccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCccc
Q 002097 640 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 708 (967)
Q Consensus 640 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 708 (967)
.+.++++|+.|++++|+++. +|......++|++|++++|++++. ..+..+++|++|++++|.+++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc
Confidence 35556667777777776663 343222233666666666666643 3455555555555555555443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.2e-15 Score=151.96 Aligned_cols=156 Identities=24% Similarity=0.281 Sum_probs=120.0
Q ss_pred ccCCCCCcEEECcCccCCCCcch------hhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccc
Q 002097 641 FFNCSSLVTLDLSYNYLNGSIPD------WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 714 (967)
Q Consensus 641 ~~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 714 (967)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++. +|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhh
Confidence 34445666677777777766665 88889999999999999886 66 78888999999999998873 333332
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCC
Q 002097 715 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 794 (967)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 794 (967)
. +++|++|++++|++++ +| .+..++
T Consensus 91 ~-----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 91 V-----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp H-----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred c-----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCC
Confidence 2 3478999999999985 44 688889
Q ss_pred CCCEEECcCccccccCc-ccccCCCCCCEEECcCCcCcccCCcc----------ccCCCcCCeEecCCCcCcc
Q 002097 795 RIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQ----------LVDLNTLAIFIVAYNNLSG 856 (967)
Q Consensus 795 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~l~ls~N~l~~ 856 (967)
+|+.|++++|.+++..+ ..+..+++|++|++++|++++.+|.. +..++.|++|| +|+++.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999999999986543 57888999999999999998776653 77888888886 666653
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=5.1e-13 Score=128.91 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=84.9
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
.+++|+|++|.+++..|..|..+++|+.|+|++|+|++..+..|+.+++|+.|+|++|++++..|..+..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 78999999999998889999999999999999999999888899999999999999999998777789999999999999
Q ss_pred CCcCccCCCC
Q 002097 851 YNNLSGKIPE 860 (967)
Q Consensus 851 ~N~l~~~~p~ 860 (967)
+|+++|.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999998874
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.8e-13 Score=131.93 Aligned_cols=134 Identities=17% Similarity=0.183 Sum_probs=109.0
Q ss_pred hhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCc
Q 002097 665 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS 744 (967)
Q Consensus 665 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (967)
+..+++|++|++++|+++. +|......++|++|++++|.+++. ..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~----------------------------- 62 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPL----------------------------- 62 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCC-----------------------------
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccccc-----------------------------
Confidence 5667899999999999984 454334345999999999999875 34443
Q ss_pred hhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcc--cccCCCCCCE
Q 002097 745 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL--TFSNLRHIES 822 (967)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~ 822 (967)
+++|++|++++|.+++..|..|..+++|+.|+|++|.++. +|. .++.+++|+.
T Consensus 63 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 63 ------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTY 117 (176)
T ss_dssp ------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCE
T ss_pred ------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCE
Confidence 3489999999999996655556899999999999999974 555 8889999999
Q ss_pred EECcCCcCcccCCcc----ccCCCcCCeEecCCCcCcc
Q 002097 823 LDLSYNKLSGKIPRQ----LVDLNTLAIFIVAYNNLSG 856 (967)
Q Consensus 823 L~Ls~N~l~~~~p~~----l~~l~~L~~l~ls~N~l~~ 856 (967)
|++++|+++ .+|.. +..++.|++||+++|....
