Query 002099
Match_columns 967
No_of_seqs 721 out of 4780
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 12:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 99.9 1.9E-22 6.6E-27 207.2 17.4 188 664-865 8-196 (198)
2 3bpz_A Potassium/sodium hyperp 99.9 9.2E-22 3.1E-26 202.9 17.8 189 663-866 8-197 (202)
3 4ev0_A Transcription regulator 99.9 5.7E-22 2E-26 206.5 12.3 201 738-958 1-202 (216)
4 1zyb_A Transcription regulator 99.9 3.7E-22 1.3E-26 210.6 8.0 211 730-958 12-225 (232)
5 3ukn_A Novel protein similar t 99.8 3.7E-21 1.3E-25 200.0 14.2 188 663-866 11-202 (212)
6 3d0s_A Transcriptional regulat 99.8 1.2E-21 4.2E-26 205.8 10.6 208 735-958 5-216 (227)
7 3dv8_A Transcriptional regulat 99.8 1.6E-21 5.3E-26 203.8 8.7 200 736-958 3-208 (220)
8 3dkw_A DNR protein; CRP-FNR, H 99.8 1.6E-21 5.6E-26 204.7 8.7 211 733-958 6-217 (227)
9 3fx3_A Cyclic nucleotide-bindi 99.8 3.2E-21 1.1E-25 204.1 10.8 205 733-958 8-216 (237)
10 3e97_A Transcriptional regulat 99.8 5.3E-21 1.8E-25 201.5 12.1 209 733-958 3-214 (231)
11 3dn7_A Cyclic nucleotide bindi 99.8 2.3E-20 8E-25 190.9 15.9 187 735-944 6-193 (194)
12 3iwz_A CAP-like, catabolite ac 99.8 1.3E-20 4.4E-25 198.3 13.2 207 735-958 10-226 (230)
13 1o5l_A Transcriptional regulat 99.8 8E-20 2.7E-24 190.0 15.0 198 741-957 4-202 (213)
14 2gau_A Transcriptional regulat 99.8 1.3E-20 4.3E-25 198.8 6.8 202 740-958 14-219 (232)
15 3ryp_A Catabolite gene activat 99.8 9.2E-20 3.1E-24 188.9 13.2 200 742-958 2-206 (210)
16 3mdp_A Cyclic nucleotide-bindi 99.8 1.9E-19 6.6E-24 173.8 13.1 132 735-866 5-139 (142)
17 2oz6_A Virulence factor regula 99.8 1.6E-19 5.3E-24 186.7 12.9 198 747-958 1-203 (207)
18 2fmy_A COOA, carbon monoxide o 99.8 6.7E-20 2.3E-24 191.5 8.8 202 735-958 3-207 (220)
19 3kcc_A Catabolite gene activat 99.8 2.4E-19 8.2E-24 192.5 12.6 198 744-958 54-256 (260)
20 2pqq_A Putative transcriptiona 99.8 1.6E-18 5.3E-23 168.8 15.7 132 735-866 4-135 (149)
21 3of1_A CAMP-dependent protein 99.8 4.7E-19 1.6E-23 188.2 12.7 207 734-952 5-223 (246)
22 1ft9_A Carbon monoxide oxidati 99.8 2.2E-19 7.6E-24 187.9 9.3 200 737-956 1-200 (222)
23 3gyd_A CNMP-BD protein, cyclic 99.8 5.5E-18 1.9E-22 172.2 19.0 132 735-866 38-169 (187)
24 2z69_A DNR protein; beta barre 99.8 2.6E-18 9E-23 168.3 15.1 133 734-866 10-143 (154)
25 3e6c_C CPRK, cyclic nucleotide 99.8 6.3E-19 2.2E-23 188.0 10.4 203 737-958 10-216 (250)
26 3shr_A CGMP-dependent protein 99.8 5.7E-18 1.9E-22 185.7 17.5 173 734-918 37-212 (299)
27 3tnp_B CAMP-dependent protein 99.7 1.7E-18 5.6E-23 198.4 10.8 176 735-918 144-322 (416)
28 2qcs_B CAMP-dependent protein 99.7 1.1E-17 3.7E-22 182.7 15.8 172 735-918 38-212 (291)
29 3idb_B CAMP-dependent protein 99.7 2E-18 6.8E-23 170.8 9.0 124 735-859 37-160 (161)
30 4din_B CAMP-dependent protein 99.7 4.1E-18 1.4E-22 193.1 10.5 205 735-951 129-350 (381)
31 3la7_A Global nitrogen regulat 99.7 3.6E-18 1.2E-22 181.3 8.7 194 749-958 30-232 (243)
32 2bgc_A PRFA; bacterial infecti 99.7 7.9E-18 2.7E-22 178.1 9.8 200 745-958 2-209 (238)
33 1vp6_A CNBD, cyclic-nucleotide 99.7 2.3E-17 7.8E-22 158.4 11.6 125 735-866 10-134 (138)
34 3ocp_A PRKG1 protein; serine/t 99.7 5.8E-17 2E-21 155.9 12.8 117 735-856 22-138 (139)
35 4f8a_A Potassium voltage-gated 99.7 1.1E-16 3.8E-21 157.8 14.0 121 735-860 26-148 (160)
36 4ava_A Lysine acetyltransferas 99.7 1.9E-16 6.6E-21 176.3 15.6 129 735-865 12-140 (333)
37 3pna_A CAMP-dependent protein 99.7 1.1E-16 3.8E-21 156.9 11.4 118 735-857 37-154 (154)
38 1wgp_A Probable cyclic nucleot 99.7 2E-17 6.7E-22 158.7 5.2 119 735-854 5-134 (137)
39 3shr_A CGMP-dependent protein 99.7 3.1E-16 1E-20 171.9 15.2 132 735-866 156-288 (299)
40 3b02_A Transcriptional regulat 99.7 6E-17 2.1E-21 165.6 8.1 176 762-958 2-178 (195)
41 1o7f_A CAMP-dependent RAP1 gua 99.6 1.8E-15 6E-20 177.0 12.7 130 735-865 41-172 (469)
42 2d93_A RAP guanine nucleotide 99.6 1.6E-15 5.5E-20 144.8 9.0 112 735-851 15-128 (134)
43 2qcs_B CAMP-dependent protein 99.6 1.3E-14 4.3E-19 158.3 17.2 126 736-861 157-283 (291)
44 2zcw_A TTHA1359, transcription 99.6 6E-16 2E-20 159.1 5.8 178 756-958 2-185 (202)
45 3tnp_B CAMP-dependent protein 99.6 6.9E-15 2.4E-19 168.3 12.6 132 735-866 266-403 (416)
46 3of1_A CAMP-dependent protein 99.6 5.9E-15 2E-19 156.5 10.9 116 735-854 124-239 (246)
47 4din_B CAMP-dependent protein 99.6 1.3E-14 4.5E-19 164.3 13.9 130 735-864 247-377 (381)
48 1zcd_A Na(+)/H(+) antiporter 1 99.5 7.8E-14 2.7E-18 153.5 14.1 307 99-452 61-382 (388)
49 3beh_A MLL3241 protein; transm 99.4 6.9E-15 2.4E-19 165.1 -0.2 124 736-866 228-351 (355)
50 4f7z_A RAP guanine nucleotide 99.4 3.6E-13 1.2E-17 171.5 15.6 117 735-852 41-159 (999)
51 1o7f_A CAMP-dependent RAP1 gua 99.4 3.4E-13 1.2E-17 157.5 11.9 121 735-859 336-458 (469)
52 3cf6_E RAP guanine nucleotide 99.3 3.4E-12 1.2E-16 154.1 11.3 114 735-852 31-146 (694)
53 4f7z_A RAP guanine nucleotide 99.2 2.1E-11 7.2E-16 155.3 13.1 110 735-848 336-447 (999)
54 2l0e_A Sodium/hydrogen exchang 98.2 1.6E-07 5.4E-12 63.5 -1.1 31 157-187 2-32 (33)
55 2htg_A NHE-1, NHE1 isoform of 97.6 2.8E-06 9.5E-11 54.4 -2.2 26 184-209 1-26 (28)
56 2k3c_A TMIX peptide; membrane 96.8 1.2E-05 4.3E-10 54.6 -5.9 30 268-298 2-31 (33)
57 2kbv_A Sodium/hydrogen exchang 96.5 0.00088 3E-08 43.1 1.6 25 387-411 2-26 (28)
58 3zux_A Transporter, ASBTNM; tr 95.4 3.7 0.00013 44.3 28.3 110 101-217 44-157 (332)
59 1y4e_A Sodium/hydrogen exchang 81.6 0.13 4.5E-06 32.7 -1.6 24 96-119 2-25 (27)
60 2ozj_A Cupin 2, conserved barr 70.1 18 0.00062 31.6 8.8 66 761-837 42-107 (114)
61 3fjs_A Uncharacterized protein 64.9 23 0.00078 31.1 8.3 67 759-836 38-104 (114)
62 3rns_A Cupin 2 conserved barre 62.1 21 0.00072 35.9 8.5 68 759-837 39-106 (227)
63 1yhf_A Hypothetical protein SP 55.3 47 0.0016 28.7 8.7 67 760-837 43-109 (115)
64 3idb_B CAMP-dependent protein 54.4 3.4 0.00012 38.9 0.8 106 840-952 19-139 (161)
65 2pfw_A Cupin 2, conserved barr 51.5 57 0.002 28.2 8.6 67 760-837 37-103 (116)
66 3pna_A CAMP-dependent protein 51.1 3.5 0.00012 38.5 0.3 82 872-954 45-137 (154)
67 3ibm_A Cupin 2, conserved barr 49.4 68 0.0023 30.3 9.3 88 759-855 58-156 (167)
68 3lwc_A Uncharacterized protein 48.0 90 0.0031 27.6 9.3 44 761-811 44-87 (119)
69 3jzv_A Uncharacterized protein 47.8 45 0.0015 31.6 7.6 45 761-811 57-101 (166)
70 3kgz_A Cupin 2 conserved barre 44.9 45 0.0016 31.2 7.1 45 761-811 48-92 (156)
71 4e2g_A Cupin 2 conserved barre 40.7 76 0.0026 27.9 7.7 77 759-846 43-123 (126)
72 3hhm_B NISH2 P85alpha; PI3KCA, 40.5 46 0.0016 36.2 7.1 115 648-774 213-330 (373)
73 3ocp_A PRKG1 protein; serine/t 38.6 15 0.0005 33.3 2.5 81 872-953 30-121 (139)
74 2zy9_A Mg2+ transporter MGTE; 38.0 1.1E+02 0.0039 34.3 10.3 31 179-210 434-464 (473)
75 3rns_A Cupin 2 conserved barre 37.8 77 0.0026 31.6 8.0 67 759-836 155-222 (227)
76 1dgw_A Canavalin; duplicated s 36.0 34 0.0012 32.9 4.8 52 759-812 43-94 (178)
77 3es1_A Cupin 2, conserved barr 35.6 51 0.0018 31.5 5.8 70 759-837 81-150 (172)
78 1o5u_A Novel thermotoga mariti 35.4 1.5E+02 0.0051 25.3 8.3 44 761-811 35-78 (101)
79 1v70_A Probable antibiotics sy 33.0 1E+02 0.0035 25.6 7.0 69 760-837 31-100 (105)
80 2bnm_A Epoxidase; oxidoreducta 32.0 1.4E+02 0.0048 28.7 8.7 70 761-837 121-196 (198)
81 4f8a_A Potassium voltage-gated 31.1 22 0.00075 32.8 2.4 47 872-919 34-83 (160)
82 3bpz_A Potassium/sodium hyperp 30.1 1E+02 0.0034 29.7 7.2 47 871-918 78-127 (202)
83 2i45_A Hypothetical protein; n 29.8 59 0.002 27.7 4.9 69 764-842 35-103 (107)
84 2gu9_A Tetracenomycin polyketi 29.3 80 0.0027 26.8 5.7 47 759-811 23-72 (113)
85 3d0j_A Uncharacterized protein 29.3 1.2E+02 0.004 27.8 6.6 65 771-840 44-110 (140)
86 3d82_A Cupin 2, conserved barr 28.8 82 0.0028 26.2 5.6 56 772-838 45-100 (102)
87 2z69_A DNR protein; beta barre 28.8 29 0.001 31.6 2.8 82 872-954 19-117 (154)
88 1vp6_A CNBD, cyclic-nucleotide 28.1 54 0.0018 29.1 4.5 82 871-953 17-107 (138)
89 2pyt_A Ethanolamine utilizatio 27.9 1.6E+02 0.0053 26.6 7.5 64 761-837 61-124 (133)
90 3es4_A Uncharacterized protein 27.3 61 0.0021 28.8 4.4 46 761-812 46-91 (116)
91 4axo_A EUTQ, ethanolamine util 26.8 1.4E+02 0.0049 27.7 7.1 51 776-837 83-133 (151)
92 1o4t_A Putative oxalate decarb 26.6 93 0.0032 27.9 5.8 46 760-811 60-106 (133)
93 1yfu_A 3-hydroxyanthranilate-3 25.6 1.5E+02 0.0051 28.2 6.9 64 769-840 48-112 (174)
94 3mdp_A Cyclic nucleotide-bindi 25.6 62 0.0021 28.8 4.4 47 871-918 12-61 (142)
95 2pqq_A Putative transcriptiona 25.1 29 0.00099 31.4 2.0 46 872-918 12-60 (149)
96 1zvf_A 3-hydroxyanthranilate 3 24.6 1.1E+02 0.0039 29.0 5.8 68 766-840 43-114 (176)
97 2ptm_A Hyperpolarization-activ 24.4 88 0.003 30.0 5.6 46 872-918 78-126 (198)
98 3h8u_A Uncharacterized conserv 23.9 1.4E+02 0.0049 26.0 6.5 71 759-837 41-112 (125)
99 1j58_A YVRK protein; cupin, de 23.5 1.8E+02 0.0061 31.5 8.4 74 760-837 260-334 (385)
100 3bcw_A Uncharacterized protein 23.5 71 0.0024 28.6 4.2 45 762-812 54-98 (123)
101 2d5f_A Glycinin A3B4 subunit; 23.1 1.4E+02 0.0049 33.6 7.5 57 755-811 365-422 (493)
102 3c3v_A Arachin ARAH3 isoform; 23.1 1.3E+02 0.0045 34.0 7.2 55 757-811 372-427 (510)
103 2qnk_A 3-hydroxyanthranilate 3 23.0 1.5E+02 0.005 30.6 6.7 70 762-839 34-106 (286)
104 1fxz_A Glycinin G1; proglycini 22.8 1.2E+02 0.004 34.2 6.7 54 758-811 339-393 (476)
105 2f4p_A Hypothetical protein TM 22.8 1.6E+02 0.0056 26.8 6.8 70 760-837 51-120 (147)
106 2q67_A Potassium channel prote 22.6 1.3E+02 0.0045 26.3 5.7 33 135-168 28-60 (114)
107 2xp1_A SPT6; transcription, IW 22.4 68 0.0023 30.8 4.1 38 739-782 12-49 (178)
108 2q30_A Uncharacterized protein 21.8 2.2E+02 0.0074 23.8 7.1 66 761-836 37-104 (110)
109 3vou_A ION transport 2 domain 21.7 1.4E+02 0.0047 27.4 6.0 38 132-170 28-65 (148)
110 3dkw_A DNR protein; CRP-FNR, H 21.7 56 0.0019 32.1 3.5 46 872-918 16-64 (227)
111 3l2h_A Putative sugar phosphat 21.5 1.3E+02 0.0046 27.7 6.0 46 760-811 49-96 (162)
112 3iwz_A CAP-like, catabolite ac 21.5 48 0.0016 32.6 3.0 84 871-955 17-117 (230)
113 1wgp_A Probable cyclic nucleot 20.9 61 0.0021 28.7 3.3 45 872-917 13-60 (137)
114 1y9q_A Transcriptional regulat 20.1 2.2E+02 0.0076 27.0 7.5 45 761-811 108-154 (192)
115 2opk_A Hypothetical protein; p 20.1 83 0.0029 27.3 3.9 45 764-812 37-84 (112)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.89 E-value=1.9e-22 Score=207.24 Aligned_cols=188 Identities=14% Similarity=0.222 Sum_probs=163.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHh-HHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhhCC
Q 002099 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (967)
Q Consensus 664 ~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~~~G~l~~~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~~ 742 (967)
.+++.+..++.++|+.++++..+..++++|+++.|+....++++ ..++.+.+..++..... .++++++|
T Consensus 8 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~----------~~~l~~~~ 77 (198)
T 2ptm_A 8 RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNC----------RDLVASVP 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHT----------HHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHH----------HHHHhcCc
Confidence 55677778899999999999999999999999999866566554 34555666665553222 57899999
Q ss_pred CCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcc
Q 002099 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (967)
Q Consensus 743 lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~ 822 (967)
+|+++++++++.+...++.+.|.||++|+++||+++++|+|.+|.|+++. .+|+ .+..+++|++|||.+++.+.|+
T Consensus 78 ~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~ 153 (198)
T 2ptm_A 78 FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERR 153 (198)
T ss_dssp GGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCC
T ss_pred chhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999986 3455 5678999999999999999999
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHH
Q 002099 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (967)
Q Consensus 823 ~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~ 865 (967)
.++++|.++|+++.|++++|.++++++|.+...+++.+..++.
