Query 002099
Match_columns 967
No_of_seqs 721 out of 4780
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 16:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2E-61 4.3E-66 564.7 52.2 503 43-569 6-519 (525)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 1.6E-54 3.5E-59 504.6 43.8 406 55-486 30-448 (559)
3 KOG1965 Sodium/hydrogen exchan 100.0 4.7E-52 1E-56 460.1 31.8 435 11-462 9-462 (575)
4 COG0025 NhaP NhaP-type Na+/H+ 100.0 8E-50 1.7E-54 453.6 42.3 404 34-463 5-415 (429)
5 KOG1966 Sodium/hydrogen exchan 100.0 2.2E-47 4.8E-52 418.4 13.0 415 47-488 54-482 (670)
6 PRK05326 potassium/proton anti 100.0 6.7E-44 1.5E-48 423.9 36.2 389 34-461 5-398 (562)
7 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 3E-42 6.5E-47 400.5 39.0 397 37-451 16-437 (810)
8 COG3263 NhaP-type Na+/H+ and K 100.0 1.6E-41 3.5E-46 357.5 30.1 387 34-459 5-394 (574)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 4.3E-35 9.2E-40 335.1 -1.2 372 44-452 5-380 (380)
10 PLN03159 cation/H(+) antiporte 100.0 6.1E-29 1.3E-33 303.9 37.3 356 32-410 40-404 (832)
11 PRK03562 glutathione-regulated 100.0 9.2E-29 2E-33 295.1 37.1 337 34-408 4-346 (621)
12 PRK03659 glutathione-regulated 100.0 1E-28 2.3E-33 294.3 37.0 337 33-409 3-344 (601)
13 PRK10669 putative cation:proto 100.0 5.1E-27 1.1E-31 279.8 37.6 340 35-410 6-356 (558)
14 COG0475 KefB Kef-type K+ trans 100.0 1.5E-26 3.3E-31 261.4 36.4 340 34-408 5-351 (397)
15 TIGR00932 2a37 transporter, mo 100.0 2.5E-27 5.4E-32 257.5 27.9 268 45-334 2-272 (273)
16 KOG4505 Na+/H+ antiporter [Ino 100.0 8.1E-27 1.8E-31 238.2 22.5 394 40-451 19-432 (467)
17 KOG0498 K+-channel ERG and rel 99.9 2.2E-21 4.8E-26 226.2 16.9 209 647-866 338-550 (727)
18 COG4651 RosB Kef-type K+ trans 99.9 2.3E-19 5E-24 181.8 27.7 366 34-447 5-385 (408)
19 KOG1650 Predicted K+/H+-antipo 99.8 4.6E-19 9.9E-24 213.8 21.6 389 31-453 19-420 (769)
20 PRK09392 ftrB transcriptional 99.8 7E-19 1.5E-23 187.3 15.6 200 735-956 6-209 (236)
21 KOG0500 Cyclic nucleotide-gate 99.8 2E-18 4.4E-23 186.3 18.3 200 647-859 226-433 (536)
22 KOG0499 Cyclic nucleotide-gate 99.8 8.7E-19 1.9E-23 191.1 13.0 212 635-860 434-652 (815)
23 PLN03192 Voltage-dependent pot 99.8 8.5E-18 1.8E-22 209.6 23.2 193 663-866 310-503 (823)
24 PRK11753 DNA-binding transcrip 99.8 5.6E-18 1.2E-22 177.2 13.4 199 745-957 6-206 (211)
25 PRK11161 fumarate/nitrate redu 99.7 3.8E-17 8.3E-22 173.9 12.1 205 738-959 15-224 (235)
26 KOG0614 cGMP-dependent protein 99.7 4.3E-17 9.2E-22 176.4 11.3 175 734-920 152-329 (732)
27 PRK10402 DNA-binding transcrip 99.7 5.7E-17 1.2E-21 171.1 10.7 183 754-958 26-208 (226)
28 KOG1113 cAMP-dependent protein 99.7 5.9E-17 1.3E-21 169.0 10.0 172 735-918 121-295 (368)
29 TIGR03697 NtcA_cyano global ni 99.7 9.8E-17 2.1E-21 165.3 9.6 179 767-959 1-183 (193)
30 COG0664 Crp cAMP-binding prote 99.7 5.9E-16 1.3E-20 162.0 13.9 207 739-958 3-210 (214)
31 PRK09391 fixK transcriptional 99.6 2.6E-15 5.6E-20 158.8 13.1 180 755-957 34-218 (230)
32 PRK13918 CRP/FNR family transc 99.6 2.5E-15 5.4E-20 156.0 11.7 180 758-958 5-188 (202)
33 cd00038 CAP_ED effector domain 99.6 2.3E-14 4.9E-19 133.4 12.9 114 743-856 1-114 (115)
34 PF00027 cNMP_binding: Cyclic 99.5 9.8E-14 2.1E-18 123.7 10.4 91 761-851 1-91 (91)
35 smart00100 cNMP Cyclic nucleot 99.5 9.8E-13 2.1E-17 123.1 13.8 115 743-857 1-117 (120)
36 COG2905 Predicted signal-trans 99.4 3.3E-12 7.3E-17 141.5 15.4 130 733-866 4-133 (610)
37 KOG0614 cGMP-dependent protein 99.4 7E-13 1.5E-17 144.2 7.8 129 735-863 271-401 (732)
38 PLN02868 acyl-CoA thioesterase 99.3 5.8E-12 1.3E-16 144.8 12.6 116 733-851 5-120 (413)
39 PRK14853 nhaA pH-dependent sod 99.1 1.6E-08 3.5E-13 112.6 26.3 259 99-394 64-345 (423)
40 KOG0501 K+-channel KCNQ [Inorg 99.1 1.4E-10 3.1E-15 127.1 9.6 193 647-861 474-670 (971)
41 KOG1113 cAMP-dependent protein 99.0 6.4E-10 1.4E-14 117.0 6.1 114 735-852 239-352 (368)
42 KOG2968 Predicted esterase of 98.6 6.2E-08 1.3E-12 112.2 7.4 113 753-865 502-614 (1158)
43 TIGR00773 NhaA Na+/H+ antiport 98.5 7.8E-06 1.7E-10 89.7 19.7 256 99-394 54-326 (373)
44 COG0786 GltS Na+/glutamate sym 98.0 0.0082 1.8E-07 65.7 28.4 122 33-167 7-133 (404)
45 KOG2968 Predicted esterase of 98.0 1.9E-05 4.1E-10 92.3 8.6 169 766-952 393-587 (1158)
46 PRK14856 nhaA pH-dependent sod 97.8 0.0016 3.5E-08 73.0 20.4 255 99-394 70-380 (438)
47 PF03616 Glt_symporter: Sodium 97.7 0.098 2.1E-06 59.0 32.6 95 31-136 3-100 (368)
48 PRK09560 nhaA pH-dependent sod 97.7 0.0024 5.1E-08 70.6 18.8 257 99-394 61-335 (389)
49 PRK14855 nhaA pH-dependent sod 97.7 0.0026 5.6E-08 71.0 19.3 252 99-394 65-365 (423)
50 PRK09561 nhaA pH-dependent sod 97.6 0.0027 5.9E-08 69.9 18.0 256 99-394 61-333 (388)
51 PF06965 Na_H_antiport_1: Na+/ 97.6 0.00043 9.2E-09 76.1 10.9 259 99-394 57-333 (378)
52 PRK14854 nhaA pH-dependent sod 97.5 0.0053 1.1E-07 67.5 18.8 255 99-394 58-330 (383)
53 PF03601 Cons_hypoth698: Conse 97.5 0.067 1.5E-06 58.5 26.6 160 43-215 9-169 (305)
54 COG3004 NhaA Na+/H+ antiporter 97.5 0.0096 2.1E-07 63.0 18.5 265 105-406 70-349 (390)
55 PRK11832 putative DNA-binding 97.4 0.00096 2.1E-08 67.5 10.7 176 753-957 16-198 (207)
56 PF04831 Popeye: Popeye protei 97.4 0.0054 1.2E-07 58.1 14.1 116 746-866 14-136 (153)
57 TIGR00698 conserved hypothetic 96.7 1.4 3E-05 48.9 32.1 148 55-215 27-175 (335)
58 PRK03562 glutathione-regulated 96.7 0.027 5.8E-07 68.4 15.2 70 101-173 269-338 (621)
59 PRK03659 glutathione-regulated 96.6 0.034 7.3E-07 67.4 15.5 73 100-175 265-337 (601)
60 KOG3542 cAMP-regulated guanine 96.5 0.0021 4.6E-08 72.9 3.9 109 735-848 280-390 (1283)
61 TIGR00210 gltS sodium--glutama 95.9 4.5 9.7E-05 46.1 32.5 116 33-165 5-129 (398)
62 COG2855 Predicted membrane pro 95.8 3.9 8.5E-05 44.7 24.7 163 37-215 13-178 (334)
63 PRK10669 putative cation:proto 95.6 0.24 5.1E-06 59.8 16.1 72 101-175 277-348 (558)
64 PLN03159 cation/H(+) antiporte 95.4 0.13 2.8E-06 64.6 13.2 72 101-175 323-396 (832)
65 TIGR03802 Asp_Ala_antiprt aspa 95.1 0.19 4.1E-06 60.2 12.6 134 35-187 10-147 (562)
66 COG0475 KefB Kef-type K+ trans 94.5 0.64 1.4E-05 53.3 14.7 118 44-176 228-346 (397)
67 PRK03818 putative transporter; 94.4 1 2.2E-05 53.9 16.5 122 32-168 3-131 (552)
68 PF06826 Asp-Al_Ex: Predicted 94.4 0.55 1.2E-05 46.6 11.9 115 41-167 3-124 (169)
69 PRK04972 putative transporter; 94.3 0.7 1.5E-05 55.3 14.8 128 35-183 12-145 (558)
70 PF05684 DUF819: Protein of un 94.0 14 0.0003 42.0 26.3 84 58-153 24-107 (378)
71 PF13593 DUF4137: SBF-like CPA 93.5 11 0.00023 41.8 21.2 152 96-252 27-186 (313)
72 TIGR03082 Gneg_AbrB_dup membra 92.9 3.4 7.5E-05 40.6 14.5 124 43-186 3-130 (156)
73 COG0679 Predicted permeases [G 92.5 20 0.00043 39.7 26.6 141 282-453 167-307 (311)
74 COG0385 Predicted Na+-dependen 91.8 20 0.00044 39.2 19.8 148 101-254 39-191 (319)
75 PF03956 DUF340: Membrane prot 91.1 0.89 1.9E-05 46.1 8.2 89 64-170 3-96 (191)
76 PF01758 SBF: Sodium Bile acid 91.0 3.9 8.4E-05 41.6 13.0 108 104-217 2-113 (187)
77 KOG3542 cAMP-regulated guanine 90.9 0.27 5.9E-06 56.5 4.7 90 735-837 36-125 (1283)
78 PF03601 Cons_hypoth698: Conse 90.4 6.3 0.00014 43.3 14.6 164 262-456 3-172 (305)
79 PRK12460 2-keto-3-deoxyglucona 88.4 7.9 0.00017 42.1 13.2 70 105-177 197-268 (312)
80 TIGR00210 gltS sodium--glutama 88.4 21 0.00045 40.9 17.3 167 34-211 218-393 (398)
81 PF03390 2HCT: 2-hydroxycarbox 88.1 4.1 8.8E-05 46.1 11.2 133 40-184 255-391 (414)
82 TIGR00832 acr3 arsenical-resis 88.0 49 0.0011 36.9 24.1 25 104-128 47-71 (328)
83 TIGR00783 ccs citrate carrier 87.8 4.6 9.9E-05 44.7 11.1 117 58-184 203-324 (347)
84 PRK05326 potassium/proton anti 87.2 5.3 0.00012 48.3 12.5 66 100-167 274-339 (562)
85 COG3493 CitS Na+/citrate sympo 86.8 56 0.0012 36.3 23.4 43 100-142 111-153 (438)
86 COG0798 ACR3 Arsenite efflux p 85.6 62 0.0013 35.6 24.9 183 56-255 14-203 (342)
87 TIGR00698 conserved hypothetic 85.5 20 0.00044 39.8 14.8 37 262-298 7-47 (335)
88 TIGR00946 2a69 he Auxin Efflux 85.4 65 0.0014 35.7 26.5 139 282-453 181-320 (321)
89 COG2431 Predicted membrane pro 84.9 5.5 0.00012 41.9 9.3 89 61-168 108-201 (297)
90 PF03616 Glt_symporter: Sodium 84.5 17 0.00037 41.1 14.0 113 36-162 222-339 (368)
91 TIGR00808 malonate_madM malona 84.3 24 0.00051 35.5 12.8 107 35-150 16-129 (254)
92 PF05145 AmoA: Putative ammoni 84.3 22 0.00047 39.5 14.5 109 38-163 155-267 (318)
93 COG2985 Predicted permease [Ge 84.1 6 0.00013 45.0 9.8 87 101-188 60-149 (544)
94 TIGR00844 c_cpa1 na(+)/h(+) an 83.9 12 0.00027 46.0 13.2 33 888-920 709-741 (810)
95 PRK04972 putative transporter; 83.8 10 0.00022 45.6 12.4 132 37-183 383-526 (558)
96 COG3180 AbrB Putative ammonia 83.2 20 0.00043 39.8 13.1 109 40-163 190-300 (352)
97 PRK12460 2-keto-3-deoxyglucona 82.7 53 0.0012 35.9 16.0 79 105-184 50-129 (312)
98 COG2855 Predicted membrane pro 82.0 20 0.00043 39.3 12.5 148 278-457 33-182 (334)
99 COG1346 LrgB Putative effector 81.9 45 0.00098 34.5 14.2 38 114-151 78-115 (230)
100 TIGR01625 YidE_YbjL_dupl AspT/ 79.4 19 0.00041 35.2 10.4 111 61-183 23-138 (154)
101 PF05982 DUF897: Domain of unk 78.4 17 0.00037 39.7 10.5 112 60-187 177-292 (327)
102 COG3493 CitS Na+/citrate sympo 78.3 22 0.00049 39.3 11.3 85 99-184 322-410 (438)
103 TIGR00841 bass bile acid trans 75.8 1.3E+02 0.0027 32.9 21.8 86 106-197 14-105 (286)
104 PF03812 KdgT: 2-keto-3-deoxyg 72.9 57 0.0012 35.5 12.6 156 105-276 50-211 (314)
105 TIGR03802 Asp_Ala_antiprt aspa 70.1 31 0.00067 41.5 11.2 109 60-183 416-531 (562)
106 PF00999 Na_H_Exchanger: Sodiu 68.8 3 6.5E-05 47.6 2.3 110 51-176 226-339 (380)
107 TIGR00400 mgtE Mg2+ transporte 66.5 45 0.00099 39.0 11.4 21 56-76 282-302 (449)
108 PRK04125 murein hydrolase regu 66.0 50 0.0011 31.7 9.3 40 113-152 78-117 (141)
109 PRK03818 putative transporter; 65.4 54 0.0012 39.4 11.9 130 37-181 371-515 (552)
110 PF03547 Mem_trans: Membrane t 63.8 2.6E+02 0.0057 31.7 24.7 54 282-336 243-296 (385)
111 PRK04288 antiholin-like protei 63.5 2E+02 0.0043 30.2 21.8 37 115-151 82-118 (232)
112 TIGR02454 CbiQ_TIGR cobalt ABC 62.0 69 0.0015 32.6 10.7 25 167-191 110-134 (198)
113 COG3329 Predicted permease [Ge 61.2 2.5E+02 0.0053 30.5 15.8 105 60-185 17-130 (372)
114 TIGR00831 a_cpa1 Na+/H+ antipo 59.8 69 0.0015 38.3 11.5 41 679-719 480-520 (525)
115 KOG1650 Predicted K+/H+-antipo 58.0 41 0.00089 42.1 9.4 74 100-177 310-383 (769)
116 KOG3826 Na+/H+ antiporter [Ino 57.8 13 0.00029 38.2 4.2 112 57-180 125-236 (252)
117 PF07883 Cupin_2: Cupin domain 56.3 35 0.00075 27.9 6.0 67 762-837 3-70 (71)
118 PRK01658 holin-like protein; V 56.2 99 0.0022 28.9 9.4 47 103-152 68-114 (122)
119 PF13545 HTH_Crp_2: Crp-like h 56.0 0.89 1.9E-05 38.4 -3.9 37 921-958 31-67 (76)
120 PF03390 2HCT: 2-hydroxycarbox 53.1 4.1E+02 0.0088 30.5 32.5 122 33-164 27-155 (414)
121 PRK09903 putative transporter 52.4 3.6E+02 0.0078 29.7 27.5 138 283-453 173-310 (314)
122 TIGR00946 2a69 he Auxin Efflux 49.7 1.8E+02 0.004 32.1 12.2 70 57-138 180-249 (321)
123 PRK01821 hypothetical protein; 48.3 1.5E+02 0.0032 28.2 9.3 47 103-152 73-119 (133)
124 COG1301 GltP Na+/H+-dicarboxyl 47.5 5E+02 0.011 30.0 20.3 91 117-216 66-158 (415)
125 smart00835 Cupin_1 Cupin. This 47.2 56 0.0012 31.5 6.7 79 759-840 32-111 (146)
126 TIGR00932 2a37 transporter, mo 47.0 1.6E+02 0.0034 31.7 10.9 59 274-339 9-67 (273)
127 COG0786 GltS Na+/glutamate sym 46.8 3.6E+02 0.0079 30.5 13.3 156 38-205 225-390 (404)
128 PF05684 DUF819: Protein of un 46.2 3.8E+02 0.0083 30.5 14.0 74 99-176 266-341 (378)
129 PF03812 KdgT: 2-keto-3-deoxyg 46.0 1.5E+02 0.0033 32.3 10.1 41 104-144 201-241 (314)
130 COG3329 Predicted permease [Ge 45.7 49 0.0011 35.6 6.1 143 52-208 209-362 (372)
131 PF04172 LrgB: LrgB-like famil 45.6 3.7E+02 0.008 27.9 14.7 34 118-151 69-102 (215)
132 PRK13290 ectC L-ectoine syntha 45.5 98 0.0021 29.1 7.7 68 760-837 38-106 (125)
133 TIGR01610 phage_O_Nterm phage 45.2 2.3 4.9E-05 37.9 -3.2 41 918-959 47-89 (95)
134 COG1380 Putative effector of m 44.4 1.5E+02 0.0033 27.9 8.6 39 114-152 77-115 (128)
135 PRK01663 C4-dicarboxylate tran 44.4 3.5E+02 0.0076 31.4 13.6 16 201-216 149-164 (428)
136 TIGR00793 kdgT 2-keto-3-deoxyg 43.2 2.5E+02 0.0055 30.6 11.1 40 104-143 201-240 (314)
137 COG2985 Predicted permease [Ge 42.8 62 0.0013 37.3 6.8 126 38-180 368-508 (544)
138 TIGR03037 anthran_nbaC 3-hydro 42.6 78 0.0017 31.0 6.6 67 766-840 37-104 (159)
139 TIGR02865 spore_II_E stage II 41.3 8.3E+02 0.018 30.8 21.5 20 233-252 191-210 (764)
140 PF05899 Cupin_3: Protein of u 41.0 41 0.00089 28.3 4.0 41 764-811 14-54 (74)
141 PF01384 PHO4: Phosphate trans 39.5 4.3E+02 0.0093 29.4 12.9 72 173-255 76-148 (326)
142 PF10925 DUF2680: Protein of u 39.1 1.4E+02 0.0031 23.9 6.5 46 529-574 8-53 (59)
143 PRK11283 gltP glutamate/aspart 38.5 7E+02 0.015 29.1 16.0 116 106-226 211-341 (437)
144 TIGR00793 kdgT 2-keto-3-deoxyg 38.3 1.1E+02 0.0024 33.2 7.5 156 105-276 50-211 (314)
145 KOG0498 K+-channel ERG and rel 38.2 54 0.0012 40.3 5.9 92 851-951 411-521 (727)
146 PRK05274 2-keto-3-deoxyglucona 36.9 6.3E+02 0.014 28.1 15.8 79 105-186 52-138 (326)
147 KOG3599 Ca2+-modulated nonsele 36.9 9.7E+02 0.021 30.3 17.5 31 186-216 540-570 (798)
148 TIGR00659 conserved hypothetic 36.5 5.2E+02 0.011 27.0 18.7 35 116-150 77-111 (226)
149 TIGR00400 mgtE Mg2+ transporte 36.3 7.6E+02 0.016 28.8 15.8 20 227-246 353-372 (449)
150 COG0679 Predicted permeases [G 35.8 3.5E+02 0.0077 29.8 11.6 37 99-135 196-232 (311)
151 PF02268 TFIIA_gamma_N: Transc 34.2 1.2E+02 0.0027 23.3 5.1 35 538-572 12-46 (49)
152 COG3180 AbrB Putative ammonia 32.9 7.5E+02 0.016 27.8 30.7 142 37-200 8-155 (352)
153 PF06738 DUF1212: Protein of u 31.6 3.3E+02 0.0071 27.5 9.8 55 239-294 134-188 (193)
154 COG0662 {ManC} Mannose-6-phosp 31.4 1.2E+02 0.0025 28.6 5.9 48 758-811 37-85 (127)
155 PF13194 DUF4010: Domain of un 30.9 6.2E+02 0.013 26.2 15.5 60 145-206 10-69 (211)
156 KOG3787 Glutamate/aspartate an 30.7 3E+02 0.0065 31.7 9.6 36 169-204 316-353 (507)
157 PF03977 OAD_beta: Na+-transpo 30.1 4.8E+02 0.01 28.9 10.7 106 138-256 195-302 (360)
158 PF09851 SHOCT: Short C-termin 29.6 1.1E+02 0.0024 20.9 3.9 26 690-715 4-29 (31)
159 PRK05274 2-keto-3-deoxyglucona 29.1 1.8E+02 0.0039 32.4 7.7 39 105-143 204-242 (326)
160 COG3371 Predicted membrane pro 28.7 5.3E+02 0.011 25.9 9.8 58 56-127 73-130 (181)
161 KOG2150 CCR4-NOT transcription 28.6 8.2E+02 0.018 29.1 12.9 88 663-760 131-219 (575)
162 PF11700 ATG22: Vacuole efflux 28.4 1E+03 0.022 28.0 20.3 50 178-227 272-321 (477)
163 PF00375 SDF: Sodium:dicarboxy 28.2 6.8E+02 0.015 28.6 12.6 100 105-206 187-298 (390)
164 PF06912 DUF1275: Protein of u 28.1 6.6E+02 0.014 25.6 11.5 29 188-216 2-31 (209)
165 PRK13264 3-hydroxyanthranilate 28.0 1.2E+02 0.0025 30.4 5.3 73 760-840 36-110 (177)
166 PRK10263 DNA translocase FtsK; 27.8 3.4E+02 0.0074 35.8 10.6 20 278-297 59-78 (1355)
167 COG4651 RosB Kef-type K+ trans 27.3 8.5E+02 0.018 26.7 12.5 27 103-129 279-305 (408)
168 PRK13628 serine/threonine tran 26.9 6.6E+02 0.014 28.9 12.0 59 167-225 259-325 (402)
169 PRK13027 C4-dicarboxylate tran 26.6 6.6E+02 0.014 29.1 12.0 48 179-226 279-330 (421)
170 COG1725 Predicted transcriptio 26.5 5 0.00011 37.5 -4.2 29 922-951 39-67 (125)
171 TIGR00783 ccs citrate carrier 26.0 9.7E+02 0.021 26.9 23.5 62 100-164 25-86 (347)
172 PRK04190 glucose-6-phosphate i 25.9 2.4E+02 0.0052 28.7 7.3 50 761-811 72-130 (191)
173 KOG2718 Na+-bile acid cotransp 25.8 1.9E+02 0.0041 32.7 7.1 105 104-211 117-222 (371)
174 KOG2378 cAMP-regulated guanine 23.9 62 0.0013 36.6 2.8 43 807-849 1-44 (573)
175 PRK10263 DNA translocase FtsK; 23.1 1.9E+03 0.042 29.3 19.9 21 674-694 691-711 (1355)
176 PRK01663 C4-dicarboxylate tran 22.6 7.5E+02 0.016 28.7 11.5 46 180-225 280-329 (428)
177 PRK11660 putative transporter; 22.6 1.4E+03 0.03 27.6 20.5 79 116-196 272-361 (568)
178 COG1108 ZnuB ABC-type Mn2+/Zn2 22.2 1E+03 0.022 25.8 12.1 62 228-297 13-78 (274)
179 PF04632 FUSC: Fusaric acid re 22.2 1.2E+03 0.025 28.7 14.1 17 236-252 395-411 (650)
180 COG1917 Uncharacterized conser 22.1 1.7E+02 0.0036 27.5 5.2 49 759-813 45-94 (131)
181 PF02632 BioY: BioY family; I 21.5 3E+02 0.0065 26.7 6.8 127 34-174 6-133 (148)
182 TIGR03404 bicupin_oxalic bicup 21.0 2.4E+02 0.0052 32.0 6.9 53 758-811 246-299 (367)
183 PRK05771 V-type ATP synthase s 20.6 3.6E+02 0.0077 33.3 8.9 75 646-720 214-299 (646)
No 1
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=2e-61 Score=564.72 Aligned_cols=503 Identities=24% Similarity=0.355 Sum_probs=393.7
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHH
Q 002099 43 SLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI 122 (967)
Q Consensus 43 ~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l 122 (967)
+++.+.....+++|+++|++++++++|+++|+.+.+. ..+++|+.++.+++|+++|.+|+++|++.+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-------------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-------------EVPLDREIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3444555567889999999999999999999865321 035789999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHHH
Q 002099 123 KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG 202 (967)
Q Consensus 123 ~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD~ 202 (967)
|+++++++.+|+++++++++++|+.++++ + ++||..|+++|+++|||||+++.+++++.++|+++.++++|||++||+
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~-~-~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~ 150 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWI-L-GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDG 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcch
Confidence 99999999999999999999999999884 3 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhhCC
Q 002099 203 TAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGAD 281 (967)
Q Consensus 203 ~aivlf~~~~~~~~~-~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~a~e~lg 281 (967)
+++++|.++.++..+ +..++......+...++||+++|+++|++..+++++..+++..++.++++++|++|++| |.+|
T Consensus 151 ~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg 229 (525)
T TIGR00831 151 AALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFH 229 (525)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhC
Confidence 999999999988764 55666655555556678889999999999888887767777889999999999999999 7899
Q ss_pred CcchHHHHHHHHHHhhhhcc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCc--chHH---HH
Q 002099 282 VSGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG--NSWG---YL 355 (967)
Q Consensus 282 ~Sgila~~~aGl~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~--~~~~---~~ 355 (967)
.||++|+|++|++++++++. +.+++.+...+.||+.+++++|+++|+++|++++.............. ..+. ..
T Consensus 230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (525)
T TIGR00831 230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNA 309 (525)
T ss_pred CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999997766 678888899999999999999999999999999763321100000000 0111 13
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccC-CCCcccccccccchhhhhh
Q 002099 356 ILLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSS-GGSSLITSETGTLFVFFTG 432 (967)
Q Consensus 356 ~~~~~~~~v~R~l~v~~~--~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~-~~~~~~~~~~~~~i~~~~~ 432 (967)
++++..+...|+++++.. .++.++.+.+++||++++++|+|+||++++++|+++|... ++.+++ .++.+++.++
T Consensus 310 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~ 386 (525)
T TIGR00831 310 FVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAA 386 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHH
Confidence 344555666787665331 1222333456789999999999999999999999999763 333432 3688999999
Q ss_pred hhhhhhhhccccchHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCChHHH-HHHHHHhhhhcCC
Q 002099 433 GIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGV 511 (967)
Q Consensus 433 ~vvl~Tl~i~g~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v-~~~~~~l~~~~~~ 511 (967)
++|++|+++||+|+|+++|++++++.++. +.....++..+.+++.+.++++..++...++..+.+ ++|..++++.+.+
T Consensus 387 ~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (525)
T TIGR00831 387 GVILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRAD 465 (525)
T ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999877643 334455677788888888888766554433223333 3455554443221
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 002099 512 PMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEG 569 (967)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~g~i~~~~~~~l~~~~~~~ 569 (967)
.. ... + +...+.+..+++|++++++||+.+.+++++|+||+++++.+++.+|..
T Consensus 466 ~~-~~~--~-~~~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~ 519 (525)
T TIGR00831 466 GE-EKI--R-SGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLK 519 (525)
T ss_pred cc-cch--h-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHH
Confidence 11 000 0 000111224578899999999999999999999999999999888753
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=1.6e-54 Score=504.56 Aligned_cols=406 Identities=26% Similarity=0.452 Sum_probs=340.7
Q ss_pred cCC-CCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHH
Q 002099 55 RGT-RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLA 133 (967)
Q Consensus 55 ~r~-~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la 133 (967)
++. ++|++++++++|+++|+...+... . + ...++|++++.++||+|+|++|+++|++.|++++++++.+|
T Consensus 30 ~~~~~lP~s~llil~GlllG~i~~~~~~----~----~-~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lA 100 (559)
T TIGR00840 30 KVIRAVPESVLLIVYGLLVGGIIKASPH----I----D-PPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFA 100 (559)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHcCCC----C----c-cCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 444 599999999999999987543221 1 1 13678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcC------CCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHHHHHHHH
Q 002099 134 GPGVMISTFFLGAALKLTFP------YDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVV 207 (967)
Q Consensus 134 ~~gv~i~~~~~~~~~~~~~~------~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD~~aivl 207 (967)
++|++++++++|+.++++.+ .++||..|+++||++|||||++|.+++++.++|+++.++++|||++||++|+++
T Consensus 101 v~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~gESllNDavaIVL 180 (559)
T TIGR00840 101 VVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVL 180 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhheehhhhhhccHHHHH
Confidence 99999999999999987643 257999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcc--CCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhhCCC
Q 002099 208 YQLFFQMVLG--KSFGWGAI---IKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADV 282 (967)
Q Consensus 208 f~~~~~~~~~--~~~~~~~~---~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~a~e~lg~ 282 (967)
|.++.++... +..++.++ ...+....+||+++|+++|++..+++++..+++..+..++++++|++|++| |.+|+
T Consensus 181 f~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~Y~lA-E~l~~ 259 (559)
T TIGR00840 181 YNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFA-ETLHL 259 (559)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-HHhcc
Confidence 9999987752 33443322 122233467899999999999998888876667789999999999999999 78999
Q ss_pred cchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHHH
Q 002099 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFV 362 (967)
Q Consensus 283 Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 362 (967)
||++|+++||++++++.+.+.+++.+...+.||+.+++++++++|+++|+.+.... ...+|..+++.++++
T Consensus 260 SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~---------~~~~~~~i~~~l~~~ 330 (559)
T TIGR00840 260 SGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN---------HEWNWAFVVATLSFC 330 (559)
T ss_pred chHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999874211 123556666667788
Q ss_pred HHHHHHHHHHHHHHHHhh-CCCCChhhHHHHhhccchhhHHHHHhhhhcccCCCCcccccccccchhhhhhhhhhhhhhc
Q 002099 363 QVSRLFVVGTLYPVLRNF-GYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIV 441 (967)
Q Consensus 363 ~v~R~l~v~~~~~~l~~~-~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i 441 (967)
+++|+++++.++++.+++ +.+.+|||+++++|+|+||++++++|+.+|... . ..++.+++.++++|++|+++
T Consensus 331 ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~GlRGaVa~aLAl~l~~~~-----~--~~~~~i~~~t~~VVl~Tvlv 403 (559)
T TIGR00840 331 VIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALALLLDEKI-----F--PYKFLFVTTTLVVVFFTVIF 403 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCChhhhhheeeeccccHHHHHHHHhCCCCC-----c--chHHHHHHHHHeeehHHHHH
Confidence 899999999888777655 357899999999999999999999999876532 1 12578889999999999999
Q ss_pred cccchHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 002099 442 NGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGD 486 (967)
Q Consensus 442 ~g~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (967)
||+|+||++++|++++.++.++...+....+..++....+|+...
T Consensus 404 qG~T~~pl~~~L~l~~~~~~~~~~~e~~~~~~~~~~~~~ie~~~g 448 (559)
T TIGR00840 404 QGGTIKPLVEVLKVKKGCISKTKINEELHDREFDHLLPGIEDICG 448 (559)
T ss_pred HHhhHHHHHHHhCCCCCccchhhHHHHHHHHHHHHHHhHHHHHhh
Confidence 999999999999999887766655555555666666666666543
No 3
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-52 Score=460.09 Aligned_cols=435 Identities=33% Similarity=0.502 Sum_probs=365.9
Q ss_pred cccccchhhh--hcCCCCCCCcCCCchhHHHHHHHHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHhhhccccccccc
Q 002099 11 LPYRTLEEEQ--KSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTR---VPYTVALLIIGIALGSLEYGTSHQLGK 85 (967)
Q Consensus 11 ~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~~l~~r~~---lP~~v~lil~Gi~lG~~~~~~~~~l~~ 85 (967)
.+|+..+.+. ++.+.+.+.|+.....+++...++.++.+++++.++.| +|+++..++.|+++|.+.....++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~ 88 (575)
T KOG1965|consen 9 LSYDSLEIATDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSS 88 (575)
T ss_pred CCCccchhccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCccc
Confidence 4566333222 34445556677788889999999999999999999999 999999999999999987665543333
Q ss_pred cccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----cCCCCcHHHH
Q 002099 86 IGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT----FPYDWSWKTS 161 (967)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~----~~~~~~~~~a 161 (967)
.+. +. ..++|+.|+.+++||++|++|++++.+.+++|+.++..+|++|++|++.++|..++++ ++++|+|..|
T Consensus 89 ~~~--~~-~~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~ 165 (575)
T KOG1965|consen 89 RGK--RI-LVFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDC 165 (575)
T ss_pred ccc--ee-EEecccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHH
Confidence 222 11 3688999999999999999999999999999999999999999999999999999988 5678999999
Q ss_pred HHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHH--HHHHHHHHHHHHHHHH
Q 002099 162 LLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWG--AIIKFLAQVSLGAVGM 239 (967)
Q Consensus 162 lllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~ 239 (967)
+++||++|+||||+|++|++++++++.+.+++.|||++|||++||+|+.+.....+...++. ..+..|+..++|+..+
T Consensus 166 L~fGaliSATDPVtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~l 245 (575)
T KOG1965|consen 166 LAFGALISATDPVTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGL 245 (575)
T ss_pred HHHhhHhcccCchHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776554444 3778888999999999
Q ss_pred HHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHH
Q 002099 240 GLAFGIASVLWLGFIF--NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEM 317 (967)
Q Consensus 240 G~~~g~~~~~~l~~~~--~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~ 317 (967)
|+++|.+...+++++. +++..|..+.+.++|.+|+.| |.+|+||++++++||+++++|.+.+++++++...+++|.+
T Consensus 246 Gv~~GlisA~~lK~~~l~~~~~lE~al~ll~sY~sY~lA-E~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~ 324 (575)
T KOG1965|consen 246 GVAIGLISALVLKFLYLRRTPSLESALMLLMSYLSYLLA-EGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRT 324 (575)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999876 477899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-C----CChhhHHHH
Q 002099 318 VAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGY-G----LEWKEAIIL 392 (967)
Q Consensus 318 ~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~-~----~~~~~~~~l 392 (967)
+++++|+++|+++|+.+- ..++. ......++++..++++++|++-++.+..+++..++ + .+.++...+
T Consensus 325 lsflAEtfIF~Y~Gl~~f----~~~k~---~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~ 397 (575)
T KOG1965|consen 325 LSFLAETFIFIYLGLSAF----DFQKH---VYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIM 397 (575)
T ss_pred HHHHHHHHHHHHHhHHHh----cccce---eeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHh
Confidence 999999999999998542 11111 11113456777888999999999888877665543 3 678999999
Q ss_pred hhcc-chhhHHHHHhhhhcccCCCCcccccccccchhhhhhhhhhhhhhccccchHHHHhhcCCCCCcHHH
Q 002099 393 VWSG-LRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATK 462 (967)
Q Consensus 393 ~~~g-~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~~l~l~~~~~~~ 462 (967)
+|.| +|||+++|+|+--..+.+ ...++.+...+..+|++|+++.|.++.|++++|..+.....+
T Consensus 398 ~w~g~lRGAvs~ALa~~~~~~~~------~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~ 462 (575)
T KOG1965|consen 398 WWAGGLRGAVSFALALGDFTDSP------HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAAD 462 (575)
T ss_pred HhhhhhhHHHHHHHHhhhccccc------cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccc
Confidence 9976 999999999976433211 112456667777799999999999999999999987765543
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-50 Score=453.64 Aligned_cols=404 Identities=27% Similarity=0.465 Sum_probs=347.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 34 ~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
...++...++++++.++..+.+|+.+|.++..++.|++.|+...+... .. ...+++.+..+++|+++|++
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~------~~----~~~~~el~~~l~l~ilLf~~ 74 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLIS------PD----LELDPELFLVLFLAILLFAG 74 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccc------cc----ccCChHHHHHHHHHHHHHHh
Confidence 345667788888999999999999999999999999999987543321 11 25689999999999999999
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhh
Q 002099 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTII 193 (967)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li 193 (967)
|+++|++.+|++++++..+++++++++++.+|+..|+++| ++||..|+++||++|||||+++.+++++.++|+|+.+++
T Consensus 75 g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL 153 (429)
T COG0025 75 GLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTIL 153 (429)
T ss_pred HhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHc-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cchhhHHHHHHH
Q 002099 194 EGESLMNDGTAIVVYQLFFQMVL-GKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALTLAV 268 (967)
Q Consensus 194 ~gesl~nD~~aivlf~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~----~~~~~~~l~l~~ 268 (967)
+|||++||++++++|.+++++.. ++.++.......+...++||+++|++.|++..+.+++..+ +...+..++++.