T Consensus 118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999998 55654 8899999999999998664
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.8e-12 Score=125.41 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=83.7
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
.|++|+|++|.+++..|..|..+++|+.|+|++|+|++..+..|+.+++|+.|||++|++++..+..+..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 79999999999998889999999999999999999998888889999999999999999997777779999999999999
Q ss_pred CCcCccCCCC
Q 002097 851 YNNLSGKIPE 860 (967)
Q Consensus 851 ~N~l~~~~p~ 860 (967)
+|++.+.++.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999987764
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.5e-12 Score=125.63 Aligned_cols=110 Identities=24% Similarity=0.252 Sum_probs=100.0
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
..+++++++|.++ .+|..+. ++|+.|+|++|++++..|..|+.+++|++|||++|++++..|..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999999 5777664 899999999999999999999999999999999999998888888999999999999
Q ss_pred CCcCccCCCCCcccccccCcccccCCcCCCCCC
Q 002097 851 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 883 (967)
Q Consensus 851 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~ 883 (967)
+|++++..|..+..+..+....+.+||+.|.|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998777767788899999999999999885
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=4.4e-11 Score=133.07 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=68.2
Q ss_pred CcEEECcCCCCCCCCcccccCCCCCCEEEccCCc---CCCccchhHhhcCCCCcEEEcccccccccccccccCCccccce
Q 002097 454 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK---LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 530 (967)
Q Consensus 454 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 530 (967)
|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++ .+....|..+.+|+.+.+..+ +......+|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 444444332 333334455555555555554432 33 444455555555555444332 333334445555555555
Q ss_pred eccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCC
Q 002097 531 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 607 (967)
Q Consensus 531 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 607 (967)
.+..+. ......+|..+..|+.+.+.++ ++.+...+|. ...|+.+.+..+-. .....+|.++.+++......+
T Consensus 143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCS
T ss_pred ccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceeccccc
Confidence 554332 2233345555666666665543 2222233343 24566666554322 233445556666665554443
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=9.7e-11 Score=130.23 Aligned_cols=226 Identities=10% Similarity=0.106 Sum_probs=98.6
Q ss_pred cccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCC
Q 002097 469 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 548 (967)
Q Consensus 469 ~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 548 (967)
..+|.++.+|+.+.+..+ ++ .++...|..+.+|+.+.+..+ +.......|..+..|+.+.+.++ +..+-..+|.+
T Consensus 107 ~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~- 181 (394)
T 4gt6_A 107 RQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG- 181 (394)
T ss_dssp TTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-
T ss_pred hhhchhcccceeeccCCc-cc-eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-
Confidence 344555555555444433 22 444445555555555555432 22233444555555555555443 22233334433
Q ss_pred CCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEcc
Q 002097 549 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 628 (967)
Q Consensus 549 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 628 (967)
..|+.+.+..+... ....+|.++..++......+.........+............. + ....+..+.+.
T Consensus 182 ~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~ip 250 (394)
T 4gt6_A 182 TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-------P---SQREDPAFKIP 250 (394)
T ss_dssp CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-------C---TTCCCSEEECC
T ss_pred cceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccccccc-------c---cccccceEEcC
Confidence 45666665543322 3445566666666665544433211111111111000000000 0 00111111111
Q ss_pred CCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCccc
Q 002097 629 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 708 (967)
Q Consensus 629 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 708 (967)
.. + ..+...+|.+|..|+.+.+..+... ....+|.++++|+.+.+. +.++.....+|.++.+|+.++|.++ ++.+
T Consensus 251 ~~-v-~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I 325 (394)
T 4gt6_A 251 NG-V-ARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQI 325 (394)
T ss_dssp TT-E-EEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred Cc-c-eEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEe
Confidence 10 0 1233336666677776666554322 344556666666666664 2344344455666666666666543 3333
Q ss_pred CCCcccc
Q 002097 709 IPSCFDN 715 (967)
Q Consensus 709 ~~~~~~~ 715 (967)
...+|.+
T Consensus 326 ~~~aF~~ 332 (394)
T 4gt6_A 326 LDDAFAG 332 (394)
T ss_dssp CTTTTTT
T ss_pred hHhHhhC
Confidence 3334433
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=4.2e-12 Score=122.85 Aligned_cols=109 Identities=21% Similarity=0.229 Sum_probs=98.2
Q ss_pred cceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCC
Q 002097 772 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAY 851 (967)