T Consensus 154 ~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 154 VASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred ceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988887766654
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.87 E-value=9.2e-22 Score=202.87 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=164.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHh-HHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhhC
Q 002099 663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH 741 (967)
Q Consensus 663 L~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~~~G~l~~~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~ 741 (967)
-..++.+..++.++|+.++++..+..++++|+++.|+....++++ ..++.+.+..++..... .++++++
T Consensus 8 ~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~----------~~~l~~~ 77 (202)
T 3bpz_A 8 RRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNC----------RKLVASM 77 (202)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHT----------HHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHH----------HHHHhcC
Confidence 356677788899999999999999999999999999866566554 34555566655543221 5789999
Q ss_pred CCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCc
Q 002099 742 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP 821 (967)
Q Consensus 742 ~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~ 821 (967)
|+|+++++++++.+...++.+.|.||++|+++||+++++|||.+|.|+++. .+|+.. .+++|++|||.+++.+.+
T Consensus 78 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~~---~l~~G~~fGe~~~~~~~~ 152 (202)
T 3bpz_A 78 PLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKEM---KLSDGSYFGEICLLTRGR 152 (202)
T ss_dssp HHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCCE---EEETTCEECHHHHHHCSB
T ss_pred CchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeEE---EEcCCCEeccHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999974 345544 589999999999999999
Q ss_pred ceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 822 YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 822 ~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
+.++++|.++|+++.|++++|.++++++|.+...+.+.+..++..
T Consensus 153 ~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 153 RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888877764
No 3
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.86 E-value=5.7e-22 Score=206.52 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=163.2
Q ss_pred hhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhh
Q 002099 738 ISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL 817 (967)
Q Consensus 738 l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll 817 (967)
|+++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++..+..+++|++|||.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccc-cC
Q 002099 818 IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC-LR 896 (967)
Q Consensus 818 ~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~-~~ 896 (967)
.+.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+...+..+-+... +..+ ..
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~Rl~~~--L~~~~~~ 156 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREA--DLELDLLSFEEARNRVAYA--LLKLLRQ 156 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHT
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHH--HHHHhhc
Confidence 99999999999999999999999999999999999999999999888862 2333444334433311000 0000 11
Q ss_pred CeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 897 GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 897 ~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
+..+ ....++++ +++-.|++|++++|.++++++.|++..+.+++.+
T Consensus 157 ~~~~---------------~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 202 (216)
T 4ev0_A 157 GLGP---------------LFQIRHHE-LAALAGTSRETVSRVLHALAEEGVVRLGPGTVEV 202 (216)
T ss_dssp TCCS---------------EEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCcc---------------CCCCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 1111 11222546 5888999999999999999999999887776644
No 4
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.85 E-value=3.7e-22 Score=210.64 Aligned_cols=211 Identities=11% Similarity=0.033 Sum_probs=170.5
Q ss_pred CCCChhhHhhhCCCCCCCChhhhHHhhhc--cEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccC
Q 002099 730 KFPKISDLISAHPLLRELPPSVREPLELS--TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTH 807 (967)
Q Consensus 730 ~~~~~~~~l~~~~lF~~l~~~~l~~l~~~--~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~ 807 (967)
.+|+..++++++|+|+++++++++.+.++ ++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+++
T Consensus 12 ~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~ 91 (232)
T 1zyb_A 12 HMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEA 91 (232)
T ss_dssp HHHHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEES
T ss_pred HHHHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccC
Confidence 35566788999999999999999999998 9999999999999999999999999999999999888999999999999
Q ss_pred CCeechhhhhcCCc-ceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHH
Q 002099 808 GSNLGLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (967)
Q Consensus 808 G~~fGe~~ll~~~~-~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~ 886 (967)
|++|||.+++.+.+ +.++++|.++|+++.||+++|.++++++|.+...+++.+..++.. ..+....+...+..+-+.
T Consensus 92 G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~--~~~~~~~l~~~~~~~Rl~ 169 (232)
T 1zyb_A 92 PYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQN--LYSRLWDEPTLDLKSKII 169 (232)
T ss_dssp SEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHH--HHHHTTSCCCCSHHHHHH
T ss_pred CCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCHHHHHH
Confidence 99999999999988 999999999999999999999999999999999999999988875 223333443333332110
Q ss_pred hccccccccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 887 ERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 887 ~~~~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
. .+..+... .+ |.+...-++++ |++-.|++|++++|.++++++.|++..+.+++.+
T Consensus 170 ~--~L~~l~~~------~~-------~~~~~~~t~~~-lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I 225 (232)
T 1zyb_A 170 R--FFLSHCEK------PQ-------GEKTFKVKMDD-LARCLDDTRLNISKTLNELQDNGLIELHRKEILI 225 (232)
T ss_dssp H--HHHTTCSS------SS-------SCEEEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEE
T ss_pred H--HHHHHHhh------cC-------CeEEecCCHHH-HHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEE
Confidence 1 11111110 00 01222233556 5888999999999999999999999888776543
No 5
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.85 E-value=3.7e-21 Score=199.97 Aligned_cols=188 Identities=14% Similarity=0.206 Sum_probs=160.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccchHh-HHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhh
Q 002099 663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKV-GLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISA 740 (967)
Q Consensus 663 L~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~~~-G~l~~~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~ 740 (967)
-.+++.+..++.++|+.++++..+..++++|+++.|+. ...++++ ...+.+.+..++....+ ..+ .+
T Consensus 11 ~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~----------~~l-~~ 79 (212)
T 3ukn_A 11 RSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLN----------KEL-LQ 79 (212)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCC----------CGG-GG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHH----------HHH-Hh
Confidence 35567778899999999999999999999999999963 3334332 45666666666653322 234 48
Q ss_pred CCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCC
Q 002099 741 HPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK 820 (967)
Q Consensus 741 ~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~ 820 (967)
+|+|+++++++++.+...++.+.|.|||+|+++||+++++|+|.+|.|+++.. | ..+..+++|++|||.+++.+.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~---~--~~~~~l~~G~~fGe~~~~~~~ 154 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD---N--TVLAILGKGDLIGSDSLTKEQ 154 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS---S--CEEEEECTTCEEECSCCSSSS
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC---C--eEEEEecCCCCcCcHHhccCC
Confidence 99999999999999999999999999999999999999999999999999862 2 456789999999999999998
Q ss_pred --cceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 821 --PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 821 --~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
++.++++|.++|+++.|++++|.++++++|++...+++.+..+++.
T Consensus 155 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 155 VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999888877764
No 6
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.85 E-value=1.2e-21 Score=205.81 Aligned_cols=208 Identities=16% Similarity=0.204 Sum_probs=167.1
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++..+..+++|++|||.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 46899999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHH----HHHHHHhccc
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQD----MRALIAERSK 890 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~----l~~l~~~~~~ 890 (967)
+++.+.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++.... +....+...+ +...+.....
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl~~~L~~l~~ 162 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTN--NNLADLIFTDVPGRVAKQLLQLAQ 162 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887621 2222222222 2222201100
Q ss_pred cccccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 891 MTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 891 ~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.+ |. +.+. + ..+...-++++ +++-.|++|+++||.++++++.|++..+.+++.+
T Consensus 163 --~~--~~----~~~~-~----~~i~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 216 (227)
T 3d0s_A 163 --RF--GT----QEGG-A----LRVTHDLTQEE-IAQLVGASRETVNKALADFAHRGWIRLEGKSVLI 216 (227)
T ss_dssp --HH--EE----EETT-E----EEEECCCCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred --Hh--CC----cCCC-c----eEEcCCCCHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 01 00 0000 0 11222333556 5888999999999999999999999888776554
No 7
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.84 E-value=1.6e-21 Score=203.84 Aligned_cols=200 Identities=11% Similarity=0.110 Sum_probs=163.8
Q ss_pred hHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCe--ech
Q 002099 736 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN--LGL 813 (967)
Q Consensus 736 ~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~--fGe 813 (967)
++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++..+..++||++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred hhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccH----HHHHHHHHhcc
Q 002099 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTM----QDMRALIAERS 889 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~----~~l~~l~~~~~ 889 (967)
.+++.+.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++.... +....+.. +++..++....
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rl~~~L~~~~ 160 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVM--WLIEQIMWKSLDKRVASFLLEET 160 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999888887621 22222222 22332221111
Q ss_pred ccccccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 890 KMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 890 ~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.. . |.....-++++ +++-.|++|++++|.++++++.|++..+.+++.+
T Consensus 161 ~~---~-----------------~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 208 (220)
T 3dv8_A 161 SI---E-----------------GTNELKITHET-IANHLGSHREVITRMLRYFQVEGLVKLSRGKITI 208 (220)
T ss_dssp HH---H-----------------TSSEECCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hh---c-----------------CCceecCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 10 0 11112223546 5888999999999999999999999887776654
No 8
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.84 E-value=1.6e-21 Score=204.72 Aligned_cols=211 Identities=13% Similarity=0.161 Sum_probs=170.3
Q ss_pred ChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 733 ~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
...++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++..+..+++|++||
T Consensus 6 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G 85 (227)
T 3dkw_A 6 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA 85 (227)
T ss_dssp SSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEES
T ss_pred hHHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee
Confidence 45789999999999999999999999999999999999999999999999999999999988889998889999999999
Q ss_pred hhhhhcCCc-ceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhcccc
Q 002099 813 LYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKM 891 (967)
Q Consensus 813 e~~ll~~~~-~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~ 891 (967)
|.+++.+.| +.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+...+..+-+.. .+
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~Rl~~--~L 161 (227)
T 3dkw_A 86 EAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQR--IDEIETLSLKNATHRVVR--YL 161 (227)
T ss_dssp CTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HH
T ss_pred eHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHH--HH
Confidence 999999999 9999999999999999999999999999999999999999888762 223333333333321100 01
Q ss_pred ccccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 892 TTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 892 ~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
....... ..+ .+.+....++++ +++-.|++|++++|.+.++++.|++..+.+++.+
T Consensus 162 ~~~~~~~----~~~------~~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 217 (227)
T 3dkw_A 162 LTLAAHA----PGE------NCRVEIPVAKQL-VAGHLSIQPETFSRIMHRLGDEGIIHLDGREISI 217 (227)
T ss_dssp HHHHCSS----SSS------CCCCCCCSCTHH-HHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEE
T ss_pred HHhhhhc----CCC------CeEEEecCCHHH-HHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 0101000 011 012223334656 5889999999999999999999999988777654
No 9
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.84 E-value=3.2e-21 Score=204.06 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=166.2
Q ss_pred ChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 733 ~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
...++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHH----HHHHHHhc
Q 002099 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQD----MRALIAER 888 (967)
Q Consensus 813 e~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~----l~~l~~~~ 888 (967)
+.+++.+.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+...+ +..++...
T Consensus 88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~--~~~~~~l~~~~~~~Rl~~~L~~~ 165 (237)
T 3fx3_A 88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSL--VAQLEQLKAQTGAQRVAEFLLEL 165 (237)
T ss_dssp HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888762 23333333333 33322111
Q ss_pred cccccccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 889 SKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 889 ~~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.. .+..+..+. ...++++ |++-.|++|++++|.++++++.|+ ..+.+++.+
T Consensus 166 ~~--~~~~~~~~~---------------l~~t~~~-iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~~i~I 216 (237)
T 3fx3_A 166 CD--CDTGACEVT---------------LPYDKML-IAGRLGMKPESLSRAFSRLKAAGV-TVKRNHAEI 216 (237)
T ss_dssp CC--C-----EEE---------------CCSCTHH-HHHHTTCCHHHHHHHHHHHGGGTE-ECCTTEEEE
T ss_pred hh--hcCCCeEEE---------------ecCCHHH-HHHHhCCCHHHHHHHHHHHHHCCe-EeeCCEEEE
Confidence 10 111111122 2223546 588899999999999999999997 666555443
No 10
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.84 E-value=5.3e-21 Score=201.53 Aligned_cols=209 Identities=12% Similarity=0.074 Sum_probs=166.3
Q ss_pred ChhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 733 ~~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
+..++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+++|++||
T Consensus 3 ~~~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 82 (231)
T 3e97_A 3 GRLDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG 82 (231)
T ss_dssp CCHHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES
T ss_pred hHHHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhc--cH-HHHHHHHHhcc
Q 002099 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKL--TM-QDMRALIAERS 889 (967)
Q Consensus 813 e~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l--~~-~~l~~l~~~~~ 889 (967)
|.+++.+.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++.... +..... .. +++...+....
T Consensus 83 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~Rl~~~L~~~~ 160 (231)
T 3e97_A 83 ETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLN--DELIAFGQNTEAALTHVFANLY 160 (231)
T ss_dssp TTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHHH
T ss_pred eHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHhccChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887622 122110 11 23332221111
Q ss_pred ccccccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 890 KMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 890 ~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.-..- .+. ...+...-++++ |++-.|++|+++||.+.+|++.|++..+.+++.+
T Consensus 161 ~~~~~-~~~-------------~~~~~~~~t~~~-iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 214 (231)
T 3e97_A 161 RQRLA-AGV-------------PQPEVLPLGTQD-IMARTSSSRETVSRVLKRLEAHNILEVSPRSVTL 214 (231)
T ss_dssp HHHHH-HTC-------------SSTTEECCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEE
T ss_pred HhcCC-CCC-------------CceEecCCCHHH-HHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 10000 000 001122233556 5889999999999999999999999988877654
No 11
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.84 E-value=2.3e-20 Score=190.86 Aligned_cols=187 Identities=10% Similarity=-0.059 Sum_probs=129.1
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
+.+++++|.|.++++++++.+.+.++.+.+++|++|+++||+++++|+|.+|.|+++..+++|++.++..++||++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhcccccc
Q 002099 815 -EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (967)
Q Consensus 815 -~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~ 893 (967)
+++.+.|+.++++|.++|+++.||+++|.++++++|.+...+.+.+..++... .+....+...+.++ ++..
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~--~~~~~~l~~~~~~~------Rl~~ 157 (194)
T 3dn7_A 86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAA--QLRSKFQHMYSKEE------QYHN 157 (194)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHH--HHHHHHHHHC--------------
T ss_pred HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHH------HHHH
Confidence 78899999999999999999999999999999999999999988888877651 12222332222222 2222
Q ss_pred ccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCccccccc
Q 002099 894 CLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAE 944 (967)
Q Consensus 894 ~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~ 944 (967)
+.... ..+...-.+++ |++-.|++|++++|.++++.
T Consensus 158 ~L~~~--------------~~~~~~~t~~~-iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 158 FSSRF--------------PEFIQRVPQYL-LASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHC--------------hHHHHHCCHHH-HHHHhCCCHHHHHHHHHhhc
Confidence 22110 01222233556 59999999999999988764
No 12
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.3e-20 Score=198.29 Aligned_cols=207 Identities=12% Similarity=0.133 Sum_probs=155.3
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
...+++.|+|.++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+++|++|||.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC-cceeEEEEcceEEEEEEcHHHHHHHHhhC-----cHHHHHHHHHHHHHHHHHhhHHHHhhccHHH----HHHH
Q 002099 815 EVLIGK-PYMSDMVTDSVVLCFFIESDKILSILRSD-----PAVEDFLWQQSAIALSRILLPQIFEKLTMQD----MRAL 884 (967)
Q Consensus 815 ~ll~~~-~~~atv~A~~~~~l~~i~~~~f~~ll~~~-----p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~----l~~l 884 (967)
+++.+. |+.++++|.++|+++.||+++|.++++++ |.+...+.+.+..++... .+....+...+ +...
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~--~~~~~~l~~~~~~~Rl~~~ 167 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDT--TRKASRLAFLDVTDRIVRT 167 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHH
Confidence 999875 79999999999999999999999999999 999999999998888762 22333332222 2222
Q ss_pred HHhccccccccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 885 IAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 885 ~~~~~~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
+..... .+ |. ...+ + .+ ....++++ |++-.|++|++++|.++++++.|++..+.+++.+
T Consensus 168 L~~l~~--~~--~~-~~~~-~--~~------~~~lt~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 226 (230)
T 3iwz_A 168 LHDLSK--EP--EA-MSHP-Q--GT------QLRVSRQE-LARLVGCSREMAGRVLKKLQADGLLHARGKTVVL 226 (230)
T ss_dssp HHHHTT--ST--TC-EEET-T--EE------EEECCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHH--hh--CC-CCCC-C--ce------ecCCCHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEECCCEEEE
Confidence 211111 01 11 0000 0 11 11223556 5888999999999999999999999988777654
No 13
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.82 E-value=8e-20 Score=189.97 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=115.6
Q ss_pred CCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCC
Q 002099 741 HPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK 820 (967)
Q Consensus 741 ~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~ 820 (967)
-|.|+..++++.+.+...++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+++|++|||.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -cceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccccCCeE
Q 002099 821 -PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEI 899 (967)
Q Consensus 821 -~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~ 899 (967)
++.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+...+..+ ++..+.....
T Consensus 84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~--~~~~~~l~~~~~~~------Rl~~~L~~~~ 155 (213)
T 1o5l_A 84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVV--SEKLFFLTTKTLRE------KLMNFLVRHM 155 (213)
T ss_dssp CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------------------
T ss_pred CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHhhCCHHH------HHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888752 12222222222222 2222211100
Q ss_pred EEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCccccee
Q 002099 900 IEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFY 957 (967)
Q Consensus 900 i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~ 957 (967)
.. .|.+...-++++ +++-.|++|+++||.++++++.|++..+.+++.
