BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002100
(967 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 53/259 (20%)
Query: 408 RERLAM-VGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVV 466
+E+LA+ + H + +G ED+K A E + + ++ + ++
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKK-------------AIELFPRVNSYIYMALI 279
Query: 467 MLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMY 526
M +R + + N+F A++ S V + RG MN ++ +Y G
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSV-----YYHRGQ-------MNFILQNYDQAG--- 324
Query: 527 QERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKL---AAAITEINRIIGFK 583
D + A ELDP +PY A L ENK +E R F
Sbjct: 325 -------------KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFP 369
Query: 584 VSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY---GQLHGDNLVETLQPLVQ 640
+P+ A I D+D AL+ + L+ Y L G + T P V+
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429
Query: 641 QWSQADCWMQLYDRWSSVD 659
+ +A L ++ S +D
Sbjct: 430 NFIEA---TNLLEKASKLD 445
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 428 IGMEEDMKSNTTVMLLERLVESATE-SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVE 485
IG+E + +N+ L ER A + + H++GVV + E+K A+ WF A+E
Sbjct: 165 IGLEYGLTNNSK--LAERFFSQALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALE 221
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Query: 778 CPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRK 835
CP+ +LNNL ++ + ++ A Y AL + + AH LA V + + +
Sbjct: 5 CPT----HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 836 AAYDEMTKLIEKARNNASAYEKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAV 891
A + I + A AY E D A + A Q++P + A++
Sbjct: 61 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
Query: 892 LMDDHKEAEAIAELSRAIAFKPDL 915
D EAIA A+ KPD
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDF 144
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFS 316
D C+ E + + +A+ S F M ES++ +V N + E + F
Sbjct: 27 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFI 84
Query: 317 RTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYL 376
T + D ++ +LL+ A+++ E LK C+ L S +S A +LI L A L
Sbjct: 85 YTGKAPNLD-KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQL 143
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 921 RAAFHDSMGDHLHTQRDCEAALCLDPNHT 949
RAA + +G++ +DCE A+C+DP ++
Sbjct: 52 RAAAYSKLGNYAGAVQDCERAICIDPAYS 80
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFS 316
D C+ E + + +A+ S F M ES++ +V N + E + F
Sbjct: 176 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFI 233
Query: 317 RTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYL 376
T + D ++ +LL+ A+++ E LK C+ L S +S A +LI L A L
Sbjct: 234 YTGKAPNLD-KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQL 292
Query: 377 LVAA 380
A
Sbjct: 293 KTQA 296
>pdb|4GL8|A Chain A, X-Ray Crystal Structure Of A Periplasmic
Oligopeptide-Binding ProteinOLIGOPEPTIDE ABC
TRANSPORTER(OPPAIV) FROM BORRELIA Burgdorferi
pdb|4GL8|B Chain B, X-Ray Crystal Structure Of A Periplasmic
Oligopeptide-Binding ProteinOLIGOPEPTIDE ABC
TRANSPORTER(OPPAIV) FROM BORRELIA Burgdorferi
Length = 529
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 707 YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750
YS SE+++L+ + D R+E L KA E+I I+R F A FL
Sbjct: 453 YSNSEYDELLIKSDNERDIFKRQEILKKA-EAIIIERDFPAVFL 495
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,392,503
Number of Sequences: 62578
Number of extensions: 955888
Number of successful extensions: 2121
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2115
Number of HSP's gapped (non-prelim): 19
length of query: 967
length of database: 14,973,337
effective HSP length: 108
effective length of query: 859
effective length of database: 8,214,913
effective search space: 7056610267
effective search space used: 7056610267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)