Q Consensus 772 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 851 (967)
-+.+++++|.++ .+|..+. ++|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..+..+..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 468999999997 6787765 8999999999999999999999999999999999999987777789999999999999
Q ss_pred CcCccCCCCCcccccccCcccccCCcCCCCCC
Q 002097 852 NNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 883 (967)
Q Consensus 852 N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~ 883 (967)
|++++..+..+..+..+....+.+|++.|.|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99998776657788899999999999999875
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=1.6e-14 Score=143.96 Aligned_cols=154 Identities=27% Similarity=0.243 Sum_probs=98.1
Q ss_pred cCCccccceeccCccccccCCc------cCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccC
Q 002097 522 FSLRNLRWLLLEGNHFVGEIPQ------SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 595 (967)
Q Consensus 522 ~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 595 (967)
.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445566666666666655554 45555666666666666653 44 5555566666666666555 34444444
Q ss_pred CCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcc-hhhhCCCCCCEE
Q 002097 596 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHL 674 (967)
Q Consensus 596 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 674 (967)
+++|+.|++++|.++ + ++ .+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus 92 ~~~L~~L~L~~N~l~-----------------------~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 92 ADTLEELWISYNQIA-----------------------S-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHHCSEEEEEEEECC-----------------------C-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCcCCEEECcCCcCC-----------------------c-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 555555555555554 2 22 45667788888888888875433 467888899999
Q ss_pred EcCCCcCcccCCh----------hccCCCCCCEEECCCCcCc
Q 002097 675 NLAHNNLEGEVPI----------QLCRLNQLQLLDLSDNNLH 706 (967)
Q Consensus 675 ~L~~n~l~~~~~~----------~~~~l~~L~~L~Ls~n~l~ 706 (967)
++++|++.+..|. .+..+++|+.|| +|.++
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9999988766554 277889999887 66554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.5e-11 Score=134.47 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=90.5
Q ss_pred ccceEECCC-CcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEec
Q 002097 771 LLAGLDLSC-NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 849 (967)
Q Consensus 771 ~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 849 (967)
+|+.|+|++ |.+++..|..|.++++|+.|+|++|+|++.+|..|+.+++|+.|||++|+|++..|..+..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 799999996 999988888999999999999999999999999999999999999999999977666776666 999999
Q ss_pred CCCcCccCCCCCccccccc---CcccccCCcCCCCCC
Q 002097 850 AYNNLSGKIPEWTAQFATF---NKSSYDGNPFLCGLP 883 (967)
Q Consensus 850 s~N~l~~~~p~~~~~~~~~---~~~~~~~n~~lc~~~ 883 (967)
++|++.|.++. .+|..+ ....+..+...|..|
T Consensus 111 ~~N~~~c~c~l--~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 111 SGNPLHCSCAL--RWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCCCCGGG--HHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eCCCccCCCcc--HHHHHHHHhCcccccccCCCCCCC
Confidence 99999987662 233322 222334566677554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=1.7e-12 Score=142.02 Aligned_cols=164 Identities=21% Similarity=0.212 Sum_probs=109.7
Q ss_pred CCCcEEECcCccCCCCcchhhhC-----CCCCCEEEcCCCcCcccCChhc-cCCCCCCEEECCCCcCcccCCCccccccc
Q 002097 645 SSLVTLDLSYNYLNGSIPDWIDG-----LSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTTL 718 (967)
Q Consensus 645 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 718 (967)
+.|+.|+|++|.++......+.. .++|++|+|++|.++......+ ..+++|+.|+|++|.++......+...-
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L- 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL- 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH-
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH-
Confidence 56778888888877544333332 2678888888888764433333 2356788888888877644322221100
Q ss_pred ccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCC----CcccccCCC
Q 002097 719 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH----IPPQIGNLT 794 (967)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~ 794 (967)
....+.|++|+|++|.++.. ++..+..++
T Consensus 151 -----------------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 183 (372)
T 3un9_A 151 -----------------------------------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183 (372)
T ss_dssp -----------------------------------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS
T ss_pred -----------------------------------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC
Confidence 00123688888888888642 344457788
Q ss_pred CCCEEECcCcccccc----CcccccCCCCCCEEECcCCcCccc----CCccccCCCcCCeEecCCCcCcc
Q 002097 795 RIQTLNLSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSG 856 (967)
Q Consensus 795 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~l~ls~N~l~~ 856 (967)
+|++|+|++|.+++. ++..+...++|+.|||++|.++.. ++..+...++|++|++++|+++.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 899999999988753 356677778899999999988753 34455567889999999998874
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=7.3e-11 Score=129.03 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=97.0