T Consensus 156 ----~~------~g~~~~~~t~~~-lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~ 202 (213)
T 1o5l_A 156 ----NE------KRELTLPVTLEE-LSRLFGCARPALSRVFQELEREGYIEKHGRRIK 202 (213)
T ss_dssp ----------------------------------------------------------
T ss_pred ----cc------CCcccCCCCHHH-HHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEE
Confidence 00 012333334656 599999999999999999999999988876654
No 14
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.81 E-value=1.3e-20 Score=198.76 Aligned_cols=202 Identities=13% Similarity=0.148 Sum_probs=157.7
Q ss_pred hCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcC
Q 002099 740 AHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIG 819 (967)
Q Consensus 740 ~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~ 819 (967)
++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+++|++|||.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 57999999999999999999999999999999999999999999999999999888899988999999999999999999
Q ss_pred CcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHH----HHHHHHHhcccccccc
Q 002099 820 KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQ----DMRALIAERSKMTTCL 895 (967)
Q Consensus 820 ~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~----~l~~l~~~~~~~~~~~ 895 (967)
.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+... ++...+..... .+
T Consensus 94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~--~~~~~~l~~~~~~~Rl~~~L~~l~~--~~- 168 (232)
T 2gau_A 94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYA--ERRTVTLTQKHVRGRLAETLLILKE--NF- 168 (232)
T ss_dssp SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCHHHHHHHHHHHHHH--HH-
T ss_pred CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHH--Hc-
Confidence 999999999999999999999999999999999999999999888762 2222222222 22222201000 11
Q ss_pred CCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 896 RGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 896 ~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
|. . +.+ ..+...-++++ +++-.|++|+++||.++++++.|++..+.+++.+
T Consensus 169 -~~--~-~~~-------~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 219 (232)
T 2gau_A 169 -GF--E-NDG-------ATLSIYLSREE-LATLSNMTVSNAIRTLSTFVSERMLALDGKRIKI 219 (232)
T ss_dssp -CB--C-TTS-------SBBSCCCCHHH-HHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred -CC--C-CCC-------cEEEcccCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEE
Confidence 10 0 000 11222233556 5888999999999999999999999888776544
No 15
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.81 E-value=9.2e-20 Score=188.87 Aligned_cols=200 Identities=15% Similarity=0.078 Sum_probs=155.8
Q ss_pred CCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCC-
Q 002099 742 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK- 820 (967)
Q Consensus 742 ~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~- 820 (967)
++++.+++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++..+..+++|++|||.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4677799999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccH----HHHHHHHHhccccccccC
Q 002099 821 PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTM----QDMRALIAERSKMTTCLR 896 (967)
Q Consensus 821 ~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~----~~l~~l~~~~~~~~~~~~ 896 (967)
|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+.. +++...+...... .
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~Rl~~~L~~l~~~----~ 155 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVT--SEKVGNLAFLDVTGRIAQTLLNLAKQ----P 155 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHH--HHHHHHHHHSCHHHHHHHHHHHHTTS----T
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHH--HHHHHHHhhCCHHHHHHHHHHHHHHh----c
Confidence 89999999999999999999999999999999999999998888762 122222222 2232222111110 0
Q ss_pred CeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 897 GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 897 ~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
+. .. ... . +...-++++ |++-.|++|++++|.+++|++.|++..+.+++.+
T Consensus 156 ~~-~~--~~~-~------~~~~~t~~~-iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 206 (210)
T 3ryp_A 156 DA-MT--HPD-G------MQIKITRQE-IGQIVGCSRETVGRILKMLEDQNLISAHGKTIVV 206 (210)
T ss_dssp TC-EE--ETT-E------EEEECCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred Cc-CC--CCC-c------eEeccCHHH-HHHHhCCcHHHHHHHHHHHHHCCcEEeCCCEEEE
Confidence 11 00 000 1 111233556 5888999999999999999999999988777654
No 16
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.80 E-value=1.9e-19 Score=173.80 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=119.9
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeE---eeeccCCCee
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSL---HPVFTHGSNL 811 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~---~~~l~~G~~f 811 (967)
.++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.. +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 4689999999999999999999999999999999999999999999999999999999888888887 8899999999
Q ss_pred chhhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 812 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 812 Ge~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
||.+++.+.++.++++|.++|+++.||+++|.++++++|.+...+++.+...+++
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988875
No 17
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.80 E-value=1.6e-19 Score=186.67 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=153.0
Q ss_pred CChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCC----cc
Q 002099 747 LPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK----PY 822 (967)
Q Consensus 747 l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~----~~ 822 (967)
|++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++..+..+++|++|||.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 68899999999999999999999999999999999999999999999989999999999999999999999988 89
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhc-cccccccCCeEEE
Q 002099 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMTTCLRGEIIE 901 (967)
Q Consensus 823 ~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~-~~~~~~~~~~~i~ 901 (967)
.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+...+..+-+... ..+... .+.. .
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~--~~~~~~l~~~~~~~Rl~~~L~~l~~~-~~~~-~ 156 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKT--TRKVGDLAFLDVTGRVARTLLDLCQQ-PDAM-T 156 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHTTS-TTCE-E
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHHh-cCCC-C
Confidence 999999999999999999999999999999999999998888762 2233333222222211000 011111 1110 0
Q ss_pred eecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 902 IPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 902 ~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.. +.+...-++++ |++-.|++|+++||.++++++.|++..+.+++.+
T Consensus 157 --~~-------~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 203 (207)
T 2oz6_A 157 --HP-------DGMQIKITRQE-IGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVV 203 (207)
T ss_dssp --ET-------TEEEEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred --CC-------CceecccCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 00 01112233556 5888999999999999999999999887776543
No 18
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.79 E-value=6.7e-20 Score=191.51 Aligned_cols=202 Identities=14% Similarity=0.079 Sum_probs=159.3
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
+.+++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++ .+++|++..+..+++|++|||
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence 467899999999999999999999999999999999999999999999999999995 777899999999999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccc
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~ 894 (967)
|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+...+..+-+.. .+..+
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~Rl~~--~L~~l 150 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNS--LTIINGLVFKDARLRLAE--FLVQA 150 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHH--HHHHHHHHTHHHHHHHHH--HHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCHHHHHHH--HHHHH
Confidence 88999999999999999999999999999999999999998888762 233344433443321101 01111
Q ss_pred cC--CeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCc-ccceee
Q 002099 895 LR--GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPP-LETFYV 958 (967)
Q Consensus 895 ~~--~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~-~~~~~~ 958 (967)
.. |.. .+. + ..+...-++++ +++-.|++|+++||.++++++.|++..+ .+++.+
T Consensus 151 ~~~~g~~----~~~-~----~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i 207 (220)
T 2fmy_A 151 AMDTGLK----VPQ-G----IKLELGLNTEE-IALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLL 207 (220)
T ss_dssp HHHHCEE----ETT-E----EEEECSSCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEE
T ss_pred HHHhCCC----CCC-c----EEEeccCCHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEE
Confidence 10 110 010 0 11223334656 5888999999999999999999999886 775543
No 19
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.79 E-value=2.4e-19 Score=192.47 Aligned_cols=198 Identities=14% Similarity=0.073 Sum_probs=153.9
Q ss_pred CCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCC-cc
Q 002099 744 LRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK-PY 822 (967)
Q Consensus 744 F~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~-~~ 822 (967)
...+++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++|||.+++.+. |+
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~ 133 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 133 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBC
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCC
Confidence 36699999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccH----HHHHHHHHhccccccccCCe
Q 002099 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTM----QDMRALIAERSKMTTCLRGE 898 (967)
Q Consensus 823 ~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~----~~l~~l~~~~~~~~~~~~~~ 898 (967)
.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+.. +++...+.. .... .+.
T Consensus 134 ~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~--~~~~~~l~~~~~~~Rla~~Ll~---l~~~-~~~ 207 (260)
T 3kcc_A 134 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVT--SEKVGNLAFLLVTGRIAQTLLN---LAKQ-PDA 207 (260)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHH---HHTS-TTC
T ss_pred ceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHH---HHHh-cCC
Confidence 999999999999999999999999999999999999998888762 223232222 222222211 1111 011
Q ss_pred EEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 899 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 899 ~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.. ... .+ ....++++ |++-.|++|+++||.+++|++.|++..+.+++.+
T Consensus 208 -~~--~~~-~~------~l~lt~~~-lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 256 (260)
T 3kcc_A 208 -MT--HPD-GM------QIKITRQE-IGQIVGCSRETVGRILKMLEDQNLISAHGKTIVV 256 (260)
T ss_dssp -EE--ETT-EE------EEECCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred -CC--CCC-ce------eecCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 00 000 11 11223556 5888999999999999999999999988777654
No 20
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.78 E-value=1.6e-18 Score=168.78 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=126.6
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+.+.++.+.+++|++|+++||+++++|+|.+|.|+++..+.+|++..+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 56899999999999999999999999999999999999999999999999999999999989999989999999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
+++.+.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++..
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~ 135 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRK 135 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888887774
No 21
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.7e-19 Score=188.22 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=166.9
Q ss_pred hhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 734 ~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
..++++++|+|+++++++++.+.+.++.+.+++|++|+++||+++++|+|.+|.|+++.. |+. +..+++|++|||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~---~~~--~~~~~~g~~fGe 79 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN---DNK--VNSSGPGSSFGE 79 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEEST---TSC--CEEECTTCEECH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEEC---CEE--EEecCCCCeeeh
Confidence 467899999999999999999999999999999999999999999999999999999862 333 368999999999
Q ss_pred hhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhcccccc
Q 002099 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~ 893 (967)
.+++.+.|+.++++|.++|+++.||+++|.+++.++|.....++..+..++. .+..++...+..+. .......
T Consensus 80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~f~~l~~~~l~~l~-~~~~~~~ 152 (246)
T 3of1_A 80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMP------VLKSLTTYDRAKLA-DALDTKI 152 (246)
T ss_dssp HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCG------GGTTCCHHHHHHHH-HTCEEEE
T ss_pred hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhCh------hhhcCCHHHHHHHH-HhhheEE
Confidence 9999999999999999999999999999999999999988888777766554 56788889988888 8888899
Q ss_pred ccCCeEEEeecCcee---EEEeeeeecccccc---------ccccCCccccCCCCCcccccccccCCCCCc
Q 002099 894 CLRGEIIEIPYHCIG---FLLEGFIKTHGLQE---------ELITPPAALIPSQGNLSFRSAETSGNLRPP 952 (967)
Q Consensus 894 ~~~~~~i~~~~~~~~---iLl~G~v~~~~~~e---------eli~~~~~l~~~~~n~~~~~~~~~~~~~~~ 952 (967)
|.+|+.+..+.+... ++.+|.++-....+ +++|..+.+.....+-+.+..++.-+..++
T Consensus 153 ~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~ 223 (246)
T 3of1_A 153 YQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLG 223 (246)
T ss_dssp ECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEE
T ss_pred eCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEe
Confidence 999999987654433 78889887543221 333433334433334444445444444333
No 22
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.78 E-value=2.2e-19 Score=187.88 Aligned_cols=200 Identities=12% Similarity=0.046 Sum_probs=156.6
Q ss_pred HhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhh
Q 002099 737 LISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 816 (967)
Q Consensus 737 ~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~l 816 (967)
+++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++ .+.+|++..+..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence 3678999999999999999999999999999999999999999999999999997 77789999899999999999
Q ss_pred hcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccccC
Q 002099 817 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR 896 (967)
Q Consensus 817 l~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 896 (967)
.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+...+..+-+... +..+..
T Consensus 76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~--~~~~~~l~~~~~~~Rl~~~--L~~l~~ 148 (222)
T 1ft9_A 76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSC--MRTIEDLMFHDIKQRIAGF--FIDHAN 148 (222)
T ss_dssp ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHH--HHHHHHHHTHHHHHHHHHH--HHHTCB
T ss_pred ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHH--HHHHHH
Confidence 788999999999999999999999999999999999999999888762 2333444334433311011 111110
Q ss_pred CeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccce
Q 002099 897 GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETF 956 (967)
Q Consensus 897 ~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~ 956 (967)
... .+.+. + ..+....++++ |++-.|++|+++||.++++++.|++..+.+++
T Consensus 149 ~~~--~~~~~-~----~~~~~~~t~~~-lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i 200 (222)
T 1ft9_A 149 TTG--RQTQG-G----VIVSVDFTVEE-IANLIGSSRQTTSTALNSLIKEGYISRQGRGH 200 (222)
T ss_dssp CCC--SCC---C----CCCEECCCHHH-HHHHHCSCHHHHHHHHHHHHHTTSSEECSTTC
T ss_pred HhC--CCCCC-c----EEEeccCCHHH-HHHHhCCcHHHHHHHHHHHHHCCcEEEcCCce
Confidence 000 00000 0 01222334656 58889999999999999999999999988884
No 23
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.78 E-value=5.5e-18 Score=172.17 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=126.2
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+...++.+.+++|++|+++||+++++|+|.+|.|+++..+++|++..+..+++|++|||.
T Consensus 38 ~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~ 117 (187)
T 3gyd_A 38 LEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEM 117 (187)
T ss_dssp HHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHH
T ss_pred HHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
+++.+.|+.++++|.++|+++.||+++|.++++++|.+...+++.+...+++
T Consensus 118 ~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 169 (187)
T 3gyd_A 118 SMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTA 169 (187)
T ss_dssp HHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999777776664
No 24
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.77 E-value=2.6e-18 Score=168.27 Aligned_cols=133 Identities=16% Similarity=0.237 Sum_probs=121.7
Q ss_pred hhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 734 ~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
..++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++..+..+++|++||+
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~ 89 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 89 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESG
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeecc
Confidence 45789999999999999999999999999999999999999999999999999999999888898888889999999999
Q ss_pred hhhhcCCc-ceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 814 YEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 814 ~~ll~~~~-~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
.+++.+.+ +.++++|.++|+++.||+++|.++++++|.+...+++.+..++..
T Consensus 90 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~ 143 (154)
T 2z69_A 90 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ 143 (154)
T ss_dssp GGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999999888777764
No 25
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.77 E-value=6.3e-19 Score=188.04 Aligned_cols=203 Identities=10% Similarity=-0.017 Sum_probs=159.6
Q ss_pred HhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhh
Q 002099 737 LISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 816 (967)
Q Consensus 737 ~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~l 816 (967)
++.+...+..+++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+++|++||| +
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 34444445899999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred hcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHH----HHHHHHHhccccc
Q 002099 817 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQ----DMRALIAERSKMT 892 (967)
Q Consensus 817 l~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~----~l~~l~~~~~~~~ 892 (967)
+.+. +.++++|.++|+++.||+++|.+++.++|.+...+++.+..++... .+....+... ++..++.....
T Consensus 88 l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~--~~~~~~~~~~~~~~Rl~~~L~~l~~-- 162 (250)
T 3e6c_C 88 YPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYY--ARQVAEMNTYNPTIRILRLFYELCS-- 162 (250)
T ss_dssp SCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHH--HHHHHHHTTSCHHHHHHHHHHHHHH--
T ss_pred cCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHH--
Confidence 7888 9999999999999999999999999999999999999999988862 2333333222 22222211111
Q ss_pred cccCCeEEEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 893 TCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 893 ~~~~~~~i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
.+ +. +.+. + ..+....++++ |++-.|++|++++|.++++++.|++..+.+++.+
T Consensus 163 ~~--~~----~~~~-~----~~i~~~~t~~~-iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i 216 (250)
T 3e6c_C 163 SQ--GK----RVGD-T----YEITMPLSQKS-IGEITGVHHVTVSRVLASLKRENILDKKKNKIIV 216 (250)
T ss_dssp HH--CE----EETT-E----EEEECCCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred Hh--CC----CCCC-C----cEecCCCCHHH-HHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEE
Confidence 01 10 0000 0 11222333556 5888999999999999999999999998887654
No 26
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.76 E-value=5.7e-18 Score=185.74 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=152.6
Q ss_pred hhhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 734 ~~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
..++++++|+|+++++++++.+.+.++.+.|++|++|+++||.++++|+|.+|.|+++. +| ..+..+++|++|||
T Consensus 37 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~g--~~~~~~~~G~~fGe 111 (299)
T 3shr_A 37 IKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGPGKVFGE 111 (299)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---TT--EEEEEECTTCEESC
T ss_pred HHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---CC--EEEEEeCCCCeeeH
Confidence 35689999999999999999999999999999999999999999999999999999965 23 35578999999999
Q ss_pred hhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhcccccc
Q 002099 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~ 893 (967)
.+++.+.||.++++|.++|+++.|++++|.+++.++|......+..+..+.. .+..++.+.+..+. ...+...
T Consensus 112 ~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~------~f~~l~~~~l~~l~-~~~~~~~ 184 (299)
T 3shr_A 112 LAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVP------TFQSLPEEILSKLA-DVLEETH 184 (299)
T ss_dssp SGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSH------HHHHSCHHHHHHHT-TTCEEEE
T ss_pred hHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCH------HhhhCCHHHHHHHH-HhccEEE
Confidence 9999999999999999999999999999999999999888777766665554 67889999998887 8888899
Q ss_pred ccCCeEEEeecCcee---EEEeeeeecc
Q 002099 894 CLRGEIIEIPYHCIG---FLLEGFIKTH 918 (967)
Q Consensus 894 ~~~~~~i~~~~~~~~---iLl~G~v~~~ 918 (967)
|.+|+.+..+.+... ++.+|.++-.