T Consensus 154 ~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~ 233 (429)
T COG0025 154 EGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLL 233 (429)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 99999999999999999999887 4556655666666778899999999999998888877654 477899999999
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccccccccc
Q 002099 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKG-ESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQN 347 (967)
Q Consensus 269 ~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~ 347 (967)
++.+|.+| |.+|.||++|++++|++.++..+.+.++ ..+...++||+.+++++|+++|+++|.+++.....
T Consensus 234 ~~~~~~~a-~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~------- 305 (429)
T COG0025 234 AFAAYLLA-EALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL------- 305 (429)
T ss_pred HHHHHHHH-HHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------
Confidence 99999999 8899999999999999997333334444 44788899999999999999999999999876542
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCChhhHHHHhhccchhhHHHHHhhhhcccCCCCcccccccccc
Q 002099 348 HGNSWGYLILLYIFVQVSRLFVVGTLYPVLR-NFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTL 426 (967)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~-~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~ 426 (967)
...+..++++.++++++|+++++..++..+ ......+|+++.+++|+|+||++++++|+++|....+ ..++.
T Consensus 306 -~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~G~RG~vsla~al~~p~~~~~------~~~~~ 378 (429)
T COG0025 306 -ALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIPLELPG------PAREL 378 (429)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhcccccHHHHHHHHHchhhccc------hhhhH
Confidence 223566788888999999999977665432 3334579999999999999999999999999876532 23678
Q ss_pred hhhhhhhhhhhhhhccccchHHHHhhcCCCCCcHHHH
Q 002099 427 FVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKR 463 (967)
Q Consensus 427 i~~~~~~vvl~Tl~i~g~t~~~l~~~l~l~~~~~~~~ 463 (967)
+++++++++++|+++||.++|++.+++...+.+..++
T Consensus 379 i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~~~~~~~~~ 415 (429)
T COG0025 379 ILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAK 415 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhccCccchhhh
Confidence 8899999999999999999999999999876654443
No 5
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-47 Score=418.45 Aligned_cols=415 Identities=26% Similarity=0.450 Sum_probs=352.9
Q ss_pred HHHHHHhhcCCC--CcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHH
Q 002099 47 GIACRHLLRGTR--VPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKR 124 (967)
Q Consensus 47 ~~~~~~l~~r~~--lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~ 124 (967)
+.+.-++..+++ +|....++++|+++|....+... .. -..++|+.|+...||||++.+|+-|+-|.|..
T Consensus 54 aKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~----~~-----~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~ 124 (670)
T KOG1966|consen 54 AKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALAT----IA-----PFFLESDVFFLYLLPPIVLDAGYFMPNRAFFE 124 (670)
T ss_pred HHhcccccccccccCchhHHHHHHHHHHHHHHHhhhc----cc-----cccccccchhhhhcCHHHhcccccCccHHHHh
Confidence 333334443333 79999999999999998654322 11 03578999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcC---CC--CcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhH
Q 002099 125 CLVQMILLAGPGVMISTFFLGAALKLTFP---YD--WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLM 199 (967)
Q Consensus 125 ~~~~i~~la~~gv~i~~~~~~~~~~~~~~---~~--~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~ 199 (967)
|++.|++.|++|++..++.+|..++.+.+ .+ .++..-++||+++|+.||+||.++++|+++++-+.-++.||||+
T Consensus 125 NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VFGESLl 204 (670)
T KOG1966|consen 125 NLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVFGESLL 204 (670)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeeehhhhh
Confidence 99999999999999999999988886643 23 45788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccC--CcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q 002099 200 NDGTAIVVYQLFFQMVLGK--SFGWGA----IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAF 273 (967)
Q Consensus 200 nD~~aivlf~~~~~~~~~~--~~~~~~----~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~~ 273 (967)
||++.+|+|.++.++..-| +..+.+ .+.|+ .+.+||+++|+++|++..+..|+..+-+..+..+.+.+||++|
T Consensus 205 NDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFf-VVslGG~lvGivfafl~sl~tkft~~vrviePvfif~~pYlaY 283 (670)
T KOG1966|consen 205 NDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFF-VVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLAY 283 (670)
T ss_pred cCceEEehHHHHHHHHHhcccceeEeeeecceeEEE-EEecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhHHHHHH
Confidence 9999999999999887643 333222 33333 4678999999999999988888877777899999999999999
Q ss_pred HHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHH
Q 002099 274 FTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWG 353 (967)
Q Consensus 274 ~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~~~~ 353 (967)
..| |.+|+|||+|..+||+.+..|-+.+++.++...+..|..+++...++++|+++|++.-.. ++.++|.
T Consensus 284 L~a-Em~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~---------~h~wd~~ 353 (670)
T KOG1966|consen 284 LTA-EMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS---------NHHWDFA 353 (670)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC---------cceeehh
Confidence 998 999999999999999999999999999999999999999999999999999999987421 2567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCChhhHHHHhhccchhhHHHHHhhhhcccCCCCcccccccccchhhhhh
Q 002099 354 YLILLYIFVQVSRLFVVGTLYPVLRNFG-YGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTG 432 (967)
Q Consensus 354 ~~~~~~~~~~v~R~l~v~~~~~~l~~~~-~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~ 432 (967)
++.+.++++.+.|+++++.+++++++++ .+++..++++|++||+|||++.+|...+|... ++ ..+.++..|.
T Consensus 354 Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyGGLRGAiaF~LV~lid~~~-----vp--~K~~Fvttti 426 (670)
T KOG1966|consen 354 FICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYGGLRGAIAFGLVVLIDGAK-----VP--AKNMFVTTTI 426 (670)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecCCcchhhheeEEEEecccc-----CC--cccceEeeee
Confidence 8899999999999999999999988776 36789999999999999999999999887532 21 2567777888
Q ss_pred hhhhhhhhccccchHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 002099 433 GIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDE 488 (967)
Q Consensus 433 ~vvl~Tl~i~g~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (967)
.||++|+++||+|++|+++||++++.+..++.+.+....+..+.....+|+....+
T Consensus 427 ~VIfFTVflQGiTIkplvk~L~Vk~~~~~~~~m~e~i~~~~~dhlm~gIEDi~G~~ 482 (670)
T KOG1966|consen 427 AVIFFTVFLQGITIKPLVKFLKVKRKNKRDPTMNEEIYNRLLDHLMAGIEDIAGQK 482 (670)
T ss_pred EEEeeeeeecccchHHHHHHHccccccccCchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999998877776666666677788888887776554
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=6.7e-44 Score=423.87 Aligned_cols=389 Identities=22% Similarity=0.325 Sum_probs=316.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 34 ~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
...++.++++++++.+++.+++|+++|.+++++++|+++||..++..+ .. .....+.+..+++++++|.+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~----~~------~~~~~~~i~~l~L~~iLF~~ 74 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ----FD------NYPLAYLVGNLALAVILFDG 74 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc----cC------cHHHHHHHHHHHHHHHHHcC
Confidence 346677889999999999999999999999999999999997644221 00 01124678899999999999
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcC--CCcchhh
Q 002099 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG--ASKKLNT 191 (967)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~--~~~~l~~ 191 (967)
|+++|++.+|+++++++.+|+.|++++++++++.+++++ +++|..|+++|+++|+|||++|.+++++.| +++++++
T Consensus 75 Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~--g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~ 152 (562)
T PRK05326 75 GLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL--GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVAS 152 (562)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHh
Confidence 999999999999999999999999999999898888876 799999999999999999999999999999 9999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHccCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhhHHHHHHH
Q 002099 192 IIEGESLMNDGTAIVVYQLFFQMVLGKS--FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN-DTVIEIALTLAV 268 (967)
Q Consensus 192 li~gesl~nD~~aivlf~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~-~~~~~~~l~l~~ 268 (967)
++++||++||+++++++.+++++..++. .++..+.. +...+++++++|+++|++..+++++... ++..+.++++++
T Consensus 153 ~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~~ 231 (562)
T PRK05326 153 TLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLL-FLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAG 231 (562)
T ss_pred HhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 9999999999999999999988775544 22333333 3445566777899999998888877643 234567888999
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccC
Q 002099 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (967)
Q Consensus 269 ~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~ 348 (967)
++++|++| |.+|.||++|++++|+++++.. +..+..++++|+.+++++++++|+++|+.+++..+.
T Consensus 232 ~l~~~~~a-~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~-------- 297 (562)
T PRK05326 232 ALLIFALT-AALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL-------- 297 (562)
T ss_pred HHHHHHHH-HHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------
Confidence 99999998 8999999999999999998732 223566889999999999999999999999876541
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccCCCCcccccccccchh
Q 002099 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFV 428 (967)
Q Consensus 349 ~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~ 428 (967)
...+..+++.++.++++|++++ ++....++++|||+.+++|+|+||++++++|..... .+ .. ..+.+.
T Consensus 298 ~~~~~~l~i~~~l~~vaR~l~v-----~l~~~~~~~~~~e~~~i~~~g~RG~v~i~lA~~~~~-~~----~~--~~~~~~ 365 (562)
T PRK05326 298 DIALPALLLALFLILVARPLAV-----FLSLLPFRFNLREKLFISWVGLRGAVPIVLATFPMM-AG----LP--NAQLIF 365 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHccCCCCHhhhheeeeecchhHHHHHHHHHHHH-cC----CC--chhhhh
Confidence 1123333344556788999998 444556789999999999999999999999975322 11 11 123445
Q ss_pred hhhhhhhhhhhhccccchHHHHhhcCCCCCcHH
Q 002099 429 FFTGGIVFLTLIVNGSTTQYILHLLDMDKLSAT 461 (967)
Q Consensus 429 ~~~~~vvl~Tl~i~g~t~~~l~~~l~l~~~~~~ 461 (967)
..++.+|++|+++||.++|++.|++++.++++.
T Consensus 366 ~~~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~ 398 (562)
T PRK05326 366 NVVFFVVLVSLLLQGTTLPWAARKLGVVVPPEA 398 (562)
T ss_pred hhhheeeHHHHHHHHhhHHHHHHHcCCCCCCCC
Confidence 566779999999999999999999999877654
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=3e-42 Score=400.54 Aligned_cols=397 Identities=17% Similarity=0.183 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhc
Q 002099 37 VIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA 116 (967)
Q Consensus 37 ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~ 116 (967)
+++-+++++++.+..++.+|+++|.++.++++|+++||..++..+... .+.. ..+-.+ +.++++++++|.+|++
T Consensus 16 ~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~g~~----d~i~le-IteIvL~I~LFa~Gl~ 89 (810)
T TIGR00844 16 SCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-WGNT----DSITLE-ISRILLCLQVFAVSVE 89 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-cccc----hHHHHH-HHHHHHHHHHHHHHHh
Confidence 334456667777788887899999999999999999998754322000 0000 001122 7778999999999999
Q ss_pred CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHh---hcCCCcchhhhh
Q 002099 117 MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLK---ELGASKKLNTII 193 (967)
Q Consensus 117 ~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~---~l~~~~~l~~li 193 (967)
++++.++++++.+..++++++.+++++++++++++++ |++|..|+++||+++||||+++.++++ ..++|+++..++
T Consensus 90 L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL 168 (810)
T TIGR00844 90 LPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLL 168 (810)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHH
Confidence 9999999999999999999999999999999998876 899999999999999999999999998 456899999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHccC----CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----chhhHHHH
Q 002099 194 EGESLMNDGTAIVVYQLFFQMVLGK----SFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFND----TVIEIALT 265 (967)
Q Consensus 194 ~gesl~nD~~aivlf~~~~~~~~~~----~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~----~~~~~~l~ 265 (967)
++||++||++|++++.+++.+...+ ......++..++..+++|+++|+++|++..+++++..+. ......+.
T Consensus 169 ~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~ 248 (810)
T TIGR00844 169 SCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFY 248 (810)
T ss_pred hhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 9999999999999988887666421 121122344455567788889999999988887765422 22345677
Q ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccccccc
Q 002099 266 LAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIF 345 (967)
Q Consensus 266 l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~ 345 (967)
+++++++|..+ +.+|.||++|+|+||+++++..+ +.. +.....||+.+..+++.++|+++|+.++...+...++
T Consensus 249 LaLAli~~gla-~lLggSGfLAVFVAGl~~gn~~~--~~~--~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l- 322 (810)
T TIGR00844 249 LILALTCAGFG-SMLGVDDLLVSFFAGTAFAWDGW--FAQ--KTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDI- 322 (810)
T ss_pred HHHHHHHHHHH-HHhccccHHHHHHHHHHHhcccc--hhh--hHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchh-
Confidence 78888899888 79999999999999999997443 111 2234669999999999999999999998765522111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccCC--CCc------
Q 002099 346 QNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSG--GSS------ 417 (967)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~--~~~------ 417 (967)
....|..+++.++++++.|+.+++.+.+++ +...+|||+++++|.|+||+.++.++........ ..+
T Consensus 323 --~~~~w~~ilLaL~LifVrRPpaVlll~~li---~~~~s~rErlFigWFGpRGIGSIyyl~~A~~~~~~~~~~~~~~~~ 397 (810)
T TIGR00844 323 --GLDVWRLIILSLVVIFLRRIPAVLILKPLI---PDIKSWREAMFIGHFGPIGVGAVFAAILSKSQLESHLTDEETPLN 397 (810)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccCCCHHHHHHheeeccccHHHHHHHHHHHHhhhcccCccccccc
Confidence 123566677778888899998886554433 3456999999999999999999987655432221 000
Q ss_pred cccc------ccccchhhhhhhhhhhhhhccccchHHHHh
Q 002099 418 LITS------ETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451 (967)
Q Consensus 418 ~~~~------~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~ 451 (967)
..+. .....+..++..+|++|+++||.+.++++-
T Consensus 398 ~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~l 437 (810)
T TIGR00844 398 VTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIML 437 (810)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHHh
Confidence 0000 112356677777999999999999999863
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=357.49 Aligned_cols=387 Identities=23% Similarity=0.367 Sum_probs=321.6
Q ss_pred chhHHHHH-HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhh
Q 002099 34 TDAVIFVG-ISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFE 112 (967)
Q Consensus 34 ~~~ll~~~-~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~ 112 (967)
.+.+++++ ++++++.+...++.|+++|..+..+.+|++.|.-+.+..+ .....-..++..+.|.+++|.
T Consensus 5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~----------fdNy~~Ay~vg~lALaiILfd 74 (574)
T COG3263 5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE----------FDNYPFAYMVGNLALAIILFD 74 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc----------cCccHHHHHHHHHHHHHHhhc
Confidence 34455555 7788888999999999999999999999999986543221 000111356778899999999
Q ss_pred hhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhh
Q 002099 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTI 192 (967)
Q Consensus 113 ~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~l 192 (967)
+|+.++++.+|...+|.+.+|..||++|+.++|.+++|++ +++|.+++++|||+.+||+++|.+++++.+++.|++++
T Consensus 75 gG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll--~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~st 152 (574)
T COG3263 75 GGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL--NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVAST 152 (574)
T ss_pred CccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhh
Confidence 9999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHccC-C-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Q 002099 193 IEGESLMNDGTAIVVYQLFFQMVLGK-S-FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSY 270 (967)
Q Consensus 193 i~gesl~nD~~aivlf~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~ 270 (967)
+|-||.-||.+|+++...++.+..++ + .++...+.++.++.+ |+++|+..|++..+.++|..-|.-....+.++..+
T Consensus 153 LEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~gl-G~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~L 231 (574)
T COG3263 153 LEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGL-GLLLGLGGGKLLLQLINRINLDSGLYPILALAGGL 231 (574)
T ss_pred EEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 99999999999999999888887655 2 566666665555544 45689999999888888886666678899999999
Q ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcc
Q 002099 271 IAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGN 350 (967)
Q Consensus 271 ~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~ 350 (967)
++|.++ +.+|.||++|+.+||++++|. +-..++.+.+|.+-+++++..++|+.+|+.+.+..+. .-
T Consensus 232 l~fs~t-~aiGGsG~LaVYl~Gll~GN~-----~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~--------~i 297 (574)
T COG3263 232 LIFSLT-GAIGGSGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLL--------PI 297 (574)
T ss_pred HHHHHH-HHhcCcccHHHHHHHHHhCCC-----cchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhh--------Hh
Confidence 999998 899999999999999999872 2345788999999999999999999999998775431 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccCCCCcccccccccchhhh
Q 002099 351 SWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFF 430 (967)
Q Consensus 351 ~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~ 430 (967)
..+.+++.+..++++|++++ |+.....+.++||..+++|.|+||+|++.+|.. |-..+ -+...++...
T Consensus 298 avPailL~l~mifvaRP~aV-----~l~l~Pfrf~~~Ek~fvSWvGLRGAv~IilAif-pm~ag------lena~l~FNv 365 (574)
T COG3263 298 AIPAILLSLWMIFVARPLAV-----FLGLIPFRFNRREKLFVSWVGLRGAVPIILAIF-PMMAG------LENARLFFNV 365 (574)
T ss_pred hHHHHHHHHHHHHHHhHHHH-----HHhhcccccCccchheeehhhcccchhhhHhhh-HHhcC------CccceEEeeh
Confidence 34445566777889999999 566666789999999999999999999999965 22211 1123455566
Q ss_pred hhhhhhhhhhccccchHHHHhhcCCCCCc
Q 002099 431 TGGIVFLTLIVNGSTTQYILHLLDMDKLS 459 (967)
Q Consensus 431 ~~~vvl~Tl~i~g~t~~~l~~~l~l~~~~ 459 (967)
++.+|++|+++||.|+|+..+++++..++
T Consensus 366 AF~VVLvSlliQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 366 AFFVVLVSLLIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred hHHHHHHHHHHccCcchHHHHhcccccCC
Confidence 77799999999999999999999987665
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=4.3e-35 Score=335.14 Aligned_cols=372 Identities=25% Similarity=0.383 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHH
Q 002099 44 LVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIK 123 (967)
Q Consensus 44 l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~ 123 (967)
++++.+.+.+.||+++|.+++++++|+++||.+.+..+ +. ....+.+.++++++++|.+|+++|.+.+|
T Consensus 5 i~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~------~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 5 ILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE------PD-----NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred eehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc------ch-----hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455555578999999999999999999998754221 00 14567899999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHHhhcccccccHHHHHHHHhhc-CCCcchhhhhhhhhhHHH
Q 002099 124 RCLVQMILLAGPGVMISTFFLGAALKL-TFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL-GASKKLNTIIEGESLMND 201 (967)
Q Consensus 124 ~~~~~i~~la~~gv~i~~~~~~~~~~~-~~~~~~~~~~alllgails~Tdp~av~~il~~l-~~~~~l~~li~gesl~nD 201 (967)
+++++.+.+++.+++++++++++.+++ ++..|++|..|+++|+++++|||+++.++++|. +.++++++++.+|+.+||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d 153 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVIND 153 (380)
T ss_dssp ----------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhc
Confidence 999999999999999999987777774 222389999999999999999999999999655 589999999999999999
Q ss_pred HHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhhC
Q 002099 202 GTAIVVYQLFFQMV-LGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGA 280 (967)
Q Consensus 202 ~~aivlf~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~a~e~l 280 (967)
..+++++.++.+.. .+...+.......+...++.++++|.+.+++..+..++..+++..+..++++++++.|+++ |.+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a-~~~ 232 (380)
T PF00999_consen 154 IIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLA-EIL 232 (380)
T ss_dssp TTTTTTT-------------------------------------------------------------------------
T ss_pred cchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccc-ccc
Confidence 99999999988877 2333444444444444555556667777766544444433556678899999999999999 889
Q ss_pred CCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHH
Q 002099 281 DVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYI 360 (967)
Q Consensus 281 g~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (967)
|.||++|++++|+++++ ....++..+.++.+|+ .++.+++|+.+|+.++...+.. +...|...+.+++
T Consensus 233 g~s~~l~af~~Gl~~~~---~~~~~~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~------~~~~~~~~~~~~~ 300 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSN---SPFAERLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN------SPSVIILVLLLLI 300 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehcccc---ccccchhhhcccchhh---HHHhhHHhhhhccccccccccc------chhhhhhHHHHHH
Confidence 99999999999999984 2233444555666665 8999999999999998655410 1345566667777
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhccc-hhhHHHHHhhhhcccCCCCcccccccccchhhhhhhhhhhhh
Q 002099 361 FVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTL 439 (967)
Q Consensus 361 ~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~-RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl 439 (967)
..+++|+++++... ...+.+||++..++|++. ||.++++++....+... . .+.....+..++++|.
T Consensus 301 ~~~~~k~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~----~----~~~~~~~~~~~vl~t~ 367 (380)
T PF00999_consen 301 AILLGKFIGVYLAS-----RLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGI----I----SEQMFTIIIAAVLLTI 367 (380)
T ss_dssp ---------------------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred HHHHhhhceeehhh-----hhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCC----C----CHHHHHHheeeeeeHH
Confidence 77899999995433 335899999999999888 99999999987766421 1 1223455667899999
Q ss_pred hccccchHHHHhh
Q 002099 440 IVNGSTTQYILHL 452 (967)
Q Consensus 440 ~i~g~t~~~l~~~ 452 (967)
++++.+++++++|
T Consensus 368 ii~~~~~~~l~~~ 380 (380)
T PF00999_consen 368 IIAGIILSPLLRK 380 (380)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 10
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.97 E-value=6.1e-29 Score=303.94 Aligned_cols=356 Identities=17% Similarity=0.177 Sum_probs=260.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccc-cccccccChhHHHHHHhHHHh
Q 002099 32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDG-IRLWASIDPDLLLAVFLPALL 110 (967)
Q Consensus 32 ~~~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~i~l~~ll 110 (967)
+...++++++++++++.++..+++|+|+|.+++++++|+++||..+|.... .... ++......-+.+..+++.+++
T Consensus 40 ~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~---~~~~~fp~~~~~~l~~la~lGlillm 116 (832)
T PLN03159 40 SLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEV---FANTIFPLRSVMVLETMANLGLLYFL 116 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChh---hhhhcCCcchHHHHHHHHHHHHHHHH
Confidence 344566778999999999999999999999999999999999987654321 0000 100000123678899999999
Q ss_pred hhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCC---CcHHHHHHhhcccccccHHHHHHHHhhcC-CC
Q 002099 111 FESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD---WSWKTSLLLGGLLSATDPVAVVALLKELG-AS 186 (967)
Q Consensus 111 F~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~---~~~~~alllgails~Tdp~av~~il~~l~-~~ 186 (967)
|..|+++|++.+|++.+.++..|+.++++++++...+.+++...+ .....++++|.++|.|+.++++.+++|+| ++
T Consensus 117 FliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~ 196 (832)
T PLN03159 117 FLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLIN 196 (832)
T ss_pred HHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCccc
Confidence 999999999999999999999999999999876544433331101 12345788999999999999999999999 68
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-h--hhHH
Q 002099 187 KKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDT-V--IEIA 263 (967)
Q Consensus 187 ~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~-~--~~~~ 263 (967)
+++++++.+.+++||.++++++.++.++..++..... .+..++..++..+++.+++.++..|+.++..+.. . ..+.
T Consensus 197 s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~-~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~ 275 (832)
T PLN03159 197 TELGRIAMSAALVNDMCAWILLALAIALAENDSTSLA-SLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYIC 275 (832)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhH
Confidence 9999999999999999999999988776544332222 1222222222222233444455555555543322 2 3455
Q ss_pred HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccccc
Q 002099 264 LTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDK 343 (967)
Q Consensus 264 l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~ 343 (967)
+++++++++.+++ +.+|+|.++|+|++|+++++ .+..+...+++......++.|+||+.+|+.++...+.
T Consensus 276 ~il~~vl~~a~la-e~~Gl~~ilGAFlaGl~lp~------~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~--- 345 (832)
T PLN03159 276 LILTGVMISGFIT-DAIGTHSVFGAFVFGLVIPN------GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ--- 345 (832)
T ss_pred HHHHHHHHHHHHH-HHhCccHHHHHHHHhhccCC------cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc---
Confidence 6666667777788 89999999999999999974 2233455667777777899999999999999886552
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhc-cchhhHHHHHhhhhc
Q 002099 344 IFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVK 410 (967)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~v~ 410 (967)
....|..+++++++.+++|+++++ +....++++|++++.++++ ..||.+++.++....
T Consensus 346 ----~~~~~~~~~~liv~a~~gK~~g~~-----l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~ 404 (832)
T PLN03159 346 ----GPATWGLLVLVIIMASAGKIMGTI-----IIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGR 404 (832)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHH-----HHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 233455566667777889999884 3444478999999999994 889999998876543
No 11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.97 E-value=9.2e-29 Score=295.09 Aligned_cols=337 Identities=16% Similarity=0.130 Sum_probs=250.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 34 ~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
.++++.+.+++.++.++..++||+|+|.+++++++|+++||..++... + ....+.+.++++.+++|..
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~------~------~~~i~~laelGvv~LlF~i 71 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT------D------VESILHFAEFGVVLMLFVI 71 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC------C------HHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999999999999999998654321 0 1123568899999999999
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcC-CCcchhhh
Q 002099 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTI 192 (967)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~-~~~~l~~l 192 (967)
|+++|++.+|+..+.++.++..++++++++++.+.++ + |++|..++++|++++.|+++.++++++|.+ .+++.++.
T Consensus 72 GLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~-~--g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~ 148 (621)
T PRK03562 72 GLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCML-L--GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRS 148 (621)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Confidence 9999999999999999999999999998876655444 3 889999999999999999999999999999 78999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHcc-CCcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcc--cchhhHHHHHHH
Q 002099 193 IEGESLMNDGTAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGI-ASVLWLGFIFN--DTVIEIALTLAV 268 (967)
Q Consensus 193 i~gesl~nD~~aivlf~~~~~~~~~-~~~~~~~~~~~~~~~~~g~i~~G~~~g~-~~~~~l~~~~~--~~~~~~~l~l~~ 268 (967)
..|-.++||..+++++.+...+... +..+........... ++.+++.+++|+ +..+++++..+ .+......++.+
T Consensus 149 ~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~l 227 (621)
T PRK03562 149 AFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKV-AGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFL 227 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 9999999999999988877555432 121222211111111 122222233333 33344444322 233445666777
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccC
Q 002099 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (967)
Q Consensus 269 ~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~ 348 (967)
++++.+++ +.+|+|+++|+|++|+++++ +.++++.+..++. +..++.++||+.+|+.++...+.
T Consensus 228 v~~~a~la-~~~Gls~~lGAFlAGl~l~~---~~~~~~le~~i~p----f~~lll~lFFi~vG~~id~~~l~-------- 291 (621)
T PRK03562 228 VFGFGLLM-EEVGLSMALGAFLAGVLLAS---SEYRHALESDIEP----FKGLLLGLFFIAVGMSIDFGTLL-------- 291 (621)
T ss_pred HHHHHHHH-HHhCccHHHHHHHHHHHhcC---CccHHHHHHHHHH----HHHHHHHHHHHHhhhhccHHHHH--------
Confidence 78888888 89999999999999999985 2333333333444 44678899999999999875541
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhc-cchhhHHHHHhhh
Q 002099 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLS 408 (967)
Q Consensus 349 ~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~ 408 (967)
..|..++.+.++.+++|+++++...++ .+.+++++..++++ ..+|..++.++..
T Consensus 292 -~~~~~il~~~~~~~~~K~~~~~~~~~~-----~g~~~~~a~~~gl~L~~~Gef~~vl~~~ 346 (621)
T PRK03562 292 -ENPLRILILLLGFLAIKIAMLWLLARP-----LGVPRKQRRWFAVLLGQGGEFAFVVFGA 346 (621)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHhHHHHHHHHHhccccHHHHHHHH
Confidence 234444555566789999998644333 68899999999995 6699999887754
No 12
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.97 E-value=1e-28 Score=294.33 Aligned_cols=337 Identities=18% Similarity=0.166 Sum_probs=249.6
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhh
Q 002099 33 PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFE 112 (967)
Q Consensus 33 ~~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~ 112 (967)
.++.+..+.+++.++.++.++++|+|+|.+++++++|+++||..++..+ + ....+.+.++++.+++|.
T Consensus 3 ~~~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~------~------~~~i~~laelGvv~LLF~ 70 (601)
T PRK03659 3 GSDLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS------D------VDEILHFSELGVVFLMFI 70 (601)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC------c------HHHHHHHHHHHHHHHHHH
Confidence 4566777888888999999999999999999999999999998654321 0 112346788999999999
Q ss_pred hhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcC-CCcchhh
Q 002099 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNT 191 (967)
Q Consensus 113 ~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~-~~~~l~~ 191 (967)
.|+++|++.+|+..+.++.++..++++++++++...+++ |++|..++++|.+++.||++.+.++++|.| .+++.++
T Consensus 71 iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~---g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~ 147 (601)
T PRK03659 71 IGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLT---DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ 147 (601)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 999999999999999999999999999998777665543 889999999999999999999999999999 6788999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccc--chhhHHHHHHH
Q 002099 192 IIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIFND--TVIEIALTLAV 268 (967)
Q Consensus 192 li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g-~~~~~~l~~~~~~--~~~~~~l~l~~ 268 (967)
+..+..++||..+++++.++..+...+... ........ . +..++..+++| ++..+++++..+. +...+..++.+
T Consensus 148 ~~l~vll~~Di~~i~ll~l~~~l~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~ 224 (601)
T PRK03659 148 LGFSVLLFQDLAVIPALALVPLLAGSADEH-FDWMKIGM-K-VLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLL 224 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 999999999999988887765544322221 11111111 1 11111122223 3333444443322 23444555666
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccC
Q 002099 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (967)
Q Consensus 269 ~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~ 348 (967)
++++.+++ +.+|+|+++|+|++|+++++ +.++++.+..++.| ..++.++||+.+|+.++...+
T Consensus 225 vl~~a~l~-~~~Gls~~LGAFlaGl~l~~---s~~~~~l~~~i~pf----~~lll~lFFi~vGm~id~~~l--------- 287 (601)
T PRK03659 225 VLGSALFM-DALGLSMALGTFIAGVLLAE---SEYRHELEIAIEPF----KGLLLGLFFISVGMALNLGVL--------- 287 (601)
T ss_pred HHHHHHHH-HHhCccHHHHHHHHHHHhcC---CchHHHHHHHHHHH----HHHHHHHHHHHHhhhccHHHH---------
Confidence 67777777 89999999999999999986 23334444445555 457889999999999987654
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhh-ccchhhHHHHHhhhh
Q 002099 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVW-SGLRGAVALSLSLSV 409 (967)
Q Consensus 349 ~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~-~g~RG~v~lalal~v 409 (967)
...|..++.+.++.+++|+++++... ..++.+|++++.++. .+.||..++.++...
T Consensus 288 ~~~~~~il~~~~~~l~~K~~~~~~~~-----~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a 344 (601)
T PRK03659 288 YTHLLWVLISVVVLVAVKGLVLYLLA-----RLYGLRSSERMQFAGVLSQGGEFAFVLFSAA 344 (601)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCCHHHHHHHHHHHhccccHHHHHHHHH
Confidence 13455556666778899999985433 346889999998886 588999999887653
No 13
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.96 E-value=5.1e-27 Score=279.84 Aligned_cols=340 Identities=18% Similarity=0.127 Sum_probs=239.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhh
Q 002099 35 DAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (967)
Q Consensus 35 ~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g 114 (967)
..+..++++++++.+++.++||+++|.+++++++|+++||..++..+ + ....+.+.++++.+++|..|
T Consensus 6 ~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~------~------~~~~~~la~lGli~llF~~G 73 (558)
T PRK10669 6 PLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA------D------TKLAPELAELGVILLMFGVG 73 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc------c------hHHHHHHHHHHHHHHHHHhH
Confidence 44555688899999999999999999999999999999998654321 0 11246788999999999999
Q ss_pred hcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcC-CCcchhhhh
Q 002099 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTII 193 (967)
Q Consensus 115 ~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~-~~~~l~~li 193 (967)
+++|++.+|+..+..+..++.++++++++ +++..+.+ +++|..++++|+++|.|+++++.++++|.| ++++.++++
T Consensus 74 le~d~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~ 150 (558)
T PRK10669 74 LHFSLKDLMAVKSIAIPGAIAQIAVATLL-GMALSAVL--GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIA 150 (558)
T ss_pred hcCCHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHH
Confidence 99999999998777776677777776654 44444444 799999999999999999999999999999 799999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHc---cCCcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch--hhHHH
Q 002099 194 EGESLMNDGTAIVVYQLFFQMVL---GKSFGWGA----IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTV--IEIAL 264 (967)
Q Consensus 194 ~gesl~nD~~aivlf~~~~~~~~---~~~~~~~~----~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~--~~~~l 264 (967)
.|.++++|..+++++.++..+.. ++..+... +...+...++..++++++.+++..+++++..+... .....
T Consensus 151 l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~ 230 (558)
T PRK10669 151 IGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLS 230 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 99999999999888877655432 12222211 11111111122222333444444455555433322 33344
Q ss_pred HHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccc
Q 002099 265 TLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKI 344 (967)
Q Consensus 265 ~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~ 344 (967)
+++++++..+.+++.+|+|+++|+|++|+++++ +...++..+ . ...+..++.++||+.+|+.++...+.
T Consensus 231 ~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~---~~~~~~~~~---~-~~~~~~~f~plFFv~~G~~~d~~~l~---- 299 (558)
T PRK10669 231 VLALALGIAFGAVELFDVSFALGAFFAGMVLNE---SELSHRAAH---D-TLPLRDAFAVLFFVSVGMLFDPMILI---- 299 (558)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC---ChhHHHHHH---H-HhhHHHHHHHHHHHHhhhhcCHHHHH----
Confidence 445555444333389999999999999999975 112111111 1 22245678999999999999876441
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhc-cchhhHHHHHhhhhc
Q 002099 345 FQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVK 410 (967)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~v~ 410 (967)
..+..++.+.++.+++|+++++...+ .++.+||+++.++.+ ..||..++.++....