Q ss_pred ceEECCCC-cccCCCcccccCCCCCCEEECcC-ccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002097 773 AGLDLSCN-KLVGHIPPQIGNLTRIQTLNLSH-NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 773 ~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
..++.+++ .++ .+|. +..+++|+.|+|++ |.|++..|..|+.+++|+.|||++|+|++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45789998 898 5888 99999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCcccccccCcccccCCcCCCCCCC
Q 002097 851 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 884 (967)
Q Consensus 851 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l 884 (967)
+|+|++..|..+..+. +....+.+|++.|.|++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999976666544333 78888999999999874
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=5.5e-12 Score=137.95 Aligned_cols=195 Identities=18% Similarity=0.202 Sum_probs=93.0
Q ss_pred CCCCEEECCCCcCCCCCChhhhcC-----CCCCCEEEcCCCCCCccccccCccCCCCccEEECCCCCCCCCc--hhhhhc
Q 002097 46 SSLTSLHLSHNILQGSIDAKEFDS-----LSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN--KLLQSM 118 (967)
Q Consensus 46 ~~L~~L~L~~~~i~~~i~~~~~~~-----l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~~~l~~~~--~~~~~l 118 (967)
++|++|+|++|.++ ......+.. .++|++|+|++|.+.+.........+++|++|+|++|.+.+.+ .+...+
T Consensus 72 ~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45666666666655 222222221 2456666666666654433222234455666666666653211 111222
Q ss_pred -CCCCcccEEeccCCcccccc--ccchhhcCCCCCcEEEcCCCCCchhhhhhhhcccccchhhcccCcccccccCCCCCC
Q 002097 119 -GSFPSLNTLHLESNNFTATL--TTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 195 (967)
Q Consensus 119 -~~l~~L~~L~L~~n~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~ 195 (967)
...++|++|+|++|.+.... .....+...++|++|++++|.+++.....+.. .+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~----------------------~L~ 208 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA----------------------QLD 208 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH----------------------HGG
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH----------------------HHh
Confidence 23556666666666654321 11223455666777777766665544333322 233
Q ss_pred Cccccceecccccccccccchh----hhhhcccCcccEEecCCCCCCCCCCcccccCCCCCC--CCcEEE--ccCCcccc
Q 002097 196 HFKSLEHLDMRFARIALNTSFL----QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA--HLQELY--IDNNDLRG 267 (967)
Q Consensus 196 ~l~~L~~L~L~~~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~--~L~~L~--L~~n~l~~ 267 (967)
..++|++|+| ++|.+.+... ..+.. .+.|++|+|++|.++..+...... +.... .|+.+. +..+.+..
T Consensus 209 ~~~~L~~L~L--s~N~i~~~g~~~l~~~L~~-~~~L~~L~Ls~N~i~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 209 RNRQLQELNV--AYNGAGDTAALALARAARE-HPSLELLHLYFNELSSEGRQVLRD-LGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp GCSCCCEEEC--CSSCCCHHHHHHHHHHHHH-CSSCCEEECTTSSCCHHHHHHHHH-CC------CEEECCCC----CHH
T ss_pred cCCCcCeEEC--CCCCCCHHHHHHHHHHHHh-CCCCCEEeccCCCCCHHHHHHHHH-HhcCCCccchhhHhhhcCCccCH
Confidence 3445666666 4555544322 22333 577888888888876522111111 11112 267776 66665543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=9.3e-09 Score=113.70 Aligned_cols=144 Identities=10% Similarity=0.112 Sum_probs=84.4
Q ss_pred cccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccc
Q 002097 640 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 719 (967)
Q Consensus 640 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 719 (967)
.+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +..+...+|.++.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-- 286 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-- 286 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT--
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc--
Confidence 4555666666666543 33234455666666666666654 44344555666666777666543 3333334444432
Q ss_pred cccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEE
Q 002097 720 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 799 (967)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 799 (967)
+|+.+++.++.++.+...+|.++.+|+.+
T Consensus 287 ---------------------------------------------------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 287 ---------------------------------------------------NLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp ---------------------------------------------------TCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ---------------------------------------------------ccccccccccccceehhhhhcCCCCCCEE
Confidence 66677776666665555667777777777
Q ss_pred ECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCC
Q 002097 800 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 841 (967)
Q Consensus 800 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 841 (967)
+|..+ ++.+-..+|.++++|+.+.+..+ ++.+-..+|.+.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 77644 55555667777777777777544 443334444443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2e-08 Score=110.96 Aligned_cols=297 Identities=10% Similarity=0.056 Sum_probs=174.4
Q ss_pred CCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCcccccee
Q 002097 452 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 531 (967)
Q Consensus 452 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 531 (967)
.+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .|+...|.++ +|+.+.+.