T Consensus 185 ~~~g~~I~~~G~~~~~~yiI~~G~v~~~ 212 (299)
T 3shr_A 185 YENGEYIIRQGARGDTFFIISKGKVNVT 212 (299)
T ss_dssp ECTTCEEECTTCEECEEEEEEESEEEEE
T ss_pred ECCCCEEEeCCCCCCEEEEEEeeEEEEE
Confidence 999999987654433 8889988764
No 27
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.75 E-value=1.7e-18 Score=198.41 Aligned_cols=176 Identities=11% Similarity=0.140 Sum_probs=156.3
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|++|++++++.+.+.++.+.|++|++|+++||.++++|+|.+|.|+++. +.+|+...+..+++|++|||.
T Consensus 144 ~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~fGe~ 222 (416)
T 3tnp_B 144 QEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGEL 222 (416)
T ss_dssp HHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCEECGG
T ss_pred HHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCEEeeH
Confidence 5688999999999999999999999999999999999999999999999999999998 567888888899999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccc
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~ 894 (967)
+++.+.||.++++|.++|+++.|++++|.+++.++|.....++..+..++. .+..++...+..+. .......|
T Consensus 223 all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~------lf~~Ls~~el~~L~-~~l~~~~~ 295 (416)
T 3tnp_B 223 ALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLP------FLKSLEVSERLKVV-DVIGTKVY 295 (416)
T ss_dssp GGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCG------GGTTCCHHHHHHHH-HHCEEEEE
T ss_pred HHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhch------HhhcCCHHHHHHHH-hhceEEEE
Confidence 999999999999999999999999999999999999887766655555544 56788888888888 88888899
Q ss_pred cCCeEEEeecCcee---EEEeeeeecc
Q 002099 895 LRGEIIEIPYHCIG---FLLEGFIKTH 918 (967)
Q Consensus 895 ~~~~~i~~~~~~~~---iLl~G~v~~~ 918 (967)
.+|+.+..+..... ++.+|.++-.
T Consensus 296 ~~Ge~I~~eGd~~~~~yiI~sG~v~v~ 322 (416)
T 3tnp_B 296 NDGEQIIAQGDLADSFFIVESGEVKIT 322 (416)
T ss_dssp CTTCEEECTTSCCCEEEEEEEEEEEEE
T ss_pred CCCCEEEeCCCcCCEEEEEEeCEEEEE
Confidence 99999987754333 8889988754
No 28
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.74 E-value=1.1e-17 Score=182.72 Aligned_cols=172 Identities=16% Similarity=0.200 Sum_probs=152.8
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+.+.++.+.+++|++|+++||+++++|+|.+|.|+++. +| ..+..+++|++|||.
T Consensus 38 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~fGe~ 112 (291)
T 2qcs_B 38 AKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSFGEL 112 (291)
T ss_dssp HHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEECGG
T ss_pred HHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCccchH
Confidence 5678999999999999999999999999999999999999999999999999999987 33 345789999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccc
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~ 894 (967)
+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...++..+..++. .+..++...+..+. ...+...|
T Consensus 113 ~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~------lf~~l~~~~~~~l~-~~~~~~~~ 185 (291)
T 2qcs_B 113 ALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS------ILESLDKWERLTVA-DALEPVQF 185 (291)
T ss_dssp GGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCG------GGTTCCHHHHHHHH-HHCEEEEE
T ss_pred HHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhch------HhhhCCHHHHHHHH-hhcEEEEE
Confidence 999999999999999999999999999999999999999888887776665 56788888888777 77888899
Q ss_pred cCCeEEEeecCce---eEEEeeeeecc
Q 002099 895 LRGEIIEIPYHCI---GFLLEGFIKTH 918 (967)
Q Consensus 895 ~~~~~i~~~~~~~---~iLl~G~v~~~ 918 (967)
.+|+.+..+.+.. .++.+|+++-.
T Consensus 186 ~~g~~i~~~g~~~~~~y~i~~G~v~~~ 212 (291)
T 2qcs_B 186 EDGQKIVVQGEPGDEFFIILEGSAAVL 212 (291)
T ss_dssp CTTCEEECTTSCCCEEEEEEEEEEEEE
T ss_pred CCCCEEEeCCccCCEEEEEEeCEEEEE
Confidence 9999998765443 38889998764
No 29
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.74 E-value=2e-18 Score=170.83 Aligned_cols=124 Identities=10% Similarity=0.153 Sum_probs=116.3
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+...++.+.|++|++|+++||+++++|+|.+|.|+++. +.+|++..+..+++|++|||.
T Consensus 37 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~fGe~ 115 (161)
T 3idb_B 37 QEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGEL 115 (161)
T ss_dssp HHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEECGG
T ss_pred HHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEechH
Confidence 5689999999999999999999999999999999999999999999999999999999 778888888999999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQ 859 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~ 859 (967)
+++.+.++.++++|.++|+++.|++++|.++++++|.+++.++.+
T Consensus 116 ~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 160 (161)
T 3idb_B 116 ALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYES 160 (161)
T ss_dssp GGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC---
T ss_pred HHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHhc
Confidence 999999999999999999999999999999999999988776654
No 30
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=193.14 Aligned_cols=205 Identities=15% Similarity=0.183 Sum_probs=165.8
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|++|++++++.+.++++.+.|++|++|+++||+++++|+|.+|.|+++. +|+ .+..+++|++|||.
T Consensus 129 ~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~--~v~~l~~G~~fGe~ 203 (381)
T 4din_B 129 AKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGE--WVTNISEGGSFGEL 203 (381)
T ss_dssp HHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTE--EEEEEESSCCBCGG
T ss_pred HHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCe--EeeeCCCCCEEEch
Confidence 4678999999999999999999999999999999999999999999999999999996 233 45689999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccc
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~ 894 (967)
+++.+.||.++++|.++|+++.|++++|++++.++|.....++..+..++. .+..++...+..+. .......|
T Consensus 204 all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~------~f~~Ls~~el~~l~-~~~~~~~~ 276 (381)
T 4din_B 204 ALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS------ILESLEKWERLTVA-DALEPVQF 276 (381)
T ss_dssp GGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCS------TTTTCCTTHHHHHH-TTCBCCCB
T ss_pred HHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhH------HHHhccHHHHHHHH-HhhhhccC
Confidence 999999999999999999999999999999999999999988887776665 56678888888877 77888899
Q ss_pred cCCeEEEeecCcee---EEEeeeeecccc----cc----------ccccCCccccCCCCCcccccccccCCCCC
Q 002099 895 LRGEIIEIPYHCIG---FLLEGFIKTHGL----QE----------ELITPPAALIPSQGNLSFRSAETSGNLRP 951 (967)
Q Consensus 895 ~~~~~i~~~~~~~~---iLl~G~v~~~~~----~e----------eli~~~~~l~~~~~n~~~~~~~~~~~~~~ 951 (967)
.+|+.+..+..... ++.+|.++-... .+ +.+|..+.+......-+....++.-+..+
T Consensus 277 ~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i 350 (381)
T 4din_B 277 EDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKL 350 (381)
T ss_dssp CSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEE
T ss_pred CCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEE
Confidence 99998866654333 888898875321 11 33455455554444444555555444433
No 31
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.73 E-value=3.6e-18 Score=181.28 Aligned_cols=194 Identities=11% Similarity=0.117 Sum_probs=151.4
Q ss_pred hhhhHHhhhccE---EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCc--ce
Q 002099 749 PSVREPLELSTK---EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP--YM 823 (967)
Q Consensus 749 ~~~l~~l~~~~~---~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~--~~ 823 (967)
++.++.+..... .+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+++|++||+.+++.+.| +.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 778888988888 9999999999999999999999999999999999999999999999999999999999887 45
Q ss_pred eEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhcc----HHHHHHHHHhccccccccCCeE
Q 002099 824 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLT----MQDMRALIAERSKMTTCLRGEI 899 (967)
Q Consensus 824 atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~----~~~l~~l~~~~~~~~~~~~~~~ 899 (967)
++++|.++|+++.||+++|.++++++|.+...+++.+..++... .+....+. .+++..++...... + |
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~--~~~~~~l~~~~~~~Rla~~L~~l~~~--~--g-- 181 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQT--EMMIETLAHRDMGSRLVSFLLILCRD--F--G-- 181 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HHHHHHHHCSSHHHHHHHHHHHHHHH--H--E--
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHHH--h--C--
Confidence 99999999999999999999999999999999999988887752 12222222 22233222111110 0 0
Q ss_pred EEeecCceeEEEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 900 IEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 900 i~~~~~~~~iLl~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
. +... + ..+....++++ |++-.|++|++++|.+++|++.|++..+.+++.+
T Consensus 182 ~--~~~~-~----~~i~~~lt~~~-lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 182 V--PCAD-G----ITIDLKLSHQA-IAEAIGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp E--ECSS-S----EEECSCCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred C--CCCC-C----eEEeccCCHHH-HHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 0 0110 0 01222233556 5889999999999999999999999988776654
No 32
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.72 E-value=7.9e-18 Score=178.09 Aligned_cols=200 Identities=11% Similarity=0.058 Sum_probs=150.3
Q ss_pred CCCChhhhHHhhh--ccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcc
Q 002099 745 RELPPSVREPLEL--STKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (967)
Q Consensus 745 ~~l~~~~l~~l~~--~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~ 822 (967)
+++++++++.+.. ..+.+.|++|++|+++||+++++|+|.+|.|+++..+++|++.++..+ +|++|||.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 4688999999885 489999999999999999999999999999999999999999988888 9999999999998864
Q ss_pred --eeEEEEc-ceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhc-cccccccCCe
Q 002099 823 --MSDMVTD-SVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMTTCLRGE 898 (967)
Q Consensus 823 --~atv~A~-~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~-~~~~~~~~~~ 898 (967)
.+++.|. ++|+++.||+++|.++++++|.+...+++.+..++... .+....+...+..+-+... ..+.. ..|.
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~Rla~~L~~l~~-~~g~ 157 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYS--LAKFNDFSINGKLGSICSQLLILTY-VYGK 157 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHHTTHHHHHHHHHHHHHHH-HHEE
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHHHHccCHHHHHHHHHHHHHH-HhCC
Confidence 6777777 59999999999999999999999999999999888762 2333333333333211000 00000 0010
Q ss_pred EEEeecCceeEEEeeeeec-cccccccccCCccccC-CCCCcccccccccCCCCCcccceee
Q 002099 899 IIEIPYHCIGFLLEGFIKT-HGLQEELITPPAALIP-SQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 899 ~i~~~~~~~~iLl~G~v~~-~~~~eeli~~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
+... +. .+.. .-++++ +++-.|++| +++||.++++++.|++..+.+++.+
T Consensus 158 ----~~~~-~~----~i~~~~~t~~~-lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I 209 (238)
T 2bgc_A 158 ----ETPD-GI----KITLDNLTMQE-LGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYV 209 (238)
T ss_dssp ----EETT-EE----EECCSCCCHHH-HHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred ----CCCC-ce----EEEeccCCHHH-HHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 0000 00 1222 333556 488899999 7999999999999999888776544
No 33
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.71 E-value=2.3e-17 Score=158.42 Aligned_cols=125 Identities=16% Similarity=0.277 Sum_probs=115.9
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+ . ..+++|++||+.
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~---~~~~~G~~~G~~ 82 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P---VELGPGAFFGEM 82 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----C---EEECTTCEECHH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----c---ceECCCCEeeeh
Confidence 467899999999999999999999999999999999999999999999999999998654 1 368999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
+++.+.++.++++|.++|+++.||+++|.++++++|.+...+++.+..++.+
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~ 134 (138)
T 1vp6_A 83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 134 (138)
T ss_dssp HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC-
T ss_pred HhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999998888777653
No 34
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.70 E-value=5.8e-17 Score=155.94 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=103.1
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+...++.+.|++|++|+++||+++++|+|.+|.|++.. +|+ .+..+++|++|||.
T Consensus 22 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~--~~~~~~~G~~fGe~ 96 (139)
T 3ocp_A 22 KEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGV--KLCTMGPGKVFGEL 96 (139)
T ss_dssp HHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTE--EEEEECTTCEESCH
T ss_pred HHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCE--EEEEeCCCCEeccH
Confidence 5789999999999999999999999999999999999999999999999999999965 333 55789999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 856 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l 856 (967)
+++.+.++.++++|.++|+++.|++++|.++++++|.++++.
T Consensus 97 ~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 97 AILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp HHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred HHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 999999999999999999999999999999999999988654
No 35
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.69 E-value=1.1e-16 Score=157.77 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=112.8
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+...++.+.+++|++|+++||+++++|+|.+|.|+++.. ......+++|++|||.
T Consensus 26 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-----~~~~~~~~~G~~fG~~ 100 (160)
T 4f8a_A 26 RKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD-----DEVVAILGKGDVFGDV 100 (160)
T ss_dssp HHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET-----TEEEEEEETTCEEECC
T ss_pred HHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC-----CEEEEEecCCCEeCcH
Confidence 46899999999999999999999999999999999999999999999999999999872 2366789999999999
Q ss_pred hhhcC--CcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHH
Q 002099 815 EVLIG--KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 860 (967)
Q Consensus 815 ~ll~~--~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~ 860 (967)
+++.+ .++.++++|.++|+++.||+++|.++++++|.+...+++.+
T Consensus 101 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 101 FWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp TTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 79999999999999999999999999999999998877665
No 36
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.68 E-value=1.9e-16 Score=176.34 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=124.3
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++ .+..+++|++|||.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence 58999999999999999999999999999999999999999999999999999999999988887 67799999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~ 865 (967)
+++.+.|+.++++|.++|+++.|++++|.+++ ++|.+...+++.+..++.
T Consensus 91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999988887
No 37
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.68 E-value=1.1e-16 Score=156.92 Aligned_cols=118 Identities=16% Similarity=0.256 Sum_probs=107.5
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
.++++++|+|+++++++++.+...++.+.|++|++|+++||+++++|+|.+|.|+++. +|+ .+..+++|++|||.
T Consensus 37 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~fGe~ 111 (154)
T 3pna_A 37 AKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSFGEL 111 (154)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCEECCH
T ss_pred HHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCEeeeh
Confidence 4689999999999999999999999999999999999999999999999999999997 333 45689999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 857 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~ 857 (967)
+++.+.++.++++|.++|+++.|++++|.++++++|.+++.+|
T Consensus 112 ~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~~ 154 (154)
T 3pna_A 112 ALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 154 (154)
T ss_dssp HHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC----
T ss_pred HhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhcC
Confidence 9999999999999999999999999999999999998887654
No 38
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.67 E-value=2e-17 Score=158.71 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=108.8
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEee--eccCCCeec
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHP--VFTHGSNLG 812 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~--~l~~G~~fG 812 (967)
.++++++|+|+++++++++.+...++.+.+++|++|+++||+++++|+|.+|.|++. .+++|++..+. .+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fG 83 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCG 83 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSS
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEec
Confidence 467899999999999999999999999999999999999999999999999999965 56678777666 899999999
Q ss_pred hhhh---hcCCc------ceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHH
Q 002099 813 LYEV---LIGKP------YMSDMVTDSVVLCFFIESDKILSILRSDPAVED 854 (967)
Q Consensus 813 e~~l---l~~~~------~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~ 854 (967)
|.++ +.+.+ +.++++|.++|+++.|++++|.++++++|.++.
T Consensus 84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 9995 78774 579999999999999999999999999998764
No 39
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.67 E-value=3.1e-16 Score=171.90 Aligned_cols=132 Identities=15% Similarity=0.263 Sum_probs=126.1
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEee-CCCceeEeeeccCCCeech
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKS-IRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~-~~g~~~~~~~l~~G~~fGe 813 (967)
.+++++.|+|.+++++++..+...++.+.|++|++|+++||+++++|+|.+|.|+++..+ .+|++..+..+++|++|||
T Consensus 156 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe 235 (299)
T 3shr_A 156 MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGE 235 (299)
T ss_dssp HHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECG
T ss_pred HHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeCh
Confidence 457888999999999999999999999999999999999999999999999999999987 6888888899999999999
Q ss_pred hhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
.+++.+.||.++++|.++|+++.|++++|.+++.++|.+..++++.+..++..