T Consensus 300 -----~~~~~~~~~~~~~~v~K~~~~~~~~~-----~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~ 356 (558)
T PRK10669 300 -----QQPLAVLATLAIIVFGKSLAAFFLVR-----LFGHSRRTALTIAASLAQIGEFAFILAGLGM 356 (558)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCChhhHHHHHHHHhcccchHHHHHHHHH
Confidence 22333445566678899999854333 367899999999995 779999998776543
No 14
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-26 Score=261.35 Aligned_cols=340 Identities=19% Similarity=0.202 Sum_probs=250.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 34 ~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
...+..+.++++++.+..++++|+|+|.+++++++|+++||..++... + ....-+.+.++++.+++|.+
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~------~-----~~~~i~~laelGvi~LlF~~ 73 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLII------E-----SSEIIELLAELGVVFLLFLI 73 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccC------C-----chHHHHHHHHHhHHHHHHHH
Confidence 445777888899999999999999999999999999999994322110 0 01123568899999999999
Q ss_pred hhcCCHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcC-CCcchhh
Q 002099 114 SFAMEVHQIKRCLVQ-MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNT 191 (967)
Q Consensus 114 g~~~~~~~l~~~~~~-i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~-~~~~l~~ 191 (967)
|+|.|++++|++.++ .+..+..++.+++.+.....+..+ +++|..++++|++++.||...++++++|+| .+++.++
T Consensus 74 GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~ 151 (397)
T COG0475 74 GLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL--GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQ 151 (397)
T ss_pred HHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 999999999999999 666666666666554322222223 899999999999999999999999999998 8999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhc--ccchhhHHHHHHH
Q 002099 192 IIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIF--NDTVIEIALTLAV 268 (967)
Q Consensus 192 li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g-~~~~~~l~~~~--~~~~~~~~l~l~~ 268 (967)
++.+..+++|..+++++.+...+..++..+...+.......... .++-+..| ++..+++++.. +++...+..++++
T Consensus 152 ~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f-~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i 230 (397)
T COG0475 152 LILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAF-LALLLLLGRYLLPPLFRRVAKTESSELFILFVLLL 230 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999888766555443332222222111 11222224 44445555544 3444667788888
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHH-HHHHHHHHHHhHHHhhhhccccccccc
Q 002099 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAY-IANTLIFILSGVVIAEGILGNDKIFQN 347 (967)
Q Consensus 269 ~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Fv~~G~~i~~~~l~~~~~~~~ 347 (967)
++.+.+++ |.+|.|.++|+|++|++++.. ..+ ++.+++-.+.+.+ ++.|+||+.+|+.+|...+.
T Consensus 231 ~l~~a~l~-e~~gls~ilGAFlaGl~ls~~---~~~---~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~------- 296 (397)
T COG0475 231 VLGAAYLA-ELLGLSMILGAFLAGLLLSES---EYR---KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL------- 296 (397)
T ss_pred HHHHHHHH-HHhChhHHHHHHHHHHHhccc---ccc---hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh-------
Confidence 88888898 899999999999999999852 222 1334444455555 99999999999999987762
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhc-cchhhHHHHHhhh
Q 002099 348 HGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLS 408 (967)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~ 408 (967)
..+..++.+..+.++.|.++++...+. .|.++|.+...+++ ..+|..+++++..
T Consensus 297 --~~~~~~l~~~~~~i~~K~~~~~~~~~~-----~g~~~~~~~~~g~~~~~~ge~~~v~~~~ 351 (397)
T COG0475 297 --ENLLLILLLVALAILGKILGAYLAARL-----LGFSKRLALGIGLLLRQGGEFAFVLAGI 351 (397)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCcHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 334446777788889999988543333 45778888887775 4477777776654
No 15
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.96 E-value=2.5e-27 Score=257.50 Aligned_cols=268 Identities=17% Similarity=0.178 Sum_probs=212.7
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHH
Q 002099 45 VLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKR 124 (967)
Q Consensus 45 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~ 124 (967)
+++.+.+.++||+++|.+++++++|+++||...+..+ + ...-+.+..+++.+++|.+|+++|++.+|+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~------~------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~ 69 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS------N------VEGVNHLAEFGVILLMFLIGLELDLERLWK 69 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC------C------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566778889999999999999999999997543221 0 011356788999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcC-CCcchhhhhhhhhhHHHHH
Q 002099 125 CLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTIIEGESLMNDGT 203 (967)
Q Consensus 125 ~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~-~~~~l~~li~gesl~nD~~ 203 (967)
+++.+..++..+++++++++++...+.+ +++|..|+++|+++++||++++.++++|++ .+++.++++.+++++||..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~ 147 (273)
T TIGR00932 70 LRKAAFGVGVLQVLVPGVLLGLLLGHLL--GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIA 147 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHH
Confidence 9999999999999999777777666665 789999999999999999999999999999 5889999999999999999
Q ss_pred HHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhhHHHHHHHHHHHHHHHHhhCC
Q 002099 204 AIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN--DTVIEIALTLAVSYIAFFTAQEGAD 281 (967)
Q Consensus 204 aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~--~~~~~~~l~l~~~~~~~~~a~e~lg 281 (967)
+++++.++.....+++.+.......+....++.++.+++.++...+..++..+ +.......++.++++.++++ |.+|
T Consensus 148 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la-~~~g 226 (273)
T TIGR00932 148 VVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFA-DLLG 226 (273)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH-HHhC
Confidence 99999998877654433333343444445555556677777776666665543 33456778888888888888 8999
Q ss_pred CcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002099 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVI 334 (967)
Q Consensus 282 ~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i 334 (967)
.|+++|++++|+++++.. ..+. +.+..+.+..++.|+||+.+|+++
T Consensus 227 ~s~~lgaf~aGl~~~~~~------~~~~-l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 227 LSMALGAFLAGVVLSESE------YRHK-LESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred CcHHHHHHHHHHHHcCCc------hHHH-HHHHHHhHHHHHHHHHHHHhCccC
Confidence 999999999999998621 1122 444444455899999999999875
No 16
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.1e-27 Score=238.18 Aligned_cols=394 Identities=17% Similarity=0.192 Sum_probs=293.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCH
Q 002099 40 VGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEV 119 (967)
Q Consensus 40 ~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~ 119 (967)
-++..+.+..+..+-+++-+...+.-.+.|+++||...+..++.. -++. +.-..-+.-+.|.+-.|.+|.+++.
T Consensus 19 g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~-wgn~-----d~it~ei~RvvLcvqvfava~eLPr 92 (467)
T KOG4505|consen 19 GGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS-WGNK-----DYITYEISRVVLCVQVFAVAMELPR 92 (467)
T ss_pred hhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc-ccCc-----chhhhhhhhhhHhHHHHHHHHhccH
Confidence 456677788888888899999999999999999998765443111 1100 0112346677899999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhc----CCCcchhhhhhh
Q 002099 120 HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL----GASKKLNTIIEG 195 (967)
Q Consensus 120 ~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l----~~~~~l~~li~g 195 (967)
..+.++|+.++++-.+-+.+..++.+..+|.++| ++++..++++++.+++|||+...++..+- ++|.|++.++.+
T Consensus 93 ~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p-~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~A 171 (467)
T KOG4505|consen 93 AYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIP-NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAA 171 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHH
Confidence 9999999999999999999988888888999998 89999999999999999999999998642 389999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCCc-CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cchhhHHHHHHH
Q 002099 196 ESLMNDGTAIVVYQLFFQMVLGKSF-GWG--AIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALTLAV 268 (967)
Q Consensus 196 esl~nD~~aivlf~~~~~~~~~~~~-~~~--~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~----~~~~~~~l~l~~ 268 (967)
||..||++|+.++.+.+.+...+.. ..+ .+...++.....|.++|.++|++....+++..+ |......+-+++
T Consensus 172 ESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl 251 (467)
T KOG4505|consen 172 ESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVL 251 (467)
T ss_pred hcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999999999888887753321 111 122333344556677999999998887776543 344556777788
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccC
Q 002099 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (967)
Q Consensus 269 ~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~ 348 (967)
++++..++ +.+|++..+..|.||++++..+. ++.+++ -.+.-+.+..+++..||++.|..+|...+..... .
T Consensus 252 ~lfc~gig-tiiGvddLl~sFfAGi~Fswd~w--Fsk~t~--~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~---g 323 (467)
T KOG4505|consen 252 ALFCMGIG-TIIGVDDLLVSFFAGIVFSWDEW--FSKKTK--ESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVE---G 323 (467)
T ss_pred HHHHhhhh-heechhHHHHHHHhhhhcchhHH--hhhhhh--hccHHHHHHHHHHHHHHHHhccccchhhcCCccc---C
Confidence 88888888 89999999999999999987433 333332 2355666778999999999999999876632211 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccCCCC-c---cccc---
Q 002099 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGS-S---LITS--- 421 (967)
Q Consensus 349 ~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~-~---~~~~--- 421 (967)
...|..+++-+..+++-|+..++.+.|+.+-. .+|||+++++|.|+-|.-++-.|+......... | ....
T Consensus 324 l~vwrlvilsi~iif~RRip~v~l~kp~iPdi---kswkEALFvGhFGPIGVgAly~allar~~le~~ep~~~i~~~e~~ 400 (467)
T KOG4505|consen 324 LPVWRLVILSITIIFIRRIPAVYLMKPLIPDI---KSWKEALFVGHFGPIGVGALYYALLARKELETLEPEKSIYESETV 400 (467)
T ss_pred chHHHHHHHHHHHHHhcccceEEEeccCCcch---hhHHHHHHhccCCCccHHHHHHHHHHHhhhccCCcccccCCcccc
Confidence 33455555556666667788888777776544 589999999999999999988876543221100 0 0000
Q ss_pred --ccccchhhhhhhhhhhhhhccccchHHHHh
Q 002099 422 --ETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451 (967)
Q Consensus 422 --~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~ 451 (967)
...+.+..++..+|+.|++++|.+.+.+.-
T Consensus 401 ~w~li~~iwpivsf~vlsSIiVHG~sv~~~tl 432 (467)
T KOG4505|consen 401 FWTLIEIIWPIVSFTVLSSIIVHGSSVAMYTL 432 (467)
T ss_pred chhhhhhhhhhhHHHHHHHHHhccchhhHHHH
Confidence 111235556667899999999999987754
No 17
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.86 E-value=2.2e-21 Score=226.16 Aligned_cols=209 Identities=17% Similarity=0.164 Sum_probs=188.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccchHhHHHHHHHHHHHHHHhhc
Q 002099 647 VVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKV--GLLEEKEMLHLHDAVQSDLKRLLR 724 (967)
Q Consensus 647 ~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~~~--G~l~~~e~~~l~~~i~~~l~~l~~ 724 (967)
.+|+++++-++......++++.++.++.++|+.++++..++++.++|.++-|+. |+-+++-.+.+++++++++++..+
T Consensus 338 ~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 338 YLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred HHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 467888888888888899999999999999999999999999999999988876 654455478999999999998876
Q ss_pred CCCCCCCCChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeee
Q 002099 725 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPV 804 (967)
Q Consensus 725 ~~~~~~~~~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~ 804 (967)
. ++++++|+|+++|+..++.|+..++...+.|||+|++|||+++.||||.+|.+++...+.+ .......
T Consensus 418 ~----------~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g-~~~~~~~ 486 (727)
T KOG0498|consen 418 L----------DLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG-GFFVVAI 486 (727)
T ss_pred H----------HHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC-ceEEEEE
Confidence 4 7899999999999999999999999999999999999999999999999999999887744 5666779
Q ss_pred ccCCCeec-hhhhhcC-CcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 805 FTHGSNLG-LYEVLIG-KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 805 l~~G~~fG-e~~ll~~-~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
+++||+|| |...... .|.++||+|.|.|+++.|++++|..+++.+|.+..+++++....+..
T Consensus 487 L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~ 550 (727)
T KOG0498|consen 487 LGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSH 550 (727)
T ss_pred ecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhh
Confidence 99999999 7777766 78899999999999999999999999999999999999977666664
No 18
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.3e-19 Score=181.82 Aligned_cols=366 Identities=18% Similarity=0.212 Sum_probs=240.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 34 ~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
+..+-.+...+.++.+.+.++.|+++|+.|+++++|++.||..+|... + .--...+.++++.+++|..
T Consensus 5 tpli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva------d------~~La~~LAelGViLLmFgv 72 (408)
T COG4651 5 TPLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA------D------QTLAPELAELGVILLMFGV 72 (408)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc------c------hhHHHHHHHhhHHHHHHhc
Confidence 444555677788899999999999999999999999999998765442 1 1113457899999999999
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcC-CCcch
Q 002099 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFF---LGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKL 189 (967)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~---~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~-~~~~l 189 (967)
|++.+.+++.....- |++|.+....+ .|..+.+.. |||+...+++|-.+|..++++.+.-++|.+ ++++-
T Consensus 73 GLhfslkdLLavk~i----AipgAl~qia~at~lg~gL~~~l--gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~r 146 (408)
T COG4651 73 GLHFSLKDLLAVKAI----AIPGALAQIALATLLGMGLSSLL--GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQR 146 (408)
T ss_pred chheeHHHHhhHHHH----hcchHHHHHHHHHHHHhHHHHHc--CCCcccceeeeehhhhHHHHHHHHHHHHhccccccC
Confidence 999999998764333 34444433322 244444444 999999999999999999999999999988 78999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHc---cCCcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccc--h
Q 002099 190 NTIIEGESLMNDGTAIVVYQLFFQMVL---GKSFGWGAII----KFLAQVSLGAVGMGLAFGIASVLWL-GFIFNDT--V 259 (967)
Q Consensus 190 ~~li~gesl~nD~~aivlf~~~~~~~~---~~~~~~~~~~----~~~~~~~~g~i~~G~~~g~~~~~~l-~~~~~~~--~ 259 (967)
+++..|--++.|...++.....-+++. .+...+.... ....++ ...+++++++|.-...|+ .+..... .
T Consensus 147 G~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv-~af~alml~VgrrviPw~le~~a~tGsrE 225 (408)
T COG4651 147 GRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKV-AAFIAIMLVVGRRLIPWILERVAATGSRE 225 (408)
T ss_pred ceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 999999999999776655544333321 2222222211 122232 334557778887655444 4433222 2
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 002099 260 IEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGIL 339 (967)
Q Consensus 260 ~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l 339 (967)
......+++++...+.+.+.+|+|.-+|+|++|++++. +..+++..+..-+..+ .+..+||+.+||..++.++
T Consensus 226 lf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e---selshraa~~slpLrd----aFaVlFFvsVGmlf~P~~l 298 (408)
T COG4651 226 LFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE---SELSHRAAEDSLPLRD----AFAVLFFVSVGMLFDPMIL 298 (408)
T ss_pred HHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc---hhhhHHHHHhccCHHH----HHHHHHHHHhhhhcCcHHh
Confidence 33455566666666666699999999999999999985 3334443433334444 7778999999999987654
Q ss_pred ccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhcc-chhhHHHHHhhhhcccCCCCcc
Q 002099 340 GNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSG-LRGAVALSLSLSVKRSSGGSSL 418 (967)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g-~RG~v~lalal~v~~~~~~~~~ 418 (967)
- .+...++..+++++.+|-+..|.. .+. ++.+.|.++.++.+- --|..++.++-.--.. +.
T Consensus 299 ~---------~~pl~vlatllii~~gKs~aaf~i---vr~--Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l----~l 360 (408)
T COG4651 299 I---------QQPLAVLATLLIILFGKSVAAFFI---VRA--FGHPVRTALTISASLAQIGEFSFILAGLGIKL----NL 360 (408)
T ss_pred h---------cchHHHHHHHHHHHhhhHHHHHHH---HHH--hCCcchHHHHHHHHHHhhhhHHHHHHHHhhhh----cc
Confidence 2 223345556666777887766432 223 456777888777753 3677777665321111 11
Q ss_pred cccccccchhhhhhhhhhhhhhccccchH
Q 002099 419 ITSETGTLFVFFTGGIVFLTLIVNGSTTQ 447 (967)
Q Consensus 419 ~~~~~~~~i~~~~~~vvl~Tl~i~g~t~~ 447 (967)
.++..+++++ ...++|+++|.....
T Consensus 361 lp~~gr~Lvl----agailsIl~nPllf~ 385 (408)
T COG4651 361 LPEAGRDLVL----AGAILSILLNPLLFA 385 (408)
T ss_pred CcHHHHHHHH----HHHHHHHHHhHHHHH
Confidence 2233344433 356677777654433
No 19
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.6e-19 Score=213.85 Aligned_cols=389 Identities=15% Similarity=0.087 Sum_probs=276.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHh
Q 002099 31 GNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALL 110 (967)
Q Consensus 31 ~~~~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ll 110 (967)
.....+++++.+++++..+...++|++|+|..+..+++||++||..++..... ....++.....--+.+..++..+++
T Consensus 19 ~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~--~~~~f~~~s~~~l~~~~~lg~~~f~ 96 (769)
T KOG1650|consen 19 YALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSY--MNTIFPKSSMIVLELLANLGFLFFL 96 (769)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhh--hhcccccchHHHHHHHHHHHHHHHH
Confidence 34455677788999999999999999999999999999999999876543211 1111111011112567778889999
Q ss_pred hhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc----CCCCc----HHHHHHhhcccccccHHHHHHHHhh
Q 002099 111 FESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF----PYDWS----WKTSLLLGGLLSATDPVAVVALLKE 182 (967)
Q Consensus 111 F~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~----~~~~~----~~~alllgails~Tdp~av~~il~~ 182 (967)
|..|+++|.+.++++.+....+|+.++++++........... +...+ ...-...+...|.|+...+..++.|
T Consensus 97 Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~e 176 (769)
T KOG1650|consen 97 FLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAE 176 (769)
T ss_pred HHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHH
Confidence 999999999999999999999999999999765333333221 00111 1144666788999999999999999
Q ss_pred cC-CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch--
Q 002099 183 LG-ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTV-- 259 (967)
Q Consensus 183 l~-~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~-- 259 (967)
++ .+++++++....+++||..++.++.+..........+.......+...++..++.-+++-.+..|+.++..++..
T Consensus 177 Lkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~ 256 (769)
T KOG1650|consen 177 LKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVS 256 (769)
T ss_pred hhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccc
Confidence 99 789999999999999999999999888887765543333222322222222232333445555666666543322
Q ss_pred -hhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 002099 260 -IEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGI 338 (967)
Q Consensus 260 -~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~ 338 (967)
.++..+++..+++....+..-+.++++|+++.|+.+.+ -.|-.....+++-.....++.|++|+..|+..+...
T Consensus 257 ~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~-----~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~ 331 (769)
T KOG1650|consen 257 DAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPH-----GPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISR 331 (769)
T ss_pred cceehhhHHHHHHHHHHHHHhccccccchhheEEEecCC-----CCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHH
Confidence 45566666666666666344448999999999999865 234446667778888888999999999999987654
Q ss_pred cccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhc-cchhhHHHHHhhhhcccCCCCc
Q 002099 339 LGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKRSSGGSS 417 (967)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lalal~v~~~~~~~~ 417 (967)
+ ..|...........++|++++. ...+.+++++|+++.++.. ..||.+.+..-....+.
T Consensus 332 i----------~~~~~~~~~i~~~~~~K~l~t~-----~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~----- 391 (769)
T KOG1650|consen 332 I----------NKWGALIRTILIFGAVKLLSTL-----GTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDR----- 391 (769)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhc-----
Confidence 4 1177777777888889999884 3334578999999999995 66999998876553332
Q ss_pred ccccccccchhhhhhhhhhhhhhccccchHHHHhhc
Q 002099 418 LITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLL 453 (967)
Q Consensus 418 ~~~~~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~~l 453 (967)
+.+-..++++.++..++++..+|+++..+
T Consensus 392 -------~~~~~~~f~~~vl~alv~t~I~~~~l~~~ 420 (769)
T KOG1650|consen 392 -------KILSDEGFTVMVLMALVSTFITPPLLMFL 420 (769)
T ss_pred -------CCcccchHHHHHHHHHHHHhhHHHHHHHh
Confidence 22334455566777777777777777653
No 20
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.79 E-value=7e-19 Score=187.30 Aligned_cols=200 Identities=13% Similarity=0.185 Sum_probs=158.9
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++..|+|+.+++++++.+.+..+.+.|++|++|+++||+++++|+|.+|.|+++... +|++..+..+++|++||+.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILA 84 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhH
Confidence 368999999999999999999999999999999999999999999999999999999876 5566778899999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHH----HHHHhccc
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMR----ALIAERSK 890 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~----~l~~~~~~ 890 (967)
+++.+.|+.++++|.++|+++.||+++|.+++.++|.+...+.+.+..++.... +...++...+.. .++.....
T Consensus 85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rla~~Ll~~~~ 162 (236)
T PRK09392 85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLV--KSLKNQKLRSSAERLANYLLKQSL 162 (236)
T ss_pred HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999988877622 233333222322 22201100
Q ss_pred cccccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccce
Q 002099 891 MTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETF 956 (967)
Q Consensus 891 ~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~ 956 (967)
....+..+.++ -++++ |++-.|++++++||.++.+++.|+ ..+.+++
T Consensus 163 --~~~~~~~~~i~---------------~t~~~-iA~~lG~tretvsR~l~~L~~~gl-~~~~~~i 209 (236)
T PRK09392 163 --RQGGADVVTLP---------------YEKRV-LASYLGMTPENLSRAFAALASHGV-HVDGSAV 209 (236)
T ss_pred --ccCCCcEEEee---------------CCHHH-HHHHhCCChhHHHHHHHHHHhCCe-EeeCCEE
Confidence 01111112122 22445 588899999999999999999997 5555444
No 21
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.79 E-value=2e-18 Score=186.34 Aligned_cols=200 Identities=13% Similarity=0.203 Sum_probs=165.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-hHh-HHHHHHHHHHHHHHhhc
Q 002099 647 VVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLE-EKE-MLHLHDAVQSDLKRLLR 724 (967)
Q Consensus 647 ~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~~~G~l~-~~e-~~~l~~~i~~~l~~l~~ 724 (967)
.|++...+.+.++...-.++|..+..+++||+-|+++..+..++.++..++|.++... |+| .+.|++.+..++.--.+
T Consensus 226 tIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh 305 (536)
T KOG0500|consen 226 TIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVH 305 (536)
T ss_pred hhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHH
Confidence 3455555556666666788999999999999999999999999999999999766654 444 23444444444442111
Q ss_pred CCCCCCCCChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeee
Q 002099 725 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPV 804 (967)
Q Consensus 725 ~~~~~~~~~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~ 804 (967)
.+-|+++++|++..+..+.++.-.++++.|.|||+|||+||.+..||+|.+|.+.+...+ |.. ....
T Consensus 306 ----------~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD--g~t-~~~~ 372 (536)
T KOG0500|consen 306 ----------LDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD--GVT-VFVT 372 (536)
T ss_pred ----------HHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC--CcE-EEEE
Confidence 367999999999999999999999999999999999999999999999999999997543 433 3358
Q ss_pred ccCCCeechhhhh------cCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHH
Q 002099 805 FTHGSNLGLYEVL------IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQ 859 (967)
Q Consensus 805 l~~G~~fGe~~ll------~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~ 859 (967)
+.+|++|||.+++ .|.+|+|+++....+.+++++++|+-+.++++|+-+..+.++
T Consensus 373 L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 373 LKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred ecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999988 367899999999999999999999999999999988777644
No 22
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.78 E-value=8.7e-19 Score=191.14 Aligned_cols=212 Identities=16% Similarity=0.220 Sum_probs=179.9
Q ss_pred hhhhcCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HccccchHhHHHHHH
Q 002099 635 LHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLE-KVGLLEEKEMLHLHD 713 (967)
Q Consensus 635 l~~f~g~~~v~~~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~-~~G~l~~~e~~~l~~ 713 (967)
+.+|+-+..+...+|+++++-+..|.+.-.++|..+.+...+|+...++..+++++|.++++-| +++.+||++ +.+
T Consensus 434 ~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~---ll~ 510 (815)
T KOG0499|consen 434 LLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESD---LLK 510 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHH---HHH
Confidence 3455566678888999999999999999999999999999999999999999999999999999 578999985 333
Q ss_pred HHHHHHHH---hhcCCCCCCCCChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEE
Q 002099 714 AVQSDLKR---LLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 790 (967)
Q Consensus 714 ~i~~~l~~---l~~~~~~~~~~~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v 790 (967)
.+..+++. +.-+ -+++.++.+|++++...+.++...++...|-|||+||+.||.+..||+|..|.|.|
T Consensus 511 ~LP~klq~dlAi~V~---------y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQV 581 (815)
T KOG0499|consen 511 TLPTKLQLDLAIDVN---------YSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQV 581 (815)
T ss_pred hcchhheeeeeEEee---------hhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEE
Confidence 33333331 1111 25789999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCceeEeeeccCCCeechhhhh---cCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHH
Q 002099 791 TSKSIRNKHSLHPVFTHGSNLGLYEVL---IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 860 (967)
Q Consensus 791 ~~~~~~g~~~~~~~l~~G~~fGe~~ll---~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~ 860 (967)
.... +|+. ++.++..|++|||+++| .|.+|+|+|+|...|.++.++++++.+++..+|+-+.-+.++.
T Consensus 582 lGGp-~~~~-Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkA 652 (815)
T KOG0499|consen 582 LGGP-DGTK-VLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKA 652 (815)
T ss_pred ecCC-CCCE-EEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHH
Confidence 8654 4444 45799999999999998 4678999999999999999999999999999998665544443
No 23
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.78 E-value=8.5e-18 Score=209.57 Aligned_cols=193 Identities=10% Similarity=0.131 Sum_probs=169.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHh-HHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhhC
Q 002099 663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH 741 (967)
Q Consensus 663 L~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~~~G~l~~~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~ 741 (967)
-.+++.+..++.++|+.++++..+.++.++|+++.++..-.++++ .+++.+.+..++..... .++++++
T Consensus 310 ~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~----------~~~l~~~ 379 (823)
T PLN03192 310 TMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLF----------LPVVEKV 379 (823)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHH----------HHHHhhC
Confidence 355677778899999999999999999999999888765555554 45666666666654332 3578999
Q ss_pred CCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCc
Q 002099 742 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP 821 (967)
Q Consensus 742 ~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~ 821 (967)
|+|++++++.+.++...++++.|.|||.|++|||.++++|||.+|.|++... .++++.++..+++|++|||.+++.+.|
T Consensus 380 ~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~-~~~~e~~l~~l~~Gd~FGE~~~l~~~p 458 (823)
T PLN03192 380 YLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS-EGEKERVVGTLGCGDIFGEVGALCCRP 458 (823)
T ss_pred cchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe-cCCcceeeEEccCCCEecchHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999864 456777788999999999999999999
Q ss_pred ceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 822 YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 822 ~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
++++++|.++|+++.|++++|.++++++|+....+++++..+..+
T Consensus 459 ~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~ 503 (823)
T PLN03192 459 QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKE 503 (823)
T ss_pred CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999998887664
No 24
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.75 E-value=5.6e-18 Score=177.23 Aligned_cols=199 Identities=15% Similarity=0.097 Sum_probs=153.4
Q ss_pred CCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCC-cce
Q 002099 745 RELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK-PYM 823 (967)
Q Consensus 745 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~-~~~ 823 (967)
+.+++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.++++..+.+|++.....+++|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 4589999999999999999999999999999999999999999999998888999999999999999999998864 688
Q ss_pred eEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhc-cccccccCCeEEEe
Q 002099 824 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMTTCLRGEIIEI 902 (967)
Q Consensus 824 atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~-~~~~~~~~~~~i~~ 902 (967)
++++|.++|+++.||+++|.++++++|++...+.+.++.++... .+....+...+..+-+... ...... .+. ..
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~Rl~~~L~~l~~~-~~~-~~- 160 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNT--SRKVGDLAFLDVTGRIAQTLLDLAKQ-PDA-MT- 160 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHHhcChhhHHHHHHHHHHHh-cCC-cC-
Confidence 99999999999999999999999999999999999888887651 2233333333333211000 001000 000 00
Q ss_pred ecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCccccee
Q 002099 903 PYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFY 957 (967)
Q Consensus 903 ~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~ 957 (967)
... + ..-..++++ |++-.|++|+++||.++.++++|+++.+-+.+.
T Consensus 161 -~~~-~------~~~~~t~~~-lA~~lG~tr~tvsR~l~~l~~~gii~~~~~~i~ 206 (211)
T PRK11753 161 -HPD-G------MQIKITRQE-IGRIVGCSREMVGRVLKMLEDQGLISAHGKTIV 206 (211)
T ss_pred -CCC-c------eecCCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 000 0 111233556 588999999999999999999999988766543
No 25
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.71 E-value=3.8e-17 Score=173.87 Aligned_cols=205 Identities=12% Similarity=0.066 Sum_probs=156.1
Q ss_pred hhhCCCCCCCChhhhHHhhhccE-EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhh
Q 002099 738 ISAHPLLRELPPSVREPLELSTK-EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 816 (967)
Q Consensus 738 l~~~~lF~~l~~~~l~~l~~~~~-~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~l 816 (967)
+++.+.|..+++++++.+.+... .+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.+...+.||++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 55566666799999999999886 57899999999999999999999999999999999999998889999999999776
Q ss_pred hcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHH----HHHHHHhccccc
Q 002099 817 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQD----MRALIAERSKMT 892 (967)
Q Consensus 817 l~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~----l~~l~~~~~~~~ 892 (967)
+. .+++++++|.++|+++.||++.|.+++.++|++...+++.+..++... .+....+...+ +..++.....
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~Rla~~L~~l~~-- 169 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGD--QEMILLLSKKNAEERLAAFIYNLSR-- 169 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHH--HHHHHHHhCCCHHHHHHHHHHHHHH--
Confidence 54 455679999999999999999999999999999999999988887752 22333332233 2222211100
Q ss_pred cccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceeee
Q 002099 893 TCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYVN 959 (967)
Q Consensus 893 ~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 959 (967)
.+... ... + +.+...-++++ |++-.|++++++||.++.++++|++..+.+++.+.
T Consensus 170 ~~~~~------~~~-~----~~~~~~lt~~~-iA~~lG~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 224 (235)
T PRK11161 170 RFAQR------GFS-P----REFRLTMTRGD-IGNYLGLTVETISRLLGRFQKSGMLAVKGKYITIE 224 (235)
T ss_pred HHhhc------CCC-C----ceeEccccHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEc
Confidence 00000 000 0 01111223546 58999999999999999999999999999887653
No 26
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.70 E-value=4.3e-17 Score=176.44 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=157.9
Q ss_pred hhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 734 ~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
+++.+++..++++|++++++++.+||.+..|.+|+.|++|||+++++|++.+|.+.|.+.+. .+..+++|.+|||
T Consensus 152 I~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~-----ll~~m~~gtvFGE 226 (732)
T KOG0614|consen 152 IRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGK-----LLGKMGAGTVFGE 226 (732)
T ss_pred HHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCe-----eeeccCCchhhhH
Confidence 35678888999999999999999999999999999999999999999999999999987542 6689999999999
Q ss_pred hhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhcccccc
Q 002099 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~ 893 (967)
.+.|.|++|+|||+|+++|++|.|+|+.|+.+|+..-.-++.-+.++++.++ ++++++.+-+.+++ +-.....
T Consensus 227 LAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~------~~q~l~Ee~L~Kia-D~le~~~ 299 (732)
T KOG0614|consen 227 LAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVP------LFQNLPEELLLKIA-DVLEEEY 299 (732)
T ss_pred HHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhccCCHHHHHHHH-HHHHHHh
Confidence 9999999999999999999999999999999999988777777888888887 78999999999888 8888889
Q ss_pred ccCCeEEEeecCcee---EEEeeeeecccc
Q 002099 894 CLRGEIIEIPYHCIG---FLLEGFIKTHGL 920 (967)
Q Consensus 894 ~~~~~~i~~~~~~~~---iLl~G~v~~~~~ 920 (967)
|..|+.|..+.+.++ ++-+|.|+.+..
T Consensus 300 Yd~g~yIirqge~G~~ffii~~G~V~vtq~ 329 (732)
T KOG0614|consen 300 YDAGEYIIRQGEKGDTFFIISKGTVKVTQQ 329 (732)
T ss_pred hcCCceEEeecCCCCeEEEEecceEEEeec
Confidence 999999998876655 677799987653
No 27
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.69 E-value=5.7e-17 Score=171.09 Aligned_cols=183 Identities=12% Similarity=0.096 Sum_probs=144.2
Q ss_pred HhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEE
Q 002099 754 PLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 833 (967)
Q Consensus 754 ~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~ 833 (967)
.+.+..+.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+.||++||+.+++.+.+++++++|.++|+
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~ 105 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECW 105 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEE
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccccCCeEEEeecCceeEEEee
Q 002099 834 CFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEG 913 (967)
Q Consensus 834 l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~iLl~G 913 (967)
++.+|+++|.+++.++|.+...+.+.+..++.... +........+.++ ++..|.... ... +
T Consensus 106 i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~------Rla~~L~~~----~~~-------~ 166 (226)
T PRK10402 106 CLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRNI--VSLTQNQSFPLEN------RLAAFILLT----QEG-------D 166 (226)
T ss_pred EEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH--HHHHHhccChHHH------HHHHHHHhc----ccC-------C
Confidence 99999999999999999999999888887765411 1111111112222 111111100 000 0
Q ss_pred eeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 914 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 914 ~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.. ...+++ +++-.|++|.++||.|+++++.|++..+-+++.+
T Consensus 167 ~~--~~t~~~-lA~~lG~sretvsR~L~~L~~~G~I~~~~~~i~I 208 (226)
T PRK10402 167 LY--HEKHTQ-AAEYLGVSYRHLLYVLAQFIQDGYLKKSKRGYLI 208 (226)
T ss_pred cc--cchHHH-HHHHHCCcHHHHHHHHHHHHHCCCEEeeCCEEEE
Confidence 00 113556 5999999999999999999999999988776654
No 28
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.69 E-value=5.9e-17 Score=169.01 Aligned_cols=172 Identities=12% Similarity=0.167 Sum_probs=149.3
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.+.+++.-+|++|+++++.++.+++.++.+++|+.|++|||.++++|+|.+|.+.++..+. .+..++||+.|||.
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~-----~v~~~~~g~sFGEl 195 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT-----YVTTYSPGGSFGEL 195 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe-----EEeeeCCCCchhhh
Confidence 4678999999999999999999999999999999999999999999999999999998742 55789999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccc
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~ 894 (967)
+++.|.||.||+.|.+++.+|.+++..|++++..+..-..+|+...+.... .++.+...+-.++. +....+.|
T Consensus 196 ALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~p------il~~l~k~er~kv~-dal~~k~y 268 (368)
T KOG1113|consen 196 ALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVP------ILESLEKLERAKVA-DALGTKSY 268 (368)
T ss_pred HhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcch------hhHHHHHHHHHhhh-cccceeec
Confidence 999999999999999999999999999999999999999999998888776 44544444444455 66778899
Q ss_pred cCCeEEEeecCcee---EEEeeeeecc
Q 002099 895 LRGEIIEIPYHCIG---FLLEGFIKTH 918 (967)
Q Consensus 895 ~~~~~i~~~~~~~~---iLl~G~v~~~ 918 (967)
.+|+.+..+...+. ++.+|++...
T Consensus 269 ~~G~~Vi~qg~~ge~f~~i~eGEvdv~ 295 (368)
T KOG1113|consen 269 KDGERVIVQGDQGEHFYIIEEGEVDVL 295 (368)
T ss_pred cCCceEEeccCCcceEEEecccccchh
Confidence 99999998855444 6777877654
No 29
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.67 E-value=9.8e-17 Score=165.28 Aligned_cols=179 Identities=13% Similarity=0.153 Sum_probs=136.2
Q ss_pred CCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCc--ceeEEEEcceEEEEEEcHHHHHH
Q 002099 767 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP--YMSDMVTDSVVLCFFIESDKILS 844 (967)
Q Consensus 767 ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~--~~atv~A~~~~~l~~i~~~~f~~ 844 (967)
|+.|+++||+++++|+|.+|.|+++..+++|++.++..++||++||+.+++.+.+ +.++++|.++|+++.+|+++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 7899999999999999999999999999999999999999999999999998875 45789999999999999999999
Q ss_pred HHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhc-ccc-ccccCCeEEEeecCceeEEEeeeeecccccc
Q 002099 845 ILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKM-TTCLRGEIIEIPYHCIGFLLEGFIKTHGLQE 922 (967)
Q Consensus 845 ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~-~~~-~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~e 922 (967)
++.++|.+...+.+.+..++... .+..+.+...+.++-+... ... ..+.. +.+. + ..+....+++
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~--~~~~~~l~~~~~~~Rla~~L~~l~~~~~~------~~~~-~----~~~~~~~t~~ 147 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQT--EMMIETLAHRDMGSRLVSFLLILCRDFGV------PGQR-G----VTIDLRLSHQ 147 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHhCC------CCCC-e----EEecCCCCHH
Confidence 99999999999999999888762 2333333333333211000 011 01110 0000 0 0122223366
Q ss_pred ccccCCccccCCCCCcccccccccCCCCCcccceeee
Q 002099 923 ELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYVN 959 (967)
Q Consensus 923 eli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 959 (967)
| |++-.|++++++||.++.++++|++..+.+++.+.