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~---------------------- 99 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGM---------------------- 99 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEEC----------------------
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECC----------------------
Confidence 3555555543 233344445555555555555432 43 4555555433 34444333
Q ss_pred ccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCc
Q 002097 532 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 611 (967)
Q Consensus 532 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 611 (967)
.+ +...-..+|..+ +|+.+.+..+. .......|.++ +++...+..+ ++.+....|..+..++.+.+..+....
T Consensus 100 --~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~ 172 (379)
T 4h09_A 100 --ER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNY 172 (379)
T ss_dssp --TT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSE
T ss_pred --ce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhccccccccccccccccee
Confidence 22 221222334433 56666665432 21223334333 4555554433 233445566667777776665544321
Q ss_pred CCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccC
Q 002097 612 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR 691 (967)
Q Consensus 612 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 691 (967)
......... .. ... ...+..+..+..+.+....- ......+..+.+|+.+.+..+ +.......+.+
T Consensus 173 ~~~~~~~~~--------~~---~~~-~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~ 238 (379)
T 4h09_A 173 VAENYVLYN--------KN---KTI-LESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYG 238 (379)
T ss_dssp EEETTEEEE--------TT---SSE-EEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTT
T ss_pred ecccceecc--------cc---cce-ecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccC
Confidence 111100000 00 001 11455566677766655432 244567778889999998766 44355667888
Q ss_pred CCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcc
Q 002097 692 LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL 771 (967)
Q Consensus 692 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 771 (967)
+..|+.+.+..+ ++.+...+|.+.. .
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~-----------------------------------------------------~ 264 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCT-----------------------------------------------------A 264 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCT-----------------------------------------------------T
T ss_pred CccceEEEcCCC-ccEeCccccceee-----------------------------------------------------h
Confidence 999999998765 5555555555433 6
Q ss_pred cceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCC
Q 002097 772 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAY 851 (967)
Q Consensus 772 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 851 (967)
|+.+++..+ +.......|.++++|+.+++.++.++.+.+.+|.++++|+.++|..+ ++.+-..+|.++++|+.+.+..
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 777887654 54455567999999999999999999888899999999999999865 6656667888989998876643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=4.2e-08 Score=106.07 Aligned_cols=188 Identities=15% Similarity=0.232 Sum_probs=105.5
Q ss_pred hhhhcCCCCCCEEECCCCcCCC--------CCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCccEEECCCCCCCC
Q 002097 39 LSSVARLSSLTSLHLSHNILQG--------SIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 110 (967)
Q Consensus 39 ~~~l~~l~~L~~L~L~~~~i~~--------~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~~~l~~ 110 (967)
..++.++++|+.|.+....... .-....+..+++|+.|+|++|.-.... .+ .+++|++|++..+.+
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~---~~-~~~~L~~L~L~~~~l-- 205 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG---KK-PRPNLKSLEIISGGL-- 205 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC---SC-BCTTCSEEEEECSBC--
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec---cc-cCCCCcEEEEecCCC--
Confidence 3445566777777765543210 011234577788888888776311111 23 377888888887776
Q ss_pred CchhhhhcC--CCCcccEEeccC--Ccccccc---ccchhh--cCCCCCcEEEcCCCCCchhhhhhhhcccccchhhccc
Q 002097 111 GNKLLQSMG--SFPSLNTLHLES--NNFTATL---TTTQEL--HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMS 181 (967)
Q Consensus 111 ~~~~~~~l~--~l~~L~~L~L~~--n~~~~~~---~~~~~l--~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~l~~l~~~ 181 (967)
.......+. .+++|++|+|+. +...+.. .....+ ..+|+|++|++.+|.+.+.....+..
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~----------- 274 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE----------- 274 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-----------
T ss_pred ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-----------
Confidence 333333333 678888888753 1211111 011122 34788999998888876544333221
Q ss_pred CcccccccCCCCCCCccccceecccccccccccchhhh----hhcccCcccEEecCCCCCCCCCCcccccCCCC-CCCCc
Q 002097 182 GCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQI----IGESMPSLKYLSLSGSTLGTNSSRILDQGLCP-LAHLQ 256 (967)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~----~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~-l~~L~ 256 (967)
...+++|++|+| +.|.+.+..... +.. +++|+.|+++.|.++. ... .++.. + ..