T Consensus 236 ~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~ 288 (299)
T 3shr_A 236 KALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKY 288 (299)
T ss_dssp GGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999998886
No 40
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.67 E-value=6e-17 Score=165.64 Aligned_cols=176 Identities=16% Similarity=0.107 Sum_probs=133.5
Q ss_pred EEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEcHHH
Q 002099 762 IMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDK 841 (967)
Q Consensus 762 ~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~~~~ 841 (967)
+.|++|++|+++||+++++|+|.+|.|+++..+++|++..+..+++|++||| +++.+.|+.++++|.++|+++.||+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5789999999999999999999999999999998999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhc-cccccccCCeEEEeecCceeEEEeeeeecccc
Q 002099 842 ILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGL 920 (967)
Q Consensus 842 f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~-~~~~~~~~~~~i~~~~~~~~iLl~G~v~~~~~ 920 (967)
|. |.+...+++.+..++... .+....+...+..+-+... ..... ..|..- +. |.+...-+
T Consensus 81 ~~------p~~~~~~~~~l~~~l~~~--~~~~~~l~~~~~~~Rl~~~L~~l~~-~~~~~~--~~--------~~~~~~~t 141 (195)
T 3b02_A 81 MD------HEALHRVARNLARQMRRV--QAYEAHLQTGELRARIARYLLFLAD-TPLSAR--DR--------QGIYVTVS 141 (195)
T ss_dssp CC------HHHHHHHHHHHHHHHHHH--HHHHHHHTSSCHHHHHHHHHHHHTT-STTEEE--ET--------TEEEEECC
T ss_pred cC------HHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHH-HcCCCC--CC--------CeeeccCC
Confidence 98 999999999988888762 2333333222222211000 01110 011110 01 11222233
Q ss_pred ccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 921 QEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 921 ~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
+++ +++-.|++|+++||.++++++.|++..+.+++.+
T Consensus 142 ~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 178 (195)
T 3b02_A 142 HEE-IADATASIRESVSKVLADLRREGLIATAYRRVYL 178 (195)
T ss_dssp HHH-HHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEE
T ss_pred HHH-HHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 556 5888999999999999999999999888777544
No 41
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.60 E-value=1.8e-15 Score=176.96 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=119.6
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCc--eeEeeeccCCCeec
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNK--HSLHPVFTHGSNLG 812 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~--~~~~~~l~~G~~fG 812 (967)
.+.++++|+|+++++++++.+...++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|+ +..+..+++|++||
T Consensus 41 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fG 120 (469)
T 1o7f_A 41 FTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFG 120 (469)
T ss_dssp HHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEEC
T ss_pred HHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcc
Confidence 4678999999999999999999999999999999999999999999999999999999888885 47778999999999
Q ss_pred hhhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHH
Q 002099 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (967)
Q Consensus 813 e~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~ 865 (967)
|.+ +.+.|+.++++|.++|+++.||+++|.++++++|.+...+++.+..++.
T Consensus 121 e~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~l~ 172 (469)
T 1o7f_A 121 ESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVME 172 (469)
T ss_dssp GGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSCSC
T ss_pred hhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999988877665544443
No 42
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=144.83 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=103.5
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEec-CCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKL-SGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~-~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
.++++++|+|..+++++++.+...++.+.+. +|++|+++||+++++|+|.+|.|+++. .+|+. ..+++|++|||
T Consensus 15 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~~fG~ 89 (134)
T 2d93_A 15 LEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---ENLFMGNSFGI 89 (134)
T ss_dssp HHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EEECTTCEESC
T ss_pred HHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCCccCh
Confidence 4689999999999999999999999999999 999999999999999999999999985 45555 35889999999
Q ss_pred hhhhcCCcceeEE-EEcceEEEEEEcHHHHHHHHhhCcH
Q 002099 814 YEVLIGKPYMSDM-VTDSVVLCFFIESDKILSILRSDPA 851 (967)
Q Consensus 814 ~~ll~~~~~~atv-~A~~~~~l~~i~~~~f~~ll~~~p~ 851 (967)
.+++.+.++.+++ +|.++|+++.|++++|.+++++++.
T Consensus 90 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 90 TPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp CSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred hHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 9999999999999 9999999999999999999988764
No 43
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.59 E-value=1.3e-14 Score=158.28 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=115.8
Q ss_pred hHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCC-ceeEeeeccCCCeechh
Q 002099 736 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRN-KHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 736 ~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g-~~~~~~~l~~G~~fGe~ 814 (967)
.+++++++|..++++++..+...++.+.+.+|++|+++||+++++|+|.+|.|+++....+| +...+..+++|++|||.
T Consensus 157 ~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~ 236 (291)
T 2qcs_B 157 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI 236 (291)
T ss_dssp HHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSG
T ss_pred HHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHH
Confidence 56788999999999999999999999999999999999999999999999999999877555 45677899999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSA 861 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~ 861 (967)
+++.+.||.++++|.++|+++.|++++|.+++.++|++..++++...
T Consensus 237 ~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 237 ALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp GGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred HHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776665543
No 44
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.59 E-value=6e-16 Score=159.13 Aligned_cols=178 Identities=13% Similarity=0.115 Sum_probs=133.1
Q ss_pred hhccEEEEecCCCeeecCCCCC--CeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEE
Q 002099 756 ELSTKEIMKLSGVTLYREGSKP--SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 833 (967)
Q Consensus 756 ~~~~~~~~~~~ge~I~~eGe~~--~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~ 833 (967)
.+.++.+.|++|++|+++||++ +++|+|.+|.|+++..+++|++.++..++||++||+ +++.+.|+.++++|.++|+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~ 80 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR 80 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence 4567789999999999999999 999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccH----HHHHHHHHhccccccccCCeEEEeecCceeE
Q 002099 834 CFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTM----QDMRALIAERSKMTTCLRGEIIEIPYHCIGF 909 (967)
Q Consensus 834 l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~----~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~i 909 (967)
++.| +++|. |.+...+++.+..++... .+....+.. +++..++..... ..+. . +.+
T Consensus 81 v~~i-~~~~~------p~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~Rl~~~L~~l~~----~~~~--~-~~~---- 140 (202)
T 2zcw_A 81 LEPL-PENPD------PELLKDLAQHLSQGLAEA--YRRIERLATQRLKNRMAAALLELSE----TPLA--H-EEE---- 140 (202)
T ss_dssp EEEC-CSSCC------HHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHTT----STTE--E-EET----
T ss_pred EEEE-hHhcC------HHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHH----hcCC--C-CCC----
Confidence 9999 98886 999998888888877752 122222222 222222211110 0111 0 000
Q ss_pred EEeeeeeccccccccccCCccccCCCCCcccccccccCCCCCcccceee
Q 002099 910 LLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGNLRPPLETFYV 958 (967)
Q Consensus 910 Ll~G~v~~~~~~eeli~~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 958 (967)
+.+...-++++ |++-.|++|+++||.++++++.|++..+.+++.+
T Consensus 141 ---~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 185 (202)
T 2zcw_A 141 ---GKVVLKATHDE-LAAAVGSVRETVTKVIGELAREGYIRSGYGKIQL 185 (202)
T ss_dssp ---TEEEEECCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred ---cEEccCCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 11222333556 5888999999999999999999999887776654
No 45
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=6.9e-15 Score=168.31 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=112.0
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCC------CceeEeeeccCC
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR------NKHSLHPVFTHG 808 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~------g~~~~~~~l~~G 808 (967)
..+++++++|..++++++..+...++.+.|.+|++|+++||+++++|+|.+|.|+++..+.+ |++..+..+++|
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G 345 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG 345 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence 45789999999999999999999999999999999999999999999999999999987765 777888899999
Q ss_pred CeechhhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 809 SNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 809 ~~fGe~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
++|||.+++.+.||.++|+|.++|+++.|++++|.+++..+|++..+.++.+..++..
T Consensus 346 ~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~ 403 (416)
T 3tnp_B 346 QYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVA 403 (416)
T ss_dssp CEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----------
T ss_pred CEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888777777764
No 46
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.9e-15 Score=156.46 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=108.2
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechh
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~ 814 (967)
..+++++|+|+++++++++.+...++.+.|++|++|+++||+++++|+|.+|.|+++..+.+ .+..+++|++|||.
T Consensus 124 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~----~~~~l~~g~~fGe~ 199 (246)
T 3of1_A 124 DDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG----VINKLKDHDYFGEV 199 (246)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE----EEEEEETTCEECHH
T ss_pred HHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc----eEEEcCCCCcccHH
Confidence 46789999999999999999999999999999999999999999999999999999876532 55789999999999
Q ss_pred hhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHH
Q 002099 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVED 854 (967)
Q Consensus 815 ~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~ 854 (967)
+++.+.||.++++|.++|+++.|++++|.+++..+|++..
T Consensus 200 ~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 200 ALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred HHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 9999999999999999999999999999999999887654
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=164.26 Aligned_cols=130 Identities=12% Similarity=0.178 Sum_probs=118.3
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCc-eeEeeeccCCCeech
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNK-HSLHPVFTHGSNLGL 813 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~-~~~~~~l~~G~~fGe 813 (967)
..+++++++|..++++++..+...++.+.|.+|++|+++||.++++|+|.+|.|+++..+.+|+ ...+..+++|++|||
T Consensus 247 ~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe 326 (381)
T 4din_B 247 EEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGE 326 (381)
T ss_dssp HHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECT
T ss_pred HHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEech
Confidence 3578999999999999999999999999999999999999999999999999999998775554 556789999999999
Q ss_pred hhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHH
Q 002099 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIAL 864 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l 864 (967)
.+++.+.||.++++|.++|+++.|++++|.+++..+|++..+.+++....+
T Consensus 327 ~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 327 IALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp TGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred HHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877766655444
No 48
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.51 E-value=7.8e-14 Score=153.45 Aligned_cols=307 Identities=12% Similarity=0.127 Sum_probs=199.2
Q ss_pred hHHHHHHhHHHhhhhhhcCCHHHH----HHhhh--hHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccc
Q 002099 99 DLLLAVFLPALLFESSFAMEVHQI----KRCLV--QMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATD 172 (967)
Q Consensus 99 ~~~~~i~l~~llF~~g~~~~~~~l----~~~~~--~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Td 172 (967)
+++-...+.+++|..|+|+|.+.+ ++..+ .....|+.|+++|+++ +..+ +++...+.--+++.++||
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~--~~~~~~~~~gw~ip~ATd 133 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF--NYADPITREGWAIPAATD 133 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG--CCSSTTHHHHTSSSSCCC
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH--hcCChhhhhhhHHHHHHH
Confidence 567778899999999999998877 44333 3577899999998876 3334 455556778889999999
Q ss_pred HHHHHHHHhhcC--CCcchhhhhhhhhhHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002099 173 PVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLW 250 (967)
Q Consensus 173 p~av~~il~~l~--~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~ 250 (967)
.+..+.++..+| .|..++..+.+-+.+||..++++..++.+ ++.++..... . ++.+.+ .++
T Consensus 134 IAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~~~~~~~l~~---------~-~~~~~~---~~~ 196 (388)
T 1zcd_A 134 IAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----NDLSMASLGV---------A-AVAIAV---LAV 196 (388)
T ss_dssp HHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----CCCCHHHHHH---------H-HHHHHH---HHH
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----CCccHHHHHH---------H-HHHHHH---HHH
Confidence 999999999887 78899999999999999999999988853 3344332211 1 111111 122
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhhhhcccCChhHHHHHHHHHHHHHHHHHHHH-HHH
Q 002099 251 LGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI-FIL 329 (967)
Q Consensus 251 l~~~~~~~~~~~~l~l~~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Fv~ 329 (967)
+++..-.+.. ..+.+ ..++++.+ +..|++.++|.|++|+++....+...+ ..++..+.......+++.|+| |+.
T Consensus 197 l~r~~v~~~~-~y~~l--gl~~w~~~-~~sGvHatigg~l~Gl~ip~~~~~~~~-~~~~le~~l~p~v~~~ilPlFaFan 271 (388)
T 1zcd_A 197 LNLCGARRTG-VYILV--GVVLWTAV-LKSGVHATLAGVIVGFFIPLKEKHGRS-PAKRLEHVLHPWVAYLILPLFAFAN 271 (388)
T ss_dssp HHHTTCCCTH-HHHHH--HHHHHHHT-TTSHHHHHHHHHHHHHHSCCCGGGSSC-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHhcchhHH-HHHHH--HHHHHHHH-HHhCccHHHHHHHHHHhccCCCccCCC-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332211111 12222 23445555 889999999999999999753222112 234444445555567999999 999
Q ss_pred HhHHHhhhhcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhhHHHHhh-ccchhhHHH
Q 002099 330 SGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW-SGLRGAVAL 403 (967)
Q Consensus 330 ~G~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~R~l~v~~~~~~l~~~~-----~~~~~~~~~~l~~-~g~RG~v~l 403 (967)
.|+.++..... ...+ ...+.+.+..+++|+++++....+..+++ .+.+|++..-+++ +|.+|.+++
T Consensus 272 aGv~l~~~~~~-------~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL 343 (388)
T 1zcd_A 272 AGVSLQGVTLD-------GLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSI 343 (388)
T ss_dssp CCCCCSSSCCC-------THHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHH
T ss_pred cCeeecccchh-------hccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHH
Confidence 99998642211 0001 11224445568899999766665544443 3899999999888 699999999
Q ss_pred HHhhhhcccCCCCcccccccccchhhhhhhhhhhhhhccccchHHHHhh
Q 002099 404 SLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHL 452 (967)
Q Consensus 404 alal~v~~~~~~~~~~~~~~~~~i~~~~~~vvl~Tl~i~g~t~~~l~~~ 452 (967)
..+..--+... . .+...+...+++..++.+...|.++|+
T Consensus 344 ~Ia~laf~~~~---~-------~~~~~ak~~il~~s~~s~i~g~~~L~~ 382 (388)
T 1zcd_A 344 FIASLAFGSVD---P-------ELINWAKLGILVGSISSAVIGYSWLRV 382 (388)
T ss_dssp HHHHHHSTTSS---C-------SSHHHHHHHHHHHHHTTTSTTTGGGTT
T ss_pred HHHHHhccCCc---h-------hhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765332110 0 011122334555555666667777664
No 49
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.45 E-value=6.9e-15 Score=165.09 Aligned_cols=124 Identities=16% Similarity=0.288 Sum_probs=0.5
Q ss_pred hHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhh
Q 002099 736 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYE 815 (967)
Q Consensus 736 ~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ 815 (967)
+.+++.|+|+++++++++.+.+.++.+.++|||+|++|||+++++|+|.+|.|+++..+ ...+++|++|||.+
T Consensus 228 ~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe~~ 300 (355)
T 3beh_A 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMA 300 (355)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEeehH
Confidence 46888999999999999999999999999999999999999999999999999998765 14789999999999
Q ss_pred hhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 002099 816 VLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (967)
Q Consensus 816 ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~~ 866 (967)
++.+.|+.++++|.++|+++.+|+++|+++++++|++.+.+.+.+..++.+
T Consensus 301 ~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~ 351 (355)
T 3beh_A 301 LISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 351 (355)
T ss_dssp ---------------------------------------------------
T ss_pred HhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998888777764
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.44 E-value=3.6e-13 Score=171.52 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=106.8
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeC--CCceeEeeeccCCCeec
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI--RNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~--~g~~~~~~~l~~G~~fG 812 (967)
...|+++++|+++++.++..|+++++.+.+++|++||++||.++++|+|.+|.|.|+..+. ++....+..+++|+.||
T Consensus 41 ~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFG 120 (999)
T 4f7z_A 41 FTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFG 120 (999)
T ss_dssp HHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEEC
T ss_pred HHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchh
Confidence 3568999999999999999999999999999999999999999999999999999998654 34456677899999999
Q ss_pred hhhhhcCCcceeEEEEcceEEEEEEcHHHHHHHHhhCcHH
Q 002099 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 852 (967)
Q Consensus 813 e~~ll~~~~~~atv~A~~~~~l~~i~~~~f~~ll~~~p~~ 852 (967)
| +++.+.||++||+|.++|+++.|++++|+.+++++|+.
T Consensus 121 E-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 121 E-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp G-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred h-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 9 89999999999999999999999999999999876653
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.42 E-value=3.4e-13 Score=157.47 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=105.6
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEE-EEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKE-IMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~-~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
.++++++|+|+++++++++.+...+.. +.|++|++|+++||+++++|+|.+|.|+++..+ + ..+..+++|++|||
T Consensus 336 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~---~-~~~~~l~~G~~fGe 411 (469)
T 1o7f_A 336 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG---K-GVVCTLHEGDDFGK 411 (469)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETT---T-EEEEEEETTCEECG
T ss_pred HHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcC---C-eeEEEecCCCEEEE
Confidence 467899999999999999999999985 599999999999999999999999999998743 2 25678999999999
Q ss_pred hhhhcCCcceeEEEEcc-eEEEEEEcHHHHHHHHhhCcHHHHHHHHH
Q 002099 814 YEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSDPAVEDFLWQQ 859 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~-~~~l~~i~~~~f~~ll~~~p~~~~~l~~~ 859 (967)
.+++.+.|+.++++|.+ +|+++.|++++|.+++.++|.+..++...