T Consensus 148 ~-iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I~ 183 (193)
T TIGR03697 148 A-IAEAIGSTRVTITRLLGDLRKKKLISIHKKKITVH 183 (193)
T ss_pred H-HHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 7 59999999999999999999999999998887653
No 30
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.66 E-value=5.9e-16 Score=161.96 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=158.7
Q ss_pred hhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhc
Q 002099 739 SAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLI 818 (967)
Q Consensus 739 ~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~ 818 (967)
...+.|..++++....+....+.+.+++|++|+++||+++++|+|.+|.++++..+++|++.++..++||++|||.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 45667777788888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhc-cccccccCC
Q 002099 819 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMTTCLRG 897 (967)
Q Consensus 819 ~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~-~~~~~~~~~ 897 (967)
+.|++++++|.++|+++.+|++.|.+++.++|.+...+.+.+..++... ......+..++..+-+... ... +
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~--~~~~~~~~~~~~~~r~~~~l~~l-----~ 155 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQA--LERLSLLARKDVEERLARFLLNL-----G 155 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHH--HHHHHHHhhccHHHHHHHHHHHH-----h
Confidence 9999999999999999999999999998669999999999999999872 2333333333333211000 011 1
Q ss_pred eEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 898 EIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 898 ~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
+....+...+ +.+ .....+++ +++.+|.++.+++|.+.+++++|++...-++...
T Consensus 156 ~~~~~~~~~~-~~~----~~~~~~~~-ia~~~g~~~~~vsr~l~~l~~~g~i~~~~~~~~~ 210 (214)
T COG0664 156 RRLGIATEDG-ILI----PLPLTHKD-LAEYLGLSRETVSRILKELRKDGLISVRGKKIII 210 (214)
T ss_pred hccCCCCCCC-cEE----eccCCHHH-HHHHhCCchhhHHHHHHHHHhCCcEeeCCceEEE
Confidence 1111111100 111 12222334 5777899999999999999999999888766544
No 31
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.62 E-value=2.6e-15 Score=158.76 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=139.0
Q ss_pred hhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEE
Q 002099 755 LELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLC 834 (967)
Q Consensus 755 l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l 834 (967)
+....+.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.+...+.+|++||+. .+.++.++++|.++|++
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v 110 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV 110 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence 455678999999999999999999999999999999999999999888899999999974 46678899999999999
Q ss_pred EEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHH----HHHHHHhccccccccCCeEEEeecCceeEE
Q 002099 835 FFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQD----MRALIAERSKMTTCLRGEIIEIPYHCIGFL 910 (967)
Q Consensus 835 ~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~----l~~l~~~~~~~~~~~~~~~i~~~~~~~~iL 910 (967)
+.||.++|++++.++|.+...+++.+..++... .+....+...+ +..++..... .+..+..+.+
T Consensus 111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~--~~~~~~l~~~~~~~Rla~~Ll~l~~--~~g~~~~i~i-------- 178 (230)
T PRK09391 111 RLIKRRSLEQAAATDVDVARALLSLTAGGLRHA--QDHMLLLGRKTAMERVAAFLLEMDE--RLGGAGMMAL-------- 178 (230)
T ss_pred EEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHH--HhCCCCEEEe--------
Confidence 999999999999999999999999999888752 12233332222 2222211110 1111112222
Q ss_pred EeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcc-ccee
Q 002099 911 LEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPL-ETFY 957 (967)
Q Consensus 911 l~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~-~~~~ 957 (967)
.-++++ |++-.|++|.+++|.++++++.|++...- +++.
T Consensus 179 -------~lt~~~-IA~~lGisretlsR~L~~L~~~GlI~~~~~~~i~ 218 (230)
T PRK09391 179 -------PMSRRD-IADYLGLTIETVSRALSQLQDRGLIGLSGARQIE 218 (230)
T ss_pred -------cCCHHH-HHHHHCCCHHHHHHHHHHHHHCCcEEecCCceEE
Confidence 223556 59999999999999999999999997654 4444
No 32
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.61 E-value=2.5e-15 Score=156.01 Aligned_cols=180 Identities=11% Similarity=0.078 Sum_probs=132.3
Q ss_pred ccEEEEecCCCeeecCCC--CCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEE
Q 002099 758 STKEIMKLSGVTLYREGS--KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCF 835 (967)
Q Consensus 758 ~~~~~~~~~ge~I~~eGe--~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~ 835 (967)
..+.+.|++|++|+++|| +++++|+|.+|.|+++..+++|++.++..++|||+||+.++. +.+++++++|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 467889999999999999 779999999999999999999999999999999999997654 57889999999999999
Q ss_pred EEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhc-cccc-cccCCeEEEeecCceeEEEee
Q 002099 836 FIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMT-TCLRGEIIEIPYHCIGFLLEG 913 (967)
Q Consensus 836 ~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~-~~~~-~~~~~~~i~~~~~~~~iLl~G 913 (967)
.||++.| +|.+...+.+.+..++.... +..+.+...+.++-+... ..+. ++ +.. ..+ .+
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~~--~~~~~l~~~~~~~Rla~~Ll~l~~~~--~~~---~~~------~~ 144 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARAY--ESIYRLVGQRLKNRIAAALLELSDTP--LAT---QED------SG 144 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHHH--HHHHHHHhCchHHHHHHHHHHHHHHh--CCC---CCC------CC
Confidence 9999987 57777788887777777521 233333333333211000 0111 11 000 000 11
Q ss_pred eeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 914 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 914 ~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.+....++++ |++-.|++|+++||.+.++++.|++....+++.+
T Consensus 145 ~~~~~~t~~~-iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I 188 (202)
T PRK13918 145 ETMIYATHDE-LAAAVGSVRETVTKVIGELSREGYIRSGYGKIQL 188 (202)
T ss_pred eEEecCCHHH-HHHHhCccHHHHHHHHHHHHHCCCEEcCCCEEEE
Confidence 2222334656 5999999999999999999999999987777654
No 33
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.57 E-value=2.3e-14 Score=133.36 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=109.0
Q ss_pred CCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcc
Q 002099 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (967)
Q Consensus 743 lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~ 822 (967)
+|+.+++++++.+.+.++.+.+.+|++|+.+|++++++|+|.+|.++++..+++|++.....+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 57899999999999999999999999999999999999999999999999998888888899999999999999989999
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHH
Q 002099 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 856 (967)
Q Consensus 823 ~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l 856 (967)
.++++|.++|+++.|++++|.++++++|.+...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999988765
No 34
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.50 E-value=9.8e-14 Score=123.67 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=86.8
Q ss_pred EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEcHH
Q 002099 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 840 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~~~ 840 (967)
++.|++|++|+++|++++++|+|.+|.++++..+.+++......+++|++||+.+++.+.++.++++|.++|+++.||++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 46899999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcH
Q 002099 841 KILSILRSDPA 851 (967)
Q Consensus 841 ~f~~ll~~~p~ 851 (967)
+|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999985
No 35
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.45 E-value=9.8e-13 Score=123.06 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=106.2
Q ss_pred CCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhh--cCC
Q 002099 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL--IGK 820 (967)
Q Consensus 743 lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll--~~~ 820 (967)
+|.++++++++.+.+..+.+.+++|++|+++||+++++|+|.+|.++++..+.+|++.....+++|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 478999999999999999999999999999999999999999999999999888988888999999999999988 456
Q ss_pred cceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHH
Q 002099 821 PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 857 (967)
Q Consensus 821 ~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~ 857 (967)
++..+++|.++|+++.++.+++.+.+.+++.+...+.
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 7889999999999999999999999999988766544
No 36
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.40 E-value=3.3e-12 Score=141.47 Aligned_cols=130 Identities=18% Similarity=0.326 Sum_probs=121.7
Q ss_pred ChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 733 ~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
.++++++++|.|+.|+++++++|.+.+..++|.+||+|...|.+..++|+|.+|.|++...+ |+ ++..+..||.||
T Consensus 4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~--g~--v~~~~~~gdlFg 79 (610)
T COG2905 4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDG--GE--VLDRLAAGDLFG 79 (610)
T ss_pred CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCC--Ce--eeeeeccCcccc
Confidence 45899999999999999999999999999999999999999999999999999999998654 33 668999999999
Q ss_pred hhhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 813 e~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
-.++++..+....+.|++|+.+|.||++.|.++++++|.|++++-...+.|++.
T Consensus 80 ~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~ 133 (610)
T COG2905 80 FSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRD 133 (610)
T ss_pred chhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 999999888788899999999999999999999999999999999999999986
No 37
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.37 E-value=7e-13 Score=144.21 Aligned_cols=129 Identities=16% Similarity=0.261 Sum_probs=117.2
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCC-CceeEeeeccCCCeech
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR-NKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~-g~~~~~~~l~~G~~fGe 813 (967)
.++|+++|+|+++|++.+.++++++++..|..|++|++||+.++.+|+|.+|.|++...++. ++...+..++.||+|||
T Consensus 271 ~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE 350 (732)
T KOG0614|consen 271 MNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGE 350 (732)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhH
Confidence 57899999999999999999999999999999999999999999999999999999988754 66777889999999999
Q ss_pred hhhhcCCcceeEEEEcce-EEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHH
Q 002099 814 YEVLIGKPYMSDMVTDSV-VLCFFIESDKILSILRSDPAVEDFLWQQSAIA 863 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~~-~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~ 863 (967)
.+++....|+|+++|..+ ++++.|+|+.|.+++....++.++-+..-..+
T Consensus 351 ~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r~ 401 (732)
T KOG0614|consen 351 RALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEERR 401 (732)
T ss_pred HHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhhh
Confidence 999999999999999998 99999999999999988877776655554444
No 38
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.33 E-value=5.8e-12 Score=144.77 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=105.7
Q ss_pred ChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 733 ~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
+..++++++|+|+++++++++.+..+++.+.|++|++|+++||.++++|+|.+|.|+++..+.+| +..+..+++|++||
T Consensus 5 ~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG 83 (413)
T PLN02868 5 SVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFG 83 (413)
T ss_pred HHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEee
Confidence 34678899999999999999999999999999999999999999999999999999999988777 56677899999999
Q ss_pred hhhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcH
Q 002099 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPA 851 (967)
Q Consensus 813 e~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~ 851 (967)
+. +.+.++.++++|.++|+++.||++.|.-+...++-
T Consensus 84 ~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~ 120 (413)
T PLN02868 84 YG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIW 120 (413)
T ss_pred hh--hCCCCcccEEEECCCEEEEEEcHHHHhhhcccccc
Confidence 85 68889999999999999999999999988766543
No 39
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.13 E-value=1.6e-08 Score=112.64 Aligned_cols=259 Identities=17% Similarity=0.194 Sum_probs=164.9
Q ss_pred hHHHHHHhHHHhhhhhhcC-------CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccc
Q 002099 99 DLLLAVFLPALLFESSFAM-------EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSAT 171 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~-------~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~T 171 (967)
+++-.....+..|..|+|+ +++..||..-|+ .-|+.|++++.++ |+.+ +..-..+.-=-+|-++|
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~-~aAlGGm~vPali-----y~~~--n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPV-AAALGGMIVPALI-----YVAV--NLAGGGALRGWAIPTAT 135 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHH-HHHHHhHHHHHHH-----HHHH--hCCchhhhhhhhhhhhh
Confidence 4455666777788999999 666666666663 4688888888754 2222 11111212222677899
Q ss_pred cHHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 172 DPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVL 249 (967)
Q Consensus 172 dp~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~ 249 (967)
|.+.++.++..+| +|.+++..+.+-+.+||..++++..++. +++.++...... ++ ++++- +
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~~~~L~~a-----~~----~~~~l----~ 198 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELNLEALLLA-----LV----PLALF----W 198 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCCHHHHHHH-----HH----HHHHH----H
Confidence 9999999999887 7999999999999999999999988776 445554433111 11 11111 1
Q ss_pred HHhhh-cccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhccc-C-----ChhHHHHHHHHHHHHHHHH
Q 002099 250 WLGFI-FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA-F-----KGESQQSLHYFWEMVAYIA 322 (967)
Q Consensus 250 ~l~~~-~~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~ 322 (967)
.+++. .++...+.. +..+.++.. +..|.++.+|.|++|+++....+.. . .+..++..+.+...+.++.
T Consensus 199 ~l~~~~V~~~~~Y~i----lg~~lW~~~-~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~I 273 (423)
T PRK14853 199 LLVQKRVRKWWLLLP----LGVATWILV-HESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVA 273 (423)
T ss_pred HHHHcCCchhhHHHH----HHHHHHHHH-HHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 22221 222222222 233445455 7899999999999999996421111 0 0123444455666667899
Q ss_pred HHHH-HHHHhHHHhh-hhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChhhHHHHhh
Q 002099 323 NTLI-FILSGVVIAE-GILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW 394 (967)
Q Consensus 323 ~~l~-Fv~~G~~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~-----~~~~~~~~~~~l~~ 394 (967)
.|+| |.-.|+.++. ..+. +...-...+.+.+..+++|+++++.+..+..++ ..+.+|++.+-++.
T Consensus 274 LPLFAFANaGV~l~~~~~~~-------~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~ 345 (423)
T PRK14853 274 VPVFAFFSAGVAIGGLSGLG-------AALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL 345 (423)
T ss_pred HHHHHHHHhhheecCchhHH-------HHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH
Confidence 9999 9999999853 2110 000112455667788899999998887766544 35678888777666
No 40
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.13 E-value=1.4e-10 Score=127.05 Aligned_cols=193 Identities=15% Similarity=0.178 Sum_probs=150.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HccccchHhHHHHHHHHHHHHHHhhc
Q 002099 647 VVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLE--KVGLLEEKEMLHLHDAVQSDLKRLLR 724 (967)
Q Consensus 647 ~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~--~~G~l~~~e~~~l~~~i~~~l~~l~~ 724 (967)
.|++++..+.. .+..-...+.+.+|-.+++..+-+++.+|+-.-| ..|+-.++-..-..++...++.-..+
T Consensus 474 TI~QQM~s~T~-------rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLN 546 (971)
T KOG0501|consen 474 TIIQQMTSNTN-------RYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLN 546 (971)
T ss_pred HHHHHHHhhhH-------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecc
Confidence 45566555443 3334444677889999999999999999987766 46765555333333333222221122
Q ss_pred CCCCCCCCChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeee
Q 002099 725 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPV 804 (967)
Q Consensus 725 ~~~~~~~~~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~ 804 (967)
++..+.+|-|+--++..++.|+-.++..+..|||.|++.||..|.++||++|..++...++ ++..
T Consensus 547 ----------RKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-----VVAI 611 (971)
T KOG0501|consen 547 ----------RKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-----VVAI 611 (971)
T ss_pred ----------hhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc-----EEEE
Confidence 5678999999999999999999999999999999999999999999999999999998775 7789
Q ss_pred ccCCCeechhhhhcC--CcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHH
Q 002099 805 FTHGSNLGLYEVLIG--KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSA 861 (967)
Q Consensus 805 l~~G~~fGe~~ll~~--~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~ 861 (967)
+|.||+||..-.-.+ ...-|+|+|+|.|.+..|.|+.+.+.++-+..|+.-+-+++.
T Consensus 612 LGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~ 670 (971)
T KOG0501|consen 612 LGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLT 670 (971)
T ss_pred eecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhcee
Confidence 999999998743322 223589999999999999999999999999888887766653
No 41
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=6.4e-10 Score=116.97 Aligned_cols=114 Identities=15% Similarity=0.233 Sum_probs=104.6
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++|+++|.++.+...++..+.+.+.++.|++|+.|..+|+.++.+|+|.+|.|.+.... +| ..+ .+++||+|||.
T Consensus 239 ~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~dyfge~ 314 (368)
T KOG1113|consen 239 EPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKGDYFGEL 314 (368)
T ss_pred hhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-EechhhhcchH
Confidence 568999999999999999999999999999999999999999999999999999998766 33 444 89999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 852 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~ 852 (967)
+++.+.||.|+|.|.+...|..++++.|+.++.-..++
T Consensus 315 al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 315 ALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred HHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 99999999999999999999999999999998665443
No 42
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.61 E-value=6.2e-08 Score=112.19 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=102.3
Q ss_pred HHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceE
Q 002099 753 EPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVV 832 (967)
Q Consensus 753 ~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~ 832 (967)
..+--.+......+|+.+++|||..|++|+|++|.++-.....+|+..++..++.||.+|+..+++++||..|+.|..++
T Consensus 502 r~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdS 581 (1158)
T KOG2968|consen 502 RKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDS 581 (1158)
T ss_pred hhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEeeh
Confidence 34444567888999999999999999999999999998877777777788899999999999999999999999999999
Q ss_pred EEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHH
Q 002099 833 LCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (967)
Q Consensus 833 ~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~ 865 (967)
++..||..-|..+-.++|.+..++.+-++++..
T Consensus 582 elariPe~l~~~ik~ryP~v~~rl~~ll~~~~~ 614 (1158)
T KOG2968|consen 582 ELARIPEGLLNFIKLRYPQVVTRLIKLLAEKIL 614 (1158)
T ss_pred hhhhccHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 999999999999999999999988888877773
No 43
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.50 E-value=7.8e-06 Score=89.68 Aligned_cols=256 Identities=16% Similarity=0.204 Sum_probs=154.4
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQIK-------RCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l~-------~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllg-ails~ 170 (967)
+++-.....+..|..|+|+..+.+. |..-| +.-|+.|++++..+ |..+..+-+ ...=| +|=.+
T Consensus 54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP-~~aA~GGm~vPa~i-----y~~~n~~~~---~~~~GW~IP~A 124 (373)
T TIGR00773 54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFP-VIAAIGGMIAPALI-----YLAFNANDP---ITREGWAIPAA 124 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HhheecCCC---cccCccccccH
Confidence 4455566777788899998765542 22222 34567777777654 222211100 00111 45678
Q ss_pred ccHHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (967)
Q Consensus 171 Tdp~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (967)
||.+-+..++.=+| +|..+...+..=++++|..++++..++.+ ++.++..... . . + +....
T Consensus 125 TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~~~~L~~-------a-~--~---~~~~l 187 (373)
T TIGR00773 125 TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----NDLSMAALLV-------A-A--V---AIAVL 187 (373)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCCHHHHHH-------H-H--H---HHHHH
Confidence 99998888876655 89999999999999999999988776652 3444332211 0 0 0 11112
Q ss_pred HHHhhhcccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHH-HHHHHHHHH-
Q 002099 249 LWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEM-VAYIANTLI- 326 (967)
Q Consensus 249 ~~l~~~~~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~- 326 (967)
+.+++..-++.. ..+....+.++.. ...|++..+|.|++|+++....+.. ++-.+.+++..+. ..++..|+|
T Consensus 188 ~~~~~~~v~~~~---~y~~lgvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~lilPlFA 261 (373)
T TIGR00773 188 AVLNRCGVRRLG---PYMLVGVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLILPLFA 261 (373)
T ss_pred HHHHHcCCchhh---HHHHHHHHHHHHH-HHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333212211 1111222223233 5689999999999999997632211 1112344444444 457788999
Q ss_pred HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhhHHHHhh
Q 002099 327 FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (967)
Q Consensus 327 Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~-----~~~~~~~~~~l~~ 394 (967)
|+..|+.++...+. ...++ ..+.+.+..+++|+++++....+..+++ .+.+|++..-++.
T Consensus 262 FanAGv~l~~~~~~-------~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~ 326 (373)
T TIGR00773 262 FANAGVSLQGVSLN-------GLTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV 326 (373)
T ss_pred HHhcCeeeecCcch-------hhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 99999998542221 11123 3567778888999999998887766554 4678888777666
No 44
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.98 E-value=0.0082 Score=65.70 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=70.7
Q ss_pred CchhHHHHHHHHHHHHHHHH---hhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHH
Q 002099 33 PTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPAL 109 (967)
Q Consensus 33 ~~~~ll~~~~~l~~~~~~~~---l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~l 109 (967)
....+...++++++|...+. +++|+.+|.+|.-=+++.++++..++... ....++ ..-++.++.+ .
T Consensus 7 ~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~----~~~~fd---~~l~~~fmli----F 75 (404)
T COG0786 7 ALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGG----VSLNFD---TSLQDVFMLI----F 75 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcce----EEEeCC---cccccHHHHH----H
Confidence 33446667777888887765 66899999998766666666766543221 111110 1112333332 2
Q ss_pred hhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHcCCCCcHHHHHHhhcc
Q 002099 110 LFESSFAMEVHQIKRCLVQMILLAGPGVMISTF--FLGAALKLTFPYDWSWKTSLLLGGL 167 (967)
Q Consensus 110 lF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~--~~~~~~~~~~~~~~~~~~alllgai 167 (967)
.-..|+..++..+||-+++.......+..+... .+|..+..+. |.+...+++.|++
T Consensus 76 Fttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~l--gidpl~gllagsI 133 (404)
T COG0786 76 FATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLL--GLDPLIGLLAGSI 133 (404)
T ss_pred HHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHc--CccHHHHHHhcce
Confidence 234599999999999998877655444433322 2233333333 5666667777654
No 45
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.96 E-value=1.9e-05 Score=92.29 Aligned_cols=169 Identities=15% Similarity=0.196 Sum_probs=114.9
Q ss_pred CCCeeecCCCCCCeEEEEeeeeEEEEEeeCC--C----ceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEcH
Q 002099 766 SGVTLYREGSKPSGIWLISNGVVKWTSKSIR--N----KHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIES 839 (967)
Q Consensus 766 ~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~--g----~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~~ 839 (967)
..++|.++|+...+.|+|..|.+.++....+ + .....-.++||+++|..++++|.|..++++|.++|.+.++++
T Consensus 393 eitiiv~q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~isr 472 (1158)
T KOG2968|consen 393 EITIIVEQGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSDTRVLFISR 472 (1158)
T ss_pred ceEEEEecccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecceEEEEeeH
Confidence 4556899999999999999999987754421 1 122334789999999999999999999999999999999999
Q ss_pred HHHHHHHhhCc----HHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccccCCeEEEeec---CceeEEEe
Q 002099 840 DKILSILRSDP----AVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPY---HCIGFLLE 912 (967)
Q Consensus 840 ~~f~~ll~~~p----~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~---~~~~iLl~ 912 (967)
++|.+++.++| .+.+.+.+.+...+.+ . . ....-.....|+.+..+. .+..+++.
T Consensus 473 s~l~~~~~~~p~I~L~ia~svl~~lsp~lr~-----~---------D----~AldWv~l~~g~alyrqgD~Sd~iyvVl~ 534 (1158)
T KOG2968|consen 473 SDLERFLDAEPLIYLRIAHSVLRRLSPFLRK-----L---------D----FALDWVRLEPGQALYRQGDSSDSIYVVLN 534 (1158)
T ss_pred HHHHHHHHhCceEEEehhhHHHHhcCHHHhh-----h---------h----hhcceEEeccccHHHhcCCccCcEEEEec
Confidence 99999999999 5555444444333332 0 0 111222333344333222 23348889
Q ss_pred eeeecccc----cc---------ccccCCccccCCCCCcccccccccCCCCCc
Q 002099 913 GFIKTHGL----QE---------ELITPPAALIPSQGNLSFRSAETSGNLRPP 952 (967)
Q Consensus 913 G~v~~~~~----~e---------eli~~~~~l~~~~~n~~~~~~~~~~~~~~~ 952 (967)
|+++.-.. +. ++||-.-.+..+.-+.+....+++-+.++.
T Consensus 535 GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSelariP 587 (1158)
T KOG2968|consen 535 GRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSELARIP 587 (1158)
T ss_pred CeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEeehhhhhcc
Confidence 98876543 22 233333446667777777777777776654
No 46
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.82 E-value=0.0016 Score=72.96 Aligned_cols=255 Identities=15% Similarity=0.221 Sum_probs=145.1
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllg-ails~ 170 (967)
+++-.....+..|..|+|+..+.+ ||..-| +.-|+.|++++.++ |+.+..+-+ . .=| +|-.+
T Consensus 70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lP-i~AAlGGmivPAlI-----Y~~~n~~~~---~-~~GWgIPmA 139 (438)
T PRK14856 70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFP-VIAALGGMIAPGLI-----YFFLNADTP---S-QHGFGIPMA 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHH-HHHHHhccHHHHHH-----HhheecCCC---c-cCccccccH
Confidence 456666777788889999766544 222223 34567777777653 333311100 0 112 56688
Q ss_pred ccHHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (967)
Q Consensus 171 Tdp~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (967)
||.+-++.++.=+| +|..+...+..=++++|..|+++..++.+ ++.++..... .++ ++ +..
T Consensus 140 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~~-----a~~----~~----~~l 202 (438)
T PRK14856 140 TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TNLKFAWLLG-----ALG----VV----LVL 202 (438)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCCcHHHHHH-----HHH----HH----HHH
Confidence 99999988886555 89999999999999999999988876653 3444332211 011 11 111
Q ss_pred HHHhhhc-ccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCC----------------------h
Q 002099 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFK----------------------G 305 (967)
Q Consensus 249 ~~l~~~~-~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~----------------------~ 305 (967)
+.+++.. +....+.. .....++.- ..-|++.-+|.++.|+++....+.+-. +
T Consensus 203 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T PRK14856 203 AVLNRLNVRSLIPYLL----LGVLLWFCV-HQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKE 277 (438)
T ss_pred HHHHHcCCccccHHHH----HHHHHHHHH-HHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccc
Confidence 2233322 22222322 223333333 456999999999999999763221000 0
Q ss_pred h---------------H-HHHHHHHHHH-HHHHHHHHH-HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHH
Q 002099 306 E---------------S-QQSLHYFWEM-VAYIANTLI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRL 367 (967)
Q Consensus 306 ~---------------~-~~~~~~~~~~-~~~~~~~l~-Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~ 367 (967)
+ . -+.+++.+.. +.++..|+| |.-.|+.++.... ...-...+.+.+.++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~---------~~~~pv~lGI~~GLvvGK~ 348 (438)
T PRK14856 278 QQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN---------LEVDKVLLGVILGLCLGKP 348 (438)
T ss_pred hhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh---------hccCcHHHHHHHHHHhcch
Confidence 0 0 1223333333 333444443 3336666642211 0111234566677889999
Q ss_pred HHHHHHHHHHHhhC-----CCCChhhHHHHhh
Q 002099 368 FVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (967)
Q Consensus 368 l~v~~~~~~l~~~~-----~~~~~~~~~~l~~ 394 (967)
++++.+..+..+++ .+.+|++.+-++.
T Consensus 349 lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~ 380 (438)
T PRK14856 349 LGIFLITFISEKLKITARPKGISWWHILGAGL 380 (438)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 99998887766654 4678888776665
No 47
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.70 E-value=0.098 Score=59.04 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=55.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHH---hhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhH
Q 002099 31 GNPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLP 107 (967)
Q Consensus 31 ~~~~~~ll~~~~~l~~~~~~~~---l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 107 (967)
.+....+...++++++|.+++. +++|+.+|.++.==++|.++.+.... .+... .+.|.. +...++.
T Consensus 3 l~~~~tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~----~~~~~------~~f~~~-l~~~lm~ 71 (368)
T PF03616_consen 3 LDALQTLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGG----FGGIS------ISFDTS-LQDFLMI 71 (368)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHh----cCceE------EEechh-HHHHHHH
Confidence 3445567778888999998876 66899999886543444444433221 11111 122322 2222222
Q ss_pred HHhhhhhhcCCHHHHHHhhhhHHHHHHHH
Q 002099 108 ALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (967)
Q Consensus 108 ~llF~~g~~~~~~~l~~~~~~i~~la~~g 136 (967)
+..=..|+..+++.+||-++.+.......
T Consensus 72 ~fF~~igL~~~~~~lkkgg~~~~~~~~~~ 100 (368)
T PF03616_consen 72 IFFTTIGLGASLKLLKKGGKAVLIFLLIA 100 (368)
T ss_pred HHHHHHhhccchhhHHhhHHHHHHHHHHH
Confidence 22224588889999999887776554443
No 48
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.69 E-value=0.0024 Score=70.56 Aligned_cols=257 Identities=17% Similarity=0.209 Sum_probs=146.6
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllg-ails~ 170 (967)
+++-.....+..|..|+|+..+.+ ||..-| +.-|+.|++++..+ |..+..+-+ ...=| +|-.+
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-i~AAlGGmivPAlI-----y~~~n~g~~---~~~~GWgIPmA 131 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILP-AIAAVGGMVVPALI-----YAAFNYNNP---ETLRGWAIPAA 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HheeecCCC---cccCccccccH
Confidence 445566677778889999876544 222233 34577777777654 222211100 00011 45678
Q ss_pred ccHHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (967)
Q Consensus 171 Tdp~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (967)
||.+-++.++.=+| +|..+...+..=+.++|..++++..++. +++.++..... .. +. ....
T Consensus 132 TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY----t~~i~~~~L~~-------a~---~~---~~~l 194 (389)
T PRK09560 132 TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY----TSDLSLPALAL-------AA---IA---IAVL 194 (389)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCCCCHHHHHH-------HH---HH---HHHH
Confidence 99999888887655 8999999999999999999998877665 33444332211 10 11 1111
Q ss_pred HHHhhhc-ccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCC-hhHHHHHHHHHHHHHHHHHHHH
Q 002099 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFK-GESQQSLHYFWEMVAYIANTLI 326 (967)
Q Consensus 249 ~~l~~~~-~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 326 (967)
+.+++.. ++...+.. .....++.- ..-|.+.-+|.++.|+++....+.... +..++..|.+...++++..|+|
T Consensus 195 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlF 269 (389)
T PRK09560 195 FLLNRLGVTKLTPYLI----VGAILWFAV-LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLF 269 (389)
T ss_pred HHHHHcCCccchHHHH----HHHHHHHHH-HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHH
Confidence 2233322 22222322 222333333 456999999999999999763222211 1122223334344455545544
Q ss_pred -HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhhHHHHhh
Q 002099 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (967)
Q Consensus 327 -Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~-----~~~~~~~~~~l~~ 394 (967)
|.-.|+.++...+. . ..-...+.+.+.++++|+++++.+..+..+++ .+.+|++..-++.
T Consensus 270 AlaNAGV~l~~~~~~-------~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~ 335 (389)
T PRK09560 270 AFANAGVSLAGISLS-------S-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV 335 (389)
T ss_pred HhhcCCeeecCCcHH-------h-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 44467666321111 0 11123456677788999999998887766554 4677888776665
No 49
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.69 E-value=0.0026 Score=71.02 Aligned_cols=252 Identities=13% Similarity=0.175 Sum_probs=142.9
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllg-ails~ 170 (967)
+++-.....+..|..|+|+..+.+ ||..-| +.-|+.|++++.++ |+.+..+-+ . .=| +|-.+
T Consensus 65 ~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lP-iiAAlGGmivPAlI-----y~~~n~~~~--~--~~GWgIPmA 134 (423)
T PRK14855 65 HWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALA-VVAALGGMLVPAAL-----YTALNAGGP--G--ASGWGVPMA 134 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHH-HHHHHhchHHHHHH-----HheeecCCC--c--cCccccccH
Confidence 445566677778889999876654 222222 34567777777643 333321111 0 112 56788
Q ss_pred ccHHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (967)
Q Consensus 171 Tdp~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (967)
||.+-+.+++.=+| +|..+...+..=+++||..|+++..++. +++.++.... +... + .+..
T Consensus 135 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~-------~a~~--~----~~~l 197 (423)
T PRK14855 135 TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY----TSGLNLLALL-------LAAL--T----WALA 197 (423)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec----CCCCCHHHHH-------HHHH--H----HHHH
Confidence 99999998887665 8999999999999999999998877665 3344443221 1111 1 1111
Q ss_pred HHHhhhc-ccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCC-----------------------
Q 002099 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFK----------------------- 304 (967)
Q Consensus 249 ~~l~~~~-~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~----------------------- 304 (967)
+++++.. +....+.. .....++.- ..-|.+.-+|-++.|+++....+..-.
T Consensus 198 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (423)
T PRK14855 198 LLAGRLGVTSLKIYAV----LGALLWFFV-LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD 272 (423)
T ss_pred HHHHHcCCccccHHHH----HHHHHHHHH-HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence 2233321 22222222 222333333 456999999999999999753111100
Q ss_pred -h------hH-HHHHHHHHH-HHHHHHHHHH-HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 305 -G------ES-QQSLHYFWE-MVAYIANTLI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLY 374 (967)
Q Consensus 305 -~------~~-~~~~~~~~~-~~~~~~~~l~-Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~ 374 (967)
+ +. -+.+++... .+.++..|+| |.-.|+.+... . .....+.+.+.++++|+++++.++
T Consensus 273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~----------~--~~pv~lGI~~GLvvGK~lGI~~~s 340 (423)
T PRK14855 273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGG----------G--LGTVSLGVFLGLLLGKPLGVVGGA 340 (423)
T ss_pred hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCC----------C--CCcHHHHHHHHHHhcchHHHHHHH
Confidence 0 00 112223222 2333344433 33356655210 0 112445667778899999999888
Q ss_pred HHHHhhC-----CCCChhhHHHHhh
Q 002099 375 PVLRNFG-----YGLEWKEAIILVW 394 (967)
Q Consensus 375 ~~l~~~~-----~~~~~~~~~~l~~ 394 (967)
.+..+++ .+.+|++.+-+++
T Consensus 341 ~lavkl~~a~lP~g~~w~~l~gv~~ 365 (423)
T PRK14855 341 WLAVRLGLASLPRRVNWLHMLGAGL 365 (423)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 7766554 4678888777666
No 50
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.62 E-value=0.0027 Score=69.94 Aligned_cols=256 Identities=17% Similarity=0.208 Sum_probs=145.8
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQIK-------RCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l~-------~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllg-ails~ 170 (967)
+++-.....+..|..|+|+..+.+. |..-| +.-|+.|++++.++ |..+..+-+ ...=| +|-.+
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP-i~AAlGGmivPAli-----y~~~n~~~~---~~~~GWaIP~A 131 (388)
T PRK09561 61 LWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALP-VIAAIGGMLVPALI-----YLLFNYADP---VTREGWAIPAA 131 (388)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhchHHHHHH-----HhheecCCC---cccCccccccH
Confidence 4455566777788899998766542 22223 34577777777654 222211100 00111 45678
Q ss_pred ccHHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (967)
Q Consensus 171 Tdp~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (967)
||.+-+..++.=+| +|..+...+..=+.++|..++++..++. +++.++.... +... + ....
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~-------~a~~----~--~~~l 194 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY----TSDLSMVSLG-------VAAV----A--IAVL 194 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec----CCCccHHHHH-------HHHH----H--HHHH
Confidence 99998888886555 8999999999999999999998877665 3444443221 1111 0 1111
Q ss_pred HHHhhhc-ccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHH-
Q 002099 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI- 326 (967)
Q Consensus 249 ~~l~~~~-~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 326 (967)
+.+++.. ++...+.. .....++.- ..-|.+.-+|-++.|+++....+..-+| .++..|.+...+.++..|+|
T Consensus 195 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGvHaTiAGV~la~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlFA 268 (388)
T PRK09561 195 AVLNLCGVRRTSVYIL----VGVVLWVAV-LKSGVHATLAGVIVGFFIPLKEKHGRSP-AERLEHGLHPWVAFLILPLFA 268 (388)
T ss_pred HHHHHcCCccchHHHH----HHHHHHHHH-HHccccHHHHHHHHHhhccccCCCCCCH-HHHHHHHhhhhhhheeHHHHH
Confidence 2233322 22222322 222333333 4569999999999999997632222122 22233334444455444444
Q ss_pred HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhhHHHHhh
Q 002099 327 FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (967)
Q Consensus 327 Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~-----~~~~~~~~~~l~~ 394 (967)
|.-.|+.+....+. ...-.....+.+..+++|+++++..+.+..+++ .+.+|++..-++.