T Consensus 275 ------------a~~~~~L~~LdL--s~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i~d---~~~-~~l~~al--g~ 333 (362)
T 2ra8_A 275 ------------SDILPQLETMDI--SAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYLSD---EMK-KELQKSL--PM 333 (362)
T ss_dssp ------------CSSGGGCSEEEC--CSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBCCH---HHH-HHHHHHC--CS
T ss_pred ------------CccCCCCCEEEC--CCCCCChHHHHHHHhhccc-CCcceEEECCCCcCCH---HHH-HHHHHHc--CC
Confidence 123577888888 556665543322 233 7889999998888764 111 11211 1 35
Q ss_pred EEEccCCc
Q 002097 257 ELYIDNND 264 (967)
Q Consensus 257 ~L~L~~n~ 264 (967)
.++++++.
T Consensus 334 ~~~~~~~~ 341 (362)
T 2ra8_A 334 KIDVSDSQ 341 (362)
T ss_dssp EEECCSBC
T ss_pred EEEecCCc
Confidence 57888776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=2e-08 Score=108.59 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=86.9
Q ss_pred cccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhcc--CCCCCCEEECCCC--cCcccCCCcccc
Q 002097 640 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC--RLNQLQLLDLSDN--NLHGLIPSCFDN 715 (967)
Q Consensus 640 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n--~l~~~~~~~~~~ 715 (967)
.+..+|+|+.|+|++|.-. .++. +. +++|++|++..|.+.......+. .+|+|+.|+|+.+ ...+.. .+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~ 241 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNV 241 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHH
Confidence 4566778888888776311 2222 32 67888888888877654444443 6788888887532 111100 0000
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccc---cC
Q 002097 716 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI---GN 792 (967)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~---~~ 792 (967)
+. .......+++|+.|+|++|.+....+..+ ..
T Consensus 242 l~--------------------------------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 242 FR--------------------------------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277 (362)
T ss_dssp TG--------------------------------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred HH--------------------------------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence 00 00000113467777777777654332222 24
Q ss_pred CCCCCEEECcCccccccC----cccccCCCCCCEEECcCCcCcccCCccccC-CCcCCeEecCCCc
Q 002097 793 LTRIQTLNLSHNNLTGTI----PLTFSNLRHIESLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNN 853 (967)
Q Consensus 793 l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~l~ls~N~ 853 (967)
+++|+.|+|+.|.+++.- +..+..+++|+.|+|++|.++...-..+.. + ...++++.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 667777777777776532 233344577777777777665433222322 2 2345555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=1.5e-07 Score=91.53 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=74.9
Q ss_pred chhhhcCCCCCCEEECCCC-cCCCC---CChhhhcCCCCCCEEEcCCCCCCccccc---cCccCCCCccEEECCCCCCCC
Q 002097 38 ILSSVARLSSLTSLHLSHN-ILQGS---IDAKEFDSLSNLEELDINDNEIDNVEVS---RGYRGLRKLKSLDLSGVGIRD 110 (967)
Q Consensus 38 ~~~~l~~l~~L~~L~L~~~-~i~~~---i~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~l~~L~~L~L~~~~l~~ 110 (967)
+...+...++|++|+|++| .+... .-...+...++|++|+|++|.+.+.... ..+...+.|++|+|++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445556666666666666 55521 0122345566677777777776554321 234455667777777777643
Q ss_pred Cc--hhhhhcCCCCcccEEec--cCCcccccc--ccchhhcCCCCCcEEEcCCCCCchh
Q 002097 111 GN--KLLQSMGSFPSLNTLHL--ESNNFTATL--TTTQELHNFTNLEYLTLDDSSLHIS 163 (967)
Q Consensus 111 ~~--~~~~~l~~l~~L~~L~L--~~n~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~ 163 (967)
.+ .+...+...++|++|+| ++|.+.... .....+...++|++|++++|.+...