T Consensus 412 ~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 412 LALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp GGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred ehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 99999999999999998 79999999999999999999988776543
No 52
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.31 E-value=3.4e-12 Score=154.14 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=106.0
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccE-EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTK-EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~-~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
.+.++++|+|+++++++++.+...+. .+.|++|++|+++||+++++|+|.+|.|+++..+ + .++..+++|++|||
T Consensus 31 ~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g---~-~il~~l~~Gd~fGe 106 (694)
T 3cf6_E 31 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG---K-GVVCTLHEGDDFGK 106 (694)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT---T-EEEEEEETTCEECH
T ss_pred HHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC---C-EEEEEeCCCCEeeh
Confidence 46789999999999999999999998 7899999999999999999999999999998752 3 46678999999999
Q ss_pred hhhhcCCcceeEEEEcc-eEEEEEEcHHHHHHHHhhCcHH
Q 002099 814 YEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSDPAV 852 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~-~~~l~~i~~~~f~~ll~~~p~~ 852 (967)
.+++.+.++.++++|.+ +|+++.|++++|.++++++|.+
T Consensus 107 ~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 107 LALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp HHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred HHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 99999999999999999 5999999999999999999876
No 53
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=2.1e-11 Score=155.30 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=98.2
Q ss_pred hhHhhhCCCCCCCChhhhHHhhhccEEEE-ecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeech
Q 002099 735 SDLISAHPLLRELPPSVREPLELSTKEIM-KLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (967)
Q Consensus 735 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~-~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe 813 (967)
.+.++++|.|++++...+..++..+..+. +++|++|++|||.++++|||.+|.|+|+... + ..+..+++||+|||
T Consensus 336 ~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~---~-~~v~~L~~Gd~FGE 411 (999)
T 4f7z_A 336 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG---K-GVVCTLHEGDDFGK 411 (999)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETT---T-EEEEEEETTCEECG
T ss_pred HHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcC---C-cceEEecCCCcccc
Confidence 35788999999999999999999998655 4689999999999999999999999998643 1 23468999999999
Q ss_pred hhhhcCCcceeEEEEcce-EEEEEEcHHHHHHHHhh
Q 002099 814 YEVLIGKPYMSDMVTDSV-VLCFFIESDKILSILRS 848 (967)
Q Consensus 814 ~~ll~~~~~~atv~A~~~-~~l~~i~~~~f~~ll~~ 848 (967)
.+++++.||.+|++|.++ |++++|++++|.+++.+
T Consensus 412 lALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 412 LALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp GGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred hhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 999999999999999985 99999999999999855
No 54
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.15 E-value=1.6e-07 Score=63.55 Aligned_cols=31 Identities=45% Similarity=0.715 Sum_probs=28.4
Q ss_pred cHHHHHHhhcccccccHHHHHHHHhhcCCCc
Q 002099 157 SWKTSLLLGGLLSATDPVAVVALLKELGASK 187 (967)
Q Consensus 157 ~~~~alllgails~Tdp~av~~il~~l~~~~ 187 (967)
+|..|++||+++|+|||++|.++++++++|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4667899999999999999999999999875
No 55
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=97.61 E-value=2.8e-06 Score=54.43 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=23.9
Q ss_pred CCCcchhhhhhhhhhHHHHHHHHHHH
Q 002099 184 GASKKLNTIIEGESLMNDGTAIVVYQ 209 (967)
Q Consensus 184 ~~~~~l~~li~gesl~nD~~aivlf~ 209 (967)
++|+++..+++|||++||++++++|.
T Consensus 1 ~V~~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 1 HINELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp CCSSTTHHHHTTTTTTTTTTTTTTTT
T ss_pred CCCceEEEEEEeeeeecccEEEEEEe
Confidence 46899999999999999999999885
No 56
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=96.80 E-value=1.2e-05 Score=54.59 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhhh
Q 002099 268 VSYIAFFTAQEGADVSGVLTVMTLGMFYAAV 298 (967)
Q Consensus 268 ~~~~~~~~a~e~lg~Sgila~~~aGl~l~~~ 298 (967)
++|++|++| |.+|+||++|++++|++++++
T Consensus 2 ~~y~~Yl~A-E~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 2 KSYMAYLSA-ELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp CCSTTTGGG-SSSTTTTTTTTTTTTSCCCCC
T ss_pred hhHHHHHHH-HHhCcChHHHHHHHHHHHhhc
Confidence 468899999 899999999999999999763
No 57
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=96.53 E-value=0.00088 Score=43.11 Aligned_cols=25 Identities=40% Similarity=0.792 Sum_probs=22.0
Q ss_pred hhHHHHhhccchhhHHHHHhhhhcc
Q 002099 387 KEAIILVWSGLRGAVALSLSLSVKR 411 (967)
Q Consensus 387 ~~~~~l~~~g~RG~v~lalal~v~~ 411 (967)
+++.+++|+|+||++++++++.+|.
T Consensus 2 ~~Q~i~~~~GLRGAvafaL~~~l~~ 26 (28)
T 2kbv_A 2 KDQFIIAYGGLRGAIAFSLGYLLDK 26 (28)
T ss_dssp CHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CceeEEEeecchHHHHHHHHHhccC
Confidence 4788999999999999999988654
No 58
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=95.41 E-value=3.7 Score=44.33 Aligned_cols=110 Identities=10% Similarity=0.095 Sum_probs=57.1
Q ss_pred HHHHHhHHHhhhhhhcCCHHHHHHhhh---hHHHHHHHHHH-HHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHH
Q 002099 101 LLAVFLPALLFESSFAMEVHQIKRCLV---QMILLAGPGVM-ISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (967)
Q Consensus 101 ~~~i~l~~llF~~g~~~~~~~l~~~~~---~i~~la~~gv~-i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av 176 (967)
.....+++++|..|.+++.+++++..+ ......+...+ .+.+ ++.+..+++.+-....++++-++.-+++.+.+
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll--~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v 121 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPAT--AWCLSKLLNLPAEIAVGVILVGCCPGGTASNV 121 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHH--HHHHHHHhCCChHHHHHHHHHhcCCchhHHHH
Confidence 345678899999999999999985443 33322222222 2222 33333344321123344444444444443333
Q ss_pred HHHHhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHcc
Q 002099 177 VALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (967)
Q Consensus 177 ~~il~~l~~~~~l~~li~gesl~nD~~aivlf~~~~~~~~~ 217 (967)
.+ +..|-+. .+......+|...+++..-+.+.+..+
T Consensus 122 ~t--~~a~Gd~---~la~~~~~~stll~~~~~Pl~~~l~~g 157 (332)
T 3zux_A 122 MT--YLARGNV---ALSVAVTSVSTLTSPLLTPAIFLMLAG 157 (332)
T ss_dssp HH--HHTTCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HH--HHhCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 2223333 344455566777777776665555544
No 59
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=81.65 E-value=0.13 Score=32.73 Aligned_cols=24 Identities=13% Similarity=0.640 Sum_probs=20.8
Q ss_pred cChhHHHHHHhHHHhhhhhhcCCH
Q 002099 96 IDPDLLLAVFLPALLFESSFAMEV 119 (967)
Q Consensus 96 ~~~~~~~~i~l~~llF~~g~~~~~ 119 (967)
+++++|+...||+++|++|+.+.-
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~ 25 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPL 25 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGG
T ss_pred CccceeeeeccCccEeeccccccC
Confidence 468889999999999999998753
No 60
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=70.08 E-value=18 Score=31.57 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=41.2
Q ss_pred EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
...+.+|+.+-....+.+.+++|++|.+++...+ +. ..+.+||++=- =.+.+ .++.+.+++.++.+
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~---~~---~~l~~Gd~i~i---~~~~~--H~~~~~~~~~~~~i 107 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITFDD---QK---IDLVPEDVLMV---PAHKI--HAIAGKGRFKMLQI 107 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEETT---EE---EEECTTCEEEE---CTTCC--BEEEEEEEEEEEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEECC---EE---EEecCCCEEEE---CCCCc--EEEEeCCCcEEEEE
Confidence 3345677766544556778999999999987533 22 36889987521 12334 34445567766654
No 61
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=64.87 E-value=23 Score=31.14 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=44.1
Q ss_pred cEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEE
Q 002099 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFF 836 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~ 836 (967)
+....+++|+.+-..-.+.+.+++|++|.+++...+ +. ..+.+||++= -......++.+.+++.++.
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~---~~---~~l~~Gd~i~-----ip~~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDG---AQ---RRLHQGDLLY-----LGAGAAHDVNAITNTSLLV 104 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETT---EE---EEECTTEEEE-----ECTTCCEEEEESSSEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECC---EE---EEECCCCEEE-----ECCCCcEEEEeCCCcEEEE
Confidence 335566788887666556779999999999987643 22 3688988752 2222345566777766443
No 62
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=62.14 E-value=21 Score=35.89 Aligned_cols=68 Identities=10% Similarity=-0.016 Sum_probs=50.9
Q ss_pred cEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
+....+.+|+.+=..--+.+.+++|++|.+++...+ +. ..+++||++ ......+..+.|.++|..+.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~---~~---~~l~~Gd~~-----~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIEN---NK---KTISNGDFL-----EITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESS---CE---EEEETTEEE-----EECSSCCEEEEESSSEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECC---EE---EEECCCCEE-----EECCCCCEEEEECCCcEEEEE
Confidence 446677899999888788999999999999998643 23 367888764 222223567788999999877
No 63
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=55.32 E-value=47 Score=28.72 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=41.6
Q ss_pred EEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 760 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 760 ~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
....+.+|...-..--....+++|++|.+++... ++. ..+.+||++=- =.+. .....+.++++++.+
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~i---p~~~--~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID---QET---YRVAEGQTIVM---PAGI--PHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEET---TEE---EEEETTCEEEE---CTTS--CEEEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC---CEE---EEECCCCEEEE---CCCC--CEEEEECCCceEEEE
Confidence 3445667876643333467899999999998753 222 36889987621 1233 344556667766654
No 64
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=54.39 E-value=3.4 Score=38.89 Aligned_cols=106 Identities=9% Similarity=0.010 Sum_probs=60.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHHhhHHHHhhccHHHHHHHHHhccccccccCCeEEEeecCcee---EEEeeeee
Q 002099 840 DKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIG---FLLEGFIK 916 (967)
Q Consensus 840 ~~f~~ll~~~p~~~~~l~~~~~~~l~~l~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~---iLl~G~v~ 916 (967)
+++........+-....+...+..+ ..+..++.+++..++ ...+...|.+|+.+..+++... ++++|.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~------~~f~~l~~~~l~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 91 (161)
T 3idb_B 19 DAESRIIHPKTDDQRNRLQEACKDI------LLFKNLDPEQMSQVL-DAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD 91 (161)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTC------HHHHTSCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESEEE
T ss_pred ccCCcccCCCCHHHHHHHHHHHhCC------HhhhcCCHHHHHHHH-HhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEE
Confidence 3333433333333334444444443 378889999999988 8888899999999987754433 89999887
Q ss_pred cccc---cc---------ccccCCccccCCCCCcccccccccCCCCCc
Q 002099 917 THGL---QE---------ELITPPAALIPSQGNLSFRSAETSGNLRPP 952 (967)
Q Consensus 917 ~~~~---~e---------eli~~~~~l~~~~~n~~~~~~~~~~~~~~~ 952 (967)
-... .+ +++|..+.+......-+.+.++++-+..++
T Consensus 92 ~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~ 139 (161)
T 3idb_B 92 IYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLD 139 (161)
T ss_dssp EEEEETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEE
T ss_pred EEEcCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEe
Confidence 6421 11 333444444444444445555554444443
No 65
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=51.47 E-value=57 Score=28.19 Aligned_cols=67 Identities=13% Similarity=0.021 Sum_probs=42.0
Q ss_pred EEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 760 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 760 ~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
....+.+|...-..--....+++|++|.+++... ++. ..+.+||++=-- .+. ...+.+.++++++.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~ip---~~~--~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVD---GVI---KVLTAGDSFFVP---PHV--DHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEET---TEE---EEECTTCEEEEC---TTC--CEEEEESSCEEEEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEEC---CEE---EEeCCCCEEEEC---cCC--ceeeEeCCCcEEEEE
Confidence 3455678876533233367899999999998763 222 368899884211 233 345566667777665
No 66
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=51.08 E-value=3.5 Score=38.51 Aligned_cols=82 Identities=9% Similarity=0.019 Sum_probs=52.8
Q ss_pred HHhhccHHHHHHHHHhccccccccCCeEEEeecCcee---EEEeeeeecccccc--------ccccCCccccCCCCCccc
Q 002099 872 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIG---FLLEGFIKTHGLQE--------ELITPPAALIPSQGNLSF 940 (967)
Q Consensus 872 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~---iLl~G~v~~~~~~e--------eli~~~~~l~~~~~n~~~ 940 (967)
.+..++.+++..+. ...+...|.+|+.+..+++... ++++|.++-....+ +++|..+.+......-+.
T Consensus 45 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~~~~~~~~~~~v 123 (154)
T 3pna_A 45 LFSHLDDNERSDIF-DAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATV 123 (154)
T ss_dssp GGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEECCHHHHHCCCCSSEE
T ss_pred hhhhCCHHHHHHHH-HhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCCEeeehHhhcCCCcceEE
Confidence 67789999999988 7788899999999987754433 88999887653221 334444444443334455
Q ss_pred ccccccCCCCCccc
Q 002099 941 RSAETSGNLRPPLE 954 (967)
Q Consensus 941 ~~~~~~~~~~~~~~ 954 (967)
+.++++-+..++..
T Consensus 124 ~A~~~~~~~~i~~~ 137 (154)
T 3pna_A 124 KAKTNVKLWGIDRD 137 (154)
T ss_dssp EESSCEEEEEEEHH
T ss_pred EECcceEEEEEeHH
Confidence 55555544444433
No 67
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=49.35 E-value=68 Score=30.30 Aligned_cols=88 Identities=13% Similarity=0.003 Sum_probs=50.2
Q ss_pred cEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEE-cceEEEEEE
Q 002099 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVT-DSVVLCFFI 837 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A-~~~~~l~~i 837 (967)
+....+.||..+-..--....+++|++|.+++...+ + ...+.+||++=- -.+.+....... .+++..+++
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~---~---~~~l~~Gd~i~i---p~~~~H~~~n~~~~~~~~~l~i 128 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDD---R---VEPLTPLDCVYI---APHAWHQIHATGANEPLGFLCI 128 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETT---E---EEEECTTCEEEE---CTTCCEEEEEESSSCCEEEEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECC---E---EEEECCCCEEEE---CCCCcEEEEeCCCCCCEEEEEE
Confidence 334566677765444445788999999999987543 2 236889987622 124444433333 445555544
Q ss_pred c----------HHHHHHHHhhCcHHHHH
Q 002099 838 E----------SDKILSILRSDPAVEDF 855 (967)
Q Consensus 838 ~----------~~~f~~ll~~~p~~~~~ 855 (967)
- ...-..-+.++|.++.+
T Consensus 129 ~~~~~d~p~~p~~~~~~~l~~~~~~~~~ 156 (167)
T 3ibm_A 129 VDSDRDRPQRPDADDLARMCADPAVARR 156 (167)
T ss_dssp EESSCCCCBCCCHHHHHHHTTSHHHHHH
T ss_pred EeCCcCcccCCCHHHHHHHHcChHHHHh
Confidence 2 12222335566766654
No 68
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=47.97 E-value=90 Score=27.56 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=31.7
Q ss_pred EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
...+.+|..+-.. ...+.+++|++|.+++.. +|+. ..+++||++
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~~---~~l~~GD~v 87 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGET---VTAGPGEIV 87 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTEE---EEECTTCEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEE
Confidence 4456677765443 377899999999999976 3333 368999986
No 69
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=47.81 E-value=45 Score=31.63 Aligned_cols=45 Identities=9% Similarity=-0.169 Sum_probs=29.9
Q ss_pred EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
...+.||...-..--....+++|++|.+++...+ +. ..+.+||++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g---~~---~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGR---AV---SAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEETT---EE---EEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEECC---EE---EEeCCCCEE
Confidence 3455666655443344568999999999987532 22 368899875
No 70
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=44.93 E-value=45 Score=31.23 Aligned_cols=45 Identities=11% Similarity=-0.073 Sum_probs=29.8
Q ss_pred EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
...+.||...-..--....+++|++|.+++...+ +. ..+.+||++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g---~~---~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGE---TI---SDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETT---EE---EEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEECC---EE---EEeCCCCEE
Confidence 3445566655433344568999999999987533 22 367888875
No 71
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=40.66 E-value=76 Score=27.87 Aligned_cols=77 Identities=10% Similarity=0.010 Sum_probs=45.0
Q ss_pred cEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcce-EEEEEE
Q 002099 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSV-VLCFFI 837 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~-~~l~~i 837 (967)
+....+.+|..+-..--....+++|++|.+++...+ +. ..+.+||++=.- .+.+ ..+.+.++ |.++.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~---~~---~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~~l~v 111 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGE---ET---RVLRPGMAYTIP---GGVR--HRARTFEDGCLVLDI 111 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETT---EE---EEECTTEEEEEC---TTCC--EEEECCTTCEEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECC---EE---EEeCCCCEEEEC---CCCc--EEeEECCCCEEEEEE
Confidence 345566788776544444678999999999987633 22 368899875211 2333 34444444 554432
Q ss_pred ---cHHHHHHHH
Q 002099 838 ---ESDKILSIL 846 (967)
Q Consensus 838 ---~~~~f~~ll 846 (967)
+++++.+.+
T Consensus 112 ~~p~~~d~~~~~ 123 (126)
T 4e2g_A 112 FSPPREDYARMA 123 (126)
T ss_dssp EESCCHHHHHHH
T ss_pred ECCCCcchhhhh
Confidence 345555443
No 72
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=40.46 E-value=46 Score=36.22 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=21.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHccccchHhHHHHHHHHHHHHHHhhcCC
Q 002099 648 VIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLID-YIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNP 726 (967)
Q Consensus 648 ii~e~~~~~~~a~~~L~~l~~~~p~i~~~l~t~~~~~~ll~~~~~-~~~~l~~~G~l~~~e~~~l~~~i~~~l~~l~~~~ 726 (967)
.++++....++.++.|+.-...++++.+.|..-+-.-.=+.+.++ |+.++.+.|.-+++ +.+-+. +.-...+
T Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~----i~~~L~---~~~~~~~ 285 (373)
T 3hhm_B 213 RISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKK----LNEWLG---NENTEDQ 285 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHhc---cCCCCCc
Confidence 334444445555555555555555666555543332222333333 45566666655544 111111 0000111
Q ss_pred CCC-CCCChhhHhhhCCCCC-CCChhhhHHhhhccEEEEecCCCeeecCC
Q 002099 727 PLV-KFPKISDLISAHPLLR-ELPPSVREPLELSTKEIMKLSGVTLYREG 774 (967)
Q Consensus 727 ~~~-~~~~~~~~l~~~~lF~-~l~~~~l~~l~~~~~~~~~~~ge~I~~eG 774 (967)
... .......-....|||. .++.++-+.++.. -+.|.+++|.-
T Consensus 286 ~~~~e~~~~~~~~~~~~WyhG~isR~~AE~LL~~-----~~~G~FLVR~S 330 (373)
T 3hhm_B 286 YSLVEDDEDLPHHDEKTWNVGSSNRNKAENLLRG-----KRDGTFLVRES 330 (373)
T ss_dssp --------------------------------------------------
T ss_pred ccccccccccccccCCCCcCCCCCHHHHHHHhcc-----CCCCcEEEEec
Confidence 000 0000112356678875 5787777776632 26899999987
No 73
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=38.62 E-value=15 Score=33.28 Aligned_cols=81 Identities=6% Similarity=0.010 Sum_probs=52.4
Q ss_pred HHhhccHHHHHHHHHhccccccccCCeEEEeecCcee---EEEeeeeecccccc--------ccccCCccccCCCCCccc
Q 002099 872 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIG---FLLEGFIKTHGLQE--------ELITPPAALIPSQGNLSF 940 (967)
Q Consensus 872 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~---iLl~G~v~~~~~~e--------eli~~~~~l~~~~~n~~~ 940 (967)
.+..++.+.+..+. ...+...|.+|+.+..+.+... ++++|.++-..... +++|..+.+......-+.