T Consensus 269 faNAGV~l~~~~~~--------~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~ 333 (388)
T PRK09561 269 FANAGVSLQGVTLD--------GLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV 333 (388)
T ss_pred hhcCCeeeccCcHH--------hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 44466665221110 001123455667788999999998887766554 4678888776665
No 51
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.57 E-value=0.00043 Score=76.13 Aligned_cols=259 Identities=15% Similarity=0.201 Sum_probs=130.3
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHHHH---hhh---hHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-cccccc
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQIKR---CLV---QMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSAT 171 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l~~---~~~---~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllg-ails~T 171 (967)
+++-....++..|..|+|+..+...- +.+ -.+.-|+.|++++..+ |..+..+-+ . -.=| +|-.+|
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI-----yl~~n~~~~--~-~~~GW~IP~AT 128 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI-----YLAFNAGGP--E-AAHGWAIPMAT 128 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG--SST--T-HHHHTSSSS--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH-----HheeecCCC--C-cCceEEecccc
Confidence 45666777888889999976654421 122 2234566777776643 333321222 1 1122 677899
Q ss_pred cHHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 172 DPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVL 249 (967)
Q Consensus 172 dp~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~ 249 (967)
|.+-+.+++.=+| +|..++..+..=+.+||..++++..++.+ ++.++.... .... .....+
T Consensus 129 DIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i~~~~L~-------~a~~------~~~~l~ 191 (378)
T PF06965_consen 129 DIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DGISLLWLL-------LAAA------ALLLLF 191 (378)
T ss_dssp -HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHHH-------HHHH------HHHHHH
T ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCCCHHHHH-------HHHH------HHHHHH
Confidence 9999999887554 89999999999999999999998887763 233332211 1101 111112
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhccc---CChhHHHHHHHHHHHHHHHHHHHH
Q 002099 250 WLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA---FKGESQQSLHYFWEMVAYIANTLI 326 (967)
Q Consensus 250 ~l~~~~~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 326 (967)
.+++....+. ...+......++.- ..-|.+..+|-++.|+++....+.. ..+..++..+.....++++..|+|
T Consensus 192 ~l~r~~v~~~---~~Y~~~G~~lW~~~-l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlF 267 (378)
T PF06965_consen 192 VLNRLGVRSL---WPYLLLGILLWYAV-LKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLF 267 (378)
T ss_dssp HHHHTT---T---HHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHCCCcee---hHHHHHHHHHHHHH-HHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhH
Confidence 2333221111 11222233444443 5678889999999999998744432 111222222333333444444443
Q ss_pred -HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChhhHHHHhh
Q 002099 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW 394 (967)
Q Consensus 327 -Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~-----~~~~~~~~~~~l~~ 394 (967)
|.-.|+.++...+. ...-...+.+.+..+++|+++++..+.+..++ ..+.+|++...++.
T Consensus 268 AlaNAGV~l~~~~~~--------~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~ 333 (378)
T PF06965_consen 268 ALANAGVSLSGSSLG--------DLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL 333 (378)
T ss_dssp HHHHS----SSS-----------THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH
T ss_pred hheeCceEEecCchH--------hhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 44467766432211 01112233456677889999997665443333 34677887776665
No 52
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.54 E-value=0.0053 Score=67.49 Aligned_cols=255 Identities=14% Similarity=0.186 Sum_probs=145.8
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh-ccccc
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l-------~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllg-ails~ 170 (967)
+++-.....+..|..|+|+..+.. ||..-| +.-|+.|++++..+ |..+..+ ....=| +|-.+
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-~~AAlGGmivPAlI-----y~~~n~~----~~~~~GW~IP~A 127 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITP-AIAAFAGLAMPSLI-----YLSINHD----IKVINGWAIPSA 127 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HHhhccC----CcccCccccccH
Confidence 445566677778889998766544 222223 34577777777654 2222111 111112 56688
Q ss_pred ccHHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (967)
Q Consensus 171 Tdp~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~ 248 (967)
||.+-++.++.=+| +|..+...+..=+.+||..++++..++. +++.++.... +.. +.+ +. .
T Consensus 128 TDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~-------~A~---~~~-~~--l 190 (383)
T PRK14854 128 TDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY----TKSLSLLSLS-------LGT---LFI-LA--M 190 (383)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCCccHHHHH-------HHH---HHH-HH--H
Confidence 99998888887665 8999999999999999999998877665 3344443221 111 111 11 1
Q ss_pred HHHhhh--cccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHH
Q 002099 249 LWLGFI--FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI 326 (967)
Q Consensus 249 ~~l~~~--~~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (967)
+.+++. .+....+.. .....++.- ..-|.+.-+|-++.|+++....+...+| .++..|.+...+.++..|+|
T Consensus 191 ~~~nr~~~v~~~~~Y~~----~G~~lW~~~-l~SGvHaTiAGV~~a~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlF 264 (383)
T PRK14854 191 IICNRIFKINRSSVYVV----LGFFAWFCT-IKSGVHATLAGFTTALCIPFRENDKDSP-ANFMEDSLHPWIIYFILPVF 264 (383)
T ss_pred HHHHHhcCCceehHHHH----HHHHHHHHH-HHhcccHHHHHHHHHHhcccCCCCCCCH-HHHHHHHhhchHHHhhHHHH
Confidence 122222 222222322 223333333 4569999999999999997632221122 12223334444455555554
Q ss_pred -HHHHhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChhhHHHHhh
Q 002099 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW 394 (967)
Q Consensus 327 -Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~-----~~~~~~~~~~~l~~ 394 (967)
|.-.|+.++...+. ...-.....+.+..+++|+++++....+..++ ..+.+|++.+-++.
T Consensus 265 A~aNAGV~l~~~~~~--------~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~ 330 (383)
T PRK14854 265 AFANAGISFSGISFS--------ILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL 330 (383)
T ss_pred HhhcCCeeeccCcHH--------hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 44466666321110 00112345666778899999998887766554 34678888777665
No 53
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.48 E-value=0.067 Score=58.50 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHH
Q 002099 43 SLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQ 121 (967)
Q Consensus 43 ~l~~~~~~~~l~-~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~ 121 (967)
+-.++..++... ....+++.+.-+++|+++|+...+.++ ...+++ ....+.++.+++. .-|+++++.+
T Consensus 9 ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~---~~~~Gi----~~~~k~~Lr~gIV----LlG~~l~~~~ 77 (305)
T PF03601_consen 9 IAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPA---RFKPGI----KFSSKKLLRLGIV----LLGFRLSFSD 77 (305)
T ss_pred HHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcH---HHHhHH----HHHHHHHHHHHHH----HHCccccHHH
Confidence 333444444332 457889999999999999972222111 111111 1122345555544 4588999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHH
Q 002099 122 IKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMND 201 (967)
Q Consensus 122 l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD 201 (967)
+.+.+++.+...+..++.+..++.+...-.+ +++...+.++|+=.|.=...|+.++-.-.+.+++-.....+-..+=.
T Consensus 78 i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~--~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg 155 (305)
T PF03601_consen 78 ILALGWKGLLIIIIVVILTFLLTYWLGRRLF--GLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFG 155 (305)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHH
Confidence 9999998888877777777666555551344 78999999998766666666666665555555555555555555556
Q ss_pred HHHHHHHHHHHHHH
Q 002099 202 GTAIVVYQLFFQMV 215 (967)
Q Consensus 202 ~~aivlf~~~~~~~ 215 (967)
..++++|-.+....
T Consensus 156 ~vam~~~P~l~~~l 169 (305)
T PF03601_consen 156 TVAMFLYPLLGHAL 169 (305)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777776665544
No 54
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.0096 Score=62.95 Aligned_cols=265 Identities=16% Similarity=0.192 Sum_probs=145.9
Q ss_pred HhHHHhhhhhhcCCHHHHHH---hhhhH---HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHH
Q 002099 105 FLPALLFESSFAMEVHQIKR---CLVQM---ILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVA 178 (967)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~---~~~~i---~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~ 178 (967)
...+..+..|+|+..+.+.- ++++. ..-|..|++++..+ |+.+..+-| .+.===+|-++||.+-+..
T Consensus 70 LMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----y~~~n~~~p--~~~~GWaIP~ATDiAFAlG 142 (390)
T COG3004 70 LMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----YLALNAGDP--ATLEGWAIPMATDIAFALG 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----hheeecCCh--hhhcCcCcccHHHHHHHHH
Confidence 34444566788877665543 23322 23455566666532 333321111 1111116778999999999
Q ss_pred HHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002099 179 LLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (967)
Q Consensus 179 il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~ 256 (967)
++.=+| +|..+.-.+.+-++++|.-++++..++.+ .+.++.... .+ ++++..+ ..+++..-
T Consensus 143 vlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls~~al~-------~a----~~~i~vL--~~lN~~~v 205 (390)
T COG3004 143 VLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLSMAALG-------IA----ALAIAVL--AVLNRLGV 205 (390)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCccHHHHH-------HH----HHHHHHH--HHHHHhCc
Confidence 888776 89999999999999999999998877653 344433211 11 1111111 12222211
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHH-HHHHhHHHh
Q 002099 257 DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI-FILSGVVIA 335 (967)
Q Consensus 257 ~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Fv~~G~~i~ 335 (967)
.....-+.+....+..- ..-|++.-+|.++.|+++.-..+..-+|- ++..|....-+.|+..|+| |.-.|+.+.
T Consensus 206 ---~~l~~Y~~~gviLW~~v-lkSGVHATLAGVi~~f~IPl~~k~~~spl-~~leh~L~pwvaf~IlPlFaFaNAGvsl~ 280 (390)
T COG3004 206 ---RRLSPYLLVGVILWIAV-LKSGVHATLAGVILAFFIPLKTKEGESPL-ERLEHALHPWVAFFILPLFAFANAGVSLQ 280 (390)
T ss_pred ---hhhhHHHHHHHHHHHHH-HHhhhHHHHHHHHHHeeeeccCCCCCCcH-HHHHHHhhhhHHHHHHHHHHHccCCcccc
Confidence 11122222222233222 44688889999999998865333322332 2223333334556666655 555777664
Q ss_pred hhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChhhHHHHhh-ccchhhHHHHHh
Q 002099 336 EGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW-SGLRGAVALSLS 406 (967)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~-----~~~~~~~~~~~l~~-~g~RG~v~lala 406 (967)
-..+ +...-...+-+.+..+++|.++++.++..--++ ..+.+|++..-++. .|.-=..++-++
T Consensus 281 g~~~--------~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~ 349 (390)
T COG3004 281 GVSL--------SGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIA 349 (390)
T ss_pred cccc--------cccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHH
Confidence 2111 111223345666778899999998877654333 45788988877766 344333344433
No 55
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.44 E-value=0.00096 Score=67.47 Aligned_cols=176 Identities=11% Similarity=0.162 Sum_probs=115.2
Q ss_pred HHhhhccEEEEecCCCee-ecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcce
Q 002099 753 EPLELSTKEIMKLSGVTL-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSV 831 (967)
Q Consensus 753 ~~l~~~~~~~~~~~ge~I-~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~ 831 (967)
+.+....+...+.+|..+ +.+.+..+.+|++.+|.|.+. .+ ++ ..+.+..+-.+||-...+.+....+..+|.++
T Consensus 16 ~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~-d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~ 91 (207)
T PRK11832 16 KCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-RE-EN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGN 91 (207)
T ss_pred HHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ec-CC--eEEEeccCCeEeecccccCCCCceEEEEEcCc
Confidence 334555668888999996 665555678999999999994 32 33 45567778889999887777777789999999
Q ss_pred EEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH----Hhh--HHHHhhccHHHHHHHHHhccccccccCCeEEEeecC
Q 002099 832 VLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR----ILL--PQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH 905 (967)
Q Consensus 832 ~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~----l~~--~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 905 (967)
|+++.+|+++|.++++++. +|+.++.-++. +.. .+....-+++.+|..+ ..+..+..
T Consensus 92 c~~~~i~~~~~~~iie~~~-----LW~~~~~~l~~~~~~l~~rd~~l~g~~sY~~IR~~L---~eL~~~~e--------- 154 (207)
T PRK11832 92 CTGYHLPAKQTITLIEQNQ-----LWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATL---LSMIDWNE--------- 154 (207)
T ss_pred cEEEEeeHHHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH---HHHHhCCH---------
Confidence 9999999999999997664 45555554443 000 0111122333344322 11111110
Q ss_pred ceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCccccee
Q 002099 906 CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFY 957 (967)
Q Consensus 906 ~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~ 957 (967)
+.....+..+.|-.-..+|+|.+=+.+.+|++-|-..++=|+..
T Consensus 155 --------~~R~~I~v~~YIq~RT~LSRS~ImkILs~LKkGgYIei~rG~Li 198 (207)
T PRK11832 155 --------ELRSRIGVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLV 198 (207)
T ss_pred --------HHHhhccHHHHHHHhccccHHHHHHHHHHHhcCCCEEEecCEEe
Confidence 00111111234555688999999999999999998888777643
No 56
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.38 E-value=0.0054 Score=58.07 Aligned_cols=116 Identities=10% Similarity=0.066 Sum_probs=93.0
Q ss_pred CCChhhhHHhhhc-cEEEEecCCCeeecCCCC-CCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhh-----hc
Q 002099 746 ELPPSVREPLELS-TKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV-----LI 818 (967)
Q Consensus 746 ~l~~~~l~~l~~~-~~~~~~~~ge~I~~eGe~-~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~l-----l~ 818 (967)
+.|..+.+++..+ .+.....+|+.-.-||.. .|.+-++++|.++++..+ + .+..+.|-++..--.. -.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g---~--fLH~I~p~qFlDSPEW~s~~~s~ 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDG---R--FLHYIYPYQFLDSPEWESLRPSE 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECC---E--eeEeecccccccChhhhccccCC
Confidence 4688888999999 677888999999999864 789999999999998654 2 3345566655553322 24
Q ss_pred CCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 819 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 819 ~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
+.....|++|.++|+.++-+|+.+..++.++|-++.-+-.-+.+++++
T Consensus 89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~ 136 (153)
T PF04831_consen 89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAE 136 (153)
T ss_pred CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999988887777778875
No 57
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.72 E-value=1.4 Score=48.92 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=90.1
Q ss_pred cCCCCcHHHHHHHHHHHHHhhhc-cccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHH
Q 002099 55 RGTRVPYTVALLIIGIALGSLEY-GTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLA 133 (967)
Q Consensus 55 ~r~~lP~~v~lil~Gi~lG~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la 133 (967)
++.++++.+.-+++|+++|+... ..+. ...+++ ....+.++.+++.+ -|+++++.++.+.+.+.+...
T Consensus 27 ~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~Gi----~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~ 95 (335)
T TIGR00698 27 ADPALSALFLAILLGMVAGNTIYPQRDE---EKKRGV----LFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVAD 95 (335)
T ss_pred ccCCCcHHHHHHHHHHHHhccccccchh---hccchH----HHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHH
Confidence 45689999999999999998431 1111 111111 11223455555554 488999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHH
Q 002099 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQ 213 (967)
Q Consensus 134 ~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~ 213 (967)
+..+..+.+++.+...-.+ +++...++++|+=.|.=-..|+.+.-.-.+.+++-.....+--.+-+..++++|-.+..
T Consensus 96 ~~~v~~~~~~~~~~g~k~l--~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~ 173 (335)
T TIGR00698 96 TLILTSTFFLTVFLGSSRL--KLDKQMSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYH 173 (335)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCChhHHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHH
Confidence 6655555555444442233 78888888888555554444555544444555555555555555556667777766655
Q ss_pred HH
Q 002099 214 MV 215 (967)
Q Consensus 214 ~~ 215 (967)
+.
T Consensus 174 ~l 175 (335)
T TIGR00698 174 YA 175 (335)
T ss_pred HH
Confidence 44
No 58
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.66 E-value=0.027 Score=68.44 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=50.9
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccH
Q 002099 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDP 173 (967)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp 173 (967)
|..+++|+.....|+++|+..+..+++.++.+.+..++.-.+.+.....+ + ++++..++.+|..+++-..
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-~--g~~~~~a~~~gl~L~~~Ge 338 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-L--GVPRKQRRWFAVLLGQGGE 338 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--CCCHhHHHHHHHHHhcccc
Confidence 56778888888889999999988877776655555455554444433333 3 8999999999998887543
No 59
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.59 E-value=0.034 Score=67.41 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=52.7
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHH
Q 002099 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (967)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~a 175 (967)
-+..+++|+.....|+.+|++.+..+++.++.+.+..+++-.+.+..... .+ +++|..++.+|..+++....+
T Consensus 265 pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~--g~~~~~al~~g~~L~~~Gef~ 337 (601)
T PRK03659 265 PFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY--GLRSSERMQFAGVLSQGGEFA 337 (601)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh--CCCHHHHHHHHHHHhccccHH
Confidence 36678889888899999999999888776665555544454444333333 33 889999999998888765433
No 60
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.50 E-value=0.0021 Score=72.89 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=84.2
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEe-cCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMK-LSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~-~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
-++.++.|-|.+++-...++|+..+....+ .+|.+|...|+.-|+||+|++|.|++.+++ |+.. .+.-|+.||.
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~Pd--Gk~e---~l~mGnSFG~ 354 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPD--GKRE---ELKMGNSFGA 354 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCC--CceE---EeecccccCC
Confidence 357889999999999999999988765444 499999999999999999999999998765 5554 4667999997
Q ss_pred hhhhcCCcceeEEE-EcceEEEEEEcHHHHHHHHhh
Q 002099 814 YEVLIGKPYMSDMV-TDSVVLCFFIESDKILSILRS 848 (967)
Q Consensus 814 ~~ll~~~~~~atv~-A~~~~~l~~i~~~~f~~ll~~ 848 (967)
.--...+-....++ -..||+..+|...+|-+++..
T Consensus 355 ~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 355 EPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 54332222222222 367899999999999888743
No 61
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=95.87 E-value=4.5 Score=46.14 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=65.0
Q ss_pred CchhHHHHHHHHHHHHHHHH---hhcCCCCcHHHHHHHHH---HHHHhhhccccccccccccccccccccChhHHHHHHh
Q 002099 33 PTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIG---IALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFL 106 (967)
Q Consensus 33 ~~~~ll~~~~~l~~~~~~~~---l~~r~~lP~~v~lil~G---i~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l 106 (967)
....+...++++++|..++. +.+|+.+|.++.==+++ ..+++...+.. ...|.+ +...++
T Consensus 5 ~~~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~-------------~~fd~~-l~~~lm 70 (398)
T TIGR00210 5 IYATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTE-------------VNFDFS-LRDPLM 70 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEE-------------EEcChh-HHHHHH
Confidence 34556677888888988776 56899999986532232 33444322110 123332 223333
Q ss_pred HHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHcCCCCcHHHHHHhh
Q 002099 107 PALLFESSFAMEVHQIKRCLVQMILLAGPGVMI---STFFLGAALKLTFPYDWSWKTSLLLG 165 (967)
Q Consensus 107 ~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i---~~~~~~~~~~~~~~~~~~~~~alllg 165 (967)
.+..=..|+..+++.+|+-.++.+.+.....+. ..++ |..+..++ |.+...+++.|
T Consensus 71 ~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~v-Gv~la~~~--gl~P~~Gll~g 129 (398)
T TIGR00210 71 LIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAV-GIGMASLL--GQAPLMGLLAG 129 (398)
T ss_pred HHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHH-HHHHHHHc--CCChHHHHHhh
Confidence 333334588889999999888886665553332 2222 33333333 66666666654
No 62
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.76 E-value=3.9 Score=44.66 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHH--hhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhh
Q 002099 37 VIFVGISLVLGIACRH--LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (967)
Q Consensus 37 ll~~~~~l~~~~~~~~--l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g 114 (967)
+++.+.+..++..++. .....++|.++.-++.||++|.+..... ....++ ......++.+++.+ -|
T Consensus 13 l~l~~~ia~~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~----~~~~GI----~fs~k~LLr~gIvL----lG 80 (334)
T COG2855 13 LLLSALIAGLAMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPA----QTSAGI----TFSSKKLLRLGIVL----LG 80 (334)
T ss_pred HHHHHHHHHHHHHHhchHHhhhcCchHHHHHHHHHHHHhccccchh----hhccch----hhhHHHHHHHHHHH----Hc
Confidence 3344444444554444 3356789999999999999996532111 112222 23455666666554 48
Q ss_pred hcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCC-Ccchhhhh
Q 002099 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGA-SKKLNTII 193 (967)
Q Consensus 115 ~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~-~~~l~~li 193 (967)
+++++.++...+.+.+.+.+..+.. +++.++.+.-++ ++|+..+++.|+-.|.=...|+.++---.+. +++...-+
T Consensus 81 ~~ltl~~i~~~G~~~v~~~~~~l~~-t~~~~~~lg~~l--gld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aI 157 (334)
T COG2855 81 FRLTLSDIADVGGSGVLIIAITLSS-TFLFAYFLGKLL--GLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAI 157 (334)
T ss_pred ceeeHHHHHHcCccHHHHHHHHHHH-HHHHHHHHHHHh--CCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceeh
Confidence 8999999999888887765554444 444455444454 8999999999976666666666555433343 34444444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 002099 194 EGESLMNDGTAIVVYQLFFQMV 215 (967)
Q Consensus 194 ~gesl~nD~~aivlf~~~~~~~ 215 (967)
-.-.+++- +++++|-.+..+.
T Consensus 158 a~V~lfgt-ia~llyP~l~~~l 178 (334)
T COG2855 158 AVVVLFGT-LAMLLYPLLYPLL 178 (334)
T ss_pred hhHHHHHH-HHHHHHHHHHHHh
Confidence 44455543 4455555544443
No 63
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.63 E-value=0.24 Score=59.84 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=47.1
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHH
Q 002099 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (967)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~a 175 (967)
+..+|+|+.....|+++|+..+.++...++.+.+..++.-++.+.. ....+ +++|..++.+|..+++.....
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~-~~~~~--g~~~~~a~~~gl~l~~~Gef~ 348 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF-LVRLF--GHSRRTALTIAASLAQIGEFA 348 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh--CCChhhHHHHHHHHhcccchH
Confidence 4567889888889999999988876554443333333333333222 22223 789999999999888755433
No 64
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.44 E-value=0.13 Score=64.61 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=44.1
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHH
Q 002099 101 LLAVFLPALLFESSFAMEVHQIKRC--LVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (967)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~--~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~a 175 (967)
...+|+|+.....|+++|+..+... +..++.+.+.+++.-.+. +++...++ ++||..++.+|.++++-.-+.
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g-~~l~a~~~--g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMG-TIIIAFFY--TMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHh--CCCHHHHHHHHHHHhcccHHH
Confidence 3567899999999999999887532 112222222222222222 22222233 899999999999998865433
No 65
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.06 E-value=0.19 Score=60.18 Aligned_cols=134 Identities=22% Similarity=0.215 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 35 DAVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 35 ~~ll~~~~~l~~~~~~~~l~-~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
+.++.+++++.+|++++++- +.+++-.+.+-+++|+++|.+.. .+ |+.+..+++.+.+|..
T Consensus 10 ~p~l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~-----------------~i-~~~v~~~gl~lFvy~v 71 (562)
T TIGR03802 10 NPEIALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI-----------------QI-DPGVKAVFFALFIFAI 71 (562)
T ss_pred CHHHHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC-----------------CC-ChHHHHHHHHHHHHHh
Confidence 45777888888898888875 56777777899999999997531 12 3457789999999999
Q ss_pred hhcCCHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCc
Q 002099 114 SFAMEVHQI---KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASK 187 (967)
Q Consensus 114 g~~~~~~~l---~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~ 187 (967)
|++.-..-| |+...+..++++..+++.. ++.+.+.+++.++.+....++-||.-++..-.++...+.+++.+.
T Consensus 72 G~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~~-~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~~~ 147 (562)
T TIGR03802 72 GYEVGPQFFASLKKDGLREIILALVFAVSGL-ITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGLSP 147 (562)
T ss_pred hhccCHHHHHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcCCCc
Confidence 999887654 5555566666665555444 445556666633444566777777666555555555566666543
No 66
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=94.53 E-value=0.64 Score=53.28 Aligned_cols=118 Identities=16% Similarity=0.225 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHH-HHhHHHhhhhhhcCCHHHH
Q 002099 44 LVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLA-VFLPALLFESSFAMEVHQI 122 (967)
Q Consensus 44 l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~l~~llF~~g~~~~~~~l 122 (967)
+.+......+++..+++++++-+++|+++.-..+.-. + ...+-+-+.+ +|+|+.....|+++|++.+
T Consensus 228 l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~----~--------l~~~i~~~~~~~fiplFFi~vG~~~dl~~l 295 (397)
T COG0475 228 LLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKH----E--------LEEKIEPFGDGLFIPLFFISVGMSLDLGVL 295 (397)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchH----H--------HHHHHHhHHhHHHHHHHHHHhhHHcCHHHH
Confidence 3333444455566789999999999998877542200 0 1122345777 8999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHH
Q 002099 123 KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (967)
Q Consensus 123 ~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av 176 (967)
..+...++.+....++.-.....+.. ..+ |++...++..|...++.-..+.
T Consensus 296 ~~~~~~~l~~~~~~i~~K~~~~~~~~-~~~--g~~~~~~~~~g~~~~~~ge~~~ 346 (397)
T COG0475 296 LENLLLILLLVALAILGKILGAYLAA-RLL--GFSKRLALGIGLLLRQGGEFAF 346 (397)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHH-HHH--cCcHHHHHHHHhhhhhhhHHHH
Confidence 99988866655554444444433333 333 6788888888887777544444
No 67
>PRK03818 putative transporter; Validated
Probab=94.43 E-value=1 Score=53.87 Aligned_cols=122 Identities=16% Similarity=0.233 Sum_probs=75.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccCh---hHHHHHHhH
Q 002099 32 NPTDAVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLP 107 (967)
Q Consensus 32 ~~~~~ll~~~~~l~~~~~~~~l~-~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~i~l~ 107 (967)
+..+.++.+++.+.+|.+++.+- +.+++- +.+-+++|+++|..... ++ ..+++ +++-.+++.
T Consensus 3 ~~~~~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~-------~~------~~~~~~~~~~~~~~gl~ 68 (552)
T PRK03818 3 DIALTVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQ-------FG------LTLDSDMLHFIQEFGLI 68 (552)
T ss_pred chhHHHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccc-------cC------cccChHHHHHHHHHHHH
Confidence 34456788888888888888753 334444 36778888888874210 00 11222 357789999
Q ss_pred HHhhhhhhcCCHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc
Q 002099 108 ALLFESSFAMEVH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL 168 (967)
Q Consensus 108 ~llF~~g~~~~~~---~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgail 168 (967)
+.+|..|++.-.. .+|+...+...+++..++++.++ ++.+++++.++++.....+-|+.-
T Consensus 69 lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~aGa~T 131 (552)
T PRK03818 69 LFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLV-TAILHKLFGIPLPVMLGIFSGAVT 131 (552)
T ss_pred HHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHhhcccc
Confidence 9999999998765 44566666667776666665555 555566663333333444444433
No 68
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.39 E-value=0.55 Score=46.62 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCC
Q 002099 41 GISLVLGIACRHLL--RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME 118 (967)
Q Consensus 41 ~~~l~~~~~~~~l~--~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~ 118 (967)
++.+.+|.+++.+. +.+++-...+-+++|+++|......+. . . ..--++.+.++++.+.++..|++.-
T Consensus 3 fl~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~----~---~---~~~~~~~l~~~GL~lFl~~VGl~aG 72 (169)
T PF06826_consen 3 FLGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPI----F---L---PISAPSFLRQLGLALFLAAVGLSAG 72 (169)
T ss_pred hHHHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCC----C---C---CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666554 556667777889999999987421110 0 0 1223567888999999999999866
Q ss_pred HH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHHhhcc
Q 002099 119 VH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW--KTSLLLGGL 167 (967)
Q Consensus 119 ~~---~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~--~~alllgai 167 (967)
.. .+|+...+...+++.-++++.++.....++++ ++++ ....+-|+.
T Consensus 73 ~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~--~l~~~~~~G~~aGa~ 124 (169)
T PF06826_consen 73 PGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLF--KLNPGIAAGILAGAL 124 (169)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHccc
Confidence 54 55667778888888877777777666666566 4443 334444443
No 69
>PRK04972 putative transporter; Provisional
Probab=94.31 E-value=0.7 Score=55.29 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 35 DAVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 35 ~~ll~~~~~l~~~~~~~~l~-~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
..++.+++.+.+|++++.+- +.+++-...+-+++|+++|.+.. .+ ++.+..+++.+.+|..
T Consensus 12 ~~~~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~-----------------~~-~~~~~~~gl~lF~~~v 73 (558)
T PRK04972 12 NYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHF-----------------SI-NTDALNLGFMLFIFCV 73 (558)
T ss_pred CChHHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCC-----------------CC-ChHHHHHHHHHHHHHH
Confidence 34677778888888888765 55677777789999999997531 12 3345689999999999
Q ss_pred hhcCCHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHHhhcccccccHHHHHHHHhhc
Q 002099 114 SFAMEVH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW--KTSLLLGGLLSATDPVAVVALLKEL 183 (967)
Q Consensus 114 g~~~~~~---~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~--~~alllgails~Tdp~av~~il~~l 183 (967)
|++.-.. .+|+...+...+++..++++.++ ++.+.+++ ++++ ...++-|+.-++..-.++...+++.
T Consensus 74 G~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~G~~aGa~T~tp~l~~a~~~~~~~ 145 (558)
T PRK04972 74 GVEAGPNFFSIFFRDGKNYLMLALVMVGSALVI-ALGLGKLF--GWDIGLTAGMLAGSMTSTPVLVGAGDTLRHS 145 (558)
T ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHh--CCCHHHHHHHhhccccCcHHHHHHHHHHhcc
Confidence 9987765 44566666777776666665555 34444455 4554 4455555544433333333334433
No 70
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=93.96 E-value=14 Score=41.99 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHH
Q 002099 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGV 137 (967)
Q Consensus 58 ~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv 137 (967)
.+|.++...+.|+++..+... + .+. ...--+.+....+|.-++.-=++.|+++++|..++.+. ++...
T Consensus 24 ~l~~~vl~~~~~~~lsnlgli--~-----~p~----~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~ 91 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLGLI--D-----SPA----SSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIG 91 (378)
T ss_pred hcCHHHHHHHHHHHHHHCCCc--C-----CCC----cchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHH
Confidence 689999999999999886421 0 000 01112566677777777777788999999998877653 33333
Q ss_pred HHHHHHHHHHHHHHcC
Q 002099 138 MISTFFLGAALKLTFP 153 (967)
Q Consensus 138 ~i~~~~~~~~~~~~~~ 153 (967)
.+++++.+.+.+++++
T Consensus 92 ~~g~viG~~va~~l~~ 107 (378)
T PF05684_consen 92 AVGTVIGAVVAFLLFG 107 (378)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444445555553
No 71
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.50 E-value=11 Score=41.85 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=73.5
Q ss_pred cChhHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHcCC--CCcHHHHHHhhccccc
Q 002099 96 IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTF---FLGAALKLTFPY--DWSWKTSLLLGGLLSA 170 (967)
Q Consensus 96 ~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~---~~~~~~~~~~~~--~~~~~~alllgails~ 170 (967)
.++|....+++..+.|..|++++.+++++..++.-.... +...+++ ++++....+.+. +-.+...+++-+++-+
T Consensus 27 ~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~-~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPt 105 (313)
T PF13593_consen 27 IKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLF-VQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPT 105 (313)
T ss_pred cchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCc
Confidence 455677778888999999999999999886554422211 1122222 223333333320 1122333333333333
Q ss_pred ccHHHHHHHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHc-cC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 171 TDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVL-GK--SFGWGAIIKFLAQVSLGAVGMGLAFGIAS 247 (967)
Q Consensus 171 Tdp~av~~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~-~~--~~~~~~~~~~~~~~~~g~i~~G~~~g~~~ 247 (967)
| -...+..-+.-|-+.. .....+.++...++++.=+.+.+.. ++ +.+..+.+..+...++.-.++|-++....
T Consensus 106 T-v~S~v~~T~~AgGN~a---~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~~~ 181 (313)
T PF13593_consen 106 T-VSSSVVLTRLAGGNVA---LALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRRWV 181 (313)
T ss_pred h-hhHHHHHHHHcCCCHH---HHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222223333332222 2334455566667766666665554 22 23444544444444444444555555444
Q ss_pred HHHHh
Q 002099 248 VLWLG 252 (967)
Q Consensus 248 ~~~l~ 252 (967)
..+.+
T Consensus 182 ~~~~~ 186 (313)
T PF13593_consen 182 PKWVA 186 (313)
T ss_pred HHHHH
Confidence 44433
No 72
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.88 E-value=3.4 Score=40.58 Aligned_cols=124 Identities=20% Similarity=0.119 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhcCCCCcH--HHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHH
Q 002099 43 SLVLGIACRHLLRGTRVPY--TVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVH 120 (967)
Q Consensus 43 ~l~~~~~~~~l~~r~~lP~--~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~ 120 (967)
.+.++.+.+.+++++++|. .++-++++.++.... .. ...-|..+......++-...|.+++..
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~--------~~-------~~~~P~~~~~~~qviiG~~iG~~f~~~ 67 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAG--------GL-------EITLPPWLLALAQVVIGILIGSRFTRE 67 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcC--------Cc-------cCCCCHHHHHHHHHHHHHHHHccCCHH
Confidence 3455666667778888884 333333333333211 00 012367788888888888999999988
Q ss_pred HHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCC
Q 002099 121 QIKRCLVQMI--LLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGAS 186 (967)
Q Consensus 121 ~l~~~~~~i~--~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~ 186 (967)
.+++..+... +..+..+++..++.++.++... ++++.++++ |. +|=....+..+-+++|.+
T Consensus 68 ~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~--~~~~~ta~L-a~--~PGGl~~m~~~A~~~gad 130 (156)
T TIGR03082 68 VLAELKRLWPAALLSTVLLLALSALLAWLLARLT--GVDPLTAFL-AT--SPGGASEMAALAAELGAD 130 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHH-Hh--CCchHHHHHHHHHHhCCC
Confidence 7766443332 2233333344445566666655 789988864 32 333333333444555553
No 73
>COG0679 Predicted permeases [General function prediction only]
Probab=92.52 E-value=20 Score=39.67 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=76.0
Q ss_pred CcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHH
Q 002099 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIF 361 (967)
Q Consensus 282 ~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (967)
.++.+=+.++|+.++..+- .. .....+..+.++....|+..+.+|+.+...... ......+......
T Consensus 167 ~nP~i~a~i~g~~~~~~~i-~l----P~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~--------~~~~~~~~~~~~~ 233 (311)
T COG0679 167 TNPLIIALILGLLLNLLGI-SL----PAPLDTAVDLLASAASPLALIALGLSLAFLKLK--------GSKPPIILIALSL 233 (311)
T ss_pred hCcHHHHHHHHHHHHHcCC-CC----cHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhc--------cccchhHHHHHHH
Confidence 4566666677777764221 11 236677888899999999999999999763221 1222222211111
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccCCCCcccccccccchhhhhhhhhhhhhhc
Q 002099 362 VQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIV 441 (967)
Q Consensus 362 ~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i 441 (967)
=++.-++.++....+ ++..-.+....++.-+.|.+..+..+|.....+ . -.+...+++|.++
T Consensus 234 kll~~Pl~~~~~~~~---~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~-----------~----~laa~~i~ist~l 295 (311)
T COG0679 234 KLLLAPLVALLVAKL---LGLSGLALQVLVLLSAMPTAVNAYVLARQYGGD-----------P----RLAASTILLSTLL 295 (311)
T ss_pred HHHHHHHHHHHHHHH---cCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCC-----------h----HHHHHHHHHHHHH
Confidence 123333333222222 222333444444444667777777777653221 1 1244566777777
Q ss_pred cccchHHHHhhc
Q 002099 442 NGSTTQYILHLL 453 (967)
Q Consensus 442 ~g~t~~~l~~~l 453 (967)
.-.++|.+.-.+
T Consensus 296 s~~t~p~~~~~l 307 (311)
T COG0679 296 SLLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHHHHH
Confidence 777776665443
No 74
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=91.82 E-value=20 Score=39.23 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=74.9
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHH
Q 002099 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTF---FLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (967)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~---~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~ 177 (967)
....++.+++|..|+.+..+++++..+.-.... .|++.+++ +.|+.+...++ ...-+..|.++-.+-|..+.
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vl-igl~~qfvlmPlla~~~~~~~~----l~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLVL-IGLAAQFVLMPLLALLLAKLFP----LPPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHHHHHcC----CCHHHHHhHHheeeCCCchh
Confidence 457889999999999999999988654433221 12222222 23444444443 33444555444444444444
Q ss_pred HHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002099 178 ALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKS--FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFI 254 (967)
Q Consensus 178 ~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~ 254 (967)
+..-..-+..++ .+-.+...++...++++.=+.+.+..++. .+.++....+....+.-+++|.++......|.++.