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 22 23455666777888888 667775431 1223566678888888888877644
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=2.7e-07 Score=89.85 Aligned_cols=120 Identities=8% Similarity=0.075 Sum_probs=91.6
Q ss_pred hhhcCCCccEEECCCC-ccCcc----chhhhcCCCCCCEEECCCCcCCCCC---ChhhhcCCCCCCEEEcCCCCCCcccc
Q 002097 17 RLSRLSKLKKLDLRGN-LCNNS----ILSSVARLSSLTSLHLSHNILQGSI---DAKEFDSLSNLEELDINDNEIDNVEV 88 (967)
Q Consensus 17 ~l~~l~~L~~L~Ls~~-~~~~~----~~~~l~~l~~L~~L~L~~~~i~~~i---~~~~~~~l~~L~~L~Ls~n~i~~~~~ 88 (967)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+...- -.+.+...+.|++|+|++|.|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4677899999999999 88753 4566777899999999999987321 12335667889999999999987542
Q ss_pred c---cCccCCCCccEEEC--CCCCCCCCc--hhhhhcCCCCcccEEeccCCcccc
Q 002097 89 S---RGYRGLRKLKSLDL--SGVGIRDGN--KLLQSMGSFPSLNTLHLESNNFTA 136 (967)
Q Consensus 89 ~---~~~~~l~~L~~L~L--~~~~l~~~~--~~~~~l~~l~~L~~L~L~~n~~~~ 136 (967)
. ..+...+.|++|+| ++|.+.+.+ .+...+...++|++|+|++|.+..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 1 45778889999999 889884322 244566777999999999998753
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1.4e-06 Score=88.95 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=31.6
Q ss_pred hcccceEECCCCcccC--CCcccccCCCCCCEEECcCccccccCcccccCCC--CCCEEECcCCcCcccCC
Q 002097 769 LSLLAGLDLSCNKLVG--HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR--HIESLDLSYNKLSGKIP 835 (967)
Q Consensus 769 l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p 835 (967)
++.|++|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|++.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3455555555555554 2233444555555555555555543 1222222 55555555555554444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=7e-07 Score=91.10 Aligned_cols=63 Identities=32% Similarity=0.434 Sum_probs=28.8
Q ss_pred CCCCCCEEECCCCcCCCCCCh--hhhcCCCCCCEEEcCCCCCCccccccCccCCCCccEEECCCCCC
Q 002097 44 RLSSLTSLHLSHNILQGSIDA--KEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 108 (967)
Q Consensus 44 ~l~~L~~L~L~~~~i~~~i~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~~~l 108 (967)
++++|++|+|++|++.+ ++. ..++.+++|++|+|++|.+.+......+..+ +|++|+|++|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcC
Confidence 34555555555555552 221 2234555555555555555544211122222 455555555444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1e-06 Score=83.00 Aligned_cols=83 Identities=14% Similarity=0.309 Sum_probs=40.3
Q ss_pred CCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCC-CCccccccCccCC----CCccEEECCCCC-CCCCchhhhhcCC
Q 002097 47 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE-IDNVEVSRGYRGL----RKLKSLDLSGVG-IRDGNKLLQSMGS 120 (967)
Q Consensus 47 ~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l----~~L~~L~L~~~~-l~~~~~~~~~l~~ 120 (967)
.|++||+++|.++ ......++.+++|++|+|++|. |++... ..++.+ ++|++|++++|. ++ ..-...+..
T Consensus 62 ~L~~LDLs~~~It-d~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~IT--D~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVT--DKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCC-GGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCC--HHHHHHGGG
T ss_pred eEeEEeCcCCCcc-HHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCC--HHHHHHHhc
Confidence 4555555555544 2233334555555555555553 444333 233332 245555555553 42 122334455
Q ss_pred CCcccEEeccCCc
Q 002097 121 FPSLNTLHLESNN 133 (967)
Q Consensus 121 l~~L~~L~L~~n~ 133 (967)
+++|++|++++|.