T Consensus 30 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~~~~G~~fGe~~~l~~~~~~~~~ 108 (139)
T 3ocp_A 30 FMKNLELSQIQEIV-DCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATV 108 (139)
T ss_dssp TTTTSCHHHHHHHH-HHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEEECTTCEESCHHHHHCCCCSSEE
T ss_pred hhhcCCHHHHHHHH-HhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEEeCCCCEeccHHHHCCCCcceEE
Confidence 56788889999888 7888899999999987754433 88999887643211 333444444444444455
Q ss_pred ccccccCCCCCcc
Q 002099 941 RSAETSGNLRPPL 953 (967)
Q Consensus 941 ~~~~~~~~~~~~~ 953 (967)
+.++++-+..++.
T Consensus 109 ~a~~~~~v~~i~~ 121 (139)
T 3ocp_A 109 KTLVNVKLWAIDR 121 (139)
T ss_dssp EESSCEEEEEEEH
T ss_pred EECcceEEEEEcH
Confidence 5555554444443
No 74
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=38.03 E-value=1.1e+02 Score=34.28 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=19.7
Q ss_pred HHhhcCCCcchhhhhhhhhhHHHHHHHHHHHH
Q 002099 179 LLKELGASKKLNTIIEGESLMNDGTAIVVYQL 210 (967)
Q Consensus 179 il~~l~~~~~l~~li~gesl~nD~~aivlf~~ 210 (967)
+++++|+++.+.+--. -+-++|.+++++|..
T Consensus 434 ~~~~~~~DPa~~s~p~-itt~~D~~g~~~~~~ 464 (473)
T 2zy9_A 434 LLRRLGVDPALVSNPL-VATLSDVTGLLIYLS 464 (473)
T ss_dssp HHHHHTCCGGGSCHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccccccch-HHHHHHHHHHHHHHH
Confidence 4588888777654332 234678888776643
No 75
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=37.85 E-value=77 Score=31.63 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=44.7
Q ss_pred cEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEE-cceEEEEE
Q 002099 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVT-DSVVLCFF 836 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A-~~~~~l~~ 836 (967)
+....+.+|+.+-..--+.+.+++|++|.+++...+ +. ..+.+||++= .....+..+.+ .++++++.
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g---~~---~~l~~Gd~i~-----ip~~~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDG---KP---FIVKKGESAV-----LPANIPHAVEAETENFKMLL 222 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETT---EE---EEEETTEEEE-----ECTTSCEEEECCSSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECC---EE---EEECCCCEEE-----ECCCCcEEEEeCCCCEEEEE
Confidence 345667789887655555778999999999987533 22 3678988752 12223455667 77777654
No 76
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=36.02 E-value=34 Score=32.86 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=37.2
Q ss_pred cEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
+....+.||...-..-..++.+++|++|.+++...+.+|... ..+++||++=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~--~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDT--YKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEE--EEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEE--EEECCCCEEE
Confidence 345567788776554444689999999999998876555443 4789999763
No 77
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=35.56 E-value=51 Score=31.50 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=41.9
Q ss_pred cEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
+....+.||...-.--.....+++|++|.+++...+ |+. ..+++||++ . -.+.++...-...+.|+++++
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~--ge~---~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD--GAK---RTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG--GCE---EEECTTCEE-E---ECSCCBEEECCSSSCEEEEEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC--CeE---EEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEE
Confidence 345567777654332233456889999999997542 222 368999997 3 235555444444455665543
No 78
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=35.37 E-value=1.5e+02 Score=25.25 Aligned_cols=44 Identities=18% Similarity=0.087 Sum_probs=30.4
Q ss_pred EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
...+.+|+.-.. -..+.+++|++|.+.+... +|+. ..+++||++
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~--~g~~---~~l~~GD~i 78 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTTE--DGKK---YVIEKGDLV 78 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEET--TCCE---EEEETTCEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEEC--CCCE---EEECCCCEE
Confidence 445667765444 3467899999999998763 1333 368899986
No 79
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=33.05 E-value=1e+02 Score=25.56 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=39.3
Q ss_pred EEEEecCCCeeecCCCC-CCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 760 KEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 760 ~~~~~~~ge~I~~eGe~-~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
....+.+|..+-..--. .+.+++|++|.+++...+ +. ..+.+||++=-- .+.++.......+++.++.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~---~~---~~l~~Gd~~~ip---~~~~H~~~~~~~~~~~~~~v 100 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGE---EE---ALLAPGMAAFAP---AGAPHGVRNESASPALLLVV 100 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETT---EE---EEECTTCEEEEC---TTSCEEEECCSSSCEEEEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECC---EE---EEeCCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 34556788776433223 357999999999987532 22 368899876211 23333332222345665544
No 80
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=32.01 E-value=1.4e+02 Score=28.65 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=40.8
Q ss_pred EEEecCCCeeec---CCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEc---ceEEE
Q 002099 761 EIMKLSGVTLYR---EGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTD---SVVLC 834 (967)
Q Consensus 761 ~~~~~~ge~I~~---eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~---~~~~l 834 (967)
...+.||...-. -..+++.+++|++|.+++...+.++.+. ..+++||++=-- .+.++ ...+. ++|++
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~--~~l~~GD~~~~~---~~~~H--~~~n~~~~~~~~~ 193 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKE--ALLPTGASMFVE---EHVPH--AFTAAKGTGSAKL 193 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEE--EEECTTCEEEEC---TTCCE--EEEESTTSCCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCccc--EEECCCCEEEeC---CCCce--EEEecCCCCCeEE
Confidence 345667765531 2234478999999999998644111122 478999986221 23343 34444 56766
Q ss_pred EEE
Q 002099 835 FFI 837 (967)
Q Consensus 835 ~~i 837 (967)
+.+
T Consensus 194 l~v 196 (198)
T 2bnm_A 194 IAV 196 (198)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 81
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=31.06 E-value=22 Score=32.80 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=38.0
Q ss_pred HHhhccHHHHHHHHHhccccccccCCeEEEeecCcee---EEEeeeeeccc
Q 002099 872 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIG---FLLEGFIKTHG 919 (967)
Q Consensus 872 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~---iLl~G~v~~~~ 919 (967)
.+..++.+.+..+. ...+...|.+|+.+..+++... ++++|.++-..
T Consensus 34 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 83 (160)
T 4f8a_A 34 AFRLASDGCLRALA-MEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ 83 (160)
T ss_dssp GGTTCCHHHHHHHH-TTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE
T ss_pred hhhhCCHHHHHHHH-HhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE
Confidence 56788999999888 8889999999999987764433 89999987643
No 82
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=30.06 E-value=1e+02 Score=29.73 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=37.4
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeecc
Q 002099 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKTH 918 (967)
Q Consensus 871 ~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~~ 918 (967)
..+..++.+.+..++ ...+...|.+|+.+..+++.. .++.+|.++-.
T Consensus 78 ~~f~~l~~~~l~~l~-~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~ 127 (202)
T 3bpz_A 78 PLFANADPNFVTAML-TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVL 127 (202)
T ss_dssp HHHHTSCHHHHHHHH-HHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEE
T ss_pred CchhcCCHHHHHHHH-HhCCceEECCCCEEEECCCcCCeEEEEeccEEEEE
Confidence 367788999999888 788889999999998765433 38899998764
No 83
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=29.76 E-value=59 Score=27.73 Aligned_cols=69 Identities=10% Similarity=-0.004 Sum_probs=40.2
Q ss_pred ecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEcHHHH
Q 002099 764 KLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKI 842 (967)
Q Consensus 764 ~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~~~~f 842 (967)
..+|+...+.-+..+.+++|++|.+++...+ ++. ..+.+||++=- =.+.++ +..+.+++.++.++....
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~--~~~---~~l~~Gd~~~i---p~~~~H--~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD--GGS---MTIREGEMAVV---PKSVSH--RPRSENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT--SCE---EEECTTEEEEE---CTTCCE--EEEEEEEEEEEEEECC--
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC--CcE---EEECCCCEEEE---CCCCcE--eeEeCCCeEEEEEECCCc
Confidence 3456544344443489999999999987533 132 36889987621 124443 344456788888765543
No 84
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=29.33 E-value=80 Score=26.84 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=32.1
Q ss_pred cEEEEecCCCeeecC--CCC-CCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 759 TKEIMKLSGVTLYRE--GSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 759 ~~~~~~~~ge~I~~e--Ge~-~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
+....+.+|..+-.. --. ...+++|++|.+++...+ +. ..+++||++
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~---~~---~~l~~Gd~~ 72 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDG---HT---QALQAGSLI 72 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETT---EE---EEECTTEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECC---EE---EEeCCCCEE
Confidence 344567788876443 233 678999999999987632 22 368888875
No 85
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=29.29 E-value=1.2e+02 Score=27.83 Aligned_cols=65 Identities=6% Similarity=0.066 Sum_probs=42.0
Q ss_pred ecCCCCCCeEEEEeeeeEEEEEeeC--CCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEcHH
Q 002099 771 YREGSKPSGIWLISNGVVKWTSKSI--RNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 840 (967)
Q Consensus 771 ~~eGe~~~~ly~I~~G~V~v~~~~~--~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~~~ 840 (967)
.+.-+..|.+|++++|.+.+...+. ++...-...+++|+++= +... -...-+|.++|+++.|...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yv----VPkG-veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYN----VPAE-CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEE----ECTT-CEEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEE----eCCC-ccCcccCCCceEEEEEEeC
Confidence 3455678999999999999987642 11111224688988752 2211 2355567788888888665
No 86
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=28.84 E-value=82 Score=26.22 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=34.9
Q ss_pred cCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEc
Q 002099 772 REGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIE 838 (967)
Q Consensus 772 ~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~ 838 (967)
+.-+....++++++|.+.+...+ +. ..+.+||++=- =.+.+ .+..+.+++.++.++
T Consensus 45 H~H~~~~e~~~v~~G~~~~~~~~---~~---~~l~~Gd~~~i---p~~~~--H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 45 HEHADTDEVFIVMEGTLQIAFRD---QN---ITLQAGEMYVI---PKGVE--HKPMAKEECKIMIIE 100 (102)
T ss_dssp BCCTTCCEEEEEEESEEEEECSS---CE---EEEETTEEEEE---CTTCC--BEEEEEEEEEEEEEE
T ss_pred eeCCCCcEEEEEEeCEEEEEECC---EE---EEEcCCCEEEE---CCCCe--EeeEcCCCCEEEEEE
Confidence 33333478999999999987533 22 35788887511 12333 344455788888775
No 87
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=28.75 E-value=29 Score=31.58 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=51.8
Q ss_pred HHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeecccc----cc---------ccccCCccccCCC
Q 002099 872 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKTHGL----QE---------ELITPPAALIPSQ 935 (967)
Q Consensus 872 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~~~~----~e---------eli~~~~~l~~~~ 935 (967)
.+..++.+++..+. ...+...|.+|+.+..+.+.. .++++|.++-... .+ +++|..+.+....
T Consensus 19 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~ 97 (154)
T 2z69_A 19 LFEPLSPVQLQELL-ASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTP 97 (154)
T ss_dssp TTTTSCHHHHHHHH-HTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSCS
T ss_pred hhcCCCHHHHHHHH-hhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCC
Confidence 56688889999888 788999999999997765433 3899998876421 11 2334434444433
Q ss_pred -CCcccccccccCCCCCccc
Q 002099 936 -GNLSFRSAETSGNLRPPLE 954 (967)
Q Consensus 936 -~n~~~~~~~~~~~~~~~~~ 954 (967)
..-+.+.++++-+..++..
T Consensus 98 ~~~~~~~a~~~~~~~~i~~~ 117 (154)
T 2z69_A 98 NYVATAQAVVPSQLFRFSNK 117 (154)
T ss_dssp BCSSEEEESSSEEEEEEEHH
T ss_pred CCceEEEEccceEEEEECHH
Confidence 4445555555555544433
No 88
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=28.10 E-value=54 Score=29.10 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=51.4
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeecccccc------ccccCCccccCCCCCcccc
Q 002099 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKTHGLQE------ELITPPAALIPSQGNLSFR 941 (967)
Q Consensus 871 ~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~~~~~e------eli~~~~~l~~~~~n~~~~ 941 (967)
..+..++.+.+..+. ...+...|.+|+.+..+++.. .++++|.++-....+ +++|..+.+......-+.+
T Consensus 17 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~ 95 (138)
T 1vp6_A 17 PLFQKLGPAVLVEIV-RALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAFFGEMALISGEPRSATVS 95 (138)
T ss_dssp GGGGGCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSSCEEECTTCEECHHHHHHCCCCSSCEE
T ss_pred hhhhcCCHHHHHHHH-HhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCCcceECCCCEeeehHhccCCCceeEEE
Confidence 356788989999888 788889999999998765433 389999988654321 2233333333333334455
Q ss_pred cccccCCCCCcc
Q 002099 942 SAETSGNLRPPL 953 (967)
Q Consensus 942 ~~~~~~~~~~~~ 953 (967)
.++++-+..++.
T Consensus 96 a~~~~~~~~i~~ 107 (138)
T 1vp6_A 96 AATTVSLLSLHS 107 (138)
T ss_dssp ESSSEEEEEEEH
T ss_pred ECCCEEEEEECH
Confidence 555544444443
No 89
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=27.94 E-value=1.6e+02 Score=26.60 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=37.9
Q ss_pred EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
...+.||..=.+ ...+.+++|++|.+++... |+. ..+++||.+--- .+.+.. ....++++.+.+
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~---g~~---~~l~~GD~i~~p---~g~~h~--~~~~~~~~~l~v 124 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE---GET---MIAKAGDVMFIP---KGSSIE--FGTPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET---TEE---EEEETTCEEEEC---TTCEEE--EEEEEEEEEEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC---CEE---EEECCCcEEEEC---CCCEEE--EEeCCCEEEEEE
Confidence 445667743222 2467899999999998753 333 268999986322 233323 334456665443
No 90
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=27.35 E-value=61 Score=28.76 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=31.8
Q ss_pred EEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
.-...+|..-+... ..+.++.|++|.+.+... +|... .+++||.|-
T Consensus 46 vWe~tPG~~~~~~~-~~~E~~~iLeG~~~lt~d--dG~~~---~l~aGD~~~ 91 (116)
T 3es4_A 46 VWMAEPGIYNYAGR-DLEETFVVVEGEALYSQA--DADPV---KIGPGSIVS 91 (116)
T ss_dssp EEEECSEEEEECCC-SEEEEEEEEECCEEEEET--TCCCE---EECTTEEEE
T ss_pred EEecCCceeECeeC-CCcEEEEEEEeEEEEEeC--CCeEE---EECCCCEEE
Confidence 34556777665553 345899999999999743 45443 688999864
No 91
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=26.76 E-value=1.4e+02 Score=27.67 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=31.8
Q ss_pred CCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 776 KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 776 ~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
..+.+++|++|.+++.. +|+. ..+++||.+=-- .|.+.. ..+.++|+.+++
T Consensus 83 ~~eE~~yVLeG~~~l~i---~g~~---~~l~~GD~i~iP---~G~~h~--~~n~~~a~~l~V 133 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII---DGRK---VSASSGELIFIP---KGSKIQ--FSVPDYARFIYV 133 (151)
T ss_dssp SSEEEEEEEEEEEEEEE---TTEE---EEEETTCEEEEC---TTCEEE--EEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE---CCEE---EEEcCCCEEEEC---CCCEEE--EEeCCCEEEEEE
Confidence 46789999999999985 3433 368899976211 233333 333366765554
No 92
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=26.58 E-value=93 Score=27.88 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=30.2
Q ss_pred EEEEecCCCeeecCCCC-CCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 760 KEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 760 ~~~~~~~ge~I~~eGe~-~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
....+.||..+-.---. ...+++|++|.+.+...+ +. ..+.+||++
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~---~~---~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNG---KD---VPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETT---EE---EEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEECC---EE---EEeCCCcEE
Confidence 34566788765322222 368999999999987532 22 368899875
No 93
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=25.59 E-value=1.5e+02 Score=28.17 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=40.9
Q ss_pred eeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcc-eEEEEEEcHH
Q 002099 769 TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDS-VVLCFFIESD 840 (967)
Q Consensus 769 ~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~-~~~l~~i~~~ 840 (967)
..++ -++.+.+|++++|...+...+ +|+... ..+++||+|=-- .|.| .+-++.+ ++..+.+.+.