T Consensus 114 S~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 114 SNAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322110011111 12223334444555555555555544443 34555555545555555566776666655555543
No 75
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=91.08 E-value=0.89 Score=46.15 Aligned_cols=89 Identities=21% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCC-----HHHHHHhhhhHHHHHHHHHH
Q 002099 64 ALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME-----VHQIKRCLVQMILLAGPGVM 138 (967)
Q Consensus 64 ~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~-----~~~l~~~~~~i~~la~~gv~ 138 (967)
+.+++|+++|...... ...++......|..++|..|.++- ++.+++..++++.+.+..++
T Consensus 3 ~~li~Gi~lG~~~~~~---------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIl 67 (191)
T PF03956_consen 3 IALILGILLGYFLRPP---------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATIL 67 (191)
T ss_pred eeHHHHHHHHHHhccc---------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4578899999864210 011255777889999999999863 44566677888887766544
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHhhccccc
Q 002099 139 ISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA 170 (967)
Q Consensus 139 i~~~~~~~~~~~~~~~~~~~~~alllgails~ 170 (967)
- .++.++++..++ ++|+..++.+|+=..-
T Consensus 68 G-Sllgg~l~~~ll--~~~~~~~lav~sG~Gw 96 (191)
T PF03956_consen 68 G-SLLGGLLASLLL--GLSLKESLAVASGFGW 96 (191)
T ss_pred H-HHHHHHHHHHHh--cCCHHHHHHHHccCcH
Confidence 4 444466666665 7899998888875443
No 76
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=91.00 E-value=3.9 Score=41.58 Aligned_cols=108 Identities=20% Similarity=0.285 Sum_probs=47.8
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHHhhcccccccHHHHHHHH
Q 002099 104 VFLPALLFESSFAMEVHQIKRCLVQMIL--LAGPGVMISTFFLGAALK-LTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180 (967)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~i~~--la~~gv~i~~~~~~~~~~-~~~~~~~~~~~alllgails~Tdp~av~~il 180 (967)
+.+..++|..|++++++++++..++.-. .++..-++-.=++++.+. .+++ ....+..|.++.+..|.+..+..
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~----~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLP----LSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT------HHHHHHHHHHHHS-B-THHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHhcCCcHHHHHH
Confidence 4577889999999999999987655332 222222221212233333 3332 22334444333333333333222
Q ss_pred -hhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHcc
Q 002099 181 -KELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (967)
Q Consensus 181 -~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~ 217 (967)
..+ ...+.. +-.+-..+|...+.++.-+...+..+
T Consensus 78 ~t~l-~~Gd~~-ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 78 FTYL-AGGDVA-LSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHH-TT--HH-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHH-hCCCcc-cccceeeHHHHHHHHHHHHHHHHHhc
Confidence 111 112222 34444566666666665555554433
No 77
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.93 E-value=0.27 Score=56.54 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=75.1
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.+.|++...|++|-...++.++...+...++...++|+.|+.+.+||++++|.|-+... .+-|-.+||-.
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gq----------i~mp~~~fgkr 105 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQ----------IYMPYGCFGKR 105 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecc----------eecCccccccc
Confidence 35678889999999999999999999999999999999999999999999999987521 23344567764
Q ss_pred hhhcCCcceeEEEEcceEEEEEE
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i 837 (967)
+|..|.+++-.+++++..++
T Consensus 106 ---~g~~r~~nclllq~semivi 125 (1283)
T KOG3542|consen 106 ---TGQNRTHNCLLLQESEMIVI 125 (1283)
T ss_pred ---cccccccceeeecccceeee
Confidence 46678899999999998888
No 78
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=90.39 E-value=6.3 Score=43.30 Aligned_cols=164 Identities=20% Similarity=0.215 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHH---hhCCCcchHHHHHHHHHHhh-hhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 002099 262 IALTLAVSYIAFFTAQ---EGADVSGVLTVMTLGMFYAA-VARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG 337 (967)
Q Consensus 262 ~~l~l~~~~~~~~~a~---e~lg~Sgila~~~aGl~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~ 337 (967)
+.++++++..+++++. ...+.++.+-+.+.|+.++| .-.. ++ ..++-.+..+..+.-.=-+++|..++..
T Consensus 3 l~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~--~~----~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~ 76 (305)
T PF03601_consen 3 LLLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGL--PA----RFKPGIKFSSKKLLRLGIVLLGFRLSFS 76 (305)
T ss_pred HHHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCC--cH----HHHhHHHHHHHHHHHHHHHHHCccccHH
Confidence 3566777788888874 35789999999999999997 2211 11 1111111111111122236678877654
Q ss_pred hcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhc-cchhhHHHH-HhhhhcccCCC
Q 002099 338 ILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALS-LSLSVKRSSGG 415 (967)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~la-lal~v~~~~~~ 415 (967)
.+.. ..+..++...+.+ ..++.+..++.+...+++.+.+..++-| +.=|+-+.+ .+-.++...
T Consensus 77 ~i~~--------~G~~~~~~~~~~v-----~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-- 141 (305)
T PF03601_consen 77 DILA--------LGWKGLLIIIIVV-----ILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-- 141 (305)
T ss_pred HHHH--------hCccHHHHHHHHH-----HHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC--
Confidence 4311 1111111111111 1122223355534468899999999886 445554433 223322211
Q ss_pred CcccccccccchhhhhhhhhhhhhhccccchHHHHhhcCCC
Q 002099 416 SSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMD 456 (967)
Q Consensus 416 ~~~~~~~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~~l~l~ 456 (967)
.+ + .++.++|.+--.+.-...|.+.+++++.
T Consensus 142 --------~~-~-a~ava~V~lfg~vam~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 142 --------ED-V-AYAVATVFLFGTVAMFLYPLLGHALGLS 172 (305)
T ss_pred --------Cc-e-eeeehHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 1 1122222222223345589999999987
No 79
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=88.45 E-value=7.9 Score=42.07 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=50.7
Q ss_pred HhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhh--cccccccHHHHH
Q 002099 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG--GLLSATDPVAVV 177 (967)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllg--ails~Tdp~av~ 177 (967)
.+|+..|.-|.++|++.+.+.+.+.+++++..++++....-++- -++ +.+...+++.| +=-+.--|+++.
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~-rll--g~~~~~g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFAD-RLV--GGTGIAGAAASSTAGNAVATPLAIA 268 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHh--CCChhHHHHHHHHhhHHHHHHHHHH
Confidence 78888999999999999999999999999887777766644444 333 67777777777 333333444443
No 80
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.38 E-value=21 Score=40.87 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=106.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhcC--CCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhh
Q 002099 34 TDAVIFVGISLVLGIACRHLLRG--TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLF 111 (967)
Q Consensus 34 ~~~ll~~~~~l~~~~~~~~l~~r--~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF 111 (967)
.+.+..+.+.+.+|.......+. ..+|.-+.-+++|+++....-... ...+ .+-.-+.+..+.+=+++-
T Consensus 218 i~~l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~--~~~~-------~~~~i~~I~~~sLdlfl~ 288 (398)
T TIGR00210 218 IETIALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKK--FPWV-------AERAVSVIGNVSLSLFLA 288 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhC--cccc-------chHHHHHHHHHHHHHHHH
Confidence 33455667777778777776654 789999999999999988642110 0000 001224566777777787
Q ss_pred hhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH----HhhcccccccHHHH--HHHHhhcCC
Q 002099 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSL----LLGGLLSATDPVAV--VALLKELGA 185 (967)
Q Consensus 112 ~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~al----llgails~Tdp~av--~~il~~l~~ 185 (967)
.+=..+++..+...+.|.+.+.+.+++++.+..-++.+..++ =+...|. ..|--+.+|-...+ -++-++.|.
T Consensus 289 ~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg--~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~ 366 (398)
T TIGR00210 289 IALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMG--KDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP 366 (398)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcc--chHHHHHHhcccccccccchHHHHHHHHHHHhccCC
Confidence 777899999999999999999999999998777676666653 2333333 45555555544433 356677773
Q ss_pred -CcchhhhhhhhhhHHHHHHHHHHHHH
Q 002099 186 -SKKLNTIIEGESLMNDGTAIVVYQLF 211 (967)
Q Consensus 186 -~~~l~~li~gesl~nD~~aivlf~~~ 211 (967)
|+-.--.=.--+.+-|.+..++...+
T Consensus 367 s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 367 SHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred CCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 33333333345555665554444443
No 81
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=88.11 E-value=4.1 Score=46.10 Aligned_cols=133 Identities=10% Similarity=0.081 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhc-CC
Q 002099 40 VGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA-ME 118 (967)
Q Consensus 40 ~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~-~~ 118 (967)
......+|.+++.+ +++|..+.+++.=+++-... .+.+.++.-...-.+++..-+.+++++-.|.. +|
T Consensus 255 a~~~y~~G~ll~~~---i~ih~~a~mIi~~~i~K~~~--------lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~ 323 (414)
T PF03390_consen 255 ACSFYILGVLLSKL---IGIHAYAWMIILVAIVKAFG--------LVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTD 323 (414)
T ss_pred HHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence 33344455555544 49999988887766665432 11111110001113567778899999999999 99
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccc---cccHHHHHHHHhhcC
Q 002099 119 VHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS---ATDPVAVVALLKELG 184 (967)
Q Consensus 119 ~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails---~Tdp~av~~il~~l~ 184 (967)
|+++.+.+....++-+..+++...++++....++. -+|...|+.-|-+.+ -|--++|.+.-++++
T Consensus 324 l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g-~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 324 LNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVG-FYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 99999988777777777777777777777766663 246666666663433 366667777767665
No 82
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=87.97 E-value=49 Score=36.86 Aligned_cols=25 Identities=4% Similarity=0.126 Sum_probs=20.3
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhhhh
Q 002099 104 VFLPALLFESSFAMEVHQIKRCLVQ 128 (967)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~ 128 (967)
+++.+++|..|++++.+++++..++
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~ 71 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKD 71 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcC
Confidence 4566789999999999999886554
No 83
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=87.81 E-value=4.6 Score=44.71 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhc-CCHHHHHHhh-hhHHHHHHH
Q 002099 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA-MEVHQIKRCL-VQMILLAGP 135 (967)
Q Consensus 58 ~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~-~~~~~l~~~~-~~i~~la~~ 135 (967)
++|+.+..+++|+++-.... +.+.+..-...-.+++...+.+++++-.|+. +|++++-+.+ .+.+.+.+.
T Consensus 203 ~Ih~~v~mII~~vi~k~~gl--------lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~ 274 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGL--------VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLS 274 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHH
Confidence 68999999999999876532 1111110001112366677888999988987 8999999988 555555444
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccc---cccHHHHHHHHhhcC
Q 002099 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS---ATDPVAVVALLKELG 184 (967)
Q Consensus 136 gv~i~~~~~~~~~~~~~~~~~~~~~alllgails---~Tdp~av~~il~~l~ 184 (967)
+ ++..++.++++..++. -+|...|+.-|.+.+ -|--++|.+.-++++
T Consensus 275 ~-Vlg~ii~s~lvGKllG-~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 275 V-VVAMILGGAFLGKLMG-MYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred H-HHHHHHHHHHHHHHhC-CChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 4 4444444555555553 256667776663433 366666777667665
No 84
>PRK05326 potassium/proton antiporter; Reviewed
Probab=87.21 E-value=5.3 Score=48.26 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=40.0
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcc
Q 002099 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGL 167 (967)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgai 167 (967)
.+..++.|++.+..|+.+|++.+.......+.+++..+++.=.+..+... .+++++|.+++.+|-.
T Consensus 274 ~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~--~~~~~~~~e~~~i~~~ 339 (562)
T PRK05326 274 GLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSL--LPFRFNLREKLFISWV 339 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCCCHhhhheeeee
Confidence 45567778888888999999988766665555543322222111111111 2347888888877753
No 85
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=86.82 E-value=56 Score=36.30 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHH
Q 002099 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTF 142 (967)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~ 142 (967)
-|++++++.|+--+=+.+|.+.+-|.+...+...+.|++...+
T Consensus 111 nFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~ 153 (438)
T COG3493 111 NFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAA 153 (438)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4889999999999999999999988877766655555554443
No 86
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=85.59 E-value=62 Score=35.61 Aligned_cols=183 Identities=21% Similarity=0.212 Sum_probs=91.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhh---hhHHHH
Q 002099 56 GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCL---VQMILL 132 (967)
Q Consensus 56 r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~---~~i~~l 132 (967)
|.--+.+...+++|+.+|....+..+.+|.. ..-.-+.-..+++...++--=.++|++++++.. |+..+.
T Consensus 14 k~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~-------~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~ls 86 (342)
T COG0798 14 KYLTLWVFLAIAIGILLGVHFPGLAQLLGKL-------EFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILS 86 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhcccc-------eeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHH
Confidence 3334455667888999987654322212211 011123334456666666666788998887644 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCc-HHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHH
Q 002099 133 AGPGVMISTFFLGAALKLTFPYDWS-WKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211 (967)
Q Consensus 133 a~~gv~i~~~~~~~~~~~~~~~~~~-~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~ 211 (967)
-+...++.-++....++.+++ +.| ...++++-.+.=+|+-+.+-+ + +.+.=.....+--.+||...+++|...
T Consensus 87 L~~Nwii~P~lm~~la~~fl~-~~pey~~GlILlglApC~aMVivw~---~--La~Gd~~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 87 LFVNWIIGPLLMFALAWFFLP-DEPEYRAGLILLGLAPCIAMVIVWS---G--LAKGDRELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhhHHHHHHHH---h--hccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 444444444443444444443 344 333333333333333333322 2 233333444556678999999988766
Q ss_pred HHHHcc---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002099 212 FQMVLG---KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIF 255 (967)
Q Consensus 212 ~~~~~~---~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~ 255 (967)
..+..+ .+.++..++..+... +| +=++.|.+.++++.+..
T Consensus 161 ~~~~l~v~~~~v~~~~i~~Sv~ly-l~---iPli~G~lTR~i~~k~k 203 (342)
T COG0798 161 GKFFLGVISISVPFWTIAKSVLLY-LG---IPLIAGVLTRYILIKKK 203 (342)
T ss_pred HHHHHhhccccccHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhc
Confidence 554432 345566555443321 22 33455555555555443
No 87
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=85.50 E-value=20 Score=39.82 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCcchHHHHHHHHHHhhh
Q 002099 262 IALTLAVSYIAFFTAQE----GADVSGVLTVMTLGMFYAAV 298 (967)
Q Consensus 262 ~~l~l~~~~~~~~~a~e----~lg~Sgila~~~aGl~l~~~ 298 (967)
+.+++.+++.+++++.. ..+.|..+-+.+.|++++|.
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 34555666666666621 24789999999999999883
No 88
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=85.45 E-value=65 Score=35.74 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=80.8
Q ss_pred CcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHH
Q 002099 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIF 361 (967)
Q Consensus 282 ~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (967)
.++++-+.++|++++..+-+ ....+.+..+.++....++--+.+|+.+..... ..++......
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~-----lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~---------~~~~~~~~~~--- 243 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFK-----MPGLILKSISILSGATTPMALFSLGLALSPRKI---------KLGVRDAILA--- 243 (321)
T ss_pred hCCChHHHHHHHHHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhh---------ccChHHHHHH---
Confidence 46667777888888753321 235667788889999999999999988754322 1222222222
Q ss_pred HHHHHHHHHHHH-HHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccCCCCcccccccccchhhhhhhhhhhhhh
Q 002099 362 VQVSRLFVVGTL-YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLI 440 (967)
Q Consensus 362 ~~v~R~l~v~~~-~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~ 440 (967)
.+.|.+..=.. +.....++.....+...++..+.|-+..+..+|.....+ .-.+..++++|.+
T Consensus 244 -~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~---------------~~~aa~~v~~sT~ 307 (321)
T TIGR00946 244 -LIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVD---------------VELASTAVTLSTV 307 (321)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCC---------------HHHHHHHHHHHHH
Confidence 23354332111 111122333445566777777788888877777652211 0234446677777
Q ss_pred ccccchHHHHhhc
Q 002099 441 VNGSTTQYILHLL 453 (967)
Q Consensus 441 i~g~t~~~l~~~l 453 (967)
+.-.|+|.++..+
T Consensus 308 ls~~tlp~~~~l~ 320 (321)
T TIGR00946 308 LSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766544
No 89
>COG2431 Predicted membrane protein [Function unknown]
Probab=84.89 E-value=5.5 Score=41.94 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCC---HH--HHHHhhhhHHHHHHH
Q 002099 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME---VH--QIKRCLVQMILLAGP 135 (967)
Q Consensus 61 ~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~---~~--~l~~~~~~i~~la~~ 135 (967)
...+.++.|+++|.+.... ..+++...+..|-.++|..|.++. +. +.+-| |+.+.+++.
T Consensus 108 k~~~~vl~g~~~G~l~~~~---------------~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i 171 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF---------------LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFI 171 (297)
T ss_pred HHHHHHHHHHHHHHHhccc---------------ccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHH
Confidence 4567788888888764221 123666778888999999999877 22 22223 444555544
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc
Q 002099 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL 168 (967)
Q Consensus 136 gv~i~~~~~~~~~~~~~~~~~~~~~alllgail 168 (967)
++++.+..|.+..+++ ++|+..++.+++-.
T Consensus 172 -~ilssliGG~iaa~~l--~lpl~~~lAmasG~ 201 (297)
T COG2431 172 -TLLSSLIGGLIAAFLL--DLPLTTGLAMASGF 201 (297)
T ss_pred -HHHHHHHHHHHHHHHH--hccHHHHHHHHhcc
Confidence 4556666677766666 78888877776543
No 90
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=84.49 E-value=17 Score=41.15 Aligned_cols=113 Identities=17% Similarity=0.284 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHhhc--CCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccCh---hHHHHHHhHHHh
Q 002099 36 AVIFVGISLVLGIACRHLLR--GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPALL 110 (967)
Q Consensus 36 ~ll~~~~~l~~~~~~~~l~~--r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~i~l~~ll 110 (967)
.+..+.+.+.+|.....+.+ .+.+|.-+.-+++|+++-...-... . ..+|. +.+..+.+=+++
T Consensus 222 ~l~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~----~--------~~id~~~i~~I~~~sL~~fl 289 (368)
T PF03616_consen 222 HLALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTG----K--------YKIDRKTIDRISGISLDLFL 289 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhC----c--------ccCCHHHHHHHHHHHHHHHH
Confidence 44455556666666655554 5678988888899998877642111 0 12343 457777888888
Q ss_pred hhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Q 002099 111 FESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSL 162 (967)
Q Consensus 111 F~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~al 162 (967)
..+=..+++..+.+...|.+.+-+.+++++.+..-++.+.++ |-+|-.+.
T Consensus 290 ~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~--gkdydaav 339 (368)
T PF03616_consen 290 AMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVM--GKDYDAAV 339 (368)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--CCChhHHH
Confidence 888889999999999999998777788777766555555444 44554443
No 91
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=84.34 E-value=24 Score=35.52 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhH-------
Q 002099 35 DAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLP------- 107 (967)
Q Consensus 35 ~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~------- 107 (967)
..+.+++++..++.+...-+.+=|++....-+++|+++....-.... +. +.+ -|..+|..+++.
T Consensus 16 ~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~~Tg--G~--kGl-----aDi~lfsGiglmGGaMlRD 86 (254)
T TIGR00808 16 TAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGVYTG--GE--KGL-----ADIAIFGGFGLMGGAMLRD 86 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHcccccC--Cc--ccc-----chhhhhcchhhhhhHHHHH
Confidence 34445555566665555555566899999999999999876421111 11 011 122233333221
Q ss_pred HHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002099 108 ALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKL 150 (967)
Q Consensus 108 ~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~ 150 (967)
+-+-..+++.|.++.||....-.+--+.|+++++++...+.+.
T Consensus 87 fAIvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~a 129 (254)
T TIGR00808 87 LAIVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWA 129 (254)
T ss_pred HHHHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345678999999999998877777778888888775444443
No 92
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=84.32 E-value=22 Score=39.51 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcHHH--HHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhh
Q 002099 38 IFVGISLVLGIACRHLLRGTRVPYTV--ALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (967)
Q Consensus 38 l~~~~~l~~~~~~~~l~~r~~lP~~v--~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~ 115 (967)
..+.+++.++.+...+++++|+|..- +=++++.++.... .. ...-|+.+.......+=...|.
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~--~~-------------~~~~P~~l~~~aqv~iG~~iG~ 219 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG--GP-------------SFSLPPWLVNAAQVLIGASIGS 219 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--CC-------------CCCCCHHHHHHHHHHHHHHHHc
Confidence 34455566777888888989998532 2223333222221 00 0123677788888888888999
Q ss_pred cCCHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 002099 116 AMEVHQIKRCLVQMI--LLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163 (967)
Q Consensus 116 ~~~~~~l~~~~~~i~--~la~~gv~i~~~~~~~~~~~~~~~~~~~~~all 163 (967)
+++...+|+..+... .+.....+..+++.++.++.+. ++++..+++
T Consensus 220 ~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~--~~~~~t~~L 267 (318)
T PF05145_consen 220 RFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLT--GIDFLTALL 267 (318)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 999887776444332 2223333344445566666665 778877665
No 93
>COG2985 Predicted permease [General function prediction only]
Probab=84.09 E-value=6 Score=45.05 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=64.7
Q ss_pred HHHHHhHHHhhhhhhcCCHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHH
Q 002099 101 LLAVFLPALLFESSFAMEVH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (967)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~---~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~ 177 (967)
-+++++.+.+|..|++--.. .+|+.+++-..++++- +++....+++.+.++..+.+....++-||.-|...-+++.
T Consensus 60 ~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~ 138 (544)
T COG2985 60 HFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQ 138 (544)
T ss_pred hhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHH
Confidence 34788999999999987654 6688888888888765 4555555666666663333456778888888888888888
Q ss_pred HHHhhcCCCcc
Q 002099 178 ALLKELGASKK 188 (967)
Q Consensus 178 ~il~~l~~~~~ 188 (967)
-++++++.+..
T Consensus 139 ~~L~~lg~~~~ 149 (544)
T COG2985 139 DILRELGAPSQ 149 (544)
T ss_pred HHHHhhccchh
Confidence 99999987754
No 94
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=83.95 E-value=12 Score=45.95 Aligned_cols=33 Identities=21% Similarity=0.075 Sum_probs=24.9
Q ss_pred ccccccccCCeEEEeecCceeEEEeeeeecccc
Q 002099 888 RSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGL 920 (967)
Q Consensus 888 ~~~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~ 920 (967)
..|.--|+-|+...++++++.++-+=++.+++.
T Consensus 709 ~~ky~aykv~~~liie~~~gev~rry~in~h~~ 741 (810)
T TIGR00844 709 KSKYYAYKVGNDLIIEDESGEVFRRYRISPHGG 741 (810)
T ss_pred ccceeEEEeCCEEEEecCCCceeeeeeccCCCC
Confidence 356667888888889988888887777777654
No 95
>PRK04972 putative transporter; Provisional
Probab=83.82 E-value=10 Score=45.64 Aligned_cols=132 Identities=13% Similarity=0.107 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhhcC-----CCCcHHHHHHHHHHHHHhhhccccccccccccccccccccCh---hHHHHHHhHH
Q 002099 37 VIFVGISLVLGIACRHLLRG-----TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPA 108 (967)
Q Consensus 37 ll~~~~~l~~~~~~~~l~~r-----~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~i~l~~ 108 (967)
++.+++.+++|.+++.+.=+ +++-..-+-+++|+++|.+.. .++.. ..+++ ..+-+++|.+
T Consensus 383 ~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~--------~~~~~---~~~p~~a~~~l~~~GL~l 451 (558)
T PRK04972 383 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRA--------NHPTF---GYIPQGALNMVKEFGLMV 451 (558)
T ss_pred HHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccc--------cCCCc---eeeCHHHHHHHHHHhHHH
Confidence 44555556666666655422 223334678889999987532 11111 12222 3677889998
Q ss_pred HhhhhhhcCCH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-ccccHHHHHHHHhhc
Q 002099 109 LLFESSFAMEV---HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (967)
Q Consensus 109 llF~~g~~~~~---~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgail-s~Tdp~av~~il~~l 183 (967)
.+...|++--. +.+++.+++.+..++..++++.+++.++.++++ ++++. .++|++. +-|+|++..+..+..
T Consensus 452 Fla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~--k~~~~--~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 452 FMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL--RMNRA--LLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHH--HHHHHHhCCCCCcHHHHHHHhhc
Confidence 88888887654 355667788888888888888877777777776 55654 5556554 347777776666544
No 96
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=83.18 E-value=20 Score=39.76 Aligned_cols=109 Identities=17% Similarity=0.084 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCH
Q 002099 40 VGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEV 119 (967)
Q Consensus 40 ~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~ 119 (967)
+.+....+.+.+.+.+++|+|... ++..++++...... + +-. -.-|..+..+.-.++--..|.++|.
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~--ll~~l~l~a~v~~~----~--~~~-----~~lP~wl~~va~~~iG~~IG~~f~~ 256 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPT--LLGPLLLGAIVHFG----G--GIT-----IQLPAWLLAVAQALIGALIGSRFDR 256 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHhhcc----c--cee-----eeCCHHHHHHHHHHHHHHHcccccH
Confidence 445555666777777888999654 34455555432110 0 001 1236677777777777888999888
Q ss_pred HHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 002099 120 HQIKRCLVQ--MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163 (967)
Q Consensus 120 ~~l~~~~~~--i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~all 163 (967)
..++...+. ...+...+.++-.+.+++...++. +.||.++++
T Consensus 257 ~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~--~i~~~ta~L 300 (352)
T COG3180 257 SILREAKRLLPAILVSIIALMAIAAGMAGLLSWLT--GIDLNTAYL 300 (352)
T ss_pred HHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 877654432 233344444444455566666655 788877654
No 97
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=82.66 E-value=53 Score=35.86 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=42.2
Q ss_pred HhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHhhcccccccHHHHHHHHhhc
Q 002099 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YDWSWKTSLLLGGLLSATDPVAVVALLKEL 183 (967)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~-~~~~~~~alllgails~Tdp~av~~il~~l 183 (967)
.+.+.+|..|-++|++.-.+..++-..+-..=+++..++ ++....+++ .|+--...+.+=+.++.|....-.++..+.
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~-g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~y 128 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVI-GLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEF 128 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHH-HHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHc
Confidence 456678999999999887777666655544444444443 444444443 122112333333444444444444444444
Q ss_pred C
Q 002099 184 G 184 (967)
Q Consensus 184 ~ 184 (967)
|
T Consensus 129 G 129 (312)
T PRK12460 129 G 129 (312)
T ss_pred C
Confidence 3
No 98
>COG2855 Predicted membrane protein [Function unknown]
Probab=82.02 E-value=20 Score=39.34 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=73.0
Q ss_pred hhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHH
Q 002099 278 EGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLIL 357 (967)
Q Consensus 278 e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~ 357 (967)
+..|.|..+=+.+.|+.++++.+.. ++ ...=.+.-+..+--+=-++.|..++...+.+. + +. .+.
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~--~~----~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~------G--~~-~v~ 97 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIP--AQ----TSAGITFSSKKLLRLGIVLLGFRLTLSDIADV------G--GS-GVL 97 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccch--hh----hccchhhhHHHHHHHHHHHHcceeeHHHHHHc------C--cc-HHH
Confidence 4567778888999999998643321 11 11111111111222223677888766544210 1 11 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhc-cchhhHHHHHh-hhhcccCCCCcccccccccchhhhhhhhh
Q 002099 358 LYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLS-LSVKRSSGGSSLITSETGTLFVFFTGGIV 435 (967)
Q Consensus 358 ~~~~~~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~-g~RG~v~lala-l~v~~~~~~~~~~~~~~~~~i~~~~~~vv 435 (967)
+.+.++..=++. ..++.+ ..|++++.+..++-| +.=|+-+.+.. ..++. +.++.-..++ .++
T Consensus 98 ~~~~~l~~t~~~----~~~lg~-~lgld~~~a~Lia~GssICGasAiaA~~pvika----------~~~eva~aIa-~V~ 161 (334)
T COG2855 98 IIAITLSSTFLF----AYFLGK-LLGLDKKLALLIAAGSSICGASAIAATAPVIKA----------EEEEVAVAIA-VVV 161 (334)
T ss_pred HHHHHHHHHHHH----HHHHHH-HhCCCHHHHHHHHccchhhHHHHHHHhCCcCCC----------Cccccceehh-hHH
Confidence 222222222222 224555 368999999999986 66777665432 22221 1122222222 233
Q ss_pred hhhhhccccchHHHHhhcCCCC
Q 002099 436 FLTLIVNGSTTQYILHLLDMDK 457 (967)
Q Consensus 436 l~Tl~i~g~t~~~l~~~l~l~~ 457 (967)
++.++ .-...|++-.+++++.
T Consensus 162 lfgti-a~llyP~l~~~l~l~~ 182 (334)
T COG2855 162 LFGTL-AMLLYPLLYPLLGLSP 182 (334)
T ss_pred HHHHH-HHHHHHHHHHHhCCCc
Confidence 33332 2355888888988654
No 99
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=81.89 E-value=45 Score=34.49 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=28.2
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (967)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~ 151 (967)
-+-=.++.+||+|++++.-.+.|.++........++++
T Consensus 78 PLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~ 115 (230)
T COG1346 78 PLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF 115 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34447889999999999888888887776655555544
No 100
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=79.42 E-value=19 Score=35.19 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHH---HHhh-hhHHHHHHHH
Q 002099 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI---KRCL-VQMILLAGPG 136 (967)
Q Consensus 61 ~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l---~~~~-~~i~~la~~g 136 (967)
...+.+++|+++|.+... +.+.-.+ ..--+..+-+++|.+.++..|++.-..-+ ++.. ...+.++...
T Consensus 23 ~~~G~L~vgL~~G~~~~~-----~p~~~~~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGAT-----GPLTWYI---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ccHHHHHHHHHHHhcccc-----CCcceec---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 367888999999986311 0100000 01123567789999999999998776544 4433 2333344444
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-ccccHHHHHHHHhhc
Q 002099 137 VMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (967)
Q Consensus 137 v~i~~~~~~~~~~~~~~~~~~~~~alllgail-s~Tdp~av~~il~~l 183 (967)
++++.+++.+..++++ ++++. ...|++- +-|+|++..+..+..
T Consensus 95 ~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 95 TVVPTLLVAVALIKLL--RINYA--LTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHh--CCCHH--HHHHHHhccccChHHHHHHHHHh
Confidence 5555555566666665 45542 4444443 336666665555543
No 101
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=78.42 E-value=17 Score=39.68 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHHhhhccccccccccccccccccccCh--hHHHHHHhHHHhhhhhhc--CCHHHHHHhhhhHHHHHHH
Q 002099 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP--DLLLAVFLPALLFESSFA--MEVHQIKRCLVQMILLAGP 135 (967)
Q Consensus 60 P~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~i~l~~llF~~g~~--~~~~~l~~~~~~i~~la~~ 135 (967)
...+.+++.|+++|...- . .+. ..+.| +-++.-.|++++.+.|+. -.++++|+..+..+..++.
T Consensus 177 ~~sv~LLlGgliIG~~~g-~-~g~----------~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~ 244 (327)
T PF05982_consen 177 NKSVVLLLGGLIIGFLAG-P-EGV----------ESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGIL 244 (327)
T ss_pred CchHHHHHHHHHHhheeC-c-cch----------hhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHH
Confidence 346788889999997641 1 101 11222 224455678888888875 3455677777776666665
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCc
Q 002099 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASK 187 (967)
Q Consensus 136 gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~ 187 (967)
.=++...+ |..+.++. |++...+.+++.+.++-|-.++-+.+|- .+|+
T Consensus 245 ~Pli~a~i-g~~lg~~~--gls~Gg~~llavLaASASYIAvPAAmR~-AiPe 292 (327)
T PF05982_consen 245 MPLINALI-GIGLGWLL--GLSPGGAVLLAVLAASASYIAVPAAMRA-AIPE 292 (327)
T ss_pred HHHHHHHH-HHHHHHHh--CCCCccHHHHHHHHhhHhhhhhhHHHHh-hCcc
Confidence 54554444 33344444 8899999999998888888887777763 4444
No 102
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=78.32 E-value=22 Score=39.27 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=64.9
Q ss_pred hHHHHHHhHHHhhhhhhc-CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccc---ccHH
Q 002099 99 DLLLAVFLPALLFESSFA-MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA---TDPV 174 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~-~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~---Tdp~ 174 (967)
++|..-+.=++++..|+. +|++++-+.+....++-+..+++.....++...+++. -+|...|+.-|++.+. |.-+
T Consensus 322 ~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~-~YPVEaAI~aglC~a~~GGtGDv 400 (438)
T COG3493 322 QFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMG-FYPVEAAITAGLCMANMGGTGDV 400 (438)
T ss_pred HHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHhHHhcCCCCCCch
Confidence 456666788999999998 9999998877666666777888888888888777764 3577777777777664 7777
Q ss_pred HHHHHHhhcC
Q 002099 175 AVVALLKELG 184 (967)
Q Consensus 175 av~~il~~l~ 184 (967)
+|.+.-++++
T Consensus 401 aVLsAa~RM~ 410 (438)
T COG3493 401 AVLSAADRME 410 (438)
T ss_pred HHhhhcchhc
Confidence 7777777665
No 103
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=75.84 E-value=1.3e+02 Score=32.89 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=45.6
Q ss_pred hHHHhhhhhhcCCHHHHHHhhhh--HHHHHHH-HH-HHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHH-H
Q 002099 106 LPALLFESSFAMEVHQIKRCLVQ--MILLAGP-GV-MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVAL-L 180 (967)
Q Consensus 106 l~~llF~~g~~~~~~~l~~~~~~--i~~la~~-gv-~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~i-l 180 (967)
+..++|..|..++.+++++..++ ....++. .. +.+.+. +.+..++ +.+ ..+..|.++.+.-|.++.+. +
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla--~~l~~~~--~l~--~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG--FLLAKVF--KLP--PELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH--HHHHHHh--CCC--HHHHHHHHheeeCCCchHHHHH
Confidence 88889999999999999987762 2222222 22 233332 3333333 333 34445555544444444432 2
Q ss_pred -hhcCCCcchhhhhhhhh
Q 002099 181 -KELGASKKLNTIIEGES 197 (967)
Q Consensus 181 -~~l~~~~~l~~li~ges 197 (967)
+..|-+..+...+..-|
T Consensus 88 t~~~~gn~~la~~~~~~s 105 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCS 105 (286)
T ss_pred HHHhCCCHhhhhHHHHHH
Confidence 33455555555444433
No 104
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=72.93 E-value=57 Score=35.51 Aligned_cols=156 Identities=12% Similarity=0.185 Sum_probs=94.2
Q ss_pred HhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-----cHHHHHHhhcccccccHHHHHH
Q 002099 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY-DW-----SWKTSLLLGGLLSATDPVAVVA 178 (967)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~-~~-----~~~~alllgails~Tdp~av~~ 178 (967)
.+.+++|..|-++|++...+..++-..+-+.=+++..++ |+....+++. |. =-..++.+=+.++.+.+..-.+
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~l-gl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALL-GLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHH-HHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHH
Confidence 466779999999999999998888887776666666554 6666556542 21 1246777778889999999999
Q ss_pred HHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002099 179 LLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDT 258 (967)
Q Consensus 179 il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~ 258 (967)
+..+.|-+.+.+-. +-.-+||+=.+.+. +++.....+++|...+..++ -+++|+++|-+-. -+|+.+..