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 5666666666654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=3.4e-06 Score=79.41 Aligned_cols=85 Identities=22% Similarity=0.352 Sum_probs=52.8
Q ss_pred CCCCEEEcCCCCCCccccccCccCCCCccEEECCCCC-CCCCchhhhhcCCC----CcccEEeccCCccccccccchhhc
Q 002097 71 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG-IRDGNKLLQSMGSF----PSLNTLHLESNNFTATLTTTQELH 145 (967)
Q Consensus 71 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~~~~l~~l----~~L~~L~L~~n~~~~~~~~~~~l~ 145 (967)
..|++||+++|.|++... ..+.++++|++|+|++|. ++ ..-...++.+ ++|++|+|++|.-.++. ....+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~It--D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIE--DGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCC--HHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGG
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccC--HHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHh
Confidence 357777777777776665 456777777777777774 42 2334445443 46777777777532222 123556
Q ss_pred CCCCCcEEEcCCCC
Q 002097 146 NFTNLEYLTLDDSS 159 (967)
Q Consensus 146 ~l~~L~~L~L~~~~ 159 (967)
.+++|++|++++|.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 67777777777764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.00069 Score=65.01 Aligned_cols=122 Identities=10% Similarity=0.099 Sum_probs=75.2
Q ss_pred hhhcCCCCCCEEECCCC-cCCCC---CChhhhcCCCCCCEEEcCCCCCCccccc---cCccCCCCccEEECCCCCCCCCc
Q 002097 40 SSVARLSSLTSLHLSHN-ILQGS---IDAKEFDSLSNLEELDINDNEIDNVEVS---RGYRGLRKLKSLDLSGVGIRDGN 112 (967)
Q Consensus 40 ~~l~~l~~L~~L~L~~~-~i~~~---i~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~l~~L~~L~L~~~~l~~~~ 112 (967)
..+.+-+.|++|+|+++ .|... .-.+++..-+.|++|+|++|.|.+.... ..+..-+.|++|+|+.|.|.+.+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33445567777777764 55411 0123345566777777777777655431 12446677888888888874332
Q ss_pred --hhhhhcCCCCcccEEeccCCc---cccc--cccchhhcCCCCCcEEEcCCCCCc
Q 002097 113 --KLLQSMGSFPSLNTLHLESNN---FTAT--LTTTQELHNFTNLEYLTLDDSSLH 161 (967)
Q Consensus 113 --~~~~~l~~l~~L~~L~L~~n~---~~~~--~~~~~~l~~l~~L~~L~L~~~~~~ 161 (967)
.+.+.+..-+.|++|+|+++. +... ......+..-++|+.|+++.+.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 344567777789999998653 2211 112345677789999999887654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.97 E-value=0.0012 Score=63.45 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=23.9
Q ss_pred hhcCCCCcccEEeccCCccccc--cccchhhcCCCCCcEEEcCCCCCchhhhhhh
Q 002097 116 QSMGSFPSLNTLHLESNNFTAT--LTTTQELHNFTNLEYLTLDDSSLHISLLQSI 168 (967)
Q Consensus 116 ~~l~~l~~L~~L~L~~n~~~~~--~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l 168 (967)
+.+..-+.|++|+|++|.+... ....+.+..-+.|++|+|++|.++..+...+
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3344444455555555544321 1112334444555555555555554444433
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0016 Score=58.45 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=33.2
Q ss_pred EEECcCcccc-ccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCC
Q 002097 798 TLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 859 (967)
Q Consensus 798 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 859 (967)
.++.+++.++ ..+|..+. ++|+.|||++|+|+..-+..|..+++|+.|+|++|++.|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4555555554 23333322 346666666666665445556666666666666666666443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0033 Score=56.27 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=49.2
Q ss_pred ceEECCCCccc-CCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcc
Q 002097 773 AGLDLSCNKLV-GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 832 (967)
Q Consensus 773 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 832 (967)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888999987 35665543 479999999999998888899999999999999999864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.22 E-value=14 Score=30.59 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCccEEECCC
Q 002097 61 SIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 105 (967)
Q Consensus 61 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 105 (967)
.|...+|.++++|+.+.|-.+ ++.+.. .+|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcC
Confidence 456666666666666666543 333332 4566677777666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.65 E-value=60 Score=26.64 Aligned_cols=40 Identities=5% Similarity=0.155 Sum_probs=17.8
Q ss_pred CccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCC
Q 002097 542 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 582 (967)
Q Consensus 542 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 582 (967)
..+|.+|++|+.+.|-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 334445555555544432 2223334445555555554443
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.60 E-value=24 Score=23.10 Aligned_cols=16 Identities=0% Similarity=-0.004 Sum_probs=6.9
Q ss_pred ehhhhHHHHHHHhhhh
Q 002097 914 ITFTISYVIVIFGIVV 929 (967)
Q Consensus 914 ~~~~~~~~~~~~~~~~ 929 (967)
.+.+++.++++..+..
T Consensus 14 AGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 3444454444443333
Done!