T Consensus 48 ~d~H-~h~~dE~FyvlkG~m~i~v~d-~g~~~~-v~l~eGE~f~lP---~gvp--H~P~r~~~e~~~lviE~~ 112 (174)
T 1yfu_A 48 TDYH-DDPLEEFFYQLRGNAYLNLWV-DGRRER-ADLKEGDIFLLP---PHVR--HSPQRPEAGSACLVIERQ 112 (174)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEE-TTEEEE-EEECTTCEEEEC---TTCC--EEEEBCCTTCEEEEEEEC
T ss_pred ccCc-CCCCceEEEEEeeEEEEEEEc-CCceee-EEECCCCEEEeC---CCCC--cCccccCCCCEEEEEEeC
Confidence 6666 447899999999999998766 343322 478999987321 2233 3344454 6666666554
No 94
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=25.55 E-value=62 Score=28.77 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=38.1
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeecc
Q 002099 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKTH 918 (967)
Q Consensus 871 ~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~~ 918 (967)
..+..++.+++..+. ...+...|.+|+.+..+.+.. .++++|.++-.
T Consensus 12 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 61 (142)
T 3mdp_A 12 RFFASLTDEQLKDIA-LISEEKSFPTGSVIFKENSKADNLMLLLEGGVELF 61 (142)
T ss_dssp HHHHTSCHHHHHHHH-HTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEE
T ss_pred chhccCCHHHHHHHH-HhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEE
Confidence 467889999999888 888999999999998775443 38999988764
No 95
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=25.14 E-value=29 Score=31.37 Aligned_cols=46 Identities=22% Similarity=0.160 Sum_probs=36.1
Q ss_pred HHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeecc
Q 002099 872 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKTH 918 (967)
Q Consensus 872 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~~ 918 (967)
.+..++.+.+..+. ...+...|.+|+.+..+++.. .++++|.++-.
T Consensus 12 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 60 (149)
T 2pqq_A 12 LFAALDDEQSAELR-ASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLH 60 (149)
T ss_dssp TTTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSEECEEEEEEESCEEEE
T ss_pred hhhcCCHHHHHHHH-HhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEE
Confidence 45678888888888 778899999999997765433 38899988754
No 96
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=24.62 E-value=1.1e+02 Score=29.02 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=43.6
Q ss_pred CCC-eeecCCCCCCeEEEEeeeeEEEEEeeCCC---ceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEcHH
Q 002099 766 SGV-TLYREGSKPSGIWLISNGVVKWTSKSIRN---KHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 840 (967)
Q Consensus 766 ~ge-~I~~eGe~~~~ly~I~~G~V~v~~~~~~g---~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~~~ 840 (967)
|++ .-++ -++.+.++++++|...+...++ | +......+++||+|=-- .|.| .+-++..++..+.+.+.
T Consensus 43 Pn~r~D~H-~~~~eE~Fy~lkG~m~l~v~d~-g~~~~~~~dv~i~eGdmfllP---~gvp--HsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 43 PNERTDYH-INPTPEWFYQKKGSMLLKVVDE-TDAEPKFIDIIINEGDSYLLP---GNVP--HSPVRFADTVGIVVEQD 114 (176)
T ss_dssp SBCCSCEE-ECSSCEEEEEEESCEEEEEEEC-SSSSCEEEEEEECTTEEEEEC---TTCC--EEEEECTTCEEEEEEEC
T ss_pred CCcCCcCc-CCCCceEEEEEeCEEEEEEEcC-CCcccceeeEEECCCCEEEcC---CCCC--cCCcccCCcEEEEEEec
Confidence 446 6777 6778899999999999987763 3 11222478999887321 2333 33333466777766554
No 97
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=24.37 E-value=88 Score=29.97 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=36.7
Q ss_pred HHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeecc
Q 002099 872 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKTH 918 (967)
Q Consensus 872 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~~ 918 (967)
.+..++.+.+..++ ...+...|.+|+.+..+++.. .++.+|.++-.
T Consensus 78 ~f~~l~~~~l~~l~-~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~ 126 (198)
T 2ptm_A 78 FFVGADSNFVTRVV-TLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDII 126 (198)
T ss_dssp GGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEE
T ss_pred chhcCCHHHHHHHH-HhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEE
Confidence 56688888899888 788999999999998765443 38889988754
No 98
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=23.93 E-value=1.4e+02 Score=25.99 Aligned_cols=71 Identities=7% Similarity=0.002 Sum_probs=40.7
Q ss_pred cEEEEecCCCeeecCCCC-CCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 759 TKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 759 ~~~~~~~~ge~I~~eGe~-~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
+....+.||..+-..--. ...+++|++|.+++... +|+. ..+++||++= +=.+.++.......+++.++.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~~~~---~~l~~Gd~~~---i~~~~~H~~~n~~~~~~~~l~v 112 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG--NGIV---THLKAGDIAI---AKPGQVHGAMNSGPEPFIFVSV 112 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS--TTCE---EEEETTEEEE---ECTTCCCEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC--CCeE---EEeCCCCEEE---ECCCCEEEeEeCCCCCEEEEEE
Confidence 345566788876544344 36788999999998641 2333 3678998752 1134444433333455555443
No 99
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=23.54 E-value=1.8e+02 Score=31.49 Aligned_cols=74 Identities=8% Similarity=-0.072 Sum_probs=45.2
Q ss_pred EEEEecCCCeeecCCCCC-CeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 760 KEIMKLSGVTLYREGSKP-SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 760 ~~~~~~~ge~I~~eGe~~-~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
....+.+|...-..-... +.+++|++|.+++...+.+|+... ..+++||++=-- .+.++.......++++++.+
T Consensus 260 ~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~-~~l~~GD~~~ip---~~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 260 ALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHART-FNYQAGDVGYVP---FAMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEE-EEEESSCEEEEC---TTCBEEEEECSSSCEEEEEE
T ss_pred EEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEE-EEEcCCCEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 355667887764333334 789999999999987755554222 368899986321 23333333233456766665
No 100
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=23.52 E-value=71 Score=28.56 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=30.7
Q ss_pred EEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 762 IMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 762 ~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
-...+|..-.+..+ .+.+++|++|.+.+... +|+.. .+++||++-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~--~g~~~---~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDP--DGTVH---AVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECT--TCCEE---EEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEEC--CCeEE---EECCCCEEE
Confidence 34556766655433 38999999999999752 34433 688999863
No 101
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=23.10 E-value=1.4e+02 Score=33.64 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=40.6
Q ss_pred hhhccEEEEecCCCeeecC-CCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 755 LELSTKEIMKLSGVTLYRE-GSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 755 l~~~~~~~~~~~ge~I~~e-Ge~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
+--.+....+.||..+-.- -..++.+++|++|.+++...+.+|+......+.+||+|
T Consensus 365 lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 365 FGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp HTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 3344556667777755332 23367999999999999888776666554579999986
No 102
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=23.06 E-value=1.3e+02 Score=34.04 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=40.3
Q ss_pred hccEEEEecCCCeeecCC-CCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 757 LSTKEIMKLSGVTLYREG-SKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 757 ~~~~~~~~~~ge~I~~eG-e~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
-.+....+.||..+-.-= ..++.+++|++|.+.+...+.+|+......+.+||+|
T Consensus 372 is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 372 LSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp CEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred EEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 345566777887653322 3367999999999999888877766655579999986
No 103
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=23.02 E-value=1.5e+02 Score=30.58 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEecCCC---eeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEEc
Q 002099 762 IMKLSGV---TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIE 838 (967)
Q Consensus 762 ~~~~~ge---~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i~ 838 (967)
..+-.|+ ..++ -+..+.+|++++|...+...+ +|+...+ .+++|++| +.-..-+++=++.++|..+.|.
T Consensus 34 V~~vgGpN~R~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~~~~V-~i~eGemf-----llP~gv~HsP~r~~et~gLviE 105 (286)
T 2qnk_A 34 VMFIGGPNTRKDYH-IEEGEEVFYQLEGDMVLRVLE-QGKHRDV-VIRQGEIF-----LLPARVPHSPQRFANTVGLVVE 105 (286)
T ss_dssp EEEECSCBCCCCEE-ECSSCEEEEEEESCEEEEEEE-TTEEEEE-EECTTEEE-----EECTTCCEEEEECTTCEEEEEE
T ss_pred EEEEeCCCcCccCc-CCCCCeEEEEEeCeEEEEEEe-CCceeeE-EECCCeEE-----EeCCCCCcCCcccCCeEEEEEe
Q ss_pred H
Q 002099 839 S 839 (967)
Q Consensus 839 ~ 839 (967)
+
T Consensus 106 ~ 106 (286)
T 2qnk_A 106 R 106 (286)
T ss_dssp E
T ss_pred e
No 104
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=22.82 E-value=1.2e+02 Score=34.18 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=40.0
Q ss_pred ccEEEEecCCCeeecCC-CCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 758 STKEIMKLSGVTLYREG-SKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 758 ~~~~~~~~~ge~I~~eG-e~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
.+....+.||..+-.-= ..++.+++|++|..++...+.+|+......+.+||++
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 35566777888653332 2367999999999999988877766655679999986
No 105
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.82 E-value=1.6e+02 Score=26.79 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=41.4
Q ss_pred EEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEEE
Q 002099 760 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (967)
Q Consensus 760 ~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~i 837 (967)
....+.+|..+-..--....+++|++|.+.+...+ +. ...+.+||++=- -.+.+........+++.++.+
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~---~~--~~~l~~Gd~i~i---p~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG---KP--ARILKKGDVVEI---PPNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETT---SC--CEEEETTCEEEE---CTTCCEEEEEBTTBCEEEEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECC---EE--EEEECCCCEEEE---CCCCcEEeEeCCCCCEEEEEE
Confidence 34566777766433334578999999999987533 22 125789987632 234454444444455555544
No 106
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=22.61 E-value=1.3e+02 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccc
Q 002099 135 PGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL 168 (967)
Q Consensus 135 ~gv~i~~~~~~~~~~~~~~~~~~~~~alllgail 168 (967)
..+++..++.|...+.... +|++..|+.++.+.
T Consensus 28 ~~~~~~~~~~g~~~~~~~e-~~~~~~a~y~~~~T 60 (114)
T 2q67_A 28 FVLTILTLISGTIFYSTVE-GLRPIDALYFSVVT 60 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 3344444455666665555 89999999988643
No 107
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=22.40 E-value=68 Score=30.80 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=31.7
Q ss_pred hhCCCCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEE
Q 002099 739 SAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWL 782 (967)
Q Consensus 739 ~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~ 782 (967)
-++|+|.+++-.+-++.+.. ..|++|+|+.+.++++-+
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 35899999999999888887 259999999999887443
No 108
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=21.76 E-value=2.2e+02 Score=23.82 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=37.4
Q ss_pred EEEecCCCeeecCCCC-CCeE-EEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcceeEEEEcceEEEEE
Q 002099 761 EIMKLSGVTLYREGSK-PSGI-WLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFF 836 (967)
Q Consensus 761 ~~~~~~ge~I~~eGe~-~~~l-y~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~atv~A~~~~~l~~ 836 (967)
...+.+|..+-..--. ...+ ++|++|.+++...+ |+. ..+.+||++=-- .+. ..++.+.++++++.
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~--~~~---~~l~~Gd~~~ip---~~~--~H~~~~~~~~~~l~ 104 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG--DAV---IPAPRGAVLVAP---IST--PHGVRAVTDMKVLV 104 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG--GCE---EEECTTEEEEEE---TTS--CEEEEESSSEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC--CEE---EEECCCCEEEeC---CCC--cEEEEEcCCcEEEE
Confidence 4456688766432222 2456 79999999987531 222 367888865211 233 34455566665544
No 109
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=21.71 E-value=1.4e+02 Score=27.45 Aligned_cols=38 Identities=11% Similarity=-0.095 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccc
Q 002099 132 LAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA 170 (967)
Q Consensus 132 la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~ 170 (967)
..+..+++..++.|.+.+.... +|++..|+.++.+...
T Consensus 28 ~~~~~~~~~~~~~g~~~~~~~e-~~~~~~a~y~~~~t~t 65 (148)
T 3vou_A 28 QVLFVLTFLTLTSGTIFYSTVE-GLRPLDALYFSVVTLT 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 3333444444555666665555 8999999998765433
No 110
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=21.70 E-value=56 Score=32.08 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=37.4
Q ss_pred HHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeecc
Q 002099 872 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKTH 918 (967)
Q Consensus 872 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~~ 918 (967)
.+..++.+++..+. ...+...|.+|+.+..+++.. .++++|.++-.
T Consensus 16 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 64 (227)
T 3dkw_A 16 LFEPLSPVQLQELL-ASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIY 64 (227)
T ss_dssp TTSSSCHHHHHHHH-TSCEEEECCTTEEEECTTSBCCEEEEEEESCEECC
T ss_pred hhcCCCHHHHHHHH-hhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEE
Confidence 56788999999888 888999999999998775433 38999998864
No 111
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=21.55 E-value=1.3e+02 Score=27.74 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=31.1
Q ss_pred EEEEecCCCe-e-ecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 760 KEIMKLSGVT-L-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 760 ~~~~~~~ge~-I-~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
....+.||.. . .+.-...+.+++|++|.+++...+ +. ..+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~---~~---~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEN---DQ---YPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETT---EE---EEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECC---EE---EEeCCCCEE
Confidence 3456678873 2 222335678999999999987533 22 368899986
No 112
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=21.48 E-value=48 Score=32.65 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=50.0
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeecccc----cc---------ccccCCccccCC
Q 002099 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKTHGL----QE---------ELITPPAALIPS 934 (967)
Q Consensus 871 ~~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~~~~----~e---------eli~~~~~l~~~ 934 (967)
..+..++.+++..+. ...+...|.+|+.+..+.+.. .++++|.++-... .+ +++|....+...
T Consensus 17 ~lf~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~ 95 (230)
T 3iwz_A 17 TPSLTLDAGTIERFL-AHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIES 95 (230)
T ss_dssp -----CCHHHHHHHH-TTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCC
T ss_pred chhccCCHHHHHHHH-HhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCC
Confidence 467899999999988 888999999999998775433 3889998875421 11 333444444332
Q ss_pred -CCCcccccccccCCCCCcccc
Q 002099 935 -QGNLSFRSAETSGNLRPPLET 955 (967)
Q Consensus 935 -~~n~~~~~~~~~~~~~~~~~~ 955 (967)
..+-+.+.++++-+..++...
T Consensus 96 ~~~~~~~~a~~~~~v~~i~~~~ 117 (230)
T 3iwz_A 96 DTREVILRTRTQCELAEISYER 117 (230)
T ss_dssp SBCCSEEEESSCEEEEEEEHHH
T ss_pred CCceeEEEEcCcEEEEEEeHHH
Confidence 233345556655555544433
No 113
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=20.92 E-value=61 Score=28.71 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=35.7
Q ss_pred HHhhccHHHHHHHHHhccccccccCCeEEEeecCce---eEEEeeeeec
Q 002099 872 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCI---GFLLEGFIKT 917 (967)
Q Consensus 872 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~---~iLl~G~v~~ 917 (967)
.+..++.+.+.++. ...+...|.+|+.+..+.+.. .++++|.++-
T Consensus 13 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~ 60 (137)
T 1wgp_A 13 LFENMDERLLDAIC-ERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLES 60 (137)
T ss_dssp GGGSCCHHHHHHHH-HHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEE
T ss_pred chhhCCHHHHHHHH-HHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEE
Confidence 45678888888888 788899999999997765433 3889999874
No 114
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=20.13 E-value=2.2e+02 Score=27.01 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=30.4
Q ss_pred EEEecCCCeeec--CCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCee
Q 002099 761 EIMKLSGVTLYR--EGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (967)
Q Consensus 761 ~~~~~~ge~I~~--eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~f 811 (967)
...+.||..... -....+.+++|++|.+++...+ +. ..+.+||++
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~---~~---~~l~~GD~i 154 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDE---QW---HELQQGEHI 154 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETT---EE---EEECTTCEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECC---EE---EEeCCCCEE
Confidence 345667776542 2233468999999999987632 22 378999976
No 115
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=20.09 E-value=83 Score=27.30 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=28.8
Q ss_pred ecCCCeeec---CCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeec
Q 002099 764 KLSGVTLYR---EGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (967)
Q Consensus 764 ~~~ge~I~~---eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fG 812 (967)
..+|+.... -....+.+++|++|.+++...+ +.. ...+++||++=
T Consensus 37 ~~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~---~~~-~~~l~~Gd~i~ 84 (112)
T 2opk_A 37 ISNGQASPPGFWYDSPQDEWVMVVSGSAGIECEG---DTA-PRVMRPGDWLH 84 (112)
T ss_dssp EESSCCCCTTCCBCCSSEEEEEEEESCEEEEETT---CSS-CEEECTTEEEE
T ss_pred EeCCccCCCCccccCCccEEEEEEeCeEEEEECC---EEE-EEEECCCCEEE
Confidence 345655433 2345678999999999997643 220 02588998763
Done!