T Consensus 129 L~~~yGd~~D~gA~--~i~sl~~GPf~tMl--~LG~sG~a~ip~~~lv~~ll-----P~iiG~iLGNLD~-~~r~fl~~- 197 (314)
T PF03812_consen 129 LMGQYGDEEDVGAF--SILSLNDGPFFTML--ALGASGLANIPWMSLVAALL-----PIIIGMILGNLDP-DFRKFLAP- 197 (314)
T ss_pred HHHHhCCHHHhHHH--HHHHhhhhHHHHHH--HHhhccccCCCHHHHHHHHH-----HHHHHHHHhcCCH-HHHHHHhc-
Confidence 99999865554322 23345665443333 33433334566655544332 2345666665422 12222211
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 002099 259 VIEIALTLAVSYIAFFTA 276 (967)
Q Consensus 259 ~~~~~l~l~~~~~~~~~a 276 (967)
...+.++|+.|.++
T Consensus 198 ----~~~~lIPF~~f~lG 211 (314)
T PF03812_consen 198 ----GVPILIPFFGFALG 211 (314)
T ss_pred ----CCCeeeehhhhhhc
Confidence 22234566666555
No 105
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=70.08 E-value=31 Score=41.55 Aligned_cols=109 Identities=21% Similarity=0.179 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHhhhccccccccccccccccccccCh---hHHHHHHhHHHhhhhhhcCCHH---HHHHhhhhHHHHH
Q 002099 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPALLFESSFAMEVH---QIKRCLVQMILLA 133 (967)
Q Consensus 60 P~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~i~l~~llF~~g~~~~~~---~l~~~~~~i~~la 133 (967)
-...+.+++|+++|.+... ++. . ..+++ ..+-+++|.+.++..|++--.. .+++.+.+.+.++
T Consensus 416 g~~~g~l~~gl~~g~~~~~--------~~~--~-~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSK--------HPT--F-GNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred hhhHHHHHHHHHHHHhccc--------CCc--c-eecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 3456778888888875311 100 0 12333 2577889999999999987664 4566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-ccccHHHHHHHHhhc
Q 002099 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (967)
Q Consensus 134 ~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgail-s~Tdp~av~~il~~l 183 (967)
+.-++++.+++.+..++++ ++++. .+.|++. +-|+|++..+..+..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVL--KYDPA--LLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCHH--HHHHHhhccCCCcHHHHHHHHhc
Confidence 7777777776666665665 45543 4455443 346777766665544
No 106
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=68.78 E-value=3 Score=47.61 Aligned_cols=110 Identities=13% Similarity=0.223 Sum_probs=11.3
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHH-HHHhHHHhhhhhhcCCHHHH---HHhh
Q 002099 51 RHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLL-AVFLPALLFESSFAMEVHQI---KRCL 126 (967)
Q Consensus 51 ~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~l~~llF~~g~~~~~~~l---~~~~ 126 (967)
..+++.++.++.++-+++|++++..... .... ..-+.+. .++.|+.....|.++|++.+ ...+
T Consensus 226 ~~~a~~~g~s~~l~af~~Gl~~~~~~~~-----~~~~--------~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~ 292 (380)
T PF00999_consen 226 YGLAEILGLSGILGAFIAGLILSNSPFA-----ERLE--------EKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVI 292 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeeeeehcccccccc-----chhh--------hcccchhhHHHhhHHhhhhcccccccccccchhhh
Confidence 3445567888888888899888832211 0011 1122233 78888888999999999888 4444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHH
Q 002099 127 VQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (967)
Q Consensus 127 ~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av 176 (967)
...+.+.+...+.-.+.+ +...... +++|..++.+|....+-..+..
T Consensus 293 ~~~~~~~~~~~~~k~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~~~l 339 (380)
T PF00999_consen 293 ILVLLLLIAILLGKFIGV-YLASRLF--GIPWKEALFIGLGMLPRGEVSL 339 (380)
T ss_dssp ---------------------------------HHHHTTTTSS--HHHHH
T ss_pred hhHHHHHHHHHHhhhcee-ehhhhhc--ccccchhHHHHHhhcCccHHHH
Confidence 444444433333333332 2222222 7899999999988886554443
No 107
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=66.45 E-value=45 Score=38.99 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhh
Q 002099 56 GTRVPYTVALLIIGIALGSLE 76 (967)
Q Consensus 56 r~~lP~~v~lil~Gi~lG~~~ 76 (967)
|.|+|..+...+.|++-|...
T Consensus 282 ~~R~~wL~v~~~~~~~t~~ii 302 (449)
T TIGR00400 282 KNRIIWLLVLLVSSTFTATII 302 (449)
T ss_pred HhccchHHHHHHHHHHHHHHH
Confidence 357888888888888887653
No 108
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=65.99 E-value=50 Score=31.70 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=33.3
Q ss_pred hhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 002099 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (967)
Q Consensus 113 ~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~ 152 (967)
.|.=..++.++.++++++..-+.+++++.+++|+...++.
T Consensus 78 VGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 78 ISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778899999999999999999999888888776654
No 109
>PRK03818 putative transporter; Validated
Probab=65.37 E-value=54 Score=39.44 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-------CCcHHHHHHHHHHHHHhhhccccccccccccccccccccC---hhHHHHHHh
Q 002099 37 VIFVGISLVLGIACRHLLRGT-------RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASID---PDLLLAVFL 106 (967)
Q Consensus 37 ll~~~~~l~~~~~~~~l~~r~-------~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~i~l 106 (967)
...+++.++++.+++.+.=++ ++-..-+-+++|+++|.+....+ .. ..++ ...+.+++|
T Consensus 371 ~~~l~l~I~lg~llG~i~~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~~~--------~~---~~~p~~a~~~l~~~GL 439 (552)
T PRK03818 371 MLPVFIGIGLGVLLGSIPFFIPGFPAALKLGLAGGPLIVALILGRIGSIGK--------LY---WFMPPSANLALRELGI 439 (552)
T ss_pred hHHHHHHHHHHHhhceeeEecCCCccceeeecchHHHHHHHHHHhccCCCC--------ce---eecCHHHHHHHHHHhH
Confidence 344555566666666653221 12224568889999987642110 00 0122 245777899
Q ss_pred HHHhhhhhhcCCHHHHH---H-hhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-ccccHHHHHHHHh
Q 002099 107 PALLFESSFAMEVHQIK---R-CLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLK 181 (967)
Q Consensus 107 ~~llF~~g~~~~~~~l~---~-~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgail-s~Tdp~av~~il~ 181 (967)
.+.++..|++--..-+. + .+...+.+++..++++.++..++.++++ ++++. .+.|++. +-|+|++..+..+
T Consensus 440 ~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 440 VLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLA--KMNYL--TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred HHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHH--HHHHHHhccCCCcHHHHHHhc
Confidence 99999999987665443 2 3556666666666666666556656666 55544 4555543 3466666655443
No 110
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=63.79 E-value=2.6e+02 Score=31.70 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 002099 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 336 (967)
Q Consensus 282 ~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~ 336 (967)
.++.+-+.++|++++-.+... +-.....+....+.++....++-.+.+|..+..
T Consensus 243 ~nP~~~a~~lgli~~~~~~~~-~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~ 296 (385)
T PF03547_consen 243 KNPPLIAIILGLIIGLIPPLR-PLFFPSFITDSLSYLGAAAVPLALFVLGASLAR 296 (385)
T ss_pred hCcHHHHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 367777788888887643211 001126778889999999999999999998854
No 111
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=63.47 E-value=2e+02 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=26.0
Q ss_pred hcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (967)
Q Consensus 115 ~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~ 151 (967)
+--+++.+|+++++++.--+.|.+++.+......+++
T Consensus 82 LY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~l 118 (232)
T PRK04288 82 LYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLI 118 (232)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346889999999999877777777766544444433
No 112
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=62.03 E-value=69 Score=32.58 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=19.3
Q ss_pred ccccccHHHHHHHHhhcCCCcchhh
Q 002099 167 LLSATDPVAVVALLKELGASKKLNT 191 (967)
Q Consensus 167 ils~Tdp~av~~il~~l~~~~~l~~ 191 (967)
....|+|.-....++++|+|+++..
T Consensus 110 ~~~TT~~~~l~~~l~~l~~P~~~~~ 134 (198)
T TIGR02454 110 LALTTPFPELLSALRRLGVPPLLVE 134 (198)
T ss_pred HHHcCCHHHHHHHHHHcCCCHHHHH
Confidence 3456888888888999999977643
No 113
>COG3329 Predicted permease [General function prediction only]
Probab=61.16 E-value=2.5e+02 Score=30.52 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHH----HhHHHhhhhhhcCCHHHHHHhhhhHHHHHHH
Q 002099 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAV----FLPALLFESSFAMEVHQIKRCLVQMILLAGP 135 (967)
Q Consensus 60 P~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i----~l~~llF~~g~~~~~~~l~~~~~~i~~la~~ 135 (967)
.+++..++.|+++..+...+ .-|+.+... .+.-+=|.+|.++..+ +....+.-+..
T Consensus 17 sP~llFf~~Gmlia~~ksdl----------------~iP~~i~~~lslyLL~aIG~kGGveir~s----nl~a~v~~~~~ 76 (372)
T COG3329 17 SPTLLFFILGMLIAAFKSDL----------------EIPEAIYQALSLYLLLAIGFKGGVEIRNS----NLTAMVLPVAL 76 (372)
T ss_pred cchHHHHHHHHHHHHHhccc----------------cCchHHHHHHHHHHHHHHhcccceeeecC----CcchhHHHHHH
Confidence 44678888899887653111 124434443 4444455555555444 44444444445
Q ss_pred HHHHHHHHHHHHHHHH--cCCCCcHHHHHHhhccccccc---HHHHHHHHhhcCC
Q 002099 136 GVMISTFFLGAALKLT--FPYDWSWKTSLLLGGLLSATD---PVAVVALLKELGA 185 (967)
Q Consensus 136 gv~i~~~~~~~~~~~~--~~~~~~~~~alllgails~Td---p~av~~il~~l~~ 185 (967)
++.+.++++..+-+.+ +| +.+...+...|+.-.+++ ..+.++.+++.|.
T Consensus 77 ~~aL~~li~~ia~f~l~kl~-~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~gi 130 (372)
T COG3329 77 GVALGFLIVFIAYFLLRKLP-KVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGI 130 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcc-ccchHHHHHHHhhccchhHHHHHHHHHHHHHcCc
Confidence 5555544432222222 23 566666666665544444 3444567888874
No 114
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=59.76 E-value=69 Score=38.34 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccchHhHHHHHHHHHHHH
Q 002099 679 TRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDL 719 (967)
Q Consensus 679 t~~~~~~ll~~~~~~~~~l~~~G~l~~~e~~~l~~~i~~~l 719 (967)
.+++.+.+++.+|+.+.++.++|.+|++...++.+++|-+-
T Consensus 480 ~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~e 520 (525)
T TIGR00831 480 RRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLKE 520 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHH
Confidence 34678899999999999999999999998887777776543
No 115
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=58.03 E-value=41 Score=42.09 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=48.2
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHH
Q 002099 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (967)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~ 177 (967)
....+++|+-...+|++.|...+.+ +...........+..++.+..... .. ++||..++.+|.+++.-.-+...
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl-~~--k~p~~~~l~l~~lm~~kgl~el~ 383 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSL-YC--KLPLRDSLALGLLMSTKGLVELI 383 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCchhHHHHHHHHHHhhhHHHHH
Confidence 4557899999999999999999998 333333322223333333222233 33 78999999999988876554443
No 116
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=57.83 E-value=13 Score=38.17 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=76.6
Q ss_pred CCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHH
Q 002099 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (967)
Q Consensus 57 ~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~g 136 (967)
.++|+..+.+++|.++-...+... ... ..+-......+.+-++.-..|++++.|.+++.......+++..
T Consensus 125 i~l~~aigel~a~fLiiNI~~~~~--------~~~--~~iv~s~l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~ 194 (252)
T KOG3826|consen 125 IGLPTAIGELLAGFLIINISFVNG--------AVC--APIVVSPLRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLP 194 (252)
T ss_pred ccccchHHHHHHHHHheecchhhh--------cee--eeeeehhhhhccchHHHHHhhhcccccchhhhhHHHhhhhhhh
Confidence 456678888888866544332100 000 1112233455667788889999999999999888888877776
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHH
Q 002099 137 VMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180 (967)
Q Consensus 137 v~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il 180 (967)
-.+.+..-+...++.+ ..||..+++.|.+..+-.+..+.+-.
T Consensus 195 ~~~~a~a~~~~S~~~l--~~~ii~~~l~g~v~~~i~~~~~r~~~ 236 (252)
T KOG3826|consen 195 SIIEASAPAVTSHFLL--AGPIIWAFLLGIVIGSILWRFPRPDY 236 (252)
T ss_pred hhhccccHHHHHHHHh--ccchHHHhccccceeeeecCCccccc
Confidence 6666666555566665 68999999999999887776655433
No 117
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=56.34 E-value=35 Score=27.86 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=40.9
Q ss_pred EEecCCCeeecCCCCCC-eEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 762 IMKLSGVTLYREGSKPS-GIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 762 ~~~~~ge~I~~eGe~~~-~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
..++||+..-..-.+.. .+++|++|.+.+... |+. ..+.+||.+=. =.+.++.......+++.++.|
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~i---~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD---GER---VELKPGDAIYI---PPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEET---TEE---EEEETTEEEEE---ETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEc---cEE---eEccCCEEEEE---CCCCeEEEEECCCCCEEEEEE
Confidence 45677776655555555 899999999999833 222 36788876411 134444444444555665543
No 118
>PRK01658 holin-like protein; Validated
Probab=56.22 E-value=99 Score=28.93 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=36.1
Q ss_pred HHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 002099 103 AVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (967)
Q Consensus 103 ~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~ 152 (967)
.+|+|. ..|.=-.++.+++++.+++...+.+++++.+++|+...++.
T Consensus 68 llFVPa---~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 68 LFFIPS---AVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred HHHHHh---hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345553 34555677899999999999999999999998888776643
No 119
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=55.97 E-value=0.89 Score=38.44 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=32.0
Q ss_pred ccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 921 QEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 921 ~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
+++ +++.+|++++++|++++.++++|++..+.+++.+
T Consensus 31 ~~~-iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~i~I 67 (76)
T PF13545_consen 31 QEE-IADMLGVSRETVSRILKRLKDEGIIEVKRGKIII 67 (76)
T ss_dssp HHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHH-HHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 556 5889999999999999999999999988776544
No 120
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=53.07 E-value=4.1e+02 Score=30.54 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH---HHHHhhhcccccccccccc----ccccccccChhHHHHHH
Q 002099 33 PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIG---IALGSLEYGTSHQLGKIGD----GIRLWASIDPDLLLAVF 105 (967)
Q Consensus 33 ~~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~G---i~lG~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~i~ 105 (967)
+.+.+--+++..++|.+++++-+|+.+=.. ++-.| .+++|...... +.+.+ .+.. -++..-|++++
T Consensus 27 p~~m~g~~a~~~v~G~~l~~IG~riPi~k~--yiGGg~il~~f~ps~Lv~~---~~ip~~~~~~v~~--fm~~~~Fl~ff 99 (414)
T PF03390_consen 27 PTDMIGGFAVMMVLGFLLGEIGDRIPILKD--YIGGGAILCIFVPSALVYF---GLIPESVVEAVTN--FMKGSNFLYFF 99 (414)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhChhhhc--cCChHHHHHHHHHHHHHHc---CCCCHHHHHHHHH--HhccCChHHHH
Confidence 345666677788888888888776543221 12222 12233322111 11111 1111 11233588899
Q ss_pred hHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHh
Q 002099 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLL 164 (967)
Q Consensus 106 l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alll 164 (967)
+..++--+=+.+|.+.+.|...+.+...+.+++...++.+.... ++ |.++..+++.
T Consensus 100 Ia~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~-l~--G~~~~~~i~~ 155 (414)
T PF03390_consen 100 IAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGM-LF--GYSFKDAIFY 155 (414)
T ss_pred HHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--CCCHHHHHHH
Confidence 99999999999999999999988888777777777666554444 44 7777766654
No 121
>PRK09903 putative transporter YfdV; Provisional
Probab=52.35 E-value=3.6e+02 Score=29.73 Aligned_cols=138 Identities=7% Similarity=-0.029 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCcchHHHHHHHHHHH
Q 002099 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFV 362 (967)
Q Consensus 283 Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 362 (967)
++++-+.++|++++-.+- .. .+.+.+..+.++....|+--+.+|+.+...... .++. .....+.-
T Consensus 173 nP~iia~~~gl~~~l~~i-~l----P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---------~~~~-~~~~~~~K 237 (314)
T PRK09903 173 EPVVWAPVLATILVLVGV-KI----PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---------FSAE-IAYNTFLK 237 (314)
T ss_pred chHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------ccHH-HHHHHHHH
Confidence 455556666666654221 12 345677788888899999999999998653211 1121 11111112
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccCCCCcccccccccchhhhhhhhhhhhhhcc
Q 002099 363 QVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVN 442 (967)
Q Consensus 363 ~v~R~l~v~~~~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i~ 442 (967)
++.-++.++... ...+....++...++..+.|-+..+..+|-....+ . ..++..+.+|+++.
T Consensus 238 li~~P~i~~~~~---~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~-----------~----~~aa~~v~~sTlls 299 (314)
T PRK09903 238 LILMPLALLLVG---MACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVY-----------T----RTGTASLAVSVLGF 299 (314)
T ss_pred HHHHHHHHHHHH---HHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHccc-----------H----HHHHHHHHHHHHHH
Confidence 222233332211 12233344566666666778888888887653211 0 13444677788887
Q ss_pred ccchHHHHhhc
Q 002099 443 GSTTQYILHLL 453 (967)
Q Consensus 443 g~t~~~l~~~l 453 (967)
-.|+|.++..+
T Consensus 300 ~iTlpl~~~l~ 310 (314)
T PRK09903 300 VVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHH
Confidence 78888776544
No 122
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=49.66 E-value=1.8e+02 Score=32.11 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHH
Q 002099 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (967)
Q Consensus 57 ~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~g 136 (967)
++-|... -.++|+++.......+ .+....-+.+.....|.-+|..|..++.+..++..+.+....+.=
T Consensus 180 ~~nP~ii-a~i~Gl~~~~~~i~lP-----------~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~k 247 (321)
T TIGR00946 180 IKFPPLW-APLLSVILSLVGFKMP-----------GLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVR 247 (321)
T ss_pred HhCCChH-HHHHHHHHHHHhhcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHH
Confidence 3556544 4566777766532111 111222366778889999999999999988887766665544444
Q ss_pred HH
Q 002099 137 VM 138 (967)
Q Consensus 137 v~ 138 (967)
.+
T Consensus 248 li 249 (321)
T TIGR00946 248 FL 249 (321)
T ss_pred HH
Confidence 43
No 123
>PRK01821 hypothetical protein; Provisional
Probab=48.26 E-value=1.5e+02 Score=28.21 Aligned_cols=47 Identities=6% Similarity=0.137 Sum_probs=35.3
Q ss_pred HHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 002099 103 AVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (967)
Q Consensus 103 ~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~ 152 (967)
.+|+|. ..|.=..++.+++++.+++..-+.+++++.+++|+...++.
T Consensus 73 LfFVPa---~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 73 LLFVPI---GVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344553 34555667889999999999888899998888888776653
No 124
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=47.54 E-value=5e+02 Score=29.96 Aligned_cols=91 Identities=10% Similarity=0.179 Sum_probs=44.0
Q ss_pred CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccc-HHHHHHHHhhcCCCcchhh-hhh
Q 002099 117 MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATD-PVAVVALLKELGASKKLNT-IIE 194 (967)
Q Consensus 117 ~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Td-p~av~~il~~l~~~~~l~~-li~ 194 (967)
-|.+.+.|.++..+........+..++ |+.+..++..|.+.... ....-++.. +......+.+. +|+.+-. +.+
T Consensus 66 ~~~k~~gr~g~ktl~yf~~tt~~A~~i-Gl~~~~~~~Pg~g~~~~--~~~~~~~~~~~~~~~~~l~~i-iP~ni~~a~a~ 141 (415)
T COG1301 66 GDLKKLGRLGGKTLIYFLVTTTLAIAI-GLVVANVLQPGAGINID--PATLDTGAESEVSILDFLLDI-IPTNIFGALAE 141 (415)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCcC--ccccCCcccccchHHHHHHhh-cCCChHhHhcC
Confidence 356777777777776655544444433 44443333213211000 000000000 11133444433 4555443 333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHc
Q 002099 195 GESLMNDGTAIVVYQLFFQMVL 216 (967)
Q Consensus 195 gesl~nD~~aivlf~~~~~~~~ 216 (967)
||...+++|.++++.+.
T Consensus 142 -----g~vLqil~fail~G~al 158 (415)
T COG1301 142 -----GNVLQILFFAILFGLAL 158 (415)
T ss_pred -----CChHHHHHHHHHHHHHH
Confidence 38999999999888764
No 125
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=47.20 E-value=56 Score=31.53 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=49.0
Q ss_pred cEEEEecCCCeeecCCC-CCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 759 TKEIMKLSGVTLYREGS-KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe-~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
+....+.+|...-..-. ..+.+++|++|...+...+.++++.....+.+||.+=.- .+.++.......+++.++++
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip---~g~~H~~~n~~~~~~~~l~~ 108 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP---QGHPHFQVNSGDENLEFVAF 108 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC---CCCEEEEEcCCCCCEEEEEE
Confidence 34556678877654433 256899999999999887765555555678999976432 22232222223455666665
Q ss_pred cHH
Q 002099 838 ESD 840 (967)
Q Consensus 838 ~~~ 840 (967)
+..
T Consensus 109 ~~~ 111 (146)
T smart00835 109 NTN 111 (146)
T ss_pred ecC
Confidence 443
No 126
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=47.01 E-value=1.6e+02 Score=31.75 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=41.2
Q ss_pred HHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 002099 274 FTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGIL 339 (967)
Q Consensus 274 ~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l 339 (967)
.++ +.++.+.+++-+++|+.++...-...++. +..+.++.+.-.++....|+.++.+.+
T Consensus 9 ~l~-~~l~lP~~v~~il~GillGp~~lg~i~~~------~~~~~l~~igl~~llF~~Gl~~d~~~l 67 (273)
T TIGR00932 9 PLS-RRLGIPSVLGYLLAGVLIGPSGLGLISNV------EGVNHLAEFGVILLMFLIGLELDLERL 67 (273)
T ss_pred HHH-HHhCCCHHHHHHHHHHHhCcccccCCCCh------HHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 455 67899999999999999985322112211 234556667777778889999987655
No 127
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=46.79 E-value=3.6e+02 Score=30.51 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhc--CCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhh
Q 002099 38 IFVGISLVLGIACRHLLR--GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (967)
Q Consensus 38 l~~~~~l~~~~~~~~l~~--r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~ 115 (967)
..+++.+.+|.....+.+ ...+|.-++.+++|+++-...-... ... + ..-.-+.+..+.+-+.+=.+=.
T Consensus 225 ~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~--~~~----v---~~~~v~~ig~vsL~lflamALm 295 (404)
T COG0786 225 AIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLK--KYR----V---FRRAVDVIGNVSLSLFLAMALM 295 (404)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhc--ccc----c---cHHHHHHHhhhHHHHHHHHHHH
Confidence 345555666666666665 4668999999999999987531111 000 0 0111244555555555555555
Q ss_pred cCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHh----hccc--ccccHHHHHHHHhhcCCCcch
Q 002099 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLL----GGLL--SATDPVAVVALLKELGASKKL 189 (967)
Q Consensus 116 ~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alll----gail--s~Tdp~av~~il~~l~~~~~l 189 (967)
++.+.++-.-..+.+++-..++++..+..-++.+-++ |-++-.+.+. |--+ +||.-+-..++-++.|.+.+-
T Consensus 296 SlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~m--G~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S~kA 373 (404)
T COG0786 296 SLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLM--GKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPSHKA 373 (404)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh--CcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCCCcee
Confidence 6666777766666666655555555444333333333 5555555542 2223 333333333444555532221
Q ss_pred h--hhhhhhhhHHHHHHH
Q 002099 190 N--TIIEGESLMNDGTAI 205 (967)
Q Consensus 190 ~--~li~gesl~nD~~ai 205 (967)
. .=+.| +.+-|.+..
T Consensus 374 f~ivPiVG-Affid~ina 390 (404)
T COG0786 374 FIVVPIVG-AFFIDIINA 390 (404)
T ss_pred eEEeehHH-HHHHHHHHH
Confidence 1 11234 666666653
No 128
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=46.15 E-value=3.8e+02 Score=30.53 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=42.8
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHh--hcccccccHHHH
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLL--GGLLSATDPVAV 176 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alll--gails~Tdp~av 176 (967)
+.+..+++-+++-..|...|+..+-+ ....++.++..+.+..+++-.... ++ ++++....+- +.|-.||..+++
T Consensus 266 ~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~k-l~--k~~l~~~~vAS~AnIGGpaTA~a~ 341 (378)
T PF05684_consen 266 SELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGK-LF--KIDLFELLVASNANIGGPATAPAV 341 (378)
T ss_pred HHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHH-HH--CCCHHHHHHHhhcccCCcchHHHH
Confidence 34555555555557799999999988 555666666555665555444444 34 5676444332 244445554443
No 129
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=46.00 E-value=1.5e+02 Score=32.33 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=34.8
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 002099 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFL 144 (967)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~ 144 (967)
+.+|++-|.-|-.+|++.+.+..-+-+++++..++++....
T Consensus 201 ~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 201 ILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 46889999999999999999999999999888777765553
No 130
>COG3329 Predicted permease [General function prediction only]
Probab=45.75 E-value=49 Score=35.55 Aligned_cols=143 Identities=24% Similarity=0.343 Sum_probs=73.1
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccCh--hHHHHHHhHHHhhhhhhcCCHHHHHHhhhhH
Q 002099 52 HLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP--DLLLAVFLPALLFESSFAMEVHQIKRCLVQM 129 (967)
Q Consensus 52 ~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i 129 (967)
++.+..-+-+.+.+++.|+++|.+. |.. +.. ...| +-++.-.|.+++...|++- +++++...+..
T Consensus 209 ell~Esflnpal~lllggl~iGlit-Ge~------g~~-----vl~~F~~~lFqGvL~lflL~MGm~A-~rrl~elrk~g 275 (372)
T COG3329 209 ELLQESFLNPALVLLLGGLAIGLIT-GEQ------GES-----VLKPFFDPLFQGVLCLFLLDMGMTA-GRRLKELRKVG 275 (372)
T ss_pred HHHHHHHcCchHHHHHHHHHHhhee-ccC------chh-----hhhhhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcC
Confidence 3444334556677888999999764 110 000 1111 2244455777788888763 33344333333
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHH--cCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhh-----HH
Q 002099 130 ILLAGPGVMISTFF--LGAALKLT--FPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESL-----MN 200 (967)
Q Consensus 130 ~~la~~gv~i~~~~--~~~~~~~~--~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl-----~n 200 (967)
..+-+.|++.+.+. +|+.+.++ .+.|++.....+++.+.++.+-.++-+.++ +++|+--.++=.|.|+ +|
T Consensus 276 ~~~v~fgllaPil~g~ig~~lg~~a~y~tgfs~g~~vllAVlaaSaSyIa~PaalR-~~iPeAnPs~yl~~Slgvtfpfn 354 (372)
T COG3329 276 QGLVLFGLLAPILHGFIGLLLGMIAGYPTGFSDGGVVLLAVLAASASYIAVPAALR-LAIPEANPSLYLGASLGVTFPFN 354 (372)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHHhcchhhccccHHHh-ccCCCCCCcceeehhhcccccee
Confidence 33333444444322 22222222 233555555677776666666555555554 5666655555555553 45
Q ss_pred HHHHHHHH
Q 002099 201 DGTAIVVY 208 (967)
Q Consensus 201 D~~aivlf 208 (967)
=.++|.+|
T Consensus 355 i~igIPLy 362 (372)
T COG3329 355 ITIGIPLY 362 (372)
T ss_pred eeechHHH
Confidence 55555555
No 131
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=45.59 E-value=3.7e+02 Score=27.92 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=25.0
Q ss_pred CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (967)
Q Consensus 118 ~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~ 151 (967)
+++.+|+++++++.--+.|.+++.+...+..+++
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~l 102 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLL 102 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999998887888777776655444444
No 132
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=45.46 E-value=98 Score=29.08 Aligned_cols=68 Identities=7% Similarity=-0.067 Sum_probs=39.8
Q ss_pred EEEEecCCCeeecCCCCCCeEEEEeeeeEEEE-EeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 760 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWT-SKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 760 ~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~-~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
....++||...-..-.....+++|++|..++. ..+ |+. ..+.+||++--- .+.+ ..+++.++++++++
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~--g~~---~~L~aGD~i~~~---~~~~--H~~~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLAT--GEV---HPIRPGTMYALD---KHDR--HYLRAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCC--CEE---EEeCCCeEEEEC---CCCc--EEEEcCCCEEEEEE
Confidence 34567788755332222246999999999987 321 222 368899986321 2333 33444477776665
No 133
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=45.21 E-value=2.3 Score=37.95 Aligned_cols=41 Identities=10% Similarity=-0.073 Sum_probs=33.3
Q ss_pred cccccccccCCccccCCCCCcccccccccCCCCCcc--cceeee
Q 002099 918 HGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPL--ETFYVN 959 (967)
Q Consensus 918 ~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~--~~~~~~ 959 (967)
..++.|+ +..+++++.+++|++..|++.|++..+- +.+.+|
T Consensus 47 ~is~~eL-a~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 47 RVTATVI-AELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred ccCHHHH-HHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 3445574 8889999999999999999999998766 556555
No 134
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=44.39 E-value=1.5e+02 Score=27.90 Aligned_cols=39 Identities=5% Similarity=0.047 Sum_probs=31.2
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 002099 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (967)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~ 152 (967)
|.--..+.+..++.+++...+.++++....+|+...++.
T Consensus 77 gVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 77 GVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333356788999999999999999999988888877664
No 135
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=44.36 E-value=3.5e+02 Score=31.42 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHc
Q 002099 201 DGTAIVVYQLFFQMVL 216 (967)
Q Consensus 201 D~~aivlf~~~~~~~~ 216 (967)
+..++++|.++++++.
T Consensus 149 nvL~vIvFai~~GiAl 164 (428)
T PRK01663 149 DILQVLLFAVLFGFAL 164 (428)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 6788899998887654
No 136
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=43.19 E-value=2.5e+02 Score=30.57 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002099 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (967)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~ 143 (967)
+.+|++-|..|-.+|++.+.+..-+-+++++..++++...
T Consensus 201 ~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 201 TLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 4588899999999999999998888888888777776655
No 137
>COG2985 Predicted permease [General function prediction only]
Probab=42.83 E-value=62 Score=37.28 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCc--------HHHHHHHHHHHHHhhhccccccccccccccccccccChh---HHHHHHh
Q 002099 38 IFVGISLVLGIACRHLLRGTRVP--------YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPD---LLLAVFL 106 (967)
Q Consensus 38 l~~~~~l~~~~~~~~l~~r~~lP--------~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~i~l 106 (967)
+-+++.+.+|.+++.+ .+.+| ...+.+++|+++|.... .++.. ..++|. .+-++++
T Consensus 368 Lp~~ig~~LGvllGsI--p~~~pg~~s~~LG~aGGpLivaLiLG~ig~--------iGpl~---w~mP~~An~~lrelGl 434 (544)
T COG2985 368 LPFAIGLGLGVLLGSI--PFPLPGPGSFKLGNAGGPLIVALILGFIGA--------IGPLT---WFMPPGALLALRELGL 434 (544)
T ss_pred HHHHHHHHHHHhheee--EeccCCCceEeecccccHHHHHHHHHHhcc--------cCceE---EEcChhHHHHHHHHHH
Confidence 3345556666666654 23333 34567888888887642 12111 123442 3445555
Q ss_pred HHHhhhhhhcCCHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc-ccccHHHHHHHH
Q 002099 107 PALLFESSFAMEVH---QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALL 180 (967)
Q Consensus 107 ~~llF~~g~~~~~~---~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgail-s~Tdp~av~~il 180 (967)
.+.|-..|++---+ .+-...-+++..+.+-.+++.+.++++.+++. .++|. .+.|++. +-|||++....-
T Consensus 435 ~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~--kmn~~--~l~G~laGs~T~ppaLa~an 508 (544)
T COG2985 435 ALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVL--KMNWL--LLCGALAGSMTDPPALAFAN 508 (544)
T ss_pred HHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH--hccHH--HHhhHHhcCCCChHHHHHHh
Confidence 54444444432221 22245566677777777788888888888887 45553 3445444 458888864443
No 138
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=42.59 E-value=78 Score=31.04 Aligned_cols=67 Identities=9% Similarity=0.017 Sum_probs=43.5
Q ss_pred CCCe-eecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEcHH
Q 002099 766 SGVT-LYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 840 (967)
Q Consensus 766 ~ge~-I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~~~ 840 (967)
+|+. .++..+ .+.+|++++|.+.+...+. |+... ..+++||+|=--. |. +.+-++..+|..+.|.+.
T Consensus 37 pn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~-v~L~eGd~flvP~---gv--pHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 37 PNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKRED-VPIREGDIFLLPP---HV--PHSPQRPAGSIGLVIERK 104 (159)
T ss_pred CCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEE-EEECCCCEEEeCC---CC--CcccccCCCcEEEEEEeC
Confidence 4433 366644 7999999999999976653 43222 4789998872222 22 334455678888888765
No 139
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=41.31 E-value=8.3e+02 Score=30.78 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002099 233 SLGAVGMGLAFGIASVLWLG 252 (967)
Q Consensus 233 ~~g~i~~G~~~g~~~~~~l~ 252 (967)
..||..+|..+|.+...++.
T Consensus 191 ~~gG~~~Gaa~Gv~~Gli~~ 210 (764)
T TIGR02865 191 YIGGSGAGAAGGVVIGVILG 210 (764)
T ss_pred HhcCchHhHHHHHHHHHHHH
Confidence 35566666666666544333
No 140
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=41.02 E-value=41 Score=28.27 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=27.5
Q ss_pred ecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 764 KLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 764 ~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
..||..=..-. .+.+..|++|.|.+... +|... .+++||.|
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~--~G~~~---~~~aGD~~ 54 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE--DGETV---TFKAGDAF 54 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET--TTEEE---EEETTEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC--CCCEE---EEcCCcEE
Confidence 34555433332 28888999999999743 45443 68899876
No 141
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=39.49 E-value=4.3e+02 Score=29.43 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 173 PVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGA-IIKFLAQVSLGAVGMGLAFGIASVLWL 251 (967)
Q Consensus 173 p~av~~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~G~~~g~~~~~~l 251 (967)
..+..-+...+|+|-..++-+.|.- +-+.++.. .....+|.. +... +...+.+.++|.+++++..+.+
T Consensus 76 a~iw~~i~t~~glPvStThalvGal--------~G~~l~~~--g~~~v~w~~~~~~I-~~~wv~sPlia~~~a~~l~~~~ 144 (326)
T PF01384_consen 76 AAIWLLIATWLGLPVSTTHALVGAL--------IGAGLASG--GFSAVNWSKGLLKI-VLSWVISPLIAFILAYILYRLI 144 (326)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHH--------HHHHHHHh--hhhhchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566788888777776642 12221111 112345553 3332 2233445556666666655555
Q ss_pred hhhc
Q 002099 252 GFIF 255 (967)
Q Consensus 252 ~~~~ 255 (967)
++..
T Consensus 145 ~~~~ 148 (326)
T PF01384_consen 145 RRIF 148 (326)
T ss_pred HHHH
Confidence 5443
No 142
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=39.12 E-value=1.4e+02 Score=23.93 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhh
Q 002099 529 NLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLAS 574 (967)
Q Consensus 529 ~~~~~r~~~l~~~~~~~~~~~~~g~i~~~~~~~l~~~~~~~~d~~~ 574 (967)
.+.++...++...++.+....+.|.|+.+-+......+|...+...
T Consensus 8 el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~ 53 (59)
T PF10925_consen 8 ELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQ 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3556677788889999999999999999999999999988876543
No 143
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=38.47 E-value=7e+02 Score=29.06 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=57.7
Q ss_pred hHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-H------HHHHHhhcccccccHHHHHH
Q 002099 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWS-W------KTSLLLGGLLSATDPVAVVA 178 (967)
Q Consensus 106 l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~-~------~~alllgails~Tdp~av~~ 178 (967)
+..++...--+.+...+....+-++...+..++..+++.+... ++. +.+ + ..+++.+- +..+..++.+
T Consensus 211 VfaliA~~~~~~g~~~l~~l~~~l~~~~~~~~l~~~vv~~~i~-~~~--~~np~~~~k~~~~~~~~Af--sT~SS~atLP 285 (437)
T PRK11283 211 VFALIAVTVANFGFASLWPLAKLVLLVYFAILFFALVVLGIVA-RLC--GLSIWILIRILKDELILAY--STASSETVLP 285 (437)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--CCCHHHHHHHHHHHHHHHh--eccchhhhHH
Confidence 3344444555577777776555544433332222222222222 222 222 2 23333332 2233333333
Q ss_pred ----HHhhcCCCcchhhhhh--hhhhHHHHHHHH--HHHHHHHHHccCCcCHHHHH
Q 002099 179 ----LLKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAII 226 (967)
Q Consensus 179 ----il~~l~~~~~l~~li~--gesl~nD~~aiv--lf~~~~~~~~~~~~~~~~~~ 226 (967)
.++++|+|+++.+.+. |.+.=.|++++- +..++.+-..+-+.++.+.+
T Consensus 286 ~~~~~~e~lGv~~~ia~fvlPLGat~nmdG~aly~~l~~iFiaq~~Gi~l~~~~~~ 341 (437)
T PRK11283 286 RIIEKMEAYGAPKSITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEI 341 (437)
T ss_pred HHHHHHHHcCcCccceeEEeecccccCCCccHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3467899999987775 777777877653 33344444445556655443
No 144
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=38.29 E-value=1.1e+02 Score=33.18 Aligned_cols=156 Identities=13% Similarity=0.182 Sum_probs=83.1
Q ss_pred HhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC-CC-----CcHHHHHHhhcccccccHHHHHH
Q 002099 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YD-----WSWKTSLLLGGLLSATDPVAVVA 178 (967)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~-~~-----~~~~~alllgails~Tdp~av~~ 178 (967)
.+.+.+|..|-++|++.-.+..++-..+-..=+++..++ ++....+++ .| +--...+.+=+.++.|....-.+
T Consensus 50 il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~-g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~a 128 (314)
T TIGR00793 50 ILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVV-AAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYAS 128 (314)
T ss_pred HHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHH-HHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHH
Confidence 355678999999999887666665555444444444433 444444443 22 21245666667778888888889
Q ss_pred HHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002099 179 LLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDT 258 (967)
Q Consensus 179 il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~ 258 (967)
+..+.|-+.+.+... -.-+||+=-+.+ ++++...-.++.+...+..++ -+++|+++|=+-.. +|.....
T Consensus 129 L~~qyGd~~D~gA~~--i~sl~~GPf~TM--i~LG~sGlA~ip~~~lv~~il-----PlliG~ilGNLD~~-~r~fl~~- 197 (314)
T TIGR00793 129 IMQQYGTKEEAGAFV--LMSLESGPLMTM--VILGTAGIASFEPHVFVGAVL-----PFLVGFALGNLDPE-LRDFFSK- 197 (314)
T ss_pred HHHHcCCHhhhhhhh--hhhhccCcHHHH--HHHhhccCCCCCHHHHHHHHH-----HHHHHHHHhcCCHH-HHHHhcc-
Confidence 999988665544322 233566543222 223333223455544433222 23456666654222 2222211
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 002099 259 VIEIALTLAVSYIAFFTA 276 (967)
Q Consensus 259 ~~~~~l~l~~~~~~~~~a 276 (967)
...+.++|..|.+.
T Consensus 198 ----~~~~lIpFf~FaLG 211 (314)
T TIGR00793 198 ----AVQTLIPFFAFALG 211 (314)
T ss_pred ----CCCeeeehhhhhhc
Confidence 22335666666555
No 145
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.15 E-value=54 Score=40.30 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccccCCeEEEeecCcee---EEEeeeeeccccc----cc
Q 002099 851 AVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIG---FLLEGFIKTHGLQ----EE 923 (967)
Q Consensus 851 ~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~---iLl~G~v~~~~~~----ee 923 (967)
++.+++...+.+++. .|+.++.+=++.++ .+.+...|.+|+.+..+++.+. ++++|.+...... ..
T Consensus 411 dI~~hL~~~lv~~vp------LF~~md~~~L~al~-~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~ 483 (727)
T KOG0498|consen 411 DIKRHLCLDLVRKVP------LFAGMDDGLLDALC-SRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFV 483 (727)
T ss_pred HHHHHHhHHHHhhCc------hhhcCCHHHHHHHH-HHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEE
Confidence 455666666666666 78888887788888 8889999999999988865543 8899988664322 00
Q ss_pred ---c-ccCCcc--------ccCCCCCcccccccccCCCCC
Q 002099 924 ---L-ITPPAA--------LIPSQGNLSFRSAETSGNLRP 951 (967)
Q Consensus 924 ---l-i~~~~~--------l~~~~~n~~~~~~~~~~~~~~ 951 (967)
+ -|+.+| ..|+ +++.+.++.+.+.++
T Consensus 484 ~~~L~~Gd~~GeEl~~~~~~~p~--t~TVralt~~el~~L 521 (727)
T KOG0498|consen 484 VAILGPGDFFGEELLTWCLDLPQ--TRTVRALTYCELFRL 521 (727)
T ss_pred EEEecCCCccchHHHHHHhcCCC--CceeehhhhhhHHhc
Confidence 0 133344 2555 777777776555443
No 146
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=36.87 E-value=6.3e+02 Score=28.10 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=43.1
Q ss_pred HhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH--------HHHHHhhcccccccHHHH
Q 002099 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW--------KTSLLLGGLLSATDPVAV 176 (967)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~--------~~alllgails~Tdp~av 176 (967)
.+.+.+|..|-.+|++.-.+..++...+.+.=+.+...+ ++....++ +-.+ ...+...+.+.-+|+..-
T Consensus 52 l~~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~-~~~~~~~~--g~~~i~~gl~~G~s~la~~a~l~~~N~~ly 128 (326)
T PRK05274 52 ILAVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALV-GVIAGKFI--GEEGIRLGGFAGLSTLAIIAAMDNTNGGLY 128 (326)
T ss_pred HHHHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHH-HHHhhhcc--hHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 345678999999999887666655554433333333322 33333333 2111 234444556666666666
Q ss_pred HHHHhhcCCC
Q 002099 177 VALLKELGAS 186 (967)
Q Consensus 177 ~~il~~l~~~ 186 (967)
.+++.+.+-+
T Consensus 129 ~~~~~~~g~~ 138 (326)
T PRK05274 129 AALMGQYGTK 138 (326)
T ss_pred HHHHHHhCCC
Confidence 6666555543
No 147
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.86 E-value=9.7e+02 Score=30.27 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=24.9
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHHHHHHHHc
Q 002099 186 SKKLNTIIEGESLMNDGTAIVVYQLFFQMVL 216 (967)
Q Consensus 186 ~~~l~~li~gesl~nD~~aivlf~~~~~~~~ 216 (967)
-..+......+...++..|+.+|.+.+-+..
T Consensus 540 f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k 570 (798)
T KOG3599|consen 540 FIDFTEVAQWNIAARNLLAFLVFLTTIKLWK 570 (798)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888999999999999888777664
No 148
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=36.55 E-value=5.2e+02 Score=27.05 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=23.9
Q ss_pred cCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002099 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKL 150 (967)
Q Consensus 116 ~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~ 150 (967)
--+++.+|+++++++.-...|.+++.+......++
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~ 111 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALL 111 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999887777777666554443333
No 149
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=36.34 E-value=7.6e+02 Score=28.85 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002099 227 KFLAQVSLGAVGMGLAFGIA 246 (967)
Q Consensus 227 ~~~~~~~~g~i~~G~~~g~~ 246 (967)
..+.+.+..|++.|+++|.+
T Consensus 353 ~~~~~e~~v~~~~g~~~g~~ 372 (449)
T TIGR00400 353 KVILREICVSILVGAILASV 372 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444445556665544
No 150
>COG0679 Predicted permeases [General function prediction only]
Probab=35.79 E-value=3.5e+02 Score=29.79 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=30.4
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHH
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGP 135 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~ 135 (967)
+.+.....|..++..|..++.+..++...++...+..
T Consensus 196 ~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~ 232 (311)
T COG0679 196 DLLASAASPLALIALGLSLAFLKLKGSKPPIILIALS 232 (311)
T ss_pred HHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHH
Confidence 6688889999999999999997777777777666555
No 151
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=34.20 E-value=1.2e+02 Score=23.28 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 002099 538 LNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDL 572 (967)
Q Consensus 538 l~~~~~~~~~~~~~g~i~~~~~~~l~~~~~~~~d~ 572 (967)
-.+..+++.++..+|.|+++.+...+..-|..+..
T Consensus 12 G~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999988888876643
No 152
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=32.89 E-value=7.5e+02 Score=27.75 Aligned_cols=142 Identities=20% Similarity=0.179 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcHH--HH-HHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 37 VIFVGISLVLGIACRHLLRGTRVPYT--VA-LLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 37 ll~~~~~l~~~~~~~~l~~r~~lP~~--v~-lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
....++.++++...+.++..+++|.. .+ .+++|++.+.... . -.-|..+...+..++=-..
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~-----------~-----l~~P~~l~~~~q~ilG~~i 71 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGL-----------T-----LPLPRGLFKAGQVILGIMI 71 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc-----------c-----ccCChHHHHHHHHHHHHHH
Confidence 44556666777777777777777743 33 3445555543211 1 1236777888888888888
Q ss_pred hhcCCHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchh
Q 002099 114 SFAMEVHQI---KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLN 190 (967)
Q Consensus 114 g~~~~~~~l---~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~ 190 (967)
|.++....+ ++++...+...+. ++....+.|+...-.- ++|-.+|++ |+ +|-...+.+.+-+|.|.+.++-
T Consensus 72 g~~~t~s~l~~l~~~w~~~~~v~~~-tl~~s~l~g~ll~r~~--~~~~~Ta~~-gs--~PGgas~m~~iA~d~gAd~~~V 145 (352)
T COG3180 72 GASLTPSVLDTLKSNWPIVLVVLLL-TLLSSILLGWLLKRFS--ILPGNTAFL-GS--SPGGASAMVSIAQDYGADLRLV 145 (352)
T ss_pred hhhcCHHHHHHHHHcccHHHHHHHH-HHHHHHHHHHHHHHhc--CCCcchhhH-hc--CCchHHHHHHHHHHhCCChhHH
Confidence 998887765 4444444444333 3333333344443332 355555543 32 4445555666678999998887
Q ss_pred hhhhhhhhHH
Q 002099 191 TIIEGESLMN 200 (967)
Q Consensus 191 ~li~gesl~n 200 (967)
.+...--++-
T Consensus 146 Al~Q~lRvl~ 155 (352)
T COG3180 146 ALMQYLRVLF 155 (352)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 153
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=31.61 E-value=3.3e+02 Score=27.49 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHH
Q 002099 239 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMF 294 (967)
Q Consensus 239 ~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~ 294 (967)
+|++.+++..+.-++..+....+.+-.+...+.++... ........-.+++++++
T Consensus 134 ~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~~~-~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 134 LGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAALLA-RLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-HhCCCcCHHHHHHHHHh
Confidence 45555554333223322333344455555555555444 33233344444444443
No 154
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=31.36 E-value=1.2e+02 Score=28.56 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=33.6
Q ss_pred ccEEEEecCCCee-ecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 758 STKEIMKLSGVTL-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 758 ~~~~~~~~~ge~I-~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
..+...+++|+-+ .+--...+..|+|++|...+...+ +.. .+++||++
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~---~~~---~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG---EEV---EVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC---EEE---EecCCCEE
Confidence 3556677788775 455555799999999999998653 222 56777753
No 155
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=30.88 E-value=6.2e+02 Score=26.19 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHHHHHHH
Q 002099 145 GAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIV 206 (967)
Q Consensus 145 ~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD~~aiv 206 (967)
|+++.-++.........-++|.++|+|...+..+- +.+-.++......+..++...+.++
T Consensus 10 gYia~r~~G~r~Gl~ltg~~GGlvSSTA~t~~la~--~~r~~p~~~~~~~~~i~lA~~~m~~ 69 (211)
T PF13194_consen 10 GYIAVRLLGPRRGLLLTGLLGGLVSSTATTVSLAR--RSRENPELSRLLAAGILLASAVMFV 69 (211)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHH--HHhhCcchhHHHHHHHHHHHHHHHH
Confidence 44444333224566778889999998876665543 3333455556666666666655443
No 156
>KOG3787 consensus Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]
Probab=30.72 E-value=3e+02 Score=31.66 Aligned_cols=36 Identities=36% Similarity=0.554 Sum_probs=23.4
Q ss_pred ccccHHHHHHHHhhcCCCcchhhhhh--hhhhHHHHHH
Q 002099 169 SATDPVAVVALLKELGASKKLNTIIE--GESLMNDGTA 204 (967)
Q Consensus 169 s~Tdp~av~~il~~l~~~~~l~~li~--gesl~nD~~a 204 (967)
|+|=|...-++-+++|+++|+++.+. |..+=-|++|
T Consensus 316 sATLPitfkCleEn~gVD~RiTRFVLPvGATINMDGtA 353 (507)
T KOG3787|consen 316 SATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTA 353 (507)
T ss_pred cccchHHHHHHHHhCCCCcceeeeecccCceecCChHH
Confidence 44555555555556999999988776 5544445554
No 157
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=30.07 E-value=4.8e+02 Score=28.90 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHcc
Q 002099 138 MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (967)
Q Consensus 138 ~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~ 217 (967)
++-.+++......+.|...|+..++++| .++||-|+-+|+....+.| ++|-++-..-..+-..+...
T Consensus 195 iiFpivv~~~~~ll~P~a~pLig~Lm~G------------nl~rEsgv~~rLs~taqn~-l~nivTi~LGl~vGat~~a~ 261 (360)
T PF03977_consen 195 IIFPIVVTILVGLLLPSAAPLIGMLMFG------------NLLRESGVVERLSKTAQNE-LMNIVTIFLGLTVGATMTAE 261 (360)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHH
Q ss_pred CCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002099 218 KSFGWGA--IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (967)
Q Consensus 218 ~~~~~~~--~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~ 256 (967)
.-.++.. ++..-...+..+.+-|+++|++..++.+.-.|
T Consensus 262 ~fL~~~tl~I~~LGl~Af~~~tagGvl~~k~mn~f~k~KiN 302 (360)
T PF03977_consen 262 TFLNPQTLKILVLGLVAFAFSTAGGVLFAKLMNLFSKGKIN 302 (360)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCC
No 158
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.64 E-value=1.1e+02 Score=20.93 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHHHHHHHHHccccchHhHHHHHHHH
Q 002099 690 LIDYIQNLEKVGLLEEKEMLHLHDAV 715 (967)
Q Consensus 690 ~~~~~~~l~~~G~l~~~e~~~l~~~i 715 (967)
..+.++.++.+|.++++|+.+..+.+
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34567889999999999998766654
No 159
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=29.14 E-value=1.8e+02 Score=32.37 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=32.3
Q ss_pred HhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002099 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (967)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~ 143 (967)
.+|+..|.-|..++++.+-+...+.+++++..++++..+
T Consensus 204 lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~ 242 (326)
T PRK05274 204 LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIP 242 (326)
T ss_pred EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchh
Confidence 788888889999999999998888888887766666544
No 160
>COG3371 Predicted membrane protein [Function unknown]
Probab=28.73 E-value=5.3e+02 Score=25.89 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHHHHhhh
Q 002099 56 GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLV 127 (967)
Q Consensus 56 r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l~~~~~ 127 (967)
|.+-+.-..+++.|+.+...+- ++ ....|+.+.....-+++|.+..-+.....+++..
T Consensus 73 k~~~~g~~ll~is~lfLaLVGV--------Fp------Egt~pH~~vs~~ffll~fi~~~i~si~~~~~~~~ 130 (181)
T COG3371 73 KIENYGGALLIISGLFLALVGV--------FP------EGTPPHVFVSILFFLLSFIAMLIYSIGRLLRNRS 130 (181)
T ss_pred HhhhcchHHHHHHHHHHHheee--------CC------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5555655677888888776531 11 1235777666666666777766666666555333
No 161
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=28.59 E-value=8.2e+02 Score=29.10 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=41.9
Q ss_pred HHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHccccchHhHHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhhC
Q 002099 663 LEDVRVNFPQVLH-VVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH 741 (967)
Q Consensus 663 L~~l~~~~p~i~~-~l~t~~~~~~ll~~~~~~~~~l~~~G~l~~~e~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~ 741 (967)
+++|+.++..+.. .++++...+..-....+.+-.+..+--++.+......+++....+ ++.. .+++...
T Consensus 131 ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe---~nqd-------pdF~e~e 200 (575)
T KOG2150|consen 131 IDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVE---SNQD-------PDFLEDE 200 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHH---hccC-------chhhhhh
Confidence 4555555555443 334333333333333333333433444444433344444433332 2111 2577777
Q ss_pred CCCCCCChhhhHHhhhccE
Q 002099 742 PLLRELPPSVREPLELSTK 760 (967)
Q Consensus 742 ~lF~~l~~~~l~~l~~~~~ 760 (967)
.+..+|+-+..........
T Consensus 201 ~iYd~l~le~~e~~~~~~~ 219 (575)
T KOG2150|consen 201 TIYDDLNLEELEASMDAVA 219 (575)
T ss_pred HHhhccCchhhhhhHhhhc
Confidence 7777777777666655533
No 162
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=28.43 E-value=1e+03 Score=28.00 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=30.2
Q ss_pred HHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHH
Q 002099 178 ALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIK 227 (967)
Q Consensus 178 ~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~ 227 (967)
..+|+.+-.+.+...+.+--+.||++.-+.-...+-....-+.+..+...
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~ 321 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIV 321 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHH
Confidence 34556554577888889999999999776554433322222344444433
No 163
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=28.22 E-value=6.8e+02 Score=28.56 Aligned_cols=100 Identities=20% Similarity=0.136 Sum_probs=44.4
Q ss_pred HhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH-------HHHHH--hhcccc-cccHH
Q 002099 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW-------KTSLL--LGGLLS-ATDPV 174 (967)
Q Consensus 105 ~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~-------~~all--lgails-~Tdp~ 174 (967)
++..++-....+.+.+.+....+-++...+...+...+......+... +.+. ..+++ ++.--| +|=|+
T Consensus 187 gv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~--~~np~~~~~~~~~~~l~Af~T~SS~atlP~ 264 (390)
T PF00375_consen 187 GVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLT--RKNPFKFLKAMLPALLTAFSTSSSAATLPV 264 (390)
T ss_dssp HHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TT--T--HHHHHHHTHHHHHHHHHHT-TTTSHHH
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc--CCCHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence 344444445556777777766554444333322222333222222222 2221 12222 332223 33344
Q ss_pred HHHHHHhhcCCCcchhhhh--hhhhhHHHHHHHH
Q 002099 175 AVVALLKELGASKKLNTII--EGESLMNDGTAIV 206 (967)
Q Consensus 175 av~~il~~l~~~~~l~~li--~gesl~nD~~aiv 206 (967)
..-+.-+++|.++++.+.+ .|-+.=-|+.++.
T Consensus 265 ~~~~~~~~~gv~~~i~~fv~Plg~t~n~~G~a~~ 298 (390)
T PF00375_consen 265 TIECLEENLGVSRSIASFVLPLGATINMDGTALY 298 (390)
T ss_dssp HHHHHHT-TT--HHHHHHHHHHHTTS--HHHHHH
T ss_pred HHHHHHHhcCCCcccceeeechhccccCCccchH
Confidence 4444445589999998777 4666666777554
No 164
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=28.13 E-value=6.6e+02 Score=25.64 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=20.8
Q ss_pred chhhhhhhhhhHHHHHHHHHH-HHHHHHHc
Q 002099 188 KLNTIIEGESLMNDGTAIVVY-QLFFQMVL 216 (967)
Q Consensus 188 ~l~~li~gesl~nD~~aivlf-~~~~~~~~ 216 (967)
++.-++.--+.+-|+.+.+.+ .++.+...
T Consensus 2 ~l~~lLtf~aG~iDa~~fl~~~~~F~s~~T 31 (209)
T PF06912_consen 2 RLALLLTFIAGFIDAYSFLALGGVFVSFMT 31 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHhH
Confidence 344566677889999999988 66666543
No 165
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=27.98 E-value=1.2e+02 Score=30.39 Aligned_cols=73 Identities=10% Similarity=0.002 Sum_probs=46.2
Q ss_pred EEEEe-cCCC-eeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 760 KEIMK-LSGV-TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 760 ~~~~~-~~ge-~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
....+ .+|+ .-++- ++.+.+|++++|...+...+ +|+... ..+++||+|=--. |. +.+-++..+|..+.|
T Consensus 36 ~VmvvgGpn~r~d~H~-~~tdE~FyqleG~~~l~v~d-~g~~~~-v~L~eGd~fllP~---gv--pHsP~r~~~tv~Lvi 107 (177)
T PRK13264 36 IVMVVGGPNARTDFHY-DPGEEFFYQLEGDMYLKVQE-DGKRRD-VPIREGEMFLLPP---HV--PHSPQREAGSIGLVI 107 (177)
T ss_pred EEEEEccCCccccccc-CCCceEEEEECCeEEEEEEc-CCceee-EEECCCCEEEeCC---CC--CcCCccCCCeEEEEE
Confidence 34444 4673 44455 56799999999999998766 443222 3688998872222 22 233345678888888
Q ss_pred cHH
Q 002099 838 ESD 840 (967)
Q Consensus 838 ~~~ 840 (967)
.+.
T Consensus 108 E~~ 110 (177)
T PRK13264 108 ERK 110 (177)
T ss_pred EeC
Confidence 665
No 166
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.84 E-value=3.4e+02 Score=35.83 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=15.5
Q ss_pred hhCCCcchHHHHHHHHHHhh
Q 002099 278 EGADVSGVLTVMTLGMFYAA 297 (967)
Q Consensus 278 e~lg~Sgila~~~aGl~l~~ 297 (967)
+.-+..|.+|+.++++++.-
T Consensus 59 ~V~Nl~GiVGA~LAD~L~~L 78 (1355)
T PRK10263 59 PIHNLGGMPGAWLADTLFFI 78 (1355)
T ss_pred ccccccchHHHHHHHHHHHH
Confidence 45678899999988887753
No 167
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=27.29 E-value=8.5e+02 Score=26.65 Aligned_cols=27 Identities=4% Similarity=0.085 Sum_probs=15.7
Q ss_pred HHHhHHHhhhhhhcCCHHHHHHhhhhH
Q 002099 103 AVFLPALLFESSFAMEVHQIKRCLVQM 129 (967)
Q Consensus 103 ~i~l~~llF~~g~~~~~~~l~~~~~~i 129 (967)
..|.....-..|+-.|+..+-++..++
T Consensus 279 daFaVlFFvsVGmlf~P~~l~~~pl~v 305 (408)
T COG4651 279 DAFAVLFFVSVGMLFDPMILIQQPLAV 305 (408)
T ss_pred HHHHHHHHHHhhhhcCcHHhhcchHHH
Confidence 344444455667777777666554443
No 168
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=26.90 E-value=6.6e+02 Score=28.90 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=35.5
Q ss_pred ccccccHHHHHHH----HhhcCCCcchhhhhh--hhhhHHHHHHHH--HHHHHHHHHccCCcCHHHH
Q 002099 167 LLSATDPVAVVAL----LKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAI 225 (967)
Q Consensus 167 ils~Tdp~av~~i----l~~l~~~~~l~~li~--gesl~nD~~aiv--lf~~~~~~~~~~~~~~~~~ 225 (967)
.++..|..++.++ .+++|+|+++.+.+. |.+.=.|++++- +..++.+-..+-+.++.+.
T Consensus 259 AfsT~SS~AtLPv~m~~~~~lGv~~~i~~fvlPLGat~nmdG~aly~~i~~iFiaq~~Gi~l~~~~~ 325 (402)
T PRK13628 259 AFFTRSSAANIPVNMALCEKLGLDEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIPVDLPTA 325 (402)
T ss_pred HheehhHHhHHHHHHHHHHHcCcCccceeEEeecccccCCCccHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444454555544 367899999988777 887777877654 3334444334445555543
No 169
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=26.64 E-value=6.6e+02 Score=29.12 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=29.6
Q ss_pred HHhhcCCCcchhhhhh--hhhhHHHHHHHH--HHHHHHHHHccCCcCHHHHH
Q 002099 179 LLKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAII 226 (967)
Q Consensus 179 il~~l~~~~~l~~li~--gesl~nD~~aiv--lf~~~~~~~~~~~~~~~~~~ 226 (967)
..+++|+|+++.+.+. |.++=.|++++. +..++.+-..+-..++.+.+
T Consensus 279 ~~e~lgv~~~ia~fvlPLGatinm~G~aiy~~~~~~Fiaq~~G~~l~~~~~~ 330 (421)
T PRK13027 279 KLEHMGIKDSTVGLVIPTGYSFNLDGFSIYLTLAAVFIAQATNTPLSMHDLI 330 (421)
T ss_pred HHHHcCCCccceeEEeecccccCCCccHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3478999999987775 777767777553 33344444445555555443
No 170
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=26.47 E-value=5 Score=37.48 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.2
Q ss_pred cccccCCccccCCCCCcccccccccCCCCC
Q 002099 922 EELITPPAALIPSQGNLSFRSAETSGNLRP 951 (967)
Q Consensus 922 eeli~~~~~l~~~~~n~~~~~~~~~~~~~~ 951 (967)
.|| +...+++|.+++|+++.||+.|++..
T Consensus 39 Rel-A~~~~VNpnTv~raY~eLE~eG~i~t 67 (125)
T COG1725 39 REL-AKDLGVNPNTVQRAYQELEREGIVET 67 (125)
T ss_pred HHH-HHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 365 77789999999999999999999754
No 171
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=26.00 E-value=9.7e+02 Score=26.87 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=47.6
Q ss_pred HHHHHHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHh
Q 002099 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLL 164 (967)
Q Consensus 100 ~~~~i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alll 164 (967)
-|+++++..|+--+=+.+|.+.+.|.+.+.+...+.+++...++.+ ....++ |+++..+++.
T Consensus 25 ~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~-lvG~l~--G~~~~~~~~~ 86 (347)
T TIGR00783 25 NFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGI-LVGTLF--GLGFDHSLMY 86 (347)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHc--CCCHhHhhhe
Confidence 4788999999999999999999999988888777777776655543 344444 7787777665
No 172
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=25.94 E-value=2.4e+02 Score=28.71 Aligned_cols=50 Identities=8% Similarity=0.021 Sum_probs=34.0
Q ss_pred EEEecCCCee---------ecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 761 EIMKLSGVTL---------YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 761 ~~~~~~ge~I---------~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
...+.||... +++......+|++++|...+...+.+|+... ..+.+|+++
T Consensus 72 ~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~-~~v~pGd~v 130 (191)
T PRK04190 72 TTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARW-IEMEPGTVV 130 (191)
T ss_pred EEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEE-EEECCCCEE
Confidence 4555677743 3444445699999999999988766555332 368898874
No 173
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=25.83 E-value=1.9e+02 Score=32.68 Aligned_cols=105 Identities=10% Similarity=-0.099 Sum_probs=56.7
Q ss_pred HHhHHHhhhhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHhhcccccccHHHHHHHHhh
Q 002099 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YDWSWKTSLLLGGLLSATDPVAVVALLKE 182 (967)
Q Consensus 104 i~l~~llF~~g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~-~~~~~~~alllgails~Tdp~av~~il~~ 182 (967)
.++-..++.-|.+.|++.++..++....+++.-+ ....+.-...+.+.. ..+|...+ ..+.+++...|.-..+.+..
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v-~q~~i~pl~~f~~~~~~~lP~~~~-ag~~Lvtc~~p~g~~~~~~~ 194 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFV-PQYLIMPLLGFLLSKVLLLPAALA-AGLLLVTCVSPGGGGNYLTS 194 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHH-HHHHHHHHHHHhhhhHhhCCcccc-ceeEEEEeccCCcchhhhee
Confidence 4556678889999999999988776655443222 122221111111110 02332222 56677777777777666654
Q ss_pred cCCCcchhhhhhhhhhHHHHHHHHHHHHH
Q 002099 183 LGASKKLNTIIEGESLMNDGTAIVVYQLF 211 (967)
Q Consensus 183 l~~~~~l~~li~gesl~nD~~aivlf~~~ 211 (967)
+- ++.-..+.......+-..++++.-+.
T Consensus 195 ~~-~~g~v~lsilmT~~stv~avi~~pl~ 222 (371)
T KOG2718|consen 195 KR-LPGDVTLSILMTTISTVLAVILTPLL 222 (371)
T ss_pred ec-CCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 33 23334455555555555555554443
No 174
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=23.89 E-value=62 Score=36.62 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=37.4
Q ss_pred CCCeechhhhhcCCcceeEEEEc-ceEEEEEEcHHHHHHHHhhC
Q 002099 807 HGSNLGLYEVLIGKPYMSDMVTD-SVVLCFFIESDKILSILRSD 849 (967)
Q Consensus 807 ~G~~fGe~~ll~~~~~~atv~A~-~~~~l~~i~~~~f~~ll~~~ 849 (967)
.||-||-.++....||.++++.. .+|..+.+++.+|..++++.
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 48999999999999999888764 55999999999999998654
No 175
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.07 E-value=1.9e+03 Score=29.34 Aligned_cols=21 Identities=0% Similarity=-0.077 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002099 674 LHVVKTRQVTYSVLNHLIDYI 694 (967)
Q Consensus 674 ~~~l~t~~~~~~ll~~~~~~~ 694 (967)
.++++...+++.....+...|
T Consensus 691 ~~~~~~~~l~~~f~~~q~~ry 711 (1355)
T PRK10263 691 ADAAAEAELARQFAQTQQQRY 711 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 355555556655555555444
No 176
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=22.61 E-value=7.5e+02 Score=28.71 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=25.9
Q ss_pred HhhcCCCcchhhhhh--hhhhHHHHHHHH--HHHHHHHHHccCCcCHHHH
Q 002099 180 LKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAI 225 (967)
Q Consensus 180 l~~l~~~~~l~~li~--gesl~nD~~aiv--lf~~~~~~~~~~~~~~~~~ 225 (967)
.+++|+|+++.+.+. |.+.=.|++++- +..++.+-..+-+.++.+.
T Consensus 280 ~e~lgv~~~ia~fvlPLGatinm~G~aly~~~~~iFia~~~Gi~l~~~~~ 329 (428)
T PRK01663 280 MEKLGCKKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNTPLSIGHQ 329 (428)
T ss_pred HHHcCCCccceeEEeecccccCCCccHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 367899999877665 666555666542 2333333333444454443
No 177
>PRK11660 putative transporter; Provisional
Probab=22.58 E-value=1.4e+03 Score=27.55 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=43.6
Q ss_pred cCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCC-----------CCcHHHHHHhhcccccccHHHHHHHHhhcC
Q 002099 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY-----------DWSWKTSLLLGGLLSATDPVAVVALLKELG 184 (967)
Q Consensus 116 ~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~-----------~~~~~~alllgails~Tdp~av~~il~~l~ 184 (967)
..|+..+......++.+++.+.+-+.... -..-..... |..=..+-++|+.-+.++..-. ++-.+.|
T Consensus 272 ~~~~~~~~~ll~~a~~iaiv~~iesl~~~-~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srS-a~n~~aG 349 (568)
T PRK11660 272 TLSWDLIRALLPAAFSMAMLGAIESLLCA-VVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARS-AANVRAG 349 (568)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHH-HHHHhcC
Confidence 46888888888888888887765554322 221111111 1111344555555544433322 4445668
Q ss_pred CCcchhhhhhhh
Q 002099 185 ASKKLNTIIEGE 196 (967)
Q Consensus 185 ~~~~l~~li~ge 196 (967)
..+++..++.+-
T Consensus 350 arT~la~iv~a~ 361 (568)
T PRK11660 350 ATSPISAVIHAL 361 (568)
T ss_pred CCcHHHHHHHHH
Confidence 888887776553
No 178
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=22.24 E-value=1e+03 Score=25.77 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh---cccchhhHHH-HHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhh
Q 002099 228 FLAQVSLGAVGMGLAFGIASVLWLGFI---FNDTVIEIAL-TLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAA 297 (967)
Q Consensus 228 ~~~~~~~g~i~~G~~~g~~~~~~l~~~---~~~~~~~~~l-~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~ 297 (967)
++....+.++++|+++|.+..+..-|. ..|...+..+ -++.+ -.++.+..++++++|+..+.
T Consensus 13 f~~~alla~~li~~~~~~lG~flvlRr~sl~gdalsHa~L~Gval~--------~ll~~~~~~~a~~~~l~~a~ 78 (274)
T COG1108 13 FMQNALLASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLPGVALG--------FLLGINPLLGAFIFGLLAAL 78 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHH
Confidence 344566777888999998876665442 3555544322 12211 22346677777777776654
No 179
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=22.18 E-value=1.2e+03 Score=28.66 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002099 236 AVGMGLAFGIASVLWLG 252 (967)
Q Consensus 236 ~i~~G~~~g~~~~~~l~ 252 (967)
|.++|.++|.++.+++-
T Consensus 395 G~l~~~~~a~~~~~~vl 411 (650)
T PF04632_consen 395 GALLGAVLAFLYLFFVL 411 (650)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34456666655544433
No 180
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=22.12 E-value=1.7e+02 Score=27.49 Aligned_cols=49 Identities=6% Similarity=-0.008 Sum_probs=37.6
Q ss_pred cEEEEecCCCeeecCCCC-CCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 759 TKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~-~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
.....+.||+.+-.---+ .+...+|++|.+++... |+.. .+.+||++-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~~~---~l~~Gd~i~i 94 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GEKK---ELKAGDVIII 94 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CCce---EecCCCEEEE
Confidence 346678899999877776 77899999999999865 3333 6789998754
No 181
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=21.50 E-value=3e+02 Score=26.74 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhh
Q 002099 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (967)
Q Consensus 34 ~~~ll~~~~~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~ 113 (967)
..+-++...+++.|.+++ +|.+.=..+.+++.|.+==|...+...+++. -..|..=..++-++--+..
T Consensus 6 VPiTlQt~~v~l~g~~Lg---~~~g~~s~~~YlllG~~GlPVFagg~gG~~~---------l~gPTgGyl~gf~~~a~i~ 73 (148)
T PF02632_consen 6 VPITLQTLAVMLAGLLLG---PRRGFLSVLLYLLLGAIGLPVFAGGSGGLGY---------LLGPTGGYLLGFPLAALII 73 (148)
T ss_pred cchhHHHHHHHHHHHHHC---hHHHHHHHHHHHHHHHHCCchhcCCCCchHH---------HhcCCChHHHHHHHHHHHH
Confidence 344556566666666654 3345556778888886533443222111111 1223211122233333334
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhc-ccccccHH
Q 002099 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGG-LLSATDPV 174 (967)
Q Consensus 114 g~~~~~~~l~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllga-ils~Tdp~ 174 (967)
|+-.+...-+++....+...+.|.++..+......+... +.+|..++..|. ..-+.|..
T Consensus 74 g~~~~~~~~~~~~~~~~~~~~~g~~iiy~~G~~~l~~~~--~~~~~~al~~g~~pFip~Di~ 133 (148)
T PF02632_consen 74 GLLAERLKRSRSFLRLILAMLVGLLIIYIFGIIWLAFVT--GMSLSKALAAGVLPFIPGDIL 133 (148)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHhHHHHHHHHH--CCCHHHHHHHHhHHHHHHHHH
Confidence 443222111114556666667777776655433333322 688888888887 55666643
No 182
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.98 E-value=2.4e+02 Score=31.98 Aligned_cols=53 Identities=8% Similarity=-0.047 Sum_probs=0.0
Q ss_pred ccEEEEecCCCeeecCCCC-CCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 758 STKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 758 ~~~~~~~~~ge~I~~eGe~-~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
.+....+.||...-.-=-+ .+.+++|++|.+++...+.+|+.... .+++||++
T Consensus 246 s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~-~l~~GD~~ 299 (367)
T TIGR03404 246 AAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTF-DYQAGDVG 299 (367)
T ss_pred EEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEE-EECCCCEE
No 183
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.58 E-value=3.6e+02 Score=33.28 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=38.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHH----------HHHHccccchHhHHHHHHH
Q 002099 646 SVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQV-TYSVLNHLIDYIQ----------NLEKVGLLEEKEMLHLHDA 714 (967)
Q Consensus 646 ~~ii~e~~~~~~~a~~~L~~l~~~~p~i~~~l~t~~~-~~~ll~~~~~~~~----------~l~~~G~l~~~e~~~l~~~ 714 (967)
++.+++.++++++.++.+++++.+..++.+...+... .+..+...++.++ .+.-+|++.+++..++.+.
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~~ 293 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKEL 293 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHHH
Confidence 3444555555555555555555554444443332222 2222222222222 2223689999988888888
Q ss_pred HHHHHH
Q 002099 715 VQSDLK 720 (967)
Q Consensus 715 i~~~l~ 720 (967)
+++.-.
T Consensus 294 l~~~~~ 299 (646)
T PRK05771 294 IDKATG 299 (646)
T ss_pred HHHhcC
Confidence 877553
